Psyllid ID: psy11618

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380-
Protein Sequence
LITDDSFSPVTIYGAENPLGVEVPFGPYLPEYNELYCKYIKYIHEKFGPNFEYDQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYIHEKFGPNFEYDQLLFSYVSPKDRVIYYNVLKTKYEKCPDFWPYPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSSSSSSSFSYSSSSSSSSFSPLSPLFDFRTIRPTYS
Secondary Structure (PSIPRED)
cccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEcccccccEEEEEHHHcccccccccccccccccccccccccccccEEEEccccccHHHHccccccccccccccccccccHHHHcccccccccccccccccccccccEEEEccccHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHcccccccccccHHHHHHHccccccccccccccccccccccEEccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEEEEccccEEEEEEEEEcccEEEEEEEcEEEEEcccccccHHHHHHHccccHHHHHHcccccEEcccccccccccccccccEEEcccccccccccHHHHHHHHHHccccccccccccHHccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHcccccccccccEEEEEEEcccccccccEEEEEccccccccHHHHHHHHcccccHHHHHHHHHcccccccEEEEEEcccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccEEEcccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccccccEcccccccHHHHHHHHHHHHHHHHHccccccHcEEEEEEEcccccEEEEEHcccccccccccHHHHHHHHHHccccccHcHEEEEEEccccEEEEEEEEcccccccccccccccccccccEEEEEccccccccccccccccccEEEEEcccHHHHHHHHcccccccEEEEEEccccccccEcccHHHHHHcccccccEEEccccccHHHcccccEcccccccEEccccHHHHEEEEcccHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccccccHHHHHHHcHHHHcccccEEEEEEEEEEEEEccccEEEEEEEEEEccEEEEEEEEEEEEEccccccHHHHHHHccEEcHHHHHHccccccEEccccccEEccEEEEEEEEEcHHcccHHHHHHHHHHHHHHHcccccHHHccccccHHHHHHccccEEccccccccHHHHccccEEEEEccccccccHHHHHHHHHHHHHccccccccHHHHHEEEEEcccccccccEEEEEEEcccccccccEEEEccccccHHHHHHccccccccccEEEEEEccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccccccccccccHHHHHHHHHHHccccEccccccccccccccccEEccccEEEcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
litddsfspvtiygaenplgvevpfgpylpeyNELYCKYIKYIHekfgpnfeydqllfsyvspkdrvTYYNVLKTkyekcpdfwpYIKYIHekfgpnfeydqllfsyvspkdrvIYYNVLKtkyekcpdfwpyprlekeryniyrsviyppdmtpyvksgdcfdIIIVGASAAGCVLANRLSEVSSLKVLLIEaggdtpihsripgmssvlslsefdhaylaepsqfaglgvrNARIKItagkglggssAVQNILYqrgtsydyenfaklgyngwgydetlkyfvksedyRSVIYNeskavhgtqgylpvglfknkenNIIREIFETSaqelgypcpkdmndryvdvgfaelpgmtryglrfsaadayltpiagkrtnlyvlkrsKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLsgigpkahldevkipvkqdlrvgenlklnaqftgpvmafsaplkrtVYSQEMVFKYLVNrigplsnmHSYCYCLAhldevkipvkqdlrvgenlklnaqftgpvmafsaplkrtVYSQEMVFKYLVNRigplsnaglwsFTGYIDtlqntarpdLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVismslvnpkscgkvtlksadplappcidtgilsepedlatlirGTDYITRLEQTEAIRLAGGTLMSlnleacsqypwrsthswtcYIRHlttttsnpvgtvmmgnaddpnavvtpdlkvkgikglrvadisvlpnaiitQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSsfsssssssfsyssssssssfsplsplfdfrtirptys
Flexible Loop (DISEMBL)
litddsfspvtiygaenplgvevPFGPYLPEYNELYCKYIKYIHEKFGPNFEYDQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYIHEKFGPNFEYDQLLFSYVSPKDRVIYYNVLktkyekcpdfwpyprlEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAggdtpihsrIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKItagkglggssaVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESkavhgtqgylpvgLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAyltpiagkrtnlyvlkrskvtkviindqnvatgveyvnskgetvRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSSSSSSSFSYSsssssssfsplsplfdfrtirptys
Low Complexity Region (SEG)
LITDDSFSPVTIYGAENPLGVEVPFGPYLPEYNELYCKYIKYIHEKFGPNFEYDQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYIHEKFGPNFEYDQLLFSYVSPKDRVIYYNVLKTKYEKCPDFWPYPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflllflflllfllllflilplflllflfllllflfllllfllssfsssssssfsyssssssssfsPLSPLFDFRTIRPTYS
Disordered region (IsUnstruct)
********PVTIYGAENPLGVEVPFGPYLPEYNELYCKYIKYIHEKFGPNFEYDQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYIHEKFGPNFEYDQLLFSYVSPKDRVIYYNVLKTKYEKCPDFWPYPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLS**************************************
Disordered Region (DISOPRED)
*****SFSPVTIYGAENPLGVEVPFGPYLPEYNELYCKYIKYIHEKFGPNFEYDQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYIHEKFGPNFEYDQLLFSYVSPKDRVIYYNVLKTKYEKCPDFWPYPRLEKERYNIY************VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAG*GVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLS**************************LFDFRTIRP***
Disordered Region (DISEMBL)
LITDDSFSPVTIYGAENPLGVEVPFGPYLPEYNELYCKYIKYIHEKFGPNFEYDQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYIHEKFGPNFEYDQLLFSYVSPKDRVIYYNVLKTKYEKCPDFWPYPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSF*********************LSPLFDFRTIRPTYS
Disordered Region (DISPRO)
****DSFSPVTIYGAENPLGVEVPFGPYLPEYNELYCKYIKYIHEKFGPNFEYDQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYIHEKFGPNFEYDQLLFSYVSPKDRVIYYNVLKTKYEKCPDFWPYPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLL**************************PLFDFRTIRPT*S
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LITDDSFSPVTIYGAENPLGVEVPFGPYLPEYNELYCKYIKYIHEKFGPNFEYDQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYIHEKFGPNFEYDQLLFSYVSPKDRVIYYNVLKTKYEKCPDFWPYPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSSSSSSSFSYSSSSSSSSFSPLSPLFDFRTIRPTYS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1381	2.2.26 [Sep-21-2011]
P18172	625	Glucose dehydrogenase [ac	no	N/A	0.207	0.459	0.390	3e-38
P18173	625	Glucose dehydrogenase [ac	no	N/A	0.209	0.462	0.382	2e-37
Q47944	531	L-sorbose 1-dehydrogenase	yes	N/A	0.202	0.527	0.395	3e-36
Q6LGH5	568	Choline dehydrogenase OS=	yes	N/A	0.202	0.492	0.391	5e-35
Q6FDF9	553	Choline dehydrogenase OS=	yes	N/A	0.206	0.515	0.377	2e-33
Q1QXE1	560	Choline dehydrogenase OS=	yes	N/A	0.206	0.508	0.387	2e-33
Q1IG70	565	Choline dehydrogenase OS=	yes	N/A	0.207	0.507	0.384	3e-33
A5WA97	565	Choline dehydrogenase OS=	yes	N/A	0.207	0.507	0.377	4e-32
A7N2P9	569	Choline dehydrogenase OS=	yes	N/A	0.207	0.502	0.366	5e-32
B0KN19	565	Choline dehydrogenase OS=	yes	N/A	0.207	0.507	0.377	7e-32

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/305 (39%), Positives = 173/305 (56%), Gaps = 18/305 (5%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
           +D I++G  +AG V+A+RLSEV   KVLLIEAGGD P+ ++IP M      S+ D+ Y  
Sbjct: 65  YDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124

Query: 223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
           EP + A L     R     GK LGG+S +  ++Y RG   DY+++A  G  GW Y + L 
Sbjct: 125 EPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLP 184

Query: 283 YFVKSED--YRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 340
           +F KSED      +  E    H   G LPVG F    N  +      + +E+G+   +D+
Sbjct: 185 FFKKSEDNLELDAVGTE---YHAKGGLLPVGKF--PYNPPLSYALLKAGEEMGFSV-QDL 238

Query: 341 NDRYVDVGF--AELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN--DQN 396
           N +    GF  A++    R G+R+S+A A+L P A  R NL++L  + VTKV+I+   +N
Sbjct: 239 NGQNS-TGFMIAQM--TARNGIRYSSARAFLRP-ARMRNNLHILLNTTVTKVLIHPGTKN 294

Query: 397 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI-PVKQDLR 455
           V  GVE  +  G   ++   KEVI++ GA+ + Q+LLLSG+GPK  L +V + PV     
Sbjct: 295 V-VGVEVSDQFGSMRKILVKKEVIVSGGAVNSPQILLLSGVGPKEDLQKVNVRPVHHLPG 353

Query: 456 VGENL 460
           VG+NL
Sbjct: 354 VGKNL 358

Drosophila pseudoobscura pseudoobscura (taxid: 46245)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 171/303 (56%), Gaps = 14/303 (4%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
           +D I++G  +AG V+A+RLSEV   KVLLIEAGGD P+ ++IP M      S+ D+ Y  
Sbjct: 65  YDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124

Query: 223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
           EP   A L     R     GK LGG+S +  ++Y RG   DY+++A  G  GW Y++ L 
Sbjct: 125 EPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLP 184

Query: 283 YFVKSEDYRSVIYNE-SKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN 341
           +F KSED  ++  +E     H   G LPVG F    N  +      + +ELG+    D+N
Sbjct: 185 FFKKSED--NLDLDEVGTEYHAKGGLLPVGKF--PYNPPLSYAILKAGEELGFSV-HDLN 239

Query: 342 DRYVDVGF--AELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVAT 399
            +    GF  A++    R G+R+S+A A+L P A  R NL++L  +  TK++I+      
Sbjct: 240 GQNS-TGFMIAQM--TARNGIRYSSARAFLRP-ARMRNNLHILLNTTATKILIHPHTKNV 295

Query: 400 -GVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL-RVG 457
            GVE  +  G T ++   KEV+L+AGA+ +  +LLLSG+GPK  L +V +    +L  VG
Sbjct: 296 LGVEVSDQFGSTRKILVKKEVVLSAGAVNSPHILLLSGVGPKDELQQVNVRTVHNLPGVG 355

Query: 458 ENL 460
           +NL
Sbjct: 356 KNL 358

Essential for cuticular modification during development.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 121/306 (39%), Positives = 169/306 (55%), Gaps = 26/306 (8%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DT-P-IHSRIPGMSSVLSLSEFDHA 219
           FD I+VG  +AGCVLA RLSE  S++V LIEAG  DT P IH  +        ++   H 
Sbjct: 5   FDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRDTHPLIHMPV----GFAKMTTGPHT 60

Query: 220 Y--LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGY 277
           +  L EP + A     N +I    G+ LGG S++   ++ RG   D++ +A  G +GW +
Sbjct: 61  WDLLTEPQKHA----NNRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSF 116

Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
            +  KYF++SE   + ++  S   HGT G  P+G+    E N     F  S QE+G P  
Sbjct: 117 RDVQKYFIRSEG--NAVF--SGTWHGTNG--PLGVSNLAEPNPTSRAFVQSCQEMGLPYN 170

Query: 338 KDMNDRYVDVGFAELPGMT-RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
            D N    +   A +  MT R   R S A  YL P  G R NL V+ R+ V K++ N   
Sbjct: 171 PDFNGASQE--GAGIYQMTIRNNRRCSTAVGYLRPALG-RKNLTVVTRALVLKIVFNGTR 227

Query: 397 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL-R 455
            ATGV+Y+ + G      A++E+++TAGAI   +L++LSG+GP AHL E  IPV QDL  
Sbjct: 228 -ATGVQYI-ANGTLNTAEASQEIVVTAGAIGTPKLMMLSGVGPAAHLRENGIPVVQDLPG 285

Query: 456 VGENLK 461
           VGENL+
Sbjct: 286 VGENLQ 291

Gluconobacter oxydans (taxid: 442)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 2

>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 121/309 (39%), Positives = 170/309 (55%), Gaps = 29/309 (9%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLS--LSEFDHA 219
           +D IIVGA +AGCVLA+RLS      +LL+EAGG D  I  ++P   + LS  ++   +A
Sbjct: 5   YDYIIVGAGSAGCVLADRLSASGEHYILLLEAGGSDRSIFIQMP---TALSYPMNSEKYA 61

Query: 220 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDE 279
           +  E    AGL  R+  +    G+ LGGSS++  ++Y RG + DY+ + + G  GW Y E
Sbjct: 62  WQFETQPEAGLDSRS--LHCPRGRVLGGSSSINGMVYVRGHACDYDEWVEQGAEGWSYQE 119

Query: 280 TLKYFVKSEDYRSVIYNESKAVHGTQ----GYLPVGLFKNK--ENNIIREIFETSAQELG 333
            L YF ++E +          +HG      G  PVG       E N + + F  + Q+ G
Sbjct: 120 CLPYFRRAESW----------IHGEDTYRGGDGPVGTCNGNDMELNPLYQAFIDAGQQAG 169

Query: 334 YPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 393
           YP   D N  Y   GF  +      G+R S ++AYL   A KR+NL V K     KV+I 
Sbjct: 170 YPKTDDYNG-YQQEGFGPMHMTVDKGIRASTSNAYLR-RAMKRSNLTVRKGVVTRKVLIK 227

Query: 394 DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
           ++  A GVE +   G+   V AN EV+L+AG++ + QLL LSGIGPKA L++  I VK D
Sbjct: 228 NKQ-AIGVE-IEVGGKVQSVYANTEVLLSAGSVGSPQLLQLSGIGPKAVLEQAGIAVKHD 285

Query: 454 L-RVGENLK 461
           L  VGENL+
Sbjct: 286 LPGVGENLQ 294

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Photobacterium profundum (taxid: 74109)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA PE=3 SV=1

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/310 (37%), Positives = 167/310 (53%), Gaps = 25/310 (8%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
           FD II+GA +AG VLA RL+E + + VLL+EAGG        +++P   +  L    ++ 
Sbjct: 6   FDYIIIGAGSAGNVLAARLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNW 65

Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
           AYL EP       + N R++   GKGLGGSS +  + Y RG + D E ++KL G   W Y
Sbjct: 66  AYLTEPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEGWSKLKGLENWTY 121

Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNII--REIFETSAQELGYP 335
            + L Y+ K+E  R +  N+    HG     PV +   K+NN +    + E   Q  GYP
Sbjct: 122 ADCLPYYKKAE-TRDIGGNDYHGDHG-----PVSVATPKDNNNVLFHAMVEAGVQ-AGYP 174

Query: 336 CPKDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND 394
              D+N  Y   GF  +   +T+ G R S A  YL  +A +R NL ++  +   K++ N 
Sbjct: 175 RTDDLNG-YQQEGFGPMDRTVTKNGRRSSTARGYLD-MAKERPNLTIITHAMTNKILFNG 232

Query: 395 QNVATGVEYVNS--KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQ 452
           +  A GVEY+    K +  +V ANKEV+L AGAIA+ Q+L  SG+G    L  + I V  
Sbjct: 233 KQ-AIGVEYIQGADKRDLKKVMANKEVLLCAGAIASPQILQRSGVGESTFLKSMDIDVVH 291

Query: 453 DL-RVGENLK 461
           DL  VGENL+
Sbjct: 292 DLPGVGENLQ 301

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Acinetobacter sp. (strain ADP1) (taxid: 62977)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/307 (38%), Positives = 168/307 (54%), Gaps = 22/307 (7%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGM-SSVLSLSEFDH 218
           +D II+GA +AG VLA RL+E   ++VLL+EAGG        +++P   +  L    ++ 
Sbjct: 7   YDYIIIGAGSAGNVLATRLTEDPDVQVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNW 66

Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
           A+  +P  +    + N R++   GKGLGGSS +  + Y RG + DY+N+AK+ G   W Y
Sbjct: 67  AFETDPEPY----MNNRRMECGRGKGLGGSSLINGMCYLRGNALDYDNWAKIPGLEDWNY 122

Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKE-NNIIREIFETSAQELGYPC 336
            + L YF ++E  R +  N+    HG  G  PV +   KE NN +   F  +  E GYP 
Sbjct: 123 LQCLPYFKRAE-TRDIGPND---YHGGDG--PVSVATPKEGNNELYGAFIRAGIEAGYPA 176

Query: 337 PKDMNDRYVDVGFAELPGMTR-YGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ 395
            +D+N  Y   GF  +   T   G R S A  YL  IA +R NL  ++    T VI  + 
Sbjct: 177 TEDVNG-YQQEGFGPMDRTTTPNGRRASTARGYLD-IAKQRPNL-TIETHATTDVIEFEG 233

Query: 396 NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
             A GV Y   KG+  RV A +EV+L AGAIA+ Q+L  SG+G   HL+E  IPV  +L 
Sbjct: 234 KRAVGVSY-ERKGQAQRVRARREVLLCAGAIASPQILQRSGVGNPEHLEEFDIPVVHELP 292

Query: 455 RVGENLK 461
            VGENL+
Sbjct: 293 GVGENLQ 299

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) (taxid: 290398)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q1IG70|BETA_PSEE4 Choline dehydrogenase OS=Pseudomonas entomophila (strain L48) GN=betA PE=3 SV=1

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 167/307 (54%), Gaps = 20/307 (6%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
           FD IIVGA +AG  LA RL+E +S+ VLL+EAGG        +++P   +  L    ++ 
Sbjct: 5   FDYIIVGAGSAGNTLATRLTEDASVSVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64

Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
           AY  +P  F    +   R++   GKGLGGSS +  + Y RG + D++ +A+L G   W Y
Sbjct: 65  AYETDPEPF----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDWTY 120

Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
            + L YF K+E  R +  N+    HG +G + V   K   N +   + E   Q  GYP  
Sbjct: 121 LDCLPYFRKAE-TRDIGPND---YHGGEGPVSVATPKAGNNPLFHAMVEAGVQ-AGYPRT 175

Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
           +D+N  Y   GF  +   +T+ G R S A  YL   A KR NL ++  +   +V+  D  
Sbjct: 176 EDLNG-YQQEGFGPMDRSVTKKGRRSSTARGYLD-QAKKRPNLTIVTHALSDRVLF-DGK 232

Query: 397 VATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
            A GV Y V    E V   A KEVI+++GAIA+ QLL  SG+GP+A L+ + IPV  DL 
Sbjct: 233 RAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLP 292

Query: 455 RVGENLK 461
            VGENL+
Sbjct: 293 GVGENLQ 299

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas entomophila (strain L48) (taxid: 384676)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A5WA97|BETA_PSEP1 Choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=betA PE=3 SV=1

 Score =  141 bits (355), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 165/307 (53%), Gaps = 20/307 (6%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
           FD IIVGA +AG  LA RL+E + + VLL+EAGG        +++P   +  L    ++ 
Sbjct: 5   FDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64

Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
           AY  +P  +    +   R++   GKGLGGSS +  + Y RG + D++ +A+L G   W Y
Sbjct: 65  AYETDPEPY----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDWTY 120

Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
            + L YF K+E  R +  N+    HG  G + V   K   N +   + E   Q  GYP  
Sbjct: 121 LDCLPYFRKAE-TRDIGPND---YHGGDGPVSVATPKAGNNPLFHAMVEAGVQ-AGYPRT 175

Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
           +D+N  Y   GF  +   +T+ G R S A  YL   A KR NL ++  +   +V+  D  
Sbjct: 176 EDLNG-YQQEGFGPMDRSVTKNGRRSSTARGYLD-QAKKRPNLTIVTHALTDRVLF-DGK 232

Query: 397 VATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
            A GV Y V    E V   A KEVI+++GAIA+ QLL  SG+GP+A L+ + IPV  DL 
Sbjct: 233 RAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLP 292

Query: 455 RVGENLK 461
            VGENL+
Sbjct: 293 GVGENLQ 299

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas putida (strain F1 / ATCC 700007) (taxid: 351746)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=betA PE=3 SV=1

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 165/303 (54%), Gaps = 17/303 (5%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 221
           +D IIVGA +AGCVLA+RLSE    +VLL+EAGG D  I  ++P   + LS       Y 
Sbjct: 5   YDYIIVGAGSAGCVLADRLSESGQHQVLLLEAGGSDKSIFIQMP---TALSYPMNTEKYA 61

Query: 222 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 281
            +    A  G+   ++    GK LGGSS++  ++Y RG + D++ +   G  GW Y   L
Sbjct: 62  WQFETVAEEGLDGRQLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEAEGAKGWNYQACL 121

Query: 282 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN--NIIREIFETSAQELGYPCPKD 339
            YF K+E +     +E +      G  PVG     +   N + + F  + ++ GYP  +D
Sbjct: 122 PYFRKAETWTGGA-DEYRG-----GSGPVGTCNGNDMKLNPLYQAFIEAGKDAGYPETQD 175

Query: 340 MNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVAT 399
            N  Y   GF  +      G+R S ++AYL+  A KR+N  ++K     ++++  +  A 
Sbjct: 176 YNG-YQQEGFGPMHMTVDKGVRASTSNAYLS-RAKKRSNFTLMKGVTAHRILLEGKK-AV 232

Query: 400 GVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGE 458
           G+E+  S GE  +  ANKEV+ +AG+I + QLL LSGIGPK  LD+  I VK  L  VG+
Sbjct: 233 GIEFEQS-GEIKQCFANKEVVSSAGSIGSVQLLQLSGIGPKTVLDKAGIEVKHTLEGVGK 291

Query: 459 NLK 461
           NL+
Sbjct: 292 NLQ 294

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B0KN19|BETA_PSEPG Choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA PE=3 SV=1

 Score =  140 bits (353), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 165/307 (53%), Gaps = 20/307 (6%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSS-VLSLSEFDH 218
           FD IIVGA +AG  LA RL+E + + VLL+EAGG        +++P   +  L    ++ 
Sbjct: 5   FDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNW 64

Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGY 277
           AY  +P       +   R++   GKGLGGSS +  + Y RG + D++ +A+L G   W Y
Sbjct: 65  AYETDPEPH----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLQDWTY 120

Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
            + L YF K+E  R +  N+    HG +G + V   K   N +   + E   Q  GYP  
Sbjct: 121 LDCLPYFRKAE-TRDIGPND---YHGGEGPVSVATPKAGNNPLFHAMVEAGVQ-AGYPRT 175

Query: 338 KDMNDRYVDVGFAELP-GMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN 396
           +D+N  Y   GF  +   +T+ G R S A  YL   A KR NL ++  +   +V+  D  
Sbjct: 176 EDLNG-YQQEGFGPMDRSVTKNGRRSSTARGYLD-QAKKRPNLTIVTHALSDRVLF-DGK 232

Query: 397 VATGVEY-VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL- 454
            A GV Y V    E V   A KEVI+++GAIA+ QLL  SG+GP+A L+ + IPV  DL 
Sbjct: 233 RAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLP 292

Query: 455 RVGENLK 461
            VGENL+
Sbjct: 293 GVGENLQ 299

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas putida (strain GB-1) (taxid: 76869)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1381
242018486	635	glucose dehydrogenase precursor, putativ	0.394	0.858	0.345	2e-72
328779380	683	PREDICTED: glucose dehydrogenase [accept	0.430	0.871	0.311	7e-59
193676365	1147	PREDICTED: hypothetical protein LOC10015	0.260	0.313	0.413	5e-58
307203797	673	Glucose dehydrogenase [acceptor] [Harpeg	0.417	0.857	0.321	2e-56
340730155	615	PREDICTED: glucose dehydrogenase [accept	0.383	0.860	0.309	1e-55
340730088	591	PREDICTED: glucose dehydrogenase [accept	0.383	0.895	0.319	2e-55
345488938	633	PREDICTED: glucose dehydrogenase [accept	0.215	0.470	0.416	2e-53
345488948	616	PREDICTED: glucose dehydrogenase [accept	0.234	0.525	0.402	4e-53
405978093	621	Glucose dehydrogenase [acceptor] [Crasso	0.217	0.483	0.438	6e-53
350425619	615	PREDICTED: glucose dehydrogenase [accept	0.383	0.860	0.304	1e-52

>gi|242018486|ref|XP_002429706.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] gi|212514709|gb|EEB16968.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis]

 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 221/639 (34%), Positives = 321/639 (50%), Gaps = 94/639 (14%)

Query: 146 SVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIP 205
           SV YP D    + +G  FD II+GA +AG V+ANRLSE  +  VLLIEAGG     S IP
Sbjct: 45  SVDYPEDKWKSLVNGQNFDFIIIGAGSAGSVVANRLSENPNWSVLLIEAGGSPTPTSEIP 104

Query: 206 G--MSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYD 263
           G  +SS+ +  + D  Y  E      LG+   +     GK LGG+S +  ++Y RG   D
Sbjct: 105 GLWISSLKT--KMDWNYKLEKMTNCCLGMIEEKCLSPRGKVLGGTSVINAMIYVRGNPED 162

Query: 264 YENFAKLGYNGWGYDETLKYFVKSEDYRS---VIYNE-----SKAVHGTQGYLPVGLFKN 315
           Y  +  +G  GW Y   LKYF +SE       V  NE     SK  H ++G L V  F  
Sbjct: 163 YNEWENMGNEGWAYKNILKYFKRSEKMSGFNFVDENEISKLVSKKYHSSKGLLNVEHFGK 222

Query: 316 KEN-NIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAG 374
           + N + ++ +     +ELG     D+N R+  +GF E    T  G R + A  +L PI G
Sbjct: 223 RPNVDYLKNVIFDGVEELGEFYVSDVNGRF-QLGFTEPQTTTENGRRANTAKTFLNPIKG 281

Query: 375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLL 434
            R NL ++K S   K+I+ D+    GV+ V S GE  RV  +KEVIL+AG+I   QLL+L
Sbjct: 282 -RKNLLIVKNSMAHKLIL-DRKRVIGVQ-VESNGEMKRVFVHKEVILSAGSINTPQLLML 338

Query: 435 SGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVN 493
           SGIGP+ HL+ + IPV  ++  VG+NL                       Q+ V  Y   
Sbjct: 339 SGIGPRQHLESLNIPVVHEMNGVGQNL-----------------------QDHVVTY--- 372

Query: 494 RIGPLS-NMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQ 552
            + P+S N H              P K   R G++L                        
Sbjct: 373 -VAPISINKHK-------------PDKMS-RPGDDL------------------------ 393

Query: 553 EMVFKYLVNRIGPLSNAGLWSFT-----GYIDTLQNTARPDLEIHLLYFQQNDIRNMCKI 607
                +L++  GP S     SFT     G+++T +N+  PD++ H +YF  ND  ++ K 
Sbjct: 394 SHYHDFLLHGTGPYS-----SFTNLDVVGFVNTFKNSTLPDVQYHFMYFYLNDTESVKKF 448

Query: 608 KRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEP 667
            R  +   E+   YV + +  ++ +IS +L+ PKS G++ LKS++P   P I    L+ P
Sbjct: 449 TRVLNLKPEIGNEYVKIVRDANLLLISTTLLRPKSTGRIELKSSNPYDSPKIIGNYLNVP 508

Query: 668 EDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTS 727
            DL TLIRG +++  L +T+++++    L  + L+ CS   ++S   WTC IRHL+T   
Sbjct: 509 GDLDTLIRGVEFVVSLSETKSLKMRESNLERIRLKNCSSEKFKSREYWTCLIRHLSTNLY 568

Query: 728 NPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLP 766
           +PVGT  MG   D  +VV   LKV G+  LR+AD S++P
Sbjct: 569 HPVGTCKMGPKKDSTSVVDSKLKVHGLTNLRIADGSIMP 607

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779380|ref|XP_396549.3| PREDICTED: glucose dehydrogenase [acceptor] [Apis mellifera]

 Score =  236 bits (602), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 203/651 (31%), Positives = 323/651 (49%), Gaps = 56/651 (8%)

Query: 151 PDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSV 210
           PD T + +    +D I++GA +AG VL NRL+E     VLL+E G D    + IP ++  
Sbjct: 42  PDQTRFSQE---YDFIVIGAGSAGSVLTNRLTENPQWNVLLLEEGKDEIFLTDIPLLAPA 98

Query: 211 LSLSEFDHAYLAEPSQFAGLGV-------RNARIKITAGKGLGGSSAVQNILYQRGTSYD 263
           L ++++   + +EP      G        +N R  +  G+ +GGSS V  ++Y RG+  D
Sbjct: 99  LHVTDYVRLHTSEPRPRNTDGTDGYCLSMKNGRCNLPGGRAVGGSSVVNFMIYSRGSPND 158

Query: 264 YENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIRE 323
           Y+N+A  G  GW Y   L YF+KSE+ +  + ++    HG  GYL V    +   + +RE
Sbjct: 159 YDNWAAQGNPGWSYQNVLPYFIKSENCK--LLDQDIRFHGKGGYLDV--ISSPYVSPLRE 214

Query: 324 IFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLK 383
            F    +ELGY    D N   V +GF+      R G R SA+ A+L PI  +R N ++ K
Sbjct: 215 CFLRGGEELGYDV-IDYNAANV-IGFSTAQVHLRNGRRVSASKAFLRPIR-ERKNFHLSK 271

Query: 384 RSKVTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAH 442
            S+ T+++I+  + VA GVE+V + G    V+A+KE+IL+ G + + QLL+LSGIGPK H
Sbjct: 272 LSRATRIVIDPKKKVAVGVEFVKN-GRKRFVSASKEIILSTGTLNSPQLLMLSGIGPKDH 330

Query: 443 LDEVKIPVKQDLRVGENLKLNAQFT------GPVMAFSAPLKRTVYSQEMVFKYLVNRIG 496
           L+ + I   +DL+VG NL+ +   +         +    P  R   +   +  Y V   G
Sbjct: 331 LESLNIDSIEDLQVGYNLQDHVSMSMLTFLVNESVTIVEP--RIASNLANILDYFVKGTG 388

Query: 497 PLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVF 556
           PL+ +     CLA +D      K+D     +++L  +F      F   LKR    ++   
Sbjct: 389 PLT-VPGGAECLAFID-----TKED----RSIRLMKKFQVNNTKFRDHLKR-FNDKKASL 437

Query: 557 KYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQ-QNDIRNMCK--IKRAYDF 613
              +  I    N+   +   +++  + T  PD+E+ L       DI    +  +    +F
Sbjct: 438 PPNITTI--TVNSDYLNQRSFLNETKETNVPDIELVLGISALTGDISGSYRGLLGLTNEF 495

Query: 614 NDEVQTAYVNLNKRTDMGVISMSLV----NPKSCGKVTLKSADPLAPPCIDTGILSEPED 669
             EV T Y         G  + S+V     PKS G+VTLKS+DP   P  +T      +D
Sbjct: 496 YKEVFTGY--------EGYDAFSIVPVLLQPKSRGRVTLKSSDPFDRPIFETNYYDHEDD 547

Query: 670 LATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNP 729
           L T++RG      +  T+A +    TL+ +    C   P+ +   W C  R +TTT  + 
Sbjct: 548 LRTMVRGIRKAIEVASTKAFKRFNATLLPVAFPGCKHVPFGTDPYWACVARQVTTTLGHF 607

Query: 730 VGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
           VGT  MG   + + VV   L+V GI GLRV D S++P  +   ++A+++++
Sbjct: 608 VGTCKMGPRRN-SGVVDHRLRVHGINGLRVVDASIIPTIVTGHTNAVAYMI 657

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|193676365|ref|XP_001949532.1| PREDICTED: hypothetical protein LOC100159632 [Acyrthosiphon pisum]

 Score =  233 bits (595), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 154/372 (41%), Positives = 225/372 (60%), Gaps = 12/372 (3%)

Query: 134 PRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIE 193
            +L+ +RY +    IYP D T YV + + FD IIVG   AGCVLAN+LSE    KVLLIE
Sbjct: 555 SQLDYQRYKLMDDSIYPQDSTRYVINDEEFDFIIVGGGNAGCVLANKLSENVKWKVLLIE 614

Query: 194 AGGDT-PIHSRIPGM--SSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSA 250
           AGGD  PI ++IP +   S+ S++++   +  +P    G G+    +KI  G+GLGGSS 
Sbjct: 615 AGGDPFPI-TQIPSLWDRSLNSVADW--QFKIQPDSTTGFGI-GGNMKIHKGRGLGGSSI 670

Query: 251 VQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESK-AVHGTQGYLP 309
               LY RG+   Y +  K G   W Y+ T  YF K E  RS+   E+   ++G  G +P
Sbjct: 671 TSAQLYVRGSEQLYNSLVKKGLKNWSYNTTETYFKKVERIRSITKTETNTTIYGKCGLIP 730

Query: 310 VGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYL 369
           V  F+  E +++ +I  +  + +G     D+N++ ++VGF  + G+ + G   + A AYL
Sbjct: 731 VSKFRKTEVSVLEKIVCSGFEHIGCKKESDINEKDIEVGFVSMQGIIKNGRSINTAKAYL 790

Query: 370 TPIAGKRTNLYVLKRSKVTKVIINDQNV-ATGVEYVNSK-GETVRVTANKEVILTAGAIA 427
           +PI G R NL V+K S+VTK+I+N   + ATGVE V +K G+T+ + A  EV+L AGA+ 
Sbjct: 791 SPIFG-RENLKVMKYSRVTKIIVNKTEMKATGVE-VQTKFGQTLTIKAKLEVLLCAGAVG 848

Query: 428 NAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMV 487
           +AQ+LL SGIGPK HL E+++PV +DL+VGEN  +   FTG V+++   +      +E+ 
Sbjct: 849 SAQILLASGIGPKKHLSEMEVPVVKDLKVGENFLITPVFTGFVISYDKSVVCNQTDEEIA 908

Query: 488 FKYLVNRIGPLS 499
           FKYL    GPLS
Sbjct: 909 FKYLARHSGPLS 920

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203797|gb|EFN82733.1| Glucose dehydrogenase [acceptor] [Harpegnathos saltator]

 Score =  228 bits (581), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 210/653 (32%), Positives = 317/653 (48%), Gaps = 76/653 (11%)

Query: 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDH 218
           +G  +D +++GA +AG V+ANRL+E    KVLL+EAG D    + IP ++  L ++ +  
Sbjct: 49  TGQRYDFVVIGAGSAGSVIANRLTENPDWKVLLLEAGDDETFFTDIPFLAPALHVTHYSR 108

Query: 219 AYLAEPSQFAGLGVR-------NARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLG 271
            Y +EP      G         + R  + +GK +GG+S V  ++Y RG   DY+ +  LG
Sbjct: 109 IYKSEPRPQDSHGRHGYCLSMVDGRCNMMSGKAVGGTSVVNFMIYSRGAPADYDGWQALG 168

Query: 272 YNGWGYDETLKYFVKSED----YRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFET 327
             GW Y + L YF+KSE      R V Y      HG  GYL V          +++ F  
Sbjct: 169 NPGWSYKDVLPYFIKSEKCKLVDRDVRY------HGYNGYLDVTTPPYA--TPLKDYFLK 220

Query: 328 SAQELGYPCPKDMNDRYVD--VGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 385
           + QELGY    D+ D   D  +GF+ +    R G RFSA+ A+L PI G R N Y+ K S
Sbjct: 221 AGQELGY----DIVDYNSDKLMGFSSVQTNMRNGHRFSASKAFLRPIYG-RPNFYLSKFS 275

Query: 386 KVTKVIINDQ-NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLD 444
            VTK+ I+ +   A GV++V ++ +T  V+A KEVIL+AG + + ++L+LSG+GP+ HL 
Sbjct: 276 TVTKIKIDPRTKAAVGVQFVRNR-KTYYVSATKEVILSAGTLNSPKILMLSGVGPRDHLT 334

Query: 445 EVKIPVKQDLRVGENLKLNAQFTG----PVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSN 500
            + I V +DL VG NL+ +   T        + +    R   +   + +YL++  GPL+ 
Sbjct: 335 SLGINVIEDLPVGFNLQDHVSMTALTFLVNDSVTITESRLSTNPANLIQYLMDGTGPLT- 393

Query: 501 MHSYCYCLAHLDEVKIPVKQDLRVGENLK-LNAQFTGPVMAFSAPLK-------RTVYSQ 552
                          IP        E L  +N + +GP       LK        T  S 
Sbjct: 394 ---------------IPGGA-----EALAFINTKASGPKNTQKGKLKPKYISRLNTPKSS 433

Query: 553 EMVFK--YLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLE-IHLLYFQQNDIRNMCK--I 607
           E   +    V  I   S A   S +G  D      RPD+E I        DI    +  +
Sbjct: 434 EQPARAPSDVTSITVNSFAADASKSGTEDD-----RPDIELISCSSSMTGDISGSFRGLL 488

Query: 608 KRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEP 667
               +F  EV + Y    + +D   I   L+ PKS G++TL+S+DP   P +D       
Sbjct: 489 GLTDEFYKEVFSGY----EGSDAFTIVPVLLQPKSRGRLTLRSSDPSHWPVVDINYYDHE 544

Query: 668 EDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTS 727
           +DL T++RG      +  T A+R    TL+ +    C +  + S   W C  RH++T+  
Sbjct: 545 DDLNTMVRGIKKAIEVASTRALRRFNATLLPVPFPGCRRVTFNSDAYWACVARHVSTSLG 604

Query: 728 NPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
           + VGT  MG   D + VV   L+V GI GLRV D SV+P  I   ++A ++++
Sbjct: 605 HFVGTCKMGLRQD-SGVVDHRLRVHGISGLRVVDTSVMPTIITGHTNAPAYMI 656

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|340730155|ref|XP_003403352.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus terrestris]

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 197/637 (30%), Positives = 300/637 (47%), Gaps = 108/637 (16%)

Query: 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYL 221
            +D I+VG+ +AG V+A+RLSE+    VLL+E G D  +   IP ++  L L++ D  Y 
Sbjct: 50  AYDFIVVGSGSAGAVVASRLSEIEDWNVLLLEVGEDGSVVYDIPSLADNLQLTKVDWDYR 109

Query: 222 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 281
            EP++     + N R +   GK LGGSS + ++LY RG+  DY+N+ + G  GW Y + L
Sbjct: 110 TEPNENYCRAMENGRCRWPRGKVLGGSSGINSMLYVRGSKKDYDNWEQQGNPGWSYQDVL 169

Query: 282 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN 341
            YF+KSED RS  Y ++   H T GYL V   + +    +   F  + +ELG+   +D+N
Sbjct: 170 PYFLKSEDNRSPKYAKT-PYHSTGGYLTV--EEPRWRTPLAAAFIQAGRELGFEN-RDIN 225

Query: 342 DRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-ATG 400
                 GF    G TR G R S A A+L P A KR NL+V   + VTK++I+  +  A G
Sbjct: 226 GER-QTGFMIPQGTTRDGSRCSTAKAFLRP-ARKRKNLHVAMEAHVTKILIDSSSKKAYG 283

Query: 401 VEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENL 460
           VE+V + GET+RV             AN ++++  G                        
Sbjct: 284 VEFVRN-GETLRVR------------ANKEVIVSGG------------------------ 306

Query: 461 KLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQ 520
                              T+ S +++   +++ IGP            HL E  IPV Q
Sbjct: 307 -------------------TINSPQLL---MLSGIGPKE----------HLLEHHIPVIQ 334

Query: 521 DLRVGENLKLNAQFTG-------PVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWS 573
           DL+VG NL+ +    G        + +  + +    Y    + +Y ++   PLS      
Sbjct: 335 DLKVGHNLQDHVGVGGLMFLVNEEISSIESKITNISY----ILEYAMSADSPLSTIATVE 390

Query: 574 FTGYIDTLQNTAR---PDLEIHLLYFQQN-----DIRNMCKIKRAYDFNDEVQTAYVNLN 625
            T +I T    A    PD+++H +    N     + R + +     +F D V   Y NL 
Sbjct: 391 GTCFIHTKYANASDDIPDIQLHFMSSGPNSEIFREDRGLTR-----EFYDAV---YGNLG 442

Query: 626 KRTDMGVISM--SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRL 683
            +   G  S   +L+ PKS G V L+S +P   P I      EPED+ATL+ G  ++  L
Sbjct: 443 GK---GSWSAFPALLRPKSRGVVKLRSKNPFDHPLIYPNYFKEPEDMATLVEGAKFVYEL 499

Query: 684 EQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNA 743
            QT++ +  G  +       C   P  S   W C  R L+ T  +PVG+  MG   D NA
Sbjct: 500 SQTQSFKRYGSKMNPTPFPGCKHIPKYSDSFWECMARFLSVTIYHPVGSCKMGPKSDANA 559

Query: 744 VVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
           VV   L+V G+ GLRV D S++PN +   ++A + ++
Sbjct: 560 VVDHRLRVHGVAGLRVIDASIMPNQVGGNTNAPTIMI 596

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|340730088|ref|XP_003403320.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus terrestris]

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 203/635 (31%), Positives = 295/635 (46%), Gaps = 106/635 (16%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
           +D IIVG  +AG V+ANRLSE+    VLL+EAG D      +P ++  L  SE D  Y  
Sbjct: 26  YDFIIVGGGSAGNVMANRLSEIEDWDVLLLEAGADGSAIYDVPTLAPTLQGSEIDWNYTT 85

Query: 223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
           EP++   L + N R     GK LGG S +  +LY RG   DY+ + + G  GW Y + L 
Sbjct: 86  EPNENYCLAMENRRCHWPRGKVLGGCSGINYMLYIRGAKKDYDIWEQQGNPGWSYQDVLP 145

Query: 283 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN- 341
           YF+KSED RS  Y ++   H T GYL V   + +    +   F  + QE+GY   +D+N 
Sbjct: 146 YFLKSEDNRSPKYAKT-PYHSTGGYLTV--EEPRWRTPLAAAFIQAGQEMGYKN-RDING 201

Query: 342 DRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQNVATG 400
           +R+   GF    G  R G R S A A+L P A  R NL+V  ++ VTK++I+     A G
Sbjct: 202 ERHT--GFMIPQGTIRDGSRCSTAKAFLRP-AMSRKNLHVAMKAHVTKILIDPSTKRAYG 258

Query: 401 VEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENL 460
           VE+V   GETVRV             AN ++++  G                        
Sbjct: 259 VEFVRD-GETVRVH------------ANKEVIVSGG------------------------ 281

Query: 461 KLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQ 520
                              T+ S +++   +++ IGP            HL +  I V Q
Sbjct: 282 -------------------TINSPQLL---MLSGIGPKE----------HLSKHGITVIQ 309

Query: 521 DLRVGENLKLNAQFTGP---VMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGY 577
           DLRVG NL+ +    G    V    A ++  + +   + +Y+++  GPL+  G     G+
Sbjct: 310 DLRVGHNLQDHISVGGLTFLVNEEIALVQSRLNNISNILEYVISGDGPLTTLGFNEVVGF 369

Query: 578 IDTLQNTAR---PDLEIHLLY---FQQNDIRNMCKIKRAYD------FNDEVQTAYVNLN 625
           I+T    A    PDL+IH+     F ++  ++    +  YD       N +  +AY    
Sbjct: 370 INTKYANASDDFPDLQIHIWTTGDFTESSRKSFGLTREFYDAVLKDVHNKDGWSAYP--- 426

Query: 626 KRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQ 685
                     +L+ PKS G + L+S +P   P I      EPED+A LI G  +I  + Q
Sbjct: 427 ----------TLLRPKSRGIIELRSNNPFDYPLIYPNYFKEPEDMAKLIEGVKFIVEMSQ 476

Query: 686 TEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVV 745
           T ++R  G  L       C   P  S   W C IR    T ++PVGT  MG   DP AVV
Sbjct: 477 TASLRRFGSKLNPNPFPDCKHIPLYSEPYWECMIRSFPLTVAHPVGTCKMGPKSDPQAVV 536

Query: 746 TPDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
            P L+V G+ GLRV D S++PN I    +A + ++
Sbjct: 537 DPWLRVYGVTGLRVIDSSIMPNLISGNINAPTIMI 571

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|345488938|ref|XP_001600775.2| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/322 (41%), Positives = 188/322 (58%), Gaps = 24/322 (7%)

Query: 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAY 220
           D FD +IVGA AAGCVLANRLSEV + K+LL+EAG + P  + +P ++ +L LS  D+AY
Sbjct: 56  DDFDFVIVGAGAAGCVLANRLSEVKNWKILLLEAGDEEPAVANVPALARILRLSSIDYAY 115

Query: 221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDET 280
             +P +F GLG  N       G+ +GGSS +  + Y RG   DY+++A+LG  GW YDE 
Sbjct: 116 HTQP-EFTGLG--NVSYYWPRGRVMGGSSTINTMWYVRGHKQDYDDWARLGNPGWSYDEV 172

Query: 281 LKYFVKSEDYRS-VIYNESKAVHGTQGYLPVGL--FKNKENNIIREIFETSAQELGYPCP 337
           L YF KSED R   ++  S   H   GY+ V    +++K   IIR  +    +E+G+   
Sbjct: 173 LPYFKKSEDARDPEVFTRSPETHSRGGYMTVERYPYQDKNTKIIRNAW----REMGF-AE 227

Query: 338 KDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQN 396
            D N   V  G ++L   + +G   SA  A+L PI G R NL +   SKV K+II+ D  
Sbjct: 228 TDYNS-GVQFGMSKLQFNSIHGTHQSANGAFLRPIRGSRPNLTIRTNSKVVKIIIDPDSK 286

Query: 397 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRV 456
              GV+Y++SK   + V A KEVI++AG++ + +LL+LSGIGP   L +  IP+ +DL V
Sbjct: 287 RVVGVQYLDSKSRLISVLAKKEVIVSAGSVESPKLLMLSGIGPAEELVQADIPLLKDLPV 346

Query: 457 GENL-----------KLNAQFT 467
           G NL           KLN Q +
Sbjct: 347 GRNLLDHPILYPFTFKLNEQAS 368

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|345488948|ref|XP_001600924.2| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  217 bits (553), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 203/355 (57%), Gaps = 31/355 (8%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
           FD I+VGA +AGCV+ANRLSE+   K+LL+EAG + P  + IPG+ S+L  S  D+AY +
Sbjct: 60  FDFIVVGAGSAGCVVANRLSEIHDWKILLLEAGDEAPGITDIPGLLSLLQKSSVDYAYKS 119

Query: 223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
           +P   +     N++ +  +GK +GG+S++  +LY RG+ YD++N+A LG  GW ++E L 
Sbjct: 120 QPEPMSCQAEPNSQCEFYSGKMMGGTSSLNVMLYVRGSKYDFDNWAALGNTGWSWNEVLP 179

Query: 283 YFVKSEDYRS-VIYNESKAVHGTQGYLPVGLFKNKENNIIREIFE----TSAQELGYPCP 337
           YF+KSED R   +  ++   H   GYL V      E  I  +  E     + QELGY   
Sbjct: 180 YFLKSEDQRDKEVLQQNPEYHSRGGYLTV------ERQIYYDENERALLEAWQELGY--- 230

Query: 338 KDMNDRYVDVGFAELPGMTR------YGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI 391
                  +D    EL G  R       G R S   A++ PI G+R NL++   S+VTKV+
Sbjct: 231 -----SEIDYNTGELIGTARMQYTKIDGARQSTNGAFIRPIRGQRHNLHIRVNSRVTKVL 285

Query: 392 IN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 450
           I+ +    TGVEYV+  G   RV A KEVIL+AG+IA  +LL+LSGIGP   L EV IPV
Sbjct: 286 IDPNTRQTTGVEYVDKSGNLKRVYARKEVILSAGSIATPKLLMLSGIGPYHDLLEVGIPV 345

Query: 451 KQDLRVGENLKLNAQFTGPV----MAFSAPLKRTVYSQEMVFKYLVNRIGPLSNM 501
            QDL VG N++ N    GP+       S+ +      Q  V  +L +R G ++N+
Sbjct: 346 VQDLPVGHNVQ-NHVGMGPISVKLSNSSSHITSIEKMQNDVTLWLNSRRGAMTNV 399

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|405978093|gb|EKC42507.1| Glucose dehydrogenase [acceptor] [Crassostrea gigas]

 Score =  216 bits (551), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 138/315 (43%), Positives = 184/315 (58%), Gaps = 15/315 (4%)

Query: 151 PDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGM 207
           P ++ +V +   +D IIVGA  AGCVLA RLSE   + VLL+EAGG   D P+  R+P  
Sbjct: 38  PRVSGHVSANSSYDYIIVGAGTAGCVLATRLSEYPDISVLLLEAGGSEEDNPV-IRVPFA 96

Query: 208 SSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF 267
           +  L  SE D AY  EP Q A LG+   R     GK LGGS ++ N++Y RG  +DY+ +
Sbjct: 97  ALELQNSEVDWAYRTEPQQKACLGMDKQRCAWPRGKVLGGSGSINNLIYVRGNRHDYDGW 156

Query: 268 AKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFET 327
           A+ G  GW Y + L YF+KSED +   +  S A  G  G LPV   K+     + +I+  
Sbjct: 157 AREGCKGWSYKDVLPYFIKSEDIQISEFRNS-AYRGKGGPLPV---KDGTVTPLADIYRQ 212

Query: 328 SAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKV 387
           + +ELGY    D N R    G+         G R+S A A+L P A  R NL+V+  + V
Sbjct: 213 AMEELGYTV-TDCNGR-TQTGYCPTQENVMGGERWSTARAFLRP-AMNRPNLHVIMNAHV 269

Query: 388 TKVIINDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEV 446
           TK I+ D+ + TGV ++      TVR T  KEV+LTAGAI N QLL+LSGIGPK HL ++
Sbjct: 270 TK-ILTDKKMVTGVSFIKDNIKHTVRAT--KEVVLTAGAINNPQLLMLSGIGPKKHLQQM 326

Query: 447 KIPVKQDLRVGENLK 461
            IPV  DL VG+NL+
Sbjct: 327 NIPVMADLPVGDNLQ 341

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

>gi|350425619|ref|XP_003494178.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus impatiens]

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 194/637 (30%), Positives = 295/637 (46%), Gaps = 108/637 (16%)

Query: 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYL 221
            +D I+VG  +AG V+A+RLSE+    VLL+EAGGD      IP ++  L L++ D  Y 
Sbjct: 50  AYDFIVVGGGSAGAVVASRLSEMEEWNVLLLEAGGDGNAVYDIPSLADNLQLTKIDWEYT 109

Query: 222 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 281
            EP+      + N R +   GK LGGSS + ++LY RG+  DY+ + + G  GW Y + L
Sbjct: 110 TEPNNSYCRAMENGRCRWPRGKLLGGSSGINSMLYVRGSKKDYDIWEQQGNPGWSYRDVL 169

Query: 282 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN 341
            YF+KSED R+  Y ++   H T GYL V   + +    +   F  + QE+GY   +D+N
Sbjct: 170 PYFLKSEDNRNHSYAKT-PYHSTGGYLTV--EEAQWRTPLAAAFIQAGQEMGYES-RDIN 225

Query: 342 DRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-ATG 400
                 GF    G  R G R S A A+L P A  R NL+V   + VTK++I+  +  A G
Sbjct: 226 GER-QTGFMIPQGTIRDGSRCSTAKAFLRP-ARMRKNLHVAMEAFVTKILIDSSSKKAYG 283

Query: 401 VEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENL 460
           VE+V + G+T+RV             AN ++++  G                        
Sbjct: 284 VEFVRN-GQTLRVR------------ANKEVIVSGG------------------------ 306

Query: 461 KLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQ 520
                              T+ S +++   +++ IGP            HL E +IPV Q
Sbjct: 307 -------------------TINSPQLL---MLSGIGPKE----------HLSEHRIPVIQ 334

Query: 521 DLRVGENLKLNAQFTG-------PVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWS 573
           DLRVG NL+ +    G        + +  + +    Y    + +Y ++   PLS      
Sbjct: 335 DLRVGHNLQDHVGVGGLMFLVNEEISSIESKITNISY----ILEYAMSGDSPLSTLATVE 390

Query: 574 FTGYIDTLQNTAR---PDLEIHLLYFQQN-----DIRNMCKIKRAYDFNDEVQTAYVNLN 625
            T +I+T    A    PD+++H +    N     + R + +     +F D V   Y  L 
Sbjct: 391 GTCFINTKYANASDDFPDIQLHFMSSGPNTEIFREDRGLTR-----EFYDAV---YGKLG 442

Query: 626 KRTDMGVISM--SLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRL 683
            R   G  S   +L+ PKS G V L+S  P   P I      EPED+ATL+ G  ++  L
Sbjct: 443 GR---GSWSAFPALLRPKSRGVVKLRSNSPFDHPLIYPNYFKEPEDMATLVEGAKFVYEL 499

Query: 684 EQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNA 743
            +T++ +  G  +       C   P  +   W C  R +  T  +PVGT  MG   D NA
Sbjct: 500 SKTDSFKRYGSEMNPTPFPGCKHIPMSNDSFWECMARFVPVTIYHPVGTCKMGPKSDANA 559

Query: 744 VVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
           VV   L+V G+ GLRV D S++PN +   ++A + ++
Sbjct: 560 VVDSRLRVHGVAGLRVIDASIMPNQVSGNTNAPTIMI 596

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1381
FB|FBgn0030593	623	CG9512 [Drosophila melanogaste	0.213	0.473	0.386	5.5e-86
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.261	0.576	0.362	1.6e-82
FB|FBgn0039415	616	CG6142 [Drosophila melanogaste	0.243	0.545	0.384	4.6e-76
FB|FBgn0030589	622	CG9519 [Drosophila melanogaste	0.211	0.469	0.403	4.6e-71
FB|FBgn0001112	625	Gld "Glucose dehydrogenase" [D	0.231	0.512	0.369	2e-69
UNIPROTKB|Q47YL1	539	CPS_3434 "Oxidoreductase, GMC	0.209	0.536	0.416	2.2e-58
TIGR_CMR|CPS_3434	539	CPS_3434 "oxidoreductase, GMC	0.209	0.536	0.416	2.2e-58
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.240	0.472	0.399	1.4e-53
TIGR_CMR|CPS_4010	561	CPS_4010 "choline dehydrogenas	0.209	0.516	0.373	6e-53
TIGR_CMR|SPO_2359	535	SPO_2359 "oxidoreductase, GMC	0.231	0.598	0.361	1.2e-51

FB|FBgn0030593 CG9512 [Drosophila melanogaster (taxid:7227)]

 Score = 503 (182.1 bits), Expect = 5.5e-86, Sum P(2) = 5.5e-86
 Identities = 117/303 (38%), Positives = 173/303 (57%)

Query:   163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
             +D I++G+  +G V+A RL+EV + KVLL+EAGGD PI +           SE+D  Y +
Sbjct:    58 YDFIVIGSGTSGAVVAGRLAEVKNWKVLLLEAGGDPPIETEFVAWHMATQFSEWDWQYHS 117

Query:   223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
             +P+  A + ++        GK LGG++ +  ++Y RGT  D++++ + G  GWGYDE LK
Sbjct:   118 KPNGRACMAMKGESCHWPRGKMLGGTNGMNAMIYARGTRKDFDDWEERGNPGWGYDEVLK 177

Query:   283 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMND 342
             +F K+ED RS   +     HG  G  P+GL     +N  R       QE+GY    D  +
Sbjct:   178 HFRKAEDLRSTRPDYKPGDHGVGG--PMGLNNYVSDNEFRTTIRAGMQEMGYGSAPDFTE 235

Query:   343 RYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRT-NLYVLKRSKVTKVIINDQNVATGV 401
                 VG  ++ G    G R + A ++L     K T NL++L+ + V K+ ++  N A  V
Sbjct:   236 GSF-VGQMDILGTQDGGRRITTARSHLK----KNTPNLHILRHAHVKKINLDRNNRAESV 290

Query:   402 EYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLK 461
              +V+   +   V A+KEVI++AGAI + Q+LLLSGIGP  HL  + IPVK DL VGENLK
Sbjct:   291 TFVHRGKKEYTVKASKEVIVSAGAIGSPQILLLSGIGPADHLKSLGIPVKLDLPVGENLK 350

Query:   462 LNA 464
              +A
Sbjct:   351 DHA 353

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 535 (193.4 bits), Expect = 1.6e-82, Sum P(2) = 1.6e-82
 Identities = 137/378 (36%), Positives = 207/378 (54%)

Query:   131 WPYPRLEKE-RYNIYRSVIYPPDMTPYVKSGDC----FDIIIVGASAAGCVLANRLSEVS 185
             W  P L     Y  Y  +I  P+  P    GD     +D I++GA +AG V+ANRL+EV 
Sbjct:    24 WFIPMLMAAVAYFQYEEII-DPESKPSDVGGDDILDHYDFIVIGAGSAGAVVANRLTEVE 82

Query:   186 SLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGL 245
             +  VLL+EAGGD    + +P M+  L LS+ D  Y  EPS  + L ++  R     GK L
Sbjct:    83 NWNVLLLEAGGDETELTDVPLMAGYLQLSKIDWQYKTEPSGTSCLAMQGGRCNWPRGKVL 142

Query:   246 GGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQ 305
             GGSS +  +LY RG+ +DY+N+  +G   W Y + L YF KSED  +  Y  +   H T 
Sbjct:   143 GGSSVLNYMLYLRGSKHDYDNWEAMGNPSWSYRDALYYFKKSEDNTNQ-YLANTPYHATG 201

Query:   306 GYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAA 365
             GYL VG  +   +  +   F  +  E+GY   +D+N   +  GF    G TR G R S +
Sbjct:   202 GYLTVG--EAPYHTPLAASFVEAGVEMGYE-NRDLNGEKM-TGFMIAQGTTRRGSRCSTS 257

Query:   366 DAYLTPIAGKRTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKGETVRVTANKEVILTAG 424
              A+L P A  R NL++   S VT+++I+    +A GVE+V  + +   V A KEV+L+ G
Sbjct:   258 KAFLRP-ARLRPNLHISMNSHVTRIMIDPVTKLAFGVEFVKDQ-KLYHVRATKEVVLSGG 315

Query:   425 AIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPL---KRTV 481
             ++ + QLL+LSG+GP+  L + +IP+ ++L VGENL+ +    G     + P+   +   
Sbjct:   316 SVNSPQLLMLSGVGPRKELAKHRIPLIKELSVGENLQDHIGLGGLTFLVNQPVSIVENRF 375

Query:   482 YSQEMVFKYLVNRIGPLS 499
             ++   V +Y+V   GPL+
Sbjct:   376 HTMSTVLQYVVFGQGPLT 393

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)]

 Score = 534 (193.0 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
 Identities = 135/351 (38%), Positives = 198/351 (56%)

Query:   151 PDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSV 210
             PD T ++     +D IIVGA +AGCV+ANRLSE+SS  VLL+EAG      S +P  +++
Sbjct:    39 PDTTRFLPE---YDFIIVGAGSAGCVMANRLSEISSASVLLLEAGDQETFISDVPLTAAL 95

Query:   211 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 270
               ++ ++  Y AEP++ A  G++        G+G+GG+S +  +LY RG   DY+ +A  
Sbjct:    96 TQMTRYNWGYKAEPTEHACQGLKGGVCNWPKGRGVGGTSLINFMLYTRGHRRDYDEWAAA 155

Query:   271 GYNGWGYDETLKYFVKSEDYRSVIYNESKA-VHGTQGYLPVGLFKNKENNIIREIFETSA 329
               +GW YDE L YF KSE  R  I    K+  HG  G L V  + +  + +++  F  S 
Sbjct:   156 NNSGWSYDELLPYFRKSE--RIGIPELYKSPYHGRNGQLDVQ-YTDYRSQLLKA-FLKSG 211

Query:   330 QELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTK 389
             +E+GY    D N  ++ +GFA      R G R S + A++ P+  ++ NL++  +S VT+
Sbjct:   212 REMGYEIT-DPNGEHL-MGFARSQATIRNGRRCSTSKAFIQPVVNRK-NLHISMKSWVTR 268

Query:   390 VIIND-QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI 448
             +II+     ATGVE+V  +   V V A KEVIL+AG IA+ QLL+LSGIGP  HL E  I
Sbjct:   269 LIIDPITKTATGVEFVKQRQRYV-VRARKEVILSAGTIASPQLLMLSGIGPAEHLREHNI 327

Query:   449 PVKQDLRVGENLKLNAQFTGPVMAF--SAPLKRTVYSQEMVFKYLVNRIGP 497
              V QDL VG NL+ +    G V     S      + +   +F+Y+    GP
Sbjct:   328 TVMQDLPVGYNLQDHITLNGLVFVVNDSTVNDARLLNPSDIFRYIFAGQGP 378

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)]

 Score = 486 (176.1 bits), Expect = 4.6e-71, Sum P(2) = 4.6e-71
 Identities = 121/300 (40%), Positives = 167/300 (55%)

Query:   163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
             +D I+VGA  AGC LA RLSE    +VLL+EAGG       IP ++ +L L E +  Y  
Sbjct:    62 YDFIVVGAGTAGCALAARLSENPRWRVLLLEAGGPENYAMDIPIVAHLLQLGEINWKYKT 121

Query:   223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
             EPS    L + N R     GK +GGSS +  ++Y RG   DY+ +A+LG  GW Y+E L 
Sbjct:   122 EPSNSYCLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWARLGNPGWSYEEVLP 181

Query:   283 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMND 342
             YF K E   SV+ +  + + G  G  PV +  ++    I + F  + Q+ G P      D
Sbjct:   182 YFKKYEG--SVVPDADENLVGRNG--PVKVSYSETRTRIADAFVGATQDAGLPRGDYNGD 237

Query:   343 RYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-ATGV 401
             + + V +  L        R+S+  AYL PI GKR NL+V K + VTK++I+ Q   A G+
Sbjct:   238 KQIRVSY--LQANIYNETRWSSNRAYLYPIKGKRRNLHVKKNALVTKILIDPQTKSAFGI 295

Query:   402 EYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLK 461
               V   G+  ++ A KEVIL+AGAI   QLL+LSG+GP  HL E+ I    DL VG NL+
Sbjct:   296 -IVKMDGKMQKILARKEVILSAGAINTPQLLMLSGVGPAKHLREMGIKPLADLAVGYNLQ 354

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0001112 Gld "Glucose dehydrogenase" [Drosophila melanogaster (taxid:7227)]

 Score = 479 (173.7 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
 Identities = 123/333 (36%), Positives = 182/333 (54%)

Query:   163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
             +D I++G  +AG V+A+RLSEV   KVLLIEAGGD P+ ++IP M      S+ D+ Y  
Sbjct:    65 YDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124

Query:   223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
             EP   A L     R     GK LGG+S +  ++Y RG   DY+++A  G  GW Y++ L 
Sbjct:   125 EPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLP 184

Query:   283 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMND 342
             +F KSED    +       H   G LPVG F    N  +      + +ELG+    D+N 
Sbjct:   185 FFKKSEDNLD-LDEVGTEYHAKGGLLPVGKFPY--NPPLSYAILKAGEELGFSV-HDLNG 240

Query:   343 RYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND--QNVATG 400
             +    GF       R G+R+S+A A+L P A  R NL++L  +  TK++I+   +NV  G
Sbjct:   241 QN-STGFMIAQMTARNGIRYSSARAFLRP-ARMRNNLHILLNTTATKILIHPHTKNVL-G 297

Query:   401 VEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGEN 459
             VE  +  G T ++   KEV+L+AGA+ +  +LLLSG+GPK  L +V +    +L  VG+N
Sbjct:   298 VEVSDQFGSTRKILVKKEVVLSAGAVNSPHILLLSGVGPKDELQQVNVRTVHNLPGVGKN 357

Query:   460 LKLNAQ-FTGPVM--AFSAPLKRTVYSQEMVFK 489
             L  +   FT   +  A +APL      + ++F+
Sbjct:   358 LHNHVTYFTNFFIDDADTAPLNWATAMEYLLFR 390

GO:0004344 "glucose dehydrogenase activity" evidence=NAS;TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0008364 "pupal chitin-based cuticle development" evidence=TAS

GO:0042335 "cuticle development" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0046693 "sperm storage" evidence=IMP;TAS

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|Q47YL1 CPS_3434 "Oxidoreductase, GMC family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 459 (166.6 bits), Expect = 2.2e-58, Sum P(3) = 2.2e-58
 Identities = 129/310 (41%), Positives = 182/310 (58%)

Query:   158 KSGDC-FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT-PIHSRIPG-MSSVLSLS 214
             KS D  FD IIVGA +AGCVLANRL+E     V L+EAG D   +  + PG  S+ + L 
Sbjct:     3 KSQDNNFDYIIVGAGSAGCVLANRLTEDGKFNVCLLEAGSDNNSMLVKTPGAFSAFMFLK 62

Query:   215 EFDHAYLAEPSQFAGLGVRNAR-IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYN 273
             +F+ ++ A+P +     +RN   + +  G+GLGGSSA   +LY RG   DY+++A+LG  
Sbjct:    63 KFNWSFDAKPRK----DIRNGEPLFVPRGRGLGGSSATNAMLYIRGQKQDYDHWAELGNE 118

Query:   274 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 333
             GW +D+ L YF KSE        ES+ +HG  G L V   +     I +   E S Q+ G
Sbjct:   119 GWSFDDILPYFKKSETNSR---GESE-LHGGAGPLQV-TDRPAFYEISKRYIEAS-QQAG 172

Query:   334 YPCPKDMNDRYVD-VGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVII 392
             +    D N    + VG+ +     + G R SAA AYL PI   R NL VL  ++V+KV++
Sbjct:   173 FKVTDDFNGSDQEGVGYYQCT--IKDGKRCSAAHAYLLPILS-RPNLTVLTYAQVSKVLL 229

Query:   393 NDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQ 452
              D+  A GV+ V  KGE   ++ANKEVIL+ G+IA+ QLL+LSGIG K+ L +  I    
Sbjct:   230 KDKQ-AYGVD-VYVKGEKRTLSANKEVILSGGSIASPQLLMLSGIGDKSELTQHGIDCVH 287

Query:   453 DLR-VGENLK 461
             +L+ VG+NL+
Sbjct:   288 ELKGVGKNLR 297

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3434 CPS_3434 "oxidoreductase, GMC family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 459 (166.6 bits), Expect = 2.2e-58, Sum P(3) = 2.2e-58
 Identities = 129/310 (41%), Positives = 182/310 (58%)

Query:   158 KSGDC-FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT-PIHSRIPG-MSSVLSLS 214
             KS D  FD IIVGA +AGCVLANRL+E     V L+EAG D   +  + PG  S+ + L 
Sbjct:     3 KSQDNNFDYIIVGAGSAGCVLANRLTEDGKFNVCLLEAGSDNNSMLVKTPGAFSAFMFLK 62

Query:   215 EFDHAYLAEPSQFAGLGVRNAR-IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYN 273
             +F+ ++ A+P +     +RN   + +  G+GLGGSSA   +LY RG   DY+++A+LG  
Sbjct:    63 KFNWSFDAKPRK----DIRNGEPLFVPRGRGLGGSSATNAMLYIRGQKQDYDHWAELGNE 118

Query:   274 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 333
             GW +D+ L YF KSE        ES+ +HG  G L V   +     I +   E S Q+ G
Sbjct:   119 GWSFDDILPYFKKSETNSR---GESE-LHGGAGPLQV-TDRPAFYEISKRYIEAS-QQAG 172

Query:   334 YPCPKDMNDRYVD-VGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVII 392
             +    D N    + VG+ +     + G R SAA AYL PI   R NL VL  ++V+KV++
Sbjct:   173 FKVTDDFNGSDQEGVGYYQCT--IKDGKRCSAAHAYLLPILS-RPNLTVLTYAQVSKVLL 229

Query:   393 NDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQ 452
              D+  A GV+ V  KGE   ++ANKEVIL+ G+IA+ QLL+LSGIG K+ L +  I    
Sbjct:   230 KDKQ-AYGVD-VYVKGEKRTLSANKEVILSGGSIASPQLLMLSGIGDKSELTQHGIDCVH 287

Query:   453 DLR-VGENLK 461
             +L+ VG+NL+
Sbjct:   288 ELKGVGKNLR 297

GO:0008150 "biological_process" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=ISS

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 555 (200.4 bits), Expect = 1.4e-53, P = 1.4e-53
 Identities = 137/343 (39%), Positives = 198/343 (57%)

Query:   163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
             +D I+VG+ +AG V+ANRLSEV   KVLLIEAG D    S +P +++ L LS+ D AY  
Sbjct:    57 YDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDWAYKT 116

Query:   223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
             EPS  A LG++N R     G+ LGGSS +  +LY RG  +DY+++A LG  GW YD  L+
Sbjct:   117 EPSTKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWASLGNPGWDYDNVLR 176

Query:   283 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMND 342
             YF KSED R+  Y  +   HG  G L V   ++  ++ +   F  +  +LGY   +D+N 
Sbjct:   177 YFKKSEDNRNP-YLANNKYHGRGGLLTVQ--ESPWHSPLVAAFVEAGTQLGYD-NRDING 232

Query:   343 RYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-ATGV 401
                  GF    G  R G R S A A+L PI   R N ++   S VT+VII    + A  V
Sbjct:   233 AK-QAGFMIAQGTIRRGSRCSTAKAFLRPIR-MRKNFHLSMNSHVTRVIIEPGTMRAQAV 290

Query:   402 EYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLK 461
             E+V   G+  R+ A +EVI++AGAI   QL++LSG+GP+ HL++  I V QDL VGEN++
Sbjct:   291 EFVKH-GKVYRIAARREVIISAGAINTPQLMMLSGLGPRKHLEKHGIRVLQDLPVGENMQ 349

Query:   462 LNAQFTGPVMAFSAPLK--RTVYSQEMV-FKYLVNRIGPLSNM 501
              +    G       P+   +  ++   V F+Y++   GP++ +
Sbjct:   350 DHVGMGGLTFLVDKPVAIVQDRFNPTAVTFQYVLRERGPMTTL 392

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

TIGR_CMR|CPS_4010 CPS_4010 "choline dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 425 (154.7 bits), Expect = 6.0e-53, Sum P(3) = 6.0e-53
 Identities = 115/308 (37%), Positives = 170/308 (55%)

Query:   163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSV-LSLSEFDHAY 220
             +D IIVGA +AGCVLANRLSE  +  VLL+E GG D  I  ++P   S+ ++ S++   +
Sbjct:     6 YDYIIVGAGSAGCVLANRLSEDGNSNVLLLETGGSDKSIFIQMPTALSIPMNSSKYAWQF 65

Query:   221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDET 280
               EP  F    + N R+    GK LGGSS++  ++Y RG + D++ + + G + W Y   
Sbjct:    66 ETEPEPF----IDNRRMHCPRGKVLGGSSSINGMVYVRGHARDFDEWQQYGADNWDYAHC 121

Query:   281 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFK-NKENNIIREIFETSAQELGYPCPKD 339
             L YF K+E +    +   +   G  G  P+G+   NK  N + + F  +  + GY    D
Sbjct:   122 LPYFKKAETWA---FGGDE-YRGNDG--PLGVNNGNKMANPLYKAFVNAGVDAGYFSTDD 175

Query:   340 MNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVAT 399
              N    + GF  +    + G+R S A+AYL P A  R NL V+  + V KV++ ++  A 
Sbjct:   176 YNGSQQE-GFGAMHMTVKDGVRCSTANAYLRP-AMTRKNLTVITHALVHKVLLENKT-AV 232

Query:   400 GVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGE 458
             G+ Y   KG+ + V  NKEVIL+AG+I +  LL LSGIG K  L E  I    DL  VG+
Sbjct:   233 GIRY-ERKGQVLDVKVNKEVILSAGSIGSPHLLQLSGIGAKNVLTEAGIETLHDLPGVGQ 291

Query:   459 NLKLNAQF 466
             NL+ + +F
Sbjct:   292 NLQDHLEF 299

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0019285 "glycine betaine biosynthetic process from choline" evidence=ISS

TIGR_CMR|SPO_2359 SPO_2359 "oxidoreductase, GMC family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 437 (158.9 bits), Expect = 1.2e-51, Sum P(2) = 1.2e-51
 Identities = 125/346 (36%), Positives = 188/346 (54%)

Query:   164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-D-TP-IHSRIPGMSSVLSLSEFDHAY 220
             D I+VG  +AGCVLANRLS+  + +V+L+EAG  D  P IH  + G    +     D  Y
Sbjct:     7 DYIVVGGGSAGCVLANRLSKDPANRVVLLEAGPRDWNPWIHVPV-GYFKTMHNPSVDWCY 65

Query:   221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDET 280
               E  +    G+    I    GK LGGSS++  +LY RG   DY+ + ++G  GWG+D+ 
Sbjct:    66 RTEKDK----GLNGRAIDWPRGKVLGGSSSLNGLLYVRGQPEDYDRWRQMGNEGWGWDDV 121

Query:   281 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 340
             L  F +SE+          A HGT G L V   + +    I + +  +AQ  GYP   D 
Sbjct:   122 LPLFKRSENQE----RGPDAFHGTGGELSVSNMRLQRP--ICDAWVAAAQNAGYPFNPDY 175

Query:   341 NDRYVD-VGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVAT 399
             N    + VG+ +L   TR G R S+A A+L P A KR NL ++ +++V++VI+ D   AT
Sbjct:   176 NGATQEGVGYFQLT--TRNGRRCSSAVAFLNP-ARKRPNLEIITKAQVSRVIVEDGR-AT 231

Query:   400 GVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDL-RVGE 458
             GV Y +  G    +T ++EV+L++GAI + Q+L+LSGIG    L    I V  DL  VG+
Sbjct:   232 GVRYFDGSGREQTITCSREVVLSSGAIGSPQILMLSGIGEGEQLKANGIEVIHDLPAVGK 291

Query:   459 NLKLNAQFTGPVMAFSAPLK----RTVYSQEMVF-KYLVNRIGPLS 499
             N++ + Q    V   + P      R++++Q  +  KY + R GP++
Sbjct:   292 NMQDHLQ-ARLVFKCNEPTLNDEVRSLFNQARIAAKYALFRSGPMT 336

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	1381
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	1e-69
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	7e-61
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	1e-60
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	1e-43
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	3e-33
pfam05199	139	pfam05199, GMC_oxred_C, GMC oxidoreductase	5e-31
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	3e-20
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	4e-19
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	7e-19
pfam10101	738	pfam10101, DUF2339, Predicted membrane protein (DU	1e-14
pfam10101	738	pfam10101, DUF2339, Predicted membrane protein (DU	2e-14
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	4e-14
pfam10101	738	pfam10101, DUF2339, Predicted membrane protein (DU	8e-14
COG1807	535	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transfe	6e-13
COG1807	535	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transfe	6e-13
COG1807	535	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transfe	4e-12
COG1807	535	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transfe	5e-12
COG1807	535	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transfe	1e-11
COG1807	535	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transfe	1e-11
pfam09586	835	pfam09586, YfhO, Bacterial membrane protein YfhO	1e-11
COG1287	773	COG1287, COG1287, Uncharacterized membrane protein	4e-11
COG1287	773	COG1287, COG1287, Uncharacterized membrane protein	4e-11
COG1287	773	COG1287, COG1287, Uncharacterized membrane protein	4e-11
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	5e-11
COG1287	773	COG1287, COG1287, Uncharacterized membrane protein	9e-11
COG1287	773	COG1287, COG1287, Uncharacterized membrane protein	1e-10
pfam09586	835	pfam09586, YfhO, Bacterial membrane protein YfhO	2e-10
pfam09586	835	pfam09586, YfhO, Bacterial membrane protein YfhO	2e-10
pfam09586	835	pfam09586, YfhO, Bacterial membrane protein YfhO	2e-10
pfam09586	835	pfam09586, YfhO, Bacterial membrane protein YfhO	2e-10
pfam09586	835	pfam09586, YfhO, Bacterial membrane protein YfhO	2e-10
pfam09586	835	pfam09586, YfhO, Bacterial membrane protein YfhO	2e-10
COG1287	773	COG1287, COG1287, Uncharacterized membrane protein	2e-10
COG1807	535	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transfe	3e-10
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	3e-10
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	3e-10
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	3e-10
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	3e-10
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	3e-10
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	3e-10
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	3e-10
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	3e-10
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	3e-10
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	3e-10
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	3e-10
pfam10101	738	pfam10101, DUF2339, Predicted membrane protein (DU	4e-10
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	4e-10
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	4e-10
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	6e-10
COG1287	773	COG1287, COG1287, Uncharacterized membrane protein	7e-10
pfam10101	738	pfam10101, DUF2339, Predicted membrane protein (DU	2e-09
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	2e-09
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	2e-09
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	2e-09
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	2e-09
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	2e-09
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	2e-09
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	2e-09
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	2e-09
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	2e-09
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	3e-09
COG3307	424	COG3307, RfaL, Lipid A core - O-antigen ligase and	3e-09
pfam09586	835	pfam09586, YfhO, Bacterial membrane protein YfhO	5e-09
pfam09586	835	pfam09586, YfhO, Bacterial membrane protein YfhO	5e-09
COG3307	424	COG3307, RfaL, Lipid A core - O-antigen ligase and	5e-09
COG3307	424	COG3307, RfaL, Lipid A core - O-antigen ligase and	1e-08
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	2e-08
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	3e-08
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	3e-08
COG3307	424	COG3307, RfaL, Lipid A core - O-antigen ligase and	3e-08
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	4e-08
COG3307	424	COG3307, RfaL, Lipid A core - O-antigen ligase and	5e-08
COG0815	518	COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce	6e-08
COG0815	518	COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce	6e-08
COG0815	518	COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce	6e-08
COG0815	518	COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce	6e-08
COG0815	518	COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce	6e-08
COG0815	518	COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce	6e-08
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	9e-08
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	9e-08
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	9e-08
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	9e-08
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	9e-08
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	9e-08
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	9e-08
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	9e-08
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	9e-08
COG0815	518	COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce	9e-08
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-07
pfam10101	738	pfam10101, DUF2339, Predicted membrane protein (DU	2e-07
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-07
COG4485	858	COG4485, COG4485, Predicted membrane protein [Func	2e-07
COG4485	858	COG4485, COG4485, Predicted membrane protein [Func	3e-07
COG4485	858	COG4485, COG4485, Predicted membrane protein [Func	3e-07
COG4485	858	COG4485, COG4485, Predicted membrane protein [Func	3e-07
COG4485	858	COG4485, COG4485, Predicted membrane protein [Func	3e-07
COG4485	858	COG4485, COG4485, Predicted membrane protein [Func	3e-07
COG4485	858	COG4485, COG4485, Predicted membrane protein [Func	3e-07
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	3e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	3e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	3e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	3e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	3e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	3e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	3e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	3e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	3e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	3e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	3e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	3e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	3e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	3e-07
COG1807	535	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transfe	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	4e-07
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	4e-07
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	5e-07
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	5e-07
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	5e-07
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	5e-07
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	5e-07
COG3307	424	COG3307, RfaL, Lipid A core - O-antigen ligase and	1e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	1e-06
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	1e-06
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	1e-06
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	1e-06
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	1e-06
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	1e-06
COG1835	386	COG1835, COG1835, Predicted acyltransferases [Lipi	1e-06
COG1835	386	COG1835, COG1835, Predicted acyltransferases [Lipi	1e-06
COG1835	386	COG1835, COG1835, Predicted acyltransferases [Lipi	1e-06
COG1835	386	COG1835, COG1835, Predicted acyltransferases [Lipi	1e-06
COG1835	386	COG1835, COG1835, Predicted acyltransferases [Lipi	1e-06
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	1e-06
COG1807	535	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transfe	2e-06
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	2e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	2e-06
COG4485	858	COG4485, COG4485, Predicted membrane protein [Func	2e-06
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	2e-06
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	2e-06
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	2e-06
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	2e-06
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	2e-06
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	2e-06
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	2e-06
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	2e-06
MTH00095	527	MTH00095, ND5, NADH dehydrogenase subunit 5; Provi	2e-06
pfam14351	321	pfam14351, DUF4401, Domain of unknown function (DU	2e-06
COG0658	453	COG0658, ComEC, Predicted membrane metal-binding p	2e-06
COG0658	453	COG0658, ComEC, Predicted membrane metal-binding p	2e-06
COG0658	453	COG0658, ComEC, Predicted membrane metal-binding p	2e-06
COG0658	453	COG0658, ComEC, Predicted membrane metal-binding p	2e-06
COG4585	365	COG4585, COG4585, Signal transduction histidine ki	3e-06
pfam14351	321	pfam14351, DUF4401, Domain of unknown function (DU	3e-06
pfam14351	321	pfam14351, DUF4401, Domain of unknown function (DU	3e-06
COG0658	453	COG0658, ComEC, Predicted membrane metal-binding p	3e-06
TIGR04286	920	TIGR04286, MSEP-CTERM, MSEP-CTERM protein	3e-06
COG1287	773	COG1287, COG1287, Uncharacterized membrane protein	4e-06
MTH00095	527	MTH00095, ND5, NADH dehydrogenase subunit 5; Provi	4e-06
TIGR04286	920	TIGR04286, MSEP-CTERM, MSEP-CTERM protein	4e-06
TIGR04286	920	TIGR04286, MSEP-CTERM, MSEP-CTERM protein	4e-06
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	4e-06
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	5e-06
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	5e-06
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	5e-06
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	5e-06
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	5e-06
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	5e-06
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	5e-06
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	5e-06
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	5e-06
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	5e-06
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	5e-06
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	5e-06
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	5e-06
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	5e-06
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	7e-06
COG1835	386	COG1835, COG1835, Predicted acyltransferases [Lipi	7e-06
TIGR04286	920	TIGR04286, MSEP-CTERM, MSEP-CTERM protein	7e-06
COG1368	650	COG1368, MdoB, Phosphoglycerol transferase and rel	8e-06
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	8e-06
COG3307	424	COG3307, RfaL, Lipid A core - O-antigen ligase and	9e-06
COG4485	858	COG4485, COG4485, Predicted membrane protein [Func	9e-06
pfam05297	382	pfam05297, Herpes_LMP1, Herpesvirus latent membran	9e-06
TIGR04286	920	TIGR04286, MSEP-CTERM, MSEP-CTERM protein	9e-06
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	1e-05
COG0815	518	COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce	1e-05
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	1e-05
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	1e-05
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	1e-05
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	1e-05
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	1e-05
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	1e-05
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	1e-05
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	1e-05
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	1e-05
pfam14351	321	pfam14351, DUF4401, Domain of unknown function (DU	1e-05
COG3307	424	COG3307, RfaL, Lipid A core - O-antigen ligase and	2e-05
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	2e-05
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	2e-05
pfam14351	321	pfam14351, DUF4401, Domain of unknown function (DU	2e-05
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	2e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-05
COG3356	578	COG3356, COG3356, Predicted membrane protein [Func	2e-05
COG3307	424	COG3307, RfaL, Lipid A core - O-antigen ligase and	3e-05
COG0815	518	COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce	3e-05
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	3e-05
MTH00091	273	MTH00091, ND2, NADH dehydrogenase subunit 2; Provi	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	3e-05
pfam09586	835	pfam09586, YfhO, Bacterial membrane protein YfhO	4e-05
COG3307	424	COG3307, RfaL, Lipid A core - O-antigen ligase and	4e-05
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	4e-05
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	4e-05
pfam14351	321	pfam14351, DUF4401, Domain of unknown function (DU	4e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-05
COG3356	578	COG3356, COG3356, Predicted membrane protein [Func	4e-05
COG3356	578	COG3356, COG3356, Predicted membrane protein [Func	4e-05
COG3356	578	COG3356, COG3356, Predicted membrane protein [Func	4e-05
COG3356	578	COG3356, COG3356, Predicted membrane protein [Func	4e-05
COG3356	578	COG3356, COG3356, Predicted membrane protein [Func	4e-05
COG3356	578	COG3356, COG3356, Predicted membrane protein [Func	4e-05
COG0658	453	COG0658, ComEC, Predicted membrane metal-binding p	5e-05
COG4984	644	COG4984, COG4984, Predicted membrane protein [Func	5e-05
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	6e-05
pfam14351	321	pfam14351, DUF4401, Domain of unknown function (DU	6e-05
COG3356	578	COG3356, COG3356, Predicted membrane protein [Func	6e-05
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	6e-05
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	6e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	6e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	6e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	6e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	6e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	6e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	6e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	6e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	6e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	6e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	6e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	6e-05
PRK00302	505	PRK00302, lnt, apolipoprotein N-acyltransferase; R	6e-05
PRK00302	505	PRK00302, lnt, apolipoprotein N-acyltransferase; R	6e-05
PRK00302	505	PRK00302, lnt, apolipoprotein N-acyltransferase; R	6e-05
COG1835	386	COG1835, COG1835, Predicted acyltransferases [Lipi	7e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	7e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	7e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	7e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	7e-05
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	8e-05
COG0348	386	COG0348, NapH, Polyferredoxin [Energy production a	8e-05
COG0348	386	COG0348, NapH, Polyferredoxin [Energy production a	8e-05
COG0348	386	COG0348, NapH, Polyferredoxin [Energy production a	8e-05
COG0348	386	COG0348, NapH, Polyferredoxin [Energy production a	8e-05
COG0348	386	COG0348, NapH, Polyferredoxin [Energy production a	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	8e-05
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	9e-05
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	9e-05
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	9e-05
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	9e-05
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	9e-05
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	9e-05
COG3594	343	COG3594, NolL, Fucose 4-O-acetylase and related ac	9e-05
COG3594	343	COG3594, NolL, Fucose 4-O-acetylase and related ac	9e-05
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	1e-04
MTH00095	527	MTH00095, ND5, NADH dehydrogenase subunit 5; Provi	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	1e-04
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	1e-04
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	1e-04
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	1e-04
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	1e-04
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	1e-04
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	1e-04
COG2194	555	COG2194, COG2194, Predicted membrane-associated, m	2e-04
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	2e-04
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	2e-04
COG1835	386	COG1835, COG1835, Predicted acyltransferases [Lipi	2e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-04
MTH00091	273	MTH00091, ND2, NADH dehydrogenase subunit 2; Provi	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
TIGR03025	445	TIGR03025, EPS_sugtrans, exopolysaccharide biosynt	2e-04
PRK00302	505	PRK00302, lnt, apolipoprotein N-acyltransferase; R	2e-04
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	2e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	2e-04
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	2e-04
MTH00091	273	MTH00091, ND2, NADH dehydrogenase subunit 2; Provi	3e-04
MTH00091	273	MTH00091, ND2, NADH dehydrogenase subunit 2; Provi	3e-04
MTH00091	273	MTH00091, ND2, NADH dehydrogenase subunit 2; Provi	3e-04
MTH00091	273	MTH00091, ND2, NADH dehydrogenase subunit 2; Provi	3e-04
MTH00091	273	MTH00091, ND2, NADH dehydrogenase subunit 2; Provi	3e-04
MTH00091	273	MTH00091, ND2, NADH dehydrogenase subunit 2; Provi	3e-04
MTH00091	273	MTH00091, ND2, NADH dehydrogenase subunit 2; Provi	3e-04
MTH00091	273	MTH00091, ND2, NADH dehydrogenase subunit 2; Provi	3e-04
COG4984	644	COG4984, COG4984, Predicted membrane protein [Func	3e-04
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	3e-04
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	3e-04
COG3594	343	COG3594, NolL, Fucose 4-O-acetylase and related ac	3e-04
pfam03772	270	pfam03772, Competence, Competence protein	3e-04
pfam03772	270	pfam03772, Competence, Competence protein	3e-04
pfam03772	270	pfam03772, Competence, Competence protein	3e-04
pfam03772	270	pfam03772, Competence, Competence protein	3e-04
pfam03772	270	pfam03772, Competence, Competence protein	3e-04
pfam03772	270	pfam03772, Competence, Competence protein	3e-04
pfam03772	270	pfam03772, Competence, Competence protein	3e-04
pfam03772	270	pfam03772, Competence, Competence protein	3e-04
COG2898	538	COG2898, COG2898, Uncharacterized conserved protei	3e-04
pfam01757	326	pfam01757, Acyl_transf_3, Acyltransferase family	3e-04
pfam01757	326	pfam01757, Acyl_transf_3, Acyltransferase family	3e-04
pfam01757	326	pfam01757, Acyl_transf_3, Acyltransferase family	3e-04
pfam01757	326	pfam01757, Acyl_transf_3, Acyltransferase family	3e-04
pfam01757	326	pfam01757, Acyl_transf_3, Acyltransferase family	3e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-04
pfam03901	412	pfam03901, Glyco_transf_22, Alg9-like mannosyltran	3e-04
pfam03901	412	pfam03901, Glyco_transf_22, Alg9-like mannosyltran	3e-04
TIGR01654	679	TIGR01654, bact_immun_7tm, bacteriocin-associated	3e-04
TIGR01654	679	TIGR01654, bact_immun_7tm, bacteriocin-associated	3e-04
TIGR01654	679	TIGR01654, bact_immun_7tm, bacteriocin-associated	3e-04
TIGR01654	679	TIGR01654, bact_immun_7tm, bacteriocin-associated	3e-04
TIGR01654	679	TIGR01654, bact_immun_7tm, bacteriocin-associated	3e-04
TIGR01654	679	TIGR01654, bact_immun_7tm, bacteriocin-associated	3e-04
TIGR01654	679	TIGR01654, bact_immun_7tm, bacteriocin-associated	3e-04
pfam02516	650	pfam02516, STT3, Oligosaccharyl transferase STT3 s	4e-04
COG0348	386	COG0348, NapH, Polyferredoxin [Energy production a	4e-04
COG0348	386	COG0348, NapH, Polyferredoxin [Energy production a	4e-04
COG0348	386	COG0348, NapH, Polyferredoxin [Energy production a	4e-04
COG3594	343	COG3594, NolL, Fucose 4-O-acetylase and related ac	4e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	4e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	4e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	4e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	4e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	4e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	4e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	4e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	4e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	4e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	4e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	4e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	4e-04
pfam11992	321	pfam11992, DUF3488, Domain of unknown function (DU	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	4e-04
COG2898	538	COG2898, COG2898, Uncharacterized conserved protei	4e-04
COG2898	538	COG2898, COG2898, Uncharacterized conserved protei	4e-04
COG2898	538	COG2898, COG2898, Uncharacterized conserved protei	4e-04
COG2898	538	COG2898, COG2898, Uncharacterized conserved protei	4e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	4e-04
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	4e-04
COG5305	552	COG5305, COG5305, Predicted membrane protein [Func	4e-04
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	5e-04
MTH00163	445	MTH00163, ND4, NADH dehydrogenase subunit 4; Provi	5e-04
COG1030	436	COG1030, NfeD, Membrane-bound serine protease (Clp	5e-04
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	5e-04
pfam03772	270	pfam03772, Competence, Competence protein	5e-04
pfam03772	270	pfam03772, Competence, Competence protein	5e-04
pfam03772	270	pfam03772, Competence, Competence protein	5e-04
pfam03772	270	pfam03772, Competence, Competence protein	5e-04
COG2898	538	COG2898, COG2898, Uncharacterized conserved protei	5e-04
COG2898	538	COG2898, COG2898, Uncharacterized conserved protei	5e-04
COG5305	552	COG5305, COG5305, Predicted membrane protein [Func	5e-04
pfam14264	317	pfam14264, Glucos_trans_II, Glucosyl transferase G	5e-04
pfam14264	317	pfam14264, Glucos_trans_II, Glucosyl transferase G	5e-04
pfam14264	317	pfam14264, Glucos_trans_II, Glucosyl transferase G	5e-04
pfam14264	317	pfam14264, Glucos_trans_II, Glucosyl transferase G	5e-04
pfam14264	317	pfam14264, Glucos_trans_II, Glucosyl transferase G	5e-04
pfam14264	317	pfam14264, Glucos_trans_II, Glucosyl transferase G	5e-04
pfam14264	317	pfam14264, Glucos_trans_II, Glucosyl transferase G	5e-04
pfam14264	317	pfam14264, Glucos_trans_II, Glucosyl transferase G	5e-04
pfam14264	317	pfam14264, Glucos_trans_II, Glucosyl transferase G	5e-04
COG4393	405	COG4393, COG4393, Predicted membrane protein [Func	5e-04
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	5e-04
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	5e-04
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	5e-04
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	5e-04
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	5e-04
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	6e-04
COG3594	343	COG3594, NolL, Fucose 4-O-acetylase and related ac	6e-04
pfam03772	270	pfam03772, Competence, Competence protein	6e-04
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	6e-04
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	7e-04
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	7e-04
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	7e-04
pfam03699	771	pfam03699, UPF0182, Uncharacterized protein family	9e-04
pfam01757	326	pfam01757, Acyl_transf_3, Acyltransferase family	9e-04
pfam14351	321	pfam14351, DUF4401, Domain of unknown function (DU	0.001
pfam14351	321	pfam14351, DUF4401, Domain of unknown function (DU	0.001
COG0658	453	COG0658, ComEC, Predicted membrane metal-binding p	0.001
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.001
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	0.001
PRK00302	505	PRK00302, lnt, apolipoprotein N-acyltransferase; R	0.001
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	0.001
COG3594	343	COG3594, NolL, Fucose 4-O-acetylase and related ac	0.001
COG2898	538	COG2898, COG2898, Uncharacterized conserved protei	0.001
pfam01757	326	pfam01757, Acyl_transf_3, Acyltransferase family	0.001
pfam01757	326	pfam01757, Acyl_transf_3, Acyltransferase family	0.001
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	0.001
MTH00165	573	MTH00165, ND5, NADH dehydrogenase subunit 5; Provi	0.001
MTH00165	573	MTH00165, ND5, NADH dehydrogenase subunit 5; Provi	0.001
MTH00165	573	MTH00165, ND5, NADH dehydrogenase subunit 5; Provi	0.001
MTH00165	573	MTH00165, ND5, NADH dehydrogenase subunit 5; Provi	0.001
MTH00165	573	MTH00165, ND5, NADH dehydrogenase subunit 5; Provi	0.001
MTH00165	573	MTH00165, ND5, NADH dehydrogenase subunit 5; Provi	0.001
MTH00165	573	MTH00165, ND5, NADH dehydrogenase subunit 5; Provi	0.001
MTH00165	573	MTH00165, ND5, NADH dehydrogenase subunit 5; Provi	0.001
MTH00165	573	MTH00165, ND5, NADH dehydrogenase subunit 5; Provi	0.001
MTH00165	573	MTH00165, ND5, NADH dehydrogenase subunit 5; Provi	0.001
MTH00165	573	MTH00165, ND5, NADH dehydrogenase subunit 5; Provi	0.001
MTH00165	573	MTH00165, ND5, NADH dehydrogenase subunit 5; Provi	0.001
COG0728	518	COG0728, MviN, Uncharacterized membrane protein, p	0.001
MTH00094	403	MTH00094, ND4, NADH dehydrogenase subunit 4; Provi	0.001
MTH00094	403	MTH00094, ND4, NADH dehydrogenase subunit 4; Provi	0.001
MTH00094	403	MTH00094, ND4, NADH dehydrogenase subunit 4; Provi	0.001
MTH00094	403	MTH00094, ND4, NADH dehydrogenase subunit 4; Provi	0.001
MTH00094	403	MTH00094, ND4, NADH dehydrogenase subunit 4; Provi	0.001
MTH00094	403	MTH00094, ND4, NADH dehydrogenase subunit 4; Provi	0.001
MTH00160	335	MTH00160, ND2, NADH dehydrogenase subunit 2; Provi	0.001
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	0.002
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	0.002
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	0.002
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	0.002
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	0.002
TIGR03023	451	TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate g	0.002
COG2898	538	COG2898, COG2898, Uncharacterized conserved protei	0.002
pfam03901	412	pfam03901, Glyco_transf_22, Alg9-like mannosyltran	0.002
pfam03901	412	pfam03901, Glyco_transf_22, Alg9-like mannosyltran	0.002
pfam03901	412	pfam03901, Glyco_transf_22, Alg9-like mannosyltran	0.002
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	0.002
COG5305	552	COG5305, COG5305, Predicted membrane protein [Func	0.002
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	0.002
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	0.002
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	0.002
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	0.002
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	0.002
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	0.002
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	0.002
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	0.002
pfam05940	379	pfam05940, NnrS, NnrS protein	0.002
COG4652	657	COG4652, COG4652, Uncharacterized protein conserve	0.002
COG4652	657	COG4652, COG4652, Uncharacterized protein conserve	0.002
COG4652	657	COG4652, COG4652, Uncharacterized protein conserve	0.002
COG4652	657	COG4652, COG4652, Uncharacterized protein conserve	0.002
COG4652	657	COG4652, COG4652, Uncharacterized protein conserve	0.002
COG4652	657	COG4652, COG4652, Uncharacterized protein conserve	0.002
COG4652	657	COG4652, COG4652, Uncharacterized protein conserve	0.002
COG0392	322	COG0392, COG0392, Predicted integral membrane prot	0.002
TIGR00546	391	TIGR00546, lnt, apolipoprotein N-acyltransferase	0.002
COG1086	588	COG1086, COG1086, Predicted nucleoside-diphosphate	0.002
COG1835	386	COG1835, COG1835, Predicted acyltransferases [Lipi	0.003
COG4984	644	COG4984, COG4984, Predicted membrane protein [Func	0.003
COG1480	700	COG1480, COG1480, Predicted membrane-associated HD	0.003
COG0348	386	COG0348, NapH, Polyferredoxin [Energy production a	0.003
COG0348	386	COG0348, NapH, Polyferredoxin [Energy production a	0.003
COG0348	386	COG0348, NapH, Polyferredoxin [Energy production a	0.003
TIGR01654	679	TIGR01654, bact_immun_7tm, bacteriocin-associated	0.003
TIGR01654	679	TIGR01654, bact_immun_7tm, bacteriocin-associated	0.003
TIGR01654	679	TIGR01654, bact_immun_7tm, bacteriocin-associated	0.003
COG1377	363	COG1377, FlhB, Flagellar biosynthesis pathway, com	0.003
COG0728	518	COG0728, MviN, Uncharacterized membrane protein, p	0.003
COG0728	518	COG0728, MviN, Uncharacterized membrane protein, p	0.003
COG0728	518	COG0728, MviN, Uncharacterized membrane protein, p	0.003
COG0728	518	COG0728, MviN, Uncharacterized membrane protein, p	0.003
COG0728	518	COG0728, MviN, Uncharacterized membrane protein, p	0.003
pfam05940	379	pfam05940, NnrS, NnrS protein	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
COG0575	265	COG0575, CdsA, CDP-diglyceride synthetase [Lipid m	0.003
PRK05702	359	PRK05702, flhB, flagellar biosynthesis protein Flh	0.003
PRK05702	359	PRK05702, flhB, flagellar biosynthesis protein Flh	0.003
PRK05702	359	PRK05702, flhB, flagellar biosynthesis protein Flh	0.003
PRK05702	359	PRK05702, flhB, flagellar biosynthesis protein Flh	0.003
COG3846	452	COG3846, TrbL, Type IV secretory pathway, TrbL com	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
MTH00091	273	MTH00091, ND2, NADH dehydrogenase subunit 2; Provi	0.004
TIGR03766	483	TIGR03766, TIGR03766, conserved hypothetical integ	0.004
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	0.004
COG1086	588	COG1086, COG1086, Predicted nucleoside-diphosphate	0.004
PRK05702	359	PRK05702, flhB, flagellar biosynthesis protein Flh	0.004
PRK05702	359	PRK05702, flhB, flagellar biosynthesis protein Flh	0.004
PRK05702	359	PRK05702, flhB, flagellar biosynthesis protein Flh	0.004
PRK05702	359	PRK05702, flhB, flagellar biosynthesis protein Flh	0.004
pfam09913	390	pfam09913, DUF2142, Predicted membrane protein (DU	0.004
PRK12291	418	PRK12291, PRK12291, apolipoprotein N-acyltransfera	0.004
PRK12291	418	PRK12291, PRK12291, apolipoprotein N-acyltransfera	0.004
PRK12291	418	PRK12291, PRK12291, apolipoprotein N-acyltransfera	0.004
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	0.004
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	0.004
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	0.004
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	0.004
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	0.004
pfam06728	373	pfam06728, PIG-U, GPI transamidase subunit PIG-U	0.004

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score =  244 bits (625), Expect = 1e-69
 Identities = 121/306 (39%), Positives = 163/306 (53%), Gaps = 23/306 (7%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSL----SEFD 217
           +D II+GA +AGCVLANRLSE   + VLL+EAGG D      I  M + L+       ++
Sbjct: 6   YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQ-MPAALAFPLQGKRYN 64

Query: 218 HAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWG 276
            AY  EP         N R++   GK LGGSS++  ++Y RG + DY+N+A+L G  GW 
Sbjct: 65  WAYETEPEPHMN----NRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWS 120

Query: 277 YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFK-NKENNIIREIFETSAQELGYP 335
           Y + L YF K+E              G  G  P+ + +     N + + F  +  + GYP
Sbjct: 121 YADCLPYFKKAETR----DGGEDDYRGGDG--PLSVTRGKPGTNPLFQAFVEAGVQAGYP 174

Query: 336 CPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ 395
              D+N  Y   GF  +      G R+SAA AYL P A KR NL ++  +   +++  + 
Sbjct: 175 RTDDLNG-YQQEGFGPMDRTVTNGRRWSAARAYLDP-ALKRPNLTIVTHALTDRILF-EG 231

Query: 396 NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR 455
             A GVEY    G      A +EVIL+AGAI + QLL LSGIGP  HL E+ IPV  DL 
Sbjct: 232 KRAVGVEYER-GGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLP 290

Query: 456 -VGENL 460
            VGENL
Sbjct: 291 GVGENL 296

Length = 560

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score =  218 bits (557), Expect = 7e-61
 Identities = 116/345 (33%), Positives = 172/345 (49%), Gaps = 17/345 (4%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 221
           +D +IVG+ +AG VLA RLS+ + L VL++EAGG D     ++P   + L        Y 
Sbjct: 8   YDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFL---MNGPRYD 63

Query: 222 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDET 280
                     +R   +    GK LGGSS++  ++Y RG   D++ +A+  G  GW YD+ 
Sbjct: 64  WGFRTEPEPHLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDV 123

Query: 281 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 340
           L YF ++ED   V   + +  HG  G  P+ +   +  N I   F  + ++LG+P   D 
Sbjct: 124 LPYFKRAEDLLGVGGQDLRTWHGGGG--PLPVSPPRSPNPIARAFIEAGEQLGFPTTPDP 181

Query: 341 NDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATG 400
           N    + GF         G R+SAA AYL P   KR NL +L  ++V ++++ + + A G
Sbjct: 182 NGADQE-GFGPYCVTICNGRRWSAARAYLKPAL-KRPNLTLLTGARVRRILL-EGDRAVG 238

Query: 401 VEYVNSKGETVRVT-ANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGE 458
           VE     G T+    A +EV+L AGAI + +LLLLSGIGP  HL E  I V   L  VG+
Sbjct: 239 VEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQ 298

Query: 459 NLK----LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLS 499
           NL+    +   F        + L           +YL+ R GP +
Sbjct: 299 NLQDHLEIYVAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGA 343

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score =  217 bits (554), Expect = 1e-60
 Identities = 122/325 (37%), Positives = 163/325 (50%), Gaps = 28/325 (8%)

Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVL----SLSEFDH 218
           D II+G  +AG VLA RLSE  S  VL++EAGG D P    I  M + L        ++ 
Sbjct: 1   DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQ-MPAALAYPAGNKRYNW 59

Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGWGY 277
            Y  EP       + N R+    GK LGGSS++  ++YQRG   DYE +AK  G   W Y
Sbjct: 60  IYETEPEPH----MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDY 115

Query: 278 DETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
            + L Y+ + E      +   K   G  G  P+ + +   +N + + F  +  E GY   
Sbjct: 116 ADCLPYYKRLE----TTFGGEKPYRGHDG--PIKVRRGPADNPLFQAFIEAGVEAGYNKT 169

Query: 338 KDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV 397
            D+N  +   GF  +      G R SAA AYL P A KR NL V  R+ VTK+   + N 
Sbjct: 170 PDVNG-FRQEGFGPMDSTVHNGRRVSAARAYLHP-AMKRPNLEVQTRAFVTKINF-EGNR 226

Query: 398 ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-V 456
           ATGVE+    G      ANKEVIL+AGAI + QLL LSGIG   HL E+ I  +  L  V
Sbjct: 227 ATGVEFKKG-GRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGV 285

Query: 457 GENLKLNAQF------TGPVMAFSA 475
           GENL+ + +         PV  + +
Sbjct: 286 GENLQDHLEVYVQHACKQPVSLYPS 310

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score =  166 bits (421), Expect = 1e-43
 Identities = 96/307 (31%), Positives = 137/307 (44%), Gaps = 32/307 (10%)

Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG------GDTPIHSRIPGMSSVLSLSEFD 217
           D+++VG  +AGCV+A RLSE  S  V ++EAG         P          +   S   
Sbjct: 2   DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61

Query: 218 HAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGY 277
             Y     +      R +   I  G+ LGGS AV    + R    D++ +      GW +
Sbjct: 62  WRY---GVELTDGPRRAS--AIVRGRVLGGSGAVNGGYFCRALPADFDAWPI---PGWSW 113

Query: 278 DETLKYFVKSE---DYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGY 334
           D+ L +F   E   D+          +HGT G +PV   +  E + I   F  +A   G+
Sbjct: 114 DDVLPHFRAIETDLDF-------DGPLHGTAGPIPVR--RTAELDGISAAFVAAALGAGF 164

Query: 335 PCPKDMNDRYVDVGF--AELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVII 392
               D+N    D       +P     G R S A AYL P A KR NL V   ++V +++ 
Sbjct: 165 GWIADLNGSGPDAPTGVGAVPLNVDGGRRVSTAVAYLLP-ALKRPNLTVEADTRVVRILF 223

Query: 393 NDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQ 452
           +    A GVE +   G    + A++ V+L AGA+ +A LLLLSGIGP   L    I V  
Sbjct: 224 S-GTRAVGVEVL-GDGGPRTLRADR-VVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVL 280

Query: 453 DLRVGEN 459
           DL VG +
Sbjct: 281 DLPVGSD 287

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score =  128 bits (323), Expect = 3e-33
 Identities = 73/237 (30%), Positives = 106/237 (44%), Gaps = 41/237 (17%)

Query: 232 VRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDY 290
           V   R+ + AG  +GG S+V      R  +   + +A   G  GWGYD+ L Y  K E  
Sbjct: 14  VNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE-- 71

Query: 291 RSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP---CPKDMNDRYVDV 347
                       G  G    G+ ++  N  + +    +A+ELGYP    P++ N  +   
Sbjct: 72  ------------GPLGVTTKGIEESPLNQALLK----AAEELGYPVEAVPRNSNGCH-YC 114

Query: 348 GFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN-VATGVEYVNS 406
           GF  L      G + S A  +L P   +  NL +L  +K  K+II  +   A GVE  + 
Sbjct: 115 GFCGLG--CPTGAKQSTARTWLRPALER--NLRILTGAKAEKIIILGRGGRAVGVEARDG 170

Query: 407 KGETVR-VTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKL 462
            G   R +TA KEV++ AGA+    LLL SG+G   H             VG+NL+L
Sbjct: 171 GGGIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH------------PVGKNLQL 215

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase

 Score =  118 bits (299), Expect = 5e-31
 Identities = 49/130 (37%), Positives = 63/130 (48%), Gaps = 6/130 (4%)

Query: 640 PKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSL 699
           P+S G+VTL S+DPL  P ID   LS+P DLA L        R+     +  A   L   
Sbjct: 1   PRSRGRVTLSSSDPLGLPVIDPNYLSDPADLAALRAALRLARRI-----LAAALVELTPG 55

Query: 700 NLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRV 759
            +E        S      YIR    T+ +P+GT  MG   D   VV PDL+V G+  LRV
Sbjct: 56  PVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADPDD-GVVDPDLRVHGVDNLRV 114

Query: 760 ADISVLPNAI 769
            D SV P++ 
Sbjct: 115 VDASVFPSSP 124

This domain found associated with pfam00732. Length = 139

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score = 96.4 bits (240), Expect = 3e-20
 Identities = 95/339 (28%), Positives = 139/339 (41%), Gaps = 98/339 (28%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
           +D I+VG   AGC LA  LS+  +  VLL+E GG       +P  ++ +S  E  H  LA
Sbjct: 56  YDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGG-------VPFGNANVSFLENFHIGLA 106

Query: 223 E-----PSQF--AGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGW 275
           +      SQ   +  GV NAR ++     LGG + +    Y R ++     F +      
Sbjct: 107 DTSPTSASQAFISTDGVINARARV-----LGGGTCINAGFYSRAST----RFIQKA---- 153

Query: 276 GYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYP 335
           G+D  L     +E Y  V   E + VH                                P
Sbjct: 154 GWDAKLV----NESYPWV---ERQIVH---------------------------WPKVAP 179

Query: 336 CPKDMNDRYVDVGFAELPGMT---------------RYGLRFSAADAYLTPIAGKRTNLY 380
               + D  ++VG +   G T                +G R +AA+      AG    L 
Sbjct: 180 WQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELL---AAGNPNKLR 236

Query: 381 VLKRSKVTKVIINDQNV---ATGVEYVNSKGETVR--VTANK--EVILTAGAIANAQLLL 433
           VL  + V K++ +       ATGV + +  G   +  ++ NK  E+IL+AGAI + Q+LL
Sbjct: 237 VLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLL 296

Query: 434 LSGIGPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMA 472
           LSGIGPK  L + KIPV           L+ +  G  MA
Sbjct: 297 LSGIGPKKELKKHKIPV----------VLHNEHVGKGMA 325

Length = 587

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 92.5 bits (230), Expect = 4e-19
 Identities = 69/284 (24%), Positives = 95/284 (33%), Gaps = 54/284 (19%)

Query: 501 MHSYCYCLAHLDEVKIPVKQDLR-VGENLK----LNAQFTGPVMAFSAPLKRTVYSQEMV 555
           + S      HL E  I V   L  VG+NL+    +   F        + L          
Sbjct: 272 LLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEATEPTNDSVLSLFSKLGIGA 331

Query: 556 FKYLVNRIGPLS----NAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAY 611
            +YL+ R GP +      G                PD + H                   
Sbjct: 332 DRYLLTRDGPGATNHFEGGFVRSGP------AGEYPDGQYH------------------- 366

Query: 612 DFNDEVQTAYVNLNKRTDMGVISMSLVN--PKSCGKVTLKSADPLAPPCIDTGILSEPED 669
                     + +         ++ +    PKS G VTL+S DP   P ID   LS   D
Sbjct: 367 -----FAPLPLAIRAAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGD 421

Query: 670 LATLIRGTDYITRLEQTEAIRLAG-GTLMSLNLEACSQYPWRSTHSWTC-YIRHLTTTTS 727
            A    G              + G   L +      +  P  +T       IR L  T  
Sbjct: 422 RAIFRAGIRL--------TREIIGQPALDARRKAELAPGPRVTTDEDISAAIRFLARTAY 473

Query: 728 NPVGTVMMGNADDPNAVV-TPDLKVKGIKGLRVADISVLPNAII 770
           +P+GT  MG   DP AVV  P L+V G++ LRV D SV+P +  
Sbjct: 474 HPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTG 515

Length = 542

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 91.8 bits (229), Expect = 7e-19
 Identities = 82/291 (28%), Positives = 117/291 (40%), Gaps = 81/291 (27%)

Query: 509 AHLDEVKIPVKQDLR-VGENLK----LNAQF--TGPVMAFSAPLKRTVYSQEMV-FKYLV 560
            HL E+ IPV  DL  VGENL+    +  Q+    PV  + A LK   +++  +  ++L 
Sbjct: 276 EHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQPVSLYPA-LK--WWNKPKIGAEWLF 332

Query: 561 NRIGP-LSN---AGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDE 616
              G   SN   AG     G+I +      P+++ H L      IR        YD ++ 
Sbjct: 333 TGTGLGASNHFEAG-----GFIRSRAGVDWPNIQYHFLPVA---IR--------YDGSNA 376

Query: 617 VQ----TAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLAT 672
           V+     A+V   +               S G V LKSADP A P I    +S  +D   
Sbjct: 377 VKGHGFQAHVGPMR-------------SPSRGSVKLKSADPRAHPSILFNYMSTEQD--- 420

Query: 673 LIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTH------------SWTCYIR 720
                      E  +AIRL   T   +   A   Y  R               ++   +R
Sbjct: 421 ---------WREFRDAIRL---TREIMAQPALDPYRGREISPGADVQTDEEIDAF---VR 465

Query: 721 HLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIIT 771
               T  +P  T  MG   DP AVV P+ +V G++GLRV D S++P  I  
Sbjct: 466 EHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPT-ITN 513

Length = 560

>gnl|CDD|220569 pfam10101, DUF2339, Predicted membrane protein (DUF2339)

 Score = 78.5 bits (194), Expect = 1e-14
 Identities = 123/503 (24%), Positives = 148/503 (29%), Gaps = 1/503 (0%)

Query: 850  LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 909
            L L   +  FL   L L F    LFL+LF  + LL  +L          L   + L LL 
Sbjct: 164  LNLLGFVGTFLWGLLWLAFSTTELFLILFFLIFLLLAVLPALRWRLPARLRPYVDLTLL- 222

Query: 910  FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 969
            F   L+ F L  L +     L +  L L  L      LL     L L L    L  +   
Sbjct: 223  FGNPLVAFSLQALLVHDPYALAWSALGLAALYLALAFLLARRARLSLRLLAYSLLALALA 282

Query: 970  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1029
            F+ L + L L      L   L    L  +        L    L L L   L L  LLL  
Sbjct: 283  FVTLAIPLALSGRWTSLAWALEGAALLWLGVRQRRRLLRAFGLLLQLLALLSLLALLLLG 342

Query: 1030 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1089
             L    L  L L  L         L L        L   L     L  L      L   L
Sbjct: 343  YLNSAFLTGLLLWALAAAALAAAWLLLAERLSRRRLRQGLAALFALAALAALALALTMEL 402

Query: 1090 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1149
                +        L L  L        L + L +   L L  L  L  L          L
Sbjct: 403  SDAWLTLALAAQVLVLAALARRYVAPRLRWALKVLAALLLLRLTALPSLQAGTHPLAHWL 462

Query: 1150 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1209
            L    L L L L  L  L   L          L L LL L+L  +LL     L     L+
Sbjct: 463  LLAYGLALALLLAALRLLRRDLQLRAWLEAAALHLWLLLLVLTRYLLWGGDGLAGAYSLW 522

Query: 1210 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1269
               LL LL L L L           L++      LL    L  L+  L L   L   +  
Sbjct: 523  EAALLTLLALALALVYLYRRRARWPLVYRAAAYLLLGLAPLAALLALLLLENPLLSGIGG 582

Query: 1270 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1329
                 FL +   LL   L L   L    L           L   +L     L  L     
Sbjct: 583  AAPLGFLPILNPLLLAYLLLAPALLALWLRRLATPIRLKALRPAVLVAAAALGFLWLTLE 642

Query: 1330 LLLFLFLLLLFLLSSFSSSSSSS 1352
            +          L S      S S
Sbjct: 643  IRRLWHGWGGVLSSGTGEQYSYS 665

This domain, found in various hypothetical bacterial proteins, has no known function. Length = 738

>gnl|CDD|220569 pfam10101, DUF2339, Predicted membrane protein (DUF2339)

 Score = 77.8 bits (192), Expect = 2e-14
 Identities = 142/519 (27%), Positives = 181/519 (34%), Gaps = 9/519 (1%)

Query: 779  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 838
            LL F+   L  LL   F    L L+   L   LL  L  L   L   L   + L LLF  
Sbjct: 166  LLGFVGTFLWGLLWLAFSTTELFLILFFLIFLLLAVLPALRWRLPARLRPYVDLTLLFGN 225

Query: 839  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 898
              +   L   L+     L    L    L   +   FLL     L L LL +  L L L  
Sbjct: 226  PLVAFSLQALLVHDPYALAWSALGLAALYLAL--AFLLARRARLSLRLLAYSLLALALAF 283

Query: 899  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 958
            + L +PL  L   +  L + L    LL   +     L     L L LL L  LL L LL 
Sbjct: 284  VTLAIPL-ALSGRWTSLAWALEGAALLWLGVRQRRRLLRAFGLLLQLLALLSLLALLLLG 342

Query: 959  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LLFLL 1015
            +L   FL   L   L    L    LL    L    L   +  LF L  L  L   L   L
Sbjct: 343  YLNSAFLTGLLLWALAAAALAAAWLLLAERLSRRRLRQGLAALFALAALAALALALTMEL 402

Query: 1016 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1075
               +L L L    L+L      ++   L + L  L  LL L L  L         L   L
Sbjct: 403  SDAWLTLALAAQVLVLAALARRYVAPRLRWALKVLAALLLLRLTALPSLQAGTHPLAHWL 462

Query: 1076 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1135
            L        LL   L  L   L L  +L    L L L L +L   LL             
Sbjct: 463  LLAYGLALALLLAALRLLRRDLQLRAWLEAAALHLWLLLLVLTRYLLWGGDGLAGAYSLW 522

Query: 1136 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1195
               LL LL     L++L       PL      +LLL    L   L L LL   L+  +  
Sbjct: 523  EAALLTLLALALALVYLYRRRARWPLVYRAAAYLLLGLAPLAALLALLLLENPLLSGIGG 582

Query: 1196 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1255
               L  L +   L   LL +LLL   +L L+L      + L  L    L+    L FL L
Sbjct: 583  AAPLGFLPILNPL---LLAYLLLAPALLALWLRRLATPIRLKALRPAVLVAAAALGFLWL 639

Query: 1256 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1294
             L +          L           +L+L+L + L++ 
Sbjct: 640  TLEIRRLWHGWGGVLSSGTGEQYSYSVLWLLLGVALMIL 678

This domain, found in various hypothetical bacterial proteins, has no known function. Length = 738

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score = 76.4 bits (188), Expect = 4e-14
 Identities = 45/141 (31%), Positives = 60/141 (42%), Gaps = 18/141 (12%)

Query: 628 TDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTE 687
            D   + ++L+ P S G++ L SADP  PP I+    S   D A L  G      L    
Sbjct: 340 RDDPHLGVALMRPHSRGRIRLASADPADPPRIEHRYDSSAADRAALRAGAALAHEL---- 395

Query: 688 AIRLAGGTLMSLNLEACSQYP--WRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVV 745
              L    L  L   A  +    W      T   +HL        G+  MG  DDP AVV
Sbjct: 396 ---LGSPELGPLLEPAVREGEASWVLARLATS--QHLC-------GSCRMGGRDDPGAVV 443

Query: 746 TPDLKVKGIKGLRVADISVLP 766
               +V+G++GL V D S+LP
Sbjct: 444 DARCRVRGVEGLWVVDGSILP 464

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|220569 pfam10101, DUF2339, Predicted membrane protein (DUF2339)

 Score = 76.2 bits (188), Expect = 8e-14
 Identities = 118/457 (25%), Positives = 145/457 (31%), Gaps = 11/457 (2%)

Query: 778  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 837
            F    LFL+L FL+  L  +L  L   L   L   + L LL    L+   L   L+    
Sbjct: 182  FSTTELFLILFFLIFLLLAVLPALRWRLPARLRPYVDLTLLFGNPLVAFSLQALLVHDPY 241

Query: 838  ILPLFLLLF--LFLLLLFLLLFLFLLLFLLLLFLILPL---FLLLFLFLLLLFLLLFLFL 892
             L    L    L+L L FLL     L   LL + +L L   F+ L + L L      L  
Sbjct: 242  ALAWSALGLAALYLALAFLLARRARLSLRLLAYSLLALALAFVTLAIPLALSGRWTSLAW 301

Query: 893  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 952
             L    L  +        L    L L L   L L  LLL   L    L  L L  L    
Sbjct: 302  ALEGAALLWLGVRQRRRLLRAFGLLLQLLALLSLLALLLLGYLNSAFLTGLLLWALAAAA 361

Query: 953  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1012
                 L L        L   L     L  L      L   L    +        L L  L
Sbjct: 362  LAAAWLLLAERLSRRRLRQGLAALFALAALAALALALTMELSDAWLTLALAAQVLVLAAL 421

Query: 1013 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL- 1071
                    L + L +   L L  L  L  L          LL    L L L L  L  L 
Sbjct: 422  ARRYVAPRLRWALKVLAALLLLRLTALPSLQAGTHPLAHWLLLAYGLALALLLAALRLLR 481

Query: 1072 -----FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1126
                    L    L L+LLL +L  +L+     L   + L    LL L  L   L+    
Sbjct: 482  RDLQLRAWLEAAALHLWLLLLVLTRYLLWGGDGLAGAYSLWEAALLTLLALALALVYLYR 541

Query: 1127 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1186
                  L        LL    L   L LL L  PL   +     L FL +   LLL  LL
Sbjct: 542  RRARWPLVYRAAAYLLLGLAPLAALLALLLLENPLLSGIGGAAPLGFLPILNPLLLAYLL 601

Query: 1187 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1223
            L   L    L  L   +    L   +L+    L  + 
Sbjct: 602  LAPALLALWLRRLATPIRLKALRPAVLVAAAALGFLW 638

This domain, found in various hypothetical bacterial proteins, has no known function. Length = 738

>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]

 Score = 72.9 bits (179), Expect = 6e-13
 Identities = 138/458 (30%), Positives = 164/458 (35%), Gaps = 10/458 (2%)

Query: 807  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 866
                 LL   LLL+ L L L  L    L       +  +   +L         LL     
Sbjct: 3    ALRSRLLLWLLLLIALALLLPGLGSRPLWDPDEARYAEIAREMLESGDWFTPQLLGLPYF 62

Query: 867  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 926
                L  +L    +LL         L   L      L ++ L       L  LL   +LL
Sbjct: 63   EKPPLVYWLQALSYLLFGVNEWSARLPSALAGALTALLVYWLAKRLFGRLAALLAALILL 122

Query: 927  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL--L 984
               L FLI  L LL      L F L     LL+L L       +LLL    L L  L   
Sbjct: 123  LTPLFFLIGRLALLDA---ALAFFLTLALALLYLALRARGKLKWLLLLGLALGLGFLTKG 179

Query: 985  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1044
               LLL L+LL L+L   L   L  L L+L L L LL  L  L  I   F   F  L L 
Sbjct: 180  PGALLLPLILLLLLLAPRLRRLLRDLRLWLGLLLGLLPVLPWLLAIQAQFAPYFGHLFLT 239

Query: 1045 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1104
            F     F  +              L+L+LL+L L +  +LLL    L L       L + 
Sbjct: 240  FGWEEDFQRVA----SGDEHHSGPLWLYLLVLLLGVIPWLLLLPGALRLRWAKRGKLAVA 295

Query: 1105 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1164
            LL L L L L LL F L    + P  L  +  L  L  L +L L   LLL  L     L 
Sbjct: 296  LLFLLLWLLLPLLFFSLAAGKLPPYILPAYPALAALAGLGWLLLAALLLLYSLRRLGLLA 355

Query: 1165 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL-FLLLFLLLLFLIL 1223
            L L L     L  LFLL    L    L L   +   L  L L L     LL   LL    
Sbjct: 356  LILGLTAAVALALLFLLGPANLPPKGLILLFAVLAVLAALALWLVAARRLLRNKLLVWAG 415

Query: 1224 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1261
             L L L   LL    LL   L    L L   LP  + L
Sbjct: 416  ALLLPLLWALLGGLYLLNRALPETGLPLAQKLPKGVSL 453

Length = 535

>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]

 Score = 72.9 bits (179), Expect = 6e-13
 Identities = 134/456 (29%), Positives = 160/456 (35%), Gaps = 6/456 (1%)

Query: 871  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 930
                 LL   LLL+ L L L  L    L       +  +   +L         LL     
Sbjct: 3    ALRSRLLLWLLLLIALALLLPGLGSRPLWDPDEARYAEIAREMLESGDWFTPQLLGLPYF 62

Query: 931  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 990
                L  +L    +LL         L   L      L ++ L       L  LL   +LL
Sbjct: 63   EKPPLVYWLQALSYLLFGVNEWSARLPSALAGALTALLVYWLAKRLFGRLAALLAALILL 122

Query: 991  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1050
               L FLI  L LL       L L L L  L       L   L L L L L  L      
Sbjct: 123  LTPLFFLIGRLALLDAALAFFLTLALALLYLALRARGKLKWLLLLGLALGLGFLTKGPGA 182

Query: 1051 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1110
             LL  +LLL L+ P      L  LL  L L+L LLL LL +   L      F        
Sbjct: 183  LLLPLILLLLLLAP-----RLRRLLRDLRLWLGLLLGLLPVLPWLLAIQAQFAPYFGHLF 237

Query: 1111 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1170
            L F +   F  +          L+L+LL+L L +  +LLL    L L       L + LL
Sbjct: 238  LTFGWEEDFQRVASGDEHHSGPLWLYLLVLLLGVIPWLLLLPGALRLRWAKRGKLAVALL 297

Query: 1171 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1230
             L L L L LL F L    + P  L  +  L  L  L +L L   LLL  L     L L 
Sbjct: 298  FLLLWLLLPLLFFSLAAGKLPPYILPAYPALAALAGLGWLLLAALLLLYSLRRLGLLALI 357

Query: 1231 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL-FLLLFLLLLFLILPL 1289
            L L     L  LFLL    L    L L   +   L  L L L     LL   LL     L
Sbjct: 358  LGLTAAVALALLFLLGPANLPPKGLILLFAVLAVLAALALWLVAARRLLRNKLLVWAGAL 417

Query: 1290 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1325
             L L   LL    LL   L    L L   LP  + L
Sbjct: 418  LLPLLWALLGGLYLLNRALPETGLPLAQKLPKGVSL 453

Length = 535

>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]

 Score = 70.2 bits (172), Expect = 4e-12
 Identities = 118/361 (32%), Positives = 138/361 (38%), Gaps = 3/361 (0%)

Query: 776  ISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 835
               L   L   L   L      L   L+ L+ PLF L+    LL   L F   L   LL 
Sbjct: 93   AGALTALLVYWLAKRLFGRLAALLAALILLLTPLFFLIGRLALLDAALAFFLTLALALLY 152

Query: 836  FLILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLFLILPLFLLL-FLFLLLLFLLLFLFLL 893
              +     L +L LL L L L FL      LLL LIL L LL   L  LL  L L+L LL
Sbjct: 153  LALRARGKLKWLLLLGLALGLGFLTKGPGALLLPLILLLLLLAPRLRRLLRDLRLWLGLL 212

Query: 894  LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 953
            L LL +   L      F        L F +   F  +          L+L+LL+L L + 
Sbjct: 213  LGLLPVLPWLLAIQAQFAPYFGHLFLTFGWEEDFQRVASGDEHHSGPLWLYLLVLLLGVI 272

Query: 954  LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1013
             +LLL    L L       L + LL L L L L LL F L    + P  L  +  L  L 
Sbjct: 273  PWLLLLPGALRLRWAKRGKLAVALLFLLLWLLLPLLFFSLAAGKLPPYILPAYPALAALA 332

Query: 1014 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1073
             L +L L   LLL  L     L L L L     L  LFLL    L    L L   +   L
Sbjct: 333  GLGWLLLAALLLLYSLRRLGLLALILGLTAAVALALLFLLGPANLPPKGLILLFAVLAVL 392

Query: 1074 LLLFLLLFL-FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1132
              L L L     LL   LL     L L L   LL    LL   L    L L   LP  + 
Sbjct: 393  AALALWLVAARRLLRNKLLVWAGALLLPLLWALLGGLYLLNRALPETGLPLAQKLPKGVS 452

Query: 1133 L 1133
            L
Sbjct: 453  L 453

Length = 535

>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]

 Score = 69.8 bits (171), Expect = 5e-12
 Identities = 139/459 (30%), Positives = 165/459 (35%), Gaps = 11/459 (2%)

Query: 775  AISFLLLFLFLLLLF-LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 833
                  L L+LLLL  L L L  L    L       +  +   +L         LL    
Sbjct: 2    KALRSRLLLWLLLLIALALLLPGLGSRPLWDPDEARYAEIAREMLESGDWFTPQLLGLPY 61

Query: 834  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 893
                 L  +L    +LL         L   L      L ++ L       L  LL   +L
Sbjct: 62   FEKPPLVYWLQALSYLLFGVNEWSARLPSALAGALTALLVYWLAKRLFGRLAALLAALIL 121

Query: 894  LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL-- 951
            L   L FLI  L LL      L F L     LL+L L       +LLL    L L  L  
Sbjct: 122  LLTPLFFLIGRLALLDA---ALAFFLTLALALLYLALRARGKLKWLLLLGLALGLGFLTK 178

Query: 952  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1011
                LLL L+LL L+L   L   L  L L+L L L LL  L  L  I   F   F  L L
Sbjct: 179  GPGALLLPLILLLLLLAPRLRRLLRDLRLWLGLLLGLLPVLPWLLAIQAQFAPYFGHLFL 238

Query: 1012 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1071
             F     F  +              L+L+LL+L L +  +LLL    L L       L +
Sbjct: 239  TFGWEEDFQRVA----SGDEHHSGPLWLYLLVLLLGVIPWLLLLPGALRLRWAKRGKLAV 294

Query: 1072 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1131
             LL L L L L LL F L    + P  L  +  L  L  L +L L   LLL  L     L
Sbjct: 295  ALLFLLLWLLLPLLFFSLAAGKLPPYILPAYPALAALAGLGWLLLAALLLLYSLRRLGLL 354

Query: 1132 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL-FLLLFLLLLFLI 1190
             L L L     L  LFLL    L    L L   +   L  L L L     LL   LL   
Sbjct: 355  ALILGLTAAVALALLFLLGPANLPPKGLILLFAVLAVLAALALWLVAARRLLRNKLLVWA 414

Query: 1191 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1229
              L L L   LL    LL   L    L L   LP  + L
Sbjct: 415  GALLLPLLWALLGGLYLLNRALPETGLPLAQKLPKGVSL 453

Length = 535

>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]

 Score = 69.0 bits (169), Expect = 1e-11
 Identities = 117/402 (29%), Positives = 143/402 (35%), Gaps = 5/402 (1%)

Query: 935  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 994
                 LL   LLL+ L L L  L    L       +  +   +L         LL     
Sbjct: 3    ALRSRLLLWLLLLIALALLLPGLGSRPLWDPDEARYAEIAREMLESGDWFTPQLLGLPYF 62

Query: 995  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1054
                L  +L    +LL         L   L      L ++ L       L  LL   +LL
Sbjct: 63   EKPPLVYWLQALSYLLFGVNEWSARLPSALAGALTALLVYWLAKRLFGRLAALLAALILL 122

Query: 1055 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1114
               L FLI  L LL       L L L L  L       L   L L L L L  L      
Sbjct: 123  LTPLFFLIGRLALLDAALAFFLTLALALLYLALRARGKLKWLLLLGLALGLGFLTKGPGA 182

Query: 1115 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1174
             LL  +LLL L+ P      L  LL  L L+L LLL LL +   L      F        
Sbjct: 183  LLLPLILLLLLLAP-----RLRRLLRDLRLWLGLLLGLLPVLPWLLAIQAQFAPYFGHLF 237

Query: 1175 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1234
            L F +   F  +          L+L+LL+L L +  +LLL    L L       L + LL
Sbjct: 238  LTFGWEEDFQRVASGDEHHSGPLWLYLLVLLLGVIPWLLLLPGALRLRWAKRGKLAVALL 297

Query: 1235 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1294
             L L L L LL F L    + P  L  +  L  L  L +L L   LLL  L     L L 
Sbjct: 298  FLLLWLLLPLLFFSLAAGKLPPYILPAYPALAALAGLGWLLLAALLLLYSLRRLGLLALI 357

Query: 1295 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFL 1336
            L L     L  LFLL    L    L L   +   L  L L+L
Sbjct: 358  LGLTAAVALALLFLLGPANLPPKGLILLFAVLAVLAALALWL 399

Length = 535

>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]

 Score = 68.7 bits (168), Expect = 1e-11
 Identities = 111/354 (31%), Positives = 131/354 (37%), Gaps = 8/354 (2%)

Query: 998  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFL 1056
            +          LL+ +L   LF  L  LL  LIL L  L FL   L  L     F L   
Sbjct: 88   LPSALAGALTALLVYWLAKRLFGRLAALLAALILLLTPLFFLIGRLALLDAALAFFLTLA 147

Query: 1057 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1116
            L L  +         +LLLL L L L   L      L+LPL LLL L    L  LL    
Sbjct: 148  LALLYLALRARGKLKWLLLLGLALGL-GFLTKGPGALLLPLILLLLLLAPRLRRLLRDLR 206

Query: 1117 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL-----PLFLLLFLFLLL 1171
            L   LLL L+  L  LL +          LFL       F  +          L+L+LL+
Sbjct: 207  LWLGLLLGLLPVLPWLLAIQAQFAPYFGHLFLTFGWEEDFQRVASGDEHHSGPLWLYLLV 266

Query: 1172 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1231
            L L +  +LLL    L L       L + LL L L L L LL F L    + P  L  + 
Sbjct: 267  LLLGVIPWLLLLPGALRLRWAKRGKLAVALLFLLLWLLLPLLFFSLAAGKLPPYILPAYP 326

Query: 1232 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1291
             L  L  L +L L   LLL  L     L L L L     L  LFLL    L    L L  
Sbjct: 327  ALAALAGLGWLLLAALLLLYSLRRLGLLALILGLTAAVALALLFLLGPANLPPKGLILLF 386

Query: 1292 LLFLFLLLLFLLLFL-FLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSS 1344
             +   L  L L L     LL   LL     L L L   LL     L      + 
Sbjct: 387  AVLAVLAALALWLVAARRLLRNKLLVWAGALLLPLLWALLGGLYLLNRALPETG 440

Length = 535

>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO

 Score = 69.2 bits (170), Expect = 1e-11
 Identities = 110/394 (27%), Positives = 165/394 (41%), Gaps = 27/394 (6%)

Query: 1000 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1059
            P  LL+FLF         L ++L  + L  +   + L   F  +      LF   + L  
Sbjct: 75   PFNLLVFLFPASQLPDAILLIILLKIGLAGLSFAYYLRKRFKKISKWSALLFSTAYALSG 134

Query: 1060 FLILPLFLLLFLFLLLLFLLLFLFLLLFLL---LLFLILPLFLLL-----FLFLLLLFLL 1111
            F+I   F L++L  L+L  L+ L L   +        I+ L LLL     F +++ +FL+
Sbjct: 135  FVIYNRFNLMWLDALILLPLIILGLERLIREKKPGLYIIALALLLISNFYFGYMICIFLV 194

Query: 1112 L-FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1170
            L FL+ L+F  +          +   LL   +   + L   L LL        +  L   
Sbjct: 195  LYFLYRLIFKDIKSRWKQFLRFIISSLLSGGISAVVLLPTVLGLLNNKRAYTEVSILLTF 254

Query: 1171 LLFLLLFLFLLLFLLLLFL----ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1226
             +  L  L  LL     F     +  +++ L   LLL+       + L   LLF +L LF
Sbjct: 255  DINPLDLLAKLLIGSFNFTQMGGLPNIYVGLLPLLLLILYFFNKLIKLKEKLLFALLLLF 314

Query: 1227 LLLFLFLLLLFLLL------------FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1274
            L+L  +L  L L+             F FL  FL+LL L     L L     L  L+  L
Sbjct: 315  LILSFYLPPLDLVWHGFQAPVWFPYRFSFLFSFLILL-LAAEALLHLKQLKKLKILISIL 373

Query: 1275 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1334
             L+L  +L+FL+       FL    L L L LFLLL+LLLL L L   +   L ++LL L
Sbjct: 374  LLVLLFILVFLLNLSKHYSFLTQTNLLLTL-LFLLLYLLLLLLFLKKQIRKKLVIILLLL 432

Query: 1335 FLLLLFLLSSFSSSSSSSFSYSSSSSSSSFSPLS 1368
             ++L   L+++ S +  S  +  SS S       
Sbjct: 433  VVVLELGLNAYLSLNGISKEWQYSSRSLYAEYYK 466

This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family. Length = 835

>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]

 Score = 67.5 bits (165), Expect = 4e-11
 Identities = 94/345 (27%), Positives = 130/345 (37%), Gaps = 17/345 (4%)

Query: 840  PLFLLLFLFLLLLFLLLFLFLLLFLLLLF-LILPLFLLLFLFLLLLFLLLFLFLLLFLLL 898
            PLFL L   L L+   +F   L    LLF  IL +  ++ ++LL   +L     LL  LL
Sbjct: 89   PLFLYLTAALGLILGSIFPVSLETAALLFPAILGVLTVIPVYLLGRRILGDKTGLLAALL 148

Query: 899  LFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 956
            L L        +   +   +F LL     LF  LL L     L   +   LL  L    L
Sbjct: 149  LALAPGYLSRTVAGFYDTDMFELLLPLFALFFFLLALKAAKKLKKPVIYALLAGLALGLL 208

Query: 957  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1016
             L     + IL + LL  L LL+L               FL      +L    L+   LL
Sbjct: 209  ALAWGGYYYILAILLLYALVLLVL--------------AFLRGKKTDILGFVGLVTLTLL 254

Query: 1017 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1076
             L +L  LL           + L  ++L +L  LF L+    L       + L L L L+
Sbjct: 255  SLLILPPLLGFSGYYYSGFSVLLGFIVLAVLGLLFSLVKNFELRKFFAYLVPLTLSLALI 314

Query: 1077 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1136
               L LFL L    +  I     +  L + L F  +     +FL L      LF     F
Sbjct: 315  LGGLLLFLELLRAYILPISGRLYVGGLQVYLPFGTIAEAAPIFLPLGITNAALFGAAGFF 374

Query: 1137 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1181
             LLL +LL  + L+       +  L  L+  F   L  + F F L
Sbjct: 375  ALLLGILLLAYFLVRRPKKEGLFLLVWLVLSFYAALTQVRFAFYL 419

Length = 773

>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]

 Score = 67.5 bits (165), Expect = 4e-11
 Identities = 94/345 (27%), Positives = 130/345 (37%), Gaps = 17/345 (4%)

Query: 904  PLFLLLFLFLLLLFLLLFLFLLLFLLLLF-LILPLFLLLFLFLLLLFLLLFLFLLLFLLL 962
            PLFL L   L L+   +F   L    LLF  IL +  ++ ++LL   +L     LL  LL
Sbjct: 89   PLFLYLTAALGLILGSIFPVSLETAALLFPAILGVLTVIPVYLLGRRILGDKTGLLAALL 148

Query: 963  LFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1020
            L L        +   +   +F LL     LF  LL L     L   +   LL  L    L
Sbjct: 149  LALAPGYLSRTVAGFYDTDMFELLLPLFALFFFLLALKAAKKLKKPVIYALLAGLALGLL 208

Query: 1021 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1080
             L     + IL + LL  L LL+L               FL      +L    L+   LL
Sbjct: 209  ALAWGGYYYILAILLLYALVLLVL--------------AFLRGKKTDILGFVGLVTLTLL 254

Query: 1081 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1140
             L +L  LL           + L  ++L +L  LF L+    L       + L L L L+
Sbjct: 255  SLLILPPLLGFSGYYYSGFSVLLGFIVLAVLGLLFSLVKNFELRKFFAYLVPLTLSLALI 314

Query: 1141 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1200
               L LFL L    +  I     +  L + L F  +     +FL L      LF     F
Sbjct: 315  LGGLLLFLELLRAYILPISGRLYVGGLQVYLPFGTIAEAAPIFLPLGITNAALFGAAGFF 374

Query: 1201 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1245
             LLL +LL  + L+       +  L  L+  F   L  + F F L
Sbjct: 375  ALLLGILLLAYFLVRRPKKEGLFLLVWLVLSFYAALTQVRFAFYL 419

Length = 773

>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]

 Score = 67.5 bits (165), Expect = 4e-11
 Identities = 94/345 (27%), Positives = 130/345 (37%), Gaps = 17/345 (4%)

Query: 968  PLFLLLFLFLLLLFLLLFLFLLLFLLLLF-LILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1026
            PLFL L   L L+   +F   L    LLF  IL +  ++ ++LL   +L     LL  LL
Sbjct: 89   PLFLYLTAALGLILGSIFPVSLETAALLFPAILGVLTVIPVYLLGRRILGDKTGLLAALL 148

Query: 1027 LFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1084
            L L        +   +   +F LL     LF  LL L     L   +   LL  L    L
Sbjct: 149  LALAPGYLSRTVAGFYDTDMFELLLPLFALFFFLLALKAAKKLKKPVIYALLAGLALGLL 208

Query: 1085 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1144
             L     + IL + LL  L LL+L               FL      +L    L+   LL
Sbjct: 209  ALAWGGYYYILAILLLYALVLLVL--------------AFLRGKKTDILGFVGLVTLTLL 254

Query: 1145 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1204
             L +L  LL           + L  ++L +L  LF L+    L       + L L L L+
Sbjct: 255  SLLILPPLLGFSGYYYSGFSVLLGFIVLAVLGLLFSLVKNFELRKFFAYLVPLTLSLALI 314

Query: 1205 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1264
               L LFL L    +  I     +  L + L F  +     +FL L      LF     F
Sbjct: 315  LGGLLLFLELLRAYILPISGRLYVGGLQVYLPFGTIAEAAPIFLPLGITNAALFGAAGFF 374

Query: 1265 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1309
             LLL +LL  + L+       +  L  L+  F   L  + F F L
Sbjct: 375  ALLLGILLLAYFLVRRPKKEGLFLLVWLVLSFYAALTQVRFAFYL 419

Length = 773

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 67.1 bits (164), Expect = 5e-11
 Identities = 56/184 (30%), Positives = 81/184 (44%), Gaps = 1/184 (0%)

Query: 779 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 838
           L   L LL LF  +FL   + L+ L  +L L +    F+L + LL     LLF L +  I
Sbjct: 4   LNKTLALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFI 63

Query: 839 LPLFLLLFLFL-LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 897
           + L LLL LF  +    +  L L L + +L ++  LF   F+  L +   L +       
Sbjct: 64  VSLLLLLLLFKGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFNLGK 123

Query: 898 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 957
           L F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L  LL     L
Sbjct: 124 LGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLLYLFLQL 183

Query: 958 LFLL 961
           LFL 
Sbjct: 184 LFLG 187

Length = 650

>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]

 Score = 66.3 bits (162), Expect = 9e-11
 Identities = 94/346 (27%), Positives = 128/346 (36%), Gaps = 20/346 (5%)

Query: 1000 PLFLLLFLFLLLLFLLLFLFLLLFLLLLF-LILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1058
            PLFL L   L L+   +F   L    LLF  IL +  ++ ++LL   +L     LL  LL
Sbjct: 89   PLFLYLTAALGLILGSIFPVSLETAALLFPAILGVLTVIPVYLLGRRILGDKTGLLAALL 148

Query: 1059 LFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1116
            L L        +   +   +F LL     LF  LL L     L   +   LL  L    L
Sbjct: 149  LALAPGYLSRTVAGFYDTDMFELLLPLFALFFFLLALKAAKKLKKPVIYALLAGLALGLL 208

Query: 1117 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1176
             L     + IL + LL  L LL+L               FL      +L    L+   LL
Sbjct: 209  ALAWGGYYYILAILLLYALVLLVL--------------AFLRGKKTDILGFVGLVTLTLL 254

Query: 1177 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1236
             L +L  LL           + L  ++L +L  LF L+    L       + L L L L+
Sbjct: 255  SLLILPPLLGFSGYYYSGFSVLLGFIVLAVLGLLFSLVKNFELRKFFAYLVPLTLSLALI 314

Query: 1237 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1296
               L LFL L    +  I     +  L + L F  +     +FL L      LF     F
Sbjct: 315  LGGLLLFLELLRAYILPISGRLYVGGLQVYLPFGTIAEAAPIFLPLGITNAALFGAAGFF 374

Query: 1297 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLL 1342
                 LL  L L  FL+       LFLL++L L        + F  
Sbjct: 375  A---LLLGILLLAYFLVRRPKKEGLFLLVWLVLSFYAALTQVRFAF 417

Length = 773

>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]

 Score = 66.3 bits (162), Expect = 1e-10
 Identities = 91/331 (27%), Positives = 126/331 (38%), Gaps = 21/331 (6%)

Query: 808  PLFLLLFLFLLLLFLLLFLFLLLFLLLLF-LILPLFLLLFLFLLLLFLLLFLFLLLFLLL 866
            PLFL L   L L+   +F   L    LLF  IL +  ++ ++LL   +L     LL  LL
Sbjct: 89   PLFLYLTAALGLILGSIFPVSLETAALLFPAILGVLTVIPVYLLGRRILGDKTGLLAALL 148

Query: 867  LFLILPLFLLLFL--------FLLLLFLLLFLFLLLFLLLLFLILPLF------LLLFLF 912
            L L                   LLL    LF FLL       L  P+       L L L 
Sbjct: 149  LALAPGYLSRTVAGFYDTDMFELLLPLFALFFFLLALKAAKKLKKPVIYALLAGLALGLL 208

Query: 913  LL------LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 966
             L       +  +L L+ L+ L+L FL      +L    L+   LL L +L  LL     
Sbjct: 209  ALAWGGYYYILAILLLYALVLLVLAFLRGKKTDILGFVGLVTLTLLSLLILPPLLGFSGY 268

Query: 967  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1026
                  + L  ++L +L  LF L+    L       + L L L L+   L LFL L    
Sbjct: 269  YYSGFSVLLGFIVLAVLGLLFSLVKNFELRKFFAYLVPLTLSLALILGGLLLFLELLRAY 328

Query: 1027 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1086
            +  I     +  L + L F  +     +FL L      LF     F LLL +LL  + L+
Sbjct: 329  ILPISGRLYVGGLQVYLPFGTIAEAAPIFLPLGITNAALFGAAGFFALLLGILLLAYFLV 388

Query: 1087 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1117
                   +  L  L+  F   L  + F F L
Sbjct: 389  RRPKKEGLFLLVWLVLSFYAALTQVRFAFYL 419

Length = 773

>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO

 Score = 65.3 bits (160), Expect = 2e-10
 Identities = 104/371 (28%), Positives = 151/371 (40%), Gaps = 32/371 (8%)

Query: 799  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL---FLFLLLLFLL 855
             L+ LF    L   + L +LL   L  L    +L   F  +  +  L     + L  F++
Sbjct: 78   LLVFLFPASQLPDAILLIILLKIGLAGLSFAYYLRKRFKKISKWSALLFSTAYALSGFVI 137

Query: 856  LFLFLLLFLLLLFLILPLFLL-----------LFLFLLLLFLLLFLFLLLFLLLLFLILP 904
               F L++L  L L LPL +L               + L  LL+  F   +++ +FL+L 
Sbjct: 138  YNRFNLMWLDALIL-LPLIILGLERLIREKKPGLYIIALALLLISNFYFGYMICIFLVLY 196

Query: 905  LFLLLFL-----FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLF 955
                L               +   LL   +   ++LP  L L            LL F  
Sbjct: 197  FLYRLIFKDIKSRWKQFLRFIISSLLSGGISAVVLLPTVLGLLNNKRAYTEVSILLTFDI 256

Query: 956  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1015
              L LL   LI          L  +++ L   LLL L     ++ L   L   LLLLFL+
Sbjct: 257  NPLDLLAKLLIGSFNFTQMGGLPNIYVGLLPLLLLILYFFNKLIKLKEKLLFALLLLFLI 316

Query: 1016 LFLFLLLFLLLLF-------LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1068
            L  F L  L L++            F  LF FL+LL     L  L  L  L +++ + LL
Sbjct: 317  LS-FYLPPLDLVWHGFQAPVWFPYRFSFLFSFLILLLAAEALLHLKQLKKLKILISILLL 375

Query: 1069 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1128
            + LF+L+  L L            L+  LFLLL+L LLLLFL   +   L ++LL L++ 
Sbjct: 376  VLLFILVFLLNLSKHYSFLTQTNLLLTLLFLLLYLLLLLLFLKKQIRKKLVIILLLLVVV 435

Query: 1129 LFLLLFLFLLL 1139
            L L L  +L L
Sbjct: 436  LELGLNAYLSL 446

This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family. Length = 835

>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO

 Score = 65.3 bits (160), Expect = 2e-10
 Identities = 104/371 (28%), Positives = 151/371 (40%), Gaps = 32/371 (8%)

Query: 831  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL---FLFLLLLFLL 887
             L+ LF    L   + L +LL   L  L    +L   F  +  +  L     + L  F++
Sbjct: 78   LLVFLFPASQLPDAILLIILLKIGLAGLSFAYYLRKRFKKISKWSALLFSTAYALSGFVI 137

Query: 888  LFLFLLLFLLLLFLILPLFLL-----------LFLFLLLLFLLLFLFLLLFLLLLFLILP 936
               F L++L  L L LPL +L               + L  LL+  F   +++ +FL+L 
Sbjct: 138  YNRFNLMWLDALIL-LPLIILGLERLIREKKPGLYIIALALLLISNFYFGYMICIFLVLY 196

Query: 937  LFLLLFL-----FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLF 987
                L               +   LL   +   ++LP  L L            LL F  
Sbjct: 197  FLYRLIFKDIKSRWKQFLRFIISSLLSGGISAVVLLPTVLGLLNNKRAYTEVSILLTFDI 256

Query: 988  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1047
              L LL   LI          L  +++ L   LLL L     ++ L   L   LLLLFL+
Sbjct: 257  NPLDLLAKLLIGSFNFTQMGGLPNIYVGLLPLLLLILYFFNKLIKLKEKLLFALLLLFLI 316

Query: 1048 LFLFLLLFLLLLF-------LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1100
            L  F L  L L++            F  LF FL+LL     L  L  L  L +++ + LL
Sbjct: 317  LS-FYLPPLDLVWHGFQAPVWFPYRFSFLFSFLILLLAAEALLHLKQLKKLKILISILLL 375

Query: 1101 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1160
            + LF+L+  L L            L+  LFLLL+L LLLLFL   +   L ++LL L++ 
Sbjct: 376  VLLFILVFLLNLSKHYSFLTQTNLLLTLLFLLLYLLLLLLFLKKQIRKKLVIILLLLVVV 435

Query: 1161 LFLLLFLFLLL 1171
            L L L  +L L
Sbjct: 436  LELGLNAYLSL 446

This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family. Length = 835

>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO

 Score = 65.3 bits (160), Expect = 2e-10
 Identities = 104/371 (28%), Positives = 151/371 (40%), Gaps = 32/371 (8%)

Query: 863  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL---FLFLLLLFLL 919
             L+ LF    L   + L +LL   L  L    +L   F  +  +  L     + L  F++
Sbjct: 78   LLVFLFPASQLPDAILLIILLKIGLAGLSFAYYLRKRFKKISKWSALLFSTAYALSGFVI 137

Query: 920  LFLFLLLFLLLLFLILPLFLL-----------LFLFLLLLFLLLFLFLLLFLLLLFLILP 968
               F L++L  L L LPL +L               + L  LL+  F   +++ +FL+L 
Sbjct: 138  YNRFNLMWLDALIL-LPLIILGLERLIREKKPGLYIIALALLLISNFYFGYMICIFLVLY 196

Query: 969  LFLLLFL-----FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLF 1019
                L               +   LL   +   ++LP  L L            LL F  
Sbjct: 197  FLYRLIFKDIKSRWKQFLRFIISSLLSGGISAVVLLPTVLGLLNNKRAYTEVSILLTFDI 256

Query: 1020 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1079
              L LL   LI          L  +++ L   LLL L     ++ L   L   LLLLFL+
Sbjct: 257  NPLDLLAKLLIGSFNFTQMGGLPNIYVGLLPLLLLILYFFNKLIKLKEKLLFALLLLFLI 316

Query: 1080 LFLFLLLFLLLLF-------LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1132
            L  F L  L L++            F  LF FL+LL     L  L  L  L +++ + LL
Sbjct: 317  LS-FYLPPLDLVWHGFQAPVWFPYRFSFLFSFLILLLAAEALLHLKQLKKLKILISILLL 375

Query: 1133 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1192
            + LF+L+  L L            L+  LFLLL+L LLLLFL   +   L ++LL L++ 
Sbjct: 376  VLLFILVFLLNLSKHYSFLTQTNLLLTLLFLLLYLLLLLLFLKKQIRKKLVIILLLLVVV 435

Query: 1193 LFLLLFLFLLL 1203
            L L L  +L L
Sbjct: 436  LELGLNAYLSL 446

This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family. Length = 835

>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO

 Score = 65.3 bits (160), Expect = 2e-10
 Identities = 104/371 (28%), Positives = 151/371 (40%), Gaps = 32/371 (8%)

Query: 895  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL---FLFLLLLFLL 951
             L+ LF    L   + L +LL   L  L    +L   F  +  +  L     + L  F++
Sbjct: 78   LLVFLFPASQLPDAILLIILLKIGLAGLSFAYYLRKRFKKISKWSALLFSTAYALSGFVI 137

Query: 952  LFLFLLLFLLLLFLILPLFLL-----------LFLFLLLLFLLLFLFLLLFLLLLFLILP 1000
               F L++L  L L LPL +L               + L  LL+  F   +++ +FL+L 
Sbjct: 138  YNRFNLMWLDALIL-LPLIILGLERLIREKKPGLYIIALALLLISNFYFGYMICIFLVLY 196

Query: 1001 LFLLLFL-----FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLF 1051
                L               +   LL   +   ++LP  L L            LL F  
Sbjct: 197  FLYRLIFKDIKSRWKQFLRFIISSLLSGGISAVVLLPTVLGLLNNKRAYTEVSILLTFDI 256

Query: 1052 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1111
              L LL   LI          L  +++ L   LLL L     ++ L   L   LLLLFL+
Sbjct: 257  NPLDLLAKLLIGSFNFTQMGGLPNIYVGLLPLLLLILYFFNKLIKLKEKLLFALLLLFLI 316

Query: 1112 LFLFLLLFLLLLF-------LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1164
            L  F L  L L++            F  LF FL+LL     L  L  L  L +++ + LL
Sbjct: 317  LS-FYLPPLDLVWHGFQAPVWFPYRFSFLFSFLILLLAAEALLHLKQLKKLKILISILLL 375

Query: 1165 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1224
            + LF+L+  L L            L+  LFLLL+L LLLLFL   +   L ++LL L++ 
Sbjct: 376  VLLFILVFLLNLSKHYSFLTQTNLLLTLLFLLLYLLLLLLFLKKQIRKKLVIILLLLVVV 435

Query: 1225 LFLLLFLFLLL 1235
            L L L  +L L
Sbjct: 436  LELGLNAYLSL 446

This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family. Length = 835

>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO

 Score = 65.3 bits (160), Expect = 2e-10
 Identities = 104/371 (28%), Positives = 151/371 (40%), Gaps = 32/371 (8%)

Query: 927  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL---FLFLLLLFLL 983
             L+ LF    L   + L +LL   L  L    +L   F  +  +  L     + L  F++
Sbjct: 78   LLVFLFPASQLPDAILLIILLKIGLAGLSFAYYLRKRFKKISKWSALLFSTAYALSGFVI 137

Query: 984  LFLFLLLFLLLLFLILPLFLL-----------LFLFLLLLFLLLFLFLLLFLLLLFLILP 1032
               F L++L  L L LPL +L               + L  LL+  F   +++ +FL+L 
Sbjct: 138  YNRFNLMWLDALIL-LPLIILGLERLIREKKPGLYIIALALLLISNFYFGYMICIFLVLY 196

Query: 1033 LFLLLFL-----FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLF 1083
                L               +   LL   +   ++LP  L L            LL F  
Sbjct: 197  FLYRLIFKDIKSRWKQFLRFIISSLLSGGISAVVLLPTVLGLLNNKRAYTEVSILLTFDI 256

Query: 1084 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1143
              L LL   LI          L  +++ L   LLL L     ++ L   L   LLLLFL+
Sbjct: 257  NPLDLLAKLLIGSFNFTQMGGLPNIYVGLLPLLLLILYFFNKLIKLKEKLLFALLLLFLI 316

Query: 1144 LFLFLLLFLLLLF-------LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1196
            L  F L  L L++            F  LF FL+LL     L  L  L  L +++ + LL
Sbjct: 317  LS-FYLPPLDLVWHGFQAPVWFPYRFSFLFSFLILLLAAEALLHLKQLKKLKILISILLL 375

Query: 1197 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1256
            + LF+L+  L L            L+  LFLLL+L LLLLFL   +   L ++LL L++ 
Sbjct: 376  VLLFILVFLLNLSKHYSFLTQTNLLLTLLFLLLYLLLLLLFLKKQIRKKLVIILLLLVVV 435

Query: 1257 LFLLLFLFLLL 1267
            L L L  +L L
Sbjct: 436  LELGLNAYLSL 446

This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family. Length = 835

>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO

 Score = 65.3 bits (160), Expect = 2e-10
 Identities = 104/371 (28%), Positives = 151/371 (40%), Gaps = 32/371 (8%)

Query: 959  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL---FLFLLLLFLL 1015
             L+ LF    L   + L +LL   L  L    +L   F  +  +  L     + L  F++
Sbjct: 78   LLVFLFPASQLPDAILLIILLKIGLAGLSFAYYLRKRFKKISKWSALLFSTAYALSGFVI 137

Query: 1016 LFLFLLLFLLLLFLILPLFLL-----------LFLFLLLLFLLLFLFLLLFLLLLFLILP 1064
               F L++L  L L LPL +L               + L  LL+  F   +++ +FL+L 
Sbjct: 138  YNRFNLMWLDALIL-LPLIILGLERLIREKKPGLYIIALALLLISNFYFGYMICIFLVLY 196

Query: 1065 LFLLLFL-----FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLF 1115
                L               +   LL   +   ++LP  L L            LL F  
Sbjct: 197  FLYRLIFKDIKSRWKQFLRFIISSLLSGGISAVVLLPTVLGLLNNKRAYTEVSILLTFDI 256

Query: 1116 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1175
              L LL   LI          L  +++ L   LLL L     ++ L   L   LLLLFL+
Sbjct: 257  NPLDLLAKLLIGSFNFTQMGGLPNIYVGLLPLLLLILYFFNKLIKLKEKLLFALLLLFLI 316

Query: 1176 LFLFLLLFLLLLF-------LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1228
            L  F L  L L++            F  LF FL+LL     L  L  L  L +++ + LL
Sbjct: 317  LS-FYLPPLDLVWHGFQAPVWFPYRFSFLFSFLILLLAAEALLHLKQLKKLKILISILLL 375

Query: 1229 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1288
            + LF+L+  L L            L+  LFLLL+L LLLLFL   +   L ++LL L++ 
Sbjct: 376  VLLFILVFLLNLSKHYSFLTQTNLLLTLLFLLLYLLLLLLFLKKQIRKKLVIILLLLVVV 435

Query: 1289 LFLLLFLFLLL 1299
            L L L  +L L
Sbjct: 436  LELGLNAYLSL 446

This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family. Length = 835

>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]

 Score = 65.2 bits (159), Expect = 2e-10
 Identities = 69/251 (27%), Positives = 100/251 (39%)

Query: 803  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 862
              L+LPLF L F  L L         +++ LL  L L L  L +     +  +L L+ L+
Sbjct: 169  FELLLPLFALFFFLLALKAAKKLKKPVIYALLAGLALGLLALAWGGYYYILAILLLYALV 228

Query: 863  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 922
             L+L FL      +L    L+   LL L +L  LL           + L  ++L +L  L
Sbjct: 229  LLVLAFLRGKKTDILGFVGLVTLTLLSLLILPPLLGFSGYYYSGFSVLLGFIVLAVLGLL 288

Query: 923  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 982
            F L+    L       + L L L L+   L LFL L    +  I     +  L + L F 
Sbjct: 289  FSLVKNFELRKFFAYLVPLTLSLALILGGLLLFLELLRAYILPISGRLYVGGLQVYLPFG 348

Query: 983  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1042
             +     +FL L      LF     F LLL +LL  + L+       +  L  L+  F  
Sbjct: 349  TIAEAAPIFLPLGITNAALFGAAGFFALLLGILLLAYFLVRRPKKEGLFLLVWLVLSFYA 408

Query: 1043 LLFLLLFLFLL 1053
             L  + F F L
Sbjct: 409  ALTQVRFAFYL 419

Length = 773

>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]

 Score = 64.4 bits (157), Expect = 3e-10
 Identities = 108/379 (28%), Positives = 133/379 (35%), Gaps = 5/379 (1%)

Query: 967  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1026
                 LL   LLL+ L L L  L    L       +  +   +L         LL     
Sbjct: 3    ALRSRLLLWLLLLIALALLLPGLGSRPLWDPDEARYAEIAREMLESGDWFTPQLLGLPYF 62

Query: 1027 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1086
                L  +L    +LL         L   L      L ++ L       L  LL   +LL
Sbjct: 63   EKPPLVYWLQALSYLLFGVNEWSARLPSALAGALTALLVYWLAKRLFGRLAALLAALILL 122

Query: 1087 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1146
               L FLI  L LL       L L L L  L       L   L L L L L  L      
Sbjct: 123  LTPLFFLIGRLALLDAALAFFLTLALALLYLALRARGKLKWLLLLGLALGLGFLTKGPGA 182

Query: 1147 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1206
             LL  +LLL L+ P      L  LL  L L+L LLL LL +   L      F        
Sbjct: 183  LLLPLILLLLLLAP-----RLRRLLRDLRLWLGLLLGLLPVLPWLLAIQAQFAPYFGHLF 237

Query: 1207 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1266
            L F +   F  +          L+L+LL+L L +  +LLL    L L       L + LL
Sbjct: 238  LTFGWEEDFQRVASGDEHHSGPLWLYLLVLLLGVIPWLLLLPGALRLRWAKRGKLAVALL 297

Query: 1267 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1326
             L L L L LL F L    + P  L  +  L  L  L +L L   LLL  L     L L 
Sbjct: 298  FLLLWLLLPLLFFSLAAGKLPPYILPAYPALAALAGLGWLLLAALLLLYSLRRLGLLALI 357

Query: 1327 LFLLLLFLFLLLLFLLSSF 1345
            L L       LL  L  + 
Sbjct: 358  LGLTAAVALALLFLLGPAN 376

Length = 535

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 805 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLF 863
            +L LF  +FL   +L + L   L L +  L  +LP+ LL     LL  L +LF+  LL 
Sbjct: 9   ALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLLL 68

Query: 864 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 923
           LLLLF          +  L +F L+   L+  LL+L ++   F + FL +    L+    
Sbjct: 69  LLLLF--------KGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFN 120

Query: 924 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 983
           L     L F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L  LL
Sbjct: 121 L---GKLGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLL 177

Query: 984 LFLFLLLFLL 993
                LLFL 
Sbjct: 178 YLFLQLLFLG 187

Length = 650

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 837  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLF 895
             +L LF  +FL   +L + L   L L +  L  +LP+ LL     LL  L +LF+  LL 
Sbjct: 9    ALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLLL 68

Query: 896  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 955
            LLLLF          +  L +F L+   L+  LL+L ++   F + FL +    L+    
Sbjct: 69   LLLLF--------KGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFN 120

Query: 956  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1015
            L     L F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L  LL
Sbjct: 121  L---GKLGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLL 177

Query: 1016 LFLFLLLFLL 1025
                 LLFL 
Sbjct: 178  YLFLQLLFLG 187

Length = 650

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 869  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLF 927
             +L LF  +FL   +L + L   L L +  L  +LP+ LL     LL  L +LF+  LL 
Sbjct: 9    ALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLLL 68

Query: 928  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 987
            LLLLF          +  L +F L+   L+  LL+L ++   F + FL +    L+    
Sbjct: 69   LLLLF--------KGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFN 120

Query: 988  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1047
            L     L F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L  LL
Sbjct: 121  L---GKLGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLL 177

Query: 1048 LFLFLLLFLL 1057
                 LLFL 
Sbjct: 178  YLFLQLLFLG 187

Length = 650

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 901  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLF 959
             +L LF  +FL   +L + L   L L +  L  +LP+ LL     LL  L +LF+  LL 
Sbjct: 9    ALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLLL 68

Query: 960  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1019
            LLLLF          +  L +F L+   L+  LL+L ++   F + FL +    L+    
Sbjct: 69   LLLLF--------KGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFN 120

Query: 1020 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1079
            L     L F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L  LL
Sbjct: 121  L---GKLGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLL 177

Query: 1080 LFLFLLLFLL 1089
                 LLFL 
Sbjct: 178  YLFLQLLFLG 187

Length = 650

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 933  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLF 991
             +L LF  +FL   +L + L   L L +  L  +LP+ LL     LL  L +LF+  LL 
Sbjct: 9    ALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLLL 68

Query: 992  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1051
            LLLLF          +  L +F L+   L+  LL+L ++   F + FL +    L+    
Sbjct: 69   LLLLF--------KGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFN 120

Query: 1052 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1111
            L     L F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L  LL
Sbjct: 121  L---GKLGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLL 177

Query: 1112 LFLFLLLFLL 1121
                 LLFL 
Sbjct: 178  YLFLQLLFLG 187

Length = 650

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 965  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLF 1023
             +L LF  +FL   +L + L   L L +  L  +LP+ LL     LL  L +LF+  LL 
Sbjct: 9    ALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLLL 68

Query: 1024 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1083
            LLLLF          +  L +F L+   L+  LL+L ++   F + FL +    L+    
Sbjct: 69   LLLLF--------KGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFN 120

Query: 1084 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1143
            L     L F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L  LL
Sbjct: 121  L---GKLGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLL 177

Query: 1144 LFLFLLLFLL 1153
                 LLFL 
Sbjct: 178  YLFLQLLFLG 187

Length = 650

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 997  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLF 1055
             +L LF  +FL   +L + L   L L +  L  +LP+ LL     LL  L +LF+  LL 
Sbjct: 9    ALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLLL 68

Query: 1056 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1115
            LLLLF          +  L +F L+   L+  LL+L ++   F + FL +    L+    
Sbjct: 69   LLLLF--------KGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFN 120

Query: 1116 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1175
            L     L F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L  LL
Sbjct: 121  L---GKLGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLL 177

Query: 1176 LFLFLLLFLL 1185
                 LLFL 
Sbjct: 178  YLFLQLLFLG 187

Length = 650

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 1029 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLF 1087
             +L LF  +FL   +L + L   L L +  L  +LP+ LL     LL  L +LF+  LL 
Sbjct: 9    ALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLLL 68

Query: 1088 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1147
            LLLLF          +  L +F L+   L+  LL+L ++   F + FL +    L+    
Sbjct: 69   LLLLF--------KGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFN 120

Query: 1148 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1207
            L     L F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L  LL
Sbjct: 121  L---GKLGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLL 177

Query: 1208 LFLFLLLFLL 1217
                 LLFL 
Sbjct: 178  YLFLQLLFLG 187

Length = 650

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 1061 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLF 1119
             +L LF  +FL   +L + L   L L +  L  +LP+ LL     LL  L +LF+  LL 
Sbjct: 9    ALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLLL 68

Query: 1120 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1179
            LLLLF          +  L +F L+   L+  LL+L ++   F + FL +    L+    
Sbjct: 69   LLLLF--------KGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFN 120

Query: 1180 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1239
            L     L F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L  LL
Sbjct: 121  L---GKLGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLL 177

Query: 1240 LFLFLLLFLL 1249
                 LLFL 
Sbjct: 178  YLFLQLLFLG 187

Length = 650

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 1093 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLF 1151
             +L LF  +FL   +L + L   L L +  L  +LP+ LL     LL  L +LF+  LL 
Sbjct: 9    ALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLLL 68

Query: 1152 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1211
            LLLLF          +  L +F L+   L+  LL+L ++   F + FL +    L+    
Sbjct: 69   LLLLF--------KGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFN 120

Query: 1212 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1271
            L     L F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L  LL
Sbjct: 121  L---GKLGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLL 177

Query: 1272 LFLFLLLFLL 1281
                 LLFL 
Sbjct: 178  YLFLQLLFLG 187

Length = 650

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 64.0 bits (156), Expect = 3e-10
 Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 1125 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLF 1183
             +L LF  +FL   +L + L   L L +  L  +LP+ LL     LL  L +LF+  LL 
Sbjct: 9    ALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLLL 68

Query: 1184 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1243
            LLLLF          +  L +F L+   L+  LL+L ++   F + FL +    L+    
Sbjct: 69   LLLLF--------KGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFN 120

Query: 1244 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1303
            L     L F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L  LL
Sbjct: 121  L---GKLGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLL 177

Query: 1304 LFLFLLLFLL 1313
                 LLFL 
Sbjct: 178  YLFLQLLFLG 187

Length = 650

>gnl|CDD|220569 pfam10101, DUF2339, Predicted membrane protein (DUF2339)

 Score = 64.3 bits (157), Expect = 4e-10
 Identities = 120/462 (25%), Positives = 154/462 (33%), Gaps = 9/462 (1%)

Query: 775  AISFLLLFLFLLLLFLLLFLFLLLFLLLLFL-ILPLFLLLFLFLLLLFLLLFLFLLLFLL 833
             + F    +   L  LL+     L    L L  L L L   L       L  L   L  L
Sbjct: 220  TLLFGNPLVAFSLQALLVHDPYALAWSALGLAALYLALAFLLARRARLSLRLLAYSLLAL 279

Query: 834  LLFLILPLFLLLF--LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 891
             L  +     L     +  L + L    LL   +     L     L L LL L  LL L 
Sbjct: 280  ALAFVTLAIPLALSGRWTSLAWALEGAALLWLGVRQRRRLLRAFGLLLQLLALLSLLALL 339

Query: 892  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LL 948
            LL +L   FL   L   L    L    LL    L    L   +  LF L  L  L   L 
Sbjct: 340  LLGYLNSAFLTGLLLWALAAAALAAAWLLLAERLSRRRLRQGLAALFALAALAALALALT 399

Query: 949  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1008
              L   +L L L    L+L      ++   L + L  L  LL L L  L         L 
Sbjct: 400  MELSDAWLTLALAAQVLVLAALARRYVAPRLRWALKVLAALLLLRLTALPSLQAGTHPLA 459

Query: 1009 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1068
              LL        LL   L  L   L L  +L    L L L L +L   LL          
Sbjct: 460  HWLLLAYGLALALLLAALRLLRRDLQLRAWLEAAALHLWLLLLVLTRYLLWGGDGLAGAY 519

Query: 1069 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1128
                  LL LL     L++L       PL      +LLL    L   L L LL   L+  
Sbjct: 520  SLWEAALLTLLALALALVYLYRRRARWPLVYRAAAYLLLGLAPLAALLALLLLENPLLSG 579

Query: 1129 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1188
            +     L  L +   L   LL +LLL   +L L+L      + L  L    L+    L F
Sbjct: 580  IGGAAPLGFLPILNPL---LLAYLLLAPALLALWLRRLATPIRLKALRPAVLVAAAALGF 636

Query: 1189 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1230
            L L L +          L           +L+L+L + L++ 
Sbjct: 637  LWLTLEIRRLWHGWGGVLSSGTGEQYSYSVLWLLLGVALMIL 678

This domain, found in various hypothetical bacterial proteins, has no known function. Length = 738

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 63.9 bits (156), Expect = 4e-10
 Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 9/194 (4%)

Query: 1187 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1246
            L L  P    L L LLL +  L L    F L +FLI  L L      LL  +  FL LLL
Sbjct: 3    LTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLL 62

Query: 1247 FLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLFLILPL-------FLLLFLFLL 1298
             L    L+ PL  +L L          F  +++   +L  +           L L+  L 
Sbjct: 63   LLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLW 122

Query: 1299 LLFLLLFLFLLLFLLLLFLILPLFL-LLFLFLLLLFLFLLLLFLLSSFSSSSSSSFSYSS 1357
            L+ + L   LL+ L+++         L    + +L   L++L   + F  + +S F  + 
Sbjct: 123  LVLVGLLPALLIVLVIIRYYRVWLRRLWARLVSILLSLLVILAFAAPFYKNYASIFRNNG 182

Query: 1358 SSSSSSFSPLSPLF 1371
             S +  + P + L+
Sbjct: 183  DSLAKRYRPANYLY 196

Length = 555

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 63.6 bits (155), Expect = 4e-10
 Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 4/217 (1%)

Query: 1155 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1214
            L L  P    L L LLL +  L L    F L +FLI  L L      LL  +  FL LLL
Sbjct: 3    LTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLL 62

Query: 1215 FLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1273
             L    L+ PL  +L L          F  +++   +L  +          LL L+ LL 
Sbjct: 63   LLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLL- 121

Query: 1274 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1333
               L+ + LL  +L + +++  + + L  L    + + L LL ++         +  +  
Sbjct: 122  --WLVLVGLLPALLIVLVIIRYYRVWLRRLWARLVSILLSLLVILAFAAPFYKNYASIFR 179

Query: 1334 LFLLLLFLLSSFSSSSSSSFSYSSSSSSSSFSPLSPL 1370
                 L      ++   + F Y       S  PL  +
Sbjct: 180  NNGDSLAKRYRPANYLYALFGYYQGQVIKSLFPLLQI 216

Length = 555

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 63.2 bits (154), Expect = 6e-10
 Identities = 62/183 (33%), Positives = 86/183 (46%), Gaps = 4/183 (2%)

Query: 776 ISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 835
           ++ L LF  + L F +L +FLL  L LL   L   L + L    L LL  L +L  + LL
Sbjct: 8   LALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLL 67

Query: 836 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL-L 894
            L+L   L   +  L +F L+   L+  LL+L ++   F + FL +    L+    L  L
Sbjct: 68  LLLL---LFKGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFNLGKL 124

Query: 895 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 954
               L L+ P  +L  + L+LL LLL  +  L  L   LI     LL L LLL   L  L
Sbjct: 125 GFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLLYLFLQLL 184

Query: 955 FLL 957
           FL 
Sbjct: 185 FLG 187

Length = 650

>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]

 Score = 63.2 bits (154), Expect = 7e-10
 Identities = 68/255 (26%), Positives = 98/255 (38%), Gaps = 7/255 (2%)

Query: 774  DAISFLLLFLFLLLLFLLLFLFLLLFLL--LLFLILPLFLLLFLFL-----LLLFLLLFL 826
            D   F LL     L F LL L     L   +++ +L    L  L L       +  +L L
Sbjct: 165  DTDMFELLLPLFALFFFLLALKAAKKLKKPVIYALLAGLALGLLALAWGGYYYILAILLL 224

Query: 827  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 886
            + L+ L+L FL      +L    L+   LL L +L  LL           + L  ++L +
Sbjct: 225  YALVLLVLAFLRGKKTDILGFVGLVTLTLLSLLILPPLLGFSGYYYSGFSVLLGFIVLAV 284

Query: 887  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 946
            L  LF L+    L       + L L L L+   L LFL L    +  I     +  L + 
Sbjct: 285  LGLLFSLVKNFELRKFFAYLVPLTLSLALILGGLLLFLELLRAYILPISGRLYVGGLQVY 344

Query: 947  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1006
            L F  +     +FL L      LF     F LLL +LL  + L+       +  L  L+ 
Sbjct: 345  LPFGTIAEAAPIFLPLGITNAALFGAAGFFALLLGILLLAYFLVRRPKKEGLFLLVWLVL 404

Query: 1007 LFLLLLFLLLFLFLL 1021
             F   L  + F F L
Sbjct: 405  SFYAALTQVRFAFYL 419

Length = 773

>gnl|CDD|220569 pfam10101, DUF2339, Predicted membrane protein (DUF2339)

 Score = 62.4 bits (152), Expect = 2e-09
 Identities = 95/386 (24%), Positives = 118/386 (30%), Gaps = 1/386 (0%)

Query: 978  LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1037
            L L   +  FL   L L F    LFL+LF  + LL  +L          L   + L LL 
Sbjct: 164  LNLLGFVGTFLWGLLWLAFSTTELFLILFFLIFLLLAVLPALRWRLPARLRPYVDLTLL- 222

Query: 1038 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1097
            F   L+ F L  L +     L +  L L  L      LL     L L L    L  +   
Sbjct: 223  FGNPLVAFSLQALLVHDPYALAWSALGLAALYLALAFLLARRARLSLRLLAYSLLALALA 282

Query: 1098 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1157
            F+ L + L L      L   L    L  +        L    L L L   L L  LLL  
Sbjct: 283  FVTLAIPLALSGRWTSLAWALEGAALLWLGVRQRRRLLRAFGLLLQLLALLSLLALLLLG 342

Query: 1158 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1217
             L    L  L L  L         L L        L   L     L  L      L   L
Sbjct: 343  YLNSAFLTGLLLWALAAAALAAAWLLLAERLSRRRLRQGLAALFALAALAALALALTMEL 402

Query: 1218 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1277
                +        L L  L        L + L +   L L  L  L  L          L
Sbjct: 403  SDAWLTLALAAQVLVLAALARRYVAPRLRWALKVLAALLLLRLTALPSLQAGTHPLAHWL 462

Query: 1278 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLL 1337
            L    L L L L  L  L   L          L L LL L+L  +LL     L     L 
Sbjct: 463  LLAYGLALALLLAALRLLRRDLQLRAWLEAAALHLWLLLLVLTRYLLWGGDGLAGAYSLW 522

Query: 1338 LLFLLSSFSSSSSSSFSYSSSSSSSS 1363
               LL+  + + +  + Y   +    
Sbjct: 523  EAALLTLLALALALVYLYRRRARWPL 548

This domain, found in various hypothetical bacterial proteins, has no known function. Length = 738

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 61.6 bits (150), Expect = 2e-09
 Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 15/171 (8%)

Query: 803 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 862
           L L  P    L L LLL +  L L    F L +FLI  L L      LL  +  FL LLL
Sbjct: 3   LTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLL 62

Query: 863 FLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLF------------LILPLFLLL 909
            L    L+ PL  +L L          F  +++   +L             L+   FLL 
Sbjct: 63  LLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLW 122

Query: 910 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 960
            + + LL  LL + +++    ++  L       + +LL  L++  F   F 
Sbjct: 123 LVLVGLLPALLIVLVIIRYYRVW--LRRLWARLVSILLSLLVILAFAAPFY 171

Length = 555

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 61.6 bits (150), Expect = 2e-09
 Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 15/171 (8%)

Query: 835 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 894
           L L  P    L L LLL +  L L    F L +FLI  L L      LL  +  FL LLL
Sbjct: 3   LTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLL 62

Query: 895 FLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLF------------LILPLFLLL 941
            L    L+ PL  +L L          F  +++   +L             L+   FLL 
Sbjct: 63  LLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLW 122

Query: 942 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 992
            + + LL  LL + +++    ++  L       + +LL  L++  F   F 
Sbjct: 123 LVLVGLLPALLIVLVIIRYYRVW--LRRLWARLVSILLSLLVILAFAAPFY 171

Length = 555

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 61.6 bits (150), Expect = 2e-09
 Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 15/171 (8%)

Query: 867  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 926
            L L  P    L L LLL +  L L    F L +FLI  L L      LL  +  FL LLL
Sbjct: 3    LTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLL 62

Query: 927  FLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLF------------LILPLFLLL 973
             L    L+ PL  +L L          F  +++   +L             L+   FLL 
Sbjct: 63   LLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLW 122

Query: 974  FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1024
             + + LL  LL + +++    ++  L       + +LL  L++  F   F 
Sbjct: 123  LVLVGLLPALLIVLVIIRYYRVW--LRRLWARLVSILLSLLVILAFAAPFY 171

Length = 555

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 61.6 bits (150), Expect = 2e-09
 Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 15/171 (8%)

Query: 899  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 958
            L L  P    L L LLL +  L L    F L +FLI  L L      LL  +  FL LLL
Sbjct: 3    LTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLL 62

Query: 959  FLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLF------------LILPLFLLL 1005
             L    L+ PL  +L L          F  +++   +L             L+   FLL 
Sbjct: 63   LLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLW 122

Query: 1006 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1056
             + + LL  LL + +++    ++  L       + +LL  L++  F   F 
Sbjct: 123  LVLVGLLPALLIVLVIIRYYRVW--LRRLWARLVSILLSLLVILAFAAPFY 171

Length = 555

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 61.6 bits (150), Expect = 2e-09
 Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 15/171 (8%)

Query: 931  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 990
            L L  P    L L LLL +  L L    F L +FLI  L L      LL  +  FL LLL
Sbjct: 3    LTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLL 62

Query: 991  FLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLF------------LILPLFLLL 1037
             L    L+ PL  +L L          F  +++   +L             L+   FLL 
Sbjct: 63   LLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLW 122

Query: 1038 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1088
             + + LL  LL + +++    ++  L       + +LL  L++  F   F 
Sbjct: 123  LVLVGLLPALLIVLVIIRYYRVW--LRRLWARLVSILLSLLVILAFAAPFY 171

Length = 555

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 61.6 bits (150), Expect = 2e-09
 Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 15/171 (8%)

Query: 963  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1022
            L L  P    L L LLL +  L L    F L +FLI  L L      LL  +  FL LLL
Sbjct: 3    LTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLL 62

Query: 1023 FLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLF------------LILPLFLLL 1069
             L    L+ PL  +L L          F  +++   +L             L+   FLL 
Sbjct: 63   LLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLW 122

Query: 1070 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1120
             + + LL  LL + +++    ++  L       + +LL  L++  F   F 
Sbjct: 123  LVLVGLLPALLIVLVIIRYYRVW--LRRLWARLVSILLSLLVILAFAAPFY 171

Length = 555

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 61.6 bits (150), Expect = 2e-09
 Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 15/171 (8%)

Query: 995  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1054
            L L  P    L L LLL +  L L    F L +FLI  L L      LL  +  FL LLL
Sbjct: 3    LTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLL 62

Query: 1055 FLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLF------------LILPLFLLL 1101
             L    L+ PL  +L L          F  +++   +L             L+   FLL 
Sbjct: 63   LLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLW 122

Query: 1102 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1152
             + + LL  LL + +++    ++  L       + +LL  L++  F   F 
Sbjct: 123  LVLVGLLPALLIVLVIIRYYRVW--LRRLWARLVSILLSLLVILAFAAPFY 171

Length = 555

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 61.6 bits (150), Expect = 2e-09
 Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 15/171 (8%)

Query: 1027 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1086
            L L  P    L L LLL +  L L    F L +FLI  L L      LL  +  FL LLL
Sbjct: 3    LTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLL 62

Query: 1087 FLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLF------------LILPLFLLL 1133
             L    L+ PL  +L L          F  +++   +L             L+   FLL 
Sbjct: 63   LLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLW 122

Query: 1134 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1184
             + + LL  LL + +++    ++  L       + +LL  L++  F   F 
Sbjct: 123  LVLVGLLPALLIVLVIIRYYRVW--LRRLWARLVSILLSLLVILAFAAPFY 171

Length = 555

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 61.6 bits (150), Expect = 2e-09
 Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 15/171 (8%)

Query: 1091 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1150
            L L  P    L L LLL +  L L    F L +FLI  L L      LL  +  FL LLL
Sbjct: 3    LTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLL 62

Query: 1151 FLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLF------------LILPLFLLL 1197
             L    L+ PL  +L L          F  +++   +L             L+   FLL 
Sbjct: 63   LLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLW 122

Query: 1198 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1248
             + + LL  LL + +++    ++  L       + +LL  L++  F   F 
Sbjct: 123  LVLVGLLPALLIVLVIIRYYRVW--LRRLWARLVSILLSLLVILAFAAPFY 171

Length = 555

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 61.3 bits (149), Expect = 3e-09
 Identities = 63/217 (29%), Positives = 92/217 (42%), Gaps = 13/217 (5%)

Query: 1163 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1222
            L   L LL LF  +FL   + L+ L  +L L +    F+L + LL     LLF L +   
Sbjct: 4    LNKTLALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPI--- 60

Query: 1223 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF--LLLLFLLLFLFLLLFL 1280
              LF++  L LLLLF  +    +  L+L  LI  L +L  LF    + FL +   LL+  
Sbjct: 61   --LFIVSLLLLLLLFKGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIED 118

Query: 1281 LLL----FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFL 1336
              L    F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L    L
Sbjct: 119  FNLGKLGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVL--ALL 176

Query: 1337 LLLFLLSSFSSSSSSSFSYSSSSSSSSFSPLSPLFDF 1373
            L LFL   F          +++      +P   L +F
Sbjct: 177  LYLFLQLLFLGEILDPALLAAAFDRLYIAPYLGLDNF 213

Length = 650

>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]

 Score = 60.6 bits (147), Expect = 3e-09
 Identities = 133/413 (32%), Positives = 174/413 (42%), Gaps = 12/413 (2%)

Query: 766  PNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 825
            P  I+  S  I  L       L+FL + L  L  L    LIL   LL  L LLLLFL + 
Sbjct: 4    PFLILALSFLIPKLGALWIAALVFLFISLAFLAGLGSTILILAALLLALLLLLLLFLPVA 63

Query: 826  LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 885
              LLL LL L L L L LLL L+LL   L     +LL   +L L+L   LLLF+ L  L 
Sbjct: 64   FKLLLSLLNLLLFLRLLLLLLLWLLFSSLSAGAPILLLATILLLLLTARLLLFISLFALL 123

Query: 886  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL-LLFLF 944
            L   + LL+ L  + L L L L L         L  L+ +L +          +    LF
Sbjct: 124  LNGRILLLVLLGSVLLGLLLALGLAGAGAEELALANLWRVLGVYAFKNYAGSLMAAALLF 183

Query: 945  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1004
              LL  +L  +LL  LL    +L   LL     L   L L L L LFL+LL L   L L 
Sbjct: 184  PALLLWILGSWLLGTLLAALALLIALLLTGSRSLAALLALILLLALFLVLLLLRRVLLLG 243

Query: 1005 LFLFLLLLFLLLFLFLLLFLLLLFLI--------LPLFLLLFLFLLLLFL---LLFLFLL 1053
            L   LL L L+  + + LF  L  L+        L   L ++   L       +      
Sbjct: 244  LLAALLALILIALVGIELFEPLELLLARLGTDSSLTGRLDIWEAALEAIKERPIFGYGYG 303

Query: 1054 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1113
             F   L L+     + + + L    L    L L +LL   IL L LLL L L++L L L 
Sbjct: 304  AFWRSLELLNSRLWIYYEWALRANFLHAHNLYLEILLETGILGLLLLLALLLVILLLFLK 363

Query: 1114 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1166
                  L  L  +L L ++LF+ L      LF  +     +LF+   L L  F
Sbjct: 364  RTRKNALAALLGLLFLGIILFVGLFSEVESLFFAITSSFWVLFVAGLLGLAAF 416

Length = 424

>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO

 Score = 60.7 bits (148), Expect = 5e-09
 Identities = 98/339 (28%), Positives = 144/339 (42%), Gaps = 25/339 (7%)

Query: 777  SFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--- 833
            ++ L   F  +      LF   + L  F+I   F L++L  L+L  L+ L L   +    
Sbjct: 108  AYYLRKRFKKISKWSALLFSTAYALSGFVIYNRFNLMWLDALILLPLIILGLERLIREKK 167

Query: 834  LLFLILPLFLLL-----FLFLLLLFLLL-FLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 887
                I+ L LLL     F +++ +FL+L FL+ L+F  +          +   LL   + 
Sbjct: 168  PGLYIIALALLLISNFYFGYMICIFLVLYFLYRLIFKDIKSRWKQFLRFIISSLLSGGIS 227

Query: 888  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL----ILPLFLLLFL 943
              + L   L LL        +  L    +  L  L  LL     F     +  +++ L  
Sbjct: 228  AVVLLPTVLGLLNNKRAYTEVSILLTFDINPLDLLAKLLIGSFNFTQMGGLPNIYVGLLP 287

Query: 944  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL------------FLFLLLF 991
             LLL+       + L   LLF +L LFL+L  +L  L L+             F FL  F
Sbjct: 288  LLLLILYFFNKLIKLKEKLLFALLLLFLILSFYLPPLDLVWHGFQAPVWFPYRFSFLFSF 347

Query: 992  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1051
            L+LL     L  L  L  L + + + L +LLF+L+  L L           LL  LLFL 
Sbjct: 348  LILLLAAEALLHLKQLKKLKILISILLLVLLFILVFLLNLSKHYSFLTQTNLLLTLLFLL 407

Query: 1052 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1090
            L L LLLLFL   +   L + LLLL ++L L L  +L L
Sbjct: 408  LYLLLLLLFLKKQIRKKLVIILLLLVVVLELGLNAYLSL 446

This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family. Length = 835

>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO

 Score = 60.3 bits (147), Expect = 5e-09
 Identities = 90/331 (27%), Positives = 132/331 (39%), Gaps = 59/331 (17%)

Query: 771  TQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL-----------LFLFLLL 819
              S   + L    + L  F++   F L++L  L L LPL +L               + L
Sbjct: 117  KISKWSALLFSTAYALSGFVIYNRFNLMWLDALIL-LPLIILGLERLIREKKPGLYIIAL 175

Query: 820  LFLLLFLFLLLFLLLLFLILPLFLLLFL-----FLLLLFLLLFLFLLLFLLLLFLILPLF 874
              LL+  F   +++ +FL+L     L               +   LL   +   ++LP  
Sbjct: 176  ALLLISNFYFGYMICIFLVLYFLYRLIFKDIKSRWKQFLRFIISSLLSGGISAVVLLPTV 235

Query: 875  LLL-----------FLFLLLLFLLLFLFLLLF----------LLLLFLILPLFLLLFLFL 913
            L L            L    +  L  L  LL           L  +++ L   LLL L+ 
Sbjct: 236  LGLLNNKRAYTEVSILLTFDINPLDLLAKLLIGSFNFTQMGGLPNIYVGLLPLLLLILYF 295

Query: 914  LLLFL-----LLFLFLLLFLLLLFLILPL----------------FLLLFLFLLLLFLLL 952
                +     LLF  LLLFL+L F + PL                F  LF FL+LL    
Sbjct: 296  FNKLIKLKEKLLFALLLLFLILSFYLPPLDLVWHGFQAPVWFPYRFSFLFSFLILLLAAE 355

Query: 953  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1012
             L  L  L  L +++ + LL+ LF+L+  L L            L+  LFLLL+L LLLL
Sbjct: 356  ALLHLKQLKKLKILISILLLVLLFILVFLLNLSKHYSFLTQTNLLLTLLFLLLYLLLLLL 415

Query: 1013 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1043
            FL   +   L ++LL L++ L L L  +L L
Sbjct: 416  FLKKQIRKKLVIILLLLVVVLELGLNAYLSL 446

This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family. Length = 835

>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]

 Score = 59.8 bits (145), Expect = 5e-09
 Identities = 133/415 (32%), Positives = 175/415 (42%), Gaps = 12/415 (2%)

Query: 796  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 855
             + FL+L    L   L       L+FL + L  L  L    LIL   LL  L LLLLFL 
Sbjct: 2    SVPFLILALSFLIPKLGALWIAALVFLFISLAFLAGLGSTILILAALLLALLLLLLLFLP 61

Query: 856  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 915
            +   LLL LL L L L L LLL L+LL   L     +LL   +L L+L   LLLF+ L  
Sbjct: 62   VAFKLLLSLLNLLLFLRLLLLLLLWLLFSSLSAGAPILLLATILLLLLTARLLLFISLFA 121

Query: 916  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL-LLF 974
            L L   + LL+ L  + L L L L L         L  L+ +L +          +    
Sbjct: 122  LLLNGRILLLVLLGSVLLGLLLALGLAGAGAEELALANLWRVLGVYAFKNYAGSLMAAAL 181

Query: 975  LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1034
            LF  LL  +L  +LL  LL    +L   LL     L   L L L L LFL+LL L   L 
Sbjct: 182  LFPALLLWILGSWLLGTLLAALALLIALLLTGSRSLAALLALILLLALFLVLLLLRRVLL 241

Query: 1035 LLLFLFLLLLFLLLFLFLLLFLLLLFLI--------LPLFLLLFLFLLLLFL---LLFLF 1083
            L L   LL L L+  + + LF  L  L+        L   L ++   L       +    
Sbjct: 242  LGLLAALLALILIALVGIELFEPLELLLARLGTDSSLTGRLDIWEAALEAIKERPIFGYG 301

Query: 1084 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1143
               F   L L+     + + + L    L    L L +LL   IL L LLL L L++L L 
Sbjct: 302  YGAFWRSLELLNSRLWIYYEWALRANFLHAHNLYLEILLETGILGLLLLLALLLVILLLF 361

Query: 1144 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1198
            L       L  L  +L L ++LF+ L      LF  +     +LF+   L L  F
Sbjct: 362  LKRTRKNALAALLGLLFLGIILFVGLFSEVESLFFAITSSFWVLFVAGLLGLAAF 416

Length = 424

>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]

 Score = 58.7 bits (142), Expect = 1e-08
 Identities = 123/404 (30%), Positives = 161/404 (39%), Gaps = 7/404 (1%)

Query: 938  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 997
               L   L  L++   +FL + L  L  +    L+L   LL L LLL LFL +   LL  
Sbjct: 10   LSFLIPKLGALWIAALVFLFISLAFLAGLGSTILILAALLLALLLLLLLFLPVAFKLLLS 69

Query: 998  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1057
            +L L L L L LLLL  LLF  L     +L L   L LLL   LLL   L  L L   +L
Sbjct: 70   LLNLLLFLRLLLLLLLWLLFSSLSAGAPILLLATILLLLLTARLLLFISLFALLLNGRIL 129

Query: 1058 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1117
            LL L+  + L L L L L         L  L  +  +          +    L   L L 
Sbjct: 130  LLVLLGSVLLGLLLALGLAGAGAEELALANLWRVLGVYAFKNYAGSLMAAALLFPALLLW 189

Query: 1118 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1177
            +    L   L   L L + LLL        LL  +LLL L L L LL  + LL L   L 
Sbjct: 190  ILGSWLLGTLLAALALLIALLLTGSRSLAALLALILLLALFLVLLLLRRVLLLGLLAALL 249

Query: 1178 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF-------LLLF 1230
              +L+ L+ + L  PL LLL        L   L +    L      P+F           
Sbjct: 250  ALILIALVGIELFEPLELLLARLGTDSSLTGRLDIWEAALEAIKERPIFGYGYGAFWRSL 309

Query: 1231 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1290
              L     + + + L    L    L L +LL   +L L LLL L L++ LL L       
Sbjct: 310  ELLNSRLWIYYEWALRANFLHAHNLYLEILLETGILGLLLLLALLLVILLLFLKRTRKNA 369

Query: 1291 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1334
            L   L LL L ++LF+ L   +  LF  +     +     LL L
Sbjct: 370  LAALLGLLFLGIILFVGLFSEVESLFFAITSSFWVLFVAGLLGL 413

Length = 424

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 58.6 bits (142), Expect = 2e-08
 Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 15/165 (9%)

Query: 777 SFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 836
               L L LLL +  L L    F L +FLI  L L      LL  +  FL LLL L    
Sbjct: 9   KLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLLLLSFPR 68

Query: 837 LILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLF------------LILPLFLLLFLFLLL 883
           L+ PL  +L L          F  +++   +L             L+   FLL  + + L
Sbjct: 69  LLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLWLVLVGL 128

Query: 884 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 928
           L  LL + +++    ++  L       + +LL  L++  F   F 
Sbjct: 129 LPALLIVLVIIRYYRVW--LRRLWARLVSILLSLLVILAFAAPFY 171

Length = 555

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 57.8 bits (140), Expect = 3e-08
 Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 7/163 (4%)

Query: 774 DAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP-LFLLLFLFLLLLFLLLFLFLLLFL 832
                 LL L +  L  +L + LL   L L   LP LF++  L LLLLF  +    +  L
Sbjct: 25  LVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLLLLLLLFKGVDALNIFRL 84

Query: 833 LLLFLILPLFLLLFLF--LLLLFLLLFLFLLLFLLLL----FLILPLFLLLFLFLLLLFL 886
           +L  LI  L +L  LF    + FL +   LL+    L    F  L L     +  ++  +
Sbjct: 85  ILALLISILLILDILFYRFFIDFLTIPNALLIEDFNLGKLGFSALSLLYPEDILFVVDLI 144

Query: 887 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 929
           LL L L+ +  L  L   L  L    L+L  LL     LLFL 
Sbjct: 145 LLILLLVFYWRLAGLTSKLIPLFVRLLVLALLLYLFLQLLFLG 187

Length = 650

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 57.4 bits (139), Expect = 3e-08
 Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 19/173 (10%)

Query: 1125 LILPLFLLLFLFLLLLFLLLFLFLLL----FLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1180
            + L L       L L  LL + FLLL    F L +FLI  L L      LL  +  FL L
Sbjct: 1    MNLTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLL 60

Query: 1181 LLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLLLLF------------LILPLFL 1227
            LL L    L+ PL  +L L          F  +++   +L             L+   FL
Sbjct: 61   LLLLSFPRLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFL 120

Query: 1228 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1280
            L  + + LL  LL + +++    ++  L       + +LL  L++  F   F 
Sbjct: 121  LWLVLVGLLPALLIVLVIIRYYRVW--LRRLWARLVSILLSLLVILAFAAPFY 171

Length = 555

>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 121/392 (30%), Positives = 156/392 (39%), Gaps = 3/392 (0%)

Query: 970  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1029
               L   L  L++   +FL + L  L  +    L+L   LL L LLL LFL +   LL  
Sbjct: 10   LSFLIPKLGALWIAALVFLFISLAFLAGLGSTILILAALLLALLLLLLLFLPVAFKLLLS 69

Query: 1030 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1089
            +L L L L L LLLL  LLF  L     +L L   L LLL   LLL   L  L L   +L
Sbjct: 70   LLNLLLFLRLLLLLLLWLLFSSLSAGAPILLLATILLLLLTARLLLFISLFALLLNGRIL 129

Query: 1090 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1149
            LL L+  + L L L L L         L  L  +  +          +    L   L L 
Sbjct: 130  LLVLLGSVLLGLLLALGLAGAGAEELALANLWRVLGVYAFKNYAGSLMAAALLFPALLLW 189

Query: 1150 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1209
            +    L   L   L L + LLL        LL  +LLL L L L LL  + LL L   L 
Sbjct: 190  ILGSWLLGTLLAALALLIALLLTGSRSLAALLALILLLALFLVLLLLRRVLLLGLLAALL 249

Query: 1210 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF---LLLFLFLL 1266
              +L+ L+ + L  PL LLL        L   L +    L      P+F      F   L
Sbjct: 250  ALILIALVGIELFEPLELLLARLGTDSSLTGRLDIWEAALEAIKERPIFGYGYGAFWRSL 309

Query: 1267 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1326
             L          + L    +    L L + L    L L L L L L++L L L       
Sbjct: 310  ELLNSRLWIYYEWALRANFLHAHNLYLEILLETGILGLLLLLALLLVILLLFLKRTRKNA 369

Query: 1327 LFLLLLFLFLLLLFLLSSFSSSSSSSFSYSSS 1358
            L  LL  LFL ++  +  FS   S  F+ +SS
Sbjct: 370  LAALLGLLFLGIILFVGLFSEVESLFFAITSS 401

Length = 424

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 57.6 bits (140), Expect = 4e-08
 Identities = 76/293 (25%), Positives = 113/293 (38%), Gaps = 50/293 (17%)

Query: 1084 LLLFLLLLFLILPLFLLLFLFLL-LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1142
            +L+ L ++ L+L L  LL       L+     +L +F   L   + LFLL+FL       
Sbjct: 5    VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIF----- 59

Query: 1143 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1202
              FLFL L LLL +   P F+ L        L  +  ++L    L L+    +L  L  L
Sbjct: 60   --FLFLFLNLLLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVLGLLAGL 117

Query: 1203 LLF-----LLLFLF--------LLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLF 1247
                    +LLFL          +    + F +  LP   LL  +LL L LL  +  LL 
Sbjct: 118  SASSRWETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLLALLLLALIATLLT 177

Query: 1248 LLL--------LFLILPLFLLLFLFLLLLFLLLFLFLLLFL---LLLF------------ 1284
              L         F  L       L +LL    L      +L    LL+            
Sbjct: 178  YYLYGGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELLYSGRGVVTGAGYT 237

Query: 1285 ---LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1334
                +LP +L+L +  LL+ +L F  +      L   + L LL+ L +LL  +
Sbjct: 238  DVHAVLPAYLILAVIALLVAVLFFANIFRRKWRL-PAIALALLVVLAILLGGV 289

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]

 Score = 56.7 bits (137), Expect = 5e-08
 Identities = 96/268 (35%), Positives = 121/268 (45%), Gaps = 1/268 (0%)

Query: 956  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1015
             + FL+L    L   L       L+FL + L  L  L    LIL   LL  L LLLLFL 
Sbjct: 2    SVPFLILALSFLIPKLGALWIAALVFLFISLAFLAGLGSTILILAALLLALLLLLLLFLP 61

Query: 1016 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1075
            +   LLL LL L L L L LLL L+LL   L     +LL   +L L+L   LLLF+ L  
Sbjct: 62   VAFKLLLSLLNLLLFLRLLLLLLLWLLFSSLSAGAPILLLATILLLLLTARLLLFISLFA 121

Query: 1076 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL-LLF 1134
            L L   + LL+ L  + L L L L L         L  L+ +L +          +    
Sbjct: 122  LLLNGRILLLVLLGSVLLGLLLALGLAGAGAEELALANLWRVLGVYAFKNYAGSLMAAAL 181

Query: 1135 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1194
            LF  LL  +L  +LL  LL    +L   LL     L   L L L L LFL+LL L   L 
Sbjct: 182  LFPALLLWILGSWLLGTLLAALALLIALLLTGSRSLAALLALILLLALFLVLLLLRRVLL 241

Query: 1195 LLLFLFLLLLFLLLFLFLLLFLLLLFLI 1222
            L L   LL L L+  + + LF  L  L+
Sbjct: 242  LGLLAALLALILIALVGIELFEPLELLL 269

Length = 424

>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 56.6 bits (137), Expect = 6e-08
 Identities = 64/214 (29%), Positives = 84/214 (39%), Gaps = 1/214 (0%)

Query: 841  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 900
               L   ++L       L  L+F  L  L  P     +L    L  LL+L          
Sbjct: 2    RAGLARQWVLGRPARRLLLALVFGALFALAFPPPDWWWLAWFSLAPLLWLVRGAPTSWEG 61

Query: 901  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 960
            L    FL  F F L  F  L   L + L LL + LPL +LL    L LFLLL   L   L
Sbjct: 62   LAKSGFLFGFGFFLAGFYWLGTSLGVGLGLLAVALPLLVLLLAAWLALFLLLVAVLTCRL 121

Query: 961  LLLFLILPLFLLLFLFLLLLFLLLFLFLLL-FLLLLFLILPLFLLLFLFLLLLFLLLFLF 1019
                L++P   +   +L    L  F +LLL +       L     L    LL FL++ + 
Sbjct: 122  WFALLVVPSAWVAAEWLRGWSLTGFPWLLLGYSQWSPSPLLQLASLGGVWLLSFLVVAVN 181

Query: 1020 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1053
             LL  +LL       LLL   LL++ L     LL
Sbjct: 182  ALLASVLLKRATGGRLLLLGLLLVVLLAYGCALL 215

Length = 518

>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 56.6 bits (137), Expect = 6e-08
 Identities = 64/214 (29%), Positives = 84/214 (39%), Gaps = 1/214 (0%)

Query: 905  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 964
               L   ++L       L  L+F  L  L  P     +L    L  LL+L          
Sbjct: 2    RAGLARQWVLGRPARRLLLALVFGALFALAFPPPDWWWLAWFSLAPLLWLVRGAPTSWEG 61

Query: 965  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1024
            L    FL  F F L  F  L   L + L LL + LPL +LL    L LFLLL   L   L
Sbjct: 62   LAKSGFLFGFGFFLAGFYWLGTSLGVGLGLLAVALPLLVLLLAAWLALFLLLVAVLTCRL 121

Query: 1025 LLLFLILPLFLLLFLFLLLLFLLLFLFLLL-FLLLLFLILPLFLLLFLFLLLLFLLLFLF 1083
                L++P   +   +L    L  F +LLL +       L     L    LL FL++ + 
Sbjct: 122  WFALLVVPSAWVAAEWLRGWSLTGFPWLLLGYSQWSPSPLLQLASLGGVWLLSFLVVAVN 181

Query: 1084 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1117
             LL  +LL       LLL   LL++ L     LL
Sbjct: 182  ALLASVLLKRATGGRLLLLGLLLVVLLAYGCALL 215

Length = 518

>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 56.6 bits (137), Expect = 6e-08
 Identities = 64/214 (29%), Positives = 84/214 (39%), Gaps = 1/214 (0%)

Query: 969  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1028
               L   ++L       L  L+F  L  L  P     +L    L  LL+L          
Sbjct: 2    RAGLARQWVLGRPARRLLLALVFGALFALAFPPPDWWWLAWFSLAPLLWLVRGAPTSWEG 61

Query: 1029 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1088
            L    FL  F F L  F  L   L + L LL + LPL +LL    L LFLLL   L   L
Sbjct: 62   LAKSGFLFGFGFFLAGFYWLGTSLGVGLGLLAVALPLLVLLLAAWLALFLLLVAVLTCRL 121

Query: 1089 LLLFLILPLFLLLFLFLLLLFLLLFLFLLL-FLLLLFLILPLFLLLFLFLLLLFLLLFLF 1147
                L++P   +   +L    L  F +LLL +       L     L    LL FL++ + 
Sbjct: 122  WFALLVVPSAWVAAEWLRGWSLTGFPWLLLGYSQWSPSPLLQLASLGGVWLLSFLVVAVN 181

Query: 1148 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1181
             LL  +LL       LLL   LL++ L     LL
Sbjct: 182  ALLASVLLKRATGGRLLLLGLLLVVLLAYGCALL 215

Length = 518

>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 56.6 bits (137), Expect = 6e-08
 Identities = 64/214 (29%), Positives = 84/214 (39%), Gaps = 1/214 (0%)

Query: 1033 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1092
               L   ++L       L  L+F  L  L  P     +L    L  LL+L          
Sbjct: 2    RAGLARQWVLGRPARRLLLALVFGALFALAFPPPDWWWLAWFSLAPLLWLVRGAPTSWEG 61

Query: 1093 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1152
            L    FL  F F L  F  L   L + L LL + LPL +LL    L LFLLL   L   L
Sbjct: 62   LAKSGFLFGFGFFLAGFYWLGTSLGVGLGLLAVALPLLVLLLAAWLALFLLLVAVLTCRL 121

Query: 1153 LLLFLILPLFLLLFLFLLLLFLLLFLFLLL-FLLLLFLILPLFLLLFLFLLLLFLLLFLF 1211
                L++P   +   +L    L  F +LLL +       L     L    LL FL++ + 
Sbjct: 122  WFALLVVPSAWVAAEWLRGWSLTGFPWLLLGYSQWSPSPLLQLASLGGVWLLSFLVVAVN 181

Query: 1212 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1245
             LL  +LL       LLL   LL++ L     LL
Sbjct: 182  ALLASVLLKRATGGRLLLLGLLLVVLLAYGCALL 215

Length = 518

>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 56.6 bits (137), Expect = 6e-08
 Identities = 64/214 (29%), Positives = 84/214 (39%), Gaps = 1/214 (0%)

Query: 1097 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1156
               L   ++L       L  L+F  L  L  P     +L    L  LL+L          
Sbjct: 2    RAGLARQWVLGRPARRLLLALVFGALFALAFPPPDWWWLAWFSLAPLLWLVRGAPTSWEG 61

Query: 1157 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1216
            L    FL  F F L  F  L   L + L LL + LPL +LL    L LFLLL   L   L
Sbjct: 62   LAKSGFLFGFGFFLAGFYWLGTSLGVGLGLLAVALPLLVLLLAAWLALFLLLVAVLTCRL 121

Query: 1217 LLLFLILPLFLLLFLFLLLLFLLLFLFLLL-FLLLLFLILPLFLLLFLFLLLLFLLLFLF 1275
                L++P   +   +L    L  F +LLL +       L     L    LL FL++ + 
Sbjct: 122  WFALLVVPSAWVAAEWLRGWSLTGFPWLLLGYSQWSPSPLLQLASLGGVWLLSFLVVAVN 181

Query: 1276 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1309
             LL  +LL       LLL   LL++ L     LL
Sbjct: 182  ALLASVLLKRATGGRLLLLGLLLVVLLAYGCALL 215

Length = 518

>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 56.6 bits (137), Expect = 6e-08
 Identities = 64/211 (30%), Positives = 84/211 (39%), Gaps = 1/211 (0%)

Query: 780 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 839
           L   ++L       L  L+F  L  L  P     +L    L  LL+L          L  
Sbjct: 5   LARQWVLGRPARRLLLALVFGALFALAFPPPDWWWLAWFSLAPLLWLVRGAPTSWEGLAK 64

Query: 840 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 899
             FL  F F L  F  L   L + L LL + LPL +LL    L LFLLL   L   L   
Sbjct: 65  SGFLFGFGFFLAGFYWLGTSLGVGLGLLAVALPLLVLLLAAWLALFLLLVAVLTCRLWFA 124

Query: 900 FLILPLFLLLFLFLLLLFLLLFLFLLL-FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 958
            L++P   +   +L    L  F +LLL +       L     L    LL FL++ +  LL
Sbjct: 125 LLVVPSAWVAAEWLRGWSLTGFPWLLLGYSQWSPSPLLQLASLGGVWLLSFLVVAVNALL 184

Query: 959 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 989
             +LL       LLL   LL++ L     LL
Sbjct: 185 ASVLLKRATGGRLLLLGLLLVVLLAYGCALL 215

Length = 518

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 56.4 bits (137), Expect = 9e-08
 Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 38/300 (12%)

Query: 796  LLLFLLLLFLILPLFLLLFLFLL-LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 854
            +L+ L ++ L+L L  LL       L+     +L +F   L   + LFLL+FL       
Sbjct: 5    VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIF----- 59

Query: 855  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 914
              FLFL L LLL +   P F+ L        L  +  ++L    L L+    +L  L  L
Sbjct: 60   --FLFLFLNLLLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVLGLLAGL 117

Query: 915  LLF-----LLLFLF--------LLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLF 959
                    +LLFL          +    + F +  LP   LL  +LL L LL  +  LL 
Sbjct: 118  SASSRWETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLLALLLLALIATLLT 177

Query: 960  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL----LLFLFLLLLF-- 1013
              L      + L      L       L +LL L  L      +L    LL+    ++   
Sbjct: 178  YYLY---GGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELLYSGRGVVTGA 234

Query: 1014 ------LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1067
                   +L  +L+L ++ L + +  F  +F     L  +    L++  +LL  + P  +
Sbjct: 235  GYTDVHAVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVYPALV 294

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 56.4 bits (137), Expect = 9e-08
 Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 38/300 (12%)

Query: 828  LLLFLLLLFLILPLFLLLFLFLL-LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 886
            +L+ L ++ L+L L  LL       L+     +L +F   L   + LFLL+FL       
Sbjct: 5    VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIF----- 59

Query: 887  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 946
              FLFL L LLL +   P F+ L        L  +  ++L    L L+    +L  L  L
Sbjct: 60   --FLFLFLNLLLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVLGLLAGL 117

Query: 947  LLF-----LLLFLF--------LLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLF 991
                    +LLFL          +    + F +  LP   LL  +LL L LL  +  LL 
Sbjct: 118  SASSRWETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLLALLLLALIATLLT 177

Query: 992  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL----LLFLFLLLLF-- 1045
              L      + L      L       L +LL L  L      +L    LL+    ++   
Sbjct: 178  YYLY---GGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELLYSGRGVVTGA 234

Query: 1046 ------LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1099
                   +L  +L+L ++ L + +  F  +F     L  +    L++  +LL  + P  +
Sbjct: 235  GYTDVHAVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVYPALV 294

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 56.4 bits (137), Expect = 9e-08
 Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 38/300 (12%)

Query: 860  LLLFLLLLFLILPLFLLLFLFLL-LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 918
            +L+ L ++ L+L L  LL       L+     +L +F   L   + LFLL+FL       
Sbjct: 5    VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIF----- 59

Query: 919  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 978
              FLFL L LLL +   P F+ L        L  +  ++L    L L+    +L  L  L
Sbjct: 60   --FLFLFLNLLLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVLGLLAGL 117

Query: 979  LLF-----LLLFLF--------LLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLF 1023
                    +LLFL          +    + F +  LP   LL  +LL L LL  +  LL 
Sbjct: 118  SASSRWETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLLALLLLALIATLLT 177

Query: 1024 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL----LLFLFLLLLF-- 1077
              L      + L      L       L +LL L  L      +L    LL+    ++   
Sbjct: 178  YYLY---GGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELLYSGRGVVTGA 234

Query: 1078 ------LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1131
                   +L  +L+L ++ L + +  F  +F     L  +    L++  +LL  + P  +
Sbjct: 235  GYTDVHAVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVYPALV 294

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 56.4 bits (137), Expect = 9e-08
 Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 38/300 (12%)

Query: 892  LLLFLLLLFLILPLFLLLFLFLL-LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 950
            +L+ L ++ L+L L  LL       L+     +L +F   L   + LFLL+FL       
Sbjct: 5    VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIF----- 59

Query: 951  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1010
              FLFL L LLL +   P F+ L        L  +  ++L    L L+    +L  L  L
Sbjct: 60   --FLFLFLNLLLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVLGLLAGL 117

Query: 1011 LLF-----LLLFLF--------LLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLF 1055
                    +LLFL          +    + F +  LP   LL  +LL L LL  +  LL 
Sbjct: 118  SASSRWETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLLALLLLALIATLLT 177

Query: 1056 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL----LLFLFLLLLF-- 1109
              L      + L      L       L +LL L  L      +L    LL+    ++   
Sbjct: 178  YYLY---GGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELLYSGRGVVTGA 234

Query: 1110 ------LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1163
                   +L  +L+L ++ L + +  F  +F     L  +    L++  +LL  + P  +
Sbjct: 235  GYTDVHAVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVYPALV 294

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 56.4 bits (137), Expect = 9e-08
 Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 38/300 (12%)

Query: 924  LLLFLLLLFLILPLFLLLFLFLL-LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 982
            +L+ L ++ L+L L  LL       L+     +L +F   L   + LFLL+FL       
Sbjct: 5    VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIF----- 59

Query: 983  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1042
              FLFL L LLL +   P F+ L        L  +  ++L    L L+    +L  L  L
Sbjct: 60   --FLFLFLNLLLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVLGLLAGL 117

Query: 1043 LLF-----LLLFLF--------LLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLF 1087
                    +LLFL          +    + F +  LP   LL  +LL L LL  +  LL 
Sbjct: 118  SASSRWETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLLALLLLALIATLLT 177

Query: 1088 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL----LLFLFLLLLF-- 1141
              L      + L      L       L +LL L  L      +L    LL+    ++   
Sbjct: 178  YYLY---GGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELLYSGRGVVTGA 234

Query: 1142 ------LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1195
                   +L  +L+L ++ L + +  F  +F     L  +    L++  +LL  + P  +
Sbjct: 235  GYTDVHAVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVYPALV 294

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 56.4 bits (137), Expect = 9e-08
 Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 38/300 (12%)

Query: 956  LLLFLLLLFLILPLFLLLFLFLL-LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1014
            +L+ L ++ L+L L  LL       L+     +L +F   L   + LFLL+FL       
Sbjct: 5    VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIF----- 59

Query: 1015 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1074
              FLFL L LLL +   P F+ L        L  +  ++L    L L+    +L  L  L
Sbjct: 60   --FLFLFLNLLLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVLGLLAGL 117

Query: 1075 LLF-----LLLFLF--------LLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLF 1119
                    +LLFL          +    + F +  LP   LL  +LL L LL  +  LL 
Sbjct: 118  SASSRWETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLLALLLLALIATLLT 177

Query: 1120 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL----LLFLFLLLLF-- 1173
              L      + L      L       L +LL L  L      +L    LL+    ++   
Sbjct: 178  YYLY---GGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELLYSGRGVVTGA 234

Query: 1174 ------LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1227
                   +L  +L+L ++ L + +  F  +F     L  +    L++  +LL  + P  +
Sbjct: 235  GYTDVHAVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVYPALV 294

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 56.4 bits (137), Expect = 9e-08
 Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 38/300 (12%)

Query: 988  LLLFLLLLFLILPLFLLLFLFLL-LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1046
            +L+ L ++ L+L L  LL       L+     +L +F   L   + LFLL+FL       
Sbjct: 5    VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIF----- 59

Query: 1047 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1106
              FLFL L LLL +   P F+ L        L  +  ++L    L L+    +L  L  L
Sbjct: 60   --FLFLFLNLLLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVLGLLAGL 117

Query: 1107 LLF-----LLLFLF--------LLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLF 1151
                    +LLFL          +    + F +  LP   LL  +LL L LL  +  LL 
Sbjct: 118  SASSRWETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLLALLLLALIATLLT 177

Query: 1152 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL----LLFLFLLLLF-- 1205
              L      + L      L       L +LL L  L      +L    LL+    ++   
Sbjct: 178  YYLY---GGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELLYSGRGVVTGA 234

Query: 1206 ------LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1259
                   +L  +L+L ++ L + +  F  +F     L  +    L++  +LL  + P  +
Sbjct: 235  GYTDVHAVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVYPALV 294

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 56.4 bits (137), Expect = 9e-08
 Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 38/300 (12%)

Query: 1020 LLLFLLLLFLILPLFLLLFLFLL-LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1078
            +L+ L ++ L+L L  LL       L+     +L +F   L   + LFLL+FL       
Sbjct: 5    VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIF----- 59

Query: 1079 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1138
              FLFL L LLL +   P F+ L        L  +  ++L    L L+    +L  L  L
Sbjct: 60   --FLFLFLNLLLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVLGLLAGL 117

Query: 1139 LLF-----LLLFLF--------LLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLF 1183
                    +LLFL          +    + F +  LP   LL  +LL L LL  +  LL 
Sbjct: 118  SASSRWETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLLALLLLALIATLLT 177

Query: 1184 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL----LLFLFLLLLF-- 1237
              L      + L      L       L +LL L  L      +L    LL+    ++   
Sbjct: 178  YYLY---GGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELLYSGRGVVTGA 234

Query: 1238 ------LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1291
                   +L  +L+L ++ L + +  F  +F     L  +    L++  +LL  + P  +
Sbjct: 235  GYTDVHAVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVYPALV 294

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 56.4 bits (137), Expect = 9e-08
 Identities = 73/300 (24%), Positives = 116/300 (38%), Gaps = 38/300 (12%)

Query: 1052 LLLFLLLLFLILPLFLLLFLFLL-LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1110
            +L+ L ++ L+L L  LL       L+     +L +F   L   + LFLL+FL       
Sbjct: 5    VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIF----- 59

Query: 1111 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1170
              FLFL L LLL +   P F+ L        L  +  ++L    L L+    +L  L  L
Sbjct: 60   --FLFLFLNLLLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVLGLLAGL 117

Query: 1171 LLF-----LLLFLF--------LLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLF 1215
                    +LLFL          +    + F +  LP   LL  +LL L LL  +  LL 
Sbjct: 118  SASSRWETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLLALLLLALIATLLT 177

Query: 1216 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL----LLFLFLLLLF-- 1269
              L      + L      L       L +LL L  L      +L    LL+    ++   
Sbjct: 178  YYLY---GGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELLYSGRGVVTGA 234

Query: 1270 ------LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1323
                   +L  +L+L ++ L + +  F  +F     L  +    L++  +LL  + P  +
Sbjct: 235  GYTDVHAVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVYPALV 294

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 56.3 bits (136), Expect = 9e-08
 Identities = 62/212 (29%), Positives = 82/212 (38%), Gaps = 1/212 (0%)

Query: 1129 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1188
               L   ++L       L  L+F  L  L  P     +L    L  LL+L          
Sbjct: 2    RAGLARQWVLGRPARRLLLALVFGALFALAFPPPDWWWLAWFSLAPLLWLVRGAPTSWEG 61

Query: 1189 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1248
            L    FL  F F L  F  L   L + L LL + LPL +LL    L LFLLL   L   L
Sbjct: 62   LAKSGFLFGFGFFLAGFYWLGTSLGVGLGLLAVALPLLVLLLAAWLALFLLLVAVLTCRL 121

Query: 1249 LLLFLILPLFLLLFLFLLLLFLLLFLFLLL-FLLLLFLILPLFLLLFLFLLLLFLLLFLF 1307
                L++P   +   +L    L  F +LLL +       L     L    LL FL++ + 
Sbjct: 122  WFALLVVPSAWVAAEWLRGWSLTGFPWLLLGYSQWSPSPLLQLASLGGVWLLSFLVVAVN 181

Query: 1308 LLLFLLLLFLILPLFLLLFLFLLLLFLFLLLL 1339
             LL  +LL       LLL   LL++ L     
Sbjct: 182  ALLASVLLKRATGGRLLLLGLLLVVLLAYGCA 213

Length = 518

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 58/141 (41%), Positives = 72/141 (51%)

Query: 787 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 846
           LL L L  FLL FL+LL L+L + L L L L L+  LL LFL L + L  L L +   L 
Sbjct: 1   LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 847 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 906
           L L+L+ LLL L  L    L      L  LL   L +    L L L L LLL   ++ L 
Sbjct: 61  LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 907 LLLFLFLLLLFLLLFLFLLLF 927
           L L L  L+L  L+ + LLL 
Sbjct: 121 LFLLLLALVLATLIAILLLLE 141

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 58/141 (41%), Positives = 72/141 (51%)

Query: 819 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 878
           LL L L  FLL FL+LL L+L + L L L L L+  LL LFL L + L  L L +   L 
Sbjct: 1   LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 879 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 938
           L L+L+ LLL L  L    L      L  LL   L +    L L L L LLL   ++ L 
Sbjct: 61  LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 939 LLLFLFLLLLFLLLFLFLLLF 959
           L L L  L+L  L+ + LLL 
Sbjct: 121 LFLLLLALVLATLIAILLLLE 141

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 58/141 (41%), Positives = 72/141 (51%)

Query: 851 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 910
           LL L L  FLL FL+LL L+L + L L L L L+  LL LFL L + L  L L +   L 
Sbjct: 1   LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 911 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 970
           L L+L+ LLL L  L    L      L  LL   L +    L L L L LLL   ++ L 
Sbjct: 61  LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 971 LLLFLFLLLLFLLLFLFLLLF 991
           L L L  L+L  L+ + LLL 
Sbjct: 121 LFLLLLALVLATLIAILLLLE 141

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 58/141 (41%), Positives = 72/141 (51%)

Query: 883  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 942
            LL L L  FLL FL+LL L+L + L L L L L+  LL LFL L + L  L L +   L 
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 943  LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1002
            L L+L+ LLL L  L    L      L  LL   L +    L L L L LLL   ++ L 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1003 LLLFLFLLLLFLLLFLFLLLF 1023
            L L L  L+L  L+ + LLL 
Sbjct: 121  LFLLLLALVLATLIAILLLLE 141

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 58/141 (41%), Positives = 72/141 (51%)

Query: 915  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 974
            LL L L  FLL FL+LL L+L + L L L L L+  LL LFL L + L  L L +   L 
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 975  LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1034
            L L+L+ LLL L  L    L      L  LL   L +    L L L L LLL   ++ L 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1035 LLLFLFLLLLFLLLFLFLLLF 1055
            L L L  L+L  L+ + LLL 
Sbjct: 121  LFLLLLALVLATLIAILLLLE 141

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 58/141 (41%), Positives = 72/141 (51%)

Query: 947  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1006
            LL L L  FLL FL+LL L+L + L L L L L+  LL LFL L + L  L L +   L 
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1007 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1066
            L L+L+ LLL L  L    L      L  LL   L +    L L L L LLL   ++ L 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1067 LLLFLFLLLLFLLLFLFLLLF 1087
            L L L  L+L  L+ + LLL 
Sbjct: 121  LFLLLLALVLATLIAILLLLE 141

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 58/141 (41%), Positives = 72/141 (51%)

Query: 979  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1038
            LL L L  FLL FL+LL L+L + L L L L L+  LL LFL L + L  L L +   L 
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1039 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1098
            L L+L+ LLL L  L    L      L  LL   L +    L L L L LLL   ++ L 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1099 LLLFLFLLLLFLLLFLFLLLF 1119
            L L L  L+L  L+ + LLL 
Sbjct: 121  LFLLLLALVLATLIAILLLLE 141

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 58/141 (41%), Positives = 72/141 (51%)

Query: 1011 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1070
            LL L L  FLL FL+LL L+L + L L L L L+  LL LFL L + L  L L +   L 
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1071 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1130
            L L+L+ LLL L  L    L      L  LL   L +    L L L L LLL   ++ L 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1131 LLLFLFLLLLFLLLFLFLLLF 1151
            L L L  L+L  L+ + LLL 
Sbjct: 121  LFLLLLALVLATLIAILLLLE 141

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 58/141 (41%), Positives = 72/141 (51%)

Query: 1043 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1102
            LL L L  FLL FL+LL L+L + L L L L L+  LL LFL L + L  L L +   L 
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1103 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1162
            L L+L+ LLL L  L    L      L  LL   L +    L L L L LLL   ++ L 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1163 LLLFLFLLLLFLLLFLFLLLF 1183
            L L L  L+L  L+ + LLL 
Sbjct: 121  LFLLLLALVLATLIAILLLLE 141

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 58/141 (41%), Positives = 72/141 (51%)

Query: 1075 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1134
            LL L L  FLL FL+LL L+L + L L L L L+  LL LFL L + L  L L +   L 
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1135 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1194
            L L+L+ LLL L  L    L      L  LL   L +    L L L L LLL   ++ L 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1195 LLLFLFLLLLFLLLFLFLLLF 1215
            L L L  L+L  L+ + LLL 
Sbjct: 121  LFLLLLALVLATLIAILLLLE 141

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 58/141 (41%), Positives = 72/141 (51%)

Query: 1107 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1166
            LL L L  FLL FL+LL L+L + L L L L L+  LL LFL L + L  L L +   L 
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1167 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1226
            L L+L+ LLL L  L    L      L  LL   L +    L L L L LLL   ++ L 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1227 LLLFLFLLLLFLLLFLFLLLF 1247
            L L L  L+L  L+ + LLL 
Sbjct: 121  LFLLLLALVLATLIAILLLLE 141

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 58/141 (41%), Positives = 72/141 (51%)

Query: 1139 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1198
            LL L L  FLL FL+LL L+L + L L L L L+  LL LFL L + L  L L +   L 
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1199 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1258
            L L+L+ LLL L  L    L      L  LL   L +    L L L L LLL   ++ L 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1259 LLLFLFLLLLFLLLFLFLLLF 1279
            L L L  L+L  L+ + LLL 
Sbjct: 121  LFLLLLALVLATLIAILLLLE 141

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 58/141 (41%), Positives = 72/141 (51%)

Query: 1171 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1230
            LL L L  FLL FL+LL L+L + L L L L L+  LL LFL L + L  L L +   L 
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1231 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1290
            L L+L+ LLL L  L    L      L  LL   L +    L L L L LLL   ++ L 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1291 LLLFLFLLLLFLLLFLFLLLF 1311
            L L L  L+L  L+ + LLL 
Sbjct: 121  LFLLLLALVLATLIAILLLLE 141

Length = 365

>gnl|CDD|220569 pfam10101, DUF2339, Predicted membrane protein (DUF2339)

 Score = 55.1 bits (133), Expect = 2e-07
 Identities = 104/379 (27%), Positives = 131/379 (34%), Gaps = 1/379 (0%)

Query: 749  LKVKGIKGLRVADISVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 808
            L  +    LR+   S+L  A+   + AI   L   +  L + L    LL   +     L 
Sbjct: 261  LARRARLSLRLLAYSLLALALAFVTLAIPLALSGRWTSLAWALEGAALLWLGVRQRRRLL 320

Query: 809  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 868
                L L LL L  LL L LL +L   FL   L   L    L    LL    L    L  
Sbjct: 321  RAFGLLLQLLALLSLLALLLLGYLNSAFLTGLLLWALAAAALAAAWLLLAERLSRRRLRQ 380

Query: 869  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 928
             +  LF L  L  L L L + L      L L   + +   L    +   L   L +L  L
Sbjct: 381  GLAALFALAALAALALALTMELSDAWLTLALAAQVLVLAALARRYVAPRLRWALKVLAAL 440

Query: 929  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 988
            LLL L     L      L  +LLL   L L LLL  L L    L     L    L    L
Sbjct: 441  LLLRLTALPSLQAGTHPLAHWLLLAYGLALALLLAALRLLRRDLQLRAWLEAAALHLWLL 500

Query: 989  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1048
             L +L  +L+     L   + L    LL L  L   L+          L        LL 
Sbjct: 501  -LLVLTRYLLWGGDGLAGAYSLWEAALLTLLALALALVYLYRRRARWPLVYRAAAYLLLG 559

Query: 1049 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1108
               L   L LL L  PL   +     L FL +   LLL  LLL   L    L  L   + 
Sbjct: 560  LAPLAALLALLLLENPLLSGIGGAAPLGFLPILNPLLLAYLLLAPALLALWLRRLATPIR 619

Query: 1109 FLLLFLFLLLFLLLLFLIL 1127
               L   +L+    L  + 
Sbjct: 620  LKALRPAVLVAAAALGFLW 638

This domain, found in various hypothetical bacterial proteins, has no known function. Length = 738

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 54.9 bits (133), Expect = 2e-07
 Identities = 68/295 (23%), Positives = 105/295 (35%), Gaps = 48/295 (16%)

Query: 784  FLLLLFLLLFLFLLLFLLLLFLI----------LPLFLLLFLFLLLLFLLLFLFLLLFLL 833
             L++L +++ L LL+ LL               L +F    L  + LFLL+FL   LFL 
Sbjct: 5    VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIFFLFLF 64

Query: 834  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 893
            L  L+       F+ L        L     ++L      L LL    +L L   L     
Sbjct: 65   LNLLLAYRARPPFVPLSPEQFGDPLARYRSVILP--RRRLLLLGISLVLGLLAGLSASSR 122

Query: 894  LFLLLLFL---------------------ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 932
               +LLFL                      LP   LL  +LL L LL  +  LL   L  
Sbjct: 123  WETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLLALLLLALIATLLTYYLY- 181

Query: 933  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL----LLFLFLLLLF------- 981
                + L      L       L +LL L  L      +L    LL+    ++        
Sbjct: 182  --GGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELLYSGRGVVTGAGYTDV 239

Query: 982  -LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1035
              +L  +L+L ++ L + +  F  +F     L  +    L++  +LL  + P  +
Sbjct: 240  HAVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILLGGVYPALV 294

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 55/139 (39%), Positives = 73/139 (52%)

Query: 809 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 868
           L L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2   LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 869 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 928
           +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62  ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 929 LLLFLILPLFLLLFLFLLL 947
            LL L L L  L+ + LLL
Sbjct: 122 FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 55/139 (39%), Positives = 73/139 (52%)

Query: 841 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 900
           L L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2   LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 901 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 960
           +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62  ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 961 LLLFLILPLFLLLFLFLLL 979
            LL L L L  L+ + LLL
Sbjct: 122 FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 55/139 (39%), Positives = 73/139 (52%)

Query: 873  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 932
            L L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2    LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 933  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 992
            +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62   ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 993  LLLFLILPLFLLLFLFLLL 1011
             LL L L L  L+ + LLL
Sbjct: 122  FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 55/139 (39%), Positives = 73/139 (52%)

Query: 905  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 964
            L L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2    LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 965  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1024
            +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62   ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 1025 LLLFLILPLFLLLFLFLLL 1043
             LL L L L  L+ + LLL
Sbjct: 122  FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 55/139 (39%), Positives = 73/139 (52%)

Query: 937  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 996
            L L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2    LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 997  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1056
            +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62   ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 1057 LLLFLILPLFLLLFLFLLL 1075
             LL L L L  L+ + LLL
Sbjct: 122  FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 55/139 (39%), Positives = 73/139 (52%)

Query: 969  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1028
            L L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2    LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 1029 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1088
            +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62   ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 1089 LLLFLILPLFLLLFLFLLL 1107
             LL L L L  L+ + LLL
Sbjct: 122  FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 55/139 (39%), Positives = 73/139 (52%)

Query: 1001 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1060
            L L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2    LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 1061 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1120
            +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62   ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 1121 LLLFLILPLFLLLFLFLLL 1139
             LL L L L  L+ + LLL
Sbjct: 122  FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 55/139 (39%), Positives = 73/139 (52%)

Query: 1033 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1092
            L L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2    LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 1093 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1152
            +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62   ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 1153 LLLFLILPLFLLLFLFLLL 1171
             LL L L L  L+ + LLL
Sbjct: 122  FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 55/139 (39%), Positives = 73/139 (52%)

Query: 1065 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1124
            L L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2    LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 1125 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1184
            +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62   ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 1185 LLLFLILPLFLLLFLFLLL 1203
             LL L L L  L+ + LLL
Sbjct: 122  FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 55/139 (39%), Positives = 73/139 (52%)

Query: 1097 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1156
            L L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2    LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 1157 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1216
            +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62   ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 1217 LLLFLILPLFLLLFLFLLL 1235
             LL L L L  L+ + LLL
Sbjct: 122  FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 55/139 (39%), Positives = 73/139 (52%)

Query: 1129 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1188
            L L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2    LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 1189 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1248
            +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62   ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 1249 LLLFLILPLFLLLFLFLLL 1267
             LL L L L  L+ + LLL
Sbjct: 122  FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 55/139 (39%), Positives = 73/139 (52%)

Query: 1161 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1220
            L L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2    LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 1221 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1280
            +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62   ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 1281 LLLFLILPLFLLLFLFLLL 1299
             LL L L L  L+ + LLL
Sbjct: 122  FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 55/139 (39%), Positives = 73/139 (52%)

Query: 1193 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1252
            L L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2    LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 1253 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1312
            +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62   ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 1313 LLLFLILPLFLLLFLFLLL 1331
             LL L L L  L+ + LLL
Sbjct: 122  FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 54/139 (38%), Positives = 72/139 (51%)

Query: 777 SFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 836
             L L  FLL   +LL L LL+ L L  ++  +  LL LFL L+  L  L L +   LL 
Sbjct: 2   LSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLL 61

Query: 837 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 896
           +++ + LLL L  L L  L   F +L  LL++L+      L L L LL LL    +LL L
Sbjct: 62  ILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLAL 121

Query: 897 LLLFLILPLFLLLFLFLLL 915
            LL L L L  L+ + LLL
Sbjct: 122 FLLLLALVLATLIAILLLL 140

Length = 365

>gnl|CDD|226888 COG4485, COG4485, Predicted membrane protein [Function unknown]

 Score = 55.6 bits (134), Expect = 2e-07
 Identities = 74/363 (20%), Positives = 143/363 (39%), Gaps = 41/363 (11%)

Query: 1012 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1071
            L  L+F F L   +   + LP  +   L  L  F+   +    F +LL L +  F  L  
Sbjct: 89   LMPLVFFFDLT-SMPDAIYLPTLIKFGLIGLSAFISFVVLFQKFSILLKLRISTFYALMS 147

Query: 1072 FLLLLFLLLFLFLLLFLLLLFLILPLFLLL--------FLFLLLLFLLLFLF---LLLFL 1120
            F +   L ++ +L +F+LL  +IL L  L+         + + LLF+  + F     +F+
Sbjct: 148  FGVSQ-LEIYTWLDVFILLPLIILGLERLITERKIGLYIVSISLLFIQNYYFGYMQAIFI 206

Query: 1121 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL----------- 1169
             L +L            + +       +   L    ++LP    LF              
Sbjct: 207  GLYYLFWLRERDEKKRWIDIVDFTVSSICAGLASALMVLPTVFDLFTHGEALSENDRKQT 266

Query: 1170 ---LLLFLLLFLFLLLFLLLLFLILPLFLL-LFLFLLLLFLLLFLFLLLFLLLLFLILPL 1225
                L  +    F+  +    F  +P+  + +F   L++ L     +   +  LF  L  
Sbjct: 267  ENSWLFDIPAKNFIGPYDTTKFNAIPMIYVGIFPLALIVLLFTLKSIRFRVKRLFAGLTA 326

Query: 1226 FLLLFLFLLLLFLL----------LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1275
            F ++  +   L L           L  +  +F LL+ L+    L     L   +LL  +F
Sbjct: 327  FFIISFYSQYLDLFWQGMHSPNMFLHRYAYIFSLLISLLAAETLSRLSELKKKYLLRTIF 386

Query: 1276 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLF 1335
            +++   L  L+ P +  L    ++  +LL L L+++ L L+      + + +F++++  F
Sbjct: 387  VVILGFLYILLSPHYPFL---PIVGIILLLLLLVIYKLSLWAFKKKTISILVFIIIILQF 443

Query: 1336 LLL 1338
            +L+
Sbjct: 444  VLV 446

Length = 858

>gnl|CDD|226888 COG4485, COG4485, Predicted membrane protein [Function unknown]

 Score = 54.8 bits (132), Expect = 3e-07
 Identities = 75/363 (20%), Positives = 140/363 (38%), Gaps = 20/363 (5%)

Query: 788  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 847
            L  L+F F L   +   + LP  +   L  L  F+   +    F +LL L +  F  L  
Sbjct: 89   LMPLVFFFDLT-SMPDAIYLPTLIKFGLIGLSAFISFVVLFQKFSILLKLRISTFYALMS 147

Query: 848  FLLLLFLLLFLFLLLFLLLLFLILPLFLLL--------FLFLLLLFLLLFLF---LLLFL 896
            F +   L ++ +L +F+LL  +IL L  L+         + + LLF+  + F     +F+
Sbjct: 148  FGVSQ-LEIYTWLDVFILLPLIILGLERLITERKIGLYIVSISLLFIQNYYFGYMQAIFI 206

Query: 897  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF- 955
             L +L            + +       +   L    ++LP    LF     L        
Sbjct: 207  GLYYLFWLRERDEKKRWIDIVDFTVSSICAGLASALMVLPTVFDLFTHGEALSENDRKQT 266

Query: 956  ---LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1012
                L  +     I P     F  + ++++ +F   L+ LL     +   +      L  
Sbjct: 267  ENSWLFDIPAKNFIGPYDTTKFNAIPMIYVGIFPLALIVLLFTLKSIRFRVKRLFAGLTA 326

Query: 1013 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1072
            F ++  +     L    +    + L  +  +  LL+ L     L  L  +   +LL  +F
Sbjct: 327  FFIISFYSQYLDLFWQGMHSPNMFLHRYAYIFSLLISLLAAETLSRLSELKKKYLLRTIF 386

Query: 1073 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1132
            +++L    FL++LL     FL +   +LL L L++  L L+ F    + +L  I+ +   
Sbjct: 387  VVIL---GFLYILLSPHYPFLPIVGIILLLLLLVIYKLSLWAFKKKTISILVFIIIILQF 443

Query: 1133 LFL 1135
            + +
Sbjct: 444  VLV 446

Length = 858

>gnl|CDD|226888 COG4485, COG4485, Predicted membrane protein [Function unknown]

 Score = 54.8 bits (132), Expect = 3e-07
 Identities = 75/363 (20%), Positives = 140/363 (38%), Gaps = 20/363 (5%)

Query: 820  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 879
            L  L+F F L   +   + LP  +   L  L  F+   +    F +LL L +  F  L  
Sbjct: 89   LMPLVFFFDLT-SMPDAIYLPTLIKFGLIGLSAFISFVVLFQKFSILLKLRISTFYALMS 147

Query: 880  FLLLLFLLLFLFLLLFLLLLFLILPLFLLL--------FLFLLLLFLLLFLF---LLLFL 928
            F +   L ++ +L +F+LL  +IL L  L+         + + LLF+  + F     +F+
Sbjct: 148  FGVSQ-LEIYTWLDVFILLPLIILGLERLITERKIGLYIVSISLLFIQNYYFGYMQAIFI 206

Query: 929  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF- 987
             L +L            + +       +   L    ++LP    LF     L        
Sbjct: 207  GLYYLFWLRERDEKKRWIDIVDFTVSSICAGLASALMVLPTVFDLFTHGEALSENDRKQT 266

Query: 988  ---LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1044
                L  +     I P     F  + ++++ +F   L+ LL     +   +      L  
Sbjct: 267  ENSWLFDIPAKNFIGPYDTTKFNAIPMIYVGIFPLALIVLLFTLKSIRFRVKRLFAGLTA 326

Query: 1045 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1104
            F ++  +     L    +    + L  +  +  LL+ L     L  L  +   +LL  +F
Sbjct: 327  FFIISFYSQYLDLFWQGMHSPNMFLHRYAYIFSLLISLLAAETLSRLSELKKKYLLRTIF 386

Query: 1105 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1164
            +++L    FL++LL     FL +   +LL L L++  L L+ F    + +L  I+ +   
Sbjct: 387  VVIL---GFLYILLSPHYPFLPIVGIILLLLLLVIYKLSLWAFKKKTISILVFIIIILQF 443

Query: 1165 LFL 1167
            + +
Sbjct: 444  VLV 446

Length = 858

>gnl|CDD|226888 COG4485, COG4485, Predicted membrane protein [Function unknown]

 Score = 54.8 bits (132), Expect = 3e-07
 Identities = 75/363 (20%), Positives = 140/363 (38%), Gaps = 20/363 (5%)

Query: 852  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 911
            L  L+F F L   +   + LP  +   L  L  F+   +    F +LL L +  F  L  
Sbjct: 89   LMPLVFFFDLT-SMPDAIYLPTLIKFGLIGLSAFISFVVLFQKFSILLKLRISTFYALMS 147

Query: 912  FLLLLFLLLFLFLLLFLLLLFLILPLFLLL--------FLFLLLLFLLLFLF---LLLFL 960
            F +   L ++ +L +F+LL  +IL L  L+         + + LLF+  + F     +F+
Sbjct: 148  FGVSQ-LEIYTWLDVFILLPLIILGLERLITERKIGLYIVSISLLFIQNYYFGYMQAIFI 206

Query: 961  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF- 1019
             L +L            + +       +   L    ++LP    LF     L        
Sbjct: 207  GLYYLFWLRERDEKKRWIDIVDFTVSSICAGLASALMVLPTVFDLFTHGEALSENDRKQT 266

Query: 1020 ---LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1076
                L  +     I P     F  + ++++ +F   L+ LL     +   +      L  
Sbjct: 267  ENSWLFDIPAKNFIGPYDTTKFNAIPMIYVGIFPLALIVLLFTLKSIRFRVKRLFAGLTA 326

Query: 1077 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1136
            F ++  +     L    +    + L  +  +  LL+ L     L  L  +   +LL  +F
Sbjct: 327  FFIISFYSQYLDLFWQGMHSPNMFLHRYAYIFSLLISLLAAETLSRLSELKKKYLLRTIF 386

Query: 1137 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1196
            +++L    FL++LL     FL +   +LL L L++  L L+ F    + +L  I+ +   
Sbjct: 387  VVIL---GFLYILLSPHYPFLPIVGIILLLLLLVIYKLSLWAFKKKTISILVFIIIILQF 443

Query: 1197 LFL 1199
            + +
Sbjct: 444  VLV 446

Length = 858

>gnl|CDD|226888 COG4485, COG4485, Predicted membrane protein [Function unknown]

 Score = 54.8 bits (132), Expect = 3e-07
 Identities = 75/363 (20%), Positives = 140/363 (38%), Gaps = 20/363 (5%)

Query: 884  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 943
            L  L+F F L   +   + LP  +   L  L  F+   +    F +LL L +  F  L  
Sbjct: 89   LMPLVFFFDLT-SMPDAIYLPTLIKFGLIGLSAFISFVVLFQKFSILLKLRISTFYALMS 147

Query: 944  FLLLLFLLLFLFLLLFLLLLFLILPLFLLL--------FLFLLLLFLLLFLF---LLLFL 992
            F +   L ++ +L +F+LL  +IL L  L+         + + LLF+  + F     +F+
Sbjct: 148  FGVSQ-LEIYTWLDVFILLPLIILGLERLITERKIGLYIVSISLLFIQNYYFGYMQAIFI 206

Query: 993  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF- 1051
             L +L            + +       +   L    ++LP    LF     L        
Sbjct: 207  GLYYLFWLRERDEKKRWIDIVDFTVSSICAGLASALMVLPTVFDLFTHGEALSENDRKQT 266

Query: 1052 ---LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1108
                L  +     I P     F  + ++++ +F   L+ LL     +   +      L  
Sbjct: 267  ENSWLFDIPAKNFIGPYDTTKFNAIPMIYVGIFPLALIVLLFTLKSIRFRVKRLFAGLTA 326

Query: 1109 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1168
            F ++  +     L    +    + L  +  +  LL+ L     L  L  +   +LL  +F
Sbjct: 327  FFIISFYSQYLDLFWQGMHSPNMFLHRYAYIFSLLISLLAAETLSRLSELKKKYLLRTIF 386

Query: 1169 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1228
            +++L    FL++LL     FL +   +LL L L++  L L+ F    + +L  I+ +   
Sbjct: 387  VVIL---GFLYILLSPHYPFLPIVGIILLLLLLVIYKLSLWAFKKKTISILVFIIIILQF 443

Query: 1229 LFL 1231
            + +
Sbjct: 444  VLV 446

Length = 858

>gnl|CDD|226888 COG4485, COG4485, Predicted membrane protein [Function unknown]

 Score = 54.8 bits (132), Expect = 3e-07
 Identities = 75/363 (20%), Positives = 140/363 (38%), Gaps = 20/363 (5%)

Query: 916  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 975
            L  L+F F L   +   + LP  +   L  L  F+   +    F +LL L +  F  L  
Sbjct: 89   LMPLVFFFDLT-SMPDAIYLPTLIKFGLIGLSAFISFVVLFQKFSILLKLRISTFYALMS 147

Query: 976  FLLLLFLLLFLFLLLFLLLLFLILPLFLLL--------FLFLLLLFLLLFLF---LLLFL 1024
            F +   L ++ +L +F+LL  +IL L  L+         + + LLF+  + F     +F+
Sbjct: 148  FGVSQ-LEIYTWLDVFILLPLIILGLERLITERKIGLYIVSISLLFIQNYYFGYMQAIFI 206

Query: 1025 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF- 1083
             L +L            + +       +   L    ++LP    LF     L        
Sbjct: 207  GLYYLFWLRERDEKKRWIDIVDFTVSSICAGLASALMVLPTVFDLFTHGEALSENDRKQT 266

Query: 1084 ---LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1140
                L  +     I P     F  + ++++ +F   L+ LL     +   +      L  
Sbjct: 267  ENSWLFDIPAKNFIGPYDTTKFNAIPMIYVGIFPLALIVLLFTLKSIRFRVKRLFAGLTA 326

Query: 1141 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1200
            F ++  +     L    +    + L  +  +  LL+ L     L  L  +   +LL  +F
Sbjct: 327  FFIISFYSQYLDLFWQGMHSPNMFLHRYAYIFSLLISLLAAETLSRLSELKKKYLLRTIF 386

Query: 1201 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1260
            +++L    FL++LL     FL +   +LL L L++  L L+ F    + +L  I+ +   
Sbjct: 387  VVIL---GFLYILLSPHYPFLPIVGIILLLLLLVIYKLSLWAFKKKTISILVFIIIILQF 443

Query: 1261 LFL 1263
            + +
Sbjct: 444  VLV 446

Length = 858

>gnl|CDD|226888 COG4485, COG4485, Predicted membrane protein [Function unknown]

 Score = 54.8 bits (132), Expect = 3e-07
 Identities = 75/363 (20%), Positives = 140/363 (38%), Gaps = 20/363 (5%)

Query: 948  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1007
            L  L+F F L   +   + LP  +   L  L  F+   +    F +LL L +  F  L  
Sbjct: 89   LMPLVFFFDLT-SMPDAIYLPTLIKFGLIGLSAFISFVVLFQKFSILLKLRISTFYALMS 147

Query: 1008 FLLLLFLLLFLFLLLFLLLLFLILPLFLLL--------FLFLLLLFLLLFLF---LLLFL 1056
            F +   L ++ +L +F+LL  +IL L  L+         + + LLF+  + F     +F+
Sbjct: 148  FGVSQ-LEIYTWLDVFILLPLIILGLERLITERKIGLYIVSISLLFIQNYYFGYMQAIFI 206

Query: 1057 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF- 1115
             L +L            + +       +   L    ++LP    LF     L        
Sbjct: 207  GLYYLFWLRERDEKKRWIDIVDFTVSSICAGLASALMVLPTVFDLFTHGEALSENDRKQT 266

Query: 1116 ---LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1172
                L  +     I P     F  + ++++ +F   L+ LL     +   +      L  
Sbjct: 267  ENSWLFDIPAKNFIGPYDTTKFNAIPMIYVGIFPLALIVLLFTLKSIRFRVKRLFAGLTA 326

Query: 1173 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1232
            F ++  +     L    +    + L  +  +  LL+ L     L  L  +   +LL  +F
Sbjct: 327  FFIISFYSQYLDLFWQGMHSPNMFLHRYAYIFSLLISLLAAETLSRLSELKKKYLLRTIF 386

Query: 1233 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1292
            +++L    FL++LL     FL +   +LL L L++  L L+ F    + +L  I+ +   
Sbjct: 387  VVIL---GFLYILLSPHYPFLPIVGIILLLLLLVIYKLSLWAFKKKTISILVFIIIILQF 443

Query: 1293 LFL 1295
            + +
Sbjct: 444  VLV 446

Length = 858

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 54.7 bits (132), Expect = 3e-07
 Identities = 63/276 (22%), Positives = 105/276 (38%), Gaps = 16/276 (5%)

Query: 1048 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1107
            L +FL L +L  +L+        +   +L  L    + L      + L +  LLF+  LL
Sbjct: 152  LAIFLPLLVLFFWLLAIKTGSNRIIYAVLAGLPLFLMALAWGGYQVFLLILALLFILALL 211

Query: 1108 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1167
            +       L              +L+    L+  ++  +   LF+    +     +  FL
Sbjct: 212  IMGRFEPKL-------------LILVGFSYLIATIVGGIIQYLFVGFAKVRSSEHMGAFL 258

Query: 1168 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1227
               L  LL F  ++  + L F          LFL+L  +   LFLL  L   F+ L    
Sbjct: 259  VFGLAQLLAFGSVVKGVYLSFYQFETLTYPGLFLVLGLIGPVLFLLGLLG--FIALWTGR 316

Query: 1228 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL-FLLLLFLI 1286
               LF      +  + L+       L   L  L FL       L+F  LLL  L +   I
Sbjct: 317  FYSLFDYAKIDIPTIILISEWQPTGLYALLAGLRFLIFTFPLGLIFCGLLLEDLAVFSFI 376

Query: 1287 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1322
              +  L FL +++  ++L L  ++ L+  +L  P+F
Sbjct: 377  YSVSQLRFLGVMVFPIMLTLAPVIALIAAYLASPIF 412

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 11/152 (7%)

Query: 1201 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1260
            L LL LLL L   L++++        L+L+ F L+L +++ +  +    LL  +  L LL
Sbjct: 27   LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLGALCLL 86

Query: 1261 LFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLFLL 1309
            L +  LLL  L       L+L ++LF+    L+L L++ L   L  L    + LL  FL 
Sbjct: 87   LLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLA 146

Query: 1310 LFLLLLFLILPLFLLLFLFLLLLFLFLLLLFL 1341
             FL ++ LI+ L+L    + LL+ L  LLLFL
Sbjct: 147  FFLAIILLIIALYLQQNWWTLLVDLLWLLLFL 178

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 785 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 844
           L LL LLL L   L++++        L+L+ F L+L +++ +  +    LL  +  L LL
Sbjct: 27  LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLGALCLL 86

Query: 845 LFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLFLL 893
           L +  LLL  L       L+L ++LF+    L+L L++ L   L  L    + LL  FL 
Sbjct: 87  LLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLA 146

Query: 894 LFLLLLFLILPLFL---LLFLFLLLLFLLLFLFLLLFL 928
            FL ++ LI+ L+L      L + LL+LLLFL +L+++
Sbjct: 147 FFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWM 184

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 817 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 876
           L LL LLL L   L++++        L+L+ F L+L +++ +  +    LL  +  L LL
Sbjct: 27  LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLGALCLL 86

Query: 877 LFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLFLL 925
           L +  LLL  L       L+L ++LF+    L+L L++ L   L  L    + LL  FL 
Sbjct: 87  LLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLA 146

Query: 926 LFLLLLFLILPLFL---LLFLFLLLLFLLLFLFLLLFL 960
            FL ++ LI+ L+L      L + LL+LLLFL +L+++
Sbjct: 147 FFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWM 184

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 849 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 908
           L LL LLL L   L++++        L+L+ F L+L +++ +  +    LL  +  L LL
Sbjct: 27  LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLGALCLL 86

Query: 909 LFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLFLL 957
           L +  LLL  L       L+L ++LF+    L+L L++ L   L  L    + LL  FL 
Sbjct: 87  LLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLA 146

Query: 958 LFLLLLFLILPLFL---LLFLFLLLLFLLLFLFLLLFL 992
            FL ++ LI+ L+L      L + LL+LLLFL +L+++
Sbjct: 147 FFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWM 184

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 881  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 940
            L LL LLL L   L++++        L+L+ F L+L +++ +  +    LL  +  L LL
Sbjct: 27   LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLGALCLL 86

Query: 941  LFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLFLL 989
            L +  LLL  L       L+L ++LF+    L+L L++ L   L  L    + LL  FL 
Sbjct: 87   LLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLA 146

Query: 990  LFLLLLFLILPLFL---LLFLFLLLLFLLLFLFLLLFL 1024
             FL ++ LI+ L+L      L + LL+LLLFL +L+++
Sbjct: 147  FFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWM 184

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 913  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 972
            L LL LLL L   L++++        L+L+ F L+L +++ +  +    LL  +  L LL
Sbjct: 27   LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLGALCLL 86

Query: 973  LFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLFLL 1021
            L +  LLL  L       L+L ++LF+    L+L L++ L   L  L    + LL  FL 
Sbjct: 87   LLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLA 146

Query: 1022 LFLLLLFLILPLFL---LLFLFLLLLFLLLFLFLLLFL 1056
             FL ++ LI+ L+L      L + LL+LLLFL +L+++
Sbjct: 147  FFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWM 184

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 945  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1004
            L LL LLL L   L++++        L+L+ F L+L +++ +  +    LL  +  L LL
Sbjct: 27   LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLGALCLL 86

Query: 1005 LFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLFLL 1053
            L +  LLL  L       L+L ++LF+    L+L L++ L   L  L    + LL  FL 
Sbjct: 87   LLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLA 146

Query: 1054 LFLLLLFLILPLFL---LLFLFLLLLFLLLFLFLLLFL 1088
             FL ++ LI+ L+L      L + LL+LLLFL +L+++
Sbjct: 147  FFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWM 184

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 977  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1036
            L LL LLL L   L++++        L+L+ F L+L +++ +  +    LL  +  L LL
Sbjct: 27   LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLGALCLL 86

Query: 1037 LFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLFLL 1085
            L +  LLL  L       L+L ++LF+    L+L L++ L   L  L    + LL  FL 
Sbjct: 87   LLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLA 146

Query: 1086 LFLLLLFLILPLFL---LLFLFLLLLFLLLFLFLLLFL 1120
             FL ++ LI+ L+L      L + LL+LLLFL +L+++
Sbjct: 147  FFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWM 184

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 1009 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1068
            L LL LLL L   L++++        L+L+ F L+L +++ +  +    LL  +  L LL
Sbjct: 27   LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLGALCLL 86

Query: 1069 LFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLFLL 1117
            L +  LLL  L       L+L ++LF+    L+L L++ L   L  L    + LL  FL 
Sbjct: 87   LLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLA 146

Query: 1118 LFLLLLFLILPLFL---LLFLFLLLLFLLLFLFLLLFL 1152
             FL ++ LI+ L+L      L + LL+LLLFL +L+++
Sbjct: 147  FFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWM 184

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 1041 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1100
            L LL LLL L   L++++        L+L+ F L+L +++ +  +    LL  +  L LL
Sbjct: 27   LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLGALCLL 86

Query: 1101 LFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLFLL 1149
            L +  LLL  L       L+L ++LF+    L+L L++ L   L  L    + LL  FL 
Sbjct: 87   LLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLA 146

Query: 1150 LFLLLLFLILPLFL---LLFLFLLLLFLLLFLFLLLFL 1184
             FL ++ LI+ L+L      L + LL+LLLFL +L+++
Sbjct: 147  FFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWM 184

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 1073 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1132
            L LL LLL L   L++++        L+L+ F L+L +++ +  +    LL  +  L LL
Sbjct: 27   LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLGALCLL 86

Query: 1133 LFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLFLL 1181
            L +  LLL  L       L+L ++LF+    L+L L++ L   L  L    + LL  FL 
Sbjct: 87   LLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLA 146

Query: 1182 LFLLLLFLILPLFL---LLFLFLLLLFLLLFLFLLLFL 1216
             FL ++ LI+ L+L      L + LL+LLLFL +L+++
Sbjct: 147  FFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWM 184

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 1105 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1164
            L LL LLL L   L++++        L+L+ F L+L +++ +  +    LL  +  L LL
Sbjct: 27   LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLGALCLL 86

Query: 1165 LFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLFLL 1213
            L +  LLL  L       L+L ++LF+    L+L L++ L   L  L    + LL  FL 
Sbjct: 87   LLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLA 146

Query: 1214 LFLLLLFLILPLFL---LLFLFLLLLFLLLFLFLLLFL 1248
             FL ++ LI+ L+L      L + LL+LLLFL +L+++
Sbjct: 147  FFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWM 184

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 3e-07
 Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 1137 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1196
            L LL LLL L   L++++        L+L+ F L+L +++ +  +    LL  +  L LL
Sbjct: 27   LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLGALCLL 86

Query: 1197 LFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL----FLLLFLFLL 1245
            L +  LLL  L       L+L ++LF+    L+L L++ L   L  L    + LL  FL 
Sbjct: 87   LLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLA 146

Query: 1246 LFLLLLFLILPLFL---LLFLFLLLLFLLLFLFLLLFL 1280
             FL ++ LI+ L+L      L + LL+LLLFL +L+++
Sbjct: 147  FFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWM 184

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]

 Score = 54.0 bits (130), Expect = 4e-07
 Identities = 87/280 (31%), Positives = 105/280 (37%), Gaps = 10/280 (3%)

Query: 768  AIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 827
              +T+      L L L LLLL   L   L    L L L+L L  +L   L +       F
Sbjct: 174  GFLTKGPGALLLPLILLLLLLAPRLRRLLRDLRLWLGLLLGLLPVLPWLLAIQAQFAPYF 233

Query: 828  LLLFLLLLFLILPLFL---------LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 878
              LFL   +      +          L+L+LL+L L +  +LLL    L L       L 
Sbjct: 234  GHLFLTFGWEEDFQRVASGDEHHSGPLWLYLLVLLLGVIPWLLLLPGALRLRWAKRGKLA 293

Query: 879  LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 938
            + LL L L L L LL F L    + P  L  +  L  L  L +L L   LLL  L     
Sbjct: 294  VALLFLLLWLLLPLLFFSLAAGKLPPYILPAYPALAALAGLGWLLLAALLLLYSLRRLGL 353

Query: 939  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL-FLLLFLLLLFL 997
            L L L L     L  LFLL    L    L L   +   L  L L L     LL   LL  
Sbjct: 354  LALILGLTAAVALALLFLLGPANLPPKGLILLFAVLAVLAALALWLVAARRLLRNKLLVW 413

Query: 998  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1037
               L L L   LL    LL   L    L L   LP  + L
Sbjct: 414  AGALLLPLLWALLGGLYLLNRALPETGLPLAQKLPKGVSL 453

Length = 535

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 58/144 (40%), Positives = 74/144 (51%), Gaps = 2/144 (1%)

Query: 1203 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1262
            LL L L  FLL FL+LL L+  L +LL L L+L  +   L L L L++    L L +L F
Sbjct: 1    LLSLKLARFLLWFLILLLLL--LLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGF 58

Query: 1263 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1322
            L L+L+ +LL L L    L    +    L+  L  LL      L L+LFLLLL  I  + 
Sbjct: 59   LLLILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALIL 118

Query: 1323 LLLFLFLLLLFLFLLLLFLLSSFS 1346
            L LFL LL L L  L+  LL    
Sbjct: 119  LALFLLLLALVLATLIAILLLLEG 142

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query: 803 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 862
            FL+  L LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L
Sbjct: 8   RFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVL 67

Query: 863 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 922
            LL+L  +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL  
Sbjct: 68  LLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLA 127

Query: 923 FLLLFLLLLFLIL 935
            +L  L+ + L+L
Sbjct: 128 LVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query: 835 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 894
            FL+  L LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L
Sbjct: 8   RFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVL 67

Query: 895 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 954
            LL+L  +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL  
Sbjct: 68  LLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLA 127

Query: 955 FLLLFLLLLFLIL 967
            +L  L+ + L+L
Sbjct: 128 LVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query: 867 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 926
            FL+  L LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L
Sbjct: 8   RFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVL 67

Query: 927 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 986
            LL+L  +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL  
Sbjct: 68  LLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLA 127

Query: 987 FLLLFLLLLFLIL 999
            +L  L+ + L+L
Sbjct: 128 LVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query: 899  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 958
             FL+  L LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L
Sbjct: 8    RFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVL 67

Query: 959  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1018
             LL+L  +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL  
Sbjct: 68   LLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLA 127

Query: 1019 FLLLFLLLLFLIL 1031
             +L  L+ + L+L
Sbjct: 128  LVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query: 931  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 990
             FL+  L LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L
Sbjct: 8    RFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVL 67

Query: 991  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1050
             LL+L  +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL  
Sbjct: 68   LLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLA 127

Query: 1051 FLLLFLLLLFLIL 1063
             +L  L+ + L+L
Sbjct: 128  LVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query: 963  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1022
             FL+  L LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L
Sbjct: 8    RFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVL 67

Query: 1023 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1082
             LL+L  +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL  
Sbjct: 68   LLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLA 127

Query: 1083 FLLLFLLLLFLIL 1095
             +L  L+ + L+L
Sbjct: 128  LVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query: 995  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1054
             FL+  L LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L
Sbjct: 8    RFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVL 67

Query: 1055 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1114
             LL+L  +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL  
Sbjct: 68   LLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLA 127

Query: 1115 FLLLFLLLLFLIL 1127
             +L  L+ + L+L
Sbjct: 128  LVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query: 1027 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1086
             FL+  L LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L
Sbjct: 8    RFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVL 67

Query: 1087 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1146
             LL+L  +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL  
Sbjct: 68   LLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLA 127

Query: 1147 FLLLFLLLLFLIL 1159
             +L  L+ + L+L
Sbjct: 128  LVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query: 1059 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1118
             FL+  L LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L
Sbjct: 8    RFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVL 67

Query: 1119 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1178
             LL+L  +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL  
Sbjct: 68   LLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLA 127

Query: 1179 FLLLFLLLLFLIL 1191
             +L  L+ + L+L
Sbjct: 128  LVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query: 1091 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1150
             FL+  L LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L
Sbjct: 8    RFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVL 67

Query: 1151 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1210
             LL+L  +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL  
Sbjct: 68   LLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLA 127

Query: 1211 FLLLFLLLLFLIL 1223
             +L  L+ + L+L
Sbjct: 128  LVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query: 1123 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1182
             FL+  L LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L
Sbjct: 8    RFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVL 67

Query: 1183 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1242
             LL+L  +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL  
Sbjct: 68   LLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLA 127

Query: 1243 FLLLFLLLLFLIL 1255
             +L  L+ + L+L
Sbjct: 128  LVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query: 1155 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1214
             FL+  L LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L
Sbjct: 8    RFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVL 67

Query: 1215 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1274
             LL+L  +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL  
Sbjct: 68   LLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLA 127

Query: 1275 FLLLFLLLLFLIL 1287
             +L  L+ + L+L
Sbjct: 128  LVLATLIAILLLL 140

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 57/133 (42%), Positives = 75/133 (56%)

Query: 1187 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1246
             FL+  L LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L
Sbjct: 8    RFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVL 67

Query: 1247 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1306
             LL+L  +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL  
Sbjct: 68   LLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLA 127

Query: 1307 FLLLFLLLLFLIL 1319
             +L  L+ + L+L
Sbjct: 128  LVLATLIAILLLL 140

Length = 365

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 53.9 bits (129), Expect = 4e-07
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 15/171 (8%)

Query: 1169 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1228
            L LL LLL L   L++++        L+L+ F L+L +++   L++F+    L+ PL  L
Sbjct: 27   LALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIII---LIIFIFRRDLLCPLGAL 83

Query: 1229 LFLFLLLLFLLLFLFLL----LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1284
              L L++  LL+ L+ L    L+L ++  I    L+L L++ LL +L  L   ++ LL F
Sbjct: 84   CLLLLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAF 143

Query: 1285 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLF 1335
                 FL  FL ++LL + L+L    + LL+ L   L+LLLFL +L+   +
Sbjct: 144  -----FLAFFLAIILLIIALYLQQNWWTLLVDL---LWLLLFLAILIWMYY 186

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 53.6 bits (129), Expect = 5e-07
 Identities = 122/399 (30%), Positives = 168/399 (42%), Gaps = 2/399 (0%)

Query: 795  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 854
            +LLL LL + L+L L L+L L LLL+  LL     +  LLL ++    LLL L  +L  L
Sbjct: 80   YLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALLLRILSLALLLLPLSSVLRGL 139

Query: 855  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 914
                     L L  +     L     LL   L L ++ L+   ++ L++ L LL      
Sbjct: 140  FQGFGRFGPLALSIVSSIFLLAAVFALLFAALGLAVWALVLGAVVSLLVLLILLGKKKRG 199

Query: 915  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 974
            L   +L   L L   LL   LPL L   L  L   +   L  L        I      L 
Sbjct: 200  LKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLV 259

Query: 975  LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1034
              LL++   L   L   L   +       L  L    L LLL + +   L LL L  P+ 
Sbjct: 260  SLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPII 319

Query: 1035 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF--LLLLFLLLFLFLLLFLLLLF 1092
             LLF         +   L L  L L L+     LL       LL L+  +  LL L+L  
Sbjct: 320  TLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNL 379

Query: 1093 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1152
            L++P F L+   +    ++    LL ++L L L+   F    L  L    LL L +L  L
Sbjct: 380  LLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKFSYFLLLKLAALALLLLAILGLL 439

Query: 1153 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1191
             LL  +L L L+L    +LLFLLL L  L+ +LLL L+L
Sbjct: 440  ELLVALLLLLLVLLALGILLFLLLLLIALVLILLLRLLL 478

Length = 480

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 53.6 bits (129), Expect = 5e-07
 Identities = 122/399 (30%), Positives = 168/399 (42%), Gaps = 2/399 (0%)

Query: 827  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 886
            +LLL LL + L+L L L+L L LLL+  LL     +  LLL ++    LLL L  +L  L
Sbjct: 80   YLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALLLRILSLALLLLPLSSVLRGL 139

Query: 887  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 946
                     L L  +     L     LL   L L ++ L+   ++ L++ L LL      
Sbjct: 140  FQGFGRFGPLALSIVSSIFLLAAVFALLFAALGLAVWALVLGAVVSLLVLLILLGKKKRG 199

Query: 947  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1006
            L   +L   L L   LL   LPL L   L  L   +   L  L        I      L 
Sbjct: 200  LKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLV 259

Query: 1007 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1066
              LL++   L   L   L   +       L  L    L LLL + +   L LL L  P+ 
Sbjct: 260  SLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPII 319

Query: 1067 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF--LLLLFLLLFLFLLLFLLLLF 1124
             LLF         +   L L  L L L+     LL       LL L+  +  LL L+L  
Sbjct: 320  TLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNL 379

Query: 1125 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1184
            L++P F L+   +    ++    LL ++L L L+   F    L  L    LL L +L  L
Sbjct: 380  LLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKFSYFLLLKLAALALLLLAILGLL 439

Query: 1185 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1223
             LL  +L L L+L    +LLFLLL L  L+ +LLL L+L
Sbjct: 440  ELLVALLLLLLVLLALGILLFLLLLLIALVLILLLRLLL 478

Length = 480

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 53.6 bits (129), Expect = 5e-07
 Identities = 122/399 (30%), Positives = 168/399 (42%), Gaps = 2/399 (0%)

Query: 859  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 918
            +LLL LL + L+L L L+L L LLL+  LL     +  LLL ++    LLL L  +L  L
Sbjct: 80   YLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALLLRILSLALLLLPLSSVLRGL 139

Query: 919  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 978
                     L L  +     L     LL   L L ++ L+   ++ L++ L LL      
Sbjct: 140  FQGFGRFGPLALSIVSSIFLLAAVFALLFAALGLAVWALVLGAVVSLLVLLILLGKKKRG 199

Query: 979  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1038
            L   +L   L L   LL   LPL L   L  L   +   L  L        I      L 
Sbjct: 200  LKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLV 259

Query: 1039 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1098
              LL++   L   L   L   +       L  L    L LLL + +   L LL L  P+ 
Sbjct: 260  SLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPII 319

Query: 1099 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF--LLLLFLLLFLFLLLFLLLLF 1156
             LLF         +   L L  L L L+     LL       LL L+  +  LL L+L  
Sbjct: 320  TLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNL 379

Query: 1157 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1216
            L++P F L+   +    ++    LL ++L L L+   F    L  L    LL L +L  L
Sbjct: 380  LLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKFSYFLLLKLAALALLLLAILGLL 439

Query: 1217 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1255
             LL  +L L L+L    +LLFLLL L  L+ +LLL L+L
Sbjct: 440  ELLVALLLLLLVLLALGILLFLLLLLIALVLILLLRLLL 478

Length = 480

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 53.6 bits (129), Expect = 5e-07
 Identities = 122/399 (30%), Positives = 168/399 (42%), Gaps = 2/399 (0%)

Query: 891  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 950
            +LLL LL + L+L L L+L L LLL+  LL     +  LLL ++    LLL L  +L  L
Sbjct: 80   YLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALLLRILSLALLLLPLSSVLRGL 139

Query: 951  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1010
                     L L  +     L     LL   L L ++ L+   ++ L++ L LL      
Sbjct: 140  FQGFGRFGPLALSIVSSIFLLAAVFALLFAALGLAVWALVLGAVVSLLVLLILLGKKKRG 199

Query: 1011 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1070
            L   +L   L L   LL   LPL L   L  L   +   L  L        I      L 
Sbjct: 200  LKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLV 259

Query: 1071 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1130
              LL++   L   L   L   +       L  L    L LLL + +   L LL L  P+ 
Sbjct: 260  SLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPII 319

Query: 1131 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF--LLLLFLLLFLFLLLFLLLLF 1188
             LLF         +   L L  L L L+     LL       LL L+  +  LL L+L  
Sbjct: 320  TLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNL 379

Query: 1189 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1248
            L++P F L+   +    ++    LL ++L L L+   F    L  L    LL L +L  L
Sbjct: 380  LLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKFSYFLLLKLAALALLLLAILGLL 439

Query: 1249 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1287
             LL  +L L L+L    +LLFLLL L  L+ +LLL L+L
Sbjct: 440  ELLVALLLLLLVLLALGILLFLLLLLIALVLILLLRLLL 478

Length = 480

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 53.6 bits (129), Expect = 5e-07
 Identities = 122/399 (30%), Positives = 168/399 (42%), Gaps = 2/399 (0%)

Query: 923  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 982
            +LLL LL + L+L L L+L L LLL+  LL     +  LLL ++    LLL L  +L  L
Sbjct: 80   YLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALLLRILSLALLLLPLSSVLRGL 139

Query: 983  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1042
                     L L  +     L     LL   L L ++ L+   ++ L++ L LL      
Sbjct: 140  FQGFGRFGPLALSIVSSIFLLAAVFALLFAALGLAVWALVLGAVVSLLVLLILLGKKKRG 199

Query: 1043 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1102
            L   +L   L L   LL   LPL L   L  L   +   L  L        I      L 
Sbjct: 200  LKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLV 259

Query: 1103 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1162
              LL++   L   L   L   +       L  L    L LLL + +   L LL L  P+ 
Sbjct: 260  SLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPII 319

Query: 1163 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF--LLLLFLLLFLFLLLFLLLLF 1220
             LLF         +   L L  L L L+     LL       LL L+  +  LL L+L  
Sbjct: 320  TLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNL 379

Query: 1221 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1280
            L++P F L+   +    ++    LL ++L L L+   F    L  L    LL L +L  L
Sbjct: 380  LLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKFSYFLLLKLAALALLLLAILGLL 439

Query: 1281 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1319
             LL  +L L L+L    +LLFLLL L  L+ +LLL L+L
Sbjct: 440  ELLVALLLLLLVLLALGILLFLLLLLIALVLILLLRLLL 478

Length = 480

>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 91/276 (32%), Positives = 119/276 (43%)

Query: 1098 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1157
            FL+  L  L +  L+FLF+ L  L       L L   L  LLL LLLFL +   LLL  L
Sbjct: 12   FLIPKLGALWIAALVFLFISLAFLAGLGSTILILAALLLALLLLLLLFLPVAFKLLLSLL 71

Query: 1158 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1217
             L LFL L L LLL  L   L     +LLL  IL L L   L L +    L L   + LL
Sbjct: 72   NLLLFLRLLLLLLLWLLFSSLSAGAPILLLATILLLLLTARLLLFISLFALLLNGRILLL 131

Query: 1218 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1277
            +L   + L LLL L L            L+ +L       +    +   LLF  L L++L
Sbjct: 132  VLLGSVLLGLLLALGLAGAGAEELALANLWRVLGVYAFKNYAGSLMAAALLFPALLLWIL 191

Query: 1278 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLL 1337
               LL  L+  L LL+ L L     L  L  L+ LL LFL+L L   + L  LL  L  L
Sbjct: 192  GSWLLGTLLAALALLIALLLTGSRSLAALLALILLLALFLVLLLLRRVLLLGLLAALLAL 251

Query: 1338 LLFLLSSFSSSSSSSFSYSSSSSSSSFSPLSPLFDF 1373
            +L  L             +   + SS +    +++ 
Sbjct: 252  ILIALVGIELFEPLELLLARLGTDSSLTGRLDIWEA 287

Length = 424

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 62/145 (42%), Positives = 80/145 (55%)

Query: 802 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 861
           LL L L  FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLL
Sbjct: 1   LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 862 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 921
           L L+L+ L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL 
Sbjct: 61  LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 922 LFLLLFLLLLFLILPLFLLLFLFLL 946
           LFLLL  L+L  ++ + LLL   + 
Sbjct: 121 LFLLLLALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 62/145 (42%), Positives = 80/145 (55%)

Query: 834 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 893
           LL L L  FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLL
Sbjct: 1   LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 894 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 953
           L L+L+ L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL 
Sbjct: 61  LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 954 LFLLLFLLLLFLILPLFLLLFLFLL 978
           LFLLL  L+L  ++ + LLL   + 
Sbjct: 121 LFLLLLALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 62/145 (42%), Positives = 80/145 (55%)

Query: 866  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 925
            LL L L  FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLL
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 926  LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 985
            L L+L+ L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 986  LFLLLFLLLLFLILPLFLLLFLFLL 1010
            LFLLL  L+L  ++ + LLL   + 
Sbjct: 121  LFLLLLALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 62/145 (42%), Positives = 80/145 (55%)

Query: 898  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 957
            LL L L  FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLL
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 958  LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1017
            L L+L+ L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1018 LFLLLFLLLLFLILPLFLLLFLFLL 1042
            LFLLL  L+L  ++ + LLL   + 
Sbjct: 121  LFLLLLALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 62/145 (42%), Positives = 80/145 (55%)

Query: 930  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 989
            LL L L  FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLL
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 990  LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1049
            L L+L+ L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1050 LFLLLFLLLLFLILPLFLLLFLFLL 1074
            LFLLL  L+L  ++ + LLL   + 
Sbjct: 121  LFLLLLALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 62/145 (42%), Positives = 80/145 (55%)

Query: 962  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1021
            LL L L  FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLL
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1022 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1081
            L L+L+ L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1082 LFLLLFLLLLFLILPLFLLLFLFLL 1106
            LFLLL  L+L  ++ + LLL   + 
Sbjct: 121  LFLLLLALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 62/145 (42%), Positives = 80/145 (55%)

Query: 994  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1053
            LL L L  FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLL
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1054 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1113
            L L+L+ L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1114 LFLLLFLLLLFLILPLFLLLFLFLL 1138
            LFLLL  L+L  ++ + LLL   + 
Sbjct: 121  LFLLLLALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 62/145 (42%), Positives = 80/145 (55%)

Query: 1026 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1085
            LL L L  FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLL
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1086 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1145
            L L+L+ L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1146 LFLLLFLLLLFLILPLFLLLFLFLL 1170
            LFLLL  L+L  ++ + LLL   + 
Sbjct: 121  LFLLLLALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 62/145 (42%), Positives = 80/145 (55%)

Query: 1058 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1117
            LL L L  FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLL
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1118 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1177
            L L+L+ L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1178 LFLLLFLLLLFLILPLFLLLFLFLL 1202
            LFLLL  L+L  ++ + LLL   + 
Sbjct: 121  LFLLLLALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 62/145 (42%), Positives = 80/145 (55%)

Query: 1090 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1149
            LL L L  FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLL
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1150 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1209
            L L+L+ L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1210 LFLLLFLLLLFLILPLFLLLFLFLL 1234
            LFLLL  L+L  ++ + LLL   + 
Sbjct: 121  LFLLLLALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 62/145 (42%), Positives = 80/145 (55%)

Query: 1122 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1181
            LL L L  FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLL
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1182 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1241
            L L+L+ L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1242 LFLLLFLLLLFLILPLFLLLFLFLL 1266
            LFLLL  L+L  ++ + LLL   + 
Sbjct: 121  LFLLLLALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 62/145 (42%), Positives = 80/145 (55%)

Query: 1154 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1213
            LL L L  FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLL
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1214 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1273
            L L+L+ L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1274 LFLLLFLLLLFLILPLFLLLFLFLL 1298
            LFLLL  L+L  ++ + LLL   + 
Sbjct: 121  LFLLLLALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 62/145 (42%), Positives = 80/145 (55%)

Query: 1186 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1245
            LL L L  FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLL
Sbjct: 1    LLSLKLARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLL 60

Query: 1246 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1305
            L L+L+ L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL 
Sbjct: 61   LILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLA 120

Query: 1306 LFLLLFLLLLFLILPLFLLLFLFLL 1330
            LFLLL  L+L  ++ + LLL   + 
Sbjct: 121  LFLLLLALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 53.2 bits (128), Expect = 1e-06
 Identities = 79/335 (23%), Positives = 120/335 (35%), Gaps = 36/335 (10%)

Query: 1045 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1104
              LL    +    ++FL LP  L    F L   +   L +  +LL+  L   L  L+  F
Sbjct: 71   PPLLPYLTMALYGIIFLFLPFSLREVCFWLPPVIGGLLGIATYLLVRELKNDLAGLIAAF 130

Query: 1105 LL------------------LLFLLLFLFLLLFLLL----------LFLILPLFLLLFLF 1136
            LL                  +L + L L +L F LL            ++  L L L   
Sbjct: 131  LLAIAPGYVSRTVAGFYDTDMLAIFLPLLVLFFWLLAIKTGSNRIIYAVLAGLPLFLMAL 190

Query: 1137 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1196
                + +  L L L  +L  LI+  F    L L+    L+   +   +  LF+       
Sbjct: 191  AWGGYQVFLLILALLFILALLIMGRFEPKLLILVGFSYLIATIVGGIIQYLFVGFAKVRS 250

Query: 1197 -----LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1251
                  FL   L  LL F  ++  + L F          LFL+L  +   LFLL    L 
Sbjct: 251  SEHMGAFLVFGLAQLLAFGSVVKGVYLSFYQFETLTYPGLFLVLGLIGPVLFLLGL--LG 308

Query: 1252 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL- 1310
            F+ L       LF      +  + L+       L   L  L FL       L+F  LLL 
Sbjct: 309  FIALWTGRFYSLFDYAKIDIPTIILISEWQPTGLYALLAGLRFLIFTFPLGLIFCGLLLE 368

Query: 1311 FLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSF 1345
             L +   I  +  L FL +++  + L L  +++  
Sbjct: 369  DLAVFSFIYSVSQLRFLGVMVFPIMLTLAPVIALI 403

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 52.4 bits (126), Expect = 1e-06
 Identities = 61/260 (23%), Positives = 104/260 (40%), Gaps = 6/260 (2%)

Query: 1013 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1072
             L +FL LL+    L  I      +   +L   L LFL  L +     + L +  LLF+ 
Sbjct: 151  MLAIFLPLLVLFFWLLAIKTGSNRIIYAVLAG-LPLFLMALAW-GGYQVFLLILALLFIL 208

Query: 1073 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1132
             LL+       LL+ +   +LI  +   +  +L + F  +     +   L+F +  L   
Sbjct: 209  ALLIMGRFEPKLLILVGFSYLIATIVGGIIQYLFVGFAKVRSSEHMGAFLVFGLAQLLAF 268

Query: 1133 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1192
                +  ++L  + F  L    LFL+L    L+   L LL LL F+ L            
Sbjct: 269  G-SVVKGVYLSFYQFETLTYPGLFLVL---GLIGPVLFLLGLLGFIALWTGRFYSLFDYA 324

Query: 1193 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1252
               +  + L+  +    L+ LL  L   +      L+F  LLL  L +F F+     L F
Sbjct: 325  KIDIPTIILISEWQPTGLYALLAGLRFLIFTFPLGLIFCGLLLEDLAVFSFIYSVSQLRF 384

Query: 1253 LILPLFLLLFLFLLLLFLLL 1272
            L + +F ++     ++ L+ 
Sbjct: 385  LGVMVFPIMLTLAPVIALIA 404

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 52.4 bits (126), Expect = 1e-06
 Identities = 61/260 (23%), Positives = 104/260 (40%), Gaps = 6/260 (2%)

Query: 1045 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1104
             L +FL LL+    L  I      +   +L   L LFL  L +     + L +  LLF+ 
Sbjct: 151  MLAIFLPLLVLFFWLLAIKTGSNRIIYAVLAG-LPLFLMALAW-GGYQVFLLILALLFIL 208

Query: 1105 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1164
             LL+       LL+ +   +LI  +   +  +L + F  +     +   L+F +  L   
Sbjct: 209  ALLIMGRFEPKLLILVGFSYLIATIVGGIIQYLFVGFAKVRSSEHMGAFLVFGLAQLLAF 268

Query: 1165 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1224
                +  ++L  + F  L    LFL+L    L+   L LL LL F+ L            
Sbjct: 269  G-SVVKGVYLSFYQFETLTYPGLFLVL---GLIGPVLFLLGLLGFIALWTGRFYSLFDYA 324

Query: 1225 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1284
               +  + L+  +    L+ LL  L   +      L+F  LLL  L +F F+     L F
Sbjct: 325  KIDIPTIILISEWQPTGLYALLAGLRFLIFTFPLGLIFCGLLLEDLAVFSFIYSVSQLRF 384

Query: 1285 LILPLFLLLFLFLLLLFLLL 1304
            L + +F ++     ++ L+ 
Sbjct: 385  LGVMVFPIMLTLAPVIALIA 404

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 52.4 bits (126), Expect = 1e-06
 Identities = 117/389 (30%), Positives = 161/389 (41%), Gaps = 2/389 (0%)

Query: 955  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1014
            +LLL LL + L+L L L+L L LLL+  LL     +  LLL ++    LLL L  +L  L
Sbjct: 80   YLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALLLRILSLALLLLPLSSVLRGL 139

Query: 1015 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1074
                     L L  +     L     LL   L L ++ L+   ++ L++ L LL      
Sbjct: 140  FQGFGRFGPLALSIVSSIFLLAAVFALLFAALGLAVWALVLGAVVSLLVLLILLGKKKRG 199

Query: 1075 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1134
            L   +L   L L   LL   LPL L   L  L   +   L  L        I      L 
Sbjct: 200  LKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLV 259

Query: 1135 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1194
              LL++   L   L   L   +       L  L    L LLL + +   L LL L  P+ 
Sbjct: 260  SLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPII 319

Query: 1195 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF--LLLLFLLLFLFLLLFLLLLF 1252
             LLF         +   L L  L L L+     LL       LL L+  +  LL L+L  
Sbjct: 320  TLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNL 379

Query: 1253 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1312
            L++P F L+   +    ++    LL ++L L L+   F    L  L    LL L +L  L
Sbjct: 380  LLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKFSYFLLLKLAALALLLLAILGLL 439

Query: 1313 LLLFLILPLFLLLFLFLLLLFLFLLLLFL 1341
             LL  +L L L+L    +LLFL LLL+ L
Sbjct: 440  ELLVALLLLLLVLLALGILLFLLLLLIAL 468

Length = 480

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 52.5 bits (127), Expect = 1e-06
 Identities = 63/206 (30%), Positives = 81/206 (39%), Gaps = 15/206 (7%)

Query: 1147 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1206
             L    +LLFLI   FL    +L+   L L  FL + L  L          F   LL F 
Sbjct: 1    MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFG 60

Query: 1207 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1266
            L+ L   + +L++     ++       L  FL L LFLL+FLLL F  + L L    F  
Sbjct: 61   LILLSFWICMLMILSSESVYKKNNYSNL--FLFLILFLLIFLLLTFSSMNLLLFYIFFES 118

Query: 1267 LLFLLLFLFLL-------------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1313
             L   LFL L              L    LF  LPL + +F        L F  L  F  
Sbjct: 119  SLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGS 178

Query: 1314 LLFLILPLFLLLFLFLLLLFLFLLLL 1339
            L FL     +L FL  + +F   L L
Sbjct: 179  LNFLWYLSMILAFLVKMPMFFVHLWL 204

Length = 445

>gnl|CDD|224748 COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 70/295 (23%), Positives = 99/295 (33%), Gaps = 7/295 (2%)

Query: 1059 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1118
            LF +L  FL+    L      +          L  ILP  L++ L    L L L      
Sbjct: 55   LFFVLSGFLITRSLLRSAAAPVISLAAFLARRLRRILPALLVVLLLTAALLLALLPPGAS 114

Query: 1119 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1178
              L   L    +L   L  L +        LL  LL    L +    +L   LL LLL  
Sbjct: 115  AALWADLAALFYLSNLLLTLAVGAYFAASGLLSPLLHLWSLSVEEQFYLLFPLLLLLLRR 174

Query: 1179 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1238
                  LLL L+      L L L        L+      L   +L     L+      + 
Sbjct: 175  VRFALALLLLLLALASFFLLLALGPFATGAALYYGTATRLWEFLLGALAALWRPKRRPWP 234

Query: 1239 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1298
             L    L  L L  L+L + L+          LL +  L   LL+  +  L     L   
Sbjct: 235  ALLAAALALLGLALLLLAVALIPGSSPFFPGDLLLVPSLGAALLVLAVAALVGGSRLLSS 294

Query: 1299 LLFLLL-------FLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFS 1346
               + L       +L+    L+ L  ++ L  L    LLL+   L L  LL++ S
Sbjct: 295  RPLVFLGDISYSLYLWHWPVLVFLLYLVGLSGLPISALLLILAALALSILLAALS 349

Length = 386

>gnl|CDD|224748 COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 88/311 (28%), Positives = 113/311 (36%), Gaps = 8/311 (2%)

Query: 799  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 858
            F+    L + LF +L  FL+   LL      +  L  FL   L  +L   L++L L   L
Sbjct: 45   FVGRGVLGVDLFFVLSGFLITRSLLRSAAAPVISLAAFLARRLRRILPALLVVLLLTAAL 104

Query: 859  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLF 917
             L L        L   L    +L  L L L +        LL  +L L+ L       L 
Sbjct: 105  LLALLPPGASAALWADLAALFYLSNLLLTLAVGAYFAASGLLSPLLHLWSLSVEEQFYLL 164

Query: 918  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 977
              L L LL  +     +L L L L  F LLL L  F             L  FLL  L  
Sbjct: 165  FPLLLLLLRRVRFALALLLLLLALASFFLLLALGPFATGAALYYGTATRLWEFLLGALAA 224

Query: 978  LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1037
            L          LL   L  L L L LL    +          LLL   L   +L   +L 
Sbjct: 225  LWRPKRRPWPALLAAALALLGLALLLLAVALIPGSSPFFPGDLLLVPSLGAALL---VLA 281

Query: 1038 FLFLLLLFLLLFLFLLLFLLL----LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1093
               L+    LL    L+FL      L+L     L+  L+L+ L  L    LLL L  L L
Sbjct: 282  VAALVGGSRLLSSRPLVFLGDISYSLYLWHWPVLVFLLYLVGLSGLPISALLLILAALAL 341

Query: 1094 ILPLFLLLFLF 1104
             + L  L + F
Sbjct: 342  SILLAALSYRF 352

Length = 386

>gnl|CDD|224748 COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 88/311 (28%), Positives = 113/311 (36%), Gaps = 8/311 (2%)

Query: 863  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 922
            F+    L + LF +L  FL+   LL      +  L  FL   L  +L   L++L L   L
Sbjct: 45   FVGRGVLGVDLFFVLSGFLITRSLLRSAAAPVISLAAFLARRLRRILPALLVVLLLTAAL 104

Query: 923  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLF 981
             L L        L   L    +L  L L L +        LL  +L L+ L       L 
Sbjct: 105  LLALLPPGASAALWADLAALFYLSNLLLTLAVGAYFAASGLLSPLLHLWSLSVEEQFYLL 164

Query: 982  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1041
              L L LL  +     +L L L L  F LLL L  F             L  FLL  L  
Sbjct: 165  FPLLLLLLRRVRFALALLLLLLALASFFLLLALGPFATGAALYYGTATRLWEFLLGALAA 224

Query: 1042 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1101
            L          LL   L  L L L LL    +          LLL   L   +L   +L 
Sbjct: 225  LWRPKRRPWPALLAAALALLGLALLLLAVALIPGSSPFFPGDLLLVPSLGAALL---VLA 281

Query: 1102 FLFLLLLFLLLFLFLLLFLLL----LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1157
               L+    LL    L+FL      L+L     L+  L+L+ L  L    LLL L  L L
Sbjct: 282  VAALVGGSRLLSSRPLVFLGDISYSLYLWHWPVLVFLLYLVGLSGLPISALLLILAALAL 341

Query: 1158 ILPLFLLLFLF 1168
             + L  L + F
Sbjct: 342  SILLAALSYRF 352

Length = 386

>gnl|CDD|224748 COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 88/311 (28%), Positives = 113/311 (36%), Gaps = 8/311 (2%)

Query: 927  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 986
            F+    L + LF +L  FL+   LL      +  L  FL   L  +L   L++L L   L
Sbjct: 45   FVGRGVLGVDLFFVLSGFLITRSLLRSAAAPVISLAAFLARRLRRILPALLVVLLLTAAL 104

Query: 987  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLF 1045
             L L        L   L    +L  L L L +        LL  +L L+ L       L 
Sbjct: 105  LLALLPPGASAALWADLAALFYLSNLLLTLAVGAYFAASGLLSPLLHLWSLSVEEQFYLL 164

Query: 1046 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1105
              L L LL  +     +L L L L  F LLL L  F             L  FLL  L  
Sbjct: 165  FPLLLLLLRRVRFALALLLLLLALASFFLLLALGPFATGAALYYGTATRLWEFLLGALAA 224

Query: 1106 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1165
            L          LL   L  L L L LL    +          LLL   L   +L   +L 
Sbjct: 225  LWRPKRRPWPALLAAALALLGLALLLLAVALIPGSSPFFPGDLLLVPSLGAALL---VLA 281

Query: 1166 FLFLLLLFLLLFLFLLLFLLL----LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1221
               L+    LL    L+FL      L+L     L+  L+L+ L  L    LLL L  L L
Sbjct: 282  VAALVGGSRLLSSRPLVFLGDISYSLYLWHWPVLVFLLYLVGLSGLPISALLLILAALAL 341

Query: 1222 ILPLFLLLFLF 1232
             + L  L + F
Sbjct: 342  SILLAALSYRF 352

Length = 386

>gnl|CDD|224748 COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]

 Score = 52.1 bits (125), Expect = 1e-06
 Identities = 88/311 (28%), Positives = 113/311 (36%), Gaps = 8/311 (2%)

Query: 991  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1050
            F+    L + LF +L  FL+   LL      +  L  FL   L  +L   L++L L   L
Sbjct: 45   FVGRGVLGVDLFFVLSGFLITRSLLRSAAAPVISLAAFLARRLRRILPALLVVLLLTAAL 104

Query: 1051 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLF 1109
             L L        L   L    +L  L L L +        LL  +L L+ L       L 
Sbjct: 105  LLALLPPGASAALWADLAALFYLSNLLLTLAVGAYFAASGLLSPLLHLWSLSVEEQFYLL 164

Query: 1110 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1169
              L L LL  +     +L L L L  F LLL L  F             L  FLL  L  
Sbjct: 165  FPLLLLLLRRVRFALALLLLLLALASFFLLLALGPFATGAALYYGTATRLWEFLLGALAA 224

Query: 1170 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1229
            L          LL   L  L L L LL    +          LLL   L   +L   +L 
Sbjct: 225  LWRPKRRPWPALLAAALALLGLALLLLAVALIPGSSPFFPGDLLLVPSLGAALL---VLA 281

Query: 1230 FLFLLLLFLLLFLFLLLFLLL----LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1285
               L+    LL    L+FL      L+L     L+  L+L+ L  L    LLL L  L L
Sbjct: 282  VAALVGGSRLLSSRPLVFLGDISYSLYLWHWPVLVFLLYLVGLSGLPISALLLILAALAL 341

Query: 1286 ILPLFLLLFLF 1296
             + L  L + F
Sbjct: 342  SILLAALSYRF 352

Length = 386

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 52.7 bits (127), Expect = 1e-06
 Identities = 56/230 (24%), Positives = 90/230 (39%), Gaps = 23/230 (10%)

Query: 761 DISVLPNAII---TQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 817
           + + +  A++        I   +L+L    +  +L L +     L FL L    LL++ L
Sbjct: 683 NFATIVLAVVEGRRVYVNIKKFILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINL 742

Query: 818 L---LLFLLLFLF-----------------LLLFLLLLFLILPLFLLLFLFLLLLFLLLF 857
           L   L  L L +                  L    +    IL + LL  +  +L FLL  
Sbjct: 743 LTDSLPALALGVEDPESDVMKRPPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYL 802

Query: 858 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 917
           L  +   L L L   L       +L+L  LL    +      FL   LF   +L+L LL 
Sbjct: 803 LGFIANTLGLDLFQALLQTTAFTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLV 862

Query: 918 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 967
           +++   L++FL  L L +     L LF  L+ + + L LL  ++     L
Sbjct: 863 IIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]

 Score = 51.7 bits (124), Expect = 2e-06
 Identities = 93/320 (29%), Positives = 117/320 (36%), Gaps = 9/320 (2%)

Query: 1031 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1090
                 LL   LLL+ L L L  L    L       +  +   +L         LL     
Sbjct: 3    ALRSRLLLWLLLLIALALLLPGLGSRPLWDPDEARYAEIAREMLESGDWFTPQLLGLPYF 62

Query: 1091 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1150
                L  +L    +LL         L   L      L ++ L       L  LL   +LL
Sbjct: 63   EKPPLVYWLQALSYLLFGVNEWSARLPSALAGALTALLVYWLAKRLFGRLAALLAALILL 122

Query: 1151 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL--L 1208
               L FLI  L LL      L F L     LL+L L       +LLL    L L  L   
Sbjct: 123  LTPLFFLIGRLALLDAA---LAFFLTLALALLYLALRARGKLKWLLLLGLALGLGFLTKG 179

Query: 1209 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1268
               LLL L+LL L+L   L   L  L L+L L L LL  L  L  I   F   F  L L 
Sbjct: 180  PGALLLPLILLLLLLAPRLRRLLRDLRLWLGLLLGLLPVLPWLLAIQAQFAPYFGHLFLT 239

Query: 1269 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1328
            F     F  +              L+L+LL+L L +  +LLL    L L       L + 
Sbjct: 240  FGWEEDFQRVA----SGDEHHSGPLWLYLLVLLLGVIPWLLLLPGALRLRWAKRGKLAVA 295

Query: 1329 LLLLFLFLLLLFLLSSFSSS 1348
            LL L L+LLL  L  S ++ 
Sbjct: 296  LLFLLLWLLLPLLFFSLAAG 315

Length = 535

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 51.8 bits (125), Expect = 2e-06
 Identities = 62/230 (26%), Positives = 88/230 (38%), Gaps = 33/230 (14%)

Query: 1148 LLLFLLLLFLILPLFLLLFLFLL-LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1206
            +L+ L ++ L+L L  LL       L+     +L +F   L   + LFLL+FL       
Sbjct: 5    VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIF----- 59

Query: 1207 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1266
              FLFL L LLL +   P F+ L        L  +  ++L    L L+    +L  L  L
Sbjct: 60   --FLFLFLNLLLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVLGLLAGL 117

Query: 1267 LLF-----LLLFLF--------LLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLF 1311
                    +LLFL          +    + F +  LP   LL  +LL L LL  +  LL 
Sbjct: 118  SASSRWETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLLALLLLALIATLLT 177

Query: 1312 LLL--------LFLILPLFLLLFLFLLLLFLFLLL--LFLLSSFSSSSSS 1351
              L         F  L       L +LL   FLL    + L  +    S 
Sbjct: 178  YYLYGGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELLYSG 227

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 54/128 (42%), Positives = 71/128 (55%)

Query: 776 ISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 835
              LLL L L+LL L L L L+  LL+LFL L + L      +L FLLL L L+L LL+L
Sbjct: 13  FLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVLLLLIL 72

Query: 836 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 895
             +    L L  F+L+  L+  L +  F L L L L L L + L LL LFLLL   +L  
Sbjct: 73  AWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLLALVLAT 132

Query: 896 LLLLFLIL 903
           L+ + L+L
Sbjct: 133 LIAILLLL 140

Length = 365

>gnl|CDD|226888 COG4485, COG4485, Predicted membrane protein [Function unknown]

 Score = 52.1 bits (125), Expect = 2e-06
 Identities = 72/359 (20%), Positives = 129/359 (35%), Gaps = 40/359 (11%)

Query: 1044 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1103
            L  L+F F L   +   + LP  +   L  L  F+   +    F +LL L +  F  L  
Sbjct: 89   LMPLVFFFDLT-SMPDAIYLPTLIKFGLIGLSAFISFVVLFQKFSILLKLRISTFYALMS 147

Query: 1104 FLLLLFLLLFLFLLLFLLLLFLILPLFLLL--------FLFLLLLFLLLFLF---LLLFL 1152
            F +   L ++ +L +F+LL  +IL L  L+         + + LLF+  + F     +F+
Sbjct: 148  FGVSQ-LEIYTWLDVFILLPLIILGLERLITERKIGLYIVSISLLFIQNYYFGYMQAIFI 206

Query: 1153 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL----------- 1201
             L +L            + +       +   L    ++LP    LF              
Sbjct: 207  GLYYLFWLRERDEKKRWIDIVDFTVSSICAGLASALMVLPTVFDLFTHGEALSENDRKQT 266

Query: 1202 ---LLLFLLLFLFLLLFLLLLFLILPLFLL-LFLFLLLLFLLLFLFLLLFLLLLFLILPL 1257
                L  +    F+  +    F  +P+  + +F   L++ L     +   +  LF  L  
Sbjct: 267  ENSWLFDIPAKNFIGPYDTTKFNAIPMIYVGIFPLALIVLLFTLKSIRFRVKRLFAGLTA 326

Query: 1258 FLLLFLFLLLL------------FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1305
            F ++  +   L            FL  + ++   L+ L     L  L  L    L   +F
Sbjct: 327  FFIISFYSQYLDLFWQGMHSPNMFLHRYAYIFSLLISLLAAETLSRLSELKKKYLLRTIF 386

Query: 1306 LFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSSSSSSSFSYSSSSSSSSF 1364
            + +L FL +L      FL +   +LLL L ++    L +F   + S   +         
Sbjct: 387  VVILGFLYILLSPHYPFLPIVGIILLLLLLVIYKLSLWAFKKKTISILVFIIIILQFVL 445

Length = 858

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 51.6 bits (124), Expect = 2e-06
 Identities = 64/248 (25%), Positives = 96/248 (38%), Gaps = 15/248 (6%)

Query: 768  AIITQSDAISFLLLFLFLLLLFLL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLL 820
            AI T S+ I + +L    L L  L         L L L  +L  LI+  F    L L+  
Sbjct: 167  AIKTGSNRIIYAVLAGLPLFLMALAWGGYQVFLLILALLFILALLIMGRFEPKLLILVGF 226

Query: 821  FLLLFLFLLLFLLLLFLILPLFLL-----LFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 875
              L+   +   +  LF+             FL   L  LL F  ++  + L F       
Sbjct: 227  SYLIATIVGGIIQYLFVGFAKVRSSEHMGAFLVFGLAQLLAFGSVVKGVYLSFYQFETLT 286

Query: 876  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 935
               LFL+L  +   LFLL    L F+ L       LF      +  + L+       L  
Sbjct: 287  YPGLFLVLGLIGPVLFLLGL--LGFIALWTGRFYSLFDYAKIDIPTIILISEWQPTGLYA 344

Query: 936  PLFLLLFLFLLLLFLLLFLFLLL-FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 994
             L  L FL       L+F  LLL  L +   I  +  L FL +++  ++L L  ++ L+ 
Sbjct: 345  LLAGLRFLIFTFPLGLIFCGLLLEDLAVFSFIYSVSQLRFLGVMVFPIMLTLAPVIALIA 404

Query: 995  LFLILPLF 1002
             +L  P+F
Sbjct: 405  AYLASPIF 412

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 52.1 bits (125), Expect = 2e-06
 Identities = 119/392 (30%), Positives = 161/392 (41%), Gaps = 8/392 (2%)

Query: 776  ISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 835
               LLL L L+LL LLL +  LL  +   L L L +L    LLL    +   L       
Sbjct: 87   SVLLLLLLALILLLLLLLIAYLLAPIDPVLALLLRILSLALLLLPLSSVLRGLFQGFGRF 146

Query: 836  FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 895
              +    +     L  +F LLF  L L +  L L   + LL+ L LL          +L 
Sbjct: 147  GPLALSIVSSIFLLAAVFALLFAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILR 206

Query: 896  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 955
              L  L   L   L L L  L   LF  +   LL LFL      +      L+ LLL + 
Sbjct: 207  FSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVA 266

Query: 956  LLLFLLLL------FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1009
              L  +L       +       L  L    L LLL + +   L LL L  P+  LLF   
Sbjct: 267  SALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK 326

Query: 1010 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLF--LLLLFLLLFLFLLLFLLLLFLILPLFL 1067
                  +   L L  L L L+     LL       LL L+  +  LL L+L  L++P F 
Sbjct: 327  YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPRFG 386

Query: 1068 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1127
            L+   +    ++    LL ++L L L+   F    L  L    LL L +L  L LL  +L
Sbjct: 387  LIGAAIATASVIALALLLFYILRLRLVRTKFSYFLLLKLAALALLLLAILGLLELLVALL 446

Query: 1128 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1159
             L L+L    +LLFLLL L  L+ +LLL L+L
Sbjct: 447  LLLLVLLALGILLFLLLLLIALVLILLLRLLL 478

Length = 480

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 51.7 bits (125), Expect = 2e-06
 Identities = 62/200 (31%), Positives = 81/200 (40%), Gaps = 15/200 (7%)

Query: 863  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 922
             L  LF++L L  L FL      +   LFLL FL +L   L  +     +   L LL F 
Sbjct: 1    MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFG 60

Query: 923  FLLLFLLLLFLILPLF--LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 980
             +LL   +  L++     +        LFL L LFLL+FLLL F  + L L    F   L
Sbjct: 61   LILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSL 120

Query: 981  FLLLFLFLL-------------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1027
               LFL L              L    LF  LPL + +F        L F  L  F  L 
Sbjct: 121  IPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLN 180

Query: 1028 FLILPLFLLLFLFLLLLFLL 1047
            FL     +L FL  + +F +
Sbjct: 181  FLWYLSMILAFLVKMPMFFV 200

Length = 445

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 51.7 bits (125), Expect = 2e-06
 Identities = 62/200 (31%), Positives = 81/200 (40%), Gaps = 15/200 (7%)

Query: 895  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 954
             L  LF++L L  L FL      +   LFLL FL +L   L  +     +   L LL F 
Sbjct: 1    MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFG 60

Query: 955  FLLLFLLLLFLILPLF--LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1012
             +LL   +  L++     +        LFL L LFLL+FLLL F  + L L    F   L
Sbjct: 61   LILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSL 120

Query: 1013 FLLLFLFLL-------------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1059
               LFL L              L    LF  LPL + +F        L F  L  F  L 
Sbjct: 121  IPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLN 180

Query: 1060 FLILPLFLLLFLFLLLLFLL 1079
            FL     +L FL  + +F +
Sbjct: 181  FLWYLSMILAFLVKMPMFFV 200

Length = 445

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 51.7 bits (125), Expect = 2e-06
 Identities = 62/200 (31%), Positives = 81/200 (40%), Gaps = 15/200 (7%)

Query: 927  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 986
             L  LF++L L  L FL      +   LFLL FL +L   L  +     +   L LL F 
Sbjct: 1    MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFG 60

Query: 987  FLLLFLLLLFLILPLF--LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1044
             +LL   +  L++     +        LFL L LFLL+FLLL F  + L L    F   L
Sbjct: 61   LILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSL 120

Query: 1045 FLLLFLFLL-------------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1091
               LFL L              L    LF  LPL + +F        L F  L  F  L 
Sbjct: 121  IPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLN 180

Query: 1092 FLILPLFLLLFLFLLLLFLL 1111
            FL     +L FL  + +F +
Sbjct: 181  FLWYLSMILAFLVKMPMFFV 200

Length = 445

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 51.7 bits (125), Expect = 2e-06
 Identities = 62/200 (31%), Positives = 81/200 (40%), Gaps = 15/200 (7%)

Query: 1023 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1082
             L  LF++L L  L FL      +   LFLL FL +L   L  +     +   L LL F 
Sbjct: 1    MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFG 60

Query: 1083 FLLLFLLLLFLILPLF--LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1140
             +LL   +  L++     +        LFL L LFLL+FLLL F  + L L    F   L
Sbjct: 61   LILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSL 120

Query: 1141 FLLLFLFLL-------------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1187
               LFL L              L    LF  LPL + +F        L F  L  F  L 
Sbjct: 121  IPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLN 180

Query: 1188 FLILPLFLLLFLFLLLLFLL 1207
            FL     +L FL  + +F +
Sbjct: 181  FLWYLSMILAFLVKMPMFFV 200

Length = 445

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 51.7 bits (125), Expect = 2e-06
 Identities = 62/200 (31%), Positives = 81/200 (40%), Gaps = 15/200 (7%)

Query: 1055 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1114
             L  LF++L L  L FL      +   LFLL FL +L   L  +     +   L LL F 
Sbjct: 1    MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFG 60

Query: 1115 FLLLFLLLLFLILPLF--LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1172
             +LL   +  L++     +        LFL L LFLL+FLLL F  + L L    F   L
Sbjct: 61   LILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSL 120

Query: 1173 FLLLFLFLL-------------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1219
               LFL L              L    LF  LPL + +F        L F  L  F  L 
Sbjct: 121  IPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLN 180

Query: 1220 FLILPLFLLLFLFLLLLFLL 1239
            FL     +L FL  + +F +
Sbjct: 181  FLWYLSMILAFLVKMPMFFV 200

Length = 445

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 51.7 bits (125), Expect = 2e-06
 Identities = 62/200 (31%), Positives = 81/200 (40%), Gaps = 15/200 (7%)

Query: 1087 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1146
             L  LF++L L  L FL      +   LFLL FL +L   L  +     +   L LL F 
Sbjct: 1    MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFG 60

Query: 1147 FLLLFLLLLFLILPLF--LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1204
             +LL   +  L++     +        LFL L LFLL+FLLL F  + L L    F   L
Sbjct: 61   LILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSL 120

Query: 1205 FLLLFLFLL-------------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1251
               LFL L              L    LF  LPL + +F        L F  L  F  L 
Sbjct: 121  IPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLN 180

Query: 1252 FLILPLFLLLFLFLLLLFLL 1271
            FL     +L FL  + +F +
Sbjct: 181  FLWYLSMILAFLVKMPMFFV 200

Length = 445

>gnl|CDD|177158 MTH00095, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 51.8 bits (125), Expect = 2e-06
 Identities = 106/527 (20%), Positives = 177/527 (33%), Gaps = 39/527 (7%)

Query: 779  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 838
            + + +FL+L F    L  +LFL  + L L      FL L   F    L   L LLL+ L 
Sbjct: 1    MNILIFLILFFFFFLLLFILFLPFMKLNLFFLEWDFLSLKFNFYFNSLLFSLILLLVTLS 60

Query: 839  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 898
            + +F   ++   L F   +  LL+F+  +F++     +  + L    L +  F L+    
Sbjct: 61   VLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLVLFYN 120

Query: 899  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF----- 953
             +      +   L   +    +FLF   F+   +            +L+L L  F     
Sbjct: 121  NWDSNSGAMNTALTNRIGDFFIFLFFSGFIFSSYYFFSFSFFSSSMILMLLLTSFTKSAQ 180

Query: 954  --------------------------LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 987
                                      +   L LL+ F  L L + +   +LL+ L    F
Sbjct: 181  FPFSSWLPKAMSAPTPVSSLVHSSTLVTAGLILLMNFSYLILNMNVMKIMLLIGLFTMFF 240

Query: 988  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL- 1046
              L  L+   +  +  L  L  +   +L F   L F+  + L+        LF+ + +L 
Sbjct: 241  SSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLI 300

Query: 1047 -------LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1099
                       +     L +F+ L L + LF    L+F    +   L L L F    +  
Sbjct: 301  HSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIF 360

Query: 1100 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1159
               +F   +FL       L+         +  +    +L+ FL L L       L +L  
Sbjct: 361  FSLMFFFSVFLTFGYSYRLWKSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVFFLWWLNF 420

Query: 1160 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1219
             L  L  LFL L F +   +L + +L  F    L      +   +       +     L 
Sbjct: 421  NLLNLPSLFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLK 480

Query: 1220 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1266
            F  L L    +          F F        +  L + L L    L
Sbjct: 481  FFDLFLNKFGYKGFNFFSSFSFFFFSYMKSFKYNSLLILLFLIFLFL 527

Length = 527

>gnl|CDD|222703 pfam14351, DUF4401, Domain of unknown function (DUF4401)

 Score = 51.1 bits (123), Expect = 2e-06
 Identities = 106/303 (34%), Positives = 134/303 (44%), Gaps = 6/303 (1%)

Query: 1042 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1101
            L L   L L   L       ++   +L+ + + LL  L  LFL    L L L   L L  
Sbjct: 17   LFLLGFLALAFNLVFDEGGALVVGLILIAIAVALLRKLPSLFLRQLALALSLAGQLLLAF 76

Query: 1102 FLFLLLL--FLLLFLFLLLFLLLLFLILPLFLLLFLFL-LLLFLLLFLFLLLFLLLLFLI 1158
             LF LL    L   L L L L LL+ ++P  LL FL     +  LL L   L L  L  +
Sbjct: 77   GLFDLLDESVLAALLLLALILALLYFLMPDRLLRFLSAAAGVLALLGLLAELLLSGLAYL 136

Query: 1159 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1218
            L     L L  L +FLLL L L        L+ PL   L L LL L L+L    L+    
Sbjct: 137  LLPLAPLLLVALFVFLLLNLILGRLRRRHALLEPLAYGLLLSLLALLLVLSGNSLILGAP 196

Query: 1219 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1278
             FL   L  LL L LLL+ L L L  +L+     L   L  ++ L LLLL LL      L
Sbjct: 197  FFLASWLKALL-LLLLLVGLALLLISILWRRRQPLTSKLQAVVLLALLLLALLSLPAPGL 255

Query: 1279 FLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFL 1336
               LL L+L  +    + L L LL LLL+L    + L + L+    LL    +LLL   L
Sbjct: 256  GAALLLLLLGFYRGSRVLLGLGLLALLLYLSWYYYSLGITLLAKSLLLAGSGILLLGARL 315

Query: 1337 LLL 1339
            LLL
Sbjct: 316  LLL 318

This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important. Length = 321

>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General function prediction only]

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 124/450 (27%), Positives = 163/450 (36%), Gaps = 6/450 (1%)

Query: 785  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 844
            +    L   L   +  LLL  IL   LL +L LLL  LLL L LLL   L    L L LL
Sbjct: 1    MSGTRLSRLLLRFVAALLLLGILLALLLSWLPLLLAALLLLLALLLARALPLSKLLLVLL 60

Query: 845  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 904
            L  FLL +F  LFL LL   L +         + + L+      +   L         L 
Sbjct: 61   LAFFLLGIFAALFLLLLSLALYISGGTIALNFVIIDLISGDTDRYRLSLGRGQGRNDQLK 120

Query: 905  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLFLLL 962
            L L L      +  L     +   L L L           L   L    +     +F   
Sbjct: 121  LRLSLEREKEAVGALGGALWINETLKLELPQGALNLGGFDLEAYLGAQGIGALGTVFQAA 180

Query: 963  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1022
            +        L      L+  LL+L LL  L  L L L L  L  LF  L      L L  
Sbjct: 181  IISRSLPRFLRSRIRRLVAQLLYLLLLGPLGGLLLALLLGELSGLFKELWEAFRALGLAH 240

Query: 1023 FL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1078
             L    L + L+   FL L   L          LL  L L + IL  F    L  L++  
Sbjct: 241  LLAISGLHVALLAGTFLFLLRRLGRWIGPALPLLLGLLALFYAILTGFSPSVLRALVMLA 300

Query: 1079 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1138
            L  L  L    L  + + L   + + LL    +L L   L  L +  ++    L  L  L
Sbjct: 301  LALLASLSLRNLSSIFILLLSAIAILLLAPLAILSLGFWLSFLAVAALILWSQLFRLLGL 360

Query: 1139 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1198
               L + L LL  L LL L      LL L L L+   L   + L  LL   +L   +   
Sbjct: 361  SWPLPITLALLATLPLLILQFGRLGLLGLLLNLIVSPLISLISLPGLLANFLLSPLVSFL 420

Query: 1199 LFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1228
            +  L+L  LL   LL+   L  +   +F L
Sbjct: 421  IVPLILLGLLLAPLLIGAALARVRPGVFGL 450

Length = 453

>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General function prediction only]

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 124/450 (27%), Positives = 163/450 (36%), Gaps = 6/450 (1%)

Query: 817  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 876
            +    L   L   +  LLL  IL   LL +L LLL  LLL L LLL   L    L L LL
Sbjct: 1    MSGTRLSRLLLRFVAALLLLGILLALLLSWLPLLLAALLLLLALLLARALPLSKLLLVLL 60

Query: 877  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 936
            L  FLL +F  LFL LL   L +         + + L+      +   L         L 
Sbjct: 61   LAFFLLGIFAALFLLLLSLALYISGGTIALNFVIIDLISGDTDRYRLSLGRGQGRNDQLK 120

Query: 937  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLFLLL 994
            L L L      +  L     +   L L L           L   L    +     +F   
Sbjct: 121  LRLSLEREKEAVGALGGALWINETLKLELPQGALNLGGFDLEAYLGAQGIGALGTVFQAA 180

Query: 995  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1054
            +        L      L+  LL+L LL  L  L L L L  L  LF  L      L L  
Sbjct: 181  IISRSLPRFLRSRIRRLVAQLLYLLLLGPLGGLLLALLLGELSGLFKELWEAFRALGLAH 240

Query: 1055 FL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1110
             L    L + L+   FL L   L          LL  L L + IL  F    L  L++  
Sbjct: 241  LLAISGLHVALLAGTFLFLLRRLGRWIGPALPLLLGLLALFYAILTGFSPSVLRALVMLA 300

Query: 1111 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1170
            L  L  L    L  + + L   + + LL    +L L   L  L +  ++    L  L  L
Sbjct: 301  LALLASLSLRNLSSIFILLLSAIAILLLAPLAILSLGFWLSFLAVAALILWSQLFRLLGL 360

Query: 1171 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1230
               L + L LL  L LL L      LL L L L+   L   + L  LL   +L   +   
Sbjct: 361  SWPLPITLALLATLPLLILQFGRLGLLGLLLNLIVSPLISLISLPGLLANFLLSPLVSFL 420

Query: 1231 LFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1260
            +  L+L  LL   LL+   L  +   +F L
Sbjct: 421  IVPLILLGLLLAPLLIGAALARVRPGVFGL 450

Length = 453

>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General function prediction only]

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 124/450 (27%), Positives = 163/450 (36%), Gaps = 6/450 (1%)

Query: 849  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 908
            +    L   L   +  LLL  IL   LL +L LLL  LLL L LLL   L    L L LL
Sbjct: 1    MSGTRLSRLLLRFVAALLLLGILLALLLSWLPLLLAALLLLLALLLARALPLSKLLLVLL 60

Query: 909  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 968
            L  FLL +F  LFL LL   L +         + + L+      +   L         L 
Sbjct: 61   LAFFLLGIFAALFLLLLSLALYISGGTIALNFVIIDLISGDTDRYRLSLGRGQGRNDQLK 120

Query: 969  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLFLLL 1026
            L L L      +  L     +   L L L           L   L    +     +F   
Sbjct: 121  LRLSLEREKEAVGALGGALWINETLKLELPQGALNLGGFDLEAYLGAQGIGALGTVFQAA 180

Query: 1027 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1086
            +        L      L+  LL+L LL  L  L L L L  L  LF  L      L L  
Sbjct: 181  IISRSLPRFLRSRIRRLVAQLLYLLLLGPLGGLLLALLLGELSGLFKELWEAFRALGLAH 240

Query: 1087 FL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1142
             L    L + L+   FL L   L          LL  L L + IL  F    L  L++  
Sbjct: 241  LLAISGLHVALLAGTFLFLLRRLGRWIGPALPLLLGLLALFYAILTGFSPSVLRALVMLA 300

Query: 1143 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1202
            L  L  L    L  + + L   + + LL    +L L   L  L +  ++    L  L  L
Sbjct: 301  LALLASLSLRNLSSIFILLLSAIAILLLAPLAILSLGFWLSFLAVAALILWSQLFRLLGL 360

Query: 1203 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1262
               L + L LL  L LL L      LL L L L+   L   + L  LL   +L   +   
Sbjct: 361  SWPLPITLALLATLPLLILQFGRLGLLGLLLNLIVSPLISLISLPGLLANFLLSPLVSFL 420

Query: 1263 LFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1292
            +  L+L  LL   LL+   L  +   +F L
Sbjct: 421  IVPLILLGLLLAPLLIGAALARVRPGVFGL 450

Length = 453

>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General function prediction only]

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 124/450 (27%), Positives = 163/450 (36%), Gaps = 6/450 (1%)

Query: 881  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 940
            +    L   L   +  LLL  IL   LL +L LLL  LLL L LLL   L    L L LL
Sbjct: 1    MSGTRLSRLLLRFVAALLLLGILLALLLSWLPLLLAALLLLLALLLARALPLSKLLLVLL 60

Query: 941  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1000
            L  FLL +F  LFL LL   L +         + + L+      +   L         L 
Sbjct: 61   LAFFLLGIFAALFLLLLSLALYISGGTIALNFVIIDLISGDTDRYRLSLGRGQGRNDQLK 120

Query: 1001 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLFLLL 1058
            L L L      +  L     +   L L L           L   L    +     +F   
Sbjct: 121  LRLSLEREKEAVGALGGALWINETLKLELPQGALNLGGFDLEAYLGAQGIGALGTVFQAA 180

Query: 1059 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1118
            +        L      L+  LL+L LL  L  L L L L  L  LF  L      L L  
Sbjct: 181  IISRSLPRFLRSRIRRLVAQLLYLLLLGPLGGLLLALLLGELSGLFKELWEAFRALGLAH 240

Query: 1119 FL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1174
             L    L + L+   FL L   L          LL  L L + IL  F    L  L++  
Sbjct: 241  LLAISGLHVALLAGTFLFLLRRLGRWIGPALPLLLGLLALFYAILTGFSPSVLRALVMLA 300

Query: 1175 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1234
            L  L  L    L  + + L   + + LL    +L L   L  L +  ++    L  L  L
Sbjct: 301  LALLASLSLRNLSSIFILLLSAIAILLLAPLAILSLGFWLSFLAVAALILWSQLFRLLGL 360

Query: 1235 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1294
               L + L LL  L LL L      LL L L L+   L   + L  LL   +L   +   
Sbjct: 361  SWPLPITLALLATLPLLILQFGRLGLLGLLLNLIVSPLISLISLPGLLANFLLSPLVSFL 420

Query: 1295 LFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1324
            +  L+L  LL   LL+   L  +   +F L
Sbjct: 421  IVPLILLGLLLAPLLIGAALARVRPGVFGL 450

Length = 453

>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 58/139 (41%), Positives = 76/139 (54%)

Query: 776 ISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 835
             FLL FL LLLL LL+ L L L L L+  +L LFL L + L  L L +  FLLL L+L+
Sbjct: 7   ARFLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILV 66

Query: 836 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 895
            L+L L  L    L L F +L   L+  L +    L L L L L L +  +LL LFLLL 
Sbjct: 67  LLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLLAIALILLALFLLLL 126

Query: 896 LLLLFLILPLFLLLFLFLL 914
            L+L  ++ + LLL   + 
Sbjct: 127 ALVLATLIAILLLLEGVIR 145

Length = 365

>gnl|CDD|222703 pfam14351, DUF4401, Domain of unknown function (DUF4401)

 Score = 50.3 bits (121), Expect = 3e-06
 Identities = 100/302 (33%), Positives = 127/302 (42%), Gaps = 6/302 (1%)

Query: 882  LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 941
            L L   L L   L       ++   +L+ + + LL  L  LFL    L L L   L L  
Sbjct: 17   LFLLGFLALAFNLVFDEGGALVVGLILIAIAVALLRKLPSLFLRQLALALSLAGQLLLAF 76

Query: 942  FLFLLLL---FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 998
             LF LL       L L  L+  LL FL+    L        +  LL L   L L  L  +
Sbjct: 77   GLFDLLDESVLAALLLLALILALLYFLMPDRLLRFLSAAAGVLALLGLLAELLLSGLAYL 136

Query: 999  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1058
            L     L L  L +FLLL L L        L+ PL   L L LL L L+L    L+    
Sbjct: 137  LLPLAPLLLVALFVFLLLNLILGRLRRRHALLEPLAYGLLLSLLALLLVLSGNSLILGAP 196

Query: 1059 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1118
             FL   L  LL L LLL+ L L L  +L+     L   L  ++ L LLLL LL      L
Sbjct: 197  FFLASWLKALL-LLLLLVGLALLLISILWRRRQPLTSKLQAVVLLALLLLALLSLPAPGL 255

Query: 1119 FLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1176
               LL L+L  +    + L L LL LLL+L    + L + L+    LL    +LLL   L
Sbjct: 256  GAALLLLLLGFYRGSRVLLGLGLLALLLYLSWYYYSLGITLLAKSLLLAGSGILLLGARL 315

Query: 1177 FL 1178
             L
Sbjct: 316  LL 317

This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important. Length = 321

>gnl|CDD|222703 pfam14351, DUF4401, Domain of unknown function (DUF4401)

 Score = 50.3 bits (121), Expect = 3e-06
 Identities = 100/302 (33%), Positives = 127/302 (42%), Gaps = 6/302 (1%)

Query: 946  LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1005
            L L   L L   L       ++   +L+ + + LL  L  LFL    L L L   L L  
Sbjct: 17   LFLLGFLALAFNLVFDEGGALVVGLILIAIAVALLRKLPSLFLRQLALALSLAGQLLLAF 76

Query: 1006 FLFLLLL---FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1062
             LF LL       L L  L+  LL FL+    L        +  LL L   L L  L  +
Sbjct: 77   GLFDLLDESVLAALLLLALILALLYFLMPDRLLRFLSAAAGVLALLGLLAELLLSGLAYL 136

Query: 1063 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1122
            L     L L  L +FLLL L L        L+ PL   L L LL L L+L    L+    
Sbjct: 137  LLPLAPLLLVALFVFLLLNLILGRLRRRHALLEPLAYGLLLSLLALLLVLSGNSLILGAP 196

Query: 1123 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1182
             FL   L  LL L LLL+ L L L  +L+     L   L  ++ L LLLL LL      L
Sbjct: 197  FFLASWLKALL-LLLLLVGLALLLISILWRRRQPLTSKLQAVVLLALLLLALLSLPAPGL 255

Query: 1183 FLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1240
               LL L+L  +    + L L LL LLL+L    + L + L+    LL    +LLL   L
Sbjct: 256  GAALLLLLLGFYRGSRVLLGLGLLALLLYLSWYYYSLGITLLAKSLLLAGSGILLLGARL 315

Query: 1241 FL 1242
             L
Sbjct: 316  LL 317

This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important. Length = 321

>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General function prediction only]

 Score = 51.0 bits (122), Expect = 3e-06
 Identities = 120/438 (27%), Positives = 158/438 (36%), Gaps = 6/438 (1%)

Query: 913  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 972
            +    L   L   +  LLL  IL   LL +L LLL  LLL L LLL   L    L L LL
Sbjct: 1    MSGTRLSRLLLRFVAALLLLGILLALLLSWLPLLLAALLLLLALLLARALPLSKLLLVLL 60

Query: 973  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1032
            L  FLL +F  LFL LL   L +         + + L+      +   L         L 
Sbjct: 61   LAFFLLGIFAALFLLLLSLALYISGGTIALNFVIIDLISGDTDRYRLSLGRGQGRNDQLK 120

Query: 1033 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLI--LPLFLLLFLFLLLLFLLLFLFLLLFLLL 1090
            L L L      +  L     +   L L L           L   L    +     +F   
Sbjct: 121  LRLSLEREKEAVGALGGALWINETLKLELPQGALNLGGFDLEAYLGAQGIGALGTVFQAA 180

Query: 1091 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1150
            +        L      L+  LL+L LL  L  L L L L  L  LF  L      L L  
Sbjct: 181  IISRSLPRFLRSRIRRLVAQLLYLLLLGPLGGLLLALLLGELSGLFKELWEAFRALGLAH 240

Query: 1151 FL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1206
             L    L + L+   FL L   L          LL  L L + IL  F    L  L++  
Sbjct: 241  LLAISGLHVALLAGTFLFLLRRLGRWIGPALPLLLGLLALFYAILTGFSPSVLRALVMLA 300

Query: 1207 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1266
            L  L  L    L  + + L   + + LL    +L L   L  L +  ++    L  L  L
Sbjct: 301  LALLASLSLRNLSSIFILLLSAIAILLLAPLAILSLGFWLSFLAVAALILWSQLFRLLGL 360

Query: 1267 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1326
               L + L LL  L LL L      LL L L L+   L   + L  LL   +L   +   
Sbjct: 361  SWPLPITLALLATLPLLILQFGRLGLLGLLLNLIVSPLISLISLPGLLANFLLSPLVSFL 420

Query: 1327 LFLLLLFLFLLLLFLLSS 1344
            +  L+L   LL   L+ +
Sbjct: 421  IVPLILLGLLLAPLLIGA 438

Length = 453

>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein

 Score = 51.3 bits (123), Expect = 3e-06
 Identities = 74/315 (23%), Positives = 131/315 (41%), Gaps = 36/315 (11%)

Query: 1061 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP--LFLLLFLFLLLLFLLLFLFLL- 1117
            L  P ++LL + L  L LLL LF   F ++  L+ P  LF      LLLLFL +  + + 
Sbjct: 3    LHKPYWILLSITLPQL-LLLGLFYTSFDIIKGLLGPATLFTAFGGILLLLFLGIISYYVY 61

Query: 1118 -------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1170
                   +  +   L+L L++    F++ L+  L    +   ++  +  PL+ L  L   
Sbjct: 62   KKIREKNISKVYWLLLLGLYICFSYFMIALYENLIPSDIPDWMISSINFPLYPLYLLMPA 121

Query: 1171 LLFLLLFLFLLLFL----------LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1220
            + +L+L L                  + + +P F+  ++   ++ +      L  L+++F
Sbjct: 122  IFYLILDLAFKFTPSEKSRNNGINFAVAVSIPFFI--YVLANIILINGSFIGLNHLIMIF 179

Query: 1221 LILPLFLLLFLFLLLLFLLL-------FLFLLLFLLLLFLILPLFLLLF------LFLLL 1267
             I      LFL L  L++L+           LL ++L+ +I P+  L        +F   
Sbjct: 180  AIGATASFLFLILRFLYILITRRNLSFKNPELLIVILVGIIFPVLGLALNNNFGGIFGNF 239

Query: 1268 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1327
                 ++  +L  LLL L L   +LL L L       F ++L F ++   +LPL  +  +
Sbjct: 240  SSPWFYIIAILNGLLLLLPLQKNVLLRLILFYGKSAGFPYILYFFIVFLPLLPLGFIAII 299

Query: 1328 FLLLLFLFLLLLFLL 1342
               L FL L      
Sbjct: 300  IYGLGFLMLTPAVAF 314

Members of this protein family average over 900 residues in length and appear to have multiple membrane-spanning helices in the N-terminal half. The extreme C-terminal region consists of a motif with consensus sequence MSEP, then a transmembrane alpha helix, then a short region with several basic residues. This region, hereby dubbed MSEP-CTERM, resembles other putative sorting signals associated with the archaeosortase/exosortase protein family (see TIGR04178). Genes for all members of this family are found next to a gene for exosortase K. Length = 920

>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]

 Score = 51.3 bits (123), Expect = 4e-06
 Identities = 77/294 (26%), Positives = 113/294 (38%), Gaps = 18/294 (6%)

Query: 1096 PLFLLLFLFLLLLFLLLFLFLLLFLLLLF-LILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1154
            PLFL L   L L+   +F   L    LLF  IL +  ++ ++LL   +L     LL  LL
Sbjct: 89   PLFLYLTAALGLILGSIFPVSLETAALLFPAILGVLTVIPVYLLGRRILGDKTGLLAALL 148

Query: 1155 LFLILPLF---LLLFLFLLLLFLLLFLFLLLFLLLLFLIL------PLFLLLFLFLLLLF 1205
            L L        +  F    +  LLL LF L F LL            ++ LL    L L 
Sbjct: 149  LALAPGYLSRTVAGFYDTDMFELLLPLFALFFFLLALKAAKKLKKPVIYALLAGLALGLL 208

Query: 1206 LL-------LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL-ILPL 1257
             L       +   LLL+ L+L ++  L       L  + L+    L L +L   L     
Sbjct: 209  ALAWGGYYYILAILLLYALVLLVLAFLRGKKTDILGFVGLVTLTLLSLLILPPLLGFSGY 268

Query: 1258 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1317
            +   F  LL   +L  L LL  L+  F +   F  L    L L L+L   LL   LL   
Sbjct: 269  YYSGFSVLLGFIVLAVLGLLFSLVKNFELRKFFAYLVPLTLSLALILGGLLLFLELLRAY 328

Query: 1318 ILPLFLLLFLFLLLLFLFLLLLFLLSSFSSSSSSSFSYSSSSSSSSFSPLSPLF 1371
            ILP+   L++  L ++L    +   +        + +    ++      L  L 
Sbjct: 329  ILPISGRLYVGGLQVYLPFGTIAEAAPIFLPLGITNAALFGAAGFFALLLGILL 382

Length = 773

>gnl|CDD|177158 MTH00095, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 50.7 bits (122), Expect = 4e-06
 Identities = 105/527 (19%), Positives = 169/527 (32%), Gaps = 28/527 (5%)

Query: 843  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 902
            + + +FL+L F    L  +LFL  + L L      FL L   F    L   L LLL+ L 
Sbjct: 1    MNILIFLILFFFFFLLLFILFLPFMKLNLFFLEWDFLSLKFNFYFNSLLFSLILLLVTLS 60

Query: 903  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 962
            + +F   ++   L F   +  LL+F+  +F++     +  + L    L +  F L+    
Sbjct: 61   VLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLVLFYN 120

Query: 963  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1022
             +      +   L   +    +FLF   F+   +            +L+L L  F     
Sbjct: 121  NWDSNSGAMNTALTNRIGDFFIFLFFSGFIFSSYYFFSFSFFSSSMILMLLLTSFTKSAQ 180

Query: 1023 FLLLLFL-------------------ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1063
            F    +L                   +    +LL  F  L+  +  + ++L + L  +  
Sbjct: 181  FPFSSWLPKAMSAPTPVSSLVHSSTLVTAGLILLMNFSYLILNMNVMKIMLLIGLFTMFF 240

Query: 1064 PLFLLLF-------LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL--LFL 1114
                 L        + L  L  + F  L     L F+     L   LF   LF+     +
Sbjct: 241  SSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLI 300

Query: 1115 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1174
                             L     L L + LF    L      +   L L LF F   +  
Sbjct: 301  HSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIF 360

Query: 1175 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1234
               +F     L       L+   FL    +  +    +L+  L L L+      L+    
Sbjct: 361  FSLMFFFSVFLTFGYSYRLWKSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVFFLWWLNF 420

Query: 1235 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1294
             L  L  LFL L   +    L + +L   F   L      +          ++     L 
Sbjct: 421  NLLNLPSLFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLK 480

Query: 1295 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFL 1341
             F L L    +     F    F             LL+ LFL+ LFL
Sbjct: 481  FFDLFLNKFGYKGFNFFSSFSFFFFSYMKSFKYNSLLILLFLIFLFL 527

Length = 527

>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein

 Score = 51.3 bits (123), Expect = 4e-06
 Identities = 75/317 (23%), Positives = 134/317 (42%), Gaps = 36/317 (11%)

Query: 805  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP--LFLLLFLFLLLLFLLLFLFLL- 861
            L  P ++LL + L  L LLL LF   F ++  L+ P  LF      LLLLFL +  + + 
Sbjct: 3    LHKPYWILLSITLPQL-LLLGLFYTSFDIIKGLLGPATLFTAFGGILLLLFLGIISYYVY 61

Query: 862  -------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 914
                   +  +   L+L L++    F++ L+  L    +   ++  +  PL+ L  L   
Sbjct: 62   KKIREKNISKVYWLLLLGLYICFSYFMIALYENLIPSDIPDWMISSINFPLYPLYLLMPA 121

Query: 915  LLFLLLFLFLLLFL----------LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 964
            + +L+L L                  + + +P F+  ++   ++ +      L  L+++F
Sbjct: 122  IFYLILDLAFKFTPSEKSRNNGINFAVAVSIPFFI--YVLANIILINGSFIGLNHLIMIF 179

Query: 965  LILPLFLLLFLFLLLLFLLL-------FLFLLLFLLLLFLILPLFLLLF------LFLLL 1011
             I      LFL L  L++L+           LL ++L+ +I P+  L        +F   
Sbjct: 180  AIGATASFLFLILRFLYILITRRNLSFKNPELLIVILVGIIFPVLGLALNNNFGGIFGNF 239

Query: 1012 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1071
                 ++  +L  LLL L L   +LL L L       F ++L F ++   +LPL  +  +
Sbjct: 240  SSPWFYIIAILNGLLLLLPLQKNVLLRLILFYGKSAGFPYILYFFIVFLPLLPLGFIAII 299

Query: 1072 FLLLLFLLLFLFLLLFL 1088
               L FL+L   +   L
Sbjct: 300  IYGLGFLMLTPAVAFIL 316

Members of this protein family average over 900 residues in length and appear to have multiple membrane-spanning helices in the N-terminal half. The extreme C-terminal region consists of a motif with consensus sequence MSEP, then a transmembrane alpha helix, then a short region with several basic residues. This region, hereby dubbed MSEP-CTERM, resembles other putative sorting signals associated with the archaeosortase/exosortase protein family (see TIGR04178). Genes for all members of this family are found next to a gene for exosortase K. Length = 920

>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein

 Score = 51.3 bits (123), Expect = 4e-06
 Identities = 75/317 (23%), Positives = 134/317 (42%), Gaps = 36/317 (11%)

Query: 965  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP--LFLLLFLFLLLLFLLLFLFLL- 1021
            L  P ++LL + L  L LLL LF   F ++  L+ P  LF      LLLLFL +  + + 
Sbjct: 3    LHKPYWILLSITLPQL-LLLGLFYTSFDIIKGLLGPATLFTAFGGILLLLFLGIISYYVY 61

Query: 1022 -------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1074
                   +  +   L+L L++    F++ L+  L    +   ++  +  PL+ L  L   
Sbjct: 62   KKIREKNISKVYWLLLLGLYICFSYFMIALYENLIPSDIPDWMISSINFPLYPLYLLMPA 121

Query: 1075 LLFLLLFLFLLLFL----------LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1124
            + +L+L L                  + + +P F+  ++   ++ +      L  L+++F
Sbjct: 122  IFYLILDLAFKFTPSEKSRNNGINFAVAVSIPFFI--YVLANIILINGSFIGLNHLIMIF 179

Query: 1125 LILPLFLLLFLFLLLLFLLL-------FLFLLLFLLLLFLILPLFLLLF------LFLLL 1171
             I      LFL L  L++L+           LL ++L+ +I P+  L        +F   
Sbjct: 180  AIGATASFLFLILRFLYILITRRNLSFKNPELLIVILVGIIFPVLGLALNNNFGGIFGNF 239

Query: 1172 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1231
                 ++  +L  LLL L L   +LL L L       F ++L F ++   +LPL  +  +
Sbjct: 240  SSPWFYIIAILNGLLLLLPLQKNVLLRLILFYGKSAGFPYILYFFIVFLPLLPLGFIAII 299

Query: 1232 FLLLLFLLLFLFLLLFL 1248
               L FL+L   +   L
Sbjct: 300  IYGLGFLMLTPAVAFIL 316

Members of this protein family average over 900 residues in length and appear to have multiple membrane-spanning helices in the N-terminal half. The extreme C-terminal region consists of a motif with consensus sequence MSEP, then a transmembrane alpha helix, then a short region with several basic residues. This region, hereby dubbed MSEP-CTERM, resembles other putative sorting signals associated with the archaeosortase/exosortase protein family (see TIGR04178). Genes for all members of this family are found next to a gene for exosortase K. Length = 920

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 50.8 bits (122), Expect = 4e-06
 Identities = 88/346 (25%), Positives = 128/346 (36%), Gaps = 13/346 (3%)

Query: 975  LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1034
            LF  + F LL L   + L    L+    +L   +L  L + L   +   L     + PL 
Sbjct: 236  LFSSITFALLLLVGGMRLFSARLLRGPSVLSPSYLKRLLVALASTVGPLLADSQFLTPLA 295

Query: 1035 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1094
            +LL +   L   L +L L LFLLL F  +   L   L        LF+    F   L   
Sbjct: 296  ILLSILNALPLDLAWLALGLFLLLAFFFIARLLGAALTPTAPSWRLFMVCDRFAHFL--- 352

Query: 1095 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL-LFLFLLLLFLLLFLFLLLFLL 1153
            +P    + L   L+  L  +  LL   L+  +    L    +  L +   L    LL   
Sbjct: 353  MPREQAMALRRGLVRSLGAINPLLGAPLVLTVADDGLASDVIGQLGIIAALLAPALLVAR 412

Query: 1154 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1213
            L       +  L L  +L    L L +      L+        LFL L L+  +  LF  
Sbjct: 413  LKDAAWRAYPRLLLITVLSAAPLALIVAALTGYLYTA------LFLALRLVVTVAILFTW 466

Query: 1214 LFLLLLFLILPL-FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1272
              L +L  +      L F   L    L     L+ + L  + L L  L+ L LLL+ + L
Sbjct: 467  YVLYILRGLSVSARRLAFARALAGRALAEEAELVEVALDQIGLQLLRLIRLLLLLIAIPL 526

Query: 1273 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1318
             L++    L    I     L     +L    + L  LL  +LLFLI
Sbjct: 527  VLYVWGSYLE--DITLWAYLGTTGGVLGVESITLGALLQAVLLFLI 570

Length = 835

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 50.5 bits (122), Expect = 5e-06
 Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 13/201 (6%)

Query: 816  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 875
             L  LF+LLFL  L FL   + ++   L L  FL +L   L  +         L L  F 
Sbjct: 1    MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFG 60

Query: 876  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 935
            L+ L   +  L++     ++    +  L LFL+LFL + LL     + LLLF +     L
Sbjct: 61   LILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSL 120

Query: 936  -PLFLLLFLF----------LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 984
             P   L+  +          + LLF  LF   L  L+ +F +      L  FLL  F  L
Sbjct: 121  IPTLFLILGWGYQPERLQAGIYLLFYTLF-ASLPLLVGIFYLYNNSGSLSFFLLNFFGSL 179

Query: 985  FLFLLLFLLLLFLI-LPLFLL 1004
                 L ++L FL+ +P+F +
Sbjct: 180  NFLWYLSMILAFLVKMPMFFV 200

Length = 445

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 50.5 bits (122), Expect = 5e-06
 Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 13/201 (6%)

Query: 976  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1035
             L  LF+LLFL  L FL   + ++   L L  FL +L   L  +         L L  F 
Sbjct: 1    MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFG 60

Query: 1036 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1095
            L+ L   +  L++     ++    +  L LFL+LFL + LL     + LLLF +     L
Sbjct: 61   LILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSL 120

Query: 1096 -PLFLLLFLF----------LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1144
             P   L+  +          + LLF  LF   L  L+ +F +      L  FLL  F  L
Sbjct: 121  IPTLFLILGWGYQPERLQAGIYLLFYTLF-ASLPLLVGIFYLYNNSGSLSFFLLNFFGSL 179

Query: 1145 FLFLLLFLLLLFLI-LPLFLL 1164
                 L ++L FL+ +P+F +
Sbjct: 180  NFLWYLSMILAFLVKMPMFFV 200

Length = 445

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 50.5 bits (122), Expect = 5e-06
 Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 13/201 (6%)

Query: 1136 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1195
             L  LF+LLFL  L FL   + ++   L L  FL +L   L  +         L L  F 
Sbjct: 1    MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFG 60

Query: 1196 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1255
            L+ L   +  L++     ++    +  L LFL+LFL + LL     + LLLF +     L
Sbjct: 61   LILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSL 120

Query: 1256 -PLFLLLFLF----------LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1304
             P   L+  +          + LLF  LF   L  L+ +F +      L  FLL  F  L
Sbjct: 121  IPTLFLILGWGYQPERLQAGIYLLFYTLF-ASLPLLVGIFYLYNNSGSLSFFLLNFFGSL 179

Query: 1305 FLFLLLFLLLLFLI-LPLFLL 1324
                 L ++L FL+ +P+F +
Sbjct: 180  NFLWYLSMILAFLVKMPMFFV 200

Length = 445

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 50.8 bits (122), Expect = 5e-06
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 812 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LLFLLLFLF--------- 859
           +L+L    +  +L L +     L FL L    LL++ LL   L  L L +          
Sbjct: 705 ILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKR 764

Query: 860 --------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 911
                   L    +    IL + LL  +  +L FLL  L  +   L L L   L      
Sbjct: 765 PPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAF 824

Query: 912 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 971
            +L+L  LL    +      FL   LF   +L+L LL +++   L++FL  L L +    
Sbjct: 825 TVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884

Query: 972 LLFLFLLLLFLLLFLFLLLFLLLLFLIL 999
            L LF  L+ + + L LL  ++     L
Sbjct: 885 PLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 50.8 bits (122), Expect = 5e-06
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 844  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LLFLLLFLF--------- 891
            +L+L    +  +L L +     L FL L    LL++ LL   L  L L +          
Sbjct: 705  ILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKR 764

Query: 892  --------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 943
                    L    +    IL + LL  +  +L FLL  L  +   L L L   L      
Sbjct: 765  PPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAF 824

Query: 944  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1003
             +L+L  LL    +      FL   LF   +L+L LL +++   L++FL  L L +    
Sbjct: 825  TVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884

Query: 1004 LLFLFLLLLFLLLFLFLLLFLLLLFLIL 1031
             L LF  L+ + + L LL  ++     L
Sbjct: 885  PLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 50.8 bits (122), Expect = 5e-06
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 876  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LLFLLLFLF--------- 923
            +L+L    +  +L L +     L FL L    LL++ LL   L  L L +          
Sbjct: 705  ILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKR 764

Query: 924  --------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 975
                    L    +    IL + LL  +  +L FLL  L  +   L L L   L      
Sbjct: 765  PPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAF 824

Query: 976  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1035
             +L+L  LL    +      FL   LF   +L+L LL +++   L++FL  L L +    
Sbjct: 825  TVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884

Query: 1036 LLFLFLLLLFLLLFLFLLLFLLLLFLIL 1063
             L LF  L+ + + L LL  ++     L
Sbjct: 885  PLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 50.8 bits (122), Expect = 5e-06
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 908  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LLFLLLFLF--------- 955
            +L+L    +  +L L +     L FL L    LL++ LL   L  L L +          
Sbjct: 705  ILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKR 764

Query: 956  --------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1007
                    L    +    IL + LL  +  +L FLL  L  +   L L L   L      
Sbjct: 765  PPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAF 824

Query: 1008 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1067
             +L+L  LL    +      FL   LF   +L+L LL +++   L++FL  L L +    
Sbjct: 825  TVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884

Query: 1068 LLFLFLLLLFLLLFLFLLLFLLLLFLIL 1095
             L LF  L+ + + L LL  ++     L
Sbjct: 885  PLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 50.8 bits (122), Expect = 5e-06
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 940  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LLFLLLFLF--------- 987
            +L+L    +  +L L +     L FL L    LL++ LL   L  L L +          
Sbjct: 705  ILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKR 764

Query: 988  --------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1039
                    L    +    IL + LL  +  +L FLL  L  +   L L L   L      
Sbjct: 765  PPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAF 824

Query: 1040 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1099
             +L+L  LL    +      FL   LF   +L+L LL +++   L++FL  L L +    
Sbjct: 825  TVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884

Query: 1100 LLFLFLLLLFLLLFLFLLLFLLLLFLIL 1127
             L LF  L+ + + L LL  ++     L
Sbjct: 885  PLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 50.8 bits (122), Expect = 5e-06
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 972  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LLFLLLFLF--------- 1019
            +L+L    +  +L L +     L FL L    LL++ LL   L  L L +          
Sbjct: 705  ILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKR 764

Query: 1020 --------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1071
                    L    +    IL + LL  +  +L FLL  L  +   L L L   L      
Sbjct: 765  PPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAF 824

Query: 1072 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1131
             +L+L  LL    +      FL   LF   +L+L LL +++   L++FL  L L +    
Sbjct: 825  TVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884

Query: 1132 LLFLFLLLLFLLLFLFLLLFLLLLFLIL 1159
             L LF  L+ + + L LL  ++     L
Sbjct: 885  PLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 50.8 bits (122), Expect = 5e-06
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 1004 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LLFLLLFLF--------- 1051
            +L+L    +  +L L +     L FL L    LL++ LL   L  L L +          
Sbjct: 705  ILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKR 764

Query: 1052 --------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1103
                    L    +    IL + LL  +  +L FLL  L  +   L L L   L      
Sbjct: 765  PPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAF 824

Query: 1104 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1163
             +L+L  LL    +      FL   LF   +L+L LL +++   L++FL  L L +    
Sbjct: 825  TVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884

Query: 1164 LLFLFLLLLFLLLFLFLLLFLLLLFLIL 1191
             L LF  L+ + + L LL  ++     L
Sbjct: 885  PLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 50.8 bits (122), Expect = 5e-06
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 1036 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LLFLLLFLF--------- 1083
            +L+L    +  +L L +     L FL L    LL++ LL   L  L L +          
Sbjct: 705  ILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKR 764

Query: 1084 --------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1135
                    L    +    IL + LL  +  +L FLL  L  +   L L L   L      
Sbjct: 765  PPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAF 824

Query: 1136 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1195
             +L+L  LL    +      FL   LF   +L+L LL +++   L++FL  L L +    
Sbjct: 825  TVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884

Query: 1196 LLFLFLLLLFLLLFLFLLLFLLLLFLIL 1223
             L LF  L+ + + L LL  ++     L
Sbjct: 885  PLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 50.8 bits (122), Expect = 5e-06
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 1068 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LLFLLLFLF--------- 1115
            +L+L    +  +L L +     L FL L    LL++ LL   L  L L +          
Sbjct: 705  ILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKR 764

Query: 1116 --------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1167
                    L    +    IL + LL  +  +L FLL  L  +   L L L   L      
Sbjct: 765  PPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAF 824

Query: 1168 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1227
             +L+L  LL    +      FL   LF   +L+L LL +++   L++FL  L L +    
Sbjct: 825  TVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884

Query: 1228 LLFLFLLLLFLLLFLFLLLFLLLLFLIL 1255
             L LF  L+ + + L LL  ++     L
Sbjct: 885  PLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 50.8 bits (122), Expect = 5e-06
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 1100 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LLFLLLFLF--------- 1147
            +L+L    +  +L L +     L FL L    LL++ LL   L  L L +          
Sbjct: 705  ILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKR 764

Query: 1148 --------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1199
                    L    +    IL + LL  +  +L FLL  L  +   L L L   L      
Sbjct: 765  PPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAF 824

Query: 1200 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1259
             +L+L  LL    +      FL   LF   +L+L LL +++   L++FL  L L +    
Sbjct: 825  TVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884

Query: 1260 LLFLFLLLLFLLLFLFLLLFLLLLFLIL 1287
             L LF  L+ + + L LL  ++     L
Sbjct: 885  PLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 50.8 bits (122), Expect = 5e-06
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 1132 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LLFLLLFLF--------- 1179
            +L+L    +  +L L +     L FL L    LL++ LL   L  L L +          
Sbjct: 705  ILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKR 764

Query: 1180 --------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1231
                    L    +    IL + LL  +  +L FLL  L  +   L L L   L      
Sbjct: 765  PPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAF 824

Query: 1232 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1291
             +L+L  LL    +      FL   LF   +L+L LL +++   L++FL  L L +    
Sbjct: 825  TVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884

Query: 1292 LLFLFLLLLFLLLFLFLLLFLLLLFLIL 1319
             L LF  L+ + + L LL  ++     L
Sbjct: 885  PLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 49.8 bits (120), Expect = 7e-06
 Identities = 64/206 (31%), Positives = 85/206 (41%), Gaps = 20/206 (9%)

Query: 791 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 850
           L FLF+LLFL+ L         L     L+  LLFL   LF+LL  L      + + F L
Sbjct: 2   LKFLFMLLFLIPLC-------FLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGL 54

Query: 851 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 910
            L     + L  ++ +L ++    +        LFL L LFLL+FLLL F  + L L   
Sbjct: 55  DLLSFGLILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYI 114

Query: 911 LFLLLLFLLLFLFLL-------------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 957
            F   L   LFL L              L    LF  LPL + +F        L F  L 
Sbjct: 115 FFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLN 174

Query: 958 LFLLLLFLILPLFLLLFLFLLLLFLL 983
            F  L FL     +L FL  + +F +
Sbjct: 175 FFGSLNFLWYLSMILAFLVKMPMFFV 200

Length = 445

>gnl|CDD|224748 COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]

 Score = 49.8 bits (119), Expect = 7e-06
 Identities = 74/263 (28%), Positives = 93/263 (35%), Gaps = 8/263 (3%)

Query: 783  LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL-LLFLILPL 841
              L++L L   L L L        L   L    +L  L L L +        LL  +L L
Sbjct: 93   ALLVVLLLTAALLLALLPPGASAALWADLAALFYLSNLLLTLAVGAYFAASGLLSPLLHL 152

Query: 842  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 901
            + L       L   L L LL  +     +L L L L  F LLL L  F            
Sbjct: 153  WSLSVEEQFYLLFPLLLLLLRRVRFALALLLLLLALASFFLLLALGPFATGAALYYGTAT 212

Query: 902  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 961
             L  FLL  L  L          LL   L  L L L LL    +          LLL   
Sbjct: 213  RLWEFLLGALAALWRPKRRPWPALLAAALALLGLALLLLAVALIPGSSPFFPGDLLLVPS 272

Query: 962  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL----LFLILPLFLLLFLFLLLLFLLLF 1017
            L   +L   +L    L+    LL    L+FL      L+L     L+  L+L+ L  L  
Sbjct: 273  LGAALL---VLAVAALVGGSRLLSSRPLVFLGDISYSLYLWHWPVLVFLLYLVGLSGLPI 329

Query: 1018 LFLLLFLLLLFLILPLFLLLFLF 1040
              LLL L  L L + L  L + F
Sbjct: 330  SALLLILAALALSILLAALSYRF 352

Length = 386

>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein

 Score = 50.5 bits (121), Expect = 7e-06
 Identities = 70/317 (22%), Positives = 129/317 (40%), Gaps = 36/317 (11%)

Query: 837  LILPLFLLLFLFLLLLFLLLFLFLLLFLL---LLFLILPLFLLLFLFLLLLFLLLFLFLL 893
            L  P ++LL + L  L LLL LF   F +   LL           + LLL   ++  ++ 
Sbjct: 3    LHKPYWILLSITLPQL-LLLGLFYTSFDIIKGLLGPATLFTAFGGILLLLFLGIISYYVY 61

Query: 894  -------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 946
                   +  +   L+L L++    F++ L+  L    +   ++  +  PL+ L  L   
Sbjct: 62   KKIREKNISKVYWLLLLGLYICFSYFMIALYENLIPSDIPDWMISSINFPLYPLYLLMPA 121

Query: 947  LLFLLLFLFLLLFL----------LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 996
            + +L+L L                  + + +P F  +++   ++ +      L  L+++F
Sbjct: 122  IFYLILDLAFKFTPSEKSRNNGINFAVAVSIPFF--IYVLANIILINGSFIGLNHLIMIF 179

Query: 997  LILPLFLLLFLFLLLLFLLL-------FLFLLLFLLLLFLILPLFLLLF------LFLLL 1043
             I      LFL L  L++L+           LL ++L+ +I P+  L        +F   
Sbjct: 180  AIGATASFLFLILRFLYILITRRNLSFKNPELLIVILVGIIFPVLGLALNNNFGGIFGNF 239

Query: 1044 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1103
                 ++  +L  LLL L L   +LL L L       F ++L F ++   +LPL  +  +
Sbjct: 240  SSPWFYIIAILNGLLLLLPLQKNVLLRLILFYGKSAGFPYILYFFIVFLPLLPLGFIAII 299

Query: 1104 FLLLLFLLLFLFLLLFL 1120
               L FL+L   +   L
Sbjct: 300  IYGLGFLMLTPAVAFIL 316

Members of this protein family average over 900 residues in length and appear to have multiple membrane-spanning helices in the N-terminal half. The extreme C-terminal region consists of a motif with consensus sequence MSEP, then a transmembrane alpha helix, then a short region with several basic residues. This region, hereby dubbed MSEP-CTERM, resembles other putative sorting signals associated with the archaeosortase/exosortase protein family (see TIGR04178). Genes for all members of this family are found next to a gene for exosortase K. Length = 920

>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]

 Score = 49.7 bits (119), Expect = 8e-06
 Identities = 41/131 (31%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 773 SDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF--LLLLFLLLFLFLLL 830
           S  I F++  L LLLLF  +    +  L+L  LI  L +L  LF    + FL +   LL+
Sbjct: 57  SLPILFIVSLLLLLLLFKGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLI 116

Query: 831 FLLLL----FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 886
               L    F  L L     +  ++  +LL L L+ +  L  L   L  L    L+L  L
Sbjct: 117 EDFNLGKLGFSALSLLYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALL 176

Query: 887 LLFLFLLLFLL 897
           L     LLFL 
Sbjct: 177 LYLFLQLLFLG 187

Length = 650

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 50.4 bits (121), Expect = 8e-06
 Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 22/211 (10%)

Query: 1164 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL---LLFLLLFLF--------- 1211
            +L+L    +  +L L +     L FL L    LL++ LL   L  L L +          
Sbjct: 705  ILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKR 764

Query: 1212 --------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1263
                    L    +    IL + LL  +  +L FLL  L  +   L L L   L      
Sbjct: 765  PPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAF 824

Query: 1264 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL--PL 1321
             +L+L  LL    +      FL   LF   +L+L LL +++   L++FL  L L +  P 
Sbjct: 825  TVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPT 884

Query: 1322 FLLLFLFLLLLFLFLLLLFLLSSFSSSSSSS 1352
             L LF +L+ + + LLLL+++ S      S 
Sbjct: 885  PLSLFEWLIAIAVALLLLYIVVSELYKLKSR 915

Length = 917

>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]

 Score = 49.4 bits (118), Expect = 9e-06
 Identities = 94/273 (34%), Positives = 119/273 (43%), Gaps = 3/273 (1%)

Query: 1068 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1127
            +   FL+L    L   L    +   + L + L     L    L+L   LL  LLLL L L
Sbjct: 1    MSVPFLILALSFLIPKLGALWIAALVFLFISLAFLAGLGSTILILAALLLALLLLLLLFL 60

Query: 1128 PLFLLLFLFLLLLFLLLFLFLLLFLLLLF--LILPLFLLLFLFLLLLFLLLFLFLLLFLL 1185
            P+   L L LL L L L L LLL L LLF  L     +LL   +LLL L   L L + L 
Sbjct: 61   PVAFKLLLSLLNLLLFLRLLLLLLLWLLFSSLSAGAPILLLATILLLLLTARLLLFISLF 120

Query: 1186 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1245
             L L   + LL+ L  +LL LLL L L         +  L+ +L ++    +    +   
Sbjct: 121  ALLLNGRILLLVLLGSVLLGLLLALGLAGAGAEELALANLWRVLGVYAFKNYAGSLMAAA 180

Query: 1246 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1305
            L    L L + L   L   LL    LL   LL     L  +L L LLL LFL+LL L   
Sbjct: 181  LLFPALLLWI-LGSWLLGTLLAALALLIALLLTGSRSLAALLALILLLALFLVLLLLRRV 239

Query: 1306 LFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLL 1338
            L L L   LL LIL   + + LF  L  L   L
Sbjct: 240  LLLGLLAALLALILIALVGIELFEPLELLLARL 272

Length = 424

>gnl|CDD|226888 COG4485, COG4485, Predicted membrane protein [Function unknown]

 Score = 49.8 bits (119), Expect = 9e-06
 Identities = 71/349 (20%), Positives = 130/349 (37%), Gaps = 48/349 (13%)

Query: 770  ITQSDAISFLLLFLFLLLLFLLLFLFLLLFLL---LLFLILPLFLLLFLFLLLLFLLLFL 826
             +  DAI    L  F L+       F++LF     LL L +  F  L  F +   L ++ 
Sbjct: 99   TSMPDAIYLPTLIKFGLIGLSAFISFVVLFQKFSILLKLRISTFYALMSFGVSQ-LEIYT 157

Query: 827  FLLLFLLLLFLILPLFLLL--------FLFLLLLFLLLFLF---LLLFLLLLFLILPLFL 875
            +L +F+LL  +IL L  L+         + + LLF+  + F     +F+ L +L      
Sbjct: 158  WLDVFILLPLIILGLERLITERKIGLYIVSISLLFIQNYYFGYMQAIFIGLYYLFWLRER 217

Query: 876  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL--------------LLLFLLLF 921
                  + +       +   L    ++LP    LF                  L  +   
Sbjct: 218  DEKKRWIDIVDFTVSSICAGLASALMVLPTVFDLFTHGEALSENDRKQTENSWLFDIPAK 277

Query: 922  LFLLLFLLLLFLILPLFLL-LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 980
             F+  +    F  +P+  + +F   L++ L     +   +  LF  L  F ++  +   L
Sbjct: 278  NFIGPYDTTKFNAIPMIYVGIFPLALIVLLFTLKSIRFRVKRLFAGLTAFFIISFYSQYL 337

Query: 981  ------------FLLLFLFLLLFLLLLFLILPLFLL------LFLFLLLLFLLLFLFLLL 1022
                        FL  + ++   L+ L     L  L        L  + + +L FL++LL
Sbjct: 338  DLFWQGMHSPNMFLHRYAYIFSLLISLLAAETLSRLSELKKKYLLRTIFVVILGFLYILL 397

Query: 1023 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1071
                 FL +   +LL L L++  L L+ F    + +L  I+ +   + +
Sbjct: 398  SPHYPFLPIVGIILLLLLLVIYKLSLWAFKKKTISILVFIIIILQFVLV 446

Length = 858

>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1)

 Score = 49.2 bits (117), Expect = 9e-06
 Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 24/164 (14%)

Query: 773 SDAISFLLLFLFLLLLFLLLFL--------FLLLFLLLLFLILPLFLLLFLFLLLLFLLL 824
           S +I   LL L L LLF L  +         L+L+   L LI+ + ++      LL  L 
Sbjct: 22  SSSIGLALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPLG 81

Query: 825 FLFLLLFLLLLFLI---------LPLFLLLFLFLLLLFLLLFLFLLLFLLLL----FLIL 871
            L LLL ++ L LI         L L ++LF+F  LL L L+++LL  L  L    + +L
Sbjct: 82  ALCLLLLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLL 141

Query: 872 PLFLLLFLFLLLLFLLLFL---FLLLFLLLLFLILPLFLLLFLF 912
             FL  FL ++LL + L+L   +  L + LL+L+L L +L++++
Sbjct: 142 AFFLAFFLAIILLIIALYLQQNWWTLLVDLLWLLLFLAILIWMY 185

This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys. Length = 382

>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein

 Score = 50.1 bits (120), Expect = 9e-06
 Identities = 71/309 (22%), Positives = 124/309 (40%), Gaps = 56/309 (18%)

Query: 802  LLFLILPLFLLLFLFL--------LLLFLLLFLFLLLFLLLLFLILPLF----------- 842
            LL + LP  LLL LF         LL    LF      LLLLFL +  +           
Sbjct: 10   LLSITLPQLLLLGLFYTSFDIIKGLLGPATLFTAFGGILLLLFLGIISYYVYKKIREKNI 69

Query: 843  LLLFLFLLLLFLLLFLFLLLFLL--LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL-- 898
              ++  LLL   + F + ++ L   L+   +P +++  +   L  L L +  + +L+L  
Sbjct: 70   SKVYWLLLLGLYICFSYFMIALYENLIPSDIPDWMISSINFPLYPLYLLMPAIFYLILDL 129

Query: 899  ------------------LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 940
                              + + +P F  +++   ++ +      L  L+++F I      
Sbjct: 130  AFKFTPSEKSRNNGINFAVAVSIPFF--IYVLANIILINGSFIGLNHLIMIFAIGATASF 187

Query: 941  LFLFLLLLFLLL-------FLFLLLFLLLLFLILPLFLLLF------LFLLLLFLLLFLF 987
            LFL L  L++L+           LL ++L+ +I P+  L        +F        ++ 
Sbjct: 188  LFLILRFLYILITRRNLSFKNPELLIVILVGIIFPVLGLALNNNFGGIFGNFSSPWFYII 247

Query: 988  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1047
             +L  LLL L L   +LL L L       F ++L F ++   +LPL  +  +   L FL+
Sbjct: 248  AILNGLLLLLPLQKNVLLRLILFYGKSAGFPYILYFFIVFLPLLPLGFIAIIIYGLGFLM 307

Query: 1048 LFLFLLLFL 1056
            L   +   L
Sbjct: 308  LTPAVAFIL 316

Members of this protein family average over 900 residues in length and appear to have multiple membrane-spanning helices in the N-terminal half. The extreme C-terminal region consists of a motif with consensus sequence MSEP, then a transmembrane alpha helix, then a short region with several basic residues. This region, hereby dubbed MSEP-CTERM, resembles other putative sorting signals associated with the archaeosortase/exosortase protein family (see TIGR04178). Genes for all members of this family are found next to a gene for exosortase K. Length = 920

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 49.9 bits (120), Expect = 1e-05
 Identities = 77/286 (26%), Positives = 101/286 (35%), Gaps = 59/286 (20%)

Query: 775  AISFLLLFLFLLLL-------------FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 821
            AI  LLL L  LL              +L +F   LL  + LFL++ L   LFLFL LL 
Sbjct: 10   AIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIFFLFLFLNLLL 69

Query: 822  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 881
                    + L       PL     + L    LLL    L+  LL  L            
Sbjct: 70   AYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVLGLLAGLS----ASSRWET 125

Query: 882  LLLFLL----------------LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 925
            +LLFL                  +LF L FL LL     L  LL L LL L   L  + L
Sbjct: 126  VLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELL-----LSWLLALLLLALIATLLTYYL 180

Query: 926  ---LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL---LLLF--------------- 964
               + L   F  L       L +LL    L      +L    LL+               
Sbjct: 181  YGGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELLYSGRGVVTGAGYTDVH 240

Query: 965  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1010
             +LP +L+L +  LL+ +L F  +      L  I    L++   LL
Sbjct: 241  AVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAILL 286

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 49.7 bits (119), Expect = 1e-05
 Identities = 55/191 (28%), Positives = 75/191 (39%), Gaps = 4/191 (2%)

Query: 768 AIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 827
             +       + L +  L  L  L+      +  L       FL  F F L  F  L   
Sbjct: 28  FALAFPPPDWWWLAWFSLAPLLWLVRGAPTSWEGLAKS---GFLFGFGFFLAGFYWLGTS 84

Query: 828 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 887
           L + L LL + LPL +LL    L LFLLL   L   L    L++P   +   +L    L 
Sbjct: 85  LGVGLGLLAVALPLLVLLLAAWLALFLLLVAVLTCRLWFALLVVPSAWVAAEWLRGWSLT 144

Query: 888 LFLFLLL-FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 946
            F +LLL +       L     L    LL FL++ +  LL  +LL       LLL   LL
Sbjct: 145 GFPWLLLGYSQWSPSPLLQLASLGGVWLLSFLVVAVNALLASVLLKRATGGRLLLLGLLL 204

Query: 947 LLFLLLFLFLL 957
           ++ L     LL
Sbjct: 205 VVLLAYGCALL 215

Length = 518

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 49.7 bits (119), Expect = 1e-05
 Identities = 53/253 (20%), Positives = 94/253 (37%), Gaps = 8/253 (3%)

Query: 792  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 851
            L +FL L +L  +L+        +   +L  L    + L      + L +  LLF+  LL
Sbjct: 152  LAIFLPLLVLFFWLLAIKTGSNRIIYAVLAGLPLFLMALAWGGYQVFLLILALLFILALL 211

Query: 852  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 911
            +       LL+ +   +LI  +   +  +L + F  +     +   L+F +  L      
Sbjct: 212  IMGRFEPKLLILVGFSYLIATIVGGIIQYLFVGFAKVRSSEHMGAFLVFGLAQLLAFG-S 270

Query: 912  FLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 968
             +  ++L  + F  L    LFL+L      L L   L  + L    F  LF      I  
Sbjct: 271  VVKGVYLSFYQFETLTYPGLFLVLGLIGPVLFLLGLLGFIALWTGRFYSLFDYAKIDIPT 330

Query: 969  LFLLLF---LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL-LLFL 1024
            + L+       L  L   L   +  F L L     L   L +F  +  +    FL ++  
Sbjct: 331  IILISEWQPTGLYALLAGLRFLIFTFPLGLIFCGLLLEDLAVFSFIYSVSQLRFLGVMVF 390

Query: 1025 LLLFLILPLFLLL 1037
             ++  + P+  L+
Sbjct: 391  PIMLTLAPVIALI 403

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 49.7 bits (119), Expect = 1e-05
 Identities = 53/253 (20%), Positives = 94/253 (37%), Gaps = 8/253 (3%)

Query: 824  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 883
            L +FL L +L  +L+        +   +L  L    + L      + L +  LLF+  LL
Sbjct: 152  LAIFLPLLVLFFWLLAIKTGSNRIIYAVLAGLPLFLMALAWGGYQVFLLILALLFILALL 211

Query: 884  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 943
            +       LL+ +   +LI  +   +  +L + F  +     +   L+F +  L      
Sbjct: 212  IMGRFEPKLLILVGFSYLIATIVGGIIQYLFVGFAKVRSSEHMGAFLVFGLAQLLAFG-S 270

Query: 944  FLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1000
             +  ++L  + F  L    LFL+L      L L   L  + L    F  LF      I  
Sbjct: 271  VVKGVYLSFYQFETLTYPGLFLVLGLIGPVLFLLGLLGFIALWTGRFYSLFDYAKIDIPT 330

Query: 1001 LFLLLF---LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL-LLFL 1056
            + L+       L  L   L   +  F L L     L   L +F  +  +    FL ++  
Sbjct: 331  IILISEWQPTGLYALLAGLRFLIFTFPLGLIFCGLLLEDLAVFSFIYSVSQLRFLGVMVF 390

Query: 1057 LLLFLILPLFLLL 1069
             ++  + P+  L+
Sbjct: 391  PIMLTLAPVIALI 403

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 49.7 bits (119), Expect = 1e-05
 Identities = 53/253 (20%), Positives = 94/253 (37%), Gaps = 8/253 (3%)

Query: 856  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 915
            L +FL L +L  +L+        +   +L  L    + L      + L +  LLF+  LL
Sbjct: 152  LAIFLPLLVLFFWLLAIKTGSNRIIYAVLAGLPLFLMALAWGGYQVFLLILALLFILALL 211

Query: 916  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 975
            +       LL+ +   +LI  +   +  +L + F  +     +   L+F +  L      
Sbjct: 212  IMGRFEPKLLILVGFSYLIATIVGGIIQYLFVGFAKVRSSEHMGAFLVFGLAQLLAFG-S 270

Query: 976  FLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1032
             +  ++L  + F  L    LFL+L      L L   L  + L    F  LF      I  
Sbjct: 271  VVKGVYLSFYQFETLTYPGLFLVLGLIGPVLFLLGLLGFIALWTGRFYSLFDYAKIDIPT 330

Query: 1033 LFLLLF---LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL-LLFL 1088
            + L+       L  L   L   +  F L L     L   L +F  +  +    FL ++  
Sbjct: 331  IILISEWQPTGLYALLAGLRFLIFTFPLGLIFCGLLLEDLAVFSFIYSVSQLRFLGVMVF 390

Query: 1089 LLLFLILPLFLLL 1101
             ++  + P+  L+
Sbjct: 391  PIMLTLAPVIALI 403

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 49.7 bits (119), Expect = 1e-05
 Identities = 53/253 (20%), Positives = 94/253 (37%), Gaps = 8/253 (3%)

Query: 888  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 947
            L +FL L +L  +L+        +   +L  L    + L      + L +  LLF+  LL
Sbjct: 152  LAIFLPLLVLFFWLLAIKTGSNRIIYAVLAGLPLFLMALAWGGYQVFLLILALLFILALL 211

Query: 948  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1007
            +       LL+ +   +LI  +   +  +L + F  +     +   L+F +  L      
Sbjct: 212  IMGRFEPKLLILVGFSYLIATIVGGIIQYLFVGFAKVRSSEHMGAFLVFGLAQLLAFG-S 270

Query: 1008 FLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1064
             +  ++L  + F  L    LFL+L      L L   L  + L    F  LF      I  
Sbjct: 271  VVKGVYLSFYQFETLTYPGLFLVLGLIGPVLFLLGLLGFIALWTGRFYSLFDYAKIDIPT 330

Query: 1065 LFLLLF---LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL-LLFL 1120
            + L+       L  L   L   +  F L L     L   L +F  +  +    FL ++  
Sbjct: 331  IILISEWQPTGLYALLAGLRFLIFTFPLGLIFCGLLLEDLAVFSFIYSVSQLRFLGVMVF 390

Query: 1121 LLLFLILPLFLLL 1133
             ++  + P+  L+
Sbjct: 391  PIMLTLAPVIALI 403

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 49.7 bits (119), Expect = 1e-05
 Identities = 53/253 (20%), Positives = 94/253 (37%), Gaps = 8/253 (3%)

Query: 920  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 979
            L +FL L +L  +L+        +   +L  L    + L      + L +  LLF+  LL
Sbjct: 152  LAIFLPLLVLFFWLLAIKTGSNRIIYAVLAGLPLFLMALAWGGYQVFLLILALLFILALL 211

Query: 980  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1039
            +       LL+ +   +LI  +   +  +L + F  +     +   L+F +  L      
Sbjct: 212  IMGRFEPKLLILVGFSYLIATIVGGIIQYLFVGFAKVRSSEHMGAFLVFGLAQLLAFG-S 270

Query: 1040 FLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1096
             +  ++L  + F  L    LFL+L      L L   L  + L    F  LF      I  
Sbjct: 271  VVKGVYLSFYQFETLTYPGLFLVLGLIGPVLFLLGLLGFIALWTGRFYSLFDYAKIDIPT 330

Query: 1097 LFLLLF---LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL-LLFL 1152
            + L+       L  L   L   +  F L L     L   L +F  +  +    FL ++  
Sbjct: 331  IILISEWQPTGLYALLAGLRFLIFTFPLGLIFCGLLLEDLAVFSFIYSVSQLRFLGVMVF 390

Query: 1153 LLLFLILPLFLLL 1165
             ++  + P+  L+
Sbjct: 391  PIMLTLAPVIALI 403

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 49.7 bits (119), Expect = 1e-05
 Identities = 53/253 (20%), Positives = 94/253 (37%), Gaps = 8/253 (3%)

Query: 952  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1011
            L +FL L +L  +L+        +   +L  L    + L      + L +  LLF+  LL
Sbjct: 152  LAIFLPLLVLFFWLLAIKTGSNRIIYAVLAGLPLFLMALAWGGYQVFLLILALLFILALL 211

Query: 1012 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1071
            +       LL+ +   +LI  +   +  +L + F  +     +   L+F +  L      
Sbjct: 212  IMGRFEPKLLILVGFSYLIATIVGGIIQYLFVGFAKVRSSEHMGAFLVFGLAQLLAFG-S 270

Query: 1072 FLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1128
             +  ++L  + F  L    LFL+L      L L   L  + L    F  LF      I  
Sbjct: 271  VVKGVYLSFYQFETLTYPGLFLVLGLIGPVLFLLGLLGFIALWTGRFYSLFDYAKIDIPT 330

Query: 1129 LFLLLF---LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL-LLFL 1184
            + L+       L  L   L   +  F L L     L   L +F  +  +    FL ++  
Sbjct: 331  IILISEWQPTGLYALLAGLRFLIFTFPLGLIFCGLLLEDLAVFSFIYSVSQLRFLGVMVF 390

Query: 1185 LLLFLILPLFLLL 1197
             ++  + P+  L+
Sbjct: 391  PIMLTLAPVIALI 403

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 49.7 bits (119), Expect = 1e-05
 Identities = 53/253 (20%), Positives = 94/253 (37%), Gaps = 8/253 (3%)

Query: 984  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1043
            L +FL L +L  +L+        +   +L  L    + L      + L +  LLF+  LL
Sbjct: 152  LAIFLPLLVLFFWLLAIKTGSNRIIYAVLAGLPLFLMALAWGGYQVFLLILALLFILALL 211

Query: 1044 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1103
            +       LL+ +   +LI  +   +  +L + F  +     +   L+F +  L      
Sbjct: 212  IMGRFEPKLLILVGFSYLIATIVGGIIQYLFVGFAKVRSSEHMGAFLVFGLAQLLAFG-S 270

Query: 1104 FLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1160
             +  ++L  + F  L    LFL+L      L L   L  + L    F  LF      I  
Sbjct: 271  VVKGVYLSFYQFETLTYPGLFLVLGLIGPVLFLLGLLGFIALWTGRFYSLFDYAKIDIPT 330

Query: 1161 LFLLLF---LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL-LLFL 1216
            + L+       L  L   L   +  F L L     L   L +F  +  +    FL ++  
Sbjct: 331  IILISEWQPTGLYALLAGLRFLIFTFPLGLIFCGLLLEDLAVFSFIYSVSQLRFLGVMVF 390

Query: 1217 LLLFLILPLFLLL 1229
             ++  + P+  L+
Sbjct: 391  PIMLTLAPVIALI 403

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 49.0 bits (118), Expect = 1e-05
 Identities = 70/207 (33%), Positives = 90/207 (43%), Gaps = 22/207 (10%)

Query: 951  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1010
            L FLF+LLFL+ L  +   + L+   L   FLL FLF+LLF L  +     F  +  F  
Sbjct: 2    LKFLFMLLFLIPLCFLKNSWWLVQSLL---FLLSFLFMLLFSLSFY-----FSNISYFFG 53

Query: 1011 LLFLLLFLFLLLFLLLLFLILPLF-LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1069
            L  L   L LL F + + +IL    +        LFL L LFLL+FLLL F  + L L  
Sbjct: 54   LDLLSFGLILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFY 113

Query: 1070 FLFLLLLFLLLFLFLL-------------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1116
              F   L   LFL L              L    LF  LPL + +F        L F  L
Sbjct: 114  IFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLL 173

Query: 1117 LLFLLLLFLILPLFLLLFLFLLLLFLL 1143
              F  L FL     +L FL  + +F +
Sbjct: 174  NFFGSLNFLWYLSMILAFLVKMPMFFV 200

Length = 445

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 49.0 bits (118), Expect = 1e-05
 Identities = 70/207 (33%), Positives = 90/207 (43%), Gaps = 22/207 (10%)

Query: 1111 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1170
            L FLF+LLFL+ L  +   + L+   L   FLL FLF+LLF L  +     F  +  F  
Sbjct: 2    LKFLFMLLFLIPLCFLKNSWWLVQSLL---FLLSFLFMLLFSLSFY-----FSNISYFFG 53

Query: 1171 LLFLLLFLFLLLFLLLLFLILPLF-LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1229
            L  L   L LL F + + +IL    +        LFL L LFLL+FLLL F  + L L  
Sbjct: 54   LDLLSFGLILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFY 113

Query: 1230 FLFLLLLFLLLFLFLL-------------LFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1276
              F   L   LFL L              L    LF  LPL + +F        L F  L
Sbjct: 114  IFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLL 173

Query: 1277 LLFLLLLFLILPLFLLLFLFLLLLFLL 1303
              F  L FL     +L FL  + +F +
Sbjct: 174  NFFGSLNFLWYLSMILAFLVKMPMFFV 200

Length = 445

>gnl|CDD|222703 pfam14351, DUF4401, Domain of unknown function (DUF4401)

 Score = 48.8 bits (117), Expect = 1e-05
 Identities = 105/310 (33%), Positives = 130/310 (41%), Gaps = 8/310 (2%)

Query: 1010 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1069
            L L   L L   L       ++   +L+ + + LL  L  LFL    L L L   L L  
Sbjct: 17   LFLLGFLALAFNLVFDEGGALVVGLILIAIAVALLRKLPSLFLRQLALALSLAGQLLLAF 76

Query: 1070 FLFLLLL--FLLLFLFLLLFLLLLFLILPLFLLLFLFL-LLLFLLLFLFLLLFLLLLFLI 1126
             LF LL    L   L L L L LL+ ++P  LL FL     +  LL L   L L  L  +
Sbjct: 77   GLFDLLDESVLAALLLLALILALLYFLMPDRLLRFLSAAAGVLALLGLLAELLLSGLAYL 136

Query: 1127 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1186
            L     L L  L +FLLL L L        L+ PL   L L LL L L+L    L+    
Sbjct: 137  LLPLAPLLLVALFVFLLLNLILGRLRRRHALLEPLAYGLLLSLLALLLVLSGNSLILGAP 196

Query: 1187 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1246
             FL   L  LL L LL+   LL     L  +L     PL   L   +LL  LLL L  L 
Sbjct: 197  FFLASWLKALLLLLLLVGLALL-----LISILWRRRQPLTSKLQAVVLLALLLLALLSLP 251

Query: 1247 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1306
               L   +L L L  +    +L  L  L LLL+L   +  L + LL    LL    +L L
Sbjct: 252  APGLGAALLLLLLGFYRGSRVLLGLGLLALLLYLSWYYYSLGITLLAKSLLLAGSGILLL 311

Query: 1307 FLLLFLLLLF 1316
               L LL LF
Sbjct: 312  GARLLLLRLF 321

This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important. Length = 321

>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]

 Score = 48.3 bits (115), Expect = 2e-05
 Identities = 122/387 (31%), Positives = 163/387 (42%), Gaps = 14/387 (3%)

Query: 762  ISVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 821
            IS+   A +  +  I   LL   LLLL L L +   L L LL L+L L LLL L L LLF
Sbjct: 30   ISLAFLAGLGSTILILAALLLALLLLLLLFLPVAFKLLLSLLNLLLFLRLLLLLLLWLLF 89

Query: 822  LLLF--LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 879
              L     +LL   +L L+L   LLLF+ L  L L   + LL+ L  + L L L L L  
Sbjct: 90   SSLSAGAPILLLATILLLLLTARLLLFISLFALLLNGRILLLVLLGSVLLGLLLALGLAG 149

Query: 880  FLLLLFLLLFLFLLLFLLLLFLILPLFL-LLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 938
                   L  L+ +L +          +    LF  LL  +L  +LL  LL    +L   
Sbjct: 150  AGAEELALANLWRVLGVYAFKNYAGSLMAAALLFPALLLWILGSWLLGTLLAALALLIAL 209

Query: 939  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 998
            LL     L   L L L L LFL+LL L   L L L   LL L L+  + + LF  L  L+
Sbjct: 210  LLTGSRSLAALLALILLLALFLVLLLLRRVLLLGLLAALLALILIALVGIELFEPLELLL 269

Query: 999  --------LPLFLLLFLFLLLLFL---LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1047
                    L   L ++   L       +       F   L L+     + + + L    L
Sbjct: 270  ARLGTDSSLTGRLDIWEAALEAIKERPIFGYGYGAFWRSLELLNSRLWIYYEWALRANFL 329

Query: 1048 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1107
                L L +LL   IL L LLL L L++L L L       L  L  +L L ++LF+ L  
Sbjct: 330  HAHNLYLEILLETGILGLLLLLALLLVILLLFLKRTRKNALAALLGLLFLGIILFVGLFS 389

Query: 1108 LFLLLFLFLLLFLLLLFLILPLFLLLF 1134
                LF  +     +LF+   L L  F
Sbjct: 390  EVESLFFAITSSFWVLFVAGLLGLAAF 416

Length = 424

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 48.6 bits (117), Expect = 2e-05
 Identities = 58/184 (31%), Positives = 78/184 (42%), Gaps = 13/184 (7%)

Query: 1183 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1242
             L  LF++L L  L FL      +   LFLL FL +L   L  +     +   L LL F 
Sbjct: 1    MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFG 60

Query: 1243 FLLLFLLLLFLILPLF--LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1300
             +LL   +  L++     +        LFL L LFLL+FLLL F  + L L    F   L
Sbjct: 61   LILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSL 120

Query: 1301 FLLLFLFLL-----------LFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSSSS 1349
               LFL L            ++LL   L   L LL+ +F L      L  FLL+ F S +
Sbjct: 121  IPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLN 180

Query: 1350 SSSF 1353
               +
Sbjct: 181  FLWY 184

Length = 445

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 48.2 bits (116), Expect = 2e-05
 Identities = 63/204 (30%), Positives = 89/204 (43%), Gaps = 14/204 (6%)

Query: 777 SFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 836
            FL + LFL+ L  L   + L+  LL  L      +L   L   F  +  F  L LL   
Sbjct: 3   KFLFMLLFLIPLCFLKNSWWLVQSLLFLLS--FLFMLLFSLSFYFSNISYFFGLDLLSFG 60

Query: 837 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 896
           LIL   L  ++ +L++     ++       LFL L LFLL+FL L    + L LF + F 
Sbjct: 61  LIL---LSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFE 117

Query: 897 LLLFLILPLFLL-------LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 949
             L   L L L        L   + LLF  LF   L  L+ +F +      L  FLL  F
Sbjct: 118 SSLIPTLFLILGWGYQPERLQAGIYLLFYTLF-ASLPLLVGIFYLYNNSGSLSFFLLNFF 176

Query: 950 LLLFLFLLLFLLLLFLI-LPLFLL 972
             L     L ++L FL+ +P+F +
Sbjct: 177 GSLNFLWYLSMILAFLVKMPMFFV 200

Length = 445

>gnl|CDD|222703 pfam14351, DUF4401, Domain of unknown function (DUF4401)

 Score = 47.6 bits (114), Expect = 2e-05
 Identities = 109/316 (34%), Positives = 138/316 (43%), Gaps = 9/316 (2%)

Query: 775  AISFLLLFLFLLLLFLLLFLFLLLFLLLL---FLILPLFLLLFLFLLLLFLLLFLFLLLF 831
             I  LL F   L    LL    L F L+      ++   +L+ + + LL  L  LFL   
Sbjct: 3    YIRLLLGFGGWLAALFLLGFLALAFNLVFDEGGALVVGLILIAIAVALLRKLPSLFLRQL 62

Query: 832  LLLLFLILPLFLLLFLFLLLL--FLLLFLFLLLFLLLLFLILPLFLLLFLFL-LLLFLLL 888
             L L L   L L   LF LL    L   L L L L LL+ ++P  LL FL     +  LL
Sbjct: 63   ALALSLAGQLLLAFGLFDLLDESVLAALLLLALILALLYFLMPDRLLRFLSAAAGVLALL 122

Query: 889  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 948
             L   L L  L  +L     L L  L +FLLL L L        L+ PL   L L LL L
Sbjct: 123  GLLAELLLSGLAYLLLPLAPLLLVALFVFLLLNLILGRLRRRHALLEPLAYGLLLSLLAL 182

Query: 949  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1008
             L+L    L+     FL   L  LL L LLL+ L L L  +L+     L   L  ++ L 
Sbjct: 183  LLVLSGNSLILGAPFFLASWLKALL-LLLLLVGLALLLISILWRRRQPLTSKLQAVVLLA 241

Query: 1009 LLLLFLLLFLFLLLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1066
            LLLL LL      L   LL L+L  +    + L L LL LLL+L    + L + L+    
Sbjct: 242  LLLLALLSLPAPGLGAALLLLLLGFYRGSRVLLGLGLLALLLYLSWYYYSLGITLLAKSL 301

Query: 1067 LLLFLFLLLLFLLLFL 1082
            LL    +LLL   L L
Sbjct: 302  LLAGSGILLLGARLLL 317

This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important. Length = 321

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 48.9 bits (117), Expect = 2e-05
 Identities = 77/300 (25%), Positives = 110/300 (36%), Gaps = 18/300 (6%)

Query: 773  SDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 832
            S     L    FL  L +LL +   L L L +L L LFLLL  F +   L   L      
Sbjct: 279  STVGPLLADSQFLTPLAILLSILNALPLDLAWLALGLFLLLAFFFIARLLGAALTPTAPS 338

Query: 833  LLLFLI--------LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL-LFLFLLL 883
              LF++        +P    + L   L+  L  +  LL   L+  +    L    +  L 
Sbjct: 339  WRLFMVCDRFAHFLMPREQAMALRRGLVRSLGAINPLLGAPLVLTVADDGLASDVIGQLG 398

Query: 884  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 943
            +   L    LL   L       +  L L  +L    L L +      L+        LFL
Sbjct: 399  IIAALLAPALLVARLKDAAWRAYPRLLLITVLSAAPLALIVAALTGYLYTA------LFL 452

Query: 944  FLLLLFLLLFLFLLLFLLLLFLILPL-FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1002
             L L+  +  LF    L +L  +      L F   L    L     L+ + L  + L L 
Sbjct: 453  ALRLVVTVAILFTWYVLYILRGLSVSARRLAFARALAGRALAEEAELVEVALDQIGLQLL 512

Query: 1003 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1062
             L+ L LLL+ + L L++    L    I     L     +L    + L  LL  +LLFLI
Sbjct: 513  RLIRLLLLLIAIPLVLYVWGSYLE--DITLWAYLGTTGGVLGVESITLGALLQAVLLFLI 570

Length = 835

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 48.5 bits (116), Expect = 2e-05
 Identities = 100/352 (28%), Positives = 117/352 (33%)

Query: 989  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1048
            LL L L F +  L   L    L L             L+     L   L   L       
Sbjct: 1    LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 1049 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1108
            F    + LL L L     LLL     L  LL+  FLL             L+   F    
Sbjct: 61   FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120

Query: 1109 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1168
                         L  L+ PL   L    L    L  +  +L LLL  L+L L  LL L 
Sbjct: 121  RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLL 180

Query: 1169 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1228
             L  FLL F +  L   L   +  +  L      LL  L  L  +L  LL  L+      
Sbjct: 181  ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR 240

Query: 1229 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1288
              L LL+  LL  L LLL  L   L L L  LL L   L F    L  L   L       
Sbjct: 241  RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARG 300

Query: 1289 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLF 1340
                LF     L   L   L   LL       +FL+L    LL  L LLLL 
Sbjct: 301  TASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown]

 Score = 48.6 bits (116), Expect = 2e-05
 Identities = 47/190 (24%), Positives = 74/190 (38%), Gaps = 15/190 (7%)

Query: 1122 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1181
              F  LP  +    F          FL     LL  IL   L   L L   +L   L  L
Sbjct: 12   KYFKTLPKSVASIYF--------IAFLFGVAALLHYILGGILPAVLLLGFTYLFAILLDL 63

Query: 1182 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1241
            + + +L +   L    FL  + L +     +LL +LL    + + L+L + L+L F  L 
Sbjct: 64   ILVKILGINFKLKRSSFLAFVSLVIWSTFLVLLLVLLAIRPVDVSLILAVALVLSFRFLI 123

Query: 1242 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1301
            + +     +   +LP        +  ++  L ++L  F+    LI+P  +   L LLL  
Sbjct: 124  VLVSYKNSVPSSVLPS-------MNYVYSPLIVYLKGFVAQYSLIVPFIISSLLILLLAS 176

Query: 1302 LLLFLFLLLF 1311
            LL    L  F
Sbjct: 177  LLYGRVLYSF 186

Length = 578

>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]

 Score = 47.9 bits (114), Expect = 3e-05
 Identities = 125/400 (31%), Positives = 163/400 (40%), Gaps = 14/400 (3%)

Query: 988  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1047
             + FL+L    L   L       L+FL + L  L  L    LIL   LL  L LLLLFL 
Sbjct: 2    SVPFLILALSFLIPKLGALWIAALVFLFISLAFLAGLGSTILILAALLLALLLLLLLFLP 61

Query: 1048 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1107
            +   LLL LL L L L L LLL L+LL   L     +LL   +L L+L   LLLF+ L  
Sbjct: 62   VAFKLLLSLLNLLLFLRLLLLLLLWLLFSSLSAGAPILLLATILLLLLTARLLLFISLFA 121

Query: 1108 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL-LLF 1166
            L L   + LL+ L  + L L L L L         L  L+ +L +          +    
Sbjct: 122  LLLNGRILLLVLLGSVLLGLLLALGLAGAGAEELALANLWRVLGVYAFKNYAGSLMAAAL 181

Query: 1167 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1226
            LF  LL  +L  +LL  LL    +L   LL     L   L L L L LFL+LL L   L 
Sbjct: 182  LFPALLLWILGSWLLGTLLAALALLIALLLTGSRSLAALLALILLLALFLVLLLLRRVLL 241

Query: 1227 LLLFLFLLLLFLLLFLFLLLFLLLLFLI--------LPLFLLLFLFLLLLFL---LLFLF 1275
            L L   LL L L+  + + LF  L  L+        L   L ++   L       +    
Sbjct: 242  LGLLAALLALILIALVGIELFEPLELLLARLGTDSSLTGRLDIWEAALEAIKERPIFGYG 301

Query: 1276 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLF 1335
               F   L L+     + + + L    L    L L +LL   IL L  LL L LLL+ L 
Sbjct: 302  YGAFWRSLELLNSRLWIYYEWALRANFLHAHNLYLEILLETGILGL--LLLLALLLVILL 359

Query: 1336 LLLLFLLSSFSSSSSSSFSYSSSSSSSSFSPLSPLFDFRT 1375
            L L     +  ++               FS +  LF   T
Sbjct: 360  LFLKRTRKNALAALLGLLFLGIILFVGLFSEVESLFFAIT 399

Length = 424

>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 48.2 bits (115), Expect = 3e-05
 Identities = 53/217 (24%), Positives = 75/217 (34%), Gaps = 8/217 (3%)

Query: 805  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 864
                L     L      LLL L       L F     + L +  L  L  L+      + 
Sbjct: 1    ARAGLARQWVLGRPARRLLLALVFGALFALAFPPPDWWWLAWFSLAPLLWLVRGAPTSWE 60

Query: 865  LLLFLILPLFLLLFLFL---LLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLL 920
             L           FL     L   L + L LL   L LL L+L  +L LFL L+ +    
Sbjct: 61   GLAKSGFLFGFGFFLAGFYWLGTSLGVGLGLLAVALPLLVLLLAAWLALFLLLVAVLTCR 120

Query: 921  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 980
              F LL +   ++    +L  +      +LLL         LL  +  L  +  L  L++
Sbjct: 121  LWFALLVVPSAWVAAE-WLRGWSLTGFPWLLLGYSQWSPSPLLQ-LASLGGVWLLSFLVV 178

Query: 981  FL--LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1015
             +  LL   LL       L+L   LL+ L      LL
Sbjct: 179  AVNALLASVLLKRATGGRLLLLGLLLVVLLAYGCALL 215

Length = 518

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 48.1 bits (115), Expect = 3e-05
 Identities = 76/326 (23%), Positives = 118/326 (36%), Gaps = 13/326 (3%)

Query: 1039 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1098
            LF  + F LL L   + L    L+    +L   +L  L + L   +   L     + PL 
Sbjct: 236  LFSSITFALLLLVGGMRLFSARLLRGPSVLSPSYLKRLLVALASTVGPLLADSQFLTPLA 295

Query: 1099 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1158
            +LL +   L   L +L L LFLLL F  +   L   L        LF+    F   L   
Sbjct: 296  ILLSILNALPLDLAWLALGLFLLLAFFFIARLLGAALTPTAPSWRLFMVCDRFAHFL--- 352

Query: 1159 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL-LFLFLLLLFLLLFLFLLLFLL 1217
            +P    + L   L+  L  +  LL   L+  +    L    +  L +   L    LL   
Sbjct: 353  MPREQAMALRRGLVRSLGAINPLLGAPLVLTVADDGLASDVIGQLGIIAALLAPALLVAR 412

Query: 1218 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1277
            L       +  L L  +L    L L +      L+  L      FL L L+  +  LF  
Sbjct: 413  LKDAAWRAYPRLLLITVLSAAPLALIVAALTGYLYTAL------FLALRLVVTVAILFTW 466

Query: 1278 LFLLLLFLILPL-FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFL 1336
              L +L  +      L F   L    L     L+ + L  + L L  L  + LLLL + +
Sbjct: 467  YVLYILRGLSVSARRLAFARALAGRALAEEAELVEVALDQIGLQL--LRLIRLLLLLIAI 524

Query: 1337 LLLFLLSSFSSSSSSSFSYSSSSSSS 1362
             L+  +        + ++Y  ++   
Sbjct: 525  PLVLYVWGSYLEDITLWAYLGTTGGV 550

Length = 835

>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional

 Score = 47.2 bits (113), Expect = 3e-05
 Identities = 75/273 (27%), Positives = 111/273 (40%), Gaps = 3/273 (1%)

Query: 1059 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1118
            LFL L  F+ L +F+     LL   L +FL             F+    L LL  LF   
Sbjct: 1    LFLSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNYFVLQESLGLLFLLFSFG 60

Query: 1119 FLLLLFLILPLFLLLFLFLLLLFLL-LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1177
            +   L L++ + +  F F +      LF + L++ L    +  L +LL  F    F LL 
Sbjct: 61   YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLL 120

Query: 1178 LFLLLFLLLLFLILPLFLLLFLFLLLLF--LLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1235
              LL+    +FL+     LL L     F  L+L  F   F +         L+LFL    
Sbjct: 121  FGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKF 180

Query: 1236 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1295
              +    F+    LL+F+ LP  +  F+ +  L  +L +     L LLFL+    L L  
Sbjct: 181  NNVNKLNFVSWETLLVFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSF 240

Query: 1296 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1328
            +L+ L   LFL L  +    F      +LL L 
Sbjct: 241  WLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273

Length = 273

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 787 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 846
           LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4   LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 847 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 901
             LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64  RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 819 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 878
           LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4   LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 879 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 933
             LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64  RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 851 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 910
           LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4   LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 911 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 965
             LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64  RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 883 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 942
           LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4   LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 943 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 997
             LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64  RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 915  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 974
            LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 975  LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1029
              LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 947  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1006
            LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1007 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1061
              LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 979  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1038
            LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1039 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1093
              LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 1011 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1070
            LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1071 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1125
              LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 1043 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1102
            LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1103 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1157
              LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 1075 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1134
            LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1135 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1189
              LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 1107 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1166
            LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1167 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1221
              LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 1139 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1198
            LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1199 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1253
              LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 1171 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1230
            LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1231 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1285
              LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 42/115 (36%), Positives = 48/115 (41%)

Query: 1203 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1262
            LL L L L L   L    L+ P      L LL+L L L LF    L   +    L   L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1263 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1317
              LL   L+  L L L  LL        +LL  F+L L LLL   LLL  LL  L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRL 118

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO

 Score = 48.0 bits (115), Expect = 4e-05
 Identities = 62/186 (33%), Positives = 82/186 (44%), Gaps = 19/186 (10%)

Query: 764 VLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLL-------LLFLILPLFLLLFLF 816
           +L   +I   +      L    + L  LL L L  F         LLF +L LFL+L  +
Sbjct: 261 LLAKLLIGSFNFTQMGGLPNIYVGLLPLLLLILYFFNKLIKLKEKLLFALLLLFLILSFY 320

Query: 817 LLLLFLLL------------FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 864
           L  L L+             F FL  FL+LL     L  L  L  L + + + L +LLF+
Sbjct: 321 LPPLDLVWHGFQAPVWFPYRFSFLFSFLILLLAAEALLHLKQLKKLKILISILLLVLLFI 380

Query: 865 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 924
           L+  L L           LL  LLFL L L LLLLFL   +   L + LLLL ++L L L
Sbjct: 381 LVFLLNLSKHYSFLTQTNLLLTLLFLLLYLLLLLLFLKKQIRKKLVIILLLLVVVLELGL 440

Query: 925 LLFLLL 930
             +L L
Sbjct: 441 NAYLSL 446

This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family. Length = 835

>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]

 Score = 47.5 bits (113), Expect = 4e-05
 Identities = 110/367 (29%), Positives = 153/367 (41%), Gaps = 3/367 (0%)

Query: 754  IKGLRVADISVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 813
            +  L +  + V    +++  + + FL L L LLL  L   L     +LLL  IL L L  
Sbjct: 52   LLLLLLLFLPVAFKLLLSLLNLLLFLRLLLLLLLWLLFSSLSAGAPILLLATILLLLLTA 111

Query: 814  FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 873
             L L +    L L   + LL+L   + L LLL L L            L+ +L       
Sbjct: 112  RLLLFISLFALLLNGRILLLVLLGSVLLGLLLALGLAGAGAEELALANLWRVLGVYAFKN 171

Query: 874  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 933
            +    +   LLF  L L++L   LL  L+    L L + LLL        LL  +LLL L
Sbjct: 172  YAGSLMAAALLFPALLLWILGSWLLGTLL--AALALLIALLLTGSRSLAALLALILLLAL 229

Query: 934  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 993
             L L LL  + LL L   L   +L+ L+ + L  PL LLL        L   L +    L
Sbjct: 230  FLVLLLLRRVLLLGLLAALLALILIALVGIELFEPLELLLARLGTDSSLTGRLDIWEAAL 289

Query: 994  LLFLILPLF-LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1052
                  P+F      F   L LL     + +   L         L+L +LL   +L L L
Sbjct: 290  EAIKERPIFGYGYGAFWRSLELLNSRLWIYYEWALRANFLHAHNLYLEILLETGILGLLL 349

Query: 1053 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1112
            LL LLL+ L+L L       L  L  LLFL ++LF+ L   +  LF  +     +LF+  
Sbjct: 350  LLALLLVILLLFLKRTRKNALAALLGLLFLGIILFVGLFSEVESLFFAITSSFWVLFVAG 409

Query: 1113 FLFLLLF 1119
             L L  F
Sbjct: 410  LLGLAAF 416

Length = 424

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 48.1 bits (115), Expect = 4e-05
 Identities = 57/209 (27%), Positives = 83/209 (39%), Gaps = 4/209 (1%)

Query: 949  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL-ILPLFLLLFL 1007
            F+L  L   +  +L  LI  LF L FL L  L LL    L   L  L L +      +  
Sbjct: 704  FILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMK 763

Query: 1008 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILP 1064
                          +F   + +I  L  +LF+   LL+LL F+   L L L   L     
Sbjct: 764  RPPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTA 823

Query: 1065 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1124
              +L+ + LLL   +          LLF    L+L L + ++L  L++FL  L   +   
Sbjct: 824  FTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQP 883

Query: 1125 LILPLFLLLFLFLLLLFLLLFLFLLLFLL 1153
              L LF  L    + L LL  +   L+ L
Sbjct: 884  TPLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 48.1 bits (115), Expect = 4e-05
 Identities = 57/209 (27%), Positives = 83/209 (39%), Gaps = 4/209 (1%)

Query: 1077 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL-ILPLFLLLFL 1135
            F+L  L   +  +L  LI  LF L FL L  L LL    L   L  L L +      +  
Sbjct: 704  FILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMK 763

Query: 1136 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILP 1192
                          +F   + +I  L  +LF+   LL+LL F+   L L L   L     
Sbjct: 764  RPPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTA 823

Query: 1193 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1252
              +L+ + LLL   +          LLF    L+L L + ++L  L++FL  L   +   
Sbjct: 824  FTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQP 883

Query: 1253 LILPLFLLLFLFLLLLFLLLFLFLLLFLL 1281
              L LF  L    + L LL  +   L+ L
Sbjct: 884  TPLSLFEWLIAIAVALLLLYIVVSELYKL 912

Length = 917

>gnl|CDD|222703 pfam14351, DUF4401, Domain of unknown function (DUF4401)

 Score = 46.9 bits (112), Expect = 4e-05
 Identities = 106/317 (33%), Positives = 135/317 (42%), Gaps = 10/317 (3%)

Query: 803  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 862
            L L    +L     L  L L   L           ++   +L+ + + LL  L  LFL  
Sbjct: 6    LLLGFGGWLAALFLLGFLALAFNLVFDEG----GALVVGLILIAIAVALLRKLPSLFLRQ 61

Query: 863  FLLLLFLILPLFLLLFLFLLLL--FLLLFLFLLLFLLLLFLILPLFLLLFLFL-LLLFLL 919
              L L L   L L   LF LL    L   L L L L LL+ ++P  LL FL     +  L
Sbjct: 62   LALALSLAGQLLLAFGLFDLLDESVLAALLLLALILALLYFLMPDRLLRFLSAAAGVLAL 121

Query: 920  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 979
            L L   L L  L  +L     L L  L +FLLL L L        L+ PL   L L LL 
Sbjct: 122  LGLLAELLLSGLAYLLLPLAPLLLVALFVFLLLNLILGRLRRRHALLEPLAYGLLLSLLA 181

Query: 980  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1039
            L L+L    L+     FL   L  LL L LLL+ L L L  +L+     L   L  ++ L
Sbjct: 182  LLLVLSGNSLILGAPFFLASWLKALL-LLLLLVGLALLLISILWRRRQPLTSKLQAVVLL 240

Query: 1040 FLLLLFLLLFLFLLLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1097
             LLLL LL      L   LL L+L  +    + L L LL LLL+L    + L + L+   
Sbjct: 241  ALLLLALLSLPAPGLGAALLLLLLGFYRGSRVLLGLGLLALLLYLSWYYYSLGITLLAKS 300

Query: 1098 FLLLFLFLLLLFLLLFL 1114
             LL    +LLL   L L
Sbjct: 301  LLLAGSGILLLGARLLL 317

This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important. Length = 321

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 47.3 bits (113), Expect = 4e-05
 Identities = 89/319 (27%), Positives = 108/319 (33%)

Query: 1049 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1108
             L L L   L  L   L       L     L      L +    L   L  LL  +L   
Sbjct: 1    LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 1109 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1168
            F    + LL  LL     L L     L+LLL+   L       L      L         
Sbjct: 61   FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120

Query: 1169 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1228
                  L      L  LL  L+  L      +  L  +L  L LLL LLLLFL+  L LL
Sbjct: 121  RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLL 180

Query: 1229 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1288
               F LL F    L   L L L  ++        L L L  L   L  LL  LL   +  
Sbjct: 181  ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR 240

Query: 1289 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSSS 1348
              LLL + LLL  L L L  L   L L L+  L L   L      L  L   L    +  
Sbjct: 241  RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARG 300

Query: 1349 SSSSFSYSSSSSSSSFSPL 1367
            ++S    +  S   +  PL
Sbjct: 301  TASGLFNTFGSLGGALGPL 319

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown]

 Score = 47.8 bits (114), Expect = 4e-05
 Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 11/214 (5%)

Query: 834  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 893
              F  LP  +    F          FL     LL  IL   L   L L   +L   L  L
Sbjct: 12   KYFKTLPKSVASIYF--------IAFLFGVAALLHYILGGILPAVLLLGFTYLFAILLDL 63

Query: 894  LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 953
            + + +L +   L    FL  + L +     +LL +LL   I P+ + L L + L+    F
Sbjct: 64   ILVKILGINFKLKRSSFLAFVSLVIWSTFLVLLLVLLA--IRPVDVSLILAVALVLSFRF 121

Query: 954  LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1013
            L +L+          L  + +++  L+  L        L++ F+I  L +LL   LL   
Sbjct: 122  LIVLVSYKNSVPSSVLPSMNYVYSPLIVYLKGFVAQYSLIVPFIISSLLILLLASLLYG- 180

Query: 1014 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1047
             +L+ F+ +        L L +L F    L  +L
Sbjct: 181  RVLYSFVKVVNRPGVRSLGLKILEFFSNFLGAIL 214

Length = 578

>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown]

 Score = 47.8 bits (114), Expect = 4e-05
 Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 11/214 (5%)

Query: 898  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 957
              F  LP  +    F          FL     LL  IL   L   L L   +L   L  L
Sbjct: 12   KYFKTLPKSVASIYF--------IAFLFGVAALLHYILGGILPAVLLLGFTYLFAILLDL 63

Query: 958  LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1017
            + + +L +   L    FL  + L +     +LL +LL   I P+ + L L + L+    F
Sbjct: 64   ILVKILGINFKLKRSSFLAFVSLVIWSTFLVLLLVLLA--IRPVDVSLILAVALVLSFRF 121

Query: 1018 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1077
            L +L+          L  + +++  L+  L        L++ F+I  L +LL   LL   
Sbjct: 122  LIVLVSYKNSVPSSVLPSMNYVYSPLIVYLKGFVAQYSLIVPFIISSLLILLLASLLYG- 180

Query: 1078 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1111
             +L+ F+ +        L L +L F    L  +L
Sbjct: 181  RVLYSFVKVVNRPGVRSLGLKILEFFSNFLGAIL 214

Length = 578

>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown]

 Score = 47.8 bits (114), Expect = 4e-05
 Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 11/214 (5%)

Query: 962  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1021
              F  LP  +    F          FL     LL  IL   L   L L   +L   L  L
Sbjct: 12   KYFKTLPKSVASIYF--------IAFLFGVAALLHYILGGILPAVLLLGFTYLFAILLDL 63

Query: 1022 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1081
            + + +L +   L    FL  + L +     +LL +LL   I P+ + L L + L+    F
Sbjct: 64   ILVKILGINFKLKRSSFLAFVSLVIWSTFLVLLLVLLA--IRPVDVSLILAVALVLSFRF 121

Query: 1082 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1141
            L +L+          L  + +++  L+  L        L++ F+I  L +LL   LL   
Sbjct: 122  LIVLVSYKNSVPSSVLPSMNYVYSPLIVYLKGFVAQYSLIVPFIISSLLILLLASLLYG- 180

Query: 1142 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1175
             +L+ F+ +        L L +L F    L  +L
Sbjct: 181  RVLYSFVKVVNRPGVRSLGLKILEFFSNFLGAIL 214

Length = 578

>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown]

 Score = 47.8 bits (114), Expect = 4e-05
 Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 11/214 (5%)

Query: 1026 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1085
              F  LP  +    F          FL     LL  IL   L   L L   +L   L  L
Sbjct: 12   KYFKTLPKSVASIYF--------IAFLFGVAALLHYILGGILPAVLLLGFTYLFAILLDL 63

Query: 1086 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1145
            + + +L +   L    FL  + L +     +LL +LL   I P+ + L L + L+    F
Sbjct: 64   ILVKILGINFKLKRSSFLAFVSLVIWSTFLVLLLVLLA--IRPVDVSLILAVALVLSFRF 121

Query: 1146 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1205
            L +L+          L  + +++  L+  L        L++ F+I  L +LL   LL   
Sbjct: 122  LIVLVSYKNSVPSSVLPSMNYVYSPLIVYLKGFVAQYSLIVPFIISSLLILLLASLLYG- 180

Query: 1206 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1239
             +L+ F+ +        L L +L F    L  +L
Sbjct: 181  RVLYSFVKVVNRPGVRSLGLKILEFFSNFLGAIL 214

Length = 578

>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown]

 Score = 47.8 bits (114), Expect = 4e-05
 Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 11/214 (5%)

Query: 1090 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1149
              F  LP  +    F          FL     LL  IL   L   L L   +L   L  L
Sbjct: 12   KYFKTLPKSVASIYF--------IAFLFGVAALLHYILGGILPAVLLLGFTYLFAILLDL 63

Query: 1150 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1209
            + + +L +   L    FL  + L +     +LL +LL   I P+ + L L + L+    F
Sbjct: 64   ILVKILGINFKLKRSSFLAFVSLVIWSTFLVLLLVLLA--IRPVDVSLILAVALVLSFRF 121

Query: 1210 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1269
            L +L+          L  + +++  L+  L        L++ F+I  L +LL   LL   
Sbjct: 122  LIVLVSYKNSVPSSVLPSMNYVYSPLIVYLKGFVAQYSLIVPFIISSLLILLLASLLYG- 180

Query: 1270 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1303
             +L+ F+ +        L L +L F    L  +L
Sbjct: 181  RVLYSFVKVVNRPGVRSLGLKILEFFSNFLGAIL 214

Length = 578

>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown]

 Score = 47.8 bits (114), Expect = 4e-05
 Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 3/208 (1%)

Query: 776 ISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 835
            S     L   +  +    FL     LL  IL   L   L L   +L   L  L+ + +L
Sbjct: 10  YSKYFKTLPKSVASIYFIAFLFGVAALLHYILGGILPAVLLLGFTYLFAILLDLILVKIL 69

Query: 836 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 895
            +   L    FL  + L +     +LL +LL   I P+ + L L + L+    FL +L+ 
Sbjct: 70  GINFKLKRSSFLAFVSLVIWSTFLVLLLVLLA--IRPVDVSLILAVALVLSFRFLIVLVS 127

Query: 896 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 955
                    L  + +++  L+  L        L++ F+I  L +LL   LL    +L+ F
Sbjct: 128 YKNSVPSSVLPSMNYVYSPLIVYLKGFVAQYSLIVPFIISSLLILLLASLLYG-RVLYSF 186

Query: 956 LLLFLLLLFLILPLFLLLFLFLLLLFLL 983
           + +        L L +L F    L  +L
Sbjct: 187 VKVVNRPGVRSLGLKILEFFSNFLGAIL 214

Length = 578

>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General function prediction only]

 Score = 47.1 bits (112), Expect = 5e-05
 Identities = 111/444 (25%), Positives = 150/444 (33%), Gaps = 4/444 (0%)

Query: 757  LRVADISVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 816
             R+    V    ++    A+    L L L  L LLL L L   L L  L+L L L  FL 
Sbjct: 7    SRLLLRFVAALLLLGILLALLLSWLPLLLAALLLLLALLLARALPLSKLLLVLLLAFFLL 66

Query: 817  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 876
             +   L L L  L   +    I   F+++ L                     L L L L 
Sbjct: 67   GIFAALFLLLLSLALYISGGTIALNFVIIDLISGDTDRYRLSLGRGQGRNDQLKLRLSLE 126

Query: 877  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 936
                 +              L L           L   L    +     +F   +     
Sbjct: 127  REKEAVGALGGALWINETLKLELPQGALNLGGFDLEAYLGAQGIGALGTVFQAAIISRSL 186

Query: 937  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL---- 992
               L      L+  LL+L LL  L  L L L L  L  LF  L      L L   L    
Sbjct: 187  PRFLRSRIRRLVAQLLYLLLLGPLGGLLLALLLGELSGLFKELWEAFRALGLAHLLAISG 246

Query: 993  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1052
            L + L+   FL L   L          LL  L L + IL  F    L  L++  L  L  
Sbjct: 247  LHVALLAGTFLFLLRRLGRWIGPALPLLLGLLALFYAILTGFSPSVLRALVMLALALLAS 306

Query: 1053 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1112
            L    L  + + L   + + LL    +L L   L  L +  ++    L  L  L   L +
Sbjct: 307  LSLRNLSSIFILLLSAIAILLLAPLAILSLGFWLSFLAVAALILWSQLFRLLGLSWPLPI 366

Query: 1113 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1172
             L LL  L LL L      LL L L L+   L   + L  LL   +L   +   +  L+L
Sbjct: 367  TLALLATLPLLILQFGRLGLLGLLLNLIVSPLISLISLPGLLANFLLSPLVSFLIVPLIL 426

Query: 1173 FLLLFLFLLLFLLLLFLILPLFLL 1196
              LL   LL+   L  +   +F L
Sbjct: 427  LGLLLAPLLIGAALARVRPGVFGL 450

Length = 453

>gnl|CDD|227317 COG4984, COG4984, Predicted membrane protein [Function unknown]

 Score = 47.6 bits (113), Expect = 5e-05
 Identities = 105/480 (21%), Positives = 173/480 (36%), Gaps = 9/480 (1%)

Query: 877  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 936
            + L   LL     + L L + LL      F L    L  +  +     + F L+ +    
Sbjct: 108  ICLIPFLLLFPGNVALALLVTLLVTASVAFSLAISLLGDIVHMTIFLNMGFCLVCYEYFQ 167

Query: 937  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 996
              L   +    +  ++ LF+L+F     LI+      ++ LL       L         F
Sbjct: 168  ERLKDQVNNWFILPMIALFILVFAFGWALIVTYNNSGYVVLLSWLASAGLVYYYKEYRRF 227

Query: 997  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1056
              L L LL F   L++     + L      L  I  + LL FL  +     L +    + 
Sbjct: 228  DFLNLILLFFY--LVVSGCAKILLSSGEDFLSDIFLVTLLAFLGTIGAIAGLLIKWFKWH 285

Query: 1057 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1116
                  +   ++  LF+LL+  L  L L+       L     ++  + L L+  L+  F 
Sbjct: 286  NPTASRVTWLIVPLLFILLIIFLTALLLITLFFSFGLEDGQDIIYPIILFLIIALVMHFN 345

Query: 1117 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL-LFLFLLLLFLL 1175
                   F I  +  +   F+L     LF       L L  IL +F   L       F +
Sbjct: 346  QFEKADWFDIAIVMFIAGGFILYFIFRLFDGENDSYLALMAILSIFDYQLRSSNWFRFPI 405

Query: 1176 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1235
              LF++ FL+ +   L  + L +   L  F L    +   LLL F         +   L+
Sbjct: 406  AALFIIAFLVYIGFFLLRWYLYYEEHLGQFYLQIWIIAGGLLLYFFFSLSLERPYTIKLI 465

Query: 1236 LFLLLFLFLLLFLLLLFLILPLFL------LLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1289
            L       +LL + L       F            L + F ++  +    L   +LI  L
Sbjct: 466  LIAWANELVLLAMNLDIFNRWTFYDTAGQTPEMSDLNIWFHVITGYYFTALTDTWLIKSL 525

Query: 1290 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSSSS 1349
             LL+ +  ++ F+++     L L LL LI    L L L  + +    L+L LL ++ S S
Sbjct: 526  HLLISITFIIFFVIISRRFELTLFLLALIALTLLALCLGFIAVETLALILLLLLAYLSVS 585

Length = 644

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 28/91 (30%), Positives = 39/91 (42%)

Query: 1263 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1322
            + L L    L    L  LL  + +L L    FL + L+  L   F   FLL L     L 
Sbjct: 1    MNLTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLL 60

Query: 1323 LLLFLFLLLLFLFLLLLFLLSSFSSSSSSSF 1353
            LLL  F  LL     +L L+S+ +S  +  +
Sbjct: 61   LLLLSFPRLLKPLAGVLSLVSAAASYFAYFY 91

Length = 555

>gnl|CDD|222703 pfam14351, DUF4401, Domain of unknown function (DUF4401)

 Score = 46.5 bits (111), Expect = 6e-05
 Identities = 107/318 (33%), Positives = 137/318 (43%), Gaps = 12/318 (3%)

Query: 840  PLFLLLFLFLLLLFLLLFLFLLLFLLLL------FLILPLFLLLFLFLLLLFLLLFLFLL 893
            P ++ L L        LFL   L L           ++   +L+ + + LL  L  LFL 
Sbjct: 1    PWYIRLLLGFGGWLAALFLLGFLALAFNLVFDEGGALVVGLILIAIAVALLRKLPSLFLR 60

Query: 894  LFLLLLFLILPLFLLLFLFLLLL--FLLLFLFLLLFLLLLFLILPLFLLLFLFL-LLLFL 950
               L L L   L L   LF LL    L   L L L L LL+ ++P  LL FL     +  
Sbjct: 61   QLALALSLAGQLLLAFGLFDLLDESVLAALLLLALILALLYFLMPDRLLRFLSAAAGVLA 120

Query: 951  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1010
            LL L   L L  L  +L     L L  L +FLLL L L        L+ PL   L L LL
Sbjct: 121  LLGLLAELLLSGLAYLLLPLAPLLLVALFVFLLLNLILGRLRRRHALLEPLAYGLLLSLL 180

Query: 1011 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1070
             L L+L    L+     FL   L  LL L LLL+ L L L  +L+     L   L  ++ 
Sbjct: 181  ALLLVLSGNSLILGAPFFLASWLKALL-LLLLLVGLALLLISILWRRRQPLTSKLQAVVL 239

Query: 1071 LFLLLLFLLLFLFLLLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILP 1128
            L LLLL LL      L   LL L+L  +    + L L LL LLL+L    + L + L+  
Sbjct: 240  LALLLLALLSLPAPGLGAALLLLLLGFYRGSRVLLGLGLLALLLYLSWYYYSLGITLLAK 299

Query: 1129 LFLLLFLFLLLLFLLLFL 1146
              LL    +LLL   L L
Sbjct: 300  SLLLAGSGILLLGARLLL 317

This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important. Length = 321

>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown]

 Score = 47.1 bits (112), Expect = 6e-05
 Identities = 44/178 (24%), Positives = 69/178 (38%), Gaps = 10/178 (5%)

Query: 1154 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1213
              F  LP  +    F          FL     LL  IL   L   L L   +L   L  L
Sbjct: 12   KYFKTLPKSVASIYF--------IAFLFGVAALLHYILGGILPAVLLLGFTYLFAILLDL 63

Query: 1214 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1273
            + + +L +   L    FL  + L +     +LL +LL   I P+ + L L + L+    F
Sbjct: 64   ILVKILGINFKLKRSSFLAFVSLVIWSTFLVLLLVLLA--IRPVDVSLILAVALVLSFRF 121

Query: 1274 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1331
            L +L+          L  + +++  L+  L        L++ F+I  L +LL   LL 
Sbjct: 122  LIVLVSYKNSVPSSVLPSMNYVYSPLIVYLKGFVAQYSLIVPFIISSLLILLLASLLY 179

Length = 578

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 46.9 bits (112), Expect = 6e-05
 Identities = 59/277 (21%), Positives = 104/277 (37%), Gaps = 27/277 (9%)

Query: 782  FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 841
               LL      F    + L L  +   L +LL + ++ L L++  F          ++  
Sbjct: 4    IFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFLMRH 63

Query: 842  FLLLFLFLLLLFLLLFLFLLLFLLLL-----------------------FLILPLFLLLF 878
              +  + + +L L+L L L+  L  L                       F   P  L L 
Sbjct: 64   KGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNLFLL 123

Query: 879  LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 938
            LF+  L+ L      LF  ++ ++L     L L+  +  +       + L L  L+L L 
Sbjct: 124  LFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALS 183

Query: 939  LLLFLFLLLLFLLLFLFLLLFLLLLFL----ILPLFLLLFLFLLLLFLLLFLFLLLFLLL 994
              + +     ++L F+ L LFL  +      +     L  L  +LL +  F+     + +
Sbjct: 184  PYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAIIFV 243

Query: 995  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1031
            + + + LFL L L      +L F  ++L  LL F I 
Sbjct: 244  IAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSFGIT 280

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 46.9 bits (112), Expect = 6e-05
 Identities = 59/277 (21%), Positives = 104/277 (37%), Gaps = 27/277 (9%)

Query: 974  FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1033
               LL      F    + L L  +   L +LL + ++ L L++  F          ++  
Sbjct: 4    IFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFLMRH 63

Query: 1034 FLLLFLFLLLLFLLLFLFLLLFLLLL-----------------------FLILPLFLLLF 1070
              +  + + +L L+L L L+  L  L                       F   P  L L 
Sbjct: 64   KGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNLFLL 123

Query: 1071 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1130
            LF+  L+ L      LF  ++ ++L     L L+  +  +       + L L  L+L L 
Sbjct: 124  LFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALS 183

Query: 1131 LLLFLFLLLLFLLLFLFLLLFLLLLFL----ILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1186
              + +     ++L F+ L LFL  +      +     L  L  +LL +  F+     + +
Sbjct: 184  PYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAIIFV 243

Query: 1187 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1223
            + + + LFL L L      +L F  ++L  LL F I 
Sbjct: 244  IAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSFGIT 280

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 800  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLL 856
            L LL L + +  LL L +L++FL+L   L        L L    L L L L +L L LL 
Sbjct: 265  LGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLR 324

Query: 857  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 916
             +    +     L +P  L   L +LL+FL + +F     ++   +L LF   +   + L
Sbjct: 325  IVGYFNYSASGLL-VPPALGPMLLILLVFLRIAIFS--SSMIAIALLYLFGGSYNSEIAL 381

Query: 917  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 976
              LL  F  L LL         L   LFL L+ +LL L L+    L +       +    
Sbjct: 382  IALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFL 441

Query: 977  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1007
              LL  +L L LL +   LF +L  F LL L
Sbjct: 442  SGLLSGILVLGLLPYFEALFGLLTTFRLLEL 472

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 832  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLL 888
            L LL L + +  LL L +L++FL+L   L        L L    L L L L +L L LL 
Sbjct: 265  LGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLR 324

Query: 889  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 948
             +    +     L +P  L   L +LL+FL + +F     ++   +L LF   +   + L
Sbjct: 325  IVGYFNYSASGLL-VPPALGPMLLILLVFLRIAIFS--SSMIAIALLYLFGGSYNSEIAL 381

Query: 949  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1008
              LL  F  L LL         L   LFL L+ +LL L L+    L +       +    
Sbjct: 382  IALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFL 441

Query: 1009 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1039
              LL  +L L LL +   LF +L  F LL L
Sbjct: 442  SGLLSGILVLGLLPYFEALFGLLTTFRLLEL 472

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 864  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLL 920
            L LL L + +  LL L +L++FL+L   L        L L    L L L L +L L LL 
Sbjct: 265  LGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLR 324

Query: 921  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 980
             +    +     L +P  L   L +LL+FL + +F     ++   +L LF   +   + L
Sbjct: 325  IVGYFNYSASGLL-VPPALGPMLLILLVFLRIAIFS--SSMIAIALLYLFGGSYNSEIAL 381

Query: 981  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1040
              LL  F  L LL         L   LFL L+ +LL L L+    L +       +    
Sbjct: 382  IALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFL 441

Query: 1041 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1071
              LL  +L L LL +   LF +L  F LL L
Sbjct: 442  SGLLSGILVLGLLPYFEALFGLLTTFRLLEL 472

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 896  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLL 952
            L LL L + +  LL L +L++FL+L   L        L L    L L L L +L L LL 
Sbjct: 265  LGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLR 324

Query: 953  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1012
             +    +     L +P  L   L +LL+FL + +F     ++   +L LF   +   + L
Sbjct: 325  IVGYFNYSASGLL-VPPALGPMLLILLVFLRIAIFS--SSMIAIALLYLFGGSYNSEIAL 381

Query: 1013 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1072
              LL  F  L LL         L   LFL L+ +LL L L+    L +       +    
Sbjct: 382  IALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFL 441

Query: 1073 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1103
              LL  +L L LL +   LF +L  F LL L
Sbjct: 442  SGLLSGILVLGLLPYFEALFGLLTTFRLLEL 472

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 928  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLL 984
            L LL L + +  LL L +L++FL+L   L        L L    L L L L +L L LL 
Sbjct: 265  LGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLR 324

Query: 985  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1044
             +    +     L +P  L   L +LL+FL + +F     ++   +L LF   +   + L
Sbjct: 325  IVGYFNYSASGLL-VPPALGPMLLILLVFLRIAIFS--SSMIAIALLYLFGGSYNSEIAL 381

Query: 1045 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1104
              LL  F  L LL         L   LFL L+ +LL L L+    L +       +    
Sbjct: 382  IALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFL 441

Query: 1105 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1135
              LL  +L L LL +   LF +L  F LL L
Sbjct: 442  SGLLSGILVLGLLPYFEALFGLLTTFRLLEL 472

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 960  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLL 1016
            L LL L + +  LL L +L++FL+L   L        L L    L L L L +L L LL 
Sbjct: 265  LGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLR 324

Query: 1017 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1076
             +    +     L +P  L   L +LL+FL + +F     ++   +L LF   +   + L
Sbjct: 325  IVGYFNYSASGLL-VPPALGPMLLILLVFLRIAIFS--SSMIAIALLYLFGGSYNSEIAL 381

Query: 1077 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1136
              LL  F  L LL         L   LFL L+ +LL L L+    L +       +    
Sbjct: 382  IALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFL 441

Query: 1137 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1167
              LL  +L L LL +   LF +L  F LL L
Sbjct: 442  SGLLSGILVLGLLPYFEALFGLLTTFRLLEL 472

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 992  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLL 1048
            L LL L + +  LL L +L++FL+L   L        L L    L L L L +L L LL 
Sbjct: 265  LGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLR 324

Query: 1049 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1108
             +    +     L +P  L   L +LL+FL + +F     ++   +L LF   +   + L
Sbjct: 325  IVGYFNYSASGLL-VPPALGPMLLILLVFLRIAIFS--SSMIAIALLYLFGGSYNSEIAL 381

Query: 1109 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1168
              LL  F  L LL         L   LFL L+ +LL L L+    L +       +    
Sbjct: 382  IALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFL 441

Query: 1169 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1199
              LL  +L L LL +   LF +L  F LL L
Sbjct: 442  SGLLSGILVLGLLPYFEALFGLLTTFRLLEL 472

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 1024 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLL 1080
            L LL L + +  LL L +L++FL+L   L        L L    L L L L +L L LL 
Sbjct: 265  LGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLR 324

Query: 1081 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1140
             +    +     L +P  L   L +LL+FL + +F     ++   +L LF   +   + L
Sbjct: 325  IVGYFNYSASGLL-VPPALGPMLLILLVFLRIAIFS--SSMIAIALLYLFGGSYNSEIAL 381

Query: 1141 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1200
              LL  F  L LL         L   LFL L+ +LL L L+    L +       +    
Sbjct: 382  IALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFL 441

Query: 1201 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1231
              LL  +L L LL +   LF +L  F LL L
Sbjct: 442  SGLLSGILVLGLLPYFEALFGLLTTFRLLEL 472

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 1056 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLL 1112
            L LL L + +  LL L +L++FL+L   L        L L    L L L L +L L LL 
Sbjct: 265  LGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLR 324

Query: 1113 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1172
             +    +     L +P  L   L +LL+FL + +F     ++   +L LF   +   + L
Sbjct: 325  IVGYFNYSASGLL-VPPALGPMLLILLVFLRIAIFS--SSMIAIALLYLFGGSYNSEIAL 381

Query: 1173 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1232
              LL  F  L LL         L   LFL L+ +LL L L+    L +       +    
Sbjct: 382  IALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFL 441

Query: 1233 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1263
              LL  +L L LL +   LF +L  F LL L
Sbjct: 442  SGLLSGILVLGLLPYFEALFGLLTTFRLLEL 472

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 1088 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLL 1144
            L LL L + +  LL L +L++FL+L   L        L L    L L L L +L L LL 
Sbjct: 265  LGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLR 324

Query: 1145 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1204
             +    +     L +P  L   L +LL+FL + +F     ++   +L LF   +   + L
Sbjct: 325  IVGYFNYSASGLL-VPPALGPMLLILLVFLRIAIFS--SSMIAIALLYLFGGSYNSEIAL 381

Query: 1205 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1264
              LL  F  L LL         L   LFL L+ +LL L L+    L +       +    
Sbjct: 382  IALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFL 441

Query: 1265 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1295
              LL  +L L LL +   LF +L  F LL L
Sbjct: 442  SGLLSGILVLGLLPYFEALFGLLTTFRLLEL 472

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 6/211 (2%)

Query: 1120 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLL 1176
            L LL L + +  LL L +L++FL+L   L        L L    L L L L +L L LL 
Sbjct: 265  LGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLR 324

Query: 1177 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1236
             +    +     L +P  L   L +LL+FL + +F     ++   +L LF   +   + L
Sbjct: 325  IVGYFNYSASGLL-VPPALGPMLLILLVFLRIAIFS--SSMIAIALLYLFGGSYNSEIAL 381

Query: 1237 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1296
              LL  F  L LL         L   LFL L+ +LL L L+    L +       +    
Sbjct: 382  IALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFL 441

Query: 1297 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1327
              LL  +L L LL +   LF +L  F LL L
Sbjct: 442  SGLLSGILVLGLLPYFEALFGLLTTFRLLEL 472

Length = 700

>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed

 Score = 46.8 bits (112), Expect = 6e-05
 Identities = 62/216 (28%), Positives = 81/216 (37%), Gaps = 14/216 (6%)

Query: 791 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 850
           LL    L  LL L       L    F L    LL L  LL+LLL        L+ FL+  
Sbjct: 1   LLLRGWLRLLLALLAGALGTLAFAPFDLWPLALLSLAGLLWLLLGASPKQAALIGFLWGF 60

Query: 851 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 910
             F    L  +   +  F  +P +L   L +LLL   L L+  LF  L   + P   L  
Sbjct: 61  GYFGSG-LSWIYVSIHTFGGMPAWLAPLL-VLLLAAYLALYPALFAALWRRLWPKSGLRR 118

Query: 911 LFLLLLFLLLFLFLLLFLLLLF--------LILPLFLL----LFLFLLLLFLLLFLFLLL 958
              L    +L  +L  +LL  F         I    L     +F    L FL++ +  LL
Sbjct: 119 ALALPALWVLTEWLRGWLLTGFPWLALGYSQIPDGPLAQLAPIFGVYGLSFLVVLVNALL 178

Query: 959 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 994
            L L+     L LL  L LLL  L   L  L +   
Sbjct: 179 ALALIKRRWRLALLALLLLLLAALGYGLRRLQWTTP 214

Length = 505

>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed

 Score = 46.8 bits (112), Expect = 6e-05
 Identities = 62/216 (28%), Positives = 81/216 (37%), Gaps = 14/216 (6%)

Query: 951  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1010
            LL    L  LL L       L    F L    LL L  LL+LLL        L+ FL+  
Sbjct: 1    LLLRGWLRLLLALLAGALGTLAFAPFDLWPLALLSLAGLLWLLLGASPKQAALIGFLWGF 60

Query: 1011 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1070
              F    L  +   +  F  +P +L   L +LLL   L L+  LF  L   + P   L  
Sbjct: 61   GYFGSG-LSWIYVSIHTFGGMPAWLAPLL-VLLLAAYLALYPALFAALWRRLWPKSGLRR 118

Query: 1071 LFLLLLFLLLFLFLLLFLLLLF--------LILPLFLL----LFLFLLLLFLLLFLFLLL 1118
               L    +L  +L  +LL  F         I    L     +F    L FL++ +  LL
Sbjct: 119  ALALPALWVLTEWLRGWLLTGFPWLALGYSQIPDGPLAQLAPIFGVYGLSFLVVLVNALL 178

Query: 1119 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1154
             L L+     L LL  L LLL  L   L  L +   
Sbjct: 179  ALALIKRRWRLALLALLLLLLAALGYGLRRLQWTTP 214

Length = 505

>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed

 Score = 46.8 bits (112), Expect = 6e-05
 Identities = 62/216 (28%), Positives = 81/216 (37%), Gaps = 14/216 (6%)

Query: 1111 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1170
            LL    L  LL L       L    F L    LL L  LL+LLL        L+ FL+  
Sbjct: 1    LLLRGWLRLLLALLAGALGTLAFAPFDLWPLALLSLAGLLWLLLGASPKQAALIGFLWGF 60

Query: 1171 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1230
              F    L  +   +  F  +P +L   L +LLL   L L+  LF  L   + P   L  
Sbjct: 61   GYFGSG-LSWIYVSIHTFGGMPAWLAPLL-VLLLAAYLALYPALFAALWRRLWPKSGLRR 118

Query: 1231 LFLLLLFLLLFLFLLLFLLLLF--------LILPLFLL----LFLFLLLLFLLLFLFLLL 1278
               L    +L  +L  +LL  F         I    L     +F    L FL++ +  LL
Sbjct: 119  ALALPALWVLTEWLRGWLLTGFPWLALGYSQIPDGPLAQLAPIFGVYGLSFLVVLVNALL 178

Query: 1279 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1314
             L L+     L LL  L LLL  L   L  L +   
Sbjct: 179  ALALIKRRWRLALLALLLLLLAALGYGLRRLQWTTP 214

Length = 505

>gnl|CDD|224748 COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]

 Score = 46.7 bits (111), Expect = 7e-05
 Identities = 70/256 (27%), Positives = 89/256 (34%), Gaps = 1/256 (0%)

Query: 1087 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1146
            F+    L + LF +L  FL+   LL      +  L  FL   L  +L   L++L L   L
Sbjct: 45   FVGRGVLGVDLFFVLSGFLITRSLLRSAAAPVISLAAFLARRLRRILPALLVVLLLTAAL 104

Query: 1147 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLF 1205
             L L        L   L    +L  L L L +        LL  +L L+ L       L 
Sbjct: 105  LLALLPPGASAALWADLAALFYLSNLLLTLAVGAYFAASGLLSPLLHLWSLSVEEQFYLL 164

Query: 1206 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1265
              L L LL  +     +L L L L  F LLL L  F             L  FLL  L  
Sbjct: 165  FPLLLLLLRRVRFALALLLLLLALASFFLLLALGPFATGAALYYGTATRLWEFLLGALAA 224

Query: 1266 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1325
            L          LL   L  L L L LL    +          LLL   L   +L L +  
Sbjct: 225  LWRPKRRPWPALLAAALALLGLALLLLAVALIPGSSPFFPGDLLLVPSLGAALLVLAVAA 284

Query: 1326 FLFLLLLFLFLLLLFL 1341
             +    L     L+FL
Sbjct: 285  LVGGSRLLSSRPLVFL 300

Length = 386

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 7e-05
 Identities = 64/208 (30%), Positives = 93/208 (44%), Gaps = 19/208 (9%)

Query: 836  FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 895
            ++IL L  LL L + +L LL  L L++FL+LLF +        L L    LLL+L L + 
Sbjct: 259  YVILDLLGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAIL 318

Query: 896  LLLLFLI------------LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 943
             L L  I            +P  L   L +LL+FL + +F     ++   +L LF   + 
Sbjct: 319  TLSLLRIVGYFNYSASGLLVPPALGPMLLILLVFLRIAIF--SSSMIAIALLYLFGGSYN 376

Query: 944  FLLLLFLLLFLFLLLFLL-----LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 998
              + L  LL  F  L LL        ++     L  + +LLL  L+F F L +   L   
Sbjct: 377  SEIALIALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDA 436

Query: 999  LPLFLLLFLFLLLLFLLLFLFLLLFLLL 1026
            +  FL   L  +L+  LL  F  LF LL
Sbjct: 437  IFAFLSGLLSGILVLGLLPYFEALFGLL 464

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 7e-05
 Identities = 64/208 (30%), Positives = 93/208 (44%), Gaps = 19/208 (9%)

Query: 932  FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 991
            ++IL L  LL L + +L LL  L L++FL+LLF +        L L    LLL+L L + 
Sbjct: 259  YVILDLLGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAIL 318

Query: 992  LLLLFLI------------LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1039
             L L  I            +P  L   L +LL+FL + +F     ++   +L LF   + 
Sbjct: 319  TLSLLRIVGYFNYSASGLLVPPALGPMLLILLVFLRIAIF--SSSMIAIALLYLFGGSYN 376

Query: 1040 FLLLLFLLLFLFLLLFLL-----LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1094
              + L  LL  F  L LL        ++     L  + +LLL  L+F F L +   L   
Sbjct: 377  SEIALIALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDA 436

Query: 1095 LPLFLLLFLFLLLLFLLLFLFLLLFLLL 1122
            +  FL   L  +L+  LL  F  LF LL
Sbjct: 437  IFAFLSGLLSGILVLGLLPYFEALFGLL 464

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 7e-05
 Identities = 64/208 (30%), Positives = 93/208 (44%), Gaps = 19/208 (9%)

Query: 1028 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1087
            ++IL L  LL L + +L LL  L L++FL+LLF +        L L    LLL+L L + 
Sbjct: 259  YVILDLLGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAIL 318

Query: 1088 LLLLFLI------------LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1135
             L L  I            +P  L   L +LL+FL + +F     ++   +L LF   + 
Sbjct: 319  TLSLLRIVGYFNYSASGLLVPPALGPMLLILLVFLRIAIF--SSSMIAIALLYLFGGSYN 376

Query: 1136 FLLLLFLLLFLFLLLFLL-----LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1190
              + L  LL  F  L LL        ++     L  + +LLL  L+F F L +   L   
Sbjct: 377  SEIALIALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDA 436

Query: 1191 LPLFLLLFLFLLLLFLLLFLFLLLFLLL 1218
            +  FL   L  +L+  LL  F  LF LL
Sbjct: 437  IFAFLSGLLSGILVLGLLPYFEALFGLL 464

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 7e-05
 Identities = 64/208 (30%), Positives = 93/208 (44%), Gaps = 19/208 (9%)

Query: 1124 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1183
            ++IL L  LL L + +L LL  L L++FL+LLF +        L L    LLL+L L + 
Sbjct: 259  YVILDLLGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAIL 318

Query: 1184 LLLLFLI------------LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1231
             L L  I            +P  L   L +LL+FL + +F     ++   +L LF   + 
Sbjct: 319  TLSLLRIVGYFNYSASGLLVPPALGPMLLILLVFLRIAIF--SSSMIAIALLYLFGGSYN 376

Query: 1232 FLLLLFLLLFLFLLLFLL-----LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1286
              + L  LL  F  L LL        ++     L  + +LLL  L+F F L +   L   
Sbjct: 377  SEIALIALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDA 436

Query: 1287 LPLFLLLFLFLLLLFLLLFLFLLLFLLL 1314
            +  FL   L  +L+  LL  F  LF LL
Sbjct: 437  IFAFLSGLLSGILVLGLLPYFEALFGLL 464

Length = 700

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 47.0 bits (112), Expect = 8e-05
 Identities = 60/201 (29%), Positives = 85/201 (42%), Gaps = 6/201 (2%)

Query: 778 FLLLFLFLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLLFLFLLLFLLL 834
             LL L +L++FL+L   L        L L    L L L L +L L LL  +    +   
Sbjct: 275 LPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLRIVGYFNYSAS 334

Query: 835 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 894
             L +P  L   L +LL+FL + +F     ++   +L LF   +   + L  LL  F  L
Sbjct: 335 GLL-VPPALGPMLLILLVFLRIAIFS--SSMIAIALLYLFGGSYNSEIALIALLSSFSAL 391

Query: 895 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 954
            LL         L   LFL L+ +LL L L+    L +       +      LL  +L L
Sbjct: 392 VLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFLSGLLSGILVL 451

Query: 955 FLLLFLLLLFLILPLFLLLFL 975
            LL +   LF +L  F LL L
Sbjct: 452 GLLPYFEALFGLLTTFRLLEL 472

Length = 700

>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion]

 Score = 46.3 bits (110), Expect = 8e-05
 Identities = 44/163 (26%), Positives = 55/163 (33%), Gaps = 7/163 (4%)

Query: 779 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 838
           L+L   L+L     +L +L    +L   L      F         L L LLL   L  L 
Sbjct: 14  LVLLATLILFLSTPWLRVLGSQAVLLDFLGRPFGFFGLQFWAQEFLLLALLLIGALFGLF 73

Query: 839 LPLFLLLFLFL-------LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 891
           L   LL  +F        +L  L   L   LF L         L L L   LLFLL+ L 
Sbjct: 74  LITLLLGRVFCGWVCPQGVLTELAEGLRNKLFKLQKAPWPLRKLRLKLLKYLLFLLILLL 133

Query: 892 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 934
           LL   +  +      LL  L       L      +F  LL   
Sbjct: 134 LLYSWIGAYFAPVEPLLGRLLTGGFGRLAIGLFAVFAFLLLGF 176

Length = 386

>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion]

 Score = 46.3 bits (110), Expect = 8e-05
 Identities = 44/163 (26%), Positives = 55/163 (33%), Gaps = 7/163 (4%)

Query: 875  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 934
            L+L   L+L     +L +L    +L   L      F         L L LLL   L  L 
Sbjct: 14   LVLLATLILFLSTPWLRVLGSQAVLLDFLGRPFGFFGLQFWAQEFLLLALLLIGALFGLF 73

Query: 935  LPLFLLLFLFL-------LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 987
            L   LL  +F        +L  L   L   LF L         L L L   LLFLL+ L 
Sbjct: 74   LITLLLGRVFCGWVCPQGVLTELAEGLRNKLFKLQKAPWPLRKLRLKLLKYLLFLLILLL 133

Query: 988  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1030
            LL   +  +      LL  L       L      +F  LL   
Sbjct: 134  LLYSWIGAYFAPVEPLLGRLLTGGFGRLAIGLFAVFAFLLLGF 176

Length = 386

>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion]

 Score = 46.3 bits (110), Expect = 8e-05
 Identities = 44/163 (26%), Positives = 55/163 (33%), Gaps = 7/163 (4%)

Query: 971  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1030
            L+L   L+L     +L +L    +L   L      F         L L LLL   L  L 
Sbjct: 14   LVLLATLILFLSTPWLRVLGSQAVLLDFLGRPFGFFGLQFWAQEFLLLALLLIGALFGLF 73

Query: 1031 LPLFLLLFLFL-------LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1083
            L   LL  +F        +L  L   L   LF L         L L L   LLFLL+ L 
Sbjct: 74   LITLLLGRVFCGWVCPQGVLTELAEGLRNKLFKLQKAPWPLRKLRLKLLKYLLFLLILLL 133

Query: 1084 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1126
            LL   +  +      LL  L       L      +F  LL   
Sbjct: 134  LLYSWIGAYFAPVEPLLGRLLTGGFGRLAIGLFAVFAFLLLGF 176

Length = 386

>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion]

 Score = 46.3 bits (110), Expect = 8e-05
 Identities = 44/163 (26%), Positives = 55/163 (33%), Gaps = 7/163 (4%)

Query: 1067 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1126
            L+L   L+L     +L +L    +L   L      F         L L LLL   L  L 
Sbjct: 14   LVLLATLILFLSTPWLRVLGSQAVLLDFLGRPFGFFGLQFWAQEFLLLALLLIGALFGLF 73

Query: 1127 LPLFLLLFLFL-------LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1179
            L   LL  +F        +L  L   L   LF L         L L L   LLFLL+ L 
Sbjct: 74   LITLLLGRVFCGWVCPQGVLTELAEGLRNKLFKLQKAPWPLRKLRLKLLKYLLFLLILLL 133

Query: 1180 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1222
            LL   +  +      LL  L       L      +F  LL   
Sbjct: 134  LLYSWIGAYFAPVEPLLGRLLTGGFGRLAIGLFAVFAFLLLGF 176

Length = 386

>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion]

 Score = 46.3 bits (110), Expect = 8e-05
 Identities = 44/163 (26%), Positives = 55/163 (33%), Gaps = 7/163 (4%)

Query: 1163 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1222
            L+L   L+L     +L +L    +L   L      F         L L LLL   L  L 
Sbjct: 14   LVLLATLILFLSTPWLRVLGSQAVLLDFLGRPFGFFGLQFWAQEFLLLALLLIGALFGLF 73

Query: 1223 LPLFLLLFLFL-------LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1275
            L   LL  +F        +L  L   L   LF L         L L L   LLFLL+ L 
Sbjct: 74   LITLLLGRVFCGWVCPQGVLTELAEGLRNKLFKLQKAPWPLRKLRLKLLKYLLFLLILLL 133

Query: 1276 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1318
            LL   +  +      LL  L       L      +F  LL   
Sbjct: 134  LLYSWIGAYFAPVEPLLGRLLTGGFGRLAIGLFAVFAFLLLGF 176

Length = 386

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 782 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 839
            + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238 LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 840 PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 895
             F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298 EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 814 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 871
            + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238 LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 872 PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 927
             F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298 EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 846 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 903
            + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238 LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 904 PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 959
             F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298 EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 878 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 935
            + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238 LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 936 PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 991
             F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298 EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 910  FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 967
             + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238  LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 968  PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1023
              F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298  EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 942  FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 999
             + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238  LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 1000 PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1055
              F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298  EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 974  FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 1031
             + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238  LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 1032 PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1087
              F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298  EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 1006 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 1063
             + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238  LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 1064 PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1119
              F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298  EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 1038 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 1095
             + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238  LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 1096 PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1151
              F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298  EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 1070 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 1127
             + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238  LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 1128 PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1183
              F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298  EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 1102 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 1159
             + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238  LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 1160 PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1215
              F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298  EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 1134 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 1191
             + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238  LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 1192 PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1247
              F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298  EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 1166 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 1223
             + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238  LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 1224 PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1279
              F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298  EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 1198 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 1255
             + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238  LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 1256 PLFLLLFLFLLLLFLLLFLFLLLFL----LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1311
              F+  F  + LL ++LF+  LL L     + +L+     L    L +LF +    L  F
Sbjct: 298  EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPAF 357

Length = 436

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 46.6 bits (111), Expect = 9e-05
 Identities = 50/254 (19%), Positives = 90/254 (35%), Gaps = 11/254 (4%)

Query: 1112 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1171
            L +FL L +L  +L+        +   +L  L    + L      + L +  LLF+  LL
Sbjct: 152  LAIFLPLLVLFFWLLAIKTGSNRIIYAVLAGLPLFLMALAWGGYQVFLLILALLFILALL 211

Query: 1172 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1231
            +       LL+ +   +LI  +   +  +L + F  +     +   L+F +  L      
Sbjct: 212  IMGRFEPKLLILVGFSYLIATIVGGIIQYLFVGFAKVRSSEHMGAFLVFGLAQLLAFG-S 270

Query: 1232 FLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1288
             +  ++L  + F  L    LFL+L      L L   L  + L    F  LF      I  
Sbjct: 271  VVKGVYLSFYQFETLTYPGLFLVLGLIGPVLFLLGLLGFIALWTGRFYSLFDYAKIDIPT 330

Query: 1289 LFLLLF---LFLLLLFLLLFLFLLLFLLLLFLILP----LFLLLFLFLLLLFLFLLLLFL 1341
            + L+       L  L   L   +  F L L         L +  F++ +    FL ++  
Sbjct: 331  IILISEWQPTGLYALLAGLRFLIFTFPLGLIFCGLLLEDLAVFSFIYSVSQLRFLGVMVF 390

Query: 1342 LSSFSSSSSSSFSY 1355
                + +   +   
Sbjct: 391  PIMLTLAPVIALIA 404

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 46.3 bits (110), Expect = 9e-05
 Identities = 92/444 (20%), Positives = 146/444 (32%), Gaps = 31/444 (6%)

Query: 779  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 838
            L LF  L  L +   +   +F L           +  +L+   ++LFL L    L   + 
Sbjct: 14   LGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIP 73

Query: 839  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 898
                   +    L   L FL   L+LL   + L    +     L         L +  LL
Sbjct: 74   SAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLL 133

Query: 899  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 958
            + LI    + L   L L  +     +   + +L +I+ L  ++       F    LF   
Sbjct: 134  IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPF 193

Query: 959  FLLLLFLILPLFLLLFLFLL------------------------LLFLLLFLFLLLFLLL 994
                      L  +L  F                          ++  LL + +L  L  
Sbjct: 194  NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGA 253

Query: 995  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1054
            L ++  L             L    L        +I+ +  LL LF  LL  +L +  +L
Sbjct: 254  LVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313

Query: 1055 FLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1112
            + +    +LP F   +       +  L+   ++  +LLL   L       L  L     L
Sbjct: 314  YAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFL 373

Query: 1113 FLFLLLFLLLLFLI-----LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1167
              +LL+ L LL L      L     L L  L+  L +   LLL   L    LP  LL  +
Sbjct: 374  IAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLYALYASGLPPLLLGVI 433

Query: 1168 FLLLLFLLLFLFLLLFLLLLFLIL 1191
             +    ++  L  L    LL  IL
Sbjct: 434  LIAGGIIIYLLVYLGLGRLLSAIL 457

Length = 466

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 46.3 bits (110), Expect = 9e-05
 Identities = 92/444 (20%), Positives = 146/444 (32%), Gaps = 31/444 (6%)

Query: 811  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 870
            L LF  L  L +   +   +F L           +  +L+   ++LFL L    L   + 
Sbjct: 14   LGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIP 73

Query: 871  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 930
                   +    L   L FL   L+LL   + L    +     L         L +  LL
Sbjct: 74   SAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLL 133

Query: 931  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 990
            + LI    + L   L L  +     +   + +L +I+ L  ++       F    LF   
Sbjct: 134  IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPF 193

Query: 991  FLLLLFLILPLFLLLFLFLL------------------------LLFLLLFLFLLLFLLL 1026
                      L  +L  F                          ++  LL + +L  L  
Sbjct: 194  NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGA 253

Query: 1027 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1086
            L ++  L             L    L        +I+ +  LL LF  LL  +L +  +L
Sbjct: 254  LVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313

Query: 1087 FLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1144
            + +    +LP F   +       +  L+   ++  +LLL   L       L  L     L
Sbjct: 314  YAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFL 373

Query: 1145 FLFLLLFLLLLFLI-----LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1199
              +LL+ L LL L      L     L L  L+  L +   LLL   L    LP  LL  +
Sbjct: 374  IAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLYALYASGLPPLLLGVI 433

Query: 1200 FLLLLFLLLFLFLLLFLLLLFLIL 1223
             +    ++  L  L    LL  IL
Sbjct: 434  LIAGGIIIYLLVYLGLGRLLSAIL 457

Length = 466

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 46.3 bits (110), Expect = 9e-05
 Identities = 92/444 (20%), Positives = 146/444 (32%), Gaps = 31/444 (6%)

Query: 843  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 902
            L LF  L  L +   +   +F L           +  +L+   ++LFL L    L   + 
Sbjct: 14   LGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIP 73

Query: 903  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 962
                   +    L   L FL   L+LL   + L    +     L         L +  LL
Sbjct: 74   SAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLL 133

Query: 963  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1022
            + LI    + L   L L  +     +   + +L +I+ L  ++       F    LF   
Sbjct: 134  IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPF 193

Query: 1023 FLLLLFLILPLFLLLFLFLL------------------------LLFLLLFLFLLLFLLL 1058
                      L  +L  F                          ++  LL + +L  L  
Sbjct: 194  NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGA 253

Query: 1059 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1118
            L ++  L             L    L        +I+ +  LL LF  LL  +L +  +L
Sbjct: 254  LVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313

Query: 1119 FLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1176
            + +    +LP F   +       +  L+   ++  +LLL   L       L  L     L
Sbjct: 314  YAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFL 373

Query: 1177 FLFLLLFLLLLFLI-----LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1231
              +LL+ L LL L      L     L L  L+  L +   LLL   L    LP  LL  +
Sbjct: 374  IAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLYALYASGLPPLLLGVI 433

Query: 1232 FLLLLFLLLFLFLLLFLLLLFLIL 1255
             +    ++  L  L    LL  IL
Sbjct: 434  LIAGGIIIYLLVYLGLGRLLSAIL 457

Length = 466

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 46.3 bits (110), Expect = 9e-05
 Identities = 92/444 (20%), Positives = 146/444 (32%), Gaps = 31/444 (6%)

Query: 875  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 934
            L LF  L  L +   +   +F L           +  +L+   ++LFL L    L   + 
Sbjct: 14   LGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIP 73

Query: 935  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 994
                   +    L   L FL   L+LL   + L    +     L         L +  LL
Sbjct: 74   SAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLL 133

Query: 995  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1054
            + LI    + L   L L  +     +   + +L +I+ L  ++       F    LF   
Sbjct: 134  IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPF 193

Query: 1055 FLLLLFLILPLFLLLFLFLL------------------------LLFLLLFLFLLLFLLL 1090
                      L  +L  F                          ++  LL + +L  L  
Sbjct: 194  NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGA 253

Query: 1091 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1150
            L ++  L             L    L        +I+ +  LL LF  LL  +L +  +L
Sbjct: 254  LVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313

Query: 1151 FLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1208
            + +    +LP F   +       +  L+   ++  +LLL   L       L  L     L
Sbjct: 314  YAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFL 373

Query: 1209 FLFLLLFLLLLFLI-----LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1263
              +LL+ L LL L      L     L L  L+  L +   LLL   L    LP  LL  +
Sbjct: 374  IAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLYALYASGLPPLLLGVI 433

Query: 1264 FLLLLFLLLFLFLLLFLLLLFLIL 1287
             +    ++  L  L    LL  IL
Sbjct: 434  LIAGGIIIYLLVYLGLGRLLSAIL 457

Length = 466

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 46.3 bits (110), Expect = 9e-05
 Identities = 92/444 (20%), Positives = 146/444 (32%), Gaps = 31/444 (6%)

Query: 907  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 966
            L LF  L  L +   +   +F L           +  +L+   ++LFL L    L   + 
Sbjct: 14   LGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIP 73

Query: 967  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1026
                   +    L   L FL   L+LL   + L    +     L         L +  LL
Sbjct: 74   SAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLL 133

Query: 1027 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1086
            + LI    + L   L L  +     +   + +L +I+ L  ++       F    LF   
Sbjct: 134  IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPF 193

Query: 1087 FLLLLFLILPLFLLLFLFLL------------------------LLFLLLFLFLLLFLLL 1122
                      L  +L  F                          ++  LL + +L  L  
Sbjct: 194  NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGA 253

Query: 1123 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1182
            L ++  L             L    L        +I+ +  LL LF  LL  +L +  +L
Sbjct: 254  LVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313

Query: 1183 FLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1240
            + +    +LP F   +       +  L+   ++  +LLL   L       L  L     L
Sbjct: 314  YAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFL 373

Query: 1241 FLFLLLFLLLLFLI-----LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1295
              +LL+ L LL L      L     L L  L+  L +   LLL   L    LP  LL  +
Sbjct: 374  IAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLYALYASGLPPLLLGVI 433

Query: 1296 FLLLLFLLLFLFLLLFLLLLFLIL 1319
             +    ++  L  L    LL  IL
Sbjct: 434  LIAGGIIIYLLVYLGLGRLLSAIL 457

Length = 466

>gnl|CDD|226122 COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]

 Score = 46.2 bits (110), Expect = 9e-05
 Identities = 59/240 (24%), Positives = 91/240 (37%), Gaps = 3/240 (1%)

Query: 901  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 960
            LI+P      ++ +L FLL      L L  +     L+ L+ LF   L LL    L+  L
Sbjct: 74   LIVPYIFFFLIYSILYFLLRKFNSELTLNFILPGWELWFLVILFFWFLPLLFITKLIYNL 133

Query: 961  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1020
            + ++L + + L++ + +   F+ L L          +  P FLL  LF  L F    L  
Sbjct: 134  IAVWLAVSVSLIILILVGFFFIPLSL---GSFSRTLVFFPFFLLGTLFAKLHFWFGGLLR 190

Query: 1021 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1080
                L + +   L  ++FL + L F   +L   +       I    LL  L L L    L
Sbjct: 191  TYKGLRVNIKSFLAAVIFLAVGLAFNYSWLLGSMPYSSFGNIFVGGLLRALVLGLALNAL 250

Query: 1081 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1140
              F      L  L+  L        LL   +  +  L F +L      L  L  L ++ L
Sbjct: 251  VRFAAKIPQLRKLVTKLGKNTLYIYLLHGFVFKVLRLQFGILNLSTSYLAFLPILLIVSL 310

Length = 343

>gnl|CDD|226122 COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]

 Score = 46.2 bits (110), Expect = 9e-05
 Identities = 59/240 (24%), Positives = 91/240 (37%), Gaps = 3/240 (1%)

Query: 1029 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1088
            LI+P      ++ +L FLL      L L  +     L+ L+ LF   L LL    L+  L
Sbjct: 74   LIVPYIFFFLIYSILYFLLRKFNSELTLNFILPGWELWFLVILFFWFLPLLFITKLIYNL 133

Query: 1089 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1148
            + ++L + + L++ + +   F+ L L          +  P FLL  LF  L F    L  
Sbjct: 134  IAVWLAVSVSLIILILVGFFFIPLSL---GSFSRTLVFFPFFLLGTLFAKLHFWFGGLLR 190

Query: 1149 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1208
                L + +   L  ++FL + L F   +L   +       I    LL  L L L    L
Sbjct: 191  TYKGLRVNIKSFLAAVIFLAVGLAFNYSWLLGSMPYSSFGNIFVGGLLRALVLGLALNAL 250

Query: 1209 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1268
              F      L  L+  L        LL   +  +  L F +L      L  L  L ++ L
Sbjct: 251  VRFAAKIPQLRKLVTKLGKNTLYIYLLHGFVFKVLRLQFGILNLSTSYLAFLPILLIVSL 310

Length = 343

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 46.4 bits (111), Expect = 1e-04
 Identities = 51/189 (26%), Positives = 76/189 (40%), Gaps = 23/189 (12%)

Query: 1180 LLLFLLLLFLILPLFLLLFLFLL-LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1238
            +L+ L ++ L+L L  LL       L+     +L +F   L   + LFLL+FL       
Sbjct: 5    VLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIF----- 59

Query: 1239 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1298
              FLFL L LLL +   P F+ L        L  +  ++L    L L+    +L  L  L
Sbjct: 60   --FLFLFLNLLLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLLLGISLVLGLLAGL 117

Query: 1299 LLF-----LLLFLF--------LLLFLLLLFLI--LPLFLLLFLFLLLLFLFLLLLFLLS 1343
                    +LLFL          +    + F +  LP   LL  +LL L L  L+  LL+
Sbjct: 118  SASSRWETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLLALLLLALIATLLT 177

Query: 1344 SFSSSSSSS 1352
             +       
Sbjct: 178  YYLYGGIRL 186

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|177158 MTH00095, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 46.1 bits (110), Expect = 1e-04
 Identities = 102/516 (19%), Positives = 168/516 (32%), Gaps = 32/516 (6%)

Query: 875  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 934
            + + +FL+L F    L  +LFL  + L L      FL L   F    L   L LLL+ L 
Sbjct: 1    MNILIFLILFFFFFLLLFILFLPFMKLNLFFLEWDFLSLKFNFYFNSLLFSLILLLVTLS 60

Query: 935  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 994
            + +F   ++   L F   +  LL+F+  +F++     +  + L    L +  F L+    
Sbjct: 61   VLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLVLFYN 120

Query: 995  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1054
             +      +   L   +    +FLF   F+   +            +L+L L  F     
Sbjct: 121  NWDSNSGAMNTALTNRIGDFFIFLFFSGFIFSSYYFFSFSFFSSSMILMLLLTSFTKSAQ 180

Query: 1055 FLLLLFL-------------------ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1095
            F    +L                   +    +LL  F  L+  +  + ++L + L  +  
Sbjct: 181  FPFSSWLPKAMSAPTPVSSLVHSSTLVTAGLILLMNFSYLILNMNVMKIMLLIGLFTMFF 240

Query: 1096 PLFLLLF-------LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL--LFL 1146
                 L        + L  L  + F  L     L F+     L   LF   LF+     +
Sbjct: 241  SSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLI 300

Query: 1147 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1206
                             L     L L + LF    L      +   L L LF F   +  
Sbjct: 301  HSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIF 360

Query: 1207 LLFLFLLLFLLLLF----LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1262
               +F     L       L    FL     + +    + +  L  +L+ F +  L+ L F
Sbjct: 361  FSLMFFFSVFLTFGYSYRLWKSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVFFLWWLNF 420

Query: 1263 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1322
              L L  L L+L   + L  LF+I+      F  L       F        +++ +  L 
Sbjct: 421  NLLNLPSLFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLK 480

Query: 1323 LLLFLFLLLLFLFLLLLFLLSSFSSSSSSSFSYSSS 1358
                      +         S F  S   SF Y+S 
Sbjct: 481  FFDLFLNKFGYKGFNFFSSFSFFFFSYMKSFKYNSL 516

Length = 527

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 106/351 (30%), Positives = 124/351 (35%), Gaps = 7/351 (1%)

Query: 776  ISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 835
            +  L L  FL  L   L    L  L     +      L +    L   L   L  +L   
Sbjct: 1    LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 836  FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 895
            F    + LL  L   L  LLL     L+LLL+   L       L+     L+   F    
Sbjct: 61   FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120

Query: 896  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 955
                  +      L   L  L   L    L +  L  ++  L LLL L LL L  LL L 
Sbjct: 121  RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLL 180

Query: 956  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL----- 1010
             L F LL F    L   L L+L  +  L      L L L  L   L  LL   L      
Sbjct: 181  ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR 240

Query: 1011 --LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1068
              LL L+  L   L LLLL L   L LLL   LLL F L F F  L  L   L  P    
Sbjct: 241  RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARG 300

Query: 1069 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1119
                L   F  L   L   L  L L    +  +FL L  L LL  L LLL 
Sbjct: 301  TASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 789 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 848
            L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4   LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 849 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 903
            +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64  RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 821 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 880
            L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4   LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 881 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 935
            +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64  RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 853 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 912
            L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4   LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 913 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 967
            +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64  RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 885 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 944
            L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4   LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 945 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 999
            +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64  RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 917  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 976
             L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 977  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1031
             +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 949  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1008
             L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1009 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1063
             +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 981  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1040
             L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1041 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1095
             +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 1013 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1072
             L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1073 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1127
             +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 1045 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1104
             L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1105 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1159
             +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 1077 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1136
             L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1137 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1191
             +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 1109 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1168
             L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1169 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1223
             +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 1141 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1200
             L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1201 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1255
             +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 1173 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1232
             L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1233 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1287
             +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 44/115 (38%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 1205 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1264
             L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1265 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1319
             +LL  LL   LLL L  L        L+ L   L F+L  + LLL+ LLL  +L
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 60/277 (21%), Positives = 104/277 (37%), Gaps = 27/277 (9%)

Query: 1006 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1065
               LL      F    + L L  +   L +LL + ++ L L++  F          ++  
Sbjct: 4    IFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFLMRH 63

Query: 1066 FLLLFLFLLLLFLLLFLFLLLFLLLL-----------------------FLILPLFLLLF 1102
              +  + + +L L+L L L+  L  L                       F   P  L L 
Sbjct: 64   KGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNLFLL 123

Query: 1103 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1162
            LF+  L+ L      LF  ++ ++L     L L+  +  +       + L L  L+L L 
Sbjct: 124  LFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALS 183

Query: 1163 LLLFLFL----LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1218
              + +      +L F+ LFLFL   +     +     L  L  +LL +  F+     + +
Sbjct: 184  PYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAIIFV 243

Query: 1219 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1255
            + + + LFL L L      +L F  ++L  LL F I 
Sbjct: 244  IAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSFGIT 280

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 60/277 (21%), Positives = 104/277 (37%), Gaps = 27/277 (9%)

Query: 1070 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1129
               LL      F    + L L  +   L +LL + ++ L L++  F          ++  
Sbjct: 4    IFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFLMRH 63

Query: 1130 FLLLFLFLLLLFLLLFLFLLLFLLLL-----------------------FLILPLFLLLF 1166
              +  + + +L L+L L L+  L  L                       F   P  L L 
Sbjct: 64   KGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNLFLL 123

Query: 1167 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1226
            LF+  L+ L      LF  ++ ++L     L L+  +  +       + L L  L+L L 
Sbjct: 124  LFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALS 183

Query: 1227 LLLFLFL----LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1282
              + +      +L F+ LFLFL   +     +     L  L  +LL +  F+     + +
Sbjct: 184  PYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAIIFV 243

Query: 1283 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1319
            + + + LFL L L      +L F  ++L  LL F I 
Sbjct: 244  IAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSFGIT 280

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 46.3 bits (110), Expect = 1e-04
 Identities = 90/452 (19%), Positives = 149/452 (32%), Gaps = 16/452 (3%)

Query: 790  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 849
            L LF  L    +   +   +F L      L    +  +L+  +++LFL L    L     
Sbjct: 14   LGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIP 73

Query: 850  LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 909
                   +    L   L FL   L+LL ++  L    +     L +L     +L +  LL
Sbjct: 74   SAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLL 133

Query: 910  FLFLLLLFLLLFLFLLLF--LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 967
             + + L  + L   L L        +   + +L  + LL+  +L           LF   
Sbjct: 134  IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPF 193

Query: 968  PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI-----------LPLFLLLFLFLLLLFLLL 1016
                  F  +L   LL F     F  +  L              + L L + L+L  L  
Sbjct: 194  NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGA 253

Query: 1017 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1076
             + + +              L L  L         ++  L LL L   L   +     +L
Sbjct: 254  LVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313

Query: 1077 FLLL---FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1133
            + +     L      +      P+  L+   ++ L LLL   L        + L     L
Sbjct: 314  YAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFL 373

Query: 1134 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1193
              +LL+   LL L      L     LPL  L+ +  ++  LLL   L    L   L+  +
Sbjct: 374  IAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLYALYASGLPPLLLGVI 433

Query: 1194 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1225
             +   + + LL  L    LL  +L+      L
Sbjct: 434  LIAGGIIIYLLVYLGLGRLLSAILIAEAKAGL 465

Length = 466

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 46.3 bits (110), Expect = 1e-04
 Identities = 90/452 (19%), Positives = 149/452 (32%), Gaps = 16/452 (3%)

Query: 822  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 881
            L LF  L    +   +   +F L      L    +  +L+  +++LFL L    L     
Sbjct: 14   LGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIP 73

Query: 882  LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 941
                   +    L   L FL   L+LL ++  L    +     L +L     +L +  LL
Sbjct: 74   SAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLL 133

Query: 942  FLFLLLLFLLLFLFLLLF--LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 999
             + + L  + L   L L        +   + +L  + LL+  +L           LF   
Sbjct: 134  IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPF 193

Query: 1000 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI-----------LPLFLLLFLFLLLLFLLL 1048
                  F  +L   LL F     F  +  L              + L L + L+L  L  
Sbjct: 194  NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGA 253

Query: 1049 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1108
             + + +              L L  L         ++  L LL L   L   +     +L
Sbjct: 254  LVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313

Query: 1109 FLLL---FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1165
            + +     L      +      P+  L+   ++ L LLL   L        + L     L
Sbjct: 314  YAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFL 373

Query: 1166 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1225
              +LL+   LL L      L     LPL  L+ +  ++  LLL   L    L   L+  +
Sbjct: 374  IAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLYALYASGLPPLLLGVI 433

Query: 1226 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1257
             +   + + LL  L    LL  +L+      L
Sbjct: 434  LIAGGIIIYLLVYLGLGRLLSAILIAEAKAGL 465

Length = 466

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 46.3 bits (110), Expect = 1e-04
 Identities = 90/452 (19%), Positives = 149/452 (32%), Gaps = 16/452 (3%)

Query: 854  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 913
            L LF  L    +   +   +F L      L    +  +L+  +++LFL L    L     
Sbjct: 14   LGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIP 73

Query: 914  LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 973
                   +    L   L FL   L+LL ++  L    +     L +L     +L +  LL
Sbjct: 74   SAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLL 133

Query: 974  FLFLLLLFLLLFLFLLLF--LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1031
             + + L  + L   L L        +   + +L  + LL+  +L           LF   
Sbjct: 134  IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPF 193

Query: 1032 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI-----------LPLFLLLFLFLLLLFLLL 1080
                  F  +L   LL F     F  +  L              + L L + L+L  L  
Sbjct: 194  NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGA 253

Query: 1081 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1140
             + + +              L L  L         ++  L LL L   L   +     +L
Sbjct: 254  LVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313

Query: 1141 FLLL---FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1197
            + +     L      +      P+  L+   ++ L LLL   L        + L     L
Sbjct: 314  YAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFL 373

Query: 1198 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1257
              +LL+   LL L      L     LPL  L+ +  ++  LLL   L    L   L+  +
Sbjct: 374  IAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLYALYASGLPPLLLGVI 433

Query: 1258 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1289
             +   + + LL  L    LL  +L+      L
Sbjct: 434  LIAGGIIIYLLVYLGLGRLLSAILIAEAKAGL 465

Length = 466

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 46.3 bits (110), Expect = 1e-04
 Identities = 90/452 (19%), Positives = 149/452 (32%), Gaps = 16/452 (3%)

Query: 886  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 945
            L LF  L    +   +   +F L      L    +  +L+  +++LFL L    L     
Sbjct: 14   LGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIP 73

Query: 946  LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1005
                   +    L   L FL   L+LL ++  L    +     L +L     +L +  LL
Sbjct: 74   SAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLL 133

Query: 1006 FLFLLLLFLLLFLFLLLF--LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1063
             + + L  + L   L L        +   + +L  + LL+  +L           LF   
Sbjct: 134  IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPF 193

Query: 1064 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI-----------LPLFLLLFLFLLLLFLLL 1112
                  F  +L   LL F     F  +  L              + L L + L+L  L  
Sbjct: 194  NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGA 253

Query: 1113 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1172
             + + +              L L  L         ++  L LL L   L   +     +L
Sbjct: 254  LVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313

Query: 1173 FLLL---FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1229
            + +     L      +      P+  L+   ++ L LLL   L        + L     L
Sbjct: 314  YAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFL 373

Query: 1230 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1289
              +LL+   LL L      L     LPL  L+ +  ++  LLL   L    L   L+  +
Sbjct: 374  IAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLYALYASGLPPLLLGVI 433

Query: 1290 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1321
             +   + + LL  L    LL  +L+      L
Sbjct: 434  LIAGGIIIYLLVYLGLGRLLSAILIAEAKAGL 465

Length = 466

>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]

 Score = 45.5 bits (108), Expect = 2e-04
 Identities = 37/162 (22%), Positives = 56/162 (34%), Gaps = 40/162 (24%)

Query: 773 SDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 832
             ++S LL + FLLLL    FL + L   L       FLL  +F  LL LLL  F  L  
Sbjct: 12  KLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLLLLSFPRLLK 71

Query: 833 LLLFLIL--------------------------------------PLFLLLFLFLLLLFL 854
            L  ++                                         FLL  + + LL  
Sbjct: 72  PLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLWLVLVGLLPA 131

Query: 855 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 896
           LL + +++    ++  L       + +LL  L++  F   F 
Sbjct: 132 LLIVLVIIRYYRVW--LRRLWARLVSILLSLLVILAFAAPFY 171

Length = 555

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 45.5 bits (108), Expect = 2e-04
 Identities = 102/362 (28%), Positives = 141/362 (38%), Gaps = 2/362 (0%)

Query: 987  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1046
            +LLL LL + L+L L L+L L LLL+  LL     +  LLL ++    LLL L  +L  L
Sbjct: 80   YLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALLLRILSLALLLLPLSSVLRGL 139

Query: 1047 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1106
                     L L  +     L     LL   L L ++ L+   ++ L++ L LL      
Sbjct: 140  FQGFGRFGPLALSIVSSIFLLAAVFALLFAALGLAVWALVLGAVVSLLVLLILLGKKKRG 199

Query: 1107 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1166
            L   +L   L L   LL   LPL L   L  L   +   L  L        I      L 
Sbjct: 200  LKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLV 259

Query: 1167 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1226
              LL++   L   L   L   +       L  L    L LLL + +   L LL L  P+ 
Sbjct: 260  SLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPII 319

Query: 1227 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF--LLLLFLLLFLFLLLFLLLLF 1284
             LLF         +   L L  L L L+     LL       LL L+  +  LL L+L  
Sbjct: 320  TLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNL 379

Query: 1285 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSS 1344
            L++P F L+   +    ++    LL ++L L L+   F    L  L     LLL  L   
Sbjct: 380  LLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKFSYFLLLKLAALALLLLAILGLL 439

Query: 1345 FS 1346
              
Sbjct: 440  EL 441

Length = 480

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 45.1 bits (108), Expect = 2e-04
 Identities = 58/190 (30%), Positives = 78/190 (41%), Gaps = 14/190 (7%)

Query: 1179 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1238
             L    +LLFLI   FL    +L+   L L  FL + L  L          F   LL F 
Sbjct: 1    MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFG 60

Query: 1239 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1298
            L+ L   + +L++     ++       L  FL L LFLL+FLLL F  + L L    F  
Sbjct: 61   LILLSFWICMLMILSSESVYKKNNYSNL--FLFLILFLLIFLLLTFSSMNLLLFYIFFES 118

Query: 1299 LLFLLLFLFLL-----------LFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSS 1347
             L   LFL L            ++LL   L   L LL+ +F L      L  FLL +F  
Sbjct: 119  SLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLL-NFFG 177

Query: 1348 SSSSSFSYSS 1357
            S +  +  S 
Sbjct: 178  SLNFLWYLSM 187

Length = 445

>gnl|CDD|224748 COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 67/245 (27%), Positives = 84/245 (34%), Gaps = 5/245 (2%)

Query: 1108 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1167
            LF +L  FL+   LL     P+  L       L  +L   L++ LL   L+L L      
Sbjct: 55   LFFVLSGFLITRSLLRSAAAPVISLAAFLARRLRRILPALLVVLLLTAALLLALLPPGAS 114

Query: 1168 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1227
              L   L    +L   LL L +        F    LL  LL L+ L      +L+ PL L
Sbjct: 115  AALWADLAALFYLSNLLLTLAVGAY-----FAASGLLSPLLHLWSLSVEEQFYLLFPLLL 169

Query: 1228 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1287
            LL   +     LL L L L    L L L  F             L+ FLL  L  L+   
Sbjct: 170  LLLRRVRFALALLLLLLALASFFLLLALGPFATGAALYYGTATRLWEFLLGALAALWRPK 229

Query: 1288 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSS 1347
                   L   L  L L L LL   L+          L L   L    L+L        S
Sbjct: 230  RRPWPALLAAALALLGLALLLLAVALIPGSSPFFPGDLLLVPSLGAALLVLAVAALVGGS 289

Query: 1348 SSSSS 1352
               SS
Sbjct: 290  RLLSS 294

Length = 386

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 107/350 (30%), Positives = 124/350 (35%), Gaps = 7/350 (2%)

Query: 809  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 868
            L L L  FL  L   L    L  L     +      L +    L   L   L  +L   F
Sbjct: 2    LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF 61

Query: 869  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 928
                + LL  L   L  LLL     L+LLL+   L       L+     L+   F     
Sbjct: 62   GRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKER 121

Query: 929  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 988
                 +      L   L  L   L    L +  L  ++  L LLL L LL L  LL L  
Sbjct: 122  GRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLA 181

Query: 989  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL------ 1042
            L F LL F    L   L L+L  +  L      L L L  L   L  LL   L       
Sbjct: 182  LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR 241

Query: 1043 -LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1101
             LL L+  L   L LLLL L   L LLL   LLL F L F F  L  L   L  P     
Sbjct: 242  RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGT 301

Query: 1102 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1151
               L   F  L   L   L  L L    +  +FL L  L LL  L LLL 
Sbjct: 302  ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 107/350 (30%), Positives = 124/350 (35%), Gaps = 7/350 (2%)

Query: 841  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 900
            L L L  FL  L   L    L  L     +      L +    L   L   L  +L   F
Sbjct: 2    LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF 61

Query: 901  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 960
                + LL  L   L  LLL     L+LLL+   L       L+     L+   F     
Sbjct: 62   GRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKER 121

Query: 961  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1020
                 +      L   L  L   L    L +  L  ++  L LLL L LL L  LL L  
Sbjct: 122  GRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLA 181

Query: 1021 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL------ 1074
            L F LL F    L   L L+L  +  L      L L L  L   L  LL   L       
Sbjct: 182  LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR 241

Query: 1075 -LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1133
             LL L+  L   L LLLL L   L LLL   LLL F L F F  L  L   L  P     
Sbjct: 242  RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGT 301

Query: 1134 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1183
               L   F  L   L   L  L L    +  +FL L  L LL  L LLL 
Sbjct: 302  ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 107/350 (30%), Positives = 124/350 (35%), Gaps = 7/350 (2%)

Query: 873  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 932
            L L L  FL  L   L    L  L     +      L +    L   L   L  +L   F
Sbjct: 2    LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF 61

Query: 933  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 992
                + LL  L   L  LLL     L+LLL+   L       L+     L+   F     
Sbjct: 62   GRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKER 121

Query: 993  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1052
                 +      L   L  L   L    L +  L  ++  L LLL L LL L  LL L  
Sbjct: 122  GRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLA 181

Query: 1053 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL------ 1106
            L F LL F    L   L L+L  +  L      L L L  L   L  LL   L       
Sbjct: 182  LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR 241

Query: 1107 -LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1165
             LL L+  L   L LLLL L   L LLL   LLL F L F F  L  L   L  P     
Sbjct: 242  RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGT 301

Query: 1166 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1215
               L   F  L   L   L  L L    +  +FL L  L LL  L LLL 
Sbjct: 302  ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional

 Score = 44.5 bits (106), Expect = 2e-04
 Identities = 78/278 (28%), Positives = 115/278 (41%), Gaps = 7/278 (2%)

Query: 1066 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1125
              L  L  + L + ++  + L + LLF+ L   +  +  L   F+L     LLFLL  F 
Sbjct: 1    LFLSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNYFVLQESLGLLFLLFSFG 60

Query: 1126 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1185
                 +L+    +  F      +   L    L+  L      FLL+L L  F     FLL
Sbjct: 61   YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL-LQFFSKNFFFLL 119

Query: 1186 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1245
            L  L++  F +  L      L+L        L+L      F + FLF        +  L+
Sbjct: 120  LFGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFY------YFLLM 173

Query: 1246 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1305
            LFL+  F  +     +    LL+F+ L   +  F+ +  L   L +L F  L LLFL+  
Sbjct: 174  LFLIPKFNNVNKLNFVSWETLLVFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFL 233

Query: 1306 LFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLS 1343
              L L   L+ L   LFL+LF +    F F L L LLS
Sbjct: 234  SVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLS 271

Length = 273

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.3 bits (108), Expect = 2e-04
 Identities = 45/116 (38%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 1226 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1285
             L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL    
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1286 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFL 1341
             + L   L +FLLLL L   L    F  L+ L   L+ +L L LLLL+  LL   L
Sbjct: 64   RV-LLAWLLVFLLLLALAFLLKGFDFSRLVLL---LWFVLALVLLLLWRLLLRRLL 115

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 45.3 bits (108), Expect = 2e-04
 Identities = 41/107 (38%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 1237 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1296
             L L L LLL  LL    L      +  LLLL LLLFL L     L        LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1297 LLLLFLLLFLFLLLFLLLLFLILPLF-LLLFLFLLLLFLFLLLLFLL 1342
             +LL  LL   LLL L  L        L+L L+ +L  + LLL  LL
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLL 110

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 778 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 835
            L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4   LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 836 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 895
            ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64  RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 896 LLLLFLIL 903
            L   LI+
Sbjct: 124 NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 810 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 867
            L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4   LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 868 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 927
            ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64  RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 928 LLLLFLIL 935
            L   LI+
Sbjct: 124 NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 842 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 899
            L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4   LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 900 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 959
            ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64  RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 960 LLLLFLIL 967
            L   LI+
Sbjct: 124 NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 874 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 931
            L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4   LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 932 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 991
            ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64  RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 992 LLLLFLIL 999
            L   LI+
Sbjct: 124 NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 906  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 963
             L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 964  FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1023
             ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 1024 LLLLFLIL 1031
             L   LI+
Sbjct: 124  NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 938  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 995
             L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 996  FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1055
             ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 1056 LLLLFLIL 1063
             L   LI+
Sbjct: 124  NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 970  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 1027
             L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1028 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1087
             ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 1088 LLLLFLIL 1095
             L   LI+
Sbjct: 124  NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 1002 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 1059
             L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1060 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1119
             ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 1120 LLLLFLIL 1127
             L   LI+
Sbjct: 124  NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 1034 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 1091
             L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1092 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1151
             ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 1152 LLLLFLIL 1159
             L   LI+
Sbjct: 124  NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 1066 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 1123
             L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1124 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1183
             ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 1184 LLLLFLIL 1191
             L   LI+
Sbjct: 124  NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 1098 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 1155
             L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1156 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1215
             ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 1216 LLLLFLIL 1223
             L   LI+
Sbjct: 124  NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 1130 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 1187
             L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1188 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1247
             ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 1248 LLLLFLIL 1255
             L   LI+
Sbjct: 124  NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 1162 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 1219
             L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1220 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1279
             ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 1280 LLLLFLIL 1287
             L   LI+
Sbjct: 124  NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 49/128 (38%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 1194 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL--LL 1251
             L L L LLL FLL    LL       L+L L LLLFL L     L   +    LL  L 
Sbjct: 4    LLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRSLLEELA 63

Query: 1252 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1311
             ++L   L+  L L L FLL        +LLL+ +L L LLL   LLL  LL  L     
Sbjct: 64   RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLLRRLLRRLRKRGK 123

Query: 1312 LLLLFLIL 1319
             L   LI+
Sbjct: 124  NLRRVLIV 131

Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP) , E. coli WcaJ , Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Length = 445

>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed

 Score = 45.3 bits (108), Expect = 2e-04
 Identities = 57/200 (28%), Positives = 77/200 (38%), Gaps = 14/200 (7%)

Query: 775 AISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 834
           A+  L    F L    LL L  LL+LLL        L+ FL+    F    L  +   + 
Sbjct: 17  ALGTLAFAPFDLWPLALLSLAGLLWLLLGASPKQAALIGFLWGFGYFGSG-LSWIYVSIH 75

Query: 835 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 894
            F  +P +L   L +LLL   L L+  LF  L   + P   L     L    +L  +L  
Sbjct: 76  TFGGMPAWLAPLL-VLLLAAYLALYPALFAALWRRLWPKSGLRRALALPALWVLTEWLRG 134

Query: 895 FLLLLF--------LILPLFLL----LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 942
           +LL  F         I    L     +F    L FL++ +  LL L L+     L LL  
Sbjct: 135 WLLTGFPWLALGYSQIPDGPLAQLAPIFGVYGLSFLVVLVNALLALALIKRRWRLALLAL 194

Query: 943 LFLLLLFLLLFLFLLLFLLL 962
           L LLL  L   L  L +   
Sbjct: 195 LLLLLAALGYGLRRLQWTTP 214

Length = 505

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 45.5 bits (108), Expect = 2e-04
 Identities = 92/450 (20%), Positives = 154/450 (34%), Gaps = 17/450 (3%)

Query: 918  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 977
            L LF  L    +   +   +F L      L    +  +L+  +++LFL L    L     
Sbjct: 14   LGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIP 73

Query: 978  LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1037
                   +    L   L FL   L+LL ++  L    +     L +L     +L +  LL
Sbjct: 74   SAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLL 133

Query: 1038 FLFLLLLFLLLFLFLLLF--LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1095
             + + L  + L   L L        +   + +L  + LL+  +L           LF   
Sbjct: 134  IILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPF 193

Query: 1096 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI-----------LPLFLLLFLFLLLLFLLL 1144
                  F  +L   LL F     F  +  L              + L L + L+L  L  
Sbjct: 194  NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGA 253

Query: 1145 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1204
             + + +              L L  L         ++  L LL L   L   +     +L
Sbjct: 254  LVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVL 313

Query: 1205 FLLL---FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1261
            + +     L      +      P+  L+   ++ L LLL   L        + L     L
Sbjct: 314  YAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFL 373

Query: 1262 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1321
              +LL+   LL L      L     LPL  L    L ++ +LL L+ L    L  L+L +
Sbjct: 374  IAYLLVALALLVLRRKKPDLKRPFRLPLAPL-IPILGIVAVLLLLYALYASGLPPLLLGV 432

Query: 1322 FLLLFLFLLLLFLFLLLLFLLSSFSSSSSS 1351
             L+    ++ L ++L L  LLS+   + + 
Sbjct: 433  ILIAGGIIIYLLVYLGLGRLLSAILIAEAK 462

Length = 466

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 58/167 (34%), Positives = 72/167 (43%), Gaps = 9/167 (5%)

Query: 790 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 849
           L L L L L LL L L LPL++      LLL+ +L     + L   +L+L L L     L
Sbjct: 8   LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 850 LLLFLLLFLF-LLLFLLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 900
            L +  L      + LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68  ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 901 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 947
           L+L L LLL   + L          L L    L+  L L L LFLL 
Sbjct: 128 LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLF 174

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAE 223
           D++I+G   AG   A RL+    LKV LIE  G T  +     +   L L   +   LA 
Sbjct: 1   DVVIIGGGPAGLAAAIRLAR-LGLKVALIEREGGTCYNR--GCLPKKLLLEVAEGLELAI 57

Query: 224 PSQFAGLGVRNARIKITAGK 243
                    +   +++  G 
Sbjct: 58  GLALPEEVYKEFGVEVLLGT 77

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 784 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 843
            LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4   LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 844 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 902
           LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64  LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 816 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 875
            LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4   LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 876 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 934
           LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64  LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 848 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 907
            LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4   LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 908 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 966
           LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64  LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 880 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 939
            LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4   LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 940 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 998
           LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64  LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 912  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 971
             LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 972  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1030
            LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64   LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 944  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1003
             LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 1004 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1062
            LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64   LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 976  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1035
             LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 1036 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1094
            LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64   LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 1008 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1067
             LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 1068 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1126
            LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64   LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 1040 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1099
             LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 1100 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1158
            LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64   LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 1072 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1131
             LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 1132 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1190
            LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64   LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 1104 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1163
             LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 1164 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1222
            LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64   LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 1136 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1195
             LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 1196 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1254
            LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64   LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 1168 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1227
             LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 1228 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1286
            LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64   LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 1200 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1259
             LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 1260 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1318
            LL + L      L L LL FLL         L L L+ LL   LL L  L+  LLL  +
Sbjct: 64   LLRILLAWTLTFLILALLAFLLKYGTEFSR-LWLLLWFLLALALLLLGRLILRLLLRRL 121

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 75/280 (26%), Positives = 114/280 (40%), Gaps = 7/280 (2%)

Query: 778  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 837
              L  L  + L + ++  + L + LLF+ L   +  +  L   F+L     LLFLL  F 
Sbjct: 1    LFLSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNYFVLQESLGLLFLLFSFG 60

Query: 838  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 897
                 +L+    +  F      +   L    L+  L      FLL+L L  F     FLL
Sbjct: 61   YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL-LQFFSKNFFFLL 119

Query: 898  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 957
            L  L++  F +  L      L+L        L+L      F + FLF        +  L+
Sbjct: 120  LFGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFY------YFLLM 173

Query: 958  LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1017
            LFL+  F  +     +    LL+F+ L   +  F+ +  L   L +L F  L LLFL+  
Sbjct: 174  LFLIPKFNNVNKLNFVSWETLLVFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFL 233

Query: 1018 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1057
              L L   L+ L   LFL+LF +    F      +LL L+
Sbjct: 234  SVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273

Length = 273

>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 75/280 (26%), Positives = 114/280 (40%), Gaps = 7/280 (2%)

Query: 810  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 869
              L  L  + L + ++  + L + LLF+ L   +  +  L   F+L     LLFLL  F 
Sbjct: 1    LFLSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNYFVLQESLGLLFLLFSFG 60

Query: 870  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 929
                 +L+    +  F      +   L    L+  L      FLL+L L  F     FLL
Sbjct: 61   YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL-LQFFSKNFFFLL 119

Query: 930  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 989
            L  L++  F +  L      L+L        L+L      F + FLF        +  L+
Sbjct: 120  LFGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFY------YFLLM 173

Query: 990  LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1049
            LFL+  F  +     +    LL+F+ L   +  F+ +  L   L +L F  L LLFL+  
Sbjct: 174  LFLIPKFNNVNKLNFVSWETLLVFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFL 233

Query: 1050 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1089
              L L   L+ L   LFL+LF +    F      +LL L+
Sbjct: 234  SVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273

Length = 273

>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 75/280 (26%), Positives = 114/280 (40%), Gaps = 7/280 (2%)

Query: 842  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 901
              L  L  + L + ++  + L + LLF+ L   +  +  L   F+L     LLFLL  F 
Sbjct: 1    LFLSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNYFVLQESLGLLFLLFSFG 60

Query: 902  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 961
                 +L+    +  F      +   L    L+  L      FLL+L L  F     FLL
Sbjct: 61   YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL-LQFFSKNFFFLL 119

Query: 962  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1021
            L  L++  F +  L      L+L        L+L      F + FLF        +  L+
Sbjct: 120  LFGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFY------YFLLM 173

Query: 1022 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1081
            LFL+  F  +     +    LL+F+ L   +  F+ +  L   L +L F  L LLFL+  
Sbjct: 174  LFLIPKFNNVNKLNFVSWETLLVFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFL 233

Query: 1082 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1121
              L L   L+ L   LFL+LF +    F      +LL L+
Sbjct: 234  SVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273

Length = 273

>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 75/280 (26%), Positives = 114/280 (40%), Gaps = 7/280 (2%)

Query: 874  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 933
              L  L  + L + ++  + L + LLF+ L   +  +  L   F+L     LLFLL  F 
Sbjct: 1    LFLSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNYFVLQESLGLLFLLFSFG 60

Query: 934  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 993
                 +L+    +  F      +   L    L+  L      FLL+L L  F     FLL
Sbjct: 61   YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL-LQFFSKNFFFLL 119

Query: 994  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1053
            L  L++  F +  L      L+L        L+L      F + FLF        +  L+
Sbjct: 120  LFGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFY------YFLLM 173

Query: 1054 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1113
            LFL+  F  +     +    LL+F+ L   +  F+ +  L   L +L F  L LLFL+  
Sbjct: 174  LFLIPKFNNVNKLNFVSWETLLVFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFL 233

Query: 1114 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1153
              L L   L+ L   LFL+LF +    F      +LL L+
Sbjct: 234  SVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273

Length = 273

>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 75/280 (26%), Positives = 114/280 (40%), Gaps = 7/280 (2%)

Query: 906  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 965
              L  L  + L + ++  + L + LLF+ L   +  +  L   F+L     LLFLL  F 
Sbjct: 1    LFLSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNYFVLQESLGLLFLLFSFG 60

Query: 966  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1025
                 +L+    +  F      +   L    L+  L      FLL+L L  F     FLL
Sbjct: 61   YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL-LQFFSKNFFFLL 119

Query: 1026 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1085
            L  L++  F +  L      L+L        L+L      F + FLF        +  L+
Sbjct: 120  LFGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFY------YFLLM 173

Query: 1086 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1145
            LFL+  F  +     +    LL+F+ L   +  F+ +  L   L +L F  L LLFL+  
Sbjct: 174  LFLIPKFNNVNKLNFVSWETLLVFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFL 233

Query: 1146 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1185
              L L   L+ L   LFL+LF +    F      +LL L+
Sbjct: 234  SVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273

Length = 273

>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 75/280 (26%), Positives = 114/280 (40%), Gaps = 7/280 (2%)

Query: 938  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 997
              L  L  + L + ++  + L + LLF+ L   +  +  L   F+L     LLFLL  F 
Sbjct: 1    LFLSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNYFVLQESLGLLFLLFSFG 60

Query: 998  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1057
                 +L+    +  F      +   L    L+  L      FLL+L L  F     FLL
Sbjct: 61   YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL-LQFFSKNFFFLL 119

Query: 1058 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1117
            L  L++  F +  L      L+L        L+L      F + FLF        +  L+
Sbjct: 120  LFGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFY------YFLLM 173

Query: 1118 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1177
            LFL+  F  +     +    LL+F+ L   +  F+ +  L   L +L F  L LLFL+  
Sbjct: 174  LFLIPKFNNVNKLNFVSWETLLVFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFL 233

Query: 1178 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1217
              L L   L+ L   LFL+LF +    F      +LL L+
Sbjct: 234  SVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273

Length = 273

>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 75/280 (26%), Positives = 114/280 (40%), Gaps = 7/280 (2%)

Query: 970  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1029
              L  L  + L + ++  + L + LLF+ L   +  +  L   F+L     LLFLL  F 
Sbjct: 1    LFLSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNYFVLQESLGLLFLLFSFG 60

Query: 1030 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1089
                 +L+    +  F      +   L    L+  L      FLL+L L  F     FLL
Sbjct: 61   YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL-LQFFSKNFFFLL 119

Query: 1090 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1149
            L  L++  F +  L      L+L        L+L      F + FLF        +  L+
Sbjct: 120  LFGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFY------YFLLM 173

Query: 1150 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1209
            LFL+  F  +     +    LL+F+ L   +  F+ +  L   L +L F  L LLFL+  
Sbjct: 174  LFLIPKFNNVNKLNFVSWETLLVFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFL 233

Query: 1210 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1249
              L L   L+ L   LFL+LF +    F      +LL L+
Sbjct: 234  SVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273

Length = 273

>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 75/280 (26%), Positives = 114/280 (40%), Gaps = 7/280 (2%)

Query: 1002 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1061
              L  L  + L + ++  + L + LLF+ L   +  +  L   F+L     LLFLL  F 
Sbjct: 1    LFLSLLNFMSLNIFVWWSVFLLMTLLFVFLNKGMGSYSSLFNYFVLQESLGLLFLLFSFG 60

Query: 1062 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1121
                 +L+    +  F      +   L    L+  L      FLL+L L  F     FLL
Sbjct: 61   YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL-LQFFSKNFFFLL 119

Query: 1122 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1181
            L  L++  F +  L      L+L        L+L      F + FLF        +  L+
Sbjct: 120  LFGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFY------YFLLM 173

Query: 1182 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1241
            LFL+  F  +     +    LL+F+ L   +  F+ +  L   L +L F  L LLFL+  
Sbjct: 174  LFLIPKFNNVNKLNFVSWETLLVFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFL 233

Query: 1242 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1281
              L L   L+ L   LFL+LF +    F      +LL L+
Sbjct: 234  SVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273

Length = 273

>gnl|CDD|227317 COG4984, COG4984, Predicted membrane protein [Function unknown]

 Score = 44.9 bits (106), Expect = 3e-04
 Identities = 113/530 (21%), Positives = 192/530 (36%), Gaps = 16/530 (3%)

Query: 813  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 872
            + L   LL     + L L + LL      F L    L  +  +     + F L+ +    
Sbjct: 108  ICLIPFLLLFPGNVALALLVTLLVTASVAFSLAISLLGDIVHMTIFLNMGFCLVCYEYFQ 167

Query: 873  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 932
              L   +    +  ++ LF+L+F     LI+      ++ LL       L         F
Sbjct: 168  ERLKDQVNNWFILPMIALFILVFAFGWALIVTYNNSGYVVLLSWLASAGLVYYYKEYRRF 227

Query: 933  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 992
              L L LL F   L++     + L      L  I  + LL FL  +     L +    + 
Sbjct: 228  DFLNLILLFFY--LVVSGCAKILLSSGEDFLSDIFLVTLLAFLGTIGAIAGLLIKWFKWH 285

Query: 993  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1052
                  +   ++  LF+LL+  L  L L+       L     ++  + L L+  L+  F 
Sbjct: 286  NPTASRVTWLIVPLLFILLIIFLTALLLITLFFSFGLEDGQDIIYPIILFLIIALVMHFN 345

Query: 1053 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL-LFLFLLLLFLL 1111
                   F I  +  +   F+L     LF       L L  IL +F   L       F +
Sbjct: 346  QFEKADWFDIAIVMFIAGGFILYFIFRLFDGENDSYLALMAILSIFDYQLRSSNWFRFPI 405

Query: 1112 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1171
              LF++ FL+ +   L  + L +   L  F L    +   LLL F         +   L+
Sbjct: 406  AALFIIAFLVYIGFFLLRWYLYYEEHLGQFYLQIWIIAGGLLLYFFFSLSLERPYTIKLI 465

Query: 1172 LFLLLFLFLLLFLLLLFLILPLFL------------LLFLFLLLLFLLLFLFLLLFLLLL 1219
            L       +LL + L       F              ++  ++  +    L     +  L
Sbjct: 466  LIAWANELVLLAMNLDIFNRWTFYDTAGQTPEMSDLNIWFHVITGYYFTALTDTWLIKSL 525

Query: 1220 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1279
             L++ +  ++F  ++     L LFLL  + L  L L L  +    L L+ LLL  +L + 
Sbjct: 526  HLLISITFIIFFVIISRRFELTLFLLALIALTLLALCLGFIAVETLALILLLLLAYLSVS 585

Query: 1280 LLLLFLILPLFLLLF-LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1328
             +L  L L   ++    +  LL +LL    LL  + + L++  F+LL   
Sbjct: 586  WVLFVLALLGVIMNLSYYYYLLSILLHKSFLLMGVGILLLVVTFVLLRYN 635

Length = 644

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 45.0 bits (107), Expect = 3e-04
 Identities = 60/280 (21%), Positives = 110/280 (39%), Gaps = 29/280 (10%)

Query: 813  LFLFLLLLFLLLFLFLLLFLLLLFLIL--PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 870
            + +  +LLF + F F +  + L    +   L +LL + ++ L L++  F          +
Sbjct: 1    INIIFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFL 60

Query: 871  LPLFLLLFLFLLLLFLLLFLFLLLFLLLL-----------------------FLILPLFL 907
            +    +  + + +L L+L L L+  L  L                       F   P  L
Sbjct: 61   MRHKGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNL 120

Query: 908  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 967
             L LF+  L+ L      LF  ++ ++L     L L+  +  +       + L L  L+L
Sbjct: 121  FLLLFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLL 180

Query: 968  PLFLLLFLFLLLLFLLLFLFLLLFLLLLFL----ILPLFLLLFLFLLLLFLLLFLFLLLF 1023
             L   + +     ++L F+ L LFL  +      +     L  L  +LL +  F+     
Sbjct: 181  ALSPYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAI 240

Query: 1024 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1063
            + ++ + + LFL L L      +L F  ++L  LL F I 
Sbjct: 241  IFVIAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSFGIT 280

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 45.0 bits (107), Expect = 3e-04
 Identities = 60/280 (21%), Positives = 110/280 (39%), Gaps = 29/280 (10%)

Query: 1037 LFLFLLLLFLLLFLFLLLFLLLLFLIL--PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1094
            + +  +LLF + F F +  + L    +   L +LL + ++ L L++  F          +
Sbjct: 1    INIIFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFL 60

Query: 1095 LPLFLLLFLFLLLLFLLLFLFLLLFLLLL-----------------------FLILPLFL 1131
            +    +  + + +L L+L L L+  L  L                       F   P  L
Sbjct: 61   MRHKGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNL 120

Query: 1132 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1191
             L LF+  L+ L      LF  ++ ++L     L L+  +  +       + L L  L+L
Sbjct: 121  FLLLFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLL 180

Query: 1192 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFL----ILPLFLLLFLFLLLLFLLLFLFLLLF 1247
             L   + +     ++L F+ L LFL  +      +     L  L  +LL +  F+     
Sbjct: 181  ALSPYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAI 240

Query: 1248 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1287
            + ++ + + LFL L L      +L F  ++L  LL F I 
Sbjct: 241  IFVIAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSFGIT 280

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|226122 COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 62/249 (24%), Positives = 97/249 (38%), Gaps = 6/249 (2%)

Query: 1061 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1120
            LI+P      ++ +L FLL      L L  +     L+ L+ LF   L LL    L+  L
Sbjct: 74   LIVPYIFFFLIYSILYFLLRKFNSELTLNFILPGWELWFLVILFFWFLPLLFITKLIYNL 133

Query: 1121 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1180
            + ++L + + L++ + +   F+ L L          +  P FLL  LF  L F    L  
Sbjct: 134  IAVWLAVSVSLIILILVGFFFIPLSL---GSFSRTLVFFPFFLLGTLFAKLHFWFGGLLR 190

Query: 1181 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1240
                L + +   L  ++FL + L F   +L   +       I    LL  L L L    L
Sbjct: 191  TYKGLRVNIKSFLAAVIFLAVGLAFNYSWLLGSMPYSSFGNIFVGGLLRALVLGLALNAL 250

Query: 1241 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1300
              F      L  L+  L        LL   +  +  L F +L      L    FL +LL+
Sbjct: 251  VRFAAKIPQLRKLVTKLGKNTLYIYLLHGFVFKVLRLQFGILNLSTSYLA---FLPILLI 307

Query: 1301 FLLLFLFLL 1309
              L+ + +L
Sbjct: 308  VSLIIIAVL 316

Length = 343

>gnl|CDD|217721 pfam03772, Competence, Competence protein

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 80/235 (34%), Positives = 100/235 (42%)

Query: 792  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 851
            L   L+L LL   L+      L   L LLFLLL+  L  F   +   L + LL+ L LLL
Sbjct: 35   LVAGLVLLLLRRLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLLLVLLALLL 94

Query: 852  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 911
               +  L  L    LL L++    LL     L FL +   LLL   L   +  L   L  
Sbjct: 95   GRRISPLDSLALAALLLLLIDPLALLSAGFQLSFLAVAGLLLLAPRLQKRLSRLSPRLLA 154

Query: 912  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 971
             LLL+ L   L  L  LL  F    L  LL   L +  +   +  L  L LL  + P   
Sbjct: 155  LLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPLA 214

Query: 972  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1026
             L L+L    L L L LL +L  L           L+LLLL+ LL L LLL LL 
Sbjct: 215  ALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLLLLLLLLLLLR 269

Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site. Length = 270

>gnl|CDD|217721 pfam03772, Competence, Competence protein

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 80/235 (34%), Positives = 100/235 (42%)

Query: 824  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 883
            L   L+L LL   L+      L   L LLFLLL+  L  F   +   L + LL+ L LLL
Sbjct: 35   LVAGLVLLLLRRLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLLLVLLALLL 94

Query: 884  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 943
               +  L  L    LL L++    LL     L FL +   LLL   L   +  L   L  
Sbjct: 95   GRRISPLDSLALAALLLLLIDPLALLSAGFQLSFLAVAGLLLLAPRLQKRLSRLSPRLLA 154

Query: 944  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1003
             LLL+ L   L  L  LL  F    L  LL   L +  +   +  L  L LL  + P   
Sbjct: 155  LLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPLA 214

Query: 1004 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1058
             L L+L    L L L LL +L  L           L+LLLL+ LL L LLL LL 
Sbjct: 215  ALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLLLLLLLLLLLR 269

Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site. Length = 270

>gnl|CDD|217721 pfam03772, Competence, Competence protein

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 80/235 (34%), Positives = 100/235 (42%)

Query: 856  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 915
            L   L+L LL   L+      L   L LLFLLL+  L  F   +   L + LL+ L LLL
Sbjct: 35   LVAGLVLLLLRRLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLLLVLLALLL 94

Query: 916  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 975
               +  L  L    LL L++    LL     L FL +   LLL   L   +  L   L  
Sbjct: 95   GRRISPLDSLALAALLLLLIDPLALLSAGFQLSFLAVAGLLLLAPRLQKRLSRLSPRLLA 154

Query: 976  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1035
             LLL+ L   L  L  LL  F    L  LL   L +  +   +  L  L LL  + P   
Sbjct: 155  LLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPLA 214

Query: 1036 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1090
             L L+L    L L L LL +L  L           L+LLLL+ LL L LLL LL 
Sbjct: 215  ALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLLLLLLLLLLLR 269

Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site. Length = 270

>gnl|CDD|217721 pfam03772, Competence, Competence protein

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 80/235 (34%), Positives = 100/235 (42%)

Query: 888  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 947
            L   L+L LL   L+      L   L LLFLLL+  L  F   +   L + LL+ L LLL
Sbjct: 35   LVAGLVLLLLRRLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLLLVLLALLL 94

Query: 948  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1007
               +  L  L    LL L++    LL     L FL +   LLL   L   +  L   L  
Sbjct: 95   GRRISPLDSLALAALLLLLIDPLALLSAGFQLSFLAVAGLLLLAPRLQKRLSRLSPRLLA 154

Query: 1008 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1067
             LLL+ L   L  L  LL  F    L  LL   L +  +   +  L  L LL  + P   
Sbjct: 155  LLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPLA 214

Query: 1068 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1122
             L L+L    L L L LL +L  L           L+LLLL+ LL L LLL LL 
Sbjct: 215  ALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLLLLLLLLLLLR 269

Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site. Length = 270

>gnl|CDD|217721 pfam03772, Competence, Competence protein

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 80/235 (34%), Positives = 100/235 (42%)

Query: 920  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 979
            L   L+L LL   L+      L   L LLFLLL+  L  F   +   L + LL+ L LLL
Sbjct: 35   LVAGLVLLLLRRLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLLLVLLALLL 94

Query: 980  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1039
               +  L  L    LL L++    LL     L FL +   LLL   L   +  L   L  
Sbjct: 95   GRRISPLDSLALAALLLLLIDPLALLSAGFQLSFLAVAGLLLLAPRLQKRLSRLSPRLLA 154

Query: 1040 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1099
             LLL+ L   L  L  LL  F    L  LL   L +  +   +  L  L LL  + P   
Sbjct: 155  LLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPLA 214

Query: 1100 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1154
             L L+L    L L L LL +L  L           L+LLLL+ LL L LLL LL 
Sbjct: 215  ALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLLLLLLLLLLLR 269

Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site. Length = 270

>gnl|CDD|217721 pfam03772, Competence, Competence protein

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 80/235 (34%), Positives = 100/235 (42%)

Query: 952  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1011
            L   L+L LL   L+      L   L LLFLLL+  L  F   +   L + LL+ L LLL
Sbjct: 35   LVAGLVLLLLRRLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLLLVLLALLL 94

Query: 1012 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1071
               +  L  L    LL L++    LL     L FL +   LLL   L   +  L   L  
Sbjct: 95   GRRISPLDSLALAALLLLLIDPLALLSAGFQLSFLAVAGLLLLAPRLQKRLSRLSPRLLA 154

Query: 1072 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1131
             LLL+ L   L  L  LL  F    L  LL   L +  +   +  L  L LL  + P   
Sbjct: 155  LLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPLA 214

Query: 1132 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1186
             L L+L    L L L LL +L  L           L+LLLL+ LL L LLL LL 
Sbjct: 215  ALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLLLLLLLLLLLR 269

Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site. Length = 270

>gnl|CDD|217721 pfam03772, Competence, Competence protein

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 80/235 (34%), Positives = 100/235 (42%)

Query: 984  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1043
            L   L+L LL   L+      L   L LLFLLL+  L  F   +   L + LL+ L LLL
Sbjct: 35   LVAGLVLLLLRRLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLLLVLLALLL 94

Query: 1044 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1103
               +  L  L    LL L++    LL     L FL +   LLL   L   +  L   L  
Sbjct: 95   GRRISPLDSLALAALLLLLIDPLALLSAGFQLSFLAVAGLLLLAPRLQKRLSRLSPRLLA 154

Query: 1104 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1163
             LLL+ L   L  L  LL  F    L  LL   L +  +   +  L  L LL  + P   
Sbjct: 155  LLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPLA 214

Query: 1164 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1218
             L L+L    L L L LL +L  L           L+LLLL+ LL L LLL LL 
Sbjct: 215  ALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLLLLLLLLLLLR 269

Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site. Length = 270

>gnl|CDD|217721 pfam03772, Competence, Competence protein

 Score = 44.1 bits (105), Expect = 3e-04
 Identities = 80/235 (34%), Positives = 100/235 (42%)

Query: 1016 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1075
            L   L+L LL   L+      L   L LLFLLL+  L  F   +   L + LL+ L LLL
Sbjct: 35   LVAGLVLLLLRRLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLLLVLLALLL 94

Query: 1076 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1135
               +  L  L    LL L++    LL     L FL +   LLL   L   +  L   L  
Sbjct: 95   GRRISPLDSLALAALLLLLIDPLALLSAGFQLSFLAVAGLLLLAPRLQKRLSRLSPRLLA 154

Query: 1136 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1195
             LLL+ L   L  L  LL  F    L  LL   L +  +   +  L  L LL  + P   
Sbjct: 155  LLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPLA 214

Query: 1196 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1250
             L L+L    L L L LL +L  L           L+LLLL+ LL L LLL LL 
Sbjct: 215  ALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLLLLLLLLLLLR 269

Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site. Length = 270

>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function unknown]

 Score = 45.0 bits (107), Expect = 3e-04
 Identities = 50/198 (25%), Positives = 68/198 (34%), Gaps = 13/198 (6%)

Query: 774 DAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 833
           D +  LL+   L +L  L  + LL       L   L LL  +  L L     L   L   
Sbjct: 6   DWLVRLLVPQILAILVFLSGVILLFSGATPSLDERLRLLPRIVPLPLIEASHLTASLLGA 65

Query: 834 LLFLILP---LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 890
           LL L+       L       L+ L+L L L L   L   I    L L   LLL     F 
Sbjct: 66  LLLLLARGLRKRLKRAWIAALIVLILGLVLSLAKGLA-WIEAAVLFLIAVLLLAGRRAFY 124

Query: 891 ---FLLLFLLLLFLILPLFLLLF-LFLLLLFLLLFLFLLLFLLLLF---LILPLFL--LL 941
               LL+  +    +    + L     L  F    +     L   F      P FL  LL
Sbjct: 125 RKSLLLVQSISPGWLAAFIVALAAANWLGGFAYADVEYSNDLWWEFPFTGSAPRFLRALL 184

Query: 942 FLFLLLLFLLLFLFLLLF 959
            +F+ L+ L ++  L   
Sbjct: 185 GVFIALIALGIWALLRPR 202

Length = 538

>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 79/247 (31%), Positives = 105/247 (42%)

Query: 806  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 865
            +L  +L   L   LL LL+    +  LLLL L+L L         L FL       L L 
Sbjct: 80   LLIPYLFWSLLYFLLGLLVGGLSVYGLLLLLLLLGLLFGGGPNGHLWFLPALFVFYLLLP 139

Query: 866  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 925
            LL  +L     L L LLL  LLL   L + +LL+ L   +  LL   L    L   L   
Sbjct: 140  LLLRLLRKLKKLLLLLLLALLLLLSLLYILILLVGLPPTVLNLLIGLLPFFLLGALLARY 199

Query: 926  LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 985
               +    +L L ++L    LL  +LL LFL   + L   +   F LL L L +L LLL 
Sbjct: 200  RKRIRSKRLLLLIVILLALALLALILLLLFLFGLVYLAPELYGYFSLLLLLLGVLLLLLL 259

Query: 986  LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1045
              LL  L  L  +L       L + L+   + L L   LLLL  + P+ L L   +L L 
Sbjct: 260  ALLLANLRSLKRLLKYLGKYSLGIYLIHPPILLLLTKLLLLLPPLGPILLFLLALVLTLL 319

Query: 1046 LLLFLFL 1052
            + L L  
Sbjct: 320  VSLLLAR 326

This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long. Length = 326

>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 79/247 (31%), Positives = 105/247 (42%)

Query: 870  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 929
            +L  +L   L   LL LL+    +  LLLL L+L L         L FL       L L 
Sbjct: 80   LLIPYLFWSLLYFLLGLLVGGLSVYGLLLLLLLLGLLFGGGPNGHLWFLPALFVFYLLLP 139

Query: 930  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 989
            LL  +L     L L LLL  LLL   L + +LL+ L   +  LL   L    L   L   
Sbjct: 140  LLLRLLRKLKKLLLLLLLALLLLLSLLYILILLVGLPPTVLNLLIGLLPFFLLGALLARY 199

Query: 990  LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1049
               +    +L L ++L    LL  +LL LFL   + L   +   F LL L L +L LLL 
Sbjct: 200  RKRIRSKRLLLLIVILLALALLALILLLLFLFGLVYLAPELYGYFSLLLLLLGVLLLLLL 259

Query: 1050 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1109
              LL  L  L  +L       L + L+   + L L   LLLL  + P+ L L   +L L 
Sbjct: 260  ALLLANLRSLKRLLKYLGKYSLGIYLIHPPILLLLTKLLLLLPPLGPILLFLLALVLTLL 319

Query: 1110 LLLFLFL 1116
            + L L  
Sbjct: 320  VSLLLAR 326

This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long. Length = 326

>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 79/247 (31%), Positives = 105/247 (42%)

Query: 934  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 993
            +L  +L   L   LL LL+    +  LLLL L+L L         L FL       L L 
Sbjct: 80   LLIPYLFWSLLYFLLGLLVGGLSVYGLLLLLLLLGLLFGGGPNGHLWFLPALFVFYLLLP 139

Query: 994  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1053
            LL  +L     L L LLL  LLL   L + +LL+ L   +  LL   L    L   L   
Sbjct: 140  LLLRLLRKLKKLLLLLLLALLLLLSLLYILILLVGLPPTVLNLLIGLLPFFLLGALLARY 199

Query: 1054 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1113
               +    +L L ++L    LL  +LL LFL   + L   +   F LL L L +L LLL 
Sbjct: 200  RKRIRSKRLLLLIVILLALALLALILLLLFLFGLVYLAPELYGYFSLLLLLLGVLLLLLL 259

Query: 1114 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1173
              LL  L  L  +L       L + L+   + L L   LLLL  + P+ L L   +L L 
Sbjct: 260  ALLLANLRSLKRLLKYLGKYSLGIYLIHPPILLLLTKLLLLLPPLGPILLFLLALVLTLL 319

Query: 1174 LLLFLFL 1180
            + L L  
Sbjct: 320  VSLLLAR 326

This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long. Length = 326

>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 79/247 (31%), Positives = 105/247 (42%)

Query: 998  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1057
            +L  +L   L   LL LL+    +  LLLL L+L L         L FL       L L 
Sbjct: 80   LLIPYLFWSLLYFLLGLLVGGLSVYGLLLLLLLLGLLFGGGPNGHLWFLPALFVFYLLLP 139

Query: 1058 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1117
            LL  +L     L L LLL  LLL   L + +LL+ L   +  LL   L    L   L   
Sbjct: 140  LLLRLLRKLKKLLLLLLLALLLLLSLLYILILLVGLPPTVLNLLIGLLPFFLLGALLARY 199

Query: 1118 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1177
               +    +L L ++L    LL  +LL LFL   + L   +   F LL L L +L LLL 
Sbjct: 200  RKRIRSKRLLLLIVILLALALLALILLLLFLFGLVYLAPELYGYFSLLLLLLGVLLLLLL 259

Query: 1178 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1237
              LL  L  L  +L       L + L+   + L L   LLLL  + P+ L L   +L L 
Sbjct: 260  ALLLANLRSLKRLLKYLGKYSLGIYLIHPPILLLLTKLLLLLPPLGPILLFLLALVLTLL 319

Query: 1238 LLLFLFL 1244
            + L L  
Sbjct: 320  VSLLLAR 326

This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long. Length = 326

>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 79/247 (31%), Positives = 105/247 (42%)

Query: 1062 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1121
            +L  +L   L   LL LL+    +  LLLL L+L L         L FL       L L 
Sbjct: 80   LLIPYLFWSLLYFLLGLLVGGLSVYGLLLLLLLLGLLFGGGPNGHLWFLPALFVFYLLLP 139

Query: 1122 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1181
            LL  +L     L L LLL  LLL   L + +LL+ L   +  LL   L    L   L   
Sbjct: 140  LLLRLLRKLKKLLLLLLLALLLLLSLLYILILLVGLPPTVLNLLIGLLPFFLLGALLARY 199

Query: 1182 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1241
               +    +L L ++L    LL  +LL LFL   + L   +   F LL L L +L LLL 
Sbjct: 200  RKRIRSKRLLLLIVILLALALLALILLLLFLFGLVYLAPELYGYFSLLLLLLGVLLLLLL 259

Query: 1242 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1301
              LL  L  L  +L       L + L+   + L L   LLLL  + P+ L L   +L L 
Sbjct: 260  ALLLANLRSLKRLLKYLGKYSLGIYLIHPPILLLLTKLLLLLPPLGPILLFLLALVLTLL 319

Query: 1302 LLLFLFL 1308
            + L L  
Sbjct: 320  VSLLLAR 326

This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long. Length = 326

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 55/174 (31%), Positives = 71/174 (40%), Gaps = 3/174 (1%)

Query: 797 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 856
           LL  LL +L   L LL  L LLL  LL    LLL LL+  +I  L   L   L LL LLL
Sbjct: 3   LLRRLLKYLKYKLLLLAILLLLLSALLS---LLLPLLIGRIIDALLADLGELLELLLLLL 59

Query: 857 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 916
            L LL  +L          L    +  L   LF  LL   L  F       L+      +
Sbjct: 60  LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDV 119

Query: 917 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 970
             +  L   + +L+   IL L   L L   L + L  + LL+  LL  ++  L 
Sbjct: 120 EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 55/174 (31%), Positives = 71/174 (40%), Gaps = 3/174 (1%)

Query: 829  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 888
            LL  LL +L   L LL  L LLL  LL    LLL LL+  +I  L   L   L LL LLL
Sbjct: 3    LLRRLLKYLKYKLLLLAILLLLLSALLS---LLLPLLIGRIIDALLADLGELLELLLLLL 59

Query: 889  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 948
             L LL  +L          L    +  L   LF  LL   L  F       L+      +
Sbjct: 60   LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDV 119

Query: 949  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1002
              +  L   + +L+   IL L   L L   L + L  + LL+  LL  ++  L 
Sbjct: 120  EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 55/174 (31%), Positives = 71/174 (40%), Gaps = 3/174 (1%)

Query: 861  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 920
            LL  LL +L   L LL  L LLL  LL    LLL LL+  +I  L   L   L LL LLL
Sbjct: 3    LLRRLLKYLKYKLLLLAILLLLLSALLS---LLLPLLIGRIIDALLADLGELLELLLLLL 59

Query: 921  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 980
             L LL  +L          L    +  L   LF  LL   L  F       L+      +
Sbjct: 60   LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDV 119

Query: 981  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1034
              +  L   + +L+   IL L   L L   L + L  + LL+  LL  ++  L 
Sbjct: 120  EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 55/174 (31%), Positives = 71/174 (40%), Gaps = 3/174 (1%)

Query: 893  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 952
            LL  LL +L   L LL  L LLL  LL    LLL LL+  +I  L   L   L LL LLL
Sbjct: 3    LLRRLLKYLKYKLLLLAILLLLLSALLS---LLLPLLIGRIIDALLADLGELLELLLLLL 59

Query: 953  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1012
             L LL  +L          L    +  L   LF  LL   L  F       L+      +
Sbjct: 60   LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDV 119

Query: 1013 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1066
              +  L   + +L+   IL L   L L   L + L  + LL+  LL  ++  L 
Sbjct: 120  EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 55/174 (31%), Positives = 71/174 (40%), Gaps = 3/174 (1%)

Query: 925  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 984
            LL  LL +L   L LL  L LLL  LL    LLL LL+  +I  L   L   L LL LLL
Sbjct: 3    LLRRLLKYLKYKLLLLAILLLLLSALLS---LLLPLLIGRIIDALLADLGELLELLLLLL 59

Query: 985  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1044
             L LL  +L          L    +  L   LF  LL   L  F       L+      +
Sbjct: 60   LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDV 119

Query: 1045 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1098
              +  L   + +L+   IL L   L L   L + L  + LL+  LL  ++  L 
Sbjct: 120  EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 55/174 (31%), Positives = 71/174 (40%), Gaps = 3/174 (1%)

Query: 957  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1016
            LL  LL +L   L LL  L LLL  LL    LLL LL+  +I  L   L   L LL LLL
Sbjct: 3    LLRRLLKYLKYKLLLLAILLLLLSALLS---LLLPLLIGRIIDALLADLGELLELLLLLL 59

Query: 1017 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1076
             L LL  +L          L    +  L   LF  LL   L  F       L+      +
Sbjct: 60   LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDV 119

Query: 1077 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1130
              +  L   + +L+   IL L   L L   L + L  + LL+  LL  ++  L 
Sbjct: 120  EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 55/174 (31%), Positives = 71/174 (40%), Gaps = 3/174 (1%)

Query: 989  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1048
            LL  LL +L   L LL  L LLL  LL    LLL LL+  +I  L   L   L LL LLL
Sbjct: 3    LLRRLLKYLKYKLLLLAILLLLLSALLS---LLLPLLIGRIIDALLADLGELLELLLLLL 59

Query: 1049 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1108
             L LL  +L          L    +  L   LF  LL   L  F       L+      +
Sbjct: 60   LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDV 119

Query: 1109 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1162
              +  L   + +L+   IL L   L L   L + L  + LL+  LL  ++  L 
Sbjct: 120  EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 55/174 (31%), Positives = 71/174 (40%), Gaps = 3/174 (1%)

Query: 1021 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1080
            LL  LL +L   L LL  L LLL  LL    LLL LL+  +I  L   L   L LL LLL
Sbjct: 3    LLRRLLKYLKYKLLLLAILLLLLSALLS---LLLPLLIGRIIDALLADLGELLELLLLLL 59

Query: 1081 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1140
             L LL  +L          L    +  L   LF  LL   L  F       L+      +
Sbjct: 60   LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDV 119

Query: 1141 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1194
              +  L   + +L+   IL L   L L   L + L  + LL+  LL  ++  L 
Sbjct: 120  EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 55/174 (31%), Positives = 71/174 (40%), Gaps = 3/174 (1%)

Query: 1053 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1112
            LL  LL +L   L LL  L LLL  LL    LLL LL+  +I  L   L   L LL LLL
Sbjct: 3    LLRRLLKYLKYKLLLLAILLLLLSALLS---LLLPLLIGRIIDALLADLGELLELLLLLL 59

Query: 1113 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1172
             L LL  +L          L    +  L   LF  LL   L  F       L+      +
Sbjct: 60   LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDV 119

Query: 1173 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1226
              +  L   + +L+   IL L   L L   L + L  + LL+  LL  ++  L 
Sbjct: 120  EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 55/174 (31%), Positives = 71/174 (40%), Gaps = 3/174 (1%)

Query: 1085 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1144
            LL  LL +L   L LL  L LLL  LL    LLL LL+  +I  L   L   L LL LLL
Sbjct: 3    LLRRLLKYLKYKLLLLAILLLLLSALLS---LLLPLLIGRIIDALLADLGELLELLLLLL 59

Query: 1145 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1204
             L LL  +L          L    +  L   LF  LL   L  F       L+      +
Sbjct: 60   LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDV 119

Query: 1205 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1258
              +  L   + +L+   IL L   L L   L + L  + LL+  LL  ++  L 
Sbjct: 120  EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 55/174 (31%), Positives = 71/174 (40%), Gaps = 3/174 (1%)

Query: 1117 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1176
            LL  LL +L   L LL  L LLL  LL    LLL LL+  +I  L   L   L LL LLL
Sbjct: 3    LLRRLLKYLKYKLLLLAILLLLLSALLS---LLLPLLIGRIIDALLADLGELLELLLLLL 59

Query: 1177 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1236
             L LL  +L          L    +  L   LF  LL   L  F       L+      +
Sbjct: 60   LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDV 119

Query: 1237 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1290
              +  L   + +L+   IL L   L L   L + L  + LL+  LL  ++  L 
Sbjct: 120  EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 55/174 (31%), Positives = 71/174 (40%), Gaps = 3/174 (1%)

Query: 1149 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1208
            LL  LL +L   L LL  L LLL  LL    LLL LL+  +I  L   L   L LL LLL
Sbjct: 3    LLRRLLKYLKYKLLLLAILLLLLSALLS---LLLPLLIGRIIDALLADLGELLELLLLLL 59

Query: 1209 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1268
             L LL  +L          L    +  L   LF  LL   L  F       L+      +
Sbjct: 60   LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDV 119

Query: 1269 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1322
              +  L   + +L+   IL L   L L   L + L  + LL+  LL  ++  L 
Sbjct: 120  EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|217785 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 73/305 (23%), Positives = 110/305 (36%), Gaps = 9/305 (2%)

Query: 1044 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1103
             + LLF      L  LFL     +     LLL          L+  +  L         L
Sbjct: 57   FYPLLFALPYKLLARLFLDSKYLVFYAPRLLLGLFSALADYYLYRAVCRLYGKEIARWAL 116

Query: 1104 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1163
             L L    +F      L   F ++   + L+  L    +        +L  + LI  L +
Sbjct: 117  LLSLSSWGMFYASTRTLPNSFEMILTSIALYYLLEYGSVPNTSVSYKYLKAVLLIAALAI 176

Query: 1164 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1223
            L      LL+L L L+ LL L    L L LFL + L LL+L L+L   +L+        +
Sbjct: 177  LGRPTSALLWLPLVLYHLLRLPGKRLKLFLFLAISLGLLVLLLVLGAVILIDSYFYGRFV 236

Query: 1224 PLFLLLFLFLLLLFLL--------LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1275
               L    + +L             + F      +L   L  F+L  L L+   LLL   
Sbjct: 237  FTPLNFLKYNVLSNGSSLYGTHPWYWYFSNGLPNILGPFLLAFILGPLVLVSRLLLLLAP 296

Query: 1276 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLF 1335
            +L++L +  L  P     FL+ +   + L   + L  L     +   L L   LL   + 
Sbjct: 297  ILIWLFVYSLQ-PHKEERFLYPIYPLICLSAAIALDRLSRKWKVSKKLSLLFLLLFFNVS 355

Query: 1336 LLLLF 1340
            L L F
Sbjct: 356  LALFF 360

Members of this family are mannosyltransferase enzymes. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis. Length = 412

>gnl|CDD|217785 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 74/308 (24%), Positives = 111/308 (36%), Gaps = 9/308 (2%)

Query: 788  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 847
             + LLF      L  LFL     +     LLL          L+  +  L         L
Sbjct: 57   FYPLLFALPYKLLARLFLDSKYLVFYAPRLLLGLFSALADYYLYRAVCRLYGKEIARWAL 116

Query: 848  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 907
             L L    +F      L   F ++   + L+  L    +        +L  + LI  L +
Sbjct: 117  LLSLSSWGMFYASTRTLPNSFEMILTSIALYYLLEYGSVPNTSVSYKYLKAVLLIAALAI 176

Query: 908  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 967
            L      LL+L L L+ LL L    L L LFL + L LL+L L+L   +L+        +
Sbjct: 177  LGRPTSALLWLPLVLYHLLRLPGKRLKLFLFLAISLGLLVLLLVLGAVILIDSYFYGRFV 236

Query: 968  PLFLLLFLFLLLLFLL--------LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1019
               L    + +L             + F      +L   L  F+L  L L+   LLL   
Sbjct: 237  FTPLNFLKYNVLSNGSSLYGTHPWYWYFSNGLPNILGPFLLAFILGPLVLVSRLLLLLAP 296

Query: 1020 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1079
            +L++L +  L  P     FL+ +   + L   + L  L     +   L L   LL   + 
Sbjct: 297  ILIWLFVYSLQ-PHKEERFLYPIYPLICLSAAIALDRLSRKWKVSKKLSLLFLLLFFNVS 355

Query: 1080 LFLFLLLF 1087
            L LF  L 
Sbjct: 356  LALFFGLV 363

Members of this family are mannosyltransferase enzymes. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis. Length = 412

>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane (putative immunity) protein

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 2/141 (1%)

Query: 796 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL--LLFLFLLLLF 853
            +L +L L LI+   L L  +L++    + ++ L    L  ++  LF     +L +  L 
Sbjct: 167 NILVILALLLIVIFVLFLIYYLMINMKRVAIYRLNGFSLRKILFRLFSKNCTYLLISALL 226

Query: 854 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 913
           +LL    LLF+     +L  ++ +    +LL LLL L +    LLL   + L   +    
Sbjct: 227 ILLLSSFLLFIKGYTYLLKDYIFMLSLSVLLLLLLLLIISFLTLLLLSKMSLANSIKGKS 286

Query: 914 LLLFLLLFLFLLLFLLLLFLI 934
              FLL+  ++   +LL+ +I
Sbjct: 287 SFKFLLIINYVCKLVLLVLVI 307

This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear [Cellular processes, Toxin production and resistance]. Length = 679

>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane (putative immunity) protein

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 2/141 (1%)

Query: 860 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL--LLFLFLLLLF 917
            +L +L L LI+   L L  +L++    + ++ L    L  ++  LF     +L +  L 
Sbjct: 167 NILVILALLLIVIFVLFLIYYLMINMKRVAIYRLNGFSLRKILFRLFSKNCTYLLISALL 226

Query: 918 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 977
           +LL    LLF+     +L  ++ +    +LL LLL L +    LLL   + L   +    
Sbjct: 227 ILLLSSFLLFIKGYTYLLKDYIFMLSLSVLLLLLLLLIISFLTLLLLSKMSLANSIKGKS 286

Query: 978 LLLFLLLFLFLLLFLLLLFLI 998
              FLL+  ++   +LL+ +I
Sbjct: 287 SFKFLLIINYVCKLVLLVLVI 307

This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear [Cellular processes, Toxin production and resistance]. Length = 679

>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane (putative immunity) protein

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 2/141 (1%)

Query: 924  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL--LLFLFLLLLF 981
             +L +L L LI+   L L  +L++    + ++ L    L  ++  LF     +L +  L 
Sbjct: 167  NILVILALLLIVIFVLFLIYYLMINMKRVAIYRLNGFSLRKILFRLFSKNCTYLLISALL 226

Query: 982  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1041
            +LL    LLF+     +L  ++ +    +LL LLL L +    LLL   + L   +    
Sbjct: 227  ILLLSSFLLFIKGYTYLLKDYIFMLSLSVLLLLLLLLIISFLTLLLLSKMSLANSIKGKS 286

Query: 1042 LLLFLLLFLFLLLFLLLLFLI 1062
               FLL+  ++   +LL+ +I
Sbjct: 287  SFKFLLIINYVCKLVLLVLVI 307

This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear [Cellular processes, Toxin production and resistance]. Length = 679

>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane (putative immunity) protein

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 2/141 (1%)

Query: 988  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL--LLFLFLLLLF 1045
             +L +L L LI+   L L  +L++    + ++ L    L  ++  LF     +L +  L 
Sbjct: 167  NILVILALLLIVIFVLFLIYYLMINMKRVAIYRLNGFSLRKILFRLFSKNCTYLLISALL 226

Query: 1046 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1105
            +LL    LLF+     +L  ++ +    +LL LLL L +    LLL   + L   +    
Sbjct: 227  ILLLSSFLLFIKGYTYLLKDYIFMLSLSVLLLLLLLLIISFLTLLLLSKMSLANSIKGKS 286

Query: 1106 LLLFLLLFLFLLLFLLLLFLI 1126
               FLL+  ++   +LL+ +I
Sbjct: 287  SFKFLLIINYVCKLVLLVLVI 307

This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear [Cellular processes, Toxin production and resistance]. Length = 679

>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane (putative immunity) protein

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 2/141 (1%)

Query: 1052 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL--LLFLFLLLLF 1109
             +L +L L LI+   L L  +L++    + ++ L    L  ++  LF     +L +  L 
Sbjct: 167  NILVILALLLIVIFVLFLIYYLMINMKRVAIYRLNGFSLRKILFRLFSKNCTYLLISALL 226

Query: 1110 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1169
            +LL    LLF+     +L  ++ +    +LL LLL L +    LLL   + L   +    
Sbjct: 227  ILLLSSFLLFIKGYTYLLKDYIFMLSLSVLLLLLLLLIISFLTLLLLSKMSLANSIKGKS 286

Query: 1170 LLLFLLLFLFLLLFLLLLFLI 1190
               FLL+  ++   +LL+ +I
Sbjct: 287  SFKFLLIINYVCKLVLLVLVI 307

This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear [Cellular processes, Toxin production and resistance]. Length = 679

>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane (putative immunity) protein

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 2/141 (1%)

Query: 1116 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL--LLFLFLLLLF 1173
             +L +L L LI+   L L  +L++    + ++ L    L  ++  LF     +L +  L 
Sbjct: 167  NILVILALLLIVIFVLFLIYYLMINMKRVAIYRLNGFSLRKILFRLFSKNCTYLLISALL 226

Query: 1174 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1233
            +LL    LLF+     +L  ++ +    +LL LLL L +    LLL   + L   +    
Sbjct: 227  ILLLSSFLLFIKGYTYLLKDYIFMLSLSVLLLLLLLLIISFLTLLLLSKMSLANSIKGKS 286

Query: 1234 LLLFLLLFLFLLLFLLLLFLI 1254
               FLL+  ++   +LL+ +I
Sbjct: 287  SFKFLLIINYVCKLVLLVLVI 307

This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear [Cellular processes, Toxin production and resistance]. Length = 679

>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane (putative immunity) protein

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 2/141 (1%)

Query: 1180 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL--LLFLFLLLLF 1237
             +L +L L LI+   L L  +L++    + ++ L    L  ++  LF     +L +  L 
Sbjct: 167  NILVILALLLIVIFVLFLIYYLMINMKRVAIYRLNGFSLRKILFRLFSKNCTYLLISALL 226

Query: 1238 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1297
            +LL    LLF+     +L  ++ +    +LL LLL L +    LLL   + L   +    
Sbjct: 227  ILLLSSFLLFIKGYTYLLKDYIFMLSLSVLLLLLLLLIISFLTLLLLSKMSLANSIKGKS 286

Query: 1298 LLLFLLLFLFLLLFLLLLFLI 1318
               FLL+  ++   +LL+ +I
Sbjct: 287  SFKFLLIINYVCKLVLLVLVI 307

This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear [Cellular processes, Toxin production and resistance]. Length = 679

>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit

 Score = 44.7 bits (106), Expect = 4e-04
 Identities = 47/230 (20%), Positives = 84/230 (36%), Gaps = 8/230 (3%)

Query: 783  LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 842
            +   +L  L    + L      + L +  LLF+  LL+       LL+ +   +LI  + 
Sbjct: 175  IIYAVLAGLPLFLMALAWGGYQVFLLILALLFILALLIMGRFEPKLLILVGFSYLIATIV 234

Query: 843  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 902
              +  +L + F  +     +   L+F +  L       +  ++L  + F  L    LFL+
Sbjct: 235  GGIIQYLFVGFAKVRSSEHMGAFLVFGLAQLLAFG-SVVKGVYLSFYQFETLTYPGLFLV 293

Query: 903  L---PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF---LFLLLLFLLLFLFL 956
            L      L L   L  + L    F  LF      I  + L+       L  L   L   +
Sbjct: 294  LGLIGPVLFLLGLLGFIALWTGRFYSLFDYAKIDIPTIILISEWQPTGLYALLAGLRFLI 353

Query: 957  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL-LLFLLLLFLILPLFLLL 1005
              F L L     L   L +F  +  +    FL ++   ++  + P+  L+
Sbjct: 354  FTFPLGLIFCGLLLEDLAVFSFIYSVSQLRFLGVMVFPIMLTLAPVIALI 403

This family consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines. Length = 650

>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion]

 Score = 44.0 bits (104), Expect = 4e-04
 Identities = 52/179 (29%), Positives = 65/179 (36%), Gaps = 9/179 (5%)

Query: 788 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 847
            F LL   +LL  L+LFL  P   +L    +LL  L   F   F  L F      LL  L
Sbjct: 7   RFRLLRRLVLLATLILFLSTPWLRVLGSQAVLLDFLGRPF--GFFGLQFWAQEFLLLALL 64

Query: 848 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 907
            +  LF L  + LLL  +    + P         +L  L   L   LF L         L
Sbjct: 65  LIGALFGLFLITLLLGRVFCGWVCP-------QGVLTELAEGLRNKLFKLQKAPWPLRKL 117

Query: 908 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 966
            L L   LLFLL+ L LL   +  +      LL  L       L      +F  LL   
Sbjct: 118 RLKLLKYLLFLLILLLLLYSWIGAYFAPVEPLLGRLLTGGFGRLAIGLFAVFAFLLLGF 176

Length = 386

>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion]

 Score = 44.0 bits (104), Expect = 4e-04
 Identities = 52/179 (29%), Positives = 65/179 (36%), Gaps = 9/179 (5%)

Query: 916  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 975
             F LL   +LL  L+LFL  P   +L    +LL  L   F   F  L F      LL  L
Sbjct: 7    RFRLLRRLVLLATLILFLSTPWLRVLGSQAVLLDFLGRPF--GFFGLQFWAQEFLLLALL 64

Query: 976  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1035
             +  LF L  + LLL  +    + P         +L  L   L   LF L         L
Sbjct: 65   LIGALFGLFLITLLLGRVFCGWVCP-------QGVLTELAEGLRNKLFKLQKAPWPLRKL 117

Query: 1036 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1094
             L L   LLFLL+ L LL   +  +      LL  L       L      +F  LL   
Sbjct: 118  RLKLLKYLLFLLILLLLLYSWIGAYFAPVEPLLGRLLTGGFGRLAIGLFAVFAFLLLGF 176

Length = 386

>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion]

 Score = 44.0 bits (104), Expect = 4e-04
 Identities = 52/179 (29%), Positives = 65/179 (36%), Gaps = 9/179 (5%)

Query: 1076 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1135
             F LL   +LL  L+LFL  P   +L    +LL  L   F   F  L F      LL  L
Sbjct: 7    RFRLLRRLVLLATLILFLSTPWLRVLGSQAVLLDFLGRPF--GFFGLQFWAQEFLLLALL 64

Query: 1136 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1195
             +  LF L  + LLL  +    + P         +L  L   L   LF L         L
Sbjct: 65   LIGALFGLFLITLLLGRVFCGWVCP-------QGVLTELAEGLRNKLFKLQKAPWPLRKL 117

Query: 1196 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1254
             L L   LLFLL+ L LL   +  +      LL  L       L      +F  LL   
Sbjct: 118  RLKLLKYLLFLLILLLLLYSWIGAYFAPVEPLLGRLLTGGFGRLAIGLFAVFAFLLLGF 176

Length = 386

>gnl|CDD|226122 COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 62/254 (24%), Positives = 97/254 (38%), Gaps = 6/254 (2%)

Query: 1093 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1152
            LI+P      ++ +L FLL      L L  +     L+ L+ LF   L LL    L+  L
Sbjct: 74   LIVPYIFFFLIYSILYFLLRKFNSELTLNFILPGWELWFLVILFFWFLPLLFITKLIYNL 133

Query: 1153 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1212
            + ++L + + L++ + +   F+ L L          +  P FLL  LF  L F    L  
Sbjct: 134  IAVWLAVSVSLIILILVGFFFIPLSL---GSFSRTLVFFPFFLLGTLFAKLHFWFGGLLR 190

Query: 1213 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1272
                L + +   L  ++FL + L F   +L   +       I    LL  L L L    L
Sbjct: 191  TYKGLRVNIKSFLAAVIFLAVGLAFNYSWLLGSMPYSSFGNIFVGGLLRALVLGLALNAL 250

Query: 1273 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1332
              F      L  L+  L        LL   +  +  L F +L      L    FL +LL+
Sbjct: 251  VRFAAKIPQLRKLVTKLGKNTLYIYLLHGFVFKVLRLQFGILNLSTSYLA---FLPILLI 307

Query: 1333 FLFLLLLFLLSSFS 1346
               +++  L   F 
Sbjct: 308  VSLIIIAVLSRVFL 321

Length = 343

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 796 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 855
           L L L L  ++LPL L L L++  L   L L+ +L       + P +LLL L L     L
Sbjct: 8   LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 856 LFLFLLLF-------LLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 900
              +  L        LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68  ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 901 LILPLFLLLFLFLLL------------LFLLLFLFLLLFLLLLFLILP 936
           L+L L LLL   + L            L   L L  L   L+LFL+ P
Sbjct: 128 LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLFP 175

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 828 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 887
           L L L L  ++LPL L L L++  L   L L+ +L       + P +LLL L L     L
Sbjct: 8   LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 888 LFLFLLLF-------LLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 932
              +  L        LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68  ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 933 LILPLFLLLFLFLLL------------LFLLLFLFLLLFLLLLFLILP 968
           L+L L LLL   + L            L   L L  L   L+LFL+ P
Sbjct: 128 LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLFP 175

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 860  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 919
            L L L L  ++LPL L L L++  L   L L+ +L       + P +LLL L L     L
Sbjct: 8    LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 920  LFLFLLLF-------LLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 964
               +  L        LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68   ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 965  LILPLFLLLFLFLLL------------LFLLLFLFLLLFLLLLFLILP 1000
            L+L L LLL   + L            L   L L  L   L+LFL+ P
Sbjct: 128  LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLFP 175

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 892  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 951
            L L L L  ++LPL L L L++  L   L L+ +L       + P +LLL L L     L
Sbjct: 8    LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 952  LFLFLLLF-------LLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 996
               +  L        LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68   ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 997  LILPLFLLLFLFLLL------------LFLLLFLFLLLFLLLLFLILP 1032
            L+L L LLL   + L            L   L L  L   L+LFL+ P
Sbjct: 128  LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLFP 175

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 924  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 983
            L L L L  ++LPL L L L++  L   L L+ +L       + P +LLL L L     L
Sbjct: 8    LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 984  LFLFLLLF-------LLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 1028
               +  L        LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68   ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 1029 LILPLFLLLFLFLLL------------LFLLLFLFLLLFLLLLFLILP 1064
            L+L L LLL   + L            L   L L  L   L+LFL+ P
Sbjct: 128  LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLFP 175

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 956  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1015
            L L L L  ++LPL L L L++  L   L L+ +L       + P +LLL L L     L
Sbjct: 8    LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 1016 LFLFLLLF-------LLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 1060
               +  L        LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68   ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 1061 LILPLFLLLFLFLLL------------LFLLLFLFLLLFLLLLFLILP 1096
            L+L L LLL   + L            L   L L  L   L+LFL+ P
Sbjct: 128  LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLFP 175

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 988  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1047
            L L L L  ++LPL L L L++  L   L L+ +L       + P +LLL L L     L
Sbjct: 8    LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 1048 LFLFLLLF-------LLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 1092
               +  L        LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68   ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 1093 LILPLFLLLFLFLLL------------LFLLLFLFLLLFLLLLFLILP 1128
            L+L L LLL   + L            L   L L  L   L+LFL+ P
Sbjct: 128  LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLFP 175

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 1020 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1079
            L L L L  ++LPL L L L++  L   L L+ +L       + P +LLL L L     L
Sbjct: 8    LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 1080 LFLFLLLF-------LLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 1124
               +  L        LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68   ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 1125 LILPLFLLLFLFLLL------------LFLLLFLFLLLFLLLLFLILP 1160
            L+L L LLL   + L            L   L L  L   L+LFL+ P
Sbjct: 128  LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLFP 175

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 1052 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1111
            L L L L  ++LPL L L L++  L   L L+ +L       + P +LLL L L     L
Sbjct: 8    LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 1112 LFLFLLLF-------LLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 1156
               +  L        LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68   ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 1157 LILPLFLLLFLFLLL------------LFLLLFLFLLLFLLLLFLILP 1192
            L+L L LLL   + L            L   L L  L   L+LFL+ P
Sbjct: 128  LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLFP 175

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 1084 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1143
            L L L L  ++LPL L L L++  L   L L+ +L       + P +LLL L L     L
Sbjct: 8    LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 1144 LFLFLLLF-------LLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 1188
               +  L        LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68   ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 1189 LILPLFLLLFLFLLL------------LFLLLFLFLLLFLLLLFLILP 1224
            L+L L LLL   + L            L   L L  L   L+LFL+ P
Sbjct: 128  LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLFP 175

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 1116 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1175
            L L L L  ++LPL L L L++  L   L L+ +L       + P +LLL L L     L
Sbjct: 8    LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 1176 LFLFLLLF-------LLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 1220
               +  L        LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68   ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 1221 LILPLFLLLFLFLLL------------LFLLLFLFLLLFLLLLFLILP 1256
            L+L L LLL   + L            L   L L  L   L+LFL+ P
Sbjct: 128  LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLFP 175

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 1148 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1207
            L L L L  ++LPL L L L++  L   L L+ +L       + P +LLL L L     L
Sbjct: 8    LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 1208 LFLFLLLF-------LLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 1252
               +  L        LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68   ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 1253 LILPLFLLLFLFLLL------------LFLLLFLFLLLFLLLLFLILP 1288
            L+L L LLL   + L            L   L L  L   L+LFL+ P
Sbjct: 128  LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLFP 175

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488)

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 27/168 (16%)

Query: 1180 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1239
            L L L L  ++LPL L L L++  L   L L+ +L       + P +LLL L L     L
Sbjct: 8    LWLLLALALVLLPLALHLPLWVSALCAALLLWRVLLWRGRVPLPPRWLLLGLALAAAAGL 67

Query: 1240 LFLFLLLF-------LLLLFLILPLFLL------LFLFLLLLFLLL--FLFLLLFLLLLF 1284
               +  L        LL+L L L L  L        L  L  FLL   FLF    L  L+
Sbjct: 68   ALQYGTLGGLDAGVALLVLLLALKLLELRSRRDARVLVFLGFFLLATNFLFSQSLLTALY 127

Query: 1285 LILPLFLLLFLFLLL------------LFLLLFLFLLLFLLLLFLILP 1320
            L+L L LLL   + L            L   L L  L   L+LFL+ P
Sbjct: 128  LLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLALVLFLLFP 175

This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices. Length = 321

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 788 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 847
           L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4   LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 848 FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 903
            +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62  EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 820 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 879
           L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4   LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 880 FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 935
            +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62  EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 852 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 911
           L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4   LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 912 FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 967
            +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62  EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 884 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 943
           L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4   LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 944 FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 999
            +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62  EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 916  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 975
            L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 976  FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1031
             +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62   EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 948  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1007
            L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 1008 FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1063
             +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62   EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 980  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1039
            L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 1040 FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1095
             +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62   EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 1012 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1071
            L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 1072 FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1127
             +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62   EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 1044 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1103
            L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 1104 FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1159
             +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62   EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 1076 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1135
            L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 1136 FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1191
             +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62   EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 1108 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1167
            L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 1168 FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1223
             +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62   EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 1140 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1199
            L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 1200 FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1255
             +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62   EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 1172 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1231
            L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 1232 FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1287
             +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62   EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.5 bits (106), Expect = 4e-04
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 1204 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1263
            L L+L   LL +LL         +  +L LLLL +   LFLL+F L              
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 1264 FLLLLFLLLFLF-LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1319
             +LL  LL +    L+  LL FL+        L+LLL FLL    LLL  L+L L+L
Sbjct: 62   EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function unknown]

 Score = 44.6 bits (106), Expect = 4e-04
 Identities = 45/197 (22%), Positives = 61/197 (30%), Gaps = 15/197 (7%)

Query: 920  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 979
              + LL+  +L  L+    ++L        L   L LL  ++ L LI    L   L   L
Sbjct: 7    WLVRLLVPQILAILVFLSGVILLFSGATPSLDERLRLLPRIVPLPLIEASHLTASLLGAL 66

Query: 980  LFLLL-----FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF---LIL 1031
            L LL       L       L+ LIL L L L    L       LFL+  LLL        
Sbjct: 67   LLLLARGLRKRLKRAWIAALIVLILGLVLSLAKG-LAWIEAAVLFLIAVLLLAGRRAFYR 125

Query: 1032 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL------FLLLFLFLLLLFLLLFLFLL 1085
               LL+            + L     L                 F F       L   L 
Sbjct: 126  KSLLLVQSISPGWLAAFIVALAAANWLGGFAYADVEYSNDLWWEFPFTGSAPRFLRALLG 185

Query: 1086 LFLLLLFLILPLFLLLF 1102
            +F+ L+ L +   L   
Sbjct: 186  VFIALIALGIWALLRPR 202

Length = 538

>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function unknown]

 Score = 44.6 bits (106), Expect = 4e-04
 Identities = 45/197 (22%), Positives = 61/197 (30%), Gaps = 15/197 (7%)

Query: 984  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1043
              + LL+  +L  L+    ++L        L   L LL  ++ L LI    L   L   L
Sbjct: 7    WLVRLLVPQILAILVFLSGVILLFSGATPSLDERLRLLPRIVPLPLIEASHLTASLLGAL 66

Query: 1044 LFLLL-----FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF---LIL 1095
            L LL       L       L+ LIL L L L    L       LFL+  LLL        
Sbjct: 67   LLLLARGLRKRLKRAWIAALIVLILGLVLSLAKG-LAWIEAAVLFLIAVLLLAGRRAFYR 125

Query: 1096 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL------FLLLFLFLLLLFLLLFLFLL 1149
               LL+            + L     L                 F F       L   L 
Sbjct: 126  KSLLLVQSISPGWLAAFIVALAAANWLGGFAYADVEYSNDLWWEFPFTGSAPRFLRALLG 185

Query: 1150 LFLLLLFLILPLFLLLF 1166
            +F+ L+ L +   L   
Sbjct: 186  VFIALIALGIWALLRPR 202

Length = 538

>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function unknown]

 Score = 44.6 bits (106), Expect = 4e-04
 Identities = 45/197 (22%), Positives = 61/197 (30%), Gaps = 15/197 (7%)

Query: 1048 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1107
              + LL+  +L  L+    ++L        L   L LL  ++ L LI    L   L   L
Sbjct: 7    WLVRLLVPQILAILVFLSGVILLFSGATPSLDERLRLLPRIVPLPLIEASHLTASLLGAL 66

Query: 1108 LFLLL-----FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF---LIL 1159
            L LL       L       L+ LIL L L L    L       LFL+  LLL        
Sbjct: 67   LLLLARGLRKRLKRAWIAALIVLILGLVLSLAKG-LAWIEAAVLFLIAVLLLAGRRAFYR 125

Query: 1160 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL------FLLLFLFLLLLFLLLFLFLL 1213
               LL+            + L     L                 F F       L   L 
Sbjct: 126  KSLLLVQSISPGWLAAFIVALAAANWLGGFAYADVEYSNDLWWEFPFTGSAPRFLRALLG 185

Query: 1214 LFLLLLFLILPLFLLLF 1230
            +F+ L+ L +   L   
Sbjct: 186  VFIALIALGIWALLRPR 202

Length = 538

>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function unknown]

 Score = 44.6 bits (106), Expect = 4e-04
 Identities = 45/197 (22%), Positives = 61/197 (30%), Gaps = 15/197 (7%)

Query: 1112 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1171
              + LL+  +L  L+    ++L        L   L LL  ++ L LI    L   L   L
Sbjct: 7    WLVRLLVPQILAILVFLSGVILLFSGATPSLDERLRLLPRIVPLPLIEASHLTASLLGAL 66

Query: 1172 LFLLL-----FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF---LIL 1223
            L LL       L       L+ LIL L L L    L       LFL+  LLL        
Sbjct: 67   LLLLARGLRKRLKRAWIAALIVLILGLVLSLAKG-LAWIEAAVLFLIAVLLLAGRRAFYR 125

Query: 1224 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL------FLLLFLFLLLLFLLLFLFLL 1277
               LL+            + L     L                 F F       L   L 
Sbjct: 126  KSLLLVQSISPGWLAAFIVALAAANWLGGFAYADVEYSNDLWWEFPFTGSAPRFLRALLG 185

Query: 1278 LFLLLLFLILPLFLLLF 1294
            +F+ L+ L +   L   
Sbjct: 186  VFIALIALGIWALLRPR 202

Length = 538

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 44.5 bits (105), Expect = 4e-04
 Identities = 47/144 (32%), Positives = 68/144 (47%)

Query: 795 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 854
            L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284 GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 855 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 914
           L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344 LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 915 LLFLLLFLFLLLFLLLLFLILPLF 938
            L L+L L LL  +    L L + 
Sbjct: 404 PLILILNLTLLKTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 44.5 bits (105), Expect = 4e-04
 Identities = 47/144 (32%), Positives = 68/144 (47%)

Query: 827 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 886
            L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284 GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 887 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 946
           L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344 LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 947 LLFLLLFLFLLLFLLLLFLILPLF 970
            L L+L L LL  +    L L + 
Sbjct: 404 PLILILNLTLLKTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 44.5 bits (105), Expect = 4e-04
 Identities = 47/144 (32%), Positives = 68/144 (47%)

Query: 859  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 918
             L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284  GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 919  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 978
            L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344  LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 979  LLFLLLFLFLLLFLLLLFLILPLF 1002
             L L+L L LL  +    L L + 
Sbjct: 404  PLILILNLTLLKTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 44.5 bits (105), Expect = 4e-04
 Identities = 47/144 (32%), Positives = 68/144 (47%)

Query: 891  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 950
             L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284  GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 951  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1010
            L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344  LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 1011 LLFLLLFLFLLLFLLLLFLILPLF 1034
             L L+L L LL  +    L L + 
Sbjct: 404  PLILILNLTLLKTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 44.5 bits (105), Expect = 4e-04
 Identities = 47/144 (32%), Positives = 68/144 (47%)

Query: 923  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 982
             L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284  GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 983  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1042
            L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344  LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 1043 LLFLLLFLFLLLFLLLLFLILPLF 1066
             L L+L L LL  +    L L + 
Sbjct: 404  PLILILNLTLLKTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 44.5 bits (105), Expect = 4e-04
 Identities = 47/144 (32%), Positives = 68/144 (47%)

Query: 955  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1014
             L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284  GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 1015 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1074
            L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344  LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 1075 LLFLLLFLFLLLFLLLLFLILPLF 1098
             L L+L L LL  +    L L + 
Sbjct: 404  PLILILNLTLLKTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 44.5 bits (105), Expect = 4e-04
 Identities = 47/144 (32%), Positives = 68/144 (47%)

Query: 987  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1046
             L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284  GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 1047 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1106
            L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344  LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 1107 LLFLLLFLFLLLFLLLLFLILPLF 1130
             L L+L L LL  +    L L + 
Sbjct: 404  PLILILNLTLLKTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 44.5 bits (105), Expect = 4e-04
 Identities = 47/144 (32%), Positives = 68/144 (47%)

Query: 1019 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1078
             L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284  GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 1079 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1138
            L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344  LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 1139 LLFLLLFLFLLLFLLLLFLILPLF 1162
             L L+L L LL  +    L L + 
Sbjct: 404  PLILILNLTLLKTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 44.5 bits (105), Expect = 4e-04
 Identities = 47/144 (32%), Positives = 68/144 (47%)

Query: 1051 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1110
             L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284  GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 1111 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1170
            L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344  LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 1171 LLFLLLFLFLLLFLLLLFLILPLF 1194
             L L+L L LL  +    L L + 
Sbjct: 404  PLILILNLTLLKTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 44.5 bits (105), Expect = 4e-04
 Identities = 47/144 (32%), Positives = 68/144 (47%)

Query: 1083 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1142
             L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284  GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 1143 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1202
            L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344  LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 1203 LLFLLLFLFLLLFLLLLFLILPLF 1226
             L L+L L LL  +    L L + 
Sbjct: 404  PLILILNLTLLKTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 44.5 bits (105), Expect = 4e-04
 Identities = 47/144 (32%), Positives = 68/144 (47%)

Query: 1115 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1174
             L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284  GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 1175 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1234
            L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344  LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 1235 LLFLLLFLFLLLFLLLLFLILPLF 1258
             L L+L L LL  +    L L + 
Sbjct: 404  PLILILNLTLLKTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 44.5 bits (105), Expect = 4e-04
 Identities = 47/144 (32%), Positives = 68/144 (47%)

Query: 1147 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1206
             L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284  GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 1207 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1266
            L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344  LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 1267 LLFLLLFLFLLLFLLLLFLILPLF 1290
             L L+L L LL  +    L L + 
Sbjct: 404  PLILILNLTLLKTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 44.5 bits (105), Expect = 4e-04
 Identities = 47/144 (32%), Positives = 68/144 (47%)

Query: 1179 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1238
             L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284  GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 1239 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1298
            L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344  LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 1299 LLFLLLFLFLLLFLLLLFLILPLF 1322
             L L+L L LL  +    L L + 
Sbjct: 404  PLILILNLTLLKTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 44.4 bits (106), Expect = 4e-04
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA---GGD 197
             +D I++GA  AG  LA R +    +KV LIE    GG 
Sbjct: 4   QRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERGLLGGT 42

Length = 463

>gnl|CDD|227621 COG5305, COG5305, Predicted membrane protein [Function unknown]

 Score = 44.3 bits (105), Expect = 4e-04
 Identities = 99/397 (24%), Positives = 151/397 (38%), Gaps = 17/397 (4%)

Query: 792  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 851
             +L  L    L+ LIL   + L          +  + LL  LL+  +             
Sbjct: 9    SWLEFLDLDELVTLILLRSVNLGYKPYWDDEAVTSYRLLASLLISFLQQPIDGAIASAPY 68

Query: 852  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI--LPLFLLL 909
            L+L  F  +     ++  +L L L L +   L FLL   ++ LF   L     L   L  
Sbjct: 69   LWLDEFQSISASKTVIETVLSLLLELLVHPPLYFLLAHFWMALFGNSLLASRSLSALLSA 128

Query: 910  FLFLLLLFLLLFLF---LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 966
                L+ +L   LF     L    L  I P  +          L +   L+   LLL  I
Sbjct: 129  LAIPLVYWLGRELFGSTTALLAAALMAISPFHIFYSQEARSYALAVATTLISATLLLRAI 188

Query: 967  -LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1025
             LP    L    L+  LLL L LL        ++   + + L+  L          LFL+
Sbjct: 189  RLPTSRKLLPGWLIYALLLILSLLTHYFFALTVIAHGVYVLLWASLKNR-----QSLFLI 243

Query: 1026 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1085
               L     LL FL  LL++      + +  L+    +   L+  ++ L+   LL   LL
Sbjct: 244  WWLLATAAGLLAFLPWLLVYFANSFRVGIPDLITLDGIVGQLINPIYPLIAAWLLAFSLL 303

Query: 1086 LFLLLLFLILPLFLLL-FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1144
             F LL  L  P+  +  FL+ + L ++L L  L  L        L     LF+L L +  
Sbjct: 304  FFDLLHGLDFPINGVARFLYPIWLAIILILGALYTLCRATERKIL-----LFILTLIIAP 358

Query: 1145 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1181
             L L+L  L+   I     L+  +L+LL  + +L LL
Sbjct: 359  ALPLILSDLVSVFITRNPYLIPSYLILLLGVAYLNLL 395

Length = 552

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 44.0 bits (104), Expect = 5e-04
 Identities = 104/362 (28%), Positives = 148/362 (40%), Gaps = 2/362 (0%)

Query: 768  AIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 827
            A++ +  +++ LLL L  +L  L         L L  +     L     LL   L L ++
Sbjct: 117  ALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSSIFLLAAVFALLFAALGLAVW 176

Query: 828  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 887
             L+   ++ L++ L LL      L   +L   L L   LL   LPL L   L  L   + 
Sbjct: 177  ALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNID 236

Query: 888  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 947
              L  L        I      L   LL++   L   L   L   +       L  L    
Sbjct: 237  TLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQS 296

Query: 948  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1007
            L LLL + +   L LL L  P+  LLF         +   L L  L L L+     LL  
Sbjct: 297  LKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQA 356

Query: 1008 F--LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1065
                 LL L+  +  LL L+L  L++P F L+   +    ++    LL ++L L L+   
Sbjct: 357  LGKQRLLLLISLISALLNLILNLLLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTK 416

Query: 1066 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1125
            F    L  L    LL L +L  L LL  +L L L+L    +LLFLLL L  L+ +LLL L
Sbjct: 417  FSYFLLLKLAALALLLLAILGLLELLVALLLLLLVLLALGILLFLLLLLIALVLILLLRL 476

Query: 1126 IL 1127
            +L
Sbjct: 477  LL 478

Length = 480

>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 44.0 bits (105), Expect = 5e-04
 Identities = 51/191 (26%), Positives = 72/191 (37%), Gaps = 14/191 (7%)

Query: 1165 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1224
            L    +LLFL+   FL     L+  +L L   LF+ L  L          F L L     
Sbjct: 2    LKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGL 61

Query: 1225 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1284
            + L  ++ +L++     ++       LFL L LFLL+FL L    + L LF + F   L 
Sbjct: 62   ILLSFWICMLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLI 121

Query: 1285 LILPLFL--------LLFLFLLLLFLLLFLFLLLFLLLL------FLILPLFLLLFLFLL 1330
              L L L        L     LL + L     LL  +         L   L         
Sbjct: 122  PTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLNF 181

Query: 1331 LLFLFLLLLFL 1341
            L +L ++L FL
Sbjct: 182  LWYLSMILAFL 192

Length = 445

>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

 Score = 43.9 bits (104), Expect = 5e-04
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 7/114 (6%)

Query: 1230 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL-LLFLFLLLFLL-LLFLIL 1287
             + LLL FL L   LL     +  I+   LLL  F  LLFL + +  LLL +L  + ++ 
Sbjct: 238  LILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVA 297

Query: 1288 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL-----PLFLLLFLFLLLLFLFL 1336
              F+  F  + LL ++LF+  LL L     +       LFL L +  +L  +FL
Sbjct: 298  EAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFL 351

Length = 436

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 44.1 bits (105), Expect = 5e-04
 Identities = 38/114 (33%), Positives = 48/114 (42%)

Query: 1232 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1291
             LL+L  LL  +LL F       +  +L L L  +LLFLL+F    L+           +
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63

Query: 1292 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSF 1345
            LL + L      L L LL FLL          LL  FLL L L LL   +L   
Sbjct: 64   LLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLL 117

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|217721 pfam03772, Competence, Competence protein

 Score = 43.3 bits (103), Expect = 5e-04
 Identities = 79/236 (33%), Positives = 96/236 (40%), Gaps = 9/236 (3%)

Query: 1109 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL---------FLLLFLLLLFLIL 1159
             +   + LLL  LLL         L   L LL   L            ++L L+LL L+L
Sbjct: 35   LVAGLVLLLLRRLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLLLVLLALLL 94

Query: 1160 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1219
               +     L L  LLL L   L LL     L    +  L LL   L   L  L   LL 
Sbjct: 95   GRRISPLDSLALAALLLLLIDPLALLSAGFQLSFLAVAGLLLLAPRLQKRLSRLSPRLLA 154

Query: 1220 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1279
             L+L         L LL      F L+ LL   L +PL   + L L LL LLL LF  L 
Sbjct: 155  LLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPLA 214

Query: 1280 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLF 1335
             LLL+L   L  LL   L  L  L    L +    L+L+L  +LLL L LLLL   
Sbjct: 215  ALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLLLLLLLLLLLRR 270

Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site. Length = 270

>gnl|CDD|217721 pfam03772, Competence, Competence protein

 Score = 43.3 bits (103), Expect = 5e-04
 Identities = 84/236 (35%), Positives = 100/236 (42%), Gaps = 8/236 (3%)

Query: 1054 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP-------LFLLLFLFLL 1106
            L   L+ L+L   LL      L  LL  LFLLL+ LL     P       L L+L   LL
Sbjct: 35   LVAGLVLLLLRRLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLLLVLLALLL 94

Query: 1107 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1166
               +     L L  LLL LI PL LL   F  L FL +   LLL   L   +  L   L 
Sbjct: 95   GRRISPLDSLALAALLLLLIDPLALLSAGF-QLSFLAVAGLLLLAPRLQKRLSRLSPRLL 153

Query: 1167 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1226
              LLL+ L   L  L  LL  F    L  LL   L +  +   +  L  L LL  + P  
Sbjct: 154  ALLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPL 213

Query: 1227 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1282
              L L+L    L L L LL +L  L           L+LLLL+ LL L LLL LL 
Sbjct: 214  AALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLLLLLLLLLLLR 269

Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site. Length = 270

>gnl|CDD|217721 pfam03772, Competence, Competence protein

 Score = 43.3 bits (103), Expect = 5e-04
 Identities = 84/236 (35%), Positives = 100/236 (42%), Gaps = 8/236 (3%)

Query: 1086 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP-------LFLLLFLFLL 1138
            L   L+ L+L   LL      L  LL  LFLLL+ LL     P       L L+L   LL
Sbjct: 35   LVAGLVLLLLRRLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLLLVLLALLL 94

Query: 1139 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1198
               +     L L  LLL LI PL LL   F  L FL +   LLL   L   +  L   L 
Sbjct: 95   GRRISPLDSLALAALLLLLIDPLALLSAGF-QLSFLAVAGLLLLAPRLQKRLSRLSPRLL 153

Query: 1199 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1258
              LLL+ L   L  L  LL  F    L  LL   L +  +   +  L  L LL  + P  
Sbjct: 154  ALLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPL 213

Query: 1259 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1314
              L L+L    L L L LL +L  L           L+LLLL+ LL L LLL LL 
Sbjct: 214  AALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLLLLLLLLLLLR 269

Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site. Length = 270

>gnl|CDD|217721 pfam03772, Competence, Competence protein

 Score = 43.3 bits (103), Expect = 5e-04
 Identities = 79/235 (33%), Positives = 96/235 (40%), Gaps = 9/235 (3%)

Query: 1077 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL---------FLLLFLLLLFLIL 1127
             +   + LLL  LLL         L   L LL   L            ++L L+LL L+L
Sbjct: 35   LVAGLVLLLLRRLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLLLVLLALLL 94

Query: 1128 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1187
               +     L L  LLL L   L LL     L    +  L LL   L   L  L   LL 
Sbjct: 95   GRRISPLDSLALAALLLLLIDPLALLSAGFQLSFLAVAGLLLLAPRLQKRLSRLSPRLLA 154

Query: 1188 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1247
             L+L         L LL      F L+ LL   L +PL   + L L LL LLL LF  L 
Sbjct: 155  LLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPLA 214

Query: 1248 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1302
             LLL+L   L  LL   L  L  L    L +    L+L+L  +LLL L LLLL  
Sbjct: 215  ALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLLLLLLLLLLLR 269

Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site. Length = 270

>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function unknown]

 Score = 43.9 bits (104), Expect = 5e-04
 Identities = 49/195 (25%), Positives = 67/195 (34%), Gaps = 13/195 (6%)

Query: 905  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 964
            + LL+   L +L  L  + LL       L   L LL  +  L L     L   L   LL 
Sbjct: 9    VRLLVPQILAILVFLSGVILLFSGATPSLDERLRLLPRIVPLPLIEASHLTASLLGALLL 68

Query: 965  LILP---LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL--- 1018
            L+       L       L+ L+L L L L   L   I    L L   LLL     F    
Sbjct: 69   LLARGLRKRLKRAWIAALIVLILGLVLSLAKGLA-WIEAAVLFLIAVLLLAGRRAFYRKS 127

Query: 1019 FLLLFLLLLFLILPLFLLLF-LFLLLLFLLLFLFLLLFLLLLF---LILPLFL--LLFLF 1072
             LL+  +    +    + L     L  F    +     L   F      P FL  LL +F
Sbjct: 128  LLLVQSISPGWLAAFIVALAAANWLGGFAYADVEYSNDLWWEFPFTGSAPRFLRALLGVF 187

Query: 1073 LLLLFLLLFLFLLLF 1087
            + L+ L ++  L   
Sbjct: 188  IALIALGIWALLRPR 202

Length = 538

>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function unknown]

 Score = 43.9 bits (104), Expect = 5e-04
 Identities = 49/195 (25%), Positives = 67/195 (34%), Gaps = 13/195 (6%)

Query: 1033 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1092
            + LL+   L +L  L  + LL       L   L LL  +  L L     L   L   LL 
Sbjct: 9    VRLLVPQILAILVFLSGVILLFSGATPSLDERLRLLPRIVPLPLIEASHLTASLLGALLL 68

Query: 1093 LILP---LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL--- 1146
            L+       L       L+ L+L L L L   L   I    L L   LLL     F    
Sbjct: 69   LLARGLRKRLKRAWIAALIVLILGLVLSLAKGLA-WIEAAVLFLIAVLLLAGRRAFYRKS 127

Query: 1147 FLLLFLLLLFLILPLFLLLF-LFLLLLFLLLFLFLLLFLLLLF---LILPLFL--LLFLF 1200
             LL+  +    +    + L     L  F    +     L   F      P FL  LL +F
Sbjct: 128  LLLVQSISPGWLAAFIVALAAANWLGGFAYADVEYSNDLWWEFPFTGSAPRFLRALLGVF 187

Query: 1201 LLLLFLLLFLFLLLF 1215
            + L+ L ++  L   
Sbjct: 188  IALIALGIWALLRPR 202

Length = 538

>gnl|CDD|227621 COG5305, COG5305, Predicted membrane protein [Function unknown]

 Score = 44.3 bits (105), Expect = 5e-04
 Identities = 100/422 (23%), Positives = 152/422 (36%), Gaps = 22/422 (5%)

Query: 952  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1011
             +L  L    L+ LIL   + L          +  + LL  LL+  +             
Sbjct: 9    SWLEFLDLDELVTLILLRSVNLGYKPYWDDEAVTSYRLLASLLISFLQQPIDGAIASAPY 68

Query: 1012 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI--LPLFLLL 1069
            L+L  F  +     ++  +L L L L +   L FLL   ++ LF   L     L   L  
Sbjct: 69   LWLDEFQSISASKTVIETVLSLLLELLVHPPLYFLLAHFWMALFGNSLLASRSLSALLSA 128

Query: 1070 FLFLLLLFLLLFLF---LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1126
                L+ +L   LF     L    L  I P  +          L +   L+   LLL  I
Sbjct: 129  LAIPLVYWLGRELFGSTTALLAAALMAISPFHIFYSQEARSYALAVATTLISATLLLRAI 188

Query: 1127 -LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1185
             LP    L    L+  LLL L LL        ++   + + L+  L      LFL+ +LL
Sbjct: 189  RLPTSRKLLPGWLIYALLLILSLLTHYFFALTVIAHGVYVLLWASLKNRQS-LFLIWWLL 247

Query: 1186 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF-----LILPLFLLLFL-FLLLLFLL 1239
                 L  FL   L        + +  L+ L  +       I PL     L F LL F L
Sbjct: 248  ATAAGLLAFLPWLLVYFANSFRVGIPDLITLDGIVGQLINPIYPLIAAWLLAFSLLFFDL 307

Query: 1240 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL---------LFLFLLLFLLLLFLILPLF 1290
            L         +   + P++L + L L  L+ L         LF+  L+    L LIL   
Sbjct: 308  LHGLDFPINGVARFLYPIWLAIILILGALYTLCRATERKILLFILTLIIAPALPLILSDL 367

Query: 1291 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSSSSS 1350
            + +F+      +  +L LLL +  L L+     +  L       +L LL ++ S + S  
Sbjct: 368  VSVFITRNPYLIPSYLILLLGVAYLNLLGTWLTIGDLSQRRYGQYLSLLLVICSLAYSLV 427

Query: 1351 SS 1352
              
Sbjct: 428  YL 429

Length = 552

>gnl|CDD|222635 pfam14264, Glucos_trans_II, Glucosyl transferase GtrII

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 81/288 (28%), Positives = 112/288 (38%), Gaps = 2/288 (0%)

Query: 789  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 848
             LL  L  +LF   L  + PL L+L +  L L  LL   +   L    + + + LLL   
Sbjct: 31   PLLDLLKRILFGTGLTDLPPLPLILSILFLALSALLLARIF-DLRNKLIAVLIALLLVTS 89

Query: 849  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 908
               L  L + F  L + L  L+  L  L      +  LL  L L L L L    L +F+ 
Sbjct: 90   PFFLENLSYRFDSLEMALAVLLSVLAALFVSKSKIRLLLSALLLALSLGLYQASLNVFIG 149

Query: 909  LFLFLLLLFLLLF-LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 967
            L L LL+L LL     +      +   L L L   L  L++  +      + L     I 
Sbjct: 150  LCLILLILDLLDNKKSIKSLFKKILRSLALLLAGLLLYLIINKVALALFHIELSDYQGIS 209

Query: 968  PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1027
             L L L   L  +   +  F              +LL+ L LL L L+L +         
Sbjct: 210  SLILSLKDLLKSILNNIKEFFSFLKSQSGYPYYTYLLIVLLLLFLLLILLVVRKRKKRKK 269

Query: 1028 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1075
             L L LFLLL L L     L+ L   +  L   +  PL L  F F+LL
Sbjct: 270  PLALLLFLLLLLLLPFAMFLILLLAPVTALRTLMGYPLVLAFFFFILL 317

This family includes glucosyl transferase II from the Shigella phage SfII, which mediates seroconversion of S. flexneri when the phage is integrated into the host chromosome. Length = 317

>gnl|CDD|222635 pfam14264, Glucos_trans_II, Glucosyl transferase GtrII

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 81/288 (28%), Positives = 112/288 (38%), Gaps = 2/288 (0%)

Query: 821  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 880
             LL  L  +LF   L  + PL L+L +  L L  LL   +   L    + + + LLL   
Sbjct: 31   PLLDLLKRILFGTGLTDLPPLPLILSILFLALSALLLARIF-DLRNKLIAVLIALLLVTS 89

Query: 881  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 940
               L  L + F  L + L  L+  L  L      +  LL  L L L L L    L +F+ 
Sbjct: 90   PFFLENLSYRFDSLEMALAVLLSVLAALFVSKSKIRLLLSALLLALSLGLYQASLNVFIG 149

Query: 941  LFLFLLLLFLLLF-LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 999
            L L LL+L LL     +      +   L L L   L  L++  +      + L     I 
Sbjct: 150  LCLILLILDLLDNKKSIKSLFKKILRSLALLLAGLLLYLIINKVALALFHIELSDYQGIS 209

Query: 1000 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1059
             L L L   L  +   +  F              +LL+ L LL L L+L +         
Sbjct: 210  SLILSLKDLLKSILNNIKEFFSFLKSQSGYPYYTYLLIVLLLLFLLLILLVVRKRKKRKK 269

Query: 1060 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1107
             L L LFLLL L L     L+ L   +  L   +  PL L  F F+LL
Sbjct: 270  PLALLLFLLLLLLLPFAMFLILLLAPVTALRTLMGYPLVLAFFFFILL 317

This family includes glucosyl transferase II from the Shigella phage SfII, which mediates seroconversion of S. flexneri when the phage is integrated into the host chromosome. Length = 317

>gnl|CDD|222635 pfam14264, Glucos_trans_II, Glucosyl transferase GtrII

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 81/288 (28%), Positives = 112/288 (38%), Gaps = 2/288 (0%)

Query: 853  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 912
             LL  L  +LF   L  + PL L+L +  L L  LL   +   L    + + + LLL   
Sbjct: 31   PLLDLLKRILFGTGLTDLPPLPLILSILFLALSALLLARIF-DLRNKLIAVLIALLLVTS 89

Query: 913  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 972
               L  L + F  L + L  L+  L  L      +  LL  L L L L L    L +F+ 
Sbjct: 90   PFFLENLSYRFDSLEMALAVLLSVLAALFVSKSKIRLLLSALLLALSLGLYQASLNVFIG 149

Query: 973  LFLFLLLLFLLLF-LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1031
            L L LL+L LL     +      +   L L L   L  L++  +      + L     I 
Sbjct: 150  LCLILLILDLLDNKKSIKSLFKKILRSLALLLAGLLLYLIINKVALALFHIELSDYQGIS 209

Query: 1032 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1091
             L L L   L  +   +  F              +LL+ L LL L L+L +         
Sbjct: 210  SLILSLKDLLKSILNNIKEFFSFLKSQSGYPYYTYLLIVLLLLFLLLILLVVRKRKKRKK 269

Query: 1092 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1139
             L L LFLLL L L     L+ L   +  L   +  PL L  F F+LL
Sbjct: 270  PLALLLFLLLLLLLPFAMFLILLLAPVTALRTLMGYPLVLAFFFFILL 317

This family includes glucosyl transferase II from the Shigella phage SfII, which mediates seroconversion of S. flexneri when the phage is integrated into the host chromosome. Length = 317

>gnl|CDD|222635 pfam14264, Glucos_trans_II, Glucosyl transferase GtrII

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 81/288 (28%), Positives = 112/288 (38%), Gaps = 2/288 (0%)

Query: 885  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 944
             LL  L  +LF   L  + PL L+L +  L L  LL   +   L    + + + LLL   
Sbjct: 31   PLLDLLKRILFGTGLTDLPPLPLILSILFLALSALLLARIF-DLRNKLIAVLIALLLVTS 89

Query: 945  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1004
               L  L + F  L + L  L+  L  L      +  LL  L L L L L    L +F+ 
Sbjct: 90   PFFLENLSYRFDSLEMALAVLLSVLAALFVSKSKIRLLLSALLLALSLGLYQASLNVFIG 149

Query: 1005 LFLFLLLLFLLLF-LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1063
            L L LL+L LL     +      +   L L L   L  L++  +      + L     I 
Sbjct: 150  LCLILLILDLLDNKKSIKSLFKKILRSLALLLAGLLLYLIINKVALALFHIELSDYQGIS 209

Query: 1064 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1123
             L L L   L  +   +  F              +LL+ L LL L L+L +         
Sbjct: 210  SLILSLKDLLKSILNNIKEFFSFLKSQSGYPYYTYLLIVLLLLFLLLILLVVRKRKKRKK 269

Query: 1124 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1171
             L L LFLLL L L     L+ L   +  L   +  PL L  F F+LL
Sbjct: 270  PLALLLFLLLLLLLPFAMFLILLLAPVTALRTLMGYPLVLAFFFFILL 317

This family includes glucosyl transferase II from the Shigella phage SfII, which mediates seroconversion of S. flexneri when the phage is integrated into the host chromosome. Length = 317

>gnl|CDD|222635 pfam14264, Glucos_trans_II, Glucosyl transferase GtrII

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 81/288 (28%), Positives = 112/288 (38%), Gaps = 2/288 (0%)

Query: 917  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 976
             LL  L  +LF   L  + PL L+L +  L L  LL   +   L    + + + LLL   
Sbjct: 31   PLLDLLKRILFGTGLTDLPPLPLILSILFLALSALLLARIF-DLRNKLIAVLIALLLVTS 89

Query: 977  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1036
               L  L + F  L + L  L+  L  L      +  LL  L L L L L    L +F+ 
Sbjct: 90   PFFLENLSYRFDSLEMALAVLLSVLAALFVSKSKIRLLLSALLLALSLGLYQASLNVFIG 149

Query: 1037 LFLFLLLLFLLLF-LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1095
            L L LL+L LL     +      +   L L L   L  L++  +      + L     I 
Sbjct: 150  LCLILLILDLLDNKKSIKSLFKKILRSLALLLAGLLLYLIINKVALALFHIELSDYQGIS 209

Query: 1096 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1155
             L L L   L  +   +  F              +LL+ L LL L L+L +         
Sbjct: 210  SLILSLKDLLKSILNNIKEFFSFLKSQSGYPYYTYLLIVLLLLFLLLILLVVRKRKKRKK 269

Query: 1156 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1203
             L L LFLLL L L     L+ L   +  L   +  PL L  F F+LL
Sbjct: 270  PLALLLFLLLLLLLPFAMFLILLLAPVTALRTLMGYPLVLAFFFFILL 317

This family includes glucosyl transferase II from the Shigella phage SfII, which mediates seroconversion of S. flexneri when the phage is integrated into the host chromosome. Length = 317

>gnl|CDD|222635 pfam14264, Glucos_trans_II, Glucosyl transferase GtrII

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 81/288 (28%), Positives = 112/288 (38%), Gaps = 2/288 (0%)

Query: 949  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1008
             LL  L  +LF   L  + PL L+L +  L L  LL   +   L    + + + LLL   
Sbjct: 31   PLLDLLKRILFGTGLTDLPPLPLILSILFLALSALLLARIF-DLRNKLIAVLIALLLVTS 89

Query: 1009 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1068
               L  L + F  L + L  L+  L  L      +  LL  L L L L L    L +F+ 
Sbjct: 90   PFFLENLSYRFDSLEMALAVLLSVLAALFVSKSKIRLLLSALLLALSLGLYQASLNVFIG 149

Query: 1069 LFLFLLLLFLLLF-LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1127
            L L LL+L LL     +      +   L L L   L  L++  +      + L     I 
Sbjct: 150  LCLILLILDLLDNKKSIKSLFKKILRSLALLLAGLLLYLIINKVALALFHIELSDYQGIS 209

Query: 1128 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1187
             L L L   L  +   +  F              +LL+ L LL L L+L +         
Sbjct: 210  SLILSLKDLLKSILNNIKEFFSFLKSQSGYPYYTYLLIVLLLLFLLLILLVVRKRKKRKK 269

Query: 1188 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1235
             L L LFLLL L L     L+ L   +  L   +  PL L  F F+LL
Sbjct: 270  PLALLLFLLLLLLLPFAMFLILLLAPVTALRTLMGYPLVLAFFFFILL 317

This family includes glucosyl transferase II from the Shigella phage SfII, which mediates seroconversion of S. flexneri when the phage is integrated into the host chromosome. Length = 317

>gnl|CDD|222635 pfam14264, Glucos_trans_II, Glucosyl transferase GtrII

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 81/288 (28%), Positives = 112/288 (38%), Gaps = 2/288 (0%)

Query: 981  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1040
             LL  L  +LF   L  + PL L+L +  L L  LL   +   L    + + + LLL   
Sbjct: 31   PLLDLLKRILFGTGLTDLPPLPLILSILFLALSALLLARIF-DLRNKLIAVLIALLLVTS 89

Query: 1041 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1100
               L  L + F  L + L  L+  L  L      +  LL  L L L L L    L +F+ 
Sbjct: 90   PFFLENLSYRFDSLEMALAVLLSVLAALFVSKSKIRLLLSALLLALSLGLYQASLNVFIG 149

Query: 1101 LFLFLLLLFLLLF-LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1159
            L L LL+L LL     +      +   L L L   L  L++  +      + L     I 
Sbjct: 150  LCLILLILDLLDNKKSIKSLFKKILRSLALLLAGLLLYLIINKVALALFHIELSDYQGIS 209

Query: 1160 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1219
             L L L   L  +   +  F              +LL+ L LL L L+L +         
Sbjct: 210  SLILSLKDLLKSILNNIKEFFSFLKSQSGYPYYTYLLIVLLLLFLLLILLVVRKRKKRKK 269

Query: 1220 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1267
             L L LFLLL L L     L+ L   +  L   +  PL L  F F+LL
Sbjct: 270  PLALLLFLLLLLLLPFAMFLILLLAPVTALRTLMGYPLVLAFFFFILL 317

This family includes glucosyl transferase II from the Shigella phage SfII, which mediates seroconversion of S. flexneri when the phage is integrated into the host chromosome. Length = 317

>gnl|CDD|222635 pfam14264, Glucos_trans_II, Glucosyl transferase GtrII

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 81/288 (28%), Positives = 112/288 (38%), Gaps = 2/288 (0%)

Query: 1013 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1072
             LL  L  +LF   L  + PL L+L +  L L  LL   +   L    + + + LLL   
Sbjct: 31   PLLDLLKRILFGTGLTDLPPLPLILSILFLALSALLLARIF-DLRNKLIAVLIALLLVTS 89

Query: 1073 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1132
               L  L + F  L + L  L+  L  L      +  LL  L L L L L    L +F+ 
Sbjct: 90   PFFLENLSYRFDSLEMALAVLLSVLAALFVSKSKIRLLLSALLLALSLGLYQASLNVFIG 149

Query: 1133 LFLFLLLLFLLLF-LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1191
            L L LL+L LL     +      +   L L L   L  L++  +      + L     I 
Sbjct: 150  LCLILLILDLLDNKKSIKSLFKKILRSLALLLAGLLLYLIINKVALALFHIELSDYQGIS 209

Query: 1192 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1251
             L L L   L  +   +  F              +LL+ L LL L L+L +         
Sbjct: 210  SLILSLKDLLKSILNNIKEFFSFLKSQSGYPYYTYLLIVLLLLFLLLILLVVRKRKKRKK 269

Query: 1252 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1299
             L L LFLLL L L     L+ L   +  L   +  PL L  F F+LL
Sbjct: 270  PLALLLFLLLLLLLPFAMFLILLLAPVTALRTLMGYPLVLAFFFFILL 317

This family includes glucosyl transferase II from the Shigella phage SfII, which mediates seroconversion of S. flexneri when the phage is integrated into the host chromosome. Length = 317

>gnl|CDD|222635 pfam14264, Glucos_trans_II, Glucosyl transferase GtrII

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 81/288 (28%), Positives = 112/288 (38%), Gaps = 2/288 (0%)

Query: 1045 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1104
             LL  L  +LF   L  + PL L+L +  L L  LL   +   L    + + + LLL   
Sbjct: 31   PLLDLLKRILFGTGLTDLPPLPLILSILFLALSALLLARIF-DLRNKLIAVLIALLLVTS 89

Query: 1105 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1164
               L  L + F  L + L  L+  L  L      +  LL  L L L L L    L +F+ 
Sbjct: 90   PFFLENLSYRFDSLEMALAVLLSVLAALFVSKSKIRLLLSALLLALSLGLYQASLNVFIG 149

Query: 1165 LFLFLLLLFLLLF-LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1223
            L L LL+L LL     +      +   L L L   L  L++  +      + L     I 
Sbjct: 150  LCLILLILDLLDNKKSIKSLFKKILRSLALLLAGLLLYLIINKVALALFHIELSDYQGIS 209

Query: 1224 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1283
             L L L   L  +   +  F              +LL+ L LL L L+L +         
Sbjct: 210  SLILSLKDLLKSILNNIKEFFSFLKSQSGYPYYTYLLIVLLLLFLLLILLVVRKRKKRKK 269

Query: 1284 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1331
             L L LFLLL L L     L+ L   +  L   +  PL L  F F+LL
Sbjct: 270  PLALLLFLLLLLLLPFAMFLILLLAPVTALRTLMGYPLVLAFFFFILL 317

This family includes glucosyl transferase II from the Shigella phage SfII, which mediates seroconversion of S. flexneri when the phage is integrated into the host chromosome. Length = 317

>gnl|CDD|226828 COG4393, COG4393, Predicted membrane protein [Function unknown]

 Score = 43.7 bits (103), Expect = 5e-04
 Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 11/214 (5%)

Query: 1141 FLLLFLFLLLFLLLLFLILPLFLLLF-LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1199
            FL   L L L L + +   P+F   F ++L  LF     F+  +      ++     +F+
Sbjct: 8    FLQSVLPLALLLGITWNKKPIFKSFFVVWLGFLFGYFGFFIAAYFPKSQNLILNLDFVFI 67

Query: 1200 FLLLLFLLLFLFLLLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLL---LFLLLLFLI 1254
              LLLF +   +  + LL  +L+L  F   L + F+  LF +    ++     L L  ++
Sbjct: 68   GSLLLFFISQFWKKIELLNFWLLLLSFCAALHWGFMPNLFAIFGTDVINTDSLLRLGAIL 127

Query: 1255 LPLFLLLFLFLLLLFLLLFL-----FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1309
            L L  ++ + L L  +   L      LL  L+ L L  P      L L+ L  L     L
Sbjct: 128  LALLTIILIALSLQKVYFQLKSSLAPLLALLIYLILSFPFSARGVLALMRLRFLKLTKSL 187

Query: 1310 LFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLS 1343
            +  +  F     F +  LF +L  +FLL LF  S
Sbjct: 188  VSFVAKFENKSTFYIYILFTILAIIFLLFLFKDS 221

Length = 405

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 40/174 (22%), Positives = 56/174 (32%), Gaps = 23/174 (13%)

Query: 781 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 840
               L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36  AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 841 LFLLLFLFLLLLFLLLFLFLLLFLLL---------------------LFLILPLFLLLFL 879
             L+L +  LL  +L   FL     L                     L  +L   L + L
Sbjct: 96  FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVL 155

Query: 880 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 933
             L+ + +L   L   L L          L +F+ LL  LL   LLL L++   
Sbjct: 156 VGLVAYFVLKNHLSELLSLAG--QSPVAALSIFMELLGKLLLAVLLLLLIVAAF 207

Length = 363

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 40/174 (22%), Positives = 56/174 (32%), Gaps = 23/174 (13%)

Query: 877  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 936
                L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36   AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 937  LFLLLFLFLLLLFLLLFLFLLLFLLL---------------------LFLILPLFLLLFL 975
              L+L +  LL  +L   FL     L                     L  +L   L + L
Sbjct: 96   FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVL 155

Query: 976  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1029
              L+ + +L   L   L L          L +F+ LL  LL   LLL L++   
Sbjct: 156  VGLVAYFVLKNHLSELLSLAG--QSPVAALSIFMELLGKLLLAVLLLLLIVAAF 207

Length = 363

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 40/174 (22%), Positives = 56/174 (32%), Gaps = 23/174 (13%)

Query: 973  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1032
                L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36   AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 1033 LFLLLFLFLLLLFLLLFLFLLLFLLL---------------------LFLILPLFLLLFL 1071
              L+L +  LL  +L   FL     L                     L  +L   L + L
Sbjct: 96   FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVL 155

Query: 1072 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1125
              L+ + +L   L   L L          L +F+ LL  LL   LLL L++   
Sbjct: 156  VGLVAYFVLKNHLSELLSLAG--QSPVAALSIFMELLGKLLLAVLLLLLIVAAF 207

Length = 363

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 40/174 (22%), Positives = 56/174 (32%), Gaps = 23/174 (13%)

Query: 1069 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1128
                L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36   AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 1129 LFLLLFLFLLLLFLLLFLFLLLFLLL---------------------LFLILPLFLLLFL 1167
              L+L +  LL  +L   FL     L                     L  +L   L + L
Sbjct: 96   FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVL 155

Query: 1168 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1221
              L+ + +L   L   L L          L +F+ LL  LL   LLL L++   
Sbjct: 156  VGLVAYFVLKNHLSELLSLAG--QSPVAALSIFMELLGKLLLAVLLLLLIVAAF 207

Length = 363

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 43.8 bits (104), Expect = 5e-04
 Identities = 40/174 (22%), Positives = 56/174 (32%), Gaps = 23/174 (13%)

Query: 1165 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1224
                L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36   AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 1225 LFLLLFLFLLLLFLLLFLFLLLFLLL---------------------LFLILPLFLLLFL 1263
              L+L +  LL  +L   FL     L                     L  +L   L + L
Sbjct: 96   FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVL 155

Query: 1264 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1317
              L+ + +L   L   L L          L +F+ LL  LL   LLL L++   
Sbjct: 156  VGLVAYFVLKNHLSELLSLAG--QSPVAALSIFMELLGKLLLAVLLLLLIVAAF 207

Length = 363

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 43.9 bits (104), Expect = 6e-04
 Identities = 89/358 (24%), Positives = 126/358 (35%), Gaps = 37/358 (10%)

Query: 911  LFLLLLFLLLFLFLLLFLLLLFLILPLFLL----LFLFLL--------LLFLLLFLFLLL 958
            LF  + F LL L   + L    L+    +L    L   L+        LL    FL  L 
Sbjct: 236  LFSSITFALLLLVGGMRLFSARLLRGPSVLSPSYLKRLLVALASTVGPLLADSQFLTPLA 295

Query: 959  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1018
             LL +   LPL L               +L L L LL     +  LL   L        L
Sbjct: 296  ILLSILNALPLDLA--------------WLALGLFLLLAFFFIARLLGAALTPTAPSWRL 341

Query: 1019 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL-LFLFLLLLF 1077
            F++      FL+ P    + L   L+  L  +  LL   L+  +    L    +  L + 
Sbjct: 342  FMVCDRFAHFLM-PREQAMALRRGLVRSLGAINPLLGAPLVLTVADDGLASDVIGQLGII 400

Query: 1078 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1137
              L    LL   L       +  L L  +L    L L +      L+        LFL L
Sbjct: 401  AALLAPALLVARLKDAAWRAYPRLLLITVLSAAPLALIVAALTGYLYTA------LFLAL 454

Query: 1138 LLLFLLLFLFLLLFLLLLFLILPL-FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1196
             L+  +  LF    L +L  +      L F   L    L     L+ + L  + L L  L
Sbjct: 455  RLVVTVAILFTWYVLYILRGLSVSARRLAFARALAGRALAEEAELVEVALDQIGLQLLRL 514

Query: 1197 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1254
            + L LLL+ + L L++    L    I     L     +L    + L  LL  +LLFLI
Sbjct: 515  IRLLLLLIAIPLVLYVWGSYLE--DITLWAYLGTTGGVLGVESITLGALLQAVLLFLI 570

Length = 835

>gnl|CDD|226122 COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]

 Score = 43.5 bits (103), Expect = 6e-04
 Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 3/237 (1%)

Query: 779  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 838
            L++      L   +  FLL        +  +     L+ L++    FL LL    L++ +
Sbjct: 74   LIVPYIFFFLIYSILYFLLRKFNSELTLNFILPGWELWFLVILFFWFLPLLFITKLIYNL 133

Query: 839  LPLFLLLFLFLLLLFLLLFLFLLLFLL---LLFLILPLFLLLFLFLLLLFLLLFLFLLLF 895
            + ++L + + L++L L+ F F+ L L       +  P FLL  LF  L F    L     
Sbjct: 134  IAVWLAVSVSLIILILVGFFFIPLSLGSFSRTLVFFPFFLLGTLFAKLHFWFGGLLRTYK 193

Query: 896  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 955
             L + +   L  ++FL + L F   +L   +       I    LL  L L L    L  F
Sbjct: 194  GLRVNIKSFLAAVIFLAVGLAFNYSWLLGSMPYSSFGNIFVGGLLRALVLGLALNALVRF 253

Query: 956  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1012
                  L  L+  L        LL   +  +  L F +L      L  L  L ++ L
Sbjct: 254  AAKIPQLRKLVTKLGKNTLYIYLLHGFVFKVLRLQFGILNLSTSYLAFLPILLIVSL 310

Length = 343

>gnl|CDD|217721 pfam03772, Competence, Competence protein

 Score = 43.0 bits (102), Expect = 6e-04
 Identities = 78/243 (32%), Positives = 95/243 (39%), Gaps = 23/243 (9%)

Query: 775 AISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL---------FLLLF 825
           AIS L + L   L+ LLL   LL         L   L L L+ LL           ++L 
Sbjct: 27  AISGLHVGLVAGLVLLLLRRLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLL 86

Query: 826 LFLLLFLLLLFLILPLFLLLFLFLLLL--------------FLLLFLFLLLFLLLLFLIL 871
           L LL  LL   +     L L   LLLL              FL +   LLL   L   + 
Sbjct: 87  LVLLALLLGRRISPLDSLALAALLLLLIDPLALLSAGFQLSFLAVAGLLLLAPRLQKRLS 146

Query: 872 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 931
            L   L   LLL+ L   L  L  LL  F    L  LL   L +  +   +  L  L LL
Sbjct: 147 RLSPRLLALLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALL 206

Query: 932 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 991
             + P    L L+L    L L L LL +L  L           L+LLLL+ LL L LLL 
Sbjct: 207 LSLFPPLAALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLLLLLLLLL 266

Query: 992 LLL 994
           LL 
Sbjct: 267 LLR 269

Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site. Length = 270

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 43.8 bits (103), Expect = 6e-04
 Identities = 44/133 (33%), Positives = 64/133 (48%)

Query: 774 DAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 833
            A+   L     +LL   L L LLL LL L  I+P  LL+ L  LL  LL  + L  FLL
Sbjct: 295 PALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLLANVILAAFLL 354

Query: 834 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 893
           +L +   L L   L L +  +      L+  L+++L++ L + L L +  L L+L L LL
Sbjct: 355 ILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIWPLILILNLTLL 414

Query: 894 LFLLLLFLILPLF 906
             +    L L + 
Sbjct: 415 KTVSWRTLNLVVE 427

Length = 439

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 43.4 bits (103), Expect = 7e-04
 Identities = 60/288 (20%), Positives = 108/288 (37%), Gaps = 31/288 (10%)

Query: 814  FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 873
               LL      F    + L L  +   L +LL + ++ L L++  F          ++  
Sbjct: 4    IFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFLMRH 63

Query: 874  FLLLFLFLLLLFLLLFLFLLLFLLLL-----------------------FLILPLFLLLF 910
              +  + + +L L+L L L+  L  L                       F   P  L L 
Sbjct: 64   KGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNLFLL 123

Query: 911  LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 970
            LF+  L+ L      LF  ++ ++L     L L+  +  +       + L L  L+L L 
Sbjct: 124  LFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALS 183

Query: 971  LLLFLFLLLLFLLLFLFLLLFLLLLFL-ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1029
              + +     ++L F+ L LFL  +      L   + L +LL  LL   + +    ++F+
Sbjct: 184  PYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAIIFV 243

Query: 1030 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1077
            I        +F++L   LL       +L   L++ +FLL F     + 
Sbjct: 244  IA-------IFIVLFLQLLLENQKKKILKFTLVVLIFLLSFGITYSIL 284

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 43.4 bits (103), Expect = 7e-04
 Identities = 60/288 (20%), Positives = 108/288 (37%), Gaps = 31/288 (10%)

Query: 846  FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 905
               LL      F    + L L  +   L +LL + ++ L L++  F          ++  
Sbjct: 4    IFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFLMRH 63

Query: 906  FLLLFLFLLLLFLLLFLFLLLFLLLL-----------------------FLILPLFLLLF 942
              +  + + +L L+L L L+  L  L                       F   P  L L 
Sbjct: 64   KGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNLFLL 123

Query: 943  LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1002
            LF+  L+ L      LF  ++ ++L     L L+  +  +       + L L  L+L L 
Sbjct: 124  LFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALS 183

Query: 1003 LLLFLFLLLLFLLLFLFLLLFLLLLFL-ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1061
              + +     ++L F+ L LFL  +      L   + L +LL  LL   + +    ++F+
Sbjct: 184  PYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAIIFV 243

Query: 1062 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1109
            I        +F++L   LL       +L   L++ +FLL F     + 
Sbjct: 244  IA-------IFIVLFLQLLLENQKKKILKFTLVVLIFLLSFGITYSIL 284

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 43.6 bits (103), Expect = 7e-04
 Identities = 59/174 (33%), Positives = 72/174 (41%), Gaps = 17/174 (9%)

Query: 1181 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1240
            LL  LL +L   L LL  L LLL  LL    LLL LL+  +I  L   L   L LL LLL
Sbjct: 3    LLRRLLKYLKYKLLLLAILLLLLSALLS---LLLPLLIGRIIDALLADLGELLELLLLLL 59

Query: 1241 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP------------ 1288
             L LL  +L          L    +  L   LF  LL   L  F                
Sbjct: 60   LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDV 119

Query: 1289 --LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLF 1340
              +  L+   L+L+F  + L +   +LL  L   L L+L L L LL L L LL 
Sbjct: 120  EAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182)

 Score = 43.3 bits (103), Expect = 9e-04
 Identities = 61/250 (24%), Positives = 91/250 (36%), Gaps = 56/250 (22%)

Query: 778 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 837
            L      LL+FL+ FLFL L LLL +   P F+ L        L  +  ++L    L L
Sbjct: 45  LLTRIGLFLLVFLIFFLFLFLNLLLAYRARPPFVPLSPEQFGDPLARYRSVILPRRRLLL 104

Query: 838 ILPLFLLLFLFLLLLF-----LLLFLF--------LLLFLLLLFLI--LPLFLLLFLFLL 882
           +    +L  L  L        +LLFL          +    + F +  LP   LL  +LL
Sbjct: 105 LGISLVLGLLAGLSASSRWETVLLFLNAVPFGTTDPIFGKDIGFYLFSLPFLELLLSWLL 164

Query: 883 LLFLLLFLFLLLFLLL--------LFLILP------LFLLLFLFLLLL--------FLLL 920
            L LL  +  LL   L         F  L       L +LL LF LL         + LL
Sbjct: 165 ALLLLALIATLLTYYLYGGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLDRYELL 224

Query: 921 F-----------------LFLLLFLLLLFLILPLFLLLFLFL--LLLFLLLFLFLLLFLL 961
           +                 L   L L ++ L++ +     +F     L  +    L++  +
Sbjct: 225 YSGRGVVTGAGYTDVHAVLPAYLILAVIALLVAVLFFANIFRRKWRLPAIALALLVVLAI 284

Query: 962 LLFLILPLFL 971
           LL  + P  +
Sbjct: 285 LLGGVYPALV 294

This family contains uncharacterized integral membrane proteins. Length = 771

>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family

 Score = 42.9 bits (101), Expect = 9e-04
 Identities = 104/294 (35%), Positives = 131/294 (44%)

Query: 792  LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 851
            L L LL  + L    +PLF  +  +LL L       L  FL    L L +  L +  L  
Sbjct: 33   LLLALLFLVFLGRFAVPLFFFISGYLLALSRSRRRSLFKFLKKRLLRLLIPYLFWSLLYF 92

Query: 852  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 911
            L  LL   L ++ LLL L+L   L        L+ L  LF+   LL L L L   L   L
Sbjct: 93   LLGLLVGGLSVYGLLLLLLLLGLLFGGGPNGHLWFLPALFVFYLLLPLLLRLLRKLKKLL 152

Query: 912  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 971
             LLLL LLL L LL  L+LL  + P  L L + LL  FLL  L       +    L L +
Sbjct: 153  LLLLLALLLLLSLLYILILLVGLPPTVLNLLIGLLPFFLLGALLARYRKRIRSKRLLLLI 212

Query: 972  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1031
            ++ L L LL L+L L  L  L+ L   L  +  L L LL + LLL L LLL  L     L
Sbjct: 213  VILLALALLALILLLLFLFGLVYLAPELYGYFSLLLLLLGVLLLLLLALLLANLRSLKRL 272

Query: 1032 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1085
              +L  +   + L     L LL  LLLL   L   LL  L L+L  L+  L   
Sbjct: 273  LKYLGKYSLGIYLIHPPILLLLTKLLLLLPPLGPILLFLLALVLTLLVSLLLAR 326

This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long. Length = 326

>gnl|CDD|222703 pfam14351, DUF4401, Domain of unknown function (DUF4401)

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 67/209 (32%), Positives = 83/209 (39%), Gaps = 3/209 (1%)

Query: 1138 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1197
            L L   L L   L       ++   +L+ + + LL  L  LFL    L L L   L L  
Sbjct: 17   LFLLGFLALAFNLVFDEGGALVVGLILIAIAVALLRKLPSLFLRQLALALSLAGQLLLAF 76

Query: 1198 FLFLLLL---FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1254
             LF LL       L L  L+  LL FL+    L        +  LL L   L L  L  +
Sbjct: 77   GLFDLLDESVLAALLLLALILALLYFLMPDRLLRFLSAAAGVLALLGLLAELLLSGLAYL 136

Query: 1255 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1314
            L     L L  L +FLLL L L        L+ PL   L L LL L L+L    L+    
Sbjct: 137  LLPLAPLLLVALFVFLLLNLILGRLRRRHALLEPLAYGLLLSLLALLLVLSGNSLILGAP 196

Query: 1315 LFLILPLFLLLFLFLLLLFLFLLLLFLLS 1343
             FL   L  LL L LL+    LL+  L  
Sbjct: 197  FFLASWLKALLLLLLLVGLALLLISILWR 225

This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important. Length = 321

>gnl|CDD|222703 pfam14351, DUF4401, Domain of unknown function (DUF4401)

 Score = 42.2 bits (100), Expect = 0.001
 Identities = 81/244 (33%), Positives = 100/244 (40%), Gaps = 7/244 (2%)

Query: 1106 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1165
            L L   L L   L       ++   +L+ + + LL  L  LFL    L L L   L L  
Sbjct: 17   LFLLGFLALAFNLVFDEGGALVVGLILIAIAVALLRKLPSLFLRQLALALSLAGQLLLAF 76

Query: 1166 FLFLLLL--FLLLFLFLLLFLLLLFLILPLFLLLFLFL-LLLFLLLFLFLLLFLLLLFLI 1222
             LF LL    L   L L L L LL+ ++P  LL FL     +  LL L   L L  L  +
Sbjct: 77   GLFDLLDESVLAALLLLALILALLYFLMPDRLLRFLSAAAGVLALLGLLAELLLSGLAYL 136

Query: 1223 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1282
            L     L L  L +FLLL L L        L+ PL   L L LL L L+L    L+    
Sbjct: 137  LLPLAPLLLVALFVFLLLNLILGRLRRRHALLEPLAYGLLLSLLALLLVLSGNSLILGAP 196

Query: 1283 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL----FLILPLFLLLFLFLLLLFLFLLL 1338
             FL   L  LL L LL+   LL + +L             + L  LL L LL L    L 
Sbjct: 197  FFLASWLKALLLLLLLVGLALLLISILWRRRQPLTSKLQAVVLLALLLLALLSLPAPGLG 256

Query: 1339 LFLL 1342
              LL
Sbjct: 257  AALL 260

This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important. Length = 321

>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General function prediction only]

 Score = 42.9 bits (101), Expect = 0.001
 Identities = 117/404 (28%), Positives = 152/404 (37%), Gaps = 3/404 (0%)

Query: 945  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1004
            +    L   L   +  LLL  IL   LL +L LLL  LLL L LLL   L    L L LL
Sbjct: 1    MSGTRLSRLLLRFVAALLLLGILLALLLSWLPLLLAALLLLLALLLARALPLSKLLLVLL 60

Query: 1005 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1064
            L  FLL +F  LFL LL   L +         + + L+      +   L         L 
Sbjct: 61   LAFFLLGIFAALFLLLLSLALYISGGTIALNFVIIDLISGDTDRYRLSLGRGQGRNDQLK 120

Query: 1065 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1124
            L L L      +  L     +   L L L     L L  F L  +L       L  +   
Sbjct: 121  LRLSLEREKEAVGALGGALWINETLKLELP-QGALNLGGFDLEAYLGAQGIGALGTVFQA 179

Query: 1125 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1184
             I+   L  FL   +  L+  L  LL L  L  +L   LL  L  L   L      L   
Sbjct: 180  AIISRSLPRFLRSRIRRLVAQLLYLLLLGPLGGLLLALLLGELSGLFKELWEAFRALGLA 239

Query: 1185 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1244
             LL +      LL    L L   L  ++   L LL  +L LF  +        L   + L
Sbjct: 240  HLLAISGLHVALLAGTFLFLLRRLGRWIGPALPLLLGLLALFYAILTGFSPSVLRALVML 299

Query: 1245 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1304
             L LL    +  L  +  L L  + +LL   L +  L  +L       L L+  L  LL 
Sbjct: 300  ALALLASLSLRNLSSIFILLLSAIAILLLAPLAILSLGFWLSFLAVAALILWSQLFRLLG 359

Query: 1305 FLFLLLFLLLLFLILPLFLLLF--LFLLLLFLFLLLLFLLSSFS 1346
              + L   L L   LPL +L F  L LL L L L++  L+S  S
Sbjct: 360  LSWPLPITLALLATLPLLILQFGRLGLLGLLLNLIVSPLISLIS 403

Length = 453

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 91/282 (32%), Positives = 106/282 (37%), Gaps = 1/282 (0%)

Query: 775  AISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 834
             +    L   LL     L+L L+   LL      L+      +   F        L L  
Sbjct: 70   GLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFS 129

Query: 835  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 894
                L   L   L  LL   L + +L L L +L L+L L LL  L LLLL  L F  L  
Sbjct: 130  AGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFFLLSF 189

Query: 895  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLL-LFLLLLFLILPLFLLLFLFLLLLFLLLF 953
                L   LPL+L   L L      L L L  L  +L  L+  L         LL L+  
Sbjct: 190  GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGL 249

Query: 954  LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1013
            L   L LLLL L   L LLL   LLL F L F F  L  L   L  P        L   F
Sbjct: 250  LLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTF 309

Query: 1014 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1055
              L   L   L  L L    +  +FL L  L LL  L LLL 
Sbjct: 310  GSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 62/289 (21%), Positives = 113/289 (39%), Gaps = 31/289 (10%)

Query: 1102 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1161
               LL      F    + L L  +   L +LL + ++ L L++  F          ++  
Sbjct: 4    IFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFLMRH 63

Query: 1162 FLLLFLFLLLLFLLLFLFLLLFLLLL-----------------------FLILPLFLLLF 1198
              +  + + +L L+L L L+  L  L                       F   P  L L 
Sbjct: 64   KGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNLFLL 123

Query: 1199 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 1258
            LF+  L+ L      LF  ++ ++L     L L+  +  +       + L L  L+L L 
Sbjct: 124  LFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALS 183

Query: 1259 LLLFLFL----LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1314
              + +      +L F+ LFLFL   +     +     L  L  +LL +  F+     + +
Sbjct: 184  PYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAIIFV 243

Query: 1315 LFLILPLFLLLFLFL----LLLFLFLLLLFLLSSFSSSSSSSFSYSSSS 1359
            + + + LFL L L      +L F  ++L+FLLS   + S  +++ S+ +
Sbjct: 244  IAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSFGITYSILNYAISNQT 292

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 52/206 (25%), Positives = 73/206 (35%), Gaps = 14/206 (6%)

Query: 1143 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1202
            LL    L  LL L       L    F L    LL L  LL+LLL        L+ FL+  
Sbjct: 1    LLLRGWLRLLLALLAGALGTLAFAPFDLWPLALLSLAGLLWLLLGASPKQAALIGFLWGF 60

Query: 1203 LLFLLLFLFL---LLFLLLLFLILPLFLLLFLFLLL-LFLLLFLFLLLFLLLLFLILPLF 1258
              F     ++   +     +   L   L+L L   L L+  LF  L   L     +    
Sbjct: 61   GYFGSGLSWIYVSIHTFGGMPAWLAPLLVLLLAAYLALYPALFAALWRRLWPKSGLRRAL 120

Query: 1259 LLLFLFLLLLFLLLFLFL----------LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1308
             L  L++L  +L  +L             +    L  + P+F +  L  L++ +   L L
Sbjct: 121  ALPALWVLTEWLRGWLLTGFPWLALGYSQIPDGPLAQLAPIFGVYGLSFLVVLVNALLAL 180

Query: 1309 LLFLLLLFLILPLFLLLFLFLLLLFL 1334
             L      L L   LLL L  L   L
Sbjct: 181  ALIKRRWRLALLALLLLLLAALGYGL 206

Length = 505

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 42.8 bits (101), Expect = 0.001
 Identities = 78/366 (21%), Positives = 127/366 (34%), Gaps = 16/366 (4%)

Query: 778  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 837
            FL  +L+LL   + L    +     L  + P   LL +  LL+ L+    + L  LL   
Sbjct: 92   FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLR 151

Query: 838  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 897
             +     +   + +L +++ L  ++  L  F      L              L  +L   
Sbjct: 152  GIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAF 211

Query: 898  LLFLILPLFLLL---------FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 948
              F        L          +   ++  LL + +L  L  L ++  L           
Sbjct: 212  FAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPS 271

Query: 949  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL--LLF 1006
              L    L        +I+ +  LL LF  LL  +L +  +L+ +    +LP F   +  
Sbjct: 272  APLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNP 331

Query: 1007 LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI---- 1062
                 +  L+   ++  +LLL   L       L  L     L  +LL+ L LL L     
Sbjct: 332  KGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKP 391

Query: 1063 -LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1121
             L     L L  L+  L +   LLL   L    LP  LL  + +    ++  L  L    
Sbjct: 392  DLKRPFRLPLAPLIPILGIVAVLLLLYALYASGLPPLLLGVILIAGGIIIYLLVYLGLGR 451

Query: 1122 LLFLIL 1127
            LL  IL
Sbjct: 452  LLSAIL 457

Length = 466

>gnl|CDD|226122 COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 69/297 (23%), Positives = 110/297 (37%), Gaps = 18/297 (6%)

Query: 795  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL---------------LLFLLLLFLIL 839
             L++F  +L  I P   +L+ F+    + LF F+                +      LI+
Sbjct: 17   LLVVFGHILQPISPWLSVLYKFIYSFHMPLFFFISGYFYKTEKRAKSTQYVKKKARTLIV 76

Query: 840  PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 899
            P      ++ +L FLL      L L  +     L+ L+ LF   L LL    L+  L+ +
Sbjct: 77   PYIFFFLIYSILYFLLRKFNSELTLNFILPGWELWFLVILFFWFLPLLFITKLIYNLIAV 136

Query: 900  FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 959
            +L + + L++ + +   F+ L    L       +  P FLL  LF  L F    L     
Sbjct: 137  WLAVSVSLIILILVGFFFIPLS---LGSFSRTLVFFPFFLLGTLFAKLHFWFGGLLRTYK 193

Query: 960  LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1019
             L + +   L  ++FL + L F   +L   +       I    LL  L L L    L  F
Sbjct: 194  GLRVNIKSFLAAVIFLAVGLAFNYSWLLGSMPYSSFGNIFVGGLLRALVLGLALNALVRF 253

Query: 1020 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1076
                  L  L+  L        LL   +  +  L F +L      L  L  L ++ L
Sbjct: 254  AAKIPQLRKLVTKLGKNTLYIYLLHGFVFKVLRLQFGILNLSTSYLAFLPILLIVSL 310

Length = 343

>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function unknown]

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 45/199 (22%), Positives = 68/199 (34%), Gaps = 11/199 (5%)

Query: 865  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLF---LLLLFLILPLFLLLFLFLLLLFLLLF 921
             L+ L++P  L + +FL  + LL           L LL  I+PL L+    L    L   
Sbjct: 7    WLVRLLVPQILAILVFLSGVILLFSGATPSLDERLRLLPRIVPLPLIEASHLTASLLGAL 66

Query: 922  LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 981
            L LL   L   L       L + +L L L L   L        ++  + +LL       +
Sbjct: 67   LLLLARGLRKRLKRAWIAALIVLILGLVLSLAKGLAWI--EAAVLFLIAVLLLAGRRAFY 124

Query: 982  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF---LILPLFL--L 1036
                L +            + L      L  F    +     L   F      P FL  L
Sbjct: 125  RKSLLLVQSISPGWLAAFIVALAAA-NWLGGFAYADVEYSNDLWWEFPFTGSAPRFLRAL 183

Query: 1037 LFLFLLLLFLLLFLFLLLF 1055
            L +F+ L+ L ++  L   
Sbjct: 184  LGVFIALIALGIWALLRPR 202

Length = 538

>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 90/251 (35%), Positives = 112/251 (44%), Gaps = 1/251 (0%)

Query: 775  AISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 834
             +  L+ +LF  LL+ LL L +    +   L+L L L L         L FL  L    L
Sbjct: 77   LLRLLIPYLFWSLLYFLLGLLVGGLSVYGLLLLLLLLGLLFGGGPNGHLWFLPALFVFYL 136

Query: 835  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 894
            L  +L L LL  L  LLL LLL L LLL LL + ++L       L LL+  L  FL   L
Sbjct: 137  LLPLL-LRLLRKLKKLLLLLLLALLLLLSLLYILILLVGLPPTVLNLLIGLLPFFLLGAL 195

Query: 895  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 954
                   I    LLL + +LL   LL L LLL  L   + L   L  +  LLLL L + L
Sbjct: 196  LARYRKRIRSKRLLLLIVILLALALLALILLLLFLFGLVYLAPELYGYFSLLLLLLGVLL 255

Query: 955  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1014
             LLL LLL  L     LL +L    L + L    +L LL   L+L   L   L  LL  +
Sbjct: 256  LLLLALLLANLRSLKRLLKYLGKYSLGIYLIHPPILLLLTKLLLLLPPLGPILLFLLALV 315

Query: 1015 LLFLFLLLFLL 1025
            L  L  LL   
Sbjct: 316  LTLLVSLLLAR 326

This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long. Length = 326

>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 114/317 (35%), Positives = 142/317 (44%), Gaps = 3/317 (0%)

Query: 1019 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1078
              +L ++   ++L      F   LLL LL  +FL  F + LF  +  +LL         L
Sbjct: 10   IAILLVVFGHVLLAYGSGPFGLPLLLALLFLVFLGRFAVPLFFFISGYLLALSRSRRRSL 69

Query: 1079 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1138
              FL   L  LL+  +    L   L LL+  L ++  LLL LLL  L          FL 
Sbjct: 70   FKFLKKRLLRLLIPYLFWSLLYFLLGLLVGGLSVYGLLLLLLLLGLLFGGGPNGHLWFLP 129

Query: 1139 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1198
             LF+   L  LL  LL  L   L LLL   LLLL LL  L LL+ L    L L + LL F
Sbjct: 130  ALFVFYLLLPLLLRLLRKLKKLLLLLLLALLLLLSLLYILILLVGLPPTVLNLLIGLLPF 189

Query: 1199 LFL-LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1257
              L  LL           LLLL +IL    LL L LLLLFL   ++L   L   F +L L
Sbjct: 190  FLLGALLARYRKRIRSKRLLLLIVILLALALLALILLLLFLFGLVYLAPELYGYFSLLLL 249

Query: 1258 FLLLFLFLLLLFLLLFLFLLLFLLLLF--LILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1315
             L + L LLL  LL  L  L  LL       L ++L+    LLLL  LL L   L  +LL
Sbjct: 250  LLGVLLLLLLALLLANLRSLKRLLKYLGKYSLGIYLIHPPILLLLTKLLLLLPPLGPILL 309

Query: 1316 FLILPLFLLLFLFLLLL 1332
            FL+  +  LL   LL  
Sbjct: 310  FLLALVLTLLVSLLLAR 326

This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long. Length = 326

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 43.2 bits (102), Expect = 0.001
 Identities = 49/163 (30%), Positives = 67/163 (41%)

Query: 776 ISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 835
           + + LL L +LLL L   L LLL LL+  +I  L   L   L LL LLL L LL  +L  
Sbjct: 11  LKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRA 70

Query: 836 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 895
                   L    +  L   LF  LL   L  F       L+      +  +  L   + 
Sbjct: 71  LQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVL 130

Query: 896 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 938
           +L+   IL L   L L   L + L  + LL+  LL  ++  L 
Sbjct: 131 VLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173

Length = 567

>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 43.2 bits (103), Expect = 0.001
 Identities = 48/208 (23%), Positives = 70/208 (33%), Gaps = 13/208 (6%)

Query: 776 ISFLLLFLFLLLLFLL------LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 829
           ++F + FLF     L       L  + +     L  +  L       L  + LLLF+ + 
Sbjct: 373 LNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIF 432

Query: 830 LFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 889
              +L +LI P   ++ L   L  L LF+ LL   L   L L         L    L  F
Sbjct: 433 GGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSF 492

Query: 890 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 949
           L  + F+       P      +    L L                    L  FL  L   
Sbjct: 493 LGSMWFM-------PFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKL 545

Query: 950 LLLFLFLLLFLLLLFLILPLFLLLFLFL 977
           +       L + LL  +L + +LL LFL
Sbjct: 546 IQWLQNNNLKIYLLSFLLWMIILLLLFL 573

Length = 573

>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 43.2 bits (103), Expect = 0.001
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 6/211 (2%)

Query: 805  LILPLFLLLFLFLLLLFLLLFLFLLL----FLLLLFLILPLFLLLFLFLLLLFLLLFLFL 860
            LIL +  +  L   + FL  F   L     F L+ + +   F L  L  L       L  
Sbjct: 363  LILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKS 422

Query: 861  LLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 918
            ++ LL + +     L  L+F    ++ L  +L LL   ++L      + L  + L     
Sbjct: 423  MILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482

Query: 919  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 978
             L  + L   L     +P      +    L L                    L  FL  L
Sbjct: 483  SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKL 542

Query: 979  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1009
               +       L + LL  +L + +LL LFL
Sbjct: 543  SKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573

Length = 573

>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 43.2 bits (103), Expect = 0.001
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 6/211 (2%)

Query: 837  LILPLFLLLFLFLLLLFLLLFLFLLL----FLLLLFLILPLFLLLFLFLLLLFLLLFLFL 892
            LIL +  +  L   + FL  F   L     F L+ + +   F L  L  L       L  
Sbjct: 363  LILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKS 422

Query: 893  LLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 950
            ++ LL + +     L  L+F    ++ L  +L LL   ++L      + L  + L     
Sbjct: 423  MILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482

Query: 951  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1010
             L  + L   L     +P      +    L L                    L  FL  L
Sbjct: 483  SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKL 542

Query: 1011 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1041
               +       L + LL  +L + +LL LFL
Sbjct: 543  SKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573

Length = 573

>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 43.2 bits (103), Expect = 0.001
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 6/211 (2%)

Query: 869  LILPLFLLLFLFLLLLFLLLFLFLLL----FLLLLFLILPLFLLLFLFLLLLFLLLFLFL 924
            LIL +  +  L   + FL  F   L     F L+ + +   F L  L  L       L  
Sbjct: 363  LILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKS 422

Query: 925  LLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 982
            ++ LL + +     L  L+F    ++ L  +L LL   ++L      + L  + L     
Sbjct: 423  MILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482

Query: 983  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1042
             L  + L   L     +P      +    L L                    L  FL  L
Sbjct: 483  SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKL 542

Query: 1043 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1073
               +       L + LL  +L + +LL LFL
Sbjct: 543  SKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573

Length = 573

>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 43.2 bits (103), Expect = 0.001
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 6/211 (2%)

Query: 901  LILPLFLLLFLFLLLLFLLLFLFLLL----FLLLLFLILPLFLLLFLFLLLLFLLLFLFL 956
            LIL +  +  L   + FL  F   L     F L+ + +   F L  L  L       L  
Sbjct: 363  LILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKS 422

Query: 957  LLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1014
            ++ LL + +     L  L+F    ++ L  +L LL   ++L      + L  + L     
Sbjct: 423  MILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482

Query: 1015 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1074
             L  + L   L     +P      +    L L                    L  FL  L
Sbjct: 483  SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKL 542

Query: 1075 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1105
               +       L + LL  +L + +LL LFL
Sbjct: 543  SKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573

Length = 573

>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 43.2 bits (103), Expect = 0.001
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 6/211 (2%)

Query: 933  LILPLFLLLFLFLLLLFLLLFLFLLL----FLLLLFLILPLFLLLFLFLLLLFLLLFLFL 988
            LIL +  +  L   + FL  F   L     F L+ + +   F L  L  L       L  
Sbjct: 363  LILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKS 422

Query: 989  LLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1046
            ++ LL + +     L  L+F    ++ L  +L LL   ++L      + L  + L     
Sbjct: 423  MILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482

Query: 1047 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1106
             L  + L   L     +P      +    L L                    L  FL  L
Sbjct: 483  SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKL 542

Query: 1107 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1137
               +       L + LL  +L + +LL LFL
Sbjct: 543  SKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573

Length = 573

>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 43.2 bits (103), Expect = 0.001
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 6/211 (2%)

Query: 965  LILPLFLLLFLFLLLLFLLLFLFLLL----FLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1020
            LIL +  +  L   + FL  F   L     F L+ + +   F L  L  L       L  
Sbjct: 363  LILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKS 422

Query: 1021 LLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1078
            ++ LL + +     L  L+F    ++ L  +L LL   ++L      + L  + L     
Sbjct: 423  MILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482

Query: 1079 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1138
             L  + L   L     +P      +    L L                    L  FL  L
Sbjct: 483  SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKL 542

Query: 1139 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1169
               +       L + LL  +L + +LL LFL
Sbjct: 543  SKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573

Length = 573

>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 43.2 bits (103), Expect = 0.001
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 6/211 (2%)

Query: 997  LILPLFLLLFLFLLLLFLLLFLFLLL----FLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1052
            LIL +  +  L   + FL  F   L     F L+ + +   F L  L  L       L  
Sbjct: 363  LILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKS 422

Query: 1053 LLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1110
            ++ LL + +     L  L+F    ++ L  +L LL   ++L      + L  + L     
Sbjct: 423  MILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482

Query: 1111 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1170
             L  + L   L     +P      +    L L                    L  FL  L
Sbjct: 483  SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKL 542

Query: 1171 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1201
               +       L + LL  +L + +LL LFL
Sbjct: 543  SKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573

Length = 573

>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 43.2 bits (103), Expect = 0.001
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 6/211 (2%)

Query: 1029 LILPLFLLLFLFLLLLFLLLFLFLLL----FLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1084
            LIL +  +  L   + FL  F   L     F L+ + +   F L  L  L       L  
Sbjct: 363  LILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKS 422

Query: 1085 LLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1142
            ++ LL + +     L  L+F    ++ L  +L LL   ++L      + L  + L     
Sbjct: 423  MILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482

Query: 1143 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1202
             L  + L   L     +P      +    L L                    L  FL  L
Sbjct: 483  SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKL 542

Query: 1203 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1233
               +       L + LL  +L + +LL LFL
Sbjct: 543  SKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573

Length = 573

>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 43.2 bits (103), Expect = 0.001
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 6/211 (2%)

Query: 1061 LILPLFLLLFLFLLLLFLLLFLFLLL----FLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1116
            LIL +  +  L   + FL  F   L     F L+ + +   F L  L  L       L  
Sbjct: 363  LILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKS 422

Query: 1117 LLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1174
            ++ LL + +     L  L+F    ++ L  +L LL   ++L      + L  + L     
Sbjct: 423  MILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482

Query: 1175 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1234
             L  + L   L     +P      +    L L                    L  FL  L
Sbjct: 483  SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKL 542

Query: 1235 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1265
               +       L + LL  +L + +LL LFL
Sbjct: 543  SKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573

Length = 573

>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 43.2 bits (103), Expect = 0.001
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 6/211 (2%)

Query: 1093 LILPLFLLLFLFLLLLFLLLFLFLLL----FLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1148
            LIL +  +  L   + FL  F   L     F L+ + +   F L  L  L       L  
Sbjct: 363  LILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKS 422

Query: 1149 LLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1206
            ++ LL + +     L  L+F    ++ L  +L LL   ++L      + L  + L     
Sbjct: 423  MILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482

Query: 1207 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1266
             L  + L   L     +P      +    L L                    L  FL  L
Sbjct: 483  SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKL 542

Query: 1267 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1297
               +       L + LL  +L + +LL LFL
Sbjct: 543  SKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573

Length = 573

>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 43.2 bits (103), Expect = 0.001
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 6/211 (2%)

Query: 1125 LILPLFLLLFLFLLLLFLLLFLFLLL----FLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1180
            LIL +  +  L   + FL  F   L     F L+ + +   F L  L  L       L  
Sbjct: 363  LILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKS 422

Query: 1181 LLFLLLLFLILPLFL--LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1238
            ++ LL + +     L  L+F    ++ L  +L LL   ++L      + L  + L     
Sbjct: 423  MILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482

Query: 1239 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1298
             L  + L   L     +P      +    L L                    L  FL  L
Sbjct: 483  SLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKL 542

Query: 1299 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1329
               +       L + LL  +L + +LL LFL
Sbjct: 543  SKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573

Length = 573

>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only]

 Score = 42.7 bits (101), Expect = 0.001
 Identities = 104/417 (24%), Positives = 147/417 (35%), Gaps = 26/417 (6%)

Query: 951  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1010
            L+   L L LLL+ L+  LF    + LLL          L +LL  ++ P  L + L  L
Sbjct: 92   LVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSAL 151

Query: 1011 LLFLLL------------FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1058
               +L              L  +  + L   + P F    L L    L+  L  LL  L 
Sbjct: 152  FGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLP 211

Query: 1059 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1118
                  L +          L  FL L+L  LL   I     LL    +  FL       L
Sbjct: 212  ALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVSIS-QINLLIDTAIASFLAEGSVSWL 270

Query: 1119 FLLLLFLILPLFLLLFLFLLLLFLLLF-------LFLLLFLLLLFLILPLFLLLFLFLLL 1171
            +       LPL +       +L   L            L LL   L L L L L     L
Sbjct: 271  YYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGL 330

Query: 1172 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL-----PLF 1226
            L L   +  LLF    F    + +           L+   L+  L  +F        P+ 
Sbjct: 331  LVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMK 390

Query: 1227 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPL-FLLLFLFLLLLFLLLFLFLLLFLLLLFL 1285
            + +   ++ + L L L   L  + L L   L   +  L L  L     ++L      LFL
Sbjct: 391  IAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFL 450

Query: 1286 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLL 1342
            IL L L   +    L  LL L    +LL   L++ L +LL L LL   ++  +L LL
Sbjct: 451  ILKLLLASAIMAAALLALLHLAQREWLLGGLLLIRLGVLLLLVLLGAGVYFAMLLLL 507

Length = 518

>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 88/403 (21%), Positives = 146/403 (36%), Gaps = 10/403 (2%)

Query: 781  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 840
            L L       L FLFL+ F  L+F       L F F   +F+LL   ++  L L+ L   
Sbjct: 1    LSLLFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEK 60

Query: 841  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL----LFLFLLLFL 896
             F LL L  LL+ + L  F+   +L+L++   L +   L ++L +      +     L  
Sbjct: 61   NFNLLILSNLLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLF 120

Query: 897  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL---FLLLFLFLLLLFLLLF 953
               F   P   +         L  F F L + +   L L     F + FL L L    + 
Sbjct: 121  YAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFILSLSFMMKFPVYFLHLWLPKAHVE 180

Query: 954  LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL--FLLL 1011
                  +LL  L+L L    FL +L     ++    +   LL +IL  F  +F      L
Sbjct: 181  APTTASMLLAGLLLKLGTAGFLRILGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSL 240

Query: 1012 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1071
                    +   LL L  +     L  L ++L        +   +   + I    L+ F+
Sbjct: 241  AAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFM 300

Query: 1072 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL-FLLLLFLLLFLFLLLFLLLLFLILPLF 1130
                   + F  +   + L    +P  L  F  FL++    +      F +  + ++  +
Sbjct: 301  NSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFY 360

Query: 1131 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1173
              LFL +       F     F + L L L   +    +L L +
Sbjct: 361  YSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403

Length = 403

>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 88/403 (21%), Positives = 146/403 (36%), Gaps = 10/403 (2%)

Query: 813  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 872
            L L       L FLFL+ F  L+F       L F F   +F+LL   ++  L L+ L   
Sbjct: 1    LSLLFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEK 60

Query: 873  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL----LFLFLLLFL 928
             F LL L  LL+ + L  F+   +L+L++   L +   L ++L +      +     L  
Sbjct: 61   NFNLLILSNLLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLF 120

Query: 929  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL---FLLLFLFLLLLFLLLF 985
               F   P   +         L  F F L + +   L L     F + FL L L    + 
Sbjct: 121  YAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFILSLSFMMKFPVYFLHLWLPKAHVE 180

Query: 986  LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL--FLLL 1043
                  +LL  L+L L    FL +L     ++    +   LL +IL  F  +F      L
Sbjct: 181  APTTASMLLAGLLLKLGTAGFLRILGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSL 240

Query: 1044 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1103
                    +   LL L  +     L  L ++L        +   +   + I    L+ F+
Sbjct: 241  AAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFM 300

Query: 1104 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL-FLLLLFLLLFLFLLLFLLLLFLILPLF 1162
                   + F  +   + L    +P  L  F  FL++    +      F +  + ++  +
Sbjct: 301  NSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFY 360

Query: 1163 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1205
              LFL +       F     F + L L L   +    +L L +
Sbjct: 361  YSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403

Length = 403

>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 88/403 (21%), Positives = 146/403 (36%), Gaps = 10/403 (2%)

Query: 845  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 904
            L L       L FLFL+ F  L+F       L F F   +F+LL   ++  L L+ L   
Sbjct: 1    LSLLFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEK 60

Query: 905  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL----LFLFLLLFL 960
             F LL L  LL+ + L  F+   +L+L++   L +   L ++L +      +     L  
Sbjct: 61   NFNLLILSNLLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLF 120

Query: 961  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL---FLLLFLFLLLLFLLLF 1017
               F   P   +         L  F F L + +   L L     F + FL L L    + 
Sbjct: 121  YAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFILSLSFMMKFPVYFLHLWLPKAHVE 180

Query: 1018 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL--FLLL 1075
                  +LL  L+L L    FL +L     ++    +   LL +IL  F  +F      L
Sbjct: 181  APTTASMLLAGLLLKLGTAGFLRILGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSL 240

Query: 1076 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1135
                    +   LL L  +     L  L ++L        +   +   + I    L+ F+
Sbjct: 241  AAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFM 300

Query: 1136 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL-FLLLLFLLLFLFLLLFLLLLFLILPLF 1194
                   + F  +   + L    +P  L  F  FL++    +      F +  + ++  +
Sbjct: 301  NSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFY 360

Query: 1195 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1237
              LFL +       F     F + L L L   +    +L L +
Sbjct: 361  YSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403

Length = 403

>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 88/403 (21%), Positives = 146/403 (36%), Gaps = 10/403 (2%)

Query: 877  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 936
            L L       L FLFL+ F  L+F       L F F   +F+LL   ++  L L+ L   
Sbjct: 1    LSLLFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEK 60

Query: 937  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL----LFLFLLLFL 992
             F LL L  LL+ + L  F+   +L+L++   L +   L ++L +      +     L  
Sbjct: 61   NFNLLILSNLLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLF 120

Query: 993  LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL---FLLLFLFLLLLFLLLF 1049
               F   P   +         L  F F L + +   L L     F + FL L L    + 
Sbjct: 121  YAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFILSLSFMMKFPVYFLHLWLPKAHVE 180

Query: 1050 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL--FLLL 1107
                  +LL  L+L L    FL +L     ++    +   LL +IL  F  +F      L
Sbjct: 181  APTTASMLLAGLLLKLGTAGFLRILGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSL 240

Query: 1108 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1167
                    +   LL L  +     L  L ++L        +   +   + I    L+ F+
Sbjct: 241  AAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFM 300

Query: 1168 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL-FLLLLFLLLFLFLLLFLLLLFLILPLF 1226
                   + F  +   + L    +P  L  F  FL++    +      F +  + ++  +
Sbjct: 301  NSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFY 360

Query: 1227 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1269
              LFL +       F     F + L L L   +    +L L +
Sbjct: 361  YSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403

Length = 403

>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 88/403 (21%), Positives = 146/403 (36%), Gaps = 10/403 (2%)

Query: 909  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 968
            L L       L FLFL+ F  L+F       L F F   +F+LL   ++  L L+ L   
Sbjct: 1    LSLLFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEK 60

Query: 969  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL----LFLFLLLFL 1024
             F LL L  LL+ + L  F+   +L+L++   L +   L ++L +      +     L  
Sbjct: 61   NFNLLILSNLLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLF 120

Query: 1025 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL---FLLLFLFLLLLFLLLF 1081
               F   P   +         L  F F L + +   L L     F + FL L L    + 
Sbjct: 121  YAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFILSLSFMMKFPVYFLHLWLPKAHVE 180

Query: 1082 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL--FLLL 1139
                  +LL  L+L L    FL +L     ++    +   LL +IL  F  +F      L
Sbjct: 181  APTTASMLLAGLLLKLGTAGFLRILGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSL 240

Query: 1140 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1199
                    +   LL L  +     L  L ++L        +   +   + I    L+ F+
Sbjct: 241  AAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFM 300

Query: 1200 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL-FLLLLFLLLFLFLLLFLLLLFLILPLF 1258
                   + F  +   + L    +P  L  F  FL++    +      F +  + ++  +
Sbjct: 301  NSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFY 360

Query: 1259 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1301
              LFL +       F     F + L L L   +    +L L +
Sbjct: 361  YSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403

Length = 403

>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 88/404 (21%), Positives = 144/404 (35%), Gaps = 10/404 (2%)

Query: 941  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1000
            L L       L FLFL+ F  L+F       L F F   +F+LL   ++  L L+ L   
Sbjct: 1    LSLLFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEK 60

Query: 1001 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL----LFLFLLLFL 1056
             F LL L  LL+ + L  F+   +L+L++   L +   L ++L +      +     L  
Sbjct: 61   NFNLLILSNLLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLF 120

Query: 1057 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL---FLLLFLFLLLLFLLLF 1113
               F   P   +         L  F F L + +   L L     F + FL L L    + 
Sbjct: 121  YAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFILSLSFMMKFPVYFLHLWLPKAHVE 180

Query: 1114 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL--FLLL 1171
                  +LL  L+L L    FL +L     ++    +   LL +IL  F  +F      L
Sbjct: 181  APTTASMLLAGLLLKLGTAGFLRILGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSL 240

Query: 1172 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1231
                    +   LL L  +     L  L ++L        +   +   + I    L+ F+
Sbjct: 241  AAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFM 300

Query: 1232 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1291
                   + F  +   + L    +P  L  F    L+    F+        +F    +  
Sbjct: 301  NSFFSSSMFFGLIFSLVFLSNSGVPPSLS-FFSEFLIISNSFMKNKFSFFFIFFYFLVSF 359

Query: 1292 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLF 1335
               LFL++   +   F       + L LPL  ++F    L   +
Sbjct: 360  YYSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403

Length = 403

>gnl|CDD|214442 MTH00160, ND2, NADH dehydrogenase subunit 2; Provisional

 Score = 42.1 bits (100), Expect = 0.001
 Identities = 67/274 (24%), Positives = 105/274 (38%), Gaps = 22/274 (8%)

Query: 770  ITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 829
            + Q+ A   LL  + L +L L+LF  +   L+   L+L L    F F     +    ++ 
Sbjct: 62   LIQALASIILLFSIILNMLNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWIN 121

Query: 830  LFLLLLFL-ILPLFLLLFLFLLLLFLLLFLFLLLF-------------LLLLFLILPLFL 875
             F+L+ +  I PL LL +L      +++ +   +              +L    I  L  
Sbjct: 122  CFILMTWQKIAPLILLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGW 181

Query: 876  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 935
            +L   ++   L L  FL+  ++ L +IL        FL  LF        +  LL   +L
Sbjct: 182  MLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLL 241

Query: 936  PL--------FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 987
             L        FL  ++ + LL      FLL  L++  LI   F L   +  L+       
Sbjct: 242  SLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNK 301

Query: 988  LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1021
              L        L L  L F+ L  L L   LFLL
Sbjct: 302  WNLKKKKNKFSLILNFLSFISLFGLILSSLLFLL 335

Length = 335

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 42.3 bits (100), Expect = 0.002
 Identities = 60/280 (21%), Positives = 108/280 (38%), Gaps = 10/280 (3%)

Query: 826  LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 885
            + ++  LL           + L L  +   L + LL+ ++ L LI+  F           
Sbjct: 1    INIIFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFL 60

Query: 886  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL------LFLILPLFL 939
            +      ++ + +L LIL L L+  L  L+ +    +               F   P  L
Sbjct: 61   MRHKGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNL 120

Query: 940  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 999
             L LF+  L+ L      LF  ++ ++L     L L+  +  +       + L L  L+L
Sbjct: 121  FLLLFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLL 180

Query: 1000 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFL----ILPLFLLLFLFLLLLFLLLFLFLLLF 1055
             L   + +     ++L F+ L LFL  +      +     L  L  +LL +  F+     
Sbjct: 181  ALSPYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAI 240

Query: 1056 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1095
            + ++ + + LFL L L      +L F  ++L  LL F I 
Sbjct: 241  IFVIAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSFGIT 280

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 42.3 bits (100), Expect = 0.002
 Identities = 60/280 (21%), Positives = 108/280 (38%), Gaps = 10/280 (3%)

Query: 858  LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 917
            + ++  LL           + L L  +   L + LL+ ++ L LI+  F           
Sbjct: 1    INIIFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFL 60

Query: 918  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL------LFLILPLFL 971
            +      ++ + +L LIL L L+  L  L+ +    +               F   P  L
Sbjct: 61   MRHKGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNL 120

Query: 972  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1031
             L LF+  L+ L      LF  ++ ++L     L L+  +  +       + L L  L+L
Sbjct: 121  FLLLFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLL 180

Query: 1032 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFL----ILPLFLLLFLFLLLLFLLLFLFLLLF 1087
             L   + +     ++L F+ L LFL  +      +     L  L  +LL +  F+     
Sbjct: 181  ALSPYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAI 240

Query: 1088 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1127
            + ++ + + LFL L L      +L F  ++L  LL F I 
Sbjct: 241  IFVIAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSFGIT 280

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 42.3 bits (100), Expect = 0.002
 Identities = 60/280 (21%), Positives = 108/280 (38%), Gaps = 10/280 (3%)

Query: 890  LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 949
            + ++  LL           + L L  +   L + LL+ ++ L LI+  F           
Sbjct: 1    INIIFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFL 60

Query: 950  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL------LFLILPLFL 1003
            +      ++ + +L LIL L L+  L  L+ +    +               F   P  L
Sbjct: 61   MRHKGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNL 120

Query: 1004 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1063
             L LF+  L+ L      LF  ++ ++L     L L+  +  +       + L L  L+L
Sbjct: 121  FLLLFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLL 180

Query: 1064 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFL----ILPLFLLLFLFLLLLFLLLFLFLLLF 1119
             L   + +     ++L F+ L LFL  +      +     L  L  +LL +  F+     
Sbjct: 181  ALSPYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAI 240

Query: 1120 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1159
            + ++ + + LFL L L      +L F  ++L  LL F I 
Sbjct: 241  IFVIAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSFGIT 280

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 42.3 bits (100), Expect = 0.002
 Identities = 60/280 (21%), Positives = 108/280 (38%), Gaps = 10/280 (3%)

Query: 922  LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 981
            + ++  LL           + L L  +   L + LL+ ++ L LI+  F           
Sbjct: 1    INIIFILLFSITFYFAIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFL 60

Query: 982  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL------LFLILPLFL 1035
            +      ++ + +L LIL L L+  L  L+ +    +               F   P  L
Sbjct: 61   MRHKGVTIIVIFILLLILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNL 120

Query: 1036 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1095
             L LF+  L+ L      LF  ++ ++L     L L+  +  +       + L L  L+L
Sbjct: 121  FLLLFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLL 180

Query: 1096 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFL----ILPLFLLLFLFLLLLFLLLFLFLLLF 1151
             L   + +     ++L F+ L LFL  +      +     L  L  +LL +  F+     
Sbjct: 181  ALSPYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAI 240

Query: 1152 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1191
            + ++ + + LFL L L      +L F  ++L  LL F I 
Sbjct: 241  IFVIAIFIVLFLQLLLENQKKKILKFTLVVLIFLLSFGIT 280

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 8/139 (5%)

Query: 1220 FLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1279
            ++IL L  LL L + +L LL  L L++FL+LLF +        L L    LLL+L L + 
Sbjct: 259  YVILDLLGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAIL 318

Query: 1280 LLLLFLILPLF------LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 1333
             L L  I+  F      LL+   L  + L+L +FL + +    +I     LL+LF     
Sbjct: 319  TLSLLRIVGYFNYSASGLLVPPALGPMLLILLVFLRIAIFSSSMI--AIALLYLFGGSYN 376

Query: 1334 LFLLLLFLLSSFSSSSSSS 1352
              + L+ LLSSFS+     
Sbjct: 377  SEIALIALLSSFSALVLLR 395

Length = 700

>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase

 Score = 42.2 bits (100), Expect = 0.002
 Identities = 39/117 (33%), Positives = 50/117 (42%), Gaps = 13/117 (11%)

Query: 1236 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL-----------LF 1284
            L L+L   LL +LL         +  +L LLLL +   LFLL+F L            L 
Sbjct: 4    LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAV--LLFLLIFALFGLYRSWRRRSRLR 61

Query: 1285 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFL 1341
             +L   LL +    L+  LL   L        L L L+ LL L LLLL   +L L L
Sbjct: 62   EMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118

This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis , the Methylobacillus EpsB protein involved in methanolan biosynthesis , as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier , knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451

>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function unknown]

 Score = 42.3 bits (100), Expect = 0.002
 Identities = 47/197 (23%), Positives = 66/197 (33%), Gaps = 11/197 (5%)

Query: 1161 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1220
            + LL+   L +L  L  + LL       L   L LL  +  L L     L   L   LL 
Sbjct: 9    VRLLVPQILAILVFLSGVILLFSGATPSLDERLRLLPRIVPLPLIEASHLTASLLGALLL 68

Query: 1221 LILP---LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL--- 1274
            L+       L       L+ L+L L L L   L   I    L L   LLL     F    
Sbjct: 69   LLARGLRKRLKRAWIAALIVLILGLVLSLAKGLA-WIEAAVLFLIAVLLLAGRRAFYRKS 127

Query: 1275 FLLLFLLLLFLILPLFLLLF-LFLLLLFLLLFLFLLLFLLLLF---LILPLFLLLFLFLL 1330
             LL+  +    +    + L     L  F    +     L   F      P FL   L + 
Sbjct: 128  LLLVQSISPGWLAAFIVALAAANWLGGFAYADVEYSNDLWWEFPFTGSAPRFLRALLGVF 187

Query: 1331 LLFLFLLLLFLLSSFSS 1347
            +  + L +  LL   ++
Sbjct: 188  IALIALGIWALLRPRAT 204

Length = 538

>gnl|CDD|217785 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 75/312 (24%), Positives = 113/312 (36%), Gaps = 10/312 (3%)

Query: 814  FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 873
            + + LL  L   L   LFL   +L+   F    L L L   L   +L   +  L+     
Sbjct: 56   YFYPLLFALPYKLLARLFLDSKYLV---FYAPRLLLGLFSALADYYLYRAVCRLYGKEIA 112

Query: 874  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 933
               L L L    +       L      ++  + L   L    +      +  L  +LL  
Sbjct: 113  RWALLLSLSSWGMFYASTRTLPNSFEMILTSIALYYLLEYGSVPNTSVSYKYLKAVLLIA 172

Query: 934  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 993
             L +       LL L L+L+  L L    L L L L + L L +LLL L   + +  +  
Sbjct: 173  ALAILGRPTSALLWLPLVLYHLLRLPGKRLKLFLFLAISLGLLVLLLVLGAVILIDSYFY 232

Query: 994  LLFLILPLFLLLFLFLLLLFLL------LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 1047
              F+  PL  L +  L     L       + F      +L   L  F+L  L L+   LL
Sbjct: 233  GRFVFTPLNFLKYNVLSNGSSLYGTHPWYWYFSNGLPNILGPFLLAFILGPLVLVSRLLL 292

Query: 1048 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 1107
            L   +L++L +  L  P     FL+ +   + L   + L  L     +   L L   LL 
Sbjct: 293  LLAPILIWLFVYSLQ-PHKEERFLYPIYPLICLSAAIALDRLSRKWKVSKKLSLLFLLLF 351

Query: 1108 LFLLLFLFLLLF 1119
              + L LF  L 
Sbjct: 352  FNVSLALFFGLV 363

Members of this family are mannosyltransferase enzymes. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis. Length = 412

>gnl|CDD|217785 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 73/307 (23%), Positives = 112/307 (36%), Gaps = 28/307 (9%)

Query: 852  LFLLLFLFLLLFLLLLFLILPLFLLLF--LFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 909
             + LLF      L  LFL     +     L L L   L   +L   +  L+        L
Sbjct: 57   FYPLLFALPYKLLARLFLDSKYLVFYAPRLLLGLFSALADYYLYRAVCRLYGKEIARWAL 116

Query: 910  FLFLLLLFLLLF------------LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 957
             L L    +               L  +    LL         +    L   LL+    +
Sbjct: 117  LLSLSSWGMFYASTRTLPNSFEMILTSIALYYLLEYGSVPNTSVSYKYLKAVLLIAALAI 176

Query: 958  L---FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1014
            L      LL+L L L+ LL L    L L LFL + L LL+L L+L   +L+  +    F+
Sbjct: 177  LGRPTSALLWLPLVLYHLLRLPGKRLKLFLFLAISLGLLVLLLVLGAVILIDSYFYGRFV 236

Query: 1015 LLFLFLLLFLLL-----LFLILP-LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1068
               L  L + +L     L+   P  +        +L   L  F+L  L+L+  +L L   
Sbjct: 237  FTPLNFLKYNVLSNGSSLYGTHPWYWYFSNGLPNILGPFLLAFILGPLVLVSRLLLLLAP 296

Query: 1069 LFLFLLLLFLL-----LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1123
            + ++L +  L       FL+ +  L+ L   + L  L   + +   L L   LL F + L
Sbjct: 297  ILIWLFVYSLQPHKEERFLYPIYPLICLSAAIALDRLSRKWKVSKKLSLLFLLLFFNVSL 356

Query: 1124 FLILPLF 1130
             L   L 
Sbjct: 357  ALFFGLV 363

Members of this family are mannosyltransferase enzymes. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis. Length = 412

>gnl|CDD|217785 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 73/307 (23%), Positives = 112/307 (36%), Gaps = 28/307 (9%)

Query: 980  LFLLLFLFLLLFLLLLFLILPLFLLLF--LFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1037
             + LLF      L  LFL     +     L L L   L   +L   +  L+        L
Sbjct: 57   FYPLLFALPYKLLARLFLDSKYLVFYAPRLLLGLFSALADYYLYRAVCRLYGKEIARWAL 116

Query: 1038 FLFLLLLFLLLF------------LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1085
             L L    +               L  +    LL         +    L   LL+    +
Sbjct: 117  LLSLSSWGMFYASTRTLPNSFEMILTSIALYYLLEYGSVPNTSVSYKYLKAVLLIAALAI 176

Query: 1086 L---FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1142
            L      LL+L L L+ LL L    L L LFL + L LL+L L+L   +L+  +    F+
Sbjct: 177  LGRPTSALLWLPLVLYHLLRLPGKRLKLFLFLAISLGLLVLLLVLGAVILIDSYFYGRFV 236

Query: 1143 LLFLFLLLFLLL-----LFLILP-LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1196
               L  L + +L     L+   P  +        +L   L  F+L  L+L+  +L L   
Sbjct: 237  FTPLNFLKYNVLSNGSSLYGTHPWYWYFSNGLPNILGPFLLAFILGPLVLVSRLLLLLAP 296

Query: 1197 LFLFLLLLFLL-----LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1251
            + ++L +  L       FL+ +  L+ L   + L  L   + +   L L   LL F + L
Sbjct: 297  ILIWLFVYSLQPHKEERFLYPIYPLICLSAAIALDRLSRKWKVSKKLSLLFLLLFFNVSL 356

Query: 1252 FLILPLF 1258
             L   L 
Sbjct: 357  ALFFGLV 363

Members of this family are mannosyltransferase enzymes. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis. Length = 412

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 42.2 bits (99), Expect = 0.002
 Identities = 44/135 (32%), Positives = 63/135 (46%)

Query: 1211 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 1270
             L + LL  +L      L     +LL   L L LLL LL L  I+P  LL+ L  LL  L
Sbjct: 284  GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343

Query: 1271 LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 1330
            L  + L  FLL+L +   L L   L L +  +      L+  L+++L++ L + L L + 
Sbjct: 344  LANVILAAFLLILLIPPLLALFALLQLGVFLVTTKGLRLIAKLVVYLLVILIIFLPLVIW 403

Query: 1331 LLFLFLLLLFLLSSF 1345
             L L L L  L +  
Sbjct: 404  PLILILNLTLLKTVS 418

Length = 439

>gnl|CDD|227621 COG5305, COG5305, Predicted membrane protein [Function unknown]

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 17/330 (5%)

Query: 763  SVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLI--LPLFLLLFLFLLLL 820
            S+  +  + ++     L L +   L FLL   ++ LF   L     L   L      L+ 
Sbjct: 76   SISASKTVIETVLSLLLELLVHPPLYFLLAHFWMALFGNSLLASRSLSALLSALAIPLVY 135

Query: 821  FLLLFLF---LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI-LPLFLL 876
            +L   LF     L    L  I P  +          L +   L+   LLL  I LP    
Sbjct: 136  WLGRELFGSTTALLAAALMAISPFHIFYSQEARSYALAVATTLISATLLLRAIRLPTSRK 195

Query: 877  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 936
            L    L+  LLL L LL        ++   + + L+  L          LFL+   L   
Sbjct: 196  LLPGWLIYALLLILSLLTHYFFALTVIAHGVYVLLWASLKNR-----QSLFLIWWLLATA 250

Query: 937  LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 996
              LL FL  LL++      + +  L+    +   L+  ++ L+   LL   LL F LL  
Sbjct: 251  AGLLAFLPWLLVYFANSFRVGIPDLITLDGIVGQLINPIYPLIAAWLLAFSLLFFDLLHG 310

Query: 997  LILPLFLLL-FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1055
            L  P+  +  FL+ + L ++L L  L  L        L     LF+L L +   L L+L 
Sbjct: 311  LDFPINGVARFLYPIWLAIILILGALYTLCRATERKIL-----LFILTLIIAPALPLILS 365

Query: 1056 LLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1085
             L+   I     L+  +L+LL  + +L LL
Sbjct: 366  DLVSVFITRNPYLIPSYLILLLGVAYLNLL 395

Length = 552

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 43/176 (24%), Positives = 64/176 (36%), Gaps = 14/176 (7%)

Query: 1133 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1192
                L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36   AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 1193 LFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILP------LFLL--LFLFLLLLFLLLF 1241
              L+L +  LL  +L   FL     L      + P      +F L  L   L  L  ++ 
Sbjct: 96   FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVL 155

Query: 1242 LFLLLFLLLLFLILPLFLLLFLFL---LLLFLLLFLFLLLFLLLLFLILPLFLLLF 1294
            + L+ + +L   +  L  L        L +F+ L   LLL +LLL LI+  F   +
Sbjct: 156  VGLVAYFVLKNHLSELLSLAGQSPVAALSIFMELLGKLLLAVLLLLLIVAAFDYFY 211

Length = 363

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 38/176 (21%), Positives = 56/176 (31%), Gaps = 29/176 (16%)

Query: 813 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 872
               L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36  AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 873 LFLLLFLFLLLLFLLLFLFLL-----------------------------LFLLLLFLIL 903
             L+L +  LL  +L   FL                              L   LL ++L
Sbjct: 96  FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVL 155

Query: 904 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 959
              +  F+    L  LL L     +  L + + L   L L +LLL L++  F   +
Sbjct: 156 VGLVAYFVLKNHLSELLSLAGQSPVAALSIFMELLGKLLLAVLLLLLIVAAFDYFY 211

Length = 363

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 38/176 (21%), Positives = 56/176 (31%), Gaps = 29/176 (16%)

Query: 845 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 904
               L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36  AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 905 LFLLLFLFLLLLFLLLFLFLL-----------------------------LFLLLLFLIL 935
             L+L +  LL  +L   FL                              L   LL ++L
Sbjct: 96  FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVL 155

Query: 936 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 991
              +  F+    L  LL L     +  L + + L   L L +LLL L++  F   +
Sbjct: 156 VGLVAYFVLKNHLSELLSLAGQSPVAALSIFMELLGKLLLAVLLLLLIVAAFDYFY 211

Length = 363

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 38/176 (21%), Positives = 56/176 (31%), Gaps = 29/176 (16%)

Query: 909  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 968
                L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36   AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 969  LFLLLFLFLLLLFLLLFLFLL-----------------------------LFLLLLFLIL 999
              L+L +  LL  +L   FL                              L   LL ++L
Sbjct: 96   FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVL 155

Query: 1000 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1055
               +  F+    L  LL L     +  L + + L   L L +LLL L++  F   +
Sbjct: 156  VGLVAYFVLKNHLSELLSLAGQSPVAALSIFMELLGKLLLAVLLLLLIVAAFDYFY 211

Length = 363

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 38/176 (21%), Positives = 56/176 (31%), Gaps = 29/176 (16%)

Query: 941  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1000
                L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36   AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 1001 LFLLLFLFLLLLFLLLFLFLL-----------------------------LFLLLLFLIL 1031
              L+L +  LL  +L   FL                              L   LL ++L
Sbjct: 96   FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVL 155

Query: 1032 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1087
               +  F+    L  LL L     +  L + + L   L L +LLL L++  F   +
Sbjct: 156  VGLVAYFVLKNHLSELLSLAGQSPVAALSIFMELLGKLLLAVLLLLLIVAAFDYFY 211

Length = 363

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 38/176 (21%), Positives = 56/176 (31%), Gaps = 29/176 (16%)

Query: 1005 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1064
                L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36   AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 1065 LFLLLFLFLLLLFLLLFLFLL-----------------------------LFLLLLFLIL 1095
              L+L +  LL  +L   FL                              L   LL ++L
Sbjct: 96   FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVL 155

Query: 1096 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1151
               +  F+    L  LL L     +  L + + L   L L +LLL L++  F   +
Sbjct: 156  VGLVAYFVLKNHLSELLSLAGQSPVAALSIFMELLGKLLLAVLLLLLIVAAFDYFY 211

Length = 363

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 38/176 (21%), Positives = 56/176 (31%), Gaps = 29/176 (16%)

Query: 1037 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1096
                L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36   AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 1097 LFLLLFLFLLLLFLLLFLFLL-----------------------------LFLLLLFLIL 1127
              L+L +  LL  +L   FL                              L   LL ++L
Sbjct: 96   FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVL 155

Query: 1128 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1183
               +  F+    L  LL L     +  L + + L   L L +LLL L++  F   +
Sbjct: 156  VGLVAYFVLKNHLSELLSLAGQSPVAALSIFMELLGKLLLAVLLLLLIVAAFDYFY 211

Length = 363

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 38/176 (21%), Positives = 56/176 (31%), Gaps = 29/176 (16%)

Query: 1101 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1160
                L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36   AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 1161 LFLLLFLFLLLLFLLLFLFLL-----------------------------LFLLLLFLIL 1191
              L+L +  LL  +L   FL                              L   LL ++L
Sbjct: 96   FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSLLKIVL 155

Query: 1192 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLF 1247
               +  F+    L  LL L     +  L + + L   L L +LLL L++  F   +
Sbjct: 156  VGLVAYFVLKNHLSELLSLAGQSPVAALSIFMELLGKLLLAVLLLLLIVAAFDYFY 211

Length = 363

>gnl|CDD|218818 pfam05940, NnrS, NnrS protein

 Score = 42.2 bits (100), Expect = 0.002
 Identities = 78/285 (27%), Positives = 99/285 (34%), Gaps = 37/285 (12%)

Query: 1064 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF----LLLFLFLLLLFLLLFLF---- 1115
            P FLL  LF  L  LL  L L   L L     PL+     +LF F     +  FL     
Sbjct: 11   PFFLLGALFAALAVLLWLLALSGGLPLPPAGPPLWWHAHEMLFGFAGA-IVAGFLLTAVP 69

Query: 1116 ----------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1165
                        L  L+   +      L   LL L+L   L L     L  L+    +  
Sbjct: 70   NWTGRPPIRGKPLAALVALWLAGRLAFLLGGLLPLWLAALLDLAFLPALAALLAREIIRA 129

Query: 1166 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1225
              +  L F+ L L LL    LLF +  L   L L L  L L L L  LL  L+   ++P 
Sbjct: 130  RNWRNLFFVPL-LLLLGLANLLFHLALLGGDLALALHGLRLGLLLVALLISLIGGRVIPF 188

Query: 1226 FL----------LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLF 1275
            F                  L    L L LL +LL     L   L L    L L       
Sbjct: 189  FTRNWLPGAKPRPFPWLDRLALAALLLALLAWLLGPPSALTGALALAAGALHL------- 241

Query: 1276 LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1320
            + L     +  L + LL  L L  L+L L L LL    L  ++  
Sbjct: 242  VRLARWRGWRTLRVPLLWSLHLAYLWLPLGLLLLGLAALGLVLPG 286

This family consists of several bacterial NnrS like proteins. NnrS is a putative heme-Cu protein (NnrS) and a member of the short-chain dehydrogenase family. Expression of nnrS is dependent on the transcriptional regulator NnrR, which also regulates expression of genes required for the reduction of nitrite to nitrous oxide, including nirK and nor. NnrS is a haem- and copper-containing membrane protein. Genes encoding putative orthologues of NnrS are sometimes but not always found in bacteria encoding nitrite and/or nitric oxide reductase. Length = 379

>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.4 bits (100), Expect = 0.002
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 798 LFLLLLFLILPLFLLLFLFLLLLFLLLFLF------------LLLFLLLLFLILPLFLLL 845
           L       I PL L     L L F  L +F            LL    LL++I    +  
Sbjct: 147 LNEAYGLHITPLILTPLASLFLPFFYLTIFDRIKNLRAAGIKLLAGFTLLWIIFRNAIYD 206

Query: 846 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 905
                LL ++  L     L +L L+    L    F +L  LL FL + + L L+ L+L  
Sbjct: 207 IKGWSLLTIISRLLGFSILWILGLLFLSLLFFRRFGVLFSLLFFLMISILLSLISLLLLS 266

Query: 906 FLLLFL-------FLLLLFLLLFLFLLLFLLLLFLIL 935
            L L         F   +FLL    L+  L+++  + 
Sbjct: 267 RLSLANLIKGKLPFKRSMFLLTVCKLVAVLIVVSSLA 303

Length = 657

>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.4 bits (100), Expect = 0.002
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 862 LFLLLLFLILPLFLLLFLFLLLLFLLLFLF------------LLLFLLLLFLILPLFLLL 909
           L       I PL L     L L F  L +F            LL    LL++I    +  
Sbjct: 147 LNEAYGLHITPLILTPLASLFLPFFYLTIFDRIKNLRAAGIKLLAGFTLLWIIFRNAIYD 206

Query: 910 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 969
                LL ++  L     L +L L+    L    F +L  LL FL + + L L+ L+L  
Sbjct: 207 IKGWSLLTIISRLLGFSILWILGLLFLSLLFFRRFGVLFSLLFFLMISILLSLISLLLLS 266

Query: 970 FLLLFL-------FLLLLFLLLFLFLLLFLLLLFLIL 999
            L L         F   +FLL    L+  L+++  + 
Sbjct: 267 RLSLANLIKGKLPFKRSMFLLTVCKLVAVLIVVSSLA 303

Length = 657

>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.4 bits (100), Expect = 0.002
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 926  LFLLLLFLILPLFLLLFLFLLLLFLLLFLF------------LLLFLLLLFLILPLFLLL 973
            L       I PL L     L L F  L +F            LL    LL++I    +  
Sbjct: 147  LNEAYGLHITPLILTPLASLFLPFFYLTIFDRIKNLRAAGIKLLAGFTLLWIIFRNAIYD 206

Query: 974  FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1033
                 LL ++  L     L +L L+    L    F +L  LL FL + + L L+ L+L  
Sbjct: 207  IKGWSLLTIISRLLGFSILWILGLLFLSLLFFRRFGVLFSLLFFLMISILLSLISLLLLS 266

Query: 1034 FLLLFL-------FLLLLFLLLFLFLLLFLLLLFLIL 1063
             L L         F   +FLL    L+  L+++  + 
Sbjct: 267  RLSLANLIKGKLPFKRSMFLLTVCKLVAVLIVVSSLA 303

Length = 657

>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.4 bits (100), Expect = 0.002
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 990  LFLLLLFLILPLFLLLFLFLLLLFLLLFLF------------LLLFLLLLFLILPLFLLL 1037
            L       I PL L     L L F  L +F            LL    LL++I    +  
Sbjct: 147  LNEAYGLHITPLILTPLASLFLPFFYLTIFDRIKNLRAAGIKLLAGFTLLWIIFRNAIYD 206

Query: 1038 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1097
                 LL ++  L     L +L L+    L    F +L  LL FL + + L L+ L+L  
Sbjct: 207  IKGWSLLTIISRLLGFSILWILGLLFLSLLFFRRFGVLFSLLFFLMISILLSLISLLLLS 266

Query: 1098 FLLLFL-------FLLLLFLLLFLFLLLFLLLLFLIL 1127
             L L         F   +FLL    L+  L+++  + 
Sbjct: 267  RLSLANLIKGKLPFKRSMFLLTVCKLVAVLIVVSSLA 303

Length = 657

>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.4 bits (100), Expect = 0.002
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 1054 LFLLLLFLILPLFLLLFLFLLLLFLLLFLF------------LLLFLLLLFLILPLFLLL 1101
            L       I PL L     L L F  L +F            LL    LL++I    +  
Sbjct: 147  LNEAYGLHITPLILTPLASLFLPFFYLTIFDRIKNLRAAGIKLLAGFTLLWIIFRNAIYD 206

Query: 1102 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1161
                 LL ++  L     L +L L+    L    F +L  LL FL + + L L+ L+L  
Sbjct: 207  IKGWSLLTIISRLLGFSILWILGLLFLSLLFFRRFGVLFSLLFFLMISILLSLISLLLLS 266

Query: 1162 FLLLFL-------FLLLLFLLLFLFLLLFLLLLFLIL 1191
             L L         F   +FLL    L+  L+++  + 
Sbjct: 267  RLSLANLIKGKLPFKRSMFLLTVCKLVAVLIVVSSLA 303

Length = 657

>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.4 bits (100), Expect = 0.002
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 1118 LFLLLLFLILPLFLLLFLFLLLLFLLLFLF------------LLLFLLLLFLILPLFLLL 1165
            L       I PL L     L L F  L +F            LL    LL++I    +  
Sbjct: 147  LNEAYGLHITPLILTPLASLFLPFFYLTIFDRIKNLRAAGIKLLAGFTLLWIIFRNAIYD 206

Query: 1166 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1225
                 LL ++  L     L +L L+    L    F +L  LL FL + + L L+ L+L  
Sbjct: 207  IKGWSLLTIISRLLGFSILWILGLLFLSLLFFRRFGVLFSLLFFLMISILLSLISLLLLS 266

Query: 1226 FLLLFL-------FLLLLFLLLFLFLLLFLLLLFLIL 1255
             L L         F   +FLL    L+  L+++  + 
Sbjct: 267  RLSLANLIKGKLPFKRSMFLLTVCKLVAVLIVVSSLA 303

Length = 657

>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.4 bits (100), Expect = 0.002
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 1182 LFLLLLFLILPLFLLLFLFLLLLFLLLFLF------------LLLFLLLLFLILPLFLLL 1229
            L       I PL L     L L F  L +F            LL    LL++I    +  
Sbjct: 147  LNEAYGLHITPLILTPLASLFLPFFYLTIFDRIKNLRAAGIKLLAGFTLLWIIFRNAIYD 206

Query: 1230 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1289
                 LL ++  L     L +L L+    L    F +L  LL FL + + L L+ L+L  
Sbjct: 207  IKGWSLLTIISRLLGFSILWILGLLFLSLLFFRRFGVLFSLLFFLMISILLSLISLLLLS 266

Query: 1290 FLLLFL-------FLLLLFLLLFLFLLLFLLLLFLIL 1319
             L L         F   +FLL    L+  L+++  + 
Sbjct: 267  RLSLANLIKGKLPFKRSMFLLTVCKLVAVLIVVSSLA 303

Length = 657

>gnl|CDD|223469 COG0392, COG0392, Predicted integral membrane protein [Function unknown]

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 66/258 (25%), Positives = 93/258 (36%), Gaps = 9/258 (3%)

Query: 1113 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1172
             +  +L LL + L + L  +L     L    +   L    L   L+  L  LL   LL L
Sbjct: 12   IIKKILGLLAVLLAIVLLFILLRLFGLDLKEVLAALKGINLTWLLLAFLLYLLSYALLTL 71

Query: 1173 FLLLFLFLLLF-LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1231
            +    L  L   L L  + L  F+  FL  +    L     + + L   L L + L+  +
Sbjct: 72   YDRTALKSLGVKLSLWKVALASFIAYFLNNITPAALGSGPAVRYRLYSRLGLSVALVSRI 131

Query: 1232 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1291
               LL       LLLFLL+L  +     L        FLLL   LL  LL+L L+    L
Sbjct: 132  LAFLLLTFGLGLLLLFLLILLFVPLKLAL--------FLLLLTLLLRILLILLLLAAAIL 183

Query: 1292 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSSSSSS 1351
            L+    L         L L L     +L   LL  +  L   L L LL L    + S   
Sbjct: 184  LILTAFLRRREFKIGRLRLRLPNRRGLLAQLLLSLVEWLADALILYLLLLALGVNVSFFL 243

Query: 1352 SFSYSSSSSSSSFSPLSP 1369
                   +  +     +P
Sbjct: 244  VLLAFLVAVLAGVISPTP 261

Length = 322

>gnl|CDD|233016 TIGR00546, lnt, apolipoprotein N-acyltransferase

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 44/156 (28%), Positives = 60/156 (38%), Gaps = 8/156 (5%)

Query: 1200 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF------- 1252
            F    FL    +L + L +   I      L +  L   L LF  L  +LL          
Sbjct: 1    FGFGFFLAGLFWLGIALSVNGFIAF-VAGLLVVGLPALLALFPGLAAYLLRRLAPFRKVL 59

Query: 1253 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1312
            L LPL   L  +L     L F + L+      L L     +F    L FL++FL  LL L
Sbjct: 60   LALPLLWTLAEWLRSFGFLGFPWGLIGYAQSSLPLIQIASIFGVWGLSFLVVFLNALLAL 119

Query: 1313 LLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSSS 1348
            +LL       LL    ++LL     LL+ L S +  
Sbjct: 120  VLLKKESFKKLLAIAVVVLLAALGFLLYELKSATPV 155

This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 41.9 bits (99), Expect = 0.002
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 11/103 (10%)

Query: 1251 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL----------FLLLL 1300
              ++  L L+L    L L L   L   L+     L + +F+L  L           L ++
Sbjct: 1    ALILTDLLLVLVALALALLLRDELSASLWSGAQLLTICVFILFGLYRAVWRASVSDLFII 60

Query: 1301 FLLLFLFLLLFLLLLFLILPLFL-LLFLFLLLLFLFLLLLFLL 1342
               +    L+ LL       L   ++ ++ LLLF+ +    LL
Sbjct: 61   LKAVLTSALVSLLFFSTRTDLPRSVVLVYWLLLFVLIGASRLL 103

Length = 588

>gnl|CDD|224748 COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 63/256 (24%), Positives = 86/256 (33%), Gaps = 7/256 (2%)

Query: 759  VADISVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 818
            +   + L  A++    + +       L  L  LL    +        +L   L L+   +
Sbjct: 98   LLLTAALLLALLPPGASAALWADLAALFYLSNLLLTLAVGAYFAASGLLSPLLHLWSLSV 157

Query: 819  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 878
                 L   LLL LL         LLL L L   FLLL L        L+      L  F
Sbjct: 158  EEQFYLLFPLLLLLLRRVRFALALLLLLLALASFFLLLALGPFATGAALYYGTATRLWEF 217

Query: 879  LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF 938
            L   L  L        +  LL   L L  L  L L +  +          LLL   L   
Sbjct: 218  LLGALAALWRP-KRRPWPALLAAALALLGLALLLLAVALIPGSSPFFPGDLLLVPSLGAA 276

Query: 939  LLLFLFLLLLFLLLFLFLLLFLLL------LFLILPLFLLLFLFLLLLFLLLFLFLLLFL 992
            LL+     L+     L     + L      L+L     L+  L+L+ L  L    LLL L
Sbjct: 277  LLVLAVAALVGGSRLLSSRPLVFLGDISYSLYLWHWPVLVFLLYLVGLSGLPISALLLIL 336

Query: 993  LLLFLILPLFLLLFLF 1008
              L L + L  L + F
Sbjct: 337  AALALSILLAALSYRF 352

Length = 386

>gnl|CDD|227317 COG4984, COG4984, Predicted membrane protein [Function unknown]

 Score = 41.8 bits (98), Expect = 0.003
 Identities = 109/509 (21%), Positives = 188/509 (36%), Gaps = 10/509 (1%)

Query: 775  AISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL--------LLLFLLLFL 826
            A+   LL    +   L + L   +  + +FL +   L+ + +            F+L  +
Sbjct: 124  ALLVTLLVTASVAFSLAISLLGDIVHMTIFLNMGFCLVCYEYFQERLKDQVNNWFILPMI 183

Query: 827  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 886
             L + +      L +      +++LL  L    L+ +         L L+L  F L++  
Sbjct: 184  ALFILVFAFGWALIVTYNNSGYVVLLSWLASAGLVYYYKEYRRFDFLNLILLFFYLVVSG 243

Query: 887  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 946
               + L      L  I  + LL FL  +     L +    +       +   ++  LF+L
Sbjct: 244  CAKILLSSGEDFLSDIFLVTLLAFLGTIGAIAGLLIKWFKWHNPTASRVTWLIVPLLFIL 303

Query: 947  LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1006
            L+  L  L L+       L     ++  + L L+  L+  F        F I  +  +  
Sbjct: 304  LIIFLTALLLITLFFSFGLEDGQDIIYPIILFLIIALVMHFNQFEKADWFDIAIVMFIAG 363

Query: 1007 LFLLLLFLLLFLFLLLFLLLLFLILPLFLL-LFLFLLLLFLLLFLFLLLFLLLLFLILPL 1065
             F+L     LF       L L  IL +F   L       F +  LF++ FL+ +   L  
Sbjct: 364  GFILYFIFRLFDGENDSYLALMAILSIFDYQLRSSNWFRFPIAALFIIAFLVYIGFFLLR 423

Query: 1066 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1125
            + L +   L  F L    +   LLL F         +   L+L       +LL + L   
Sbjct: 424  WYLYYEEHLGQFYLQIWIIAGGLLLYFFFSLSLERPYTIKLILIAWANELVLLAMNLDIF 483

Query: 1126 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 1185
                F         +  L   F ++       +   +L+  L LL+    + +F ++   
Sbjct: 484  NRWTFYDTAGQTPEMSDLNIWFHVITGYYFTALTDTWLIKSLHLLISITFI-IFFVIISR 542

Query: 1186 LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLL 1245
               L L L  L+ L LL L L       L L+LL L+  L +   LF+L L  ++     
Sbjct: 543  RFELTLFLLALIALTLLALCLGFIAVETLALILLLLLAYLSVSWVLFVLALLGVIMNLSY 602

Query: 1246 LFLLLLFLILPLFLLLFLFLLLLFLLLFL 1274
             + LL  L+   FLL+ + +LLL +   L
Sbjct: 603  YYYLLSILLHKSFLLMGVGILLLVVTFVL 631

Length = 644

>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]

 Score = 41.6 bits (98), Expect = 0.003
 Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 13/191 (6%)

Query: 1184 LLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL---PLFLLLFLFLLLLFLLL 1240
            L LL L + +  LL L +L++FL+L   L        L L    L L L L +L L LL 
Sbjct: 265  LGLLSLSVNILPLLGLLILVIFLILLFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLR 324

Query: 1241 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1300
             +    +     L +P  L   L +LL+FL + +F     ++   +L LF   +   + L
Sbjct: 325  IVGYFNYSASGLL-VPPALGPMLLILLVFLRIAIFS--SSMIAIALLYLFGGSYNSEIAL 381

Query: 1301 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSSSSSSSFSYSSSSS 1360
              LL  F  L LL               +L   LFL L+ +L   S   + + S+  +  
Sbjct: 382  IALLSSFSALVLLRKMSRR-------SDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQ 434

Query: 1361 SSSFSPLSPLF 1371
             + F+ LS L 
Sbjct: 435  DAIFAFLSGLL 445

Length = 700

>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion]

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 48/186 (25%), Positives = 59/186 (31%), Gaps = 19/186 (10%)

Query: 820 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 879
            F+  F  L   +LL  LI            L     +L +L    +L   L      F 
Sbjct: 3   HFMGRFRLLRRLVLLATLI------------LFLSTPWLRVLGSQAVLLDFLGRPFGFFG 50

Query: 880 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL-------LLLFLLLFLFLLLFLLLLF 932
                   L L LLL   L  L L   LL  +F        +L  L   L   LF L   
Sbjct: 51  LQFWAQEFLLLALLLIGALFGLFLITLLLGRVFCGWVCPQGVLTELAEGLRNKLFKLQKA 110

Query: 933 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 992
                 L L L   LLFLL+ L LL   +  +      LL  L       L      +F 
Sbjct: 111 PWPLRKLRLKLLKYLLFLLILLLLLYSWIGAYFAPVEPLLGRLLTGGFGRLAIGLFAVFA 170

Query: 993 LLLFLI 998
            LL   
Sbjct: 171 FLLLGF 176

Length = 386

>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion]

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 48/186 (25%), Positives = 59/186 (31%), Gaps = 19/186 (10%)

Query: 980  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1039
             F+  F  L   +LL  LI            L     +L +L    +L   L      F 
Sbjct: 3    HFMGRFRLLRRLVLLATLI------------LFLSTPWLRVLGSQAVLLDFLGRPFGFFG 50

Query: 1040 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL-------LLLFLLLFLFLLLFLLLLF 1092
                    L L LLL   L  L L   LL  +F        +L  L   L   LF L   
Sbjct: 51   LQFWAQEFLLLALLLIGALFGLFLITLLLGRVFCGWVCPQGVLTELAEGLRNKLFKLQKA 110

Query: 1093 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1152
                  L L L   LLFLL+ L LL   +  +      LL  L       L      +F 
Sbjct: 111  PWPLRKLRLKLLKYLLFLLILLLLLYSWIGAYFAPVEPLLGRLLTGGFGRLAIGLFAVFA 170

Query: 1153 LLLFLI 1158
             LL   
Sbjct: 171  FLLLGF 176

Length = 386

>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion]

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 48/186 (25%), Positives = 59/186 (31%), Gaps = 19/186 (10%)

Query: 1108 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1167
             F+  F  L   +LL  LI            L     +L +L    +L   L      F 
Sbjct: 3    HFMGRFRLLRRLVLLATLI------------LFLSTPWLRVLGSQAVLLDFLGRPFGFFG 50

Query: 1168 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL-------LLLFLLLFLFLLLFLLLLF 1220
                    L L LLL   L  L L   LL  +F        +L  L   L   LF L   
Sbjct: 51   LQFWAQEFLLLALLLIGALFGLFLITLLLGRVFCGWVCPQGVLTELAEGLRNKLFKLQKA 110

Query: 1221 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1280
                  L L L   LLFLL+ L LL   +  +      LL  L       L      +F 
Sbjct: 111  PWPLRKLRLKLLKYLLFLLILLLLLYSWIGAYFAPVEPLLGRLLTGGFGRLAIGLFAVFA 170

Query: 1281 LLLFLI 1286
             LL   
Sbjct: 171  FLLLGF 176

Length = 386

>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane (putative immunity) protein

 Score = 41.7 bits (98), Expect = 0.003
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 15/145 (10%)

Query: 965  LILPLFLLLFLFLLLLFLLLFLF-------------LLLFLLLLFLILPLFL--LLFLFL 1009
            L     L++   LL++  +LFL               L    L  ++  LF     +L +
Sbjct: 163  LKDLNILVILALLLIVIFVLFLIYYLMINMKRVAIYRLNGFSLRKILFRLFSKNCTYLLI 222

Query: 1010 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1069
              L +LL    LLF+     +L  ++ +    +LL LLL L +    LLL   + L   +
Sbjct: 223  SALLILLLSSFLLFIKGYTYLLKDYIFMLSLSVLLLLLLLLIISFLTLLLLSKMSLANSI 282

Query: 1070 FLFLLLLFLLLFLFLLLFLLLLFLI 1094
                   FLL+  ++   +LL+ +I
Sbjct: 283  KGKSSFKFLLIINYVCKLVLLVLVI 307

This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear [Cellular processes, Toxin production and resistance]. Length = 679

>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane (putative immunity) protein

 Score = 41.7 bits (98), Expect = 0.003
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 15/145 (10%)

Query: 1093 LILPLFLLLFLFLLLLFLLLFLF-------------LLLFLLLLFLILPLFL--LLFLFL 1137
            L     L++   LL++  +LFL               L    L  ++  LF     +L +
Sbjct: 163  LKDLNILVILALLLIVIFVLFLIYYLMINMKRVAIYRLNGFSLRKILFRLFSKNCTYLLI 222

Query: 1138 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1197
              L +LL    LLF+     +L  ++ +    +LL LLL L +    LLL   + L   +
Sbjct: 223  SALLILLLSSFLLFIKGYTYLLKDYIFMLSLSVLLLLLLLLIISFLTLLLLSKMSLANSI 282

Query: 1198 FLFLLLLFLLLFLFLLLFLLLLFLI 1222
                   FLL+  ++   +LL+ +I
Sbjct: 283  KGKSSFKFLLIINYVCKLVLLVLVI 307

This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear [Cellular processes, Toxin production and resistance]. Length = 679

>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane (putative immunity) protein

 Score = 41.7 bits (98), Expect = 0.003
 Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 26/154 (16%)

Query: 1221 LILPLFLLLFLFLLLLFLLLFLF-------------LLLFLLLLFLILPLFL--LLFLFL 1265
            L     L++   LL++  +LFL               L    L  ++  LF     +L +
Sbjct: 163  LKDLNILVILALLLIVIFVLFLIYYLMINMKRVAIYRLNGFSLRKILFRLFSKNCTYLLI 222

Query: 1266 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL---- 1321
              L +LL    LLF+     +L  ++ +    +LL LLL L +    LLL   + L    
Sbjct: 223  SALLILLLSSFLLFIKGYTYLLKDYIFMLSLSVLLLLLLLLIISFLTLLLLSKMSLANSI 282

Query: 1322 -------FLLLFLFLLLLFLFLLLLFLLSSFSSS 1348
                   FLL+  ++  L L +L++  L +  SS
Sbjct: 283  KGKSSFKFLLIINYVCKLVLLVLVIATLITILSS 316

This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear [Cellular processes, Toxin production and resistance]. Length = 679

>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 38/173 (21%), Positives = 53/173 (30%), Gaps = 29/173 (16%)

Query: 1197 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1256
                L+   LL F        L   +           L     L L   L L +L  +LP
Sbjct: 36   AASLLVGFLLLFFFGSYFARRLSGFLRAFLEFPESMDLDDESALELIKALLLEILKALLP 95

Query: 1257 LFLLLFLFLLLLFLLLFLFLLLF------------------------LLLLFLILPLFLL 1292
              L+L +  LL  +L   FL                           L+ L   L L ++
Sbjct: 96   FLLVLLVVGLLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQTLVELLKSL-LKIV 154

Query: 1293 LFLFLLLLFLLLFLFLLLFLLLLFLILPLF----LLLFLFLLLLFLFLLLLFL 1341
            L   +    L   L  LL L     +  L     LL  L L +L L L++   
Sbjct: 155  LVGLVAYFVLKNHLSELLSLAGQSPVAALSIFMELLGKLLLAVLLLLLIVAAF 207

Length = 363

>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only]

 Score = 41.5 bits (98), Expect = 0.003
 Identities = 99/425 (23%), Positives = 141/425 (33%), Gaps = 20/425 (4%)

Query: 791  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 850
            L+   L L LLL+ L+  LF    + LLL          L +LL  ++ P  L + L  L
Sbjct: 92   LVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSAL 151

Query: 851  LLFLLL------------FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 898
               +L              L  +  + L   + P F    L L    L+  L  LL  L 
Sbjct: 152  FGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLP 211

Query: 899  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 958
                  L +          L  FL L+L  LL   I     LL    +  FL       L
Sbjct: 212  ALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVSIS-QINLLIDTAIASFLAEGSVSWL 270

Query: 959  FLLLLFLILPLFLLLFLFLLLLFLLLF-------LFLLLFLLLLFLILPLFLLLFLFLLL 1011
            +       LPL +       +L   L            L LL   L L L L L     L
Sbjct: 271  YYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGL 330

Query: 1012 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1071
            L L   +  LLF    F    + +           L+   L+  L  +F           
Sbjct: 331  LVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMK 390

Query: 1072 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1131
              ++  ++  L  LL +  L  +           +   LL +L     + L      LFL
Sbjct: 391  IAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFL 450

Query: 1132 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1191
            +L L L    +   L  LL L     +L   LL+ L +LLL +LL   +   +LLL    
Sbjct: 451  ILKLLLASAIMAAALLALLHLAQREWLLGGLLLIRLGVLLLLVLLGAGVYFAMLLLLGFR 510

Query: 1192 PLFLL 1196
                 
Sbjct: 511  VRGFA 515

Length = 518

>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only]

 Score = 41.5 bits (98), Expect = 0.003
 Identities = 99/425 (23%), Positives = 141/425 (33%), Gaps = 20/425 (4%)

Query: 823  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 882
            L+   L L LLL+ L+  LF    + LLL          L +LL  ++ P  L + L  L
Sbjct: 92   LVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSAL 151

Query: 883  LLFLLL------------FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 930
               +L              L  +  + L   + P F    L L    L+  L  LL  L 
Sbjct: 152  FGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLP 211

Query: 931  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 990
                  L +          L  FL L+L  LL   I     LL    +  FL       L
Sbjct: 212  ALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVSIS-QINLLIDTAIASFLAEGSVSWL 270

Query: 991  FLLLLFLILPLFLLLFLFLLLLFLLLF-------LFLLLFLLLLFLILPLFLLLFLFLLL 1043
            +       LPL +       +L   L            L LL   L L L L L     L
Sbjct: 271  YYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGL 330

Query: 1044 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1103
            L L   +  LLF    F    + +           L+   L+  L  +F           
Sbjct: 331  LVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMK 390

Query: 1104 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1163
              ++  ++  L  LL +  L  +           +   LL +L     + L      LFL
Sbjct: 391  IAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFL 450

Query: 1164 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1223
            +L L L    +   L  LL L     +L   LL+ L +LLL +LL   +   +LLL    
Sbjct: 451  ILKLLLASAIMAAALLALLHLAQREWLLGGLLLIRLGVLLLLVLLGAGVYFAMLLLLGFR 510

Query: 1224 PLFLL 1228
                 
Sbjct: 511  VRGFA 515

Length = 518

>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only]

 Score = 41.5 bits (98), Expect = 0.003
 Identities = 99/425 (23%), Positives = 141/425 (33%), Gaps = 20/425 (4%)

Query: 855  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 914
            L+   L L LLL+ L+  LF    + LLL          L +LL  ++ P  L + L  L
Sbjct: 92   LVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSAL 151

Query: 915  LLFLLL------------FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 962
               +L              L  +  + L   + P F    L L    L+  L  LL  L 
Sbjct: 152  FGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLP 211

Query: 963  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1022
                  L +          L  FL L+L  LL   I     LL    +  FL       L
Sbjct: 212  ALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVSIS-QINLLIDTAIASFLAEGSVSWL 270

Query: 1023 FLLLLFLILPLFLLLFLFLLLLFLLLF-------LFLLLFLLLLFLILPLFLLLFLFLLL 1075
            +       LPL +       +L   L            L LL   L L L L L     L
Sbjct: 271  YYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGL 330

Query: 1076 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1135
            L L   +  LLF    F    + +           L+   L+  L  +F           
Sbjct: 331  LVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMK 390

Query: 1136 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1195
              ++  ++  L  LL +  L  +           +   LL +L     + L      LFL
Sbjct: 391  IAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFL 450

Query: 1196 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1255
            +L L L    +   L  LL L     +L   LL+ L +LLL +LL   +   +LLL    
Sbjct: 451  ILKLLLASAIMAAALLALLHLAQREWLLGGLLLIRLGVLLLLVLLGAGVYFAMLLLLGFR 510

Query: 1256 PLFLL 1260
                 
Sbjct: 511  VRGFA 515

Length = 518

>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only]

 Score = 41.5 bits (98), Expect = 0.003
 Identities = 99/425 (23%), Positives = 141/425 (33%), Gaps = 20/425 (4%)

Query: 887  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 946
            L+   L L LLL+ L+  LF    + LLL          L +LL  ++ P  L + L  L
Sbjct: 92   LVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSAL 151

Query: 947  LLFLLL------------FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 994
               +L              L  +  + L   + P F    L L    L+  L  LL  L 
Sbjct: 152  FGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLP 211

Query: 995  LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1054
                  L +          L  FL L+L  LL   I     LL    +  FL       L
Sbjct: 212  ALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVSIS-QINLLIDTAIASFLAEGSVSWL 270

Query: 1055 FLLLLFLILPLFLLLFLFLLLLFLLLF-------LFLLLFLLLLFLILPLFLLLFLFLLL 1107
            +       LPL +       +L   L            L LL   L L L L L     L
Sbjct: 271  YYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGL 330

Query: 1108 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1167
            L L   +  LLF    F    + +           L+   L+  L  +F           
Sbjct: 331  LVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMK 390

Query: 1168 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1227
              ++  ++  L  LL +  L  +           +   LL +L     + L      LFL
Sbjct: 391  IAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFL 450

Query: 1228 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1287
            +L L L    +   L  LL L     +L   LL+ L +LLL +LL   +   +LLL    
Sbjct: 451  ILKLLLASAIMAAALLALLHLAQREWLLGGLLLIRLGVLLLLVLLGAGVYFAMLLLLGFR 510

Query: 1288 PLFLL 1292
                 
Sbjct: 511  VRGFA 515

Length = 518

>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only]

 Score = 41.5 bits (98), Expect = 0.003
 Identities = 99/425 (23%), Positives = 141/425 (33%), Gaps = 20/425 (4%)

Query: 919  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLL 978
            L+   L L LLL+ L+  LF    + LLL          L +LL  ++ P  L + L  L
Sbjct: 92   LVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSAL 151

Query: 979  LLFLLL------------FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1026
               +L              L  +  + L   + P F    L L    L+  L  LL  L 
Sbjct: 152  FGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLP 211

Query: 1027 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1086
                  L +          L  FL L+L  LL   I     LL    +  FL       L
Sbjct: 212  ALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVSIS-QINLLIDTAIASFLAEGSVSWL 270

Query: 1087 FLLLLFLILPLFLLLFLFLLLLFLLLF-------LFLLLFLLLLFLILPLFLLLFLFLLL 1139
            +       LPL +       +L   L            L LL   L L L L L     L
Sbjct: 271  YYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGL 330

Query: 1140 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1199
            L L   +  LLF    F    + +           L+   L+  L  +F           
Sbjct: 331  LVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMK 390

Query: 1200 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1259
              ++  ++  L  LL +  L  +           +   LL +L     + L      LFL
Sbjct: 391  IAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFL 450

Query: 1260 LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 1319
            +L L L    +   L  LL L     +L   LL+ L +LLL +LL   +   +LLL    
Sbjct: 451  ILKLLLASAIMAAALLALLHLAQREWLLGGLLLIRLGVLLLLVLLGAGVYFAMLLLLGFR 510

Query: 1320 PLFLL 1324
                 
Sbjct: 511  VRGFA 515

Length = 518

>gnl|CDD|218818 pfam05940, NnrS, NnrS protein

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 79/285 (27%), Positives = 96/285 (33%), Gaps = 40/285 (14%)

Query: 1096 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLF----LLLFLFLLLLFLLLFLF---- 1147
            P FLL  LF  L  LL  L L   L L     PL+     +LF F     +  FL     
Sbjct: 11   PFFLLGALFAALAVLLWLLALSGGLPLPPAGPPLWWHAHEMLFGFAGA-IVAGFLLTAVP 69

Query: 1148 ----------LLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL 1197
                        L  L+   +      L   LL L+L   L L     L  L+    +  
Sbjct: 70   NWTGRPPIRGKPLAALVALWLAGRLAFLLGGLLPLWLAALLDLAFLPALAALLAREIIRA 129

Query: 1198 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1257
              +  L F+ L L LL    LLF +  L   L L L  L L L L  LL  L+   ++P 
Sbjct: 130  RNWRNLFFVPL-LLLLGLANLLFHLALLGGDLALALHGLRLGLLLVALLISLIGGRVIPF 188

Query: 1258 FL----------LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF-- 1305
            F                  L    L L LL +LL     L   L L    L L  L    
Sbjct: 189  FTRNWLPGAKPRPFPWLDRLALAALLLALLAWLLGPPSALTGALALAAGALHLVRLARWR 248

Query: 1306 --------LFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLL 1342
                    L   L L  L+L L L LL    L L+      L  L
Sbjct: 249  GWRTLRVPLLWSLHLAYLWLPLGLLLLGLAALGLVLPGSAALHAL 293

This family consists of several bacterial NnrS like proteins. NnrS is a putative heme-Cu protein (NnrS) and a member of the short-chain dehydrogenase family. Expression of nnrS is dependent on the transcriptional regulator NnrR, which also regulates expression of genes required for the reduction of nitrite to nitrous oxide, including nirK and nor. NnrS is a haem- and copper-containing membrane protein. Genes encoding putative orthologues of NnrS are sometimes but not always found in bacteria encoding nitrite and/or nitric oxide reductase. Length = 379

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 779 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 838
           +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7   ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 839 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 898
           L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67  LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 899 LFLILPLFLLLFLFLL 914
             L   L LLL LFL 
Sbjct: 127 GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 811 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 870
           +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7   ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 871 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 930
           L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67  LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 931 LFLILPLFLLLFLFLL 946
             L   L LLL LFL 
Sbjct: 127 GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 843 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 902
           +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7   ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 903 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 962
           L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67  LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 963 LFLILPLFLLLFLFLL 978
             L   L LLL LFL 
Sbjct: 127 GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 875  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 934
            +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7    ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 935  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 994
            L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67   LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 995  LFLILPLFLLLFLFLL 1010
              L   L LLL LFL 
Sbjct: 127  GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 907  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 966
            +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7    ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 967  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1026
            L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67   LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 1027 LFLILPLFLLLFLFLL 1042
              L   L LLL LFL 
Sbjct: 127  GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 939  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 998
            +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7    ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 999  LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1058
            L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67   LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 1059 LFLILPLFLLLFLFLL 1074
              L   L LLL LFL 
Sbjct: 127  GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 971  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1030
            +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7    ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 1031 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1090
            L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67   LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 1091 LFLILPLFLLLFLFLL 1106
              L   L LLL LFL 
Sbjct: 127  GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 1003 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1062
            +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7    ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 1063 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1122
            L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67   LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 1123 LFLILPLFLLLFLFLL 1138
              L   L LLL LFL 
Sbjct: 127  GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 1035 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1094
            +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7    ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 1095 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1154
            L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67   LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 1155 LFLILPLFLLLFLFLL 1170
              L   L LLL LFL 
Sbjct: 127  GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 1067 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1126
            +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7    ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 1127 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1186
            L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67   LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 1187 LFLILPLFLLLFLFLL 1202
              L   L LLL LFL 
Sbjct: 127  GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 1099 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1158
            +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7    ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 1159 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1218
            L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67   LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 1219 LFLILPLFLLLFLFLL 1234
              L   L LLL LFL 
Sbjct: 127  GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 1131 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1190
            +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7    ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 1191 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1250
            L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67   LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 1251 LFLILPLFLLLFLFLL 1266
              L   L LLL LFL 
Sbjct: 127  GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 1163 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1222
            +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7    ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 1223 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1282
            L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67   LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 1283 LFLILPLFLLLFLFLL 1298
              L   L LLL LFL 
Sbjct: 127  GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism]

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 42/136 (30%), Positives = 58/136 (42%)

Query: 1195 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLI 1254
            +   + L+L  L L +  L F LL+ L+  L +L         +L    +L   + L L+
Sbjct: 7    ITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV 66

Query: 1255 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1314
            L     L        L   L  LL L+LL +I  L   LF    LL++ + L  LL   L
Sbjct: 67   LLDGRRLLGDGKETLLGFLLGFLLGLVLLGVIYYLSDSLFKLFGLLYVGVGLLALLPFRL 126

Query: 1315 LFLILPLFLLLFLFLL 1330
              L   L LLL LFL 
Sbjct: 127  GVLYSGLILLLLLFLG 142

Length = 265

>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed

 Score = 41.3 bits (98), Expect = 0.003
 Identities = 45/169 (26%), Positives = 63/169 (37%), Gaps = 26/169 (15%)

Query: 788 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF-------LFLLLFLLLLFLILP 840
              LL   ++L+     L   L  +L         ++F       LFLLL L  L  +LP
Sbjct: 36  AASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLSLFLLLLLEALLALLP 95

Query: 841 LFLLLFLFLLLLFLLLFLFLLLFLLLLF---LILPL--------------FLLLFLFLLL 883
           + LLL L  LL  +L    L     L      + PL               L   L +LL
Sbjct: 96  ILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLL 155

Query: 884 LFLLLFLFLLLFL--LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 930
           +  + +  L   L  LL     PL   L   L L+  LL L +L  L++
Sbjct: 156 VGGVAYFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVI 204

Length = 359

>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed

 Score = 41.3 bits (98), Expect = 0.003
 Identities = 45/169 (26%), Positives = 63/169 (37%), Gaps = 26/169 (15%)

Query: 884  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF-------LFLLLFLLLLFLILP 936
               LL   ++L+     L   L  +L         ++F       LFLLL L  L  +LP
Sbjct: 36   AASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLSLFLLLLLEALLALLP 95

Query: 937  LFLLLFLFLLLLFLLLFLFLLLFLLLLF---LILPL--------------FLLLFLFLLL 979
            + LLL L  LL  +L    L     L      + PL               L   L +LL
Sbjct: 96   ILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLL 155

Query: 980  LFLLLFLFLLLFL--LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1026
            +  + +  L   L  LL     PL   L   L L+  LL L +L  L++
Sbjct: 156  VGGVAYFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVI 204

Length = 359

>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed

 Score = 41.3 bits (98), Expect = 0.003
 Identities = 45/169 (26%), Positives = 63/169 (37%), Gaps = 26/169 (15%)

Query: 980  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF-------LFLLLFLLLLFLILP 1032
               LL   ++L+     L   L  +L         ++F       LFLLL L  L  +LP
Sbjct: 36   AASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLSLFLLLLLEALLALLP 95

Query: 1033 LFLLLFLFLLLLFLLLFLFLLLFLLLLF---LILPL--------------FLLLFLFLLL 1075
            + LLL L  LL  +L    L     L      + PL               L   L +LL
Sbjct: 96   ILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLL 155

Query: 1076 LFLLLFLFLLLFL--LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1122
            +  + +  L   L  LL     PL   L   L L+  LL L +L  L++
Sbjct: 156  VGGVAYFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVI 204

Length = 359

>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed

 Score = 41.3 bits (98), Expect = 0.003
 Identities = 45/169 (26%), Positives = 63/169 (37%), Gaps = 26/169 (15%)

Query: 1076 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF-------LFLLLFLLLLFLILP 1128
               LL   ++L+     L   L  +L         ++F       LFLLL L  L  +LP
Sbjct: 36   AASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLSLFLLLLLEALLALLP 95

Query: 1129 LFLLLFLFLLLLFLLLFLFLLLFLLLLF---LILPL--------------FLLLFLFLLL 1171
            + LLL L  LL  +L    L     L      + PL               L   L +LL
Sbjct: 96   ILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLL 155

Query: 1172 LFLLLFLFLLLFL--LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1218
            +  + +  L   L  LL     PL   L   L L+  LL L +L  L++
Sbjct: 156  VGGVAYFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVI 204

Length = 359

>gnl|CDD|226365 COG3846, TrbL, Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion]

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 1219 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1278
            +F I  + L   + +L  FLL   F  L +      L  F+LL  F L L  L      L
Sbjct: 157  IFFINAIILAHVVVILWFFLLAVQFFFLLVEFWLTTLAGFILLG-FGLSLETLFLAERFL 215

Query: 1279 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLL 1338
              ++      + L L + +  LFL+      L   +  +I     L  L LL LF +   
Sbjct: 216  KTVISVGEKLMALALIIGIGSLFLIQQTAGFLNSSVTKIISLAIYLASLVLLALFNYGPP 275

Query: 1339 LF 1340
            + 
Sbjct: 276  IA 277

Length = 452

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 806 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 857
           + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7   LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 838 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 889
           + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7   LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 870 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 921
           + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7   LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 902 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 953
           + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7   LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 934 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 985
           + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7   LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 966  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1017
            + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 998  ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1049
            + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1030 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1081
            + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1062 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1113
            + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1094 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1145
            + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1126 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1177
            + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1158 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1209
            + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1190 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1241
            + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1222 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1273
            + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.8 bits (99), Expect = 0.003
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1254 ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLF 1305
            + PL  +L LFL L +L L+  L        L+  LF L  L  L+L L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPEWRWALLV--LFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 785 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 836
           L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7   LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 817 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 868
           L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7   LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 849 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 900
           L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7   LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 881 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 932
           L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7   LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 913 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 964
           L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7   LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 945 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 996
           L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7   LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 977  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1028
            L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1009 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1060
            L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1041 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1092
            L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1073 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1124
            L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1105 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1156
            L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1137 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1188
            L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1169 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1220
            L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1201 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1252
            L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1233 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1284
            L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1265 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1316
            L  L  +L LFL L  L L+ +LP        LL+LF L  L  L+  L  F
Sbjct: 7    LWPLLSVLALFLALSWLGLWDLLPPE--WRWALLVLFALAALAALVLGLRRF 56

Length = 820

>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional

 Score = 40.6 bits (96), Expect = 0.004
 Identities = 66/222 (29%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 777 SFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 836
              LLF F    FL+L + + +     ++      L    L+       L  LL LL  F
Sbjct: 52  LLFLLFSFGYFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFF 111

Query: 837 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 896
                FLLLF  L+  F +  L     LL+L        L+  F    F + FLF   FL
Sbjct: 112 SKNFFFLLLFGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFYYFL 171

Query: 897 LLLFLILPL-----FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLL 951
           L+LFLI           +    LL+F+ L   +  F+ +  L   L +L F  L LLFL+
Sbjct: 172 LMLFLIPKFNNVNKLNFVSWETLLVFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLM 231

Query: 952 LFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLL 993
               L L   L+ L   LFL+LF +    F      +LL L+
Sbjct: 232 FLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273

Length = 273

>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane protein

 Score = 41.1 bits (97), Expect = 0.004
 Identities = 54/265 (20%), Positives = 98/265 (36%), Gaps = 27/265 (10%)

Query: 762 ISVLPNAIITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF 821
                N  +        +LL + ++ L L++  F          ++    +  + + +L 
Sbjct: 16  AIQSVNLNLWGISTTLIVLLLILIIFLILIIIYFWKKVKKRYRFLMRHKGVTIIVIFILL 75

Query: 822 LLLFLFLLLFLLLL-----------------------FLILPLFLLLFLFLLLLFLLLFL 858
           L+L L L+  L  L                       F   P  L L LF+  L+ L   
Sbjct: 76  LILQLILVTALHPLIGWDAGAVHTAATKSNESSISNYFSRNPNNLFLLLFMHFLYKLFGE 135

Query: 859 FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 918
              LF  ++ ++L     L L+  +  +       + L L  L+L L   + +     ++
Sbjct: 136 TSWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALSPYILIPYTDTWV 195

Query: 919 LLFLFLLLFLLLLFL----ILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 974
           L F+ L LFL  +      +     L  L  +LL +  F+     + ++ + + LFL L 
Sbjct: 196 LPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAIIFVIAIFIVLFLQLL 255

Query: 975 LFLLLLFLLLFLFLLLFLLLLFLIL 999
           L      +L F  ++L  LL F I 
Sbjct: 256 LENQKKKILKFTLVVLIFLLSFGIT 280

Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown. Length = 483

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 55/188 (29%), Positives = 78/188 (41%), Gaps = 17/188 (9%)

Query: 1191 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1250
            L L   L  +L    LLL + LLL   LL L+LPL +   +  LL  L   L LLL LLL
Sbjct: 1    LSLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLL 60

Query: 1251 LFLILPLFLLLFLFLLLLFLLLFLFLL---LFLLLLFLILPLF--------------LLL 1293
            L L+  +   L  +L        +  L   LF  LL L L  F               + 
Sbjct: 61   LALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVE 120

Query: 1294 FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSFSSSSSSSF 1353
             +  L+  +L+ +F  + LL+  L+L   L   L L+LL +  LL  +LS  +  S    
Sbjct: 121  AVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLS 180

Query: 1354 SYSSSSSS 1361
                 +  
Sbjct: 181  RRVREALG 188

Length = 567

>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 41.1 bits (97), Expect = 0.004
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 12/111 (10%)

Query: 1219 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL------------FLFLL 1266
              ++  L L+L    L L L   L   L+     L + +F+L              LF++
Sbjct: 1    ALILTDLLLVLVALALALLLRDELSASLWSGAQLLTICVFILFGLYRAVWRASVSDLFII 60

Query: 1267 LLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1317
            L  +L    + L        LP  ++L  +LLL  L+    LL   L   L
Sbjct: 61   LKAVLTSALVSLLFFSTRTDLPRSVVLVYWLLLFVLIGASRLLFRALRDAL 111

Length = 588

>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed

 Score = 40.9 bits (97), Expect = 0.004
 Identities = 42/169 (24%), Positives = 59/169 (34%), Gaps = 26/169 (15%)

Query: 852 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 911
              LL   ++L+     L   L  +L         ++F    +  L L L+L   L L  
Sbjct: 36  AASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLSLFLLLLLEALLALLP 95

Query: 912 FLLLLFLLLFLFLLLFLLLLFLILPL------------------------FLLLFLFLLL 947
            LLLL L   L  +L   LLF    L                         L   L +LL
Sbjct: 96  ILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLL 155

Query: 948 LFLLLFLFLLLFL--LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 994
           +  + +  L   L  LL     PL   L   L L+  LL L +L  L++
Sbjct: 156 VGGVAYFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVI 204

Length = 359

>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed

 Score = 40.9 bits (97), Expect = 0.004
 Identities = 42/169 (24%), Positives = 59/169 (34%), Gaps = 26/169 (15%)

Query: 948  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1007
               LL   ++L+     L   L  +L         ++F    +  L L L+L   L L  
Sbjct: 36   AASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLSLFLLLLLEALLALLP 95

Query: 1008 FLLLLFLLLFLFLLLFLLLLFLILPL------------------------FLLLFLFLLL 1043
             LLLL L   L  +L   LLF    L                         L   L +LL
Sbjct: 96   ILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLL 155

Query: 1044 LFLLLFLFLLLFL--LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1090
            +  + +  L   L  LL     PL   L   L L+  LL L +L  L++
Sbjct: 156  VGGVAYFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVI 204

Length = 359

>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed

 Score = 40.9 bits (97), Expect = 0.004
 Identities = 42/169 (24%), Positives = 59/169 (34%), Gaps = 26/169 (15%)

Query: 1044 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1103
               LL   ++L+     L   L  +L         ++F    +  L L L+L   L L  
Sbjct: 36   AASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLSLFLLLLLEALLALLP 95

Query: 1104 FLLLLFLLLFLFLLLFLLLLFLILPL------------------------FLLLFLFLLL 1139
             LLLL L   L  +L   LLF    L                         L   L +LL
Sbjct: 96   ILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLL 155

Query: 1140 LFLLLFLFLLLFL--LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1186
            +  + +  L   L  LL     PL   L   L L+  LL L +L  L++
Sbjct: 156  VGGVAYFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVI 204

Length = 359

>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed

 Score = 40.9 bits (97), Expect = 0.004
 Identities = 42/169 (24%), Positives = 59/169 (34%), Gaps = 26/169 (15%)

Query: 1140 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1199
               LL   ++L+     L   L  +L         ++F    +  L L L+L   L L  
Sbjct: 36   AASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLSLFLLLLLEALLALLP 95

Query: 1200 FLLLLFLLLFLFLLLFLLLLFLILPL------------------------FLLLFLFLLL 1235
             LLLL L   L  +L   LLF    L                         L   L +LL
Sbjct: 96   ILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLL 155

Query: 1236 LFLLLFLFLLLFL--LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1282
            +  + +  L   L  LL     PL   L   L L+  LL L +L  L++
Sbjct: 156  VGGVAYFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVI 204

Length = 359

>gnl|CDD|220468 pfam09913, DUF2142, Predicted membrane protein (DUF2142)

 Score = 41.2 bits (97), Expect = 0.004
 Identities = 64/261 (24%), Positives = 97/261 (37%), Gaps = 12/261 (4%)

Query: 769  IITQSDAISFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 828
            I+  S      L  LF LLL+  L  F +        + P    L L + LL + LF   
Sbjct: 112  ILGLSVGGMVYLGRLFNLLLYAALVYFAIK-------LAPFGKALLLLVALLPMALFQAA 164

Query: 829  -----LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLL 883
                  +   L FL++ L L L     +   LL L LL  +LL     P  LL  L LL+
Sbjct: 165  SLSPDGMIFALAFLLIALLLRLDESKKITRRLLILLLLASVLLALSKPPYVLLALLALLI 224

Query: 884  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 943
                     L+  +LL  +  + + LFL  +    L+            L   L   L  
Sbjct: 225  PARKFSRRRLIGAILLAALFVIGIALFLRTVQSAPLIGGGATNVDFSAQLGYLLAHPLDY 284

Query: 944  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1003
              L +  +L L  +L    +   L          L    ++ L LL F  L  +   L  
Sbjct: 285  VRLFIRNVLSLPSVLAGQFISGGLGWLDTPLPSWLYFIAIVALILLAFAALGAISKRLKR 344

Query: 1004 LLFLFLLLLFLLLFLFLLLFL 1024
             +   LL+L +++ + L L+L
Sbjct: 345  KILSLLLVLVIVILIPLALYL 365

This domain, found in various hypothetical prokaryotic proteins, has no known function. Length = 390

>gnl|CDD|237042 PRK12291, PRK12291, apolipoprotein N-acyltransferase; Reviewed

 Score = 41.1 bits (97), Expect = 0.004
 Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 4/185 (2%)

Query: 825  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL-ILPLFLLLFLFLLL 883
                L    L+F I+  FL+  LF   ++L  F   +   L   L +L L+LLL      
Sbjct: 1    MFKKLRTNFLIFFIIKGFLIAILFSNFIYLSFFENYISIFLSSLLALLGLYLLLKSPRNS 60

Query: 884  LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 943
             F   F   +L+   + L    + L +L  L++ L+  ++ LLF LLLFL  P   LL L
Sbjct: 61   AFASGFFVGILWFYWIGLSFRYYDLTYLIPLIIILIGLVYGLLFYLLLFLKNPYLRLLLL 120

Query: 944  FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1003
            F  L F+  F F  L   + F  +  +  +    L L  L  +FL       + I+ + L
Sbjct: 121  F-GLSFIHPFGFDWLNPEIFF--VYSYFDVSKLSLALIFLAAIFLYKKYKKKYKIIGVLL 177

Query: 1004 LLFLF 1008
            LLF  
Sbjct: 178  LLFAL 182

Length = 418

>gnl|CDD|237042 PRK12291, PRK12291, apolipoprotein N-acyltransferase; Reviewed

 Score = 41.1 bits (97), Expect = 0.004
 Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 4/185 (2%)

Query: 953  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL-ILPLFLLLFLFLLL 1011
                L    L+F I+  FL+  LF   ++L  F   +   L   L +L L+LLL      
Sbjct: 1    MFKKLRTNFLIFFIIKGFLIAILFSNFIYLSFFENYISIFLSSLLALLGLYLLLKSPRNS 60

Query: 1012 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1071
             F   F   +L+   + L    + L +L  L++ L+  ++ LLF LLLFL  P   LL L
Sbjct: 61   AFASGFFVGILWFYWIGLSFRYYDLTYLIPLIIILIGLVYGLLFYLLLFLKNPYLRLLLL 120

Query: 1072 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1131
            F  L F+  F F  L   + F  +  +  +    L L  L  +FL       + I+ + L
Sbjct: 121  F-GLSFIHPFGFDWLNPEIFF--VYSYFDVSKLSLALIFLAAIFLYKKYKKKYKIIGVLL 177

Query: 1132 LLFLF 1136
            LLF  
Sbjct: 178  LLFAL 182

Length = 418

>gnl|CDD|237042 PRK12291, PRK12291, apolipoprotein N-acyltransferase; Reviewed

 Score = 41.1 bits (97), Expect = 0.004
 Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 4/185 (2%)

Query: 1081 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL-ILPLFLLLFLFLLL 1139
                L    L+F I+  FL+  LF   ++L  F   +   L   L +L L+LLL      
Sbjct: 1    MFKKLRTNFLIFFIIKGFLIAILFSNFIYLSFFENYISIFLSSLLALLGLYLLLKSPRNS 60

Query: 1140 LFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFL 1199
             F   F   +L+   + L    + L +L  L++ L+  ++ LLF LLLFL  P   LL L
Sbjct: 61   AFASGFFVGILWFYWIGLSFRYYDLTYLIPLIIILIGLVYGLLFYLLLFLKNPYLRLLLL 120

Query: 1200 FLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFL 1259
            F  L F+  F F  L   + F  +  +  +    L L  L  +FL       + I+ + L
Sbjct: 121  F-GLSFIHPFGFDWLNPEIFF--VYSYFDVSKLSLALIFLAAIFLYKKYKKKYKIIGVLL 177

Query: 1260 LLFLF 1264
            LLF  
Sbjct: 178  LLFAL 182

Length = 418

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (96), Expect = 0.004
 Identities = 60/255 (23%), Positives = 92/255 (36%), Gaps = 15/255 (5%)

Query: 810  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 869
            F+L  L  L+LF L  L  L     ++  L +   L    + +  L  + LL FL+   L
Sbjct: 3    FILYVLASLVLFGLSVLLSLYSSATVYSALVMTSQLSPVHITI-GLNVILLLFFLIANAL 61

Query: 870  ILPLFLLLFLFLLLLF---LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 926
               LF  L  F L L    L + L  +L  + +F     F    L   LLF  +F ++L 
Sbjct: 62   KTLLFGSLRTFELELLYEQLWITLTEILLAISVFREAISFSFFMLLSTLLFAKVFHWILS 121

Query: 927  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 986
            F      I        +F         L +L   L+   I     L+    L LF+  F 
Sbjct: 122  FRTERLQIQSTDQRFHIFSRFSCAYFLLSILDASLIYLCISSE-HLIDKSTLFLFVCEFS 180

Query: 987  FLLLFLLLLFLILPLFLL----------LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1036
             LLL L      L ++             +LF L +       L   LL ++    + + 
Sbjct: 181  VLLLNLTSEANKLCVYNYEARDDDDERSTYLFRLEVCYDGLTLLAYSLLFMYQFPYVRVP 240

Query: 1037 LFLFLLLLFLLLFLF 1051
            ++L   +      LF
Sbjct: 241  IYLIRQMYTCFYALF 255

Length = 491

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (96), Expect = 0.004
 Identities = 60/255 (23%), Positives = 92/255 (36%), Gaps = 15/255 (5%)

Query: 874  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 933
            F+L  L  L+LF L  L  L     ++  L +   L    + +  L  + LL FL+   L
Sbjct: 3    FILYVLASLVLFGLSVLLSLYSSATVYSALVMTSQLSPVHITI-GLNVILLLFFLIANAL 61

Query: 934  ILPLFLLLFLFLLLLF---LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 990
               LF  L  F L L    L + L  +L  + +F     F    L   LLF  +F ++L 
Sbjct: 62   KTLLFGSLRTFELELLYEQLWITLTEILLAISVFREAISFSFFMLLSTLLFAKVFHWILS 121

Query: 991  FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1050
            F      I        +F         L +L   L+   I     L+    L LF+  F 
Sbjct: 122  FRTERLQIQSTDQRFHIFSRFSCAYFLLSILDASLIYLCISSE-HLIDKSTLFLFVCEFS 180

Query: 1051 FLLLFLLLLFLILPLFLL----------LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1100
             LLL L      L ++             +LF L +       L   LL ++    + + 
Sbjct: 181  VLLLNLTSEANKLCVYNYEARDDDDERSTYLFRLEVCYDGLTLLAYSLLFMYQFPYVRVP 240

Query: 1101 LFLFLLLLFLLLFLF 1115
            ++L   +      LF
Sbjct: 241  IYLIRQMYTCFYALF 255

Length = 491

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (96), Expect = 0.004
 Identities = 60/255 (23%), Positives = 92/255 (36%), Gaps = 15/255 (5%)

Query: 938  FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 997
            F+L  L  L+LF L  L  L     ++  L +   L    + +  L  + LL FL+   L
Sbjct: 3    FILYVLASLVLFGLSVLLSLYSSATVYSALVMTSQLSPVHITI-GLNVILLLFFLIANAL 61

Query: 998  ILPLFLLLFLFLLLLF---LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1054
               LF  L  F L L    L + L  +L  + +F     F    L   LLF  +F ++L 
Sbjct: 62   KTLLFGSLRTFELELLYEQLWITLTEILLAISVFREAISFSFFMLLSTLLFAKVFHWILS 121

Query: 1055 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1114
            F      I        +F         L +L   L+   I     L+    L LF+  F 
Sbjct: 122  FRTERLQIQSTDQRFHIFSRFSCAYFLLSILDASLIYLCISSE-HLIDKSTLFLFVCEFS 180

Query: 1115 FLLLFLLLLFLILPLFLL----------LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1164
             LLL L      L ++             +LF L +       L   LL ++    + + 
Sbjct: 181  VLLLNLTSEANKLCVYNYEARDDDDERSTYLFRLEVCYDGLTLLAYSLLFMYQFPYVRVP 240

Query: 1165 LFLFLLLLFLLLFLF 1179
            ++L   +      LF
Sbjct: 241  IYLIRQMYTCFYALF 255

Length = 491

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (96), Expect = 0.004
 Identities = 60/255 (23%), Positives = 92/255 (36%), Gaps = 15/255 (5%)

Query: 1002 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1061
            F+L  L  L+LF L  L  L     ++  L +   L    + +  L  + LL FL+   L
Sbjct: 3    FILYVLASLVLFGLSVLLSLYSSATVYSALVMTSQLSPVHITI-GLNVILLLFFLIANAL 61

Query: 1062 ILPLFLLLFLFLLLLF---LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1118
               LF  L  F L L    L + L  +L  + +F     F    L   LLF  +F ++L 
Sbjct: 62   KTLLFGSLRTFELELLYEQLWITLTEILLAISVFREAISFSFFMLLSTLLFAKVFHWILS 121

Query: 1119 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1178
            F      I        +F         L +L   L+   I     L+    L LF+  F 
Sbjct: 122  FRTERLQIQSTDQRFHIFSRFSCAYFLLSILDASLIYLCISSE-HLIDKSTLFLFVCEFS 180

Query: 1179 FLLLFLLLLFLILPLFLL----------LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1228
             LLL L      L ++             +LF L +       L   LL ++    + + 
Sbjct: 181  VLLLNLTSEANKLCVYNYEARDDDDERSTYLFRLEVCYDGLTLLAYSLLFMYQFPYVRVP 240

Query: 1229 LFLFLLLLFLLLFLF 1243
            ++L   +      LF
Sbjct: 241  IYLIRQMYTCFYALF 255

Length = 491

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (96), Expect = 0.004
 Identities = 60/255 (23%), Positives = 92/255 (36%), Gaps = 15/255 (5%)

Query: 1066 FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1125
            F+L  L  L+LF L  L  L     ++  L +   L    + +  L  + LL FL+   L
Sbjct: 3    FILYVLASLVLFGLSVLLSLYSSATVYSALVMTSQLSPVHITI-GLNVILLLFFLIANAL 61

Query: 1126 ILPLFLLLFLFLLLLF---LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1182
               LF  L  F L L    L + L  +L  + +F     F    L   LLF  +F ++L 
Sbjct: 62   KTLLFGSLRTFELELLYEQLWITLTEILLAISVFREAISFSFFMLLSTLLFAKVFHWILS 121

Query: 1183 FLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL 1242
            F      I        +F         L +L   L+   I     L+    L LF+  F 
Sbjct: 122  FRTERLQIQSTDQRFHIFSRFSCAYFLLSILDASLIYLCISSE-HLIDKSTLFLFVCEFS 180

Query: 1243 FLLLFLLLLFLILPLFLL----------LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1292
             LLL L      L ++             +LF L +       L   LL ++    + + 
Sbjct: 181  VLLLNLTSEANKLCVYNYEARDDDDERSTYLFRLEVCYDGLTLLAYSLLFMYQFPYVRVP 240

Query: 1293 LFLFLLLLFLLLFLF 1307
            ++L   +      LF
Sbjct: 241  IYLIRQMYTCFYALF 255

Length = 491

>gnl|CDD|219152 pfam06728, PIG-U, GPI transamidase subunit PIG-U

 Score = 40.7 bits (96), Expect = 0.004
 Identities = 88/308 (28%), Positives = 122/308 (39%), Gaps = 19/308 (6%)

Query: 808  PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF-------LLLLFLLLFLFL 860
            PL L L  FL      +   LL  L  L + L L+ +   +       L     L    L
Sbjct: 60   PLLLALLSFLNKKSAPILTSLLYILADLLIALLLYAIAKSYQKTTSELLKSPRDLRSSPL 119

Query: 861  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 920
            L+  + LF  L +   + L   +   LL L  LL  +    +L    L     L L+ LL
Sbjct: 120  LIAAIYLFNPLTILSCVSLSTTVFTNLLLLLSLLSAVKGNRLLSAISLALASYLSLYPLL 179

Query: 921  FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 980
             L  LL LL +           L   LL LLLFL  LL LLLL  ++      FL     
Sbjct: 180  LLPPLLLLLYIRFSKSSKSSSKLSKFLLILLLFLLTLLALLLLSFLI-TGSWDFLEATYG 238

Query: 981  FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF-- 1038
            F+L    L   L L +     F  +F    L FL +F      L     +LPL + L   
Sbjct: 239  FILTVSDLTPNLGLWWY---FFTEMFDHFRLFFLFVF-----QLHPFIYVLPLTIRLRKQ 290

Query: 1039 -LFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPL 1097
             LF L + L L      +  +  L L L LL     L  ++     +LL LL+  L+ P+
Sbjct: 291  PLFALFILLALIAVFKPYPTVGDLGLYLSLLPLFRHLFKYMRYPFLVLLTLLVALLLSPI 350

Query: 1098 FLLLFLFL 1105
            F  L+++L
Sbjct: 351  FYHLWIYL 358

Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the carboxyl-terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI. Length = 373

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1381
KOG1238|consensus	623		100.0
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	100.0
PRK02106	560	choline dehydrogenase; Validated	100.0
PLN02785	587	Protein HOTHEAD	100.0
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	100.0
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	100.0
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	100.0
PF05199	144	GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078	100.0
PRK07121	492	hypothetical protein; Validated	99.29
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.21
PRK08274	466	tricarballylate dehydrogenase; Validated	99.21
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.21
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.12
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.11
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.09
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.06
PRK06175	433	L-aspartate oxidase; Provisional	99.01
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.0
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.99
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.96
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.95
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.94
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.93
PRK08275	554	putative oxidoreductase; Provisional	98.93
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.93
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.89
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.89
PRK05257	494	malate:quinone oxidoreductase; Validated	98.89
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.87
PRK12839	572	hypothetical protein; Provisional	98.86
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.86
COG0579	429	Predicted dehydrogenase [General function predicti	98.85
PRK07395	553	L-aspartate oxidase; Provisional	98.84
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.83
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.83
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.82
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.82
PRK07804	541	L-aspartate oxidase; Provisional	98.81
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.81
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.81
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.8
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.79
PRK08071	510	L-aspartate oxidase; Provisional	98.79
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.79
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.78
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.78
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.76
PRK09077	536	L-aspartate oxidase; Provisional	98.76
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.75
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.74
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.74
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.74
PLN02815	594	L-aspartate oxidase	98.73
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.73
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.72
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.72
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.72
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.69
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.69
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.69
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.68
PRK07512	513	L-aspartate oxidase; Provisional	98.67
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.66
PRK10157	428	putative oxidoreductase FixC; Provisional	98.65
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.64
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.63
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.62
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.62
PLN02661	357	Putative thiazole synthesis	98.62
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.62
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.61
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.6
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.59
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.58
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.55
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.54
KOG1298|consensus	509		98.53
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.52
COG2081	408	Predicted flavoproteins [General function predicti	98.5
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.47
PRK10015	429	oxidoreductase; Provisional	98.46
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.45
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.45
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.39
PRK06185	407	hypothetical protein; Provisional	98.37
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.36
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.34
PRK08401	466	L-aspartate oxidase; Provisional	98.33
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.33
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.33
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.32
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.32
COG3573	552	Predicted oxidoreductase [General function predict	98.27
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.26
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.25
PLN02985	514	squalene monooxygenase	98.24
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.2
PRK07208	479	hypothetical protein; Provisional	98.19
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.17
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.17
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.16
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.15
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.08
KOG2404|consensus	477		98.07
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.01
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.0
PRK06126	545	hypothetical protein; Provisional	98.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.98
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.97
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.97
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.91
PRK07233	434	hypothetical protein; Provisional	97.91
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.9
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.87
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.85
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.81
PLN02612	567	phytoene desaturase	97.79
PRK08244	493	hypothetical protein; Provisional	97.78
KOG4254|consensus	561		97.77
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.77
PRK11445	351	putative oxidoreductase; Provisional	97.76
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.76
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.76
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.74
PLN02487	569	zeta-carotene desaturase	97.71
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.69
KOG0042|consensus	680		97.69
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.64
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.63
PRK10262	321	thioredoxin reductase; Provisional	97.53
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.51
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.47
KOG2415|consensus	621		97.46
PRK07538	413	hypothetical protein; Provisional	97.44
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.43
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.42
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.4
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.39
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.39
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.38
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	97.37
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.34
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.31
KOG2665|consensus	453		97.3
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.28
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.26
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.25
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.24
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.22
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.2
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.17
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.16
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.15
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.13
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.11
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.11
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.09
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.09
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.08
PLN02463	447	lycopene beta cyclase	97.07
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.06
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.04
PRK09126	392	hypothetical protein; Provisional	97.03
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.02
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.01
PRK06116	450	glutathione reductase; Validated	97.0
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	96.99
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.98
KOG3851|consensus	446		96.98
PRK06370	463	mercuric reductase; Validated	96.98
PTZ00058	561	glutathione reductase; Provisional	96.97
PRK06996	398	hypothetical protein; Provisional	96.97
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	96.97
PRK08013	400	oxidoreductase; Provisional	96.96
PRK07045	388	putative monooxygenase; Reviewed	96.96
PLN02529	738	lysine-specific histone demethylase 1	96.95
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.95
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	96.94
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	96.94
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	96.92
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	96.91
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.91
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.9
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.88
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	96.88
KOG2820|consensus	399		96.88
PRK14694	468	putative mercuric reductase; Provisional	96.87
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.87
PRK08132	547	FAD-dependent oxidoreductase; Provisional	96.85
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.85
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	96.84
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	96.82
KOG1399|consensus	448		96.8
PLN02697	529	lycopene epsilon cyclase	96.79
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	96.79
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.75
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	96.75
TIGR02053	463	MerA mercuric reductase. This model represents the	96.74
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	96.74
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.73
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.72
KOG0685|consensus	498		96.72
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	96.71
PRK13748	561	putative mercuric reductase; Provisional	96.7
PRK07190	487	hypothetical protein; Provisional	96.69
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	96.66
PTZ00367	567	squalene epoxidase; Provisional	96.64
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.63
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.59
PRK09897	534	hypothetical protein; Provisional	96.57
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	96.56
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.56
KOG2311|consensus	679		96.53
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.52
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.52
PLN02507	499	glutathione reductase	96.5
PRK06184	502	hypothetical protein; Provisional	96.47
PRK06847	375	hypothetical protein; Provisional	96.46
PLN02546	558	glutathione reductase	96.46
KOG2852|consensus	380		96.46
PRK07588	391	hypothetical protein; Provisional	96.4
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.4
KOG2853|consensus	509		96.39
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.39
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.38
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	96.37
PRK06753	373	hypothetical protein; Provisional	96.37
PRK06834	488	hypothetical protein; Provisional	96.36
PTZ00052	499	thioredoxin reductase; Provisional	96.34
KOG0029|consensus	501		96.28
PRK08294	634	phenol 2-monooxygenase; Provisional	96.24
PLN02576	496	protoporphyrinogen oxidase	96.24
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.24
PRK07236	386	hypothetical protein; Provisional	96.23
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.22
PRK11883	451	protoporphyrinogen oxidase; Reviewed	96.2
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	96.17
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.12
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	96.11
PRK14727	479	putative mercuric reductase; Provisional	96.1
PRK08163	396	salicylate hydroxylase; Provisional	96.03
PLN02268	435	probable polyamine oxidase	96.02
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	96.02
KOG3855|consensus	481		95.93
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	95.79
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.65
COG2907	447	Predicted NAD/FAD-binding protein [General functio	95.63
PRK05868	372	hypothetical protein; Validated	95.58
PRK07846	451	mycothione reductase; Reviewed	95.47
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	95.43
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	95.42
PRK12416	463	protoporphyrinogen oxidase; Provisional	95.37
PLN02676	487	polyamine oxidase	95.36
PLN02568	539	polyamine oxidase	95.35
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	95.3
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	95.27
KOG2844|consensus	856		95.16
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	95.07
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	95.06
KOG2960|consensus	328		95.02
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	94.89
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	94.86
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	94.85
KOG0405|consensus	478		94.81
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	94.75
PRK06475	400	salicylate hydroxylase; Provisional	94.74
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	94.73
PRK12831	464	putative oxidoreductase; Provisional	94.68
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	94.53
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	94.14
PRK07845	466	flavoprotein disulfide reductase; Reviewed	93.83
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	93.67
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.57
PLN02852	491	ferredoxin-NADP+ reductase	93.5
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	93.3
PRK12814	652	putative NADPH-dependent glutamate synthase small	93.09
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	93.02
PRK12770	352	putative glutamate synthase subunit beta; Provisio	92.93
PRK12779	944	putative bifunctional glutamate synthase subunit b	92.75
PLN02328	808	lysine-specific histone demethylase 1 homolog	92.62
PLN03000	881	amine oxidase	92.6
COG3349	485	Uncharacterized conserved protein [Function unknow	92.49
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	92.24
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	92.2
KOG2614|consensus	420		91.86
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	91.76
PRK13512	438	coenzyme A disulfide reductase; Provisional	91.69
KOG4716|consensus	503		91.68
PLN02976	1713	amine oxidase	91.63
PTZ00188	506	adrenodoxin reductase; Provisional	91.22
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	91.19
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	91.03
PRK13984	604	putative oxidoreductase; Provisional	90.24
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	89.38
KOG2403|consensus	642		89.21
KOG1335|consensus	506		87.98
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	87.81
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	87.12
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	86.89
COG0569	225	TrkA K+ transport systems, NAD-binding component [	86.8
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	86.54
KOG1276|consensus	491		84.64
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	83.83
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	82.44
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	82.33
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	82.17
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	81.31
KOG1439|consensus	440		80.41
KOG2755|consensus	334		80.37

>KOG1238|consensus

Probab=100.00  E-value=1.9e-131  Score=1165.89  Aligned_cols=558  Identities=36%  Similarity=0.549  Sum_probs=499.4

Q ss_pred             cCCCCCCcccC--CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCccccCCccccccCCcccCccccccc
Q psy11618        148 IYPPDMTPYVK--SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPS  225 (1381)
Q Consensus       148 ~~p~~~~~~~~--~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~~~iP~~~~~l~~s~~DW~Y~TePq  225 (1381)
                      +...++.++..  ..++|||||||||||||++|+||||+|++|||+||||++++...++|......+.+.+||+|+|+||
T Consensus        41 ~~~~~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps  120 (623)
T KOG1238|consen   41 DPESRPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPS  120 (623)
T ss_pred             CcccccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccC
Confidence            33344444444  5678999999999999999999999999999999999999888899977778888999999999999


Q ss_pred             ccccccCCCceeecccccccCccccccceEEecCCccchHHHhhcCCCCCChhhHHHHHHHhcccccCCcccCCCCCCCC
Q psy11618        226 QFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQ  305 (1381)
Q Consensus       226 ~~a~~gl~~r~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~  305 (1381)
                      +++|+++++++|+|||||++||||++|+|+|+||+++|||+|++.||+||+|++++|||+|+|+...++.+. .++||+.
T Consensus       121 ~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~-~~y~~~~  199 (623)
T KOG1238|consen  121 QHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPEL-TPYHGAG  199 (623)
T ss_pred             hhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCccc-CcccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999998877665 5699999


Q ss_pred             CCccccCCCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCc
Q psy11618        306 GYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRS  385 (1381)
Q Consensus       306 GPL~Vs~~p~~e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA  385 (1381)
                      ||..++..+++  ++..+++.++.+|+|.+.. |+||+. +.|++..+.++++|+|+|++++|++|+...|+|+|+..++
T Consensus       200 g~~~ve~~~~~--~~~~~~~~~ag~e~G~~~~-D~nG~~-~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~  275 (623)
T KOG1238|consen  200 GPLLVEAGVYP--NNLFTAFHRAGTEIGGSIF-DRNGER-HTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNA  275 (623)
T ss_pred             Ccceecccccc--CchhhHhHHhHHhcCCCcc-CCCCcc-ccchhhhhccccCCEEEEehhhhhhhhhccCccccccccc
Confidence            99999998888  8999999999999996544 999999 9999999999999999999999999998349999999999


Q ss_pred             EEEEEEec-CCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhcccc
Q psy11618        386 KVTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLN  463 (1381)
Q Consensus       386 ~VtRIlfd-~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDH  463 (1381)
                      .|+||.+| .+++|+||+++++.|++++++|+|||||||||||||||||+|||||++||+++|||+++|+| ||||||||
T Consensus       276 ~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH  355 (623)
T KOG1238|consen  276 AVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDH  355 (623)
T ss_pred             eEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccc
Confidence            99999999 78899999999833899999999999999999999999999999999999999999999999 99999999


Q ss_pred             ccCCceEEEecCCccccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccc
Q psy11618        464 AQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSA  543 (1381)
Q Consensus       464 p~v~~vvf~l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~  543 (1381)
                      +..+ +....+++++  .                                               ...+.          
T Consensus       356 ~~~~-~~~~~~~~~~--~-----------------------------------------------~~~~~----------  375 (623)
T KOG1238|consen  356 PMNP-GFVFSTNPVE--L-----------------------------------------------SLIRL----------  375 (623)
T ss_pred             cccc-eeeecCCCcc--c-----------------------------------------------ccccc----------
Confidence            9985 3333333321  0                                               00000          


Q ss_pred             cchhhhhhHHHHHHHHHcCCCCCccccccceEEEeecCCCC---CCCCeeeeeeccccccchhhhhhhhccccchhHHHH
Q psy11618        544 PLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNT---ARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTA  620 (1381)
Q Consensus       544 pl~~tv~s~~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~---~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~  620 (1381)
                            .......+|+..++||.++.+ .+..+|.+++.+.   ++||+|.++.+.+. ..+.....++..+   +++++
T Consensus       376 ------~~~~~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~-~~~~~~~~~~~~~---~~y~~  444 (623)
T KOG1238|consen  376 ------VGITTVGQYLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSL-SSDGLTALRKALG---EIYQA  444 (623)
T ss_pred             ------ccchHHHHHHHcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccc-cccchhhhhhhcc---hHHHH
Confidence                  013456789999999999877 7889999887654   89999988877665 3344444554444   66777


Q ss_pred             HhccCCCCCeEEEEEeecccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccC
Q psy11618        621 YVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLN  700 (1381)
Q Consensus       621 ~~~p~~~~~~~tI~v~Ll~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~p  700 (1381)
                      .+.+..+++.+.+...+++|+|||+++|+|+||.++|.|++||++||+|+++++||+|.+.|+.+|++|++++++++.++
T Consensus       445 ~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~  524 (623)
T KOG1238|consen  445 LFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKP  524 (623)
T ss_pred             hhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhcccc
Confidence            66666666778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHHHHHH
Q psy11618        701 LEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLL  780 (1381)
Q Consensus       701 lPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMI  780 (1381)
                      .|+|+.....||++|+|++|+.+.|.|||+|||||||+.||++|||+|+|||||+|||||||||||.+|++|||||||||
T Consensus       525 ~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MI  604 (623)
T KOG1238|consen  525 VPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMI  604 (623)
T ss_pred             CCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHH
Confidence            99999888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H
Q psy11618        781 L  781 (1381)
Q Consensus       781 A  781 (1381)
                      |
T Consensus       605 g  605 (623)
T KOG1238|consen  605 G  605 (623)
T ss_pred             H
Confidence            8

>TIGR01810 betA choline dehydrogenase

Probab=100.00  E-value=1.9e-103  Score=930.64  Aligned_cols=515  Identities=31%  Similarity=0.452  Sum_probs=416.3

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCC---CccccCCcccc-ccCCcccCcccccccccccccCCCceeec
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP---IHSRIPGMSSV-LSLSEFDHAYLAEPSQFAGLGVRNARIKI  239 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~---~~~~iP~~~~~-l~~s~~DW~Y~TePq~~a~~gl~~r~i~~  239 (1381)
                      ||||||||+|||++|+||||+++.||+|||||++..   ...+.|..+.. ..++.+||+|+++||++    .++|++.|
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~   76 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGH   76 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEee
Confidence            999999999999999999998778999999998532   33455543322 22345899999999974    46788999


Q ss_pred             ccccccCccccccceEEecCCccchHHHhh-cCCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccccCCCCCCC
Q psy11618        240 TAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN  318 (1381)
Q Consensus       240 pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~-lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~~e~  318 (1381)
                      +|||++||||+||+|+|.|++++|||+|++ .|++||+|||++|||+|+|+...++    .++||++||+++++++..  
T Consensus        77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~----~~~~g~~G~~~v~~~~~~--  150 (532)
T TIGR01810        77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE----KPYRGHDGPIKVRRGPAD--  150 (532)
T ss_pred             ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC----cccCCCCCCEEEecCCCC--
Confidence            999999999999999999999999999998 7999999999999999999886432    367999999999877665  


Q ss_pred             chHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeE
Q psy11618        319 NIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA  398 (1381)
Q Consensus       319 ~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RA  398 (1381)
                      ++..+.+.++++++|++..+|.|++. ..|++.++.++++|+|+|+..+|+++++ +|+|++|+++++|+||+++ ++||
T Consensus       151 ~~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~l~~a~-~r~nl~i~~~~~V~rI~~~-~~ra  227 (532)
T TIGR01810       151 NPLFQAFIEAGVEAGYNKTPDVNGFR-QEGFGPMDSTVHNGRRVSAARAYLHPAM-KRPNLEVQTRAFVTKINFE-GNRA  227 (532)
T ss_pred             CHHHHHHHHHHHHcCCCccCCCCCCC-ccceEEEEEEcCCCEEEcHHHHHhhhhc-cCCCeEEEeCCEEEEEEec-CCeE
Confidence            78899999999999999888988877 7788877777789999999999999987 7999999999999999998 7899


Q ss_pred             EEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhccccccCCceEEEecCCc
Q psy11618        399 TGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPL  477 (1381)
Q Consensus       399 tGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~~vvf~l~~~v  477 (1381)
                      +||++.+ +|++.++.++||||+||||++||||||+|||||+++|+++|||+++|+| ||||||||+.+ .+.++.+++.
T Consensus       228 ~GV~~~~-~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~  305 (532)
T TIGR01810       228 TGVEFKK-GGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQHACKQPV  305 (532)
T ss_pred             EEEEEEe-CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEEEecCCc
Confidence            9999987 5555667777999999999999999999999999999999999999999 99999999998 4778776543


Q ss_pred             cccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccccchhhhhhHHHHHH
Q psy11618        478 KRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFK  557 (1381)
Q Consensus       478 s~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~tv~s~~~~~e  557 (1381)
                      .  ..              +                    ..+            .               ........+
T Consensus       306 ~--~~--------------~--------------------~~~------------~---------------~~~~~~~~~  322 (532)
T TIGR01810       306 S--LY--------------P--------------------SLN------------W---------------LKQPFIGAQ  322 (532)
T ss_pred             c--cc--------------c--------------------ccc------------h---------------hhhhHHHHH
Confidence            1  00              0                    000            0               000111224


Q ss_pred             HHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhHHHHHhccCCCCCeEEEEEee
Q psy11618        558 YLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSL  637 (1381)
Q Consensus       558 Yl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~tI~v~L  637 (1381)
                      |...+.|+..... .+..++.++......|++++...+.... .+         +          ........+++....
T Consensus       323 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~---------~----------~~~~~~~~~~~~~~~  381 (532)
T TIGR01810       323 WLFGRKGAGASNH-FEGGGFVRSNDDVDYPNIQYHFLPVAIR-YD---------G----------TKAPKAHGFQVHVGP  381 (532)
T ss_pred             HHhcCCCCccccc-cceeEEEecCCCCCCCCeEEEEEeeeec-cC---------C----------CCCCCCCcEEEEEee
Confidence            5445555554322 2334454433222457776554331110 00         0          000011235666788


Q ss_pred             cccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccCCccCCCCCCCCchhHHH
Q psy11618        638 VNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTC  717 (1381)
Q Consensus       638 l~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~~SDEeIe~  717 (1381)
                      ++|+|||+|+|+|+||.+.|.||+||++||.|++.+++++|+++|++++++++++..++.   .|+   .+.++||+|++
T Consensus       382 ~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~---~~~~~d~~~~~  455 (532)
T TIGR01810       382 MYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEI---SPG---PEVQTDEEIDE  455 (532)
T ss_pred             cCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhcccccc---CCC---CCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999988888654433   122   34578999999


Q ss_pred             HHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHHHHHHHHH
Q psy11618        718 YIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLFL  783 (1381)
Q Consensus       718 yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMIA~l  783 (1381)
                      |+|++..|.||++||||||+++|++||||+++|||||+|||||||||||++|++|||+|+||||-=
T Consensus       456 ~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaer  521 (532)
T TIGR01810       456 FVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEK  521 (532)
T ss_pred             HHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHH
Confidence            999999999999999999997778899999999999999999999999999999999999999853

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK02106 choline dehydrogenase; Validated

Probab=100.00  E-value=1.9e-101  Score=919.15  Aligned_cols=517  Identities=32%  Similarity=0.490  Sum_probs=416.1

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC---CCccccCCccccc-cCCcccCcccccccccccccCCCc
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSSVL-SLSEFDHAYLAEPSQFAGLGVRNA  235 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~---~~~~~iP~~~~~l-~~s~~DW~Y~TePq~~a~~gl~~r  235 (1381)
                      .++|||||||||+|||++|+||||++|+||+|||||++.   +...++|...... .++++||+|+++||++    .+++
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~   78 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNR   78 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCC
Confidence            456999999999999999999999889999999999753   2334556533222 2346899999999874    4678


Q ss_pred             eeecccccccCccccccceEEecCCccchHHHhhc-CCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccccCC-
Q psy11618        236 RIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLF-  313 (1381)
Q Consensus       236 ~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~l-Gn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~-  313 (1381)
                      ++.++|||++||||+||+|+|.|+++.|||+|++. |++||+|||++|||+|+|+...++    .++||.+||++++++ 
T Consensus        79 ~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~----~~~~g~~gp~~~~~~~  154 (560)
T PRK02106         79 RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGE----DDYRGGDGPLSVTRGK  154 (560)
T ss_pred             eeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCC----ccccCCCCCEEEeCCC
Confidence            89999999999999999999999999999999987 899999999999999999987321    357999999999865 


Q ss_pred             CCCCCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEec
Q psy11618        314 KNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN  393 (1381)
Q Consensus       314 p~~e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd  393 (1381)
                      ...  ++..+.+.+|++++|++..+|.|+++ ..|++.++.++++|+|+|++++|++|+. +|+|++|+++|+|+||++|
T Consensus       155 ~~~--~~~~~~~~~a~~~lG~~~~~~~~~~~-~~g~~~~~~~~~~g~R~s~~~~~l~~a~-~~~nl~i~~~a~V~rI~~~  230 (560)
T PRK02106        155 PGT--NPLFQAFVEAGVQAGYPRTDDLNGYQ-QEGFGPMDRTVTNGRRWSAARAYLDPAL-KRPNLTIVTHALTDRILFE  230 (560)
T ss_pred             CCC--CHHHHHHHHHHHHcCCCcCCCCCCCC-CceeEEEeeecCCCEEEChHHHhhcccc-CCCCcEEEcCCEEEEEEEe
Confidence            334  78899999999999999888998887 7888877777889999999999999987 7999999999999999998


Q ss_pred             CCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhccccccCCceEEE
Q psy11618        394 DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMA  472 (1381)
Q Consensus       394 ~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~~vvf~  472 (1381)
                       ++||+||++.+ +++++++.++||||+||||++||||||+|||||+++|+++|||+++|+| ||||||||+.. .+.++
T Consensus       231 -~~~a~GV~~~~-~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~  307 (560)
T PRK02106        231 -GKRAVGVEYER-GGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV-YIQYE  307 (560)
T ss_pred             -CCeEEEEEEEe-CCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc-eEEEE
Confidence             78999999998 4455566667899999999999999999999999999999999999999 99999999998 47777


Q ss_pred             ecCCccccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccccchhhhhhH
Q psy11618        473 FSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQ  552 (1381)
Q Consensus       473 l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~tv~s~  552 (1381)
                      .+++..  ..                             +.     ..            .       +        ...
T Consensus       308 ~~~~~~--~~-----------------------------~~-----~~------------~-------~--------~~~  324 (560)
T PRK02106        308 CKQPVS--LY-----------------------------PA-----LK------------W-------W--------NKP  324 (560)
T ss_pred             eCCCcc--cc-----------------------------cc-----cc------------h-------h--------hhh
Confidence            765431  00                             00     00            0       0        001


Q ss_pred             HHHHHHHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhHHHHHhccCCCCCeEE
Q psy11618        553 EMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGV  632 (1381)
Q Consensus       553 ~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~t  632 (1381)
                      ....+|..+++|+.+..+ .+..++.+.......|+++....+...         + ..+          ........++
T Consensus       325 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~---------~-~~~----------~~~~~~~~~~  383 (560)
T PRK02106        325 KIGAEWLFTGTGLGASNH-FEAGGFIRSRAGVDWPNIQYHFLPVAI---------R-YDG----------SNAVKGHGFQ  383 (560)
T ss_pred             HHHHHHHhcCCCCccccc-cceeeEEecCCCCCCCCeEEEEeeccc---------c-ccC----------CCCCCCCeEE
Confidence            112245445666665432 233455544322245776654322111         0 000          0001123466


Q ss_pred             EEEeecccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccCCccCCCCCCCCc
Q psy11618        633 ISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRST  712 (1381)
Q Consensus       633 I~v~Ll~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~~SD  712 (1381)
                      +.+..++|+|||+|+|+|+||.+.|.||+||++||.|++.+++++|+++|++++++++++..++.   .|+   .+..+|
T Consensus       384 ~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~---~~~~~~  457 (560)
T PRK02106        384 AHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREI---SPG---ADVQTD  457 (560)
T ss_pred             EEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccccc---CCC---cccCCH
Confidence            66788999999999999999999999999999999999999999999999999998888755443   232   234688


Q ss_pred             hhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHHHHHHHHH
Q psy11618        713 HSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLFL  783 (1381)
Q Consensus       713 EeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMIA~l  783 (1381)
                      |+|++|+|+...+++|++||||||+  |++||||+++||||++|||||||||||++|++|||+|+||+|.=
T Consensus       458 ~~~~~~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaer  526 (560)
T PRK02106        458 EEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEK  526 (560)
T ss_pred             HHHHHHHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHH
Confidence            9999999999999999999999996  55899999999999999999999999999999999999999864

>PLN02785 Protein HOTHEAD

Probab=100.00  E-value=9.6e-92  Score=842.44  Aligned_cols=497  Identities=23%  Similarity=0.316  Sum_probs=354.3

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCccccCCccccccCCcccCcccccccccccccCCCceeec
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKI  239 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~~~iP~~~~~l~~s~~DW~Y~TePq~~a~~gl~~r~i~~  239 (1381)
                      .++|||||||||+|||++|+||||  +.||+|||||+++.....++. ......+..||+|++.||..    .+++++.+
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~-~~~~~~~~~d~~~~~~~q~~----~~~~~~~~  125 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSF-LENFHIGLADTSPTSASQAF----ISTDGVIN  125 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhh-HHhhCCcccccCCccccccc----cCCCceec
Confidence            457999999999999999999998  589999999986422222211 11223446799999999863    45778999


Q ss_pred             ccccccCccccccceEEecCCccchHHHhhcCCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccccCCCCCCCc
Q psy11618        240 TAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENN  319 (1381)
Q Consensus       240 pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~~e~~  319 (1381)
                      +|||++||||+||+|+|.||+++|||+      +||+|+++.|||+|.|+....                   .+..  +
T Consensus       126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~-------------------~~~~--~  178 (587)
T PLN02785        126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH-------------------WPKV--A  178 (587)
T ss_pred             cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc-------------------CCCc--C
Confidence            999999999999999999999999964      689999999999999975310                   0122  5


Q ss_pred             hHHHHHHHHHHHcCCCCCCCCCCCCC--CcccccCCCCC--CCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCC
Q psy11618        320 IIREIFETSAQELGYPCPKDMNDRYV--DVGFAELPGMT--RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ  395 (1381)
Q Consensus       320 pl~~~f~eA~eeLG~p~~~D~N~g~~--~~G~s~~~~ti--~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g  395 (1381)
                      +..+++.+|++|+|++.   .|+...  ..|. ....++  ++|+|+++++ ++ +++ +|+|++|+++|+|+||++|++
T Consensus       179 ~~~~~~~~a~~e~G~~~---~n~~~~d~~~G~-~~g~~i~~~~g~R~saa~-l~-~~~-~~~nl~Vl~~a~V~rIl~~~~  251 (587)
T PLN02785        179 PWQAALRDSLLEVGVSP---FNGFTYDHVYGT-KVGGTIFDEFGRRHTAAE-LL-AAG-NPNKLRVLLHATVQKIVFDTS  251 (587)
T ss_pred             hHHHHHHHHHHHcCCCc---cCCCCCCCccce-eeeEEEeCCCCEEcCHHH-HH-hhc-CCCCeEEEeCCEEEEEEEcCC
Confidence            78899999999999973   332220  1121 112234  5699999886 43 566 789999999999999999832


Q ss_pred             ---CeEEEEEEEecCCeEEEE----ecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhccccccCC
Q psy11618        396 ---NVATGVEYVNSKGETVRV----TANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFT  467 (1381)
Q Consensus       396 ---~RAtGVE~vd~~Gr~~tV----~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~  467 (1381)
                         +||+||++.+.+|+++++    +++||||+||||++|||+||+|||||++||+++||||++|+| ||||+|||+...
T Consensus       252 ~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~  331 (587)
T PLN02785        252 GKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNS  331 (587)
T ss_pred             CCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccc
Confidence               389999998866776655    367899999999999999999999999999999999999999 999999999984


Q ss_pred             ceEEEecCCccccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccccchh
Q psy11618        468 GPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKR  547 (1381)
Q Consensus       468 ~vvf~l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~  547 (1381)
                       +.+..+++..     +.....|..++.|++....+.                                    +..+   
T Consensus       332 -i~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~------------------------------------~~~~---  366 (587)
T PLN02785        332 -IFVPSKAPVE-----QSLIQTVGITKMGVYIEASSG------------------------------------FGQS---  366 (587)
T ss_pred             -eEEEeCCCch-----hhhHhhhhhhccccceecccc------------------------------------cccC---
Confidence             7777665431     111112222233332100000                                    0000   


Q ss_pred             hhhhHHHHHHHHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhHHHHHhccCCC
Q psy11618        548 TVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKR  627 (1381)
Q Consensus       548 tv~s~~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~  627 (1381)
                          .+    ......++.+..    ..++.........|+..                 .....-...      .+...
T Consensus       367 ----~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~------~~~~~  411 (587)
T PLN02785        367 ----PD----SIHCHHGIMSAE----IGQLSTIPPKQRTPEAI-----------------QAYIHRKKN------LPHEA  411 (587)
T ss_pred             ----ch----hhhhhccccccc----cccccccCcccccchhh-----------------hhhccCccc------ccccc
Confidence                00    000001111100    00000000000111100                 000000000      00000


Q ss_pred             CCeEEEEEeecccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhccccccc--------
Q psy11618        628 TDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSL--------  699 (1381)
Q Consensus       628 ~~~~tI~v~Ll~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~--------  699 (1381)
                      .....+...+++|+|||+|||+|+||.++|.||+||++||.|++.+++|+|.++|++++++++++...+..+        
T Consensus       412 ~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  491 (587)
T PLN02785        412 FNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMS  491 (587)
T ss_pred             cccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccc
Confidence            011234567889999999999999999999999999999999999999999999999999998876433210        


Q ss_pred             ---CCccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHH
Q psy11618        700 ---NLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAI  776 (1381)
Q Consensus       700 ---plPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqAp  776 (1381)
                         +.+..+. ..++|++|++|+|+++.|+||++||||||      +|||+++|||||+|||||||||||.+|++|||+|
T Consensus       492 ~~~~~~~~p~-~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~at  564 (587)
T PLN02785        492 VKANINLIPK-HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQAT  564 (587)
T ss_pred             cccccccCCC-CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCCCCCccHHH
Confidence               0000111 13577899999999999999999999999      6999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy11618        777 SFLLLFLF  784 (1381)
Q Consensus       777 VyMIA~l~  784 (1381)
                      +||||-=.
T Consensus       565 v~miaer~  572 (587)
T PLN02785        565 VMMMGRYM  572 (587)
T ss_pred             HHHHHHHH
Confidence            99998543

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-91  Score=833.00  Aligned_cols=518  Identities=32%  Similarity=0.471  Sum_probs=427.0

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCC-ccccCCccccccCC-cccCcccccccccccccCCCce
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI-HSRIPGMSSVLSLS-EFDHAYLAEPSQFAGLGVRNAR  236 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~-~~~iP~~~~~l~~s-~~DW~Y~TePq~~a~~gl~~r~  236 (1381)
                      ...+|||||||+|+|||++|+||| +++.||++||||+.... ..++|..+....++ ..+|.|+++||+    +.++|+
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r~   78 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGRE   78 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCcc
Confidence            456899999999999999999999 78999999999986543 56777766666655 789999999998    468899


Q ss_pred             eecccccccCccccccceEEecCCccchHHHhhc-CCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccccCCCC
Q psy11618        237 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKN  315 (1381)
Q Consensus       237 i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~l-Gn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~  315 (1381)
                      ..|+|||++||||+||+|+|.|+++.|||+|++. |++||+|+|++|||+|+|+......+.+...||.+||+++++++.
T Consensus        79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~  158 (542)
T COG2303          79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRS  158 (542)
T ss_pred             ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCC
Confidence            9999999999999999999999999999999875 889999999999999999976543321145899999999988754


Q ss_pred             CCCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCC
Q psy11618        316 KENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ  395 (1381)
Q Consensus       316 ~e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g  395 (1381)
                      .  +|..+++.++++++|++..+|+|+++ +.|++.++.++++|+|+|++++|++|+. +|+|++|.|++.|+||++| +
T Consensus       159 ~--~~~~~a~~~a~~~~G~~~~~~~~~~~-~~g~g~~~~~~~~g~r~sa~~a~l~~a~-~~~nl~v~t~a~v~ri~~~-~  233 (542)
T COG2303         159 P--NPIARAFIEAGEQLGFPTTPDPNGAD-QEGFGPYCVTICNGRRWSAARAYLKPAL-KRPNLTLLTGARVRRILLE-G  233 (542)
T ss_pred             c--hHHHHHHHHHHHHcCCCcCcccccCC-CCCcccceeeccCCeEeechhhcchhHh-cCCceEEecCCEEEEEEEE-C
Confidence            4  89999999999999999999999998 8899988888889999999999999988 9999999999999999998 8


Q ss_pred             CeEEEEEEEecCCe-EEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhccccccCCceEEEe
Q psy11618        396 NVATGVEYVNSKGE-TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAF  473 (1381)
Q Consensus       396 ~RAtGVE~vd~~Gr-~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~~vvf~l  473 (1381)
                      +|++||++...+++ .+...|+||||+||||||||||||+|||||++++.++||+++.|+| ||+|+|||.... +.++.
T Consensus       234 ~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~-~~~~~  312 (542)
T COG2303         234 DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIY-VAFEA  312 (542)
T ss_pred             CeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhh-hheec
Confidence            89999999874332 4666677899999999999999999999999999999999999999 999999999884 66655


Q ss_pred             cCCccccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccccchhhhhhHH
Q psy11618        474 SAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQE  553 (1381)
Q Consensus       474 ~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~tv~s~~  553 (1381)
                      +.+.. ..            ..++..                    .              +                ..
T Consensus       313 ~~~~~-~~------------~~~~~~--------------------~--------------~----------------~~  329 (542)
T COG2303         313 TEPTN-DS------------VLSLFS--------------------K--------------L----------------GI  329 (542)
T ss_pred             cCccc-cc------------cccccc--------------------c--------------c----------------cc
Confidence            44321 00            000000                    0              0                00


Q ss_pred             HHHHHHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhHHHHHhccCCCCCeEEE
Q psy11618        554 MVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVI  633 (1381)
Q Consensus       554 ~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~tI  633 (1381)
                      ...+|...++|+.+... .+ .+|..++.....||.|+++.+.+...               .       ...+...+++
T Consensus       330 ~~~~~~~~~~G~~~~~~-~~-~gf~~~~~~~~~p~~~~~~~~~~~~~---------------~-------~~~~~~~~~~  385 (542)
T COG2303         330 GADRYLLTRDGPGATNH-FE-GGFVRSGPAGEYPDGQYHFAPLPLAI---------------R-------AAGAEHGFTL  385 (542)
T ss_pred             cceeEEeecCCCccccc-cc-ccccccCccccCCCcccccccccccc---------------c-------ccccCCccEE
Confidence            01223334556554322 11 23666665567888887765443200               0       1123456788


Q ss_pred             EEeecccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccCCccCCCCCCCCch
Q psy11618        634 SMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTH  713 (1381)
Q Consensus       634 ~v~Ll~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~~SDE  713 (1381)
                      .....+|.|||+|+++|.||.+.|.|++||.+++.|.+.+++++|.+|++..+++.++....+.   .|   ....++||
T Consensus       386 ~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~---~~---~~~~~~~~  459 (542)
T COG2303         386 HVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAEL---AP---GPRVTTDE  459 (542)
T ss_pred             eeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhh---cC---CCccccHH
Confidence            8899999999999999999999999999999999999999999999999999877776665543   12   24567899


Q ss_pred             hHHHHHhcccCCCcccccCccccCCCCCCcccC-CCCeEeCcCCcEEecccCCCCCCCCCchHHHHHHHH
Q psy11618        714 SWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVT-PDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLF  782 (1381)
Q Consensus       714 eIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVD-s~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMIA~  782 (1381)
                      |+++|+++...|.+||+||||||  +||++||| +++||||++|||||||||||+++++|||+|++|+|.
T Consensus       460 ~~~~~~~~~~~t~~H~~GT~rMG--~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~  527 (542)
T COG2303         460 DISAAIRFLARTAYHPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAE  527 (542)
T ss_pred             HHHHHHHhccCccccccccccCC--CCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHH
Confidence            99999999999999999999999  56666666 999999999999999999999999999999999985

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=6.6e-66  Score=562.48  Aligned_cols=290  Identities=42%  Similarity=0.647  Sum_probs=240.6

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCccccC-CccccccCCcccCcccccccccccccCCCceeeccc
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIP-GMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITA  241 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~~~iP-~~~~~l~~s~~DW~Y~TePq~~a~~gl~~r~i~~pR  241 (1381)
                      |||||||||+|||++|+||||++++||+|||||++.......+ ........++++|.|.+.|++.    .+++...++|
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   76 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR   76 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence            8999999999999999999999778999999999765433222 1122223457899998888874    5788899999


Q ss_pred             ccccCccccccceEEecCCccchHHHhhc-CCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccc-cCCCCCCCc
Q psy11618        242 GKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPV-GLFKNKENN  319 (1381)
Q Consensus       242 GKvLGGSSsINgmvy~RGs~~DFD~Wa~l-Gn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~V-s~~p~~e~~  319 (1381)
                      ||++||||+||+|+|.|++++|||+|++. |.++|+||+++|||+|+|+...++    ++.||.+|++++ +.++..  .
T Consensus        77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~----~~~~g~~~~~~v~~~~~~~--~  150 (296)
T PF00732_consen   77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS----SDLHGVDGPLPVSSSPPYP--S  150 (296)
T ss_dssp             B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB----GGGSCBSSSEEEHHHCSCH--C
T ss_pred             ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc----ccccccccccccccccCCC--C
Confidence            99999999999999999999999999986 888999999999999999998665    567999999999 334444  6


Q ss_pred             hHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEec-CCCeE
Q psy11618        320 IIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN-DQNVA  398 (1381)
Q Consensus       320 pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd-~g~RA  398 (1381)
                      +..+.+.+|++++|++.+.|.++++ .+|+|..+.++.+|+|+|++++|++++. +|+|++|+++|+|+||+++ +++||
T Consensus       151 ~~~~~~~~a~~~~G~~~~~~~~~~~-~~g~~~~~~~~~~g~r~s~~~~~L~~a~-~~~n~~l~~~~~V~~i~~~~~~~~a  228 (296)
T PF00732_consen  151 PMNQALMDAAEELGIPVPQDFNGCD-PCGFCMTGFNCPNGARSSAATTYLPPAL-KRPNLTLLTNARVTRIIFDGDGGRA  228 (296)
T ss_dssp             THHHHHHHHHHHTTHHBCSCTTSST-CSEEEECEECECTTCBBHHHHHHHHHHT-TTTTEEEEESEEEEEEEEETTSTEE
T ss_pred             HHHHHHHHHHHHcCCcccccccccc-ccccccccccccchhceehhhcccchhh-ccCCccEEcCcEEEEEeeeccccce
Confidence            7889999999999999776888776 8898887767889999999999999988 8999999999999999997 67899


Q ss_pred             EEEEEEecCCe-EEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCccchhccccc
Q psy11618        399 TGVEYVNSKGE-TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLNA  464 (1381)
Q Consensus       399 tGVE~vd~~Gr-~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLPVGrNLQDHp  464 (1381)
                      +||++.+.+++ .+++.++||||+||||++||||||+|||||+++|++.||++++|+||||||||||
T Consensus       229 ~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~  295 (296)
T PF00732_consen  229 TGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHP  295 (296)
T ss_dssp             EEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred             eeeeeeecCCcceeeeccceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhccc
Confidence            99999997555 4566666899999999999999999999999999999999999999999999997

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR02462 pyranose_ox pyranose oxidase

Probab=100.00  E-value=2.4e-47  Score=454.63  Aligned_cols=482  Identities=16%  Similarity=0.146  Sum_probs=282.3

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCc---------c--ccCC--c----cccccCC-----------
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH---------S--RIPG--M----SSVLSLS-----------  214 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~---------~--~iP~--~----~~~l~~s-----------  214 (1381)
                      ||+||||||++|+++|+.++++ |.||+++|+|......         .  +-+.  .    ...++..           
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT   79 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence            7999999999999999999986 8999999999754210         0  0000  0    0000000           


Q ss_pred             --cccCcccccccccccc-cCC---C--ce-eecccccccCccccccceEEecCCccchHHHhhcCCCCC--ChhhHHHH
Q psy11618        215 --EFDHAYLAEPSQFAGL-GVR---N--AR-IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGW--GYDETLKY  283 (1381)
Q Consensus       215 --~~DW~Y~TePq~~a~~-gl~---~--r~-i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GW--swedLlPY  283 (1381)
                        .-.|+-  .|..+.-+ +.|   +  +. ....|-|++||+|.+|++.+.|.+++|- .|  .+ .||  +|||++||
T Consensus        80 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~~-~dWPI~y~eL~Py  153 (544)
T TIGR02462        80 LDPTAWSA--SIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--LS-DDAAEDDAEWDRL  153 (544)
T ss_pred             CCcccccc--CCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--CC-CCCCCCHHHHHHH
Confidence              011221  11110000 000   0  01 1135779999999999999999999652 22  23 699  99999999


Q ss_pred             HHHhcccccCCcccCCCCCCCCCCccccCCCCCCCchHHHHHHHHHHHc-CCCCCCCCCCCCCCcccccCCCCCCCCccc
Q psy11618        284 FVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL-GYPCPKDMNDRYVDVGFAELPGMTRYGLRF  362 (1381)
Q Consensus       284 FkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~~e~~pl~~~f~eA~eeL-G~p~~~D~N~g~~~~G~s~~~~ti~~G~Rs  362 (1381)
                      |+|+|+..+.+.           . .- .++.. .+...+   +..++. |.+..  ...+   .+..+.  .|..+.|+
T Consensus       154 Y~~Ae~~~gv~g-----------~-~~-~~~~~-~~~~~~---~~~~~~~g~~~~--~~~P---lA~~~~--~c~~~ak~  209 (544)
T TIGR02462       154 YTKAESLIGTST-----------D-QF-DESIR-HNLVLR---KLQDEYKGQRDF--QPLP---LACHRR--TDPTYVEW  209 (544)
T ss_pred             HHHHHHHhCCCC-----------C-cC-CCccc-chhHHH---HHHHHhcccccc--ccCc---hhhhcc--CCCcccee
Confidence            999999864331           1 00 00010 022222   233343 33111  0111   111110  23346677


Q ss_pred             chhhhcchhhhc---CCCCeEEEcCcEEEEEEecC-C-CeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcC
Q psy11618        363 SAADAYLTPIAG---KRTNLYVLKRSKVTKVIIND-Q-NVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG  436 (1381)
Q Consensus       363 SAa~AYL~Pa~~---~R~NLtILTnA~VtRIlfd~-g-~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSG  436 (1381)
                      |+..+.+.++..   +++|++|++||+|+||++|+ + ++|+||+|.|. +|++++++|+ .||+|||||+|||||++||
T Consensus       210 s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~  288 (544)
T TIGR02462       210 HSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSG  288 (544)
T ss_pred             cCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCC
Confidence            765555654331   38899999999999999983 3 68999999986 6888999996 7999999999999999999


Q ss_pred             CCCCCccccCCCCcccCCc-cchhccccccCCceEEEecCCccccchhhHHHHHHhhccCCCCCCccccccccccccccc
Q psy11618        437 IGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVK  515 (1381)
Q Consensus       437 IGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~~vvf~l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~  515 (1381)
                      +|++.+  ..|+.+....+ ||||+|||+... +....+++..             .+.+|+..    .   ..++.+  
T Consensus       289 ~~~~~~--p~gl~Nss~~g~VGRnlmdh~~~~-~~~~~~~~~~-------------~~~~~~~~----~---~~~~~~--  343 (544)
T TIGR02462       289 FGQLGR--PDPTNPPPLLPSLGRYITEQSMTF-CQIVLSTELV-------------DSVRSDPR----G---LDWWKE--  343 (544)
T ss_pred             CCCCcC--CCCcCCCCCCCCCCcchhcCCCcc-EEEEecchhh-------------hhccCCcc----c---cccccc--
Confidence            986542  44554443225 999999999873 5555554321             00111100    0   000000  


Q ss_pred             cccccccccccccccccccCCCcccccccchhhhhhHHHHHHHHHc-CCCCCccccccceEEEeecCCCCCCCCeeeeee
Q psy11618        516 IPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVN-RIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLL  594 (1381)
Q Consensus       516 ~~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~tv~s~~~~~eYl~~-~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~  594 (1381)
                                      +                   .   .++... ..++..       ..+.+     ..|+......
T Consensus       344 ----------------~-------------------~---~~~~~~~~~~~~~-------i~~~~-----~~~~~~~~~~  373 (544)
T TIGR02462       344 ----------------K-------------------V---ANHMMKHPEDPLP-------IPFRD-----PEPQVTTPFT  373 (544)
T ss_pred             ----------------c-------------------c---hhhhccccCCccc-------ccccc-----cCcccccccc
Confidence                            0                   0   000000 000000       00000     0000000000


Q ss_pred             ccccccchhhhhhhhccccchhHHHHHhccCCCCCeE-EEEEeecccCcCcEEEeec--CCCCCCccccCCCCCChhhHH
Q psy11618        595 YFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMG-VISMSLVNPKSCGKVTLKS--ADPLAPPCIDTGILSEPEDLA  671 (1381)
Q Consensus       595 p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~-tI~v~Ll~P~SRGsV~L~S--sDP~d~PvIDpNYLSdP~Dle  671 (1381)
                      ...-|+........ .++..       .+........ .-....+.|....+|++++  +|..+.|+.+.+|--++.|++
T Consensus       374 ~~~~w~~~~~~~~~-~~g~~-------~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~  445 (544)
T TIGR02462       374 EEHPWHTQIHRDAF-SYGAV-------GPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSK  445 (544)
T ss_pred             cccccchhhhhhhh-hcccc-------cccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHH
Confidence            00000000000000 00000       0000011111 1234566799999999976  599999998888888999999


Q ss_pred             HHHHHHHHHHHHhcCHHHHHhcccccccCCccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeE
Q psy11618        672 TLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKV  751 (1381)
Q Consensus       672 ~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRV  751 (1381)
                      .+.++.+.+++++     ++.|....     .       +..   .+.  ...+++|++||||||++ +++||||+++||
T Consensus       446 ~~~~~~~~~~~i~-----~~~G~~~~-----~-------~~~---~~~--~~~~~~H~~Gt~rMG~d-p~~sVvd~~~rv  502 (544)
T TIGR02462       446 RARRMMTDMCNVA-----AKIGGYLP-----G-------SLP---QFM--EPGLALHLAGTTRIGFD-EQTTVANTDSKV  502 (544)
T ss_pred             HHHHHHHHHHHHH-----HHcCCCcc-----c-------ccc---ccc--CCCccccCCCCeecCCC-CCCceECCCCcE
Confidence            9999999998874     44454221     0       000   011  12357899999999965 447999999999


Q ss_pred             eCcCCcEEecccCCCCCCCCCchHHHHHHHH
Q psy11618        752 KGIKGLRVADISVLPNAIITQSDAISFLLLF  782 (1381)
Q Consensus       752 hGVdNLRVVDASVfPtiPSgNpqApVyMIA~  782 (1381)
                      ||++||||+|+|+||+.+++||+.|+||+|.
T Consensus       503 ~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~  533 (544)
T TIGR02462       503 HNFKNLYVGGNGNIPTAFGANPTLTSMCYAI  533 (544)
T ss_pred             eCCCCeEEeccCcCCCCCCCCcHHHHHHHHH
Confidence            9999999999999999999999999999985

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=1e-36  Score=301.13  Aligned_cols=141  Identities=36%  Similarity=0.548  Sum_probs=117.3

Q ss_pred             cCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhccccccc-CCccCCCCCCCCchhHHHH
Q psy11618        640 PKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSL-NLEACSQYPWRSTHSWTCY  718 (1381)
Q Consensus       640 P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~-plPg~~~~~~~SDEeIe~y  718 (1381)
                      |+|||+|+|+|+||.+.|.|++||++||+|++.+++|+|.++|+++++ +++++..+..+ +.+.+......+|++|++|
T Consensus         1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (144)
T PF05199_consen    1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY   79 (144)
T ss_dssp             -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence            899999999999999999999999999999999999999999999998 77776544422 1223333445788899999


Q ss_pred             HhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHHHHHHHH
Q psy11618        719 IRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLF  782 (1381)
Q Consensus       719 IR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMIA~  782 (1381)
                      +|++..+.+|++||||||+++|+ ||||+++||||++||||+||||||+.+++|||+|+||+|.
T Consensus        80 ~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~  142 (144)
T PF05199_consen   80 IRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAE  142 (144)
T ss_dssp             HHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHH
T ss_pred             eeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHee
Confidence            99999999999999999998875 9999999999999999999999999999999999999984

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....

>PRK07121 hypothetical protein; Validated

Probab=99.29  E-value=1.1e-10  Score=139.22  Aligned_cols=58  Identities=29%  Similarity=0.454  Sum_probs=48.4

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLLm  433 (1381)
                      ++.|.+++++++|++++.|+++|++||++.+ +|+.++++|+|.||+|+|.++. |.++.
T Consensus       188 ~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~N~em~~  246 (492)
T PRK07121        188 AALGVQIRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAMNREMVA  246 (492)
T ss_pred             HhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence            5678999999999999987557899999976 7777889997899999998764 54444

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.21  E-value=2.5e-10  Score=137.20  Aligned_cols=64  Identities=22%  Similarity=0.366  Sum_probs=51.9

Q ss_pred             cchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh-hHHHHHH
Q psy11618        368 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA-NAQLLLL  434 (1381)
Q Consensus       368 YL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~-SPqLLml  434 (1381)
                      +.+.+. +++|++++++++|++++.| +++++||++.+ +|++++++|+|.||+|||.++ .+.++..
T Consensus       179 l~~~~~-~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~n~~m~~~  243 (513)
T PRK12837        179 FLAALA-RFPNARLRLNTPLVELVVE-DGRVVGAVVER-GGERRRVRARRGVLLAAGGFEQNDDMRAR  243 (513)
T ss_pred             HHHHHH-hCCCCEEEeCCEEEEEEec-CCEEEEEEEEE-CCcEEEEEeCceEEEeCCCccCCHHHHHH
Confidence            344444 5679999999999999987 67999999876 788889999889999999996 4555543

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.21  E-value=2.6e-10  Score=134.52  Aligned_cols=63  Identities=22%  Similarity=0.308  Sum_probs=52.4

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  439 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGP  439 (1381)
                      ++.+.+++++++|++++.+ ++|++||++.+.+|+..+++| |.||+|+|.+++++-++.+-.|+
T Consensus       142 ~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~~~~~  204 (466)
T PRK08274        142 ERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLREAWGQ  204 (466)
T ss_pred             HHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHhhcCC
Confidence            4678999999999999987 678999998654677778888 57999999999988777766654

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.21  E-value=2.3e-10  Score=139.79  Aligned_cols=59  Identities=22%  Similarity=0.320  Sum_probs=50.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLLL  434 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLLml  434 (1381)
                      +++|++|+++++|++++.|+++|++||++.+ +|++++++|+|-||+|+|.++. |.+++.
T Consensus       224 ~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~N~em~~~  283 (584)
T PRK12835        224 KDAGVPLWLDSPMTELITDPDGAVVGAVVER-EGRTLRIGARRGVILATGGFDHDMDWRKE  283 (584)
T ss_pred             HhCCceEEeCCEEEEEEECCCCcEEEEEEEe-CCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence            5789999999999999997567999999976 7888899998889999999875 665553

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.12  E-value=2.1e-10  Score=126.38  Aligned_cols=55  Identities=33%  Similarity=0.500  Sum_probs=42.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.+.+++++++|++|..+ +++++||+..+  |   +++| +.||+|||+ +|++++..+|+
T Consensus       158 ~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~--g---~i~a-d~vV~a~G~-~s~~l~~~~~~  212 (358)
T PF01266_consen  158 QRAGVEIRTGTEVTSIDVD-GGRVTGVRTSD--G---EIRA-DRVVLAAGA-WSPQLLPLLGL  212 (358)
T ss_dssp             HHTT-EEEESEEEEEEEEE-TTEEEEEEETT--E---EEEE-CEEEE--GG-GHHHHHHTTTT
T ss_pred             HHhhhhccccccccchhhc-ccccccccccc--c---cccc-ceeEecccc-cceeeeecccc
Confidence            3568999999999999998 77899998754  3   3777 479999996 89999998874

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.11  E-value=6.1e-10  Score=135.38  Aligned_cols=57  Identities=21%  Similarity=0.383  Sum_probs=48.9

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLLm  433 (1381)
                      ++.|++++++++|++++.| ++|++||++.+ +|++++++|+|.||+|+|.++. ++++.
T Consensus       219 ~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~N~em~~  276 (557)
T PRK12844        219 LAAGVPLWTNTPLTELIVE-DGRVVGVVVVR-DGREVLIRARRGVLLASGGFGHNAEMRK  276 (557)
T ss_pred             HhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE-CCeEEEEEecceEEEecCCccCCHHHHH
Confidence            5679999999999999987 67999999976 7888899998899999998876 44443

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.09  E-value=1e-09  Score=133.77  Aligned_cols=57  Identities=21%  Similarity=0.358  Sum_probs=48.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhH-HHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA-QLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SP-qLLm  433 (1381)
                      ++.|.+++++++|++++.+ ++|++||+..+ +|++.+++|+|-||+|+|.++.. ++++
T Consensus       228 ~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n~em~~  285 (564)
T PRK12845        228 LRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHDMEMRW  285 (564)
T ss_pred             HHCCCEEEecCEeeEEEec-CCEEEEEEEEE-CCcEEEEEcCCEEEEecCCccccHHHHH
Confidence            4678999999999999876 67999999876 78788899998999999988854 4444

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.06  E-value=1.8e-09  Score=124.97  Aligned_cols=56  Identities=32%  Similarity=0.468  Sum_probs=44.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      ++.+.++..+++|++++.| ++|++||++.+. +|+.++++|+ .||+|+|.++. +++.
T Consensus       152 ~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~  208 (417)
T PF00890_consen  152 EEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLR  208 (417)
T ss_dssp             HHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHH
T ss_pred             hhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-cccc
Confidence            3456999999999999998 669999999953 7899999997 89999999999 4443

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.01  E-value=3.6e-09  Score=124.99  Aligned_cols=51  Identities=24%  Similarity=0.456  Sum_probs=42.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +++|++|+++++|++++.+ +++++||...+ +|+.++++| |.||+|+|.++.
T Consensus       140 ~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~-~g~~~~i~A-k~VILAtGG~~~  190 (433)
T PRK06175        140 KRKNITIIENCYLVDIIEN-DNTCIGAICLK-DNKQINIYS-KVTILATGGIGG  190 (433)
T ss_pred             hcCCCEEEECcEeeeeEec-CCEEEEEEEEE-CCcEEEEEc-CeEEEccCcccc
Confidence            4679999999999999876 57899998776 666678899 579999999764

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.00  E-value=5.9e-09  Score=126.60  Aligned_cols=60  Identities=23%  Similarity=0.298  Sum_probs=48.9

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      .+.+.++.++++|+++..+ +++++||++.|. +|++.+++|+ .||.|||+ .+.++....|+
T Consensus       160 ~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~-wa~~l~~~~g~  220 (546)
T PRK11101        160 KEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAP-VVVNAAGI-WGQHIAEYADL  220 (546)
T ss_pred             HhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECC-EEEECCCh-hHHHHHHhcCC
Confidence            3568999999999999886 678999999774 5666789995 69999995 57888877664

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.99  E-value=8.3e-09  Score=120.89  Aligned_cols=57  Identities=25%  Similarity=0.333  Sum_probs=44.9

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLL  432 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLL  432 (1381)
                      ++.++++.++++|++++.|++++++||++.+.+|+.+.+++ |.||+|+|+... |+++
T Consensus       141 ~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~n~~m~  198 (439)
T TIGR01813       141 KKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGSNKEMI  198 (439)
T ss_pred             HHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEec-ceEEEecCCCCCCHHHH
Confidence            46689999999999999975678999999874555555666 689999998765 4443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.96  E-value=1.1e-08  Score=125.72  Aligned_cols=51  Identities=25%  Similarity=0.306  Sum_probs=41.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      +++|+++..+++|+++..+ +++++||...+. +|+.++++| |.||+|+|..+
T Consensus       144 ~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~  195 (608)
T PRK06854        144 KALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA  195 (608)
T ss_pred             hcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence            4457999999999999887 579999987543 566667888 57999999876

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.95  E-value=9.7e-09  Score=125.00  Aligned_cols=57  Identities=25%  Similarity=0.413  Sum_probs=48.7

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      ++.|++++++++|++++.| ++|++||++.+ +|++++++|+|.||+|+|.+++-+-|+
T Consensus       219 ~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~n~~m~  275 (557)
T PRK07843        219 QRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE-SGEPQLIRARRGVILASGGFEHNEQMR  275 (557)
T ss_pred             HcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe-CCcEEEEEeceeEEEccCCcCcCHHHH
Confidence            5679999999999999987 67999999876 788889999888999999998754443

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.94  E-value=2.4e-08  Score=121.86  Aligned_cols=55  Identities=16%  Similarity=0.337  Sum_probs=45.5

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL  431 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqL  431 (1381)
                      ++.+.++++++.|+++..+ +++++||++.+ ++++++++|+|.||+|+|.+..-.=
T Consensus       225 ~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~  279 (574)
T PRK12842        225 LDLGIPILTGTPARELLTE-GGRVVGARVID-AGGERRITARRGVVLACGGFSHDLA  279 (574)
T ss_pred             HhCCCEEEeCCEEEEEEee-CCEEEEEEEEc-CCceEEEEeCCEEEEcCCCccchHH
Confidence            5679999999999999987 67999999887 4445678888899999998874433

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.93  E-value=2.2e-08  Score=122.59  Aligned_cols=56  Identities=14%  Similarity=0.242  Sum_probs=46.9

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL  432 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLL  432 (1381)
                      ++.+.++.++++|++++.| +++++||++.+ +|++++++|+|.||+|+|+..+-.-+
T Consensus       228 ~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~  283 (581)
T PRK06134        228 EDLGVRIWESAPARELLRE-DGRVAGAVVET-PGGLQEIRARKGVVLAAGGFPHDPAR  283 (581)
T ss_pred             HhCCCEEEcCCEEEEEEEe-CCEEEEEEEEE-CCcEEEEEeCCEEEEcCCCcccCHHH
Confidence            5678999999999999887 67999999877 56667899978999999999764433

>PRK08275 putative oxidoreductase; Provisional

Probab=98.93  E-value=1.2e-08  Score=124.14  Aligned_cols=52  Identities=27%  Similarity=0.416  Sum_probs=43.2

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      ++.|+++++++.|++++.+++++++||...+. +|+.++++| |.||+|+|+.+
T Consensus       148 ~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~  200 (554)
T PRK08275        148 KRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRA-KAVILCCGAAG  200 (554)
T ss_pred             HHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEEC-CEEEECCCCcc
Confidence            46799999999999999874578999988653 676677888 57999999975

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.93  E-value=1.8e-08  Score=122.04  Aligned_cols=53  Identities=21%  Similarity=0.434  Sum_probs=45.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .++|++++++++|++++.|+++|++||...+ ++|+.++++| |-||+|+|.++.
T Consensus       145 ~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~  198 (543)
T PRK06263        145 IKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ  198 (543)
T ss_pred             hcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence            4689999999999999987556799998876 4777788999 579999998874

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.89  E-value=3.5e-08  Score=120.75  Aligned_cols=57  Identities=21%  Similarity=0.341  Sum_probs=48.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLLm  433 (1381)
                      ++.+.+++++++|++++.+ +++++||++.+ +|++++++|+|.||+|+|+++. ++++.
T Consensus       232 ~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~~n~em~~  289 (578)
T PRK12843        232 RARGVRILTQTDVESLETD-HGRVIGATVVQ-GGVRRRIRARGGVVLATGGFNRHPQLRR  289 (578)
T ss_pred             HhCCCEEEeCCEEEEEEee-CCEEEEEEEec-CCeEEEEEccceEEECCCCcccCHHHHH
Confidence            4678999999999999886 67999999876 7888889988889999999887 44444

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.89  E-value=1.7e-08  Score=132.14  Aligned_cols=53  Identities=25%  Similarity=0.445  Sum_probs=44.7

Q ss_pred             CCCeEEEcCcEEEEEEecC-----C---CeEEEEEEEec---CCeEEEEecCcEEEEcCCchhhH
Q psy11618        376 RTNLYVLKRSKVTKVIIND-----Q---NVATGVEYVNS---KGETVRVTANKEVILTAGAIANA  429 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd~-----g---~RAtGVE~vd~---~Gr~~tV~ArKEVILSAGAI~SP  429 (1381)
                      +.+.+|+++++|++++.|+     |   +|++||++.+.   +|+.++++| |-||+|+|.++.-
T Consensus       559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N  622 (1167)
T PTZ00306        559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSND  622 (1167)
T ss_pred             cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccC
Confidence            4689999999999999873     2   38999999875   677788999 5799999998863

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.89  E-value=2.1e-08  Score=120.79  Aligned_cols=68  Identities=26%  Similarity=0.269  Sum_probs=46.2

Q ss_pred             hcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        367 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       367 AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      ++.+.++ +++++++.++++|+++.-++++++ .|+..+ .+|+..+++|+ .||+|||+ .|.++++.+|+.
T Consensus       188 aL~~~a~-~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi~  256 (494)
T PRK05257        188 QLVGYLQ-KQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGIP  256 (494)
T ss_pred             HHHHHHH-hCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence            3333333 445699999999999987534433 344432 24554568885 79999997 577889999875

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.87  E-value=2.8e-08  Score=123.04  Aligned_cols=54  Identities=22%  Similarity=0.309  Sum_probs=45.4

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANA  429 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SP  429 (1381)
                      .+.|+++++++.|++++.+++++++||...+. +|+.+.++|+ -||+|+|.++..
T Consensus       198 ~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~~  252 (635)
T PLN00128        198 MKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAH-STILATGGYGRA  252 (635)
T ss_pred             HhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCccc
Confidence            45799999999999998875579999998764 6888888985 799999998753

>PRK12839 hypothetical protein; Provisional

Probab=98.86  E-value=3.7e-08  Score=120.57  Aligned_cols=56  Identities=21%  Similarity=0.332  Sum_probs=45.7

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQL  431 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqL  431 (1381)
                      ++.+.+|+++++|++++.++++|++||++.+++| +.+++++|.||+|+|+++. +..
T Consensus       225 ~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g-~~~i~aak~VVLAtGGf~~n~~~  281 (572)
T PRK12839        225 DDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDG-AVTVEATRGVVLATGGFPNDVDR  281 (572)
T ss_pred             HHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCC-cEEEEeCCEEEEcCCCcccCHHH
Confidence            4678999999999999887567999999877444 4667777899999999887 443

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.86  E-value=3.6e-08  Score=118.66  Aligned_cols=58  Identities=21%  Similarity=0.335  Sum_probs=45.7

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLLL  434 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLLml  434 (1381)
                      ++.++++.++++|+++..+ +++++||++...+|++++++| |.||+|+|.++. |..+..
T Consensus       201 ~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a-~~VVlAtGG~~~n~~m~~~  259 (506)
T PRK06481        201 QERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISS-KAVVVTTGGFGANKDMIAK  259 (506)
T ss_pred             HHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEec-CeEEEeCCCcccCHHHHHH
Confidence            4568999999999999865 678999998764556678888 589999997765 455554

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.85  E-value=2.6e-08  Score=118.07  Aligned_cols=65  Identities=26%  Similarity=0.276  Sum_probs=47.7

Q ss_pred             hcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCC
Q psy11618        367 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIANAQLLLLSGIGPK  440 (1381)
Q Consensus       367 AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPk  440 (1381)
                      ++...+.  ..|.++..|++|++|..++++    |.+.+ ++|+++ ++| |-||.||| ..+-+|++.+|+.+.
T Consensus       158 ~l~e~a~--~~g~~i~ln~eV~~i~~~~dg----~~~~~~~~g~~~-~~a-k~Vin~AG-l~Ad~la~~~g~~~~  223 (429)
T COG0579         158 ALAEEAQ--ANGVELRLNTEVTGIEKQSDG----VFVLNTSNGEET-LEA-KFVINAAG-LYADPLAQMAGIPED  223 (429)
T ss_pred             HHHHHHH--HcCCEEEecCeeeEEEEeCCc----eEEEEecCCcEE-EEe-eEEEECCc-hhHHHHHHHhCCCcc
Confidence            4444444  459999999999999987433    33322 256665 888 47999999 778899999999773

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.84  E-value=3.1e-08  Score=120.74  Aligned_cols=52  Identities=17%  Similarity=0.352  Sum_probs=43.7

Q ss_pred             CCCCeEEEcCcEEEEEEecC-CCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~-g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +++|++|+++++|++++.|+ +++++||...+ +|+.+.++| |-||+|+|..+.
T Consensus       146 ~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~-~g~~~~i~A-kaVILATGG~~~  198 (553)
T PRK07395        146 QRPNIEIISQALALSLWLEPETGRCQGISLLY-QGQITWLRA-GAVILATGGGGQ  198 (553)
T ss_pred             hcCCcEEEECcChhhheecCCCCEEEEEEEEE-CCeEEEEEc-CEEEEcCCCCcc
Confidence            45799999999999999873 47999998876 787778888 579999999753

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.83  E-value=5.1e-08  Score=120.33  Aligned_cols=53  Identities=13%  Similarity=0.229  Sum_probs=44.7

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .+.|++++++++|++++.++++|++||...+. +|+.+.++|+ -||+|+|.++.
T Consensus       177 ~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  230 (617)
T PTZ00139        177 LKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR  230 (617)
T ss_pred             HhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence            46799999999999999854679999998653 6887888885 79999999875

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.83  E-value=3e-08  Score=114.73  Aligned_cols=56  Identities=21%  Similarity=0.344  Sum_probs=40.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      .+.+.++..+++|+++..++++++++|+..  +|   +++|+ .||+|||+- ++++....|+
T Consensus       194 ~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~--~g---~i~a~-~vVvaagg~-~~~l~~~~g~  249 (407)
T TIGR01373       194 DRRGVDIIQNCEVTGFIRRDGGRVIGVETT--RG---FIGAK-KVGVAVAGH-SSVVAAMAGF  249 (407)
T ss_pred             HHCCCEEEeCCEEEEEEEcCCCcEEEEEeC--Cc---eEECC-EEEECCChh-hHHHHHHcCC
Confidence            466899999999999976535667777653  34   47775 699999984 5566665554

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.82  E-value=4.3e-08  Score=120.30  Aligned_cols=53  Identities=15%  Similarity=0.278  Sum_probs=45.1

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .+.|.+++++++|++++.|+++|++||...+. +|+.++++| |-||+|+|..+.
T Consensus       154 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~  207 (588)
T PRK08958        154 LKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKA-RATVLATGGAGR  207 (588)
T ss_pred             hhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence            46789999999999999865679999998653 687788999 589999999875

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.82  E-value=6.4e-08  Score=118.26  Aligned_cols=51  Identities=12%  Similarity=0.164  Sum_probs=43.9

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      .+.|++++.++.|++++.| ++|++||...+. +|+.++++| |-||+|+|.++
T Consensus       147 ~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~  198 (566)
T PRK06452        147 SGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG  198 (566)
T ss_pred             HhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence            4568999999999999987 679999998874 566778888 58999999987

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.81  E-value=8.7e-08  Score=116.46  Aligned_cols=52  Identities=15%  Similarity=0.234  Sum_probs=40.9

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec----CCeEEEEecCcEEEEcCCchh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~----~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      ++.++++..+++|++++.+++++++||...+.    +++.++++| |-||+|+|...
T Consensus       155 ~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~  210 (541)
T PRK07804        155 RADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLG  210 (541)
T ss_pred             HhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCC
Confidence            35579999999999999875579999998731    233457888 58999999876

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.81  E-value=8.6e-08  Score=118.84  Aligned_cols=52  Identities=25%  Similarity=0.390  Sum_probs=44.5

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +++|++++++++|++++.+ ++|++||...+. +|+.+.++|+ .||+|+|.++.
T Consensus       181 ~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~  233 (640)
T PRK07573        181 AAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTAD-AVVLATGGYGN  233 (640)
T ss_pred             HhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence            4679999999999999987 579999999874 5777788885 79999999885

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.81  E-value=6e-08  Score=119.24  Aligned_cols=53  Identities=25%  Similarity=0.296  Sum_probs=45.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .++|+++++++.|++++.++++|++||...+. +|+.++++|+ -||+|+|.++.
T Consensus       160 ~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  213 (598)
T PRK09078        160 LKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR  213 (598)
T ss_pred             hhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence            46789999999999999875579999998653 6777889994 79999999885

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.80  E-value=7.1e-08  Score=118.43  Aligned_cols=51  Identities=16%  Similarity=0.178  Sum_probs=42.6

Q ss_pred             CCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        377 TNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       377 ~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +|+++.++++|++++.++++|++||...+. +|+.+.++| |-||+|+|.++.
T Consensus       150 ~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~  201 (589)
T PRK08641        150 GLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI  201 (589)
T ss_pred             CCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence            358999999999999865679999999875 466667788 589999999885

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.79  E-value=3.7e-08  Score=114.05  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=31.9

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +|+||||||.+|+.+|.+|+++ |++|+|+|+++.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            6999999999999999999986 899999999964

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.79  E-value=9e-08  Score=115.58  Aligned_cols=51  Identities=25%  Similarity=0.354  Sum_probs=43.3

Q ss_pred             CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618        376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      ++|++++++++|+++..+ +++++||...+.+|+.++++| |.||+|+|..+.
T Consensus       141 ~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~  191 (510)
T PRK08071        141 VPHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG  191 (510)
T ss_pred             hcCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence            368999999999999876 678999998775677778888 589999999875

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.79  E-value=7.2e-08  Score=117.25  Aligned_cols=52  Identities=21%  Similarity=0.266  Sum_probs=43.5

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .+.|+++..++.|++++.+ ++|++||.+.+. +|+.++++| |-||+|+|....
T Consensus       140 ~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~  192 (566)
T TIGR01812       140 LKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR  192 (566)
T ss_pred             HHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence            3559999999999999987 679999998763 677678888 589999998763

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.78  E-value=9.9e-08  Score=122.23  Aligned_cols=50  Identities=32%  Similarity=0.435  Sum_probs=42.8

Q ss_pred             CCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618        376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      +.|+++.+++.+++++.+ ++|++||...+. +|+.+.++| |.||+|+|.++
T Consensus       155 ~~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g  205 (897)
T PRK13800        155 RERIRIENRLMPVRVLTE-GGRAVGAAALNTRTGEFVTVGA-KAVILATGPCG  205 (897)
T ss_pred             cCCcEEEeceeeEEEEee-CCEEEEEEEEecCCCcEEEEEC-CEEEECCCccc
Confidence            458999999999999887 679999998764 688888888 58999999986

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.78  E-value=6.8e-08  Score=118.06  Aligned_cols=52  Identities=25%  Similarity=0.378  Sum_probs=43.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .++|+++.+++.|++++.+ +++++||...+. +|+.++++| |-||+|+|+.+.
T Consensus       146 ~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~  198 (575)
T PRK05945        146 RRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR  198 (575)
T ss_pred             hhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence            4679999999999999887 678999987543 677677888 579999999864

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.76  E-value=8.1e-08  Score=116.67  Aligned_cols=57  Identities=25%  Similarity=0.317  Sum_probs=43.2

Q ss_pred             CCCeEEEcCcEEEEEEecCCCeEEEEEEEec--C------------CeEEEEecCcEEEEcCCchh-hHHHHHH
Q psy11618        376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS--K------------GETVRVTANKEVILTAGAIA-NAQLLLL  434 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~--~------------Gr~~tV~ArKEVILSAGAI~-SPqLLml  434 (1381)
                      +.+++++++++|++++.| ++|++||+..+.  +            +++++++| |-||+|+|.++ .++.+..
T Consensus       164 ~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~A-kaVILATGGf~~n~em~~~  235 (549)
T PRK12834        164 RGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRA-QAVIVTSGGIGGNHELVRR  235 (549)
T ss_pred             hCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEec-CEEEEeCCCcccCHHHHHH
Confidence            457999999999999987 689999997421  1            23467888 57999999887 4555553

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.76  E-value=1.4e-07  Score=114.41  Aligned_cols=53  Identities=26%  Similarity=0.390  Sum_probs=44.3

Q ss_pred             CCCCeEEEcCcEEEEEEecC-----CCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIIND-----QNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~-----g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +++|++++++++|++++.++     +++++||.+.+. +|+.++++| |-||+|+|.++.
T Consensus       150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~  208 (536)
T PRK09077        150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK  208 (536)
T ss_pred             hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence            56799999999999998763     379999998764 577778888 589999999874

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.75  E-value=5.3e-08  Score=117.06  Aligned_cols=62  Identities=19%  Similarity=0.157  Sum_probs=43.9

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  439 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGP  439 (1381)
                      ++.+.++..+++|++|.-+++++. .|+..+ .+|+..+++|+ .||+|||+ .|.++...+|+.+
T Consensus       189 ~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi~~  251 (483)
T TIGR01320       189 VQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGIPE  251 (483)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCCCc
Confidence            356899999999999987533322 233332 24555578885 79999996 5788899999753

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.74  E-value=2e-07  Score=114.62  Aligned_cols=53  Identities=13%  Similarity=0.186  Sum_probs=44.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .+.|.++..++.|++++.+++++++||.+.+. +|+.+.++| |-||+|+|..+.
T Consensus       159 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~  212 (591)
T PRK07057        159 VAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEA-KTTLFATGGAGR  212 (591)
T ss_pred             HhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence            45789999999999999875679999998753 577677888 579999998874

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.74  E-value=5e-08  Score=112.67  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      |++|||||-+|+.+|.+|+++ |++|.|+|++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~-g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQA-GHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCCc
Confidence            899999999999999999986 899999999853

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.74  E-value=2.3e-07  Score=113.91  Aligned_cols=52  Identities=17%  Similarity=0.367  Sum_probs=43.4

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +.+|+++.+++.|++++.+ +++++||...+. +|+.+.++| |-||+|+|....
T Consensus       145 ~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~  197 (582)
T PRK09231        145 KYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR  197 (582)
T ss_pred             cCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence            4469999999999999987 679999988653 677778888 589999998764

>PLN02815 L-aspartate oxidase

Probab=98.73  E-value=1.7e-07  Score=115.46  Aligned_cols=53  Identities=21%  Similarity=0.434  Sum_probs=43.5

Q ss_pred             CCCCeEEEcCcEEEEEEec-CCC--eEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIIN-DQN--VATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd-~g~--RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +++|+++++++.|++++.| +++  +++||.+.+. +|+.++++| |-||+|+|.++-
T Consensus       167 ~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~  223 (594)
T PLN02815        167 NDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH  223 (594)
T ss_pred             hcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence            4579999999999999986 343  4999998754 677788888 589999998863

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.73  E-value=2.2e-07  Score=113.89  Aligned_cols=53  Identities=21%  Similarity=0.322  Sum_probs=43.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCC---CeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQ---NVATGVEYVN-SKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g---~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .+.|+++.+++.|++++.+++   +|++||...+ .+|+.+.++| |-||+|+|..+.
T Consensus       151 ~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~  207 (583)
T PRK08205        151 VKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSGR  207 (583)
T ss_pred             HhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence            467899999999999998732   7999998865 3677778888 579999999874

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.72  E-value=1.8e-07  Score=113.14  Aligned_cols=54  Identities=13%  Similarity=0.159  Sum_probs=41.1

Q ss_pred             CeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCC
Q psy11618        378 NLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  439 (1381)
Q Consensus       378 NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGP  439 (1381)
                      ++++.+|++|++|.-+ +++..+|+..  +|   +++|+ .||+|||+ .|.++++.+|+|.
T Consensus       231 ~v~i~~~t~V~~I~~~-~~~~~~V~T~--~G---~i~A~-~VVvaAG~-~S~~La~~~Gi~~  284 (497)
T PTZ00383        231 KISINLNTEVLNIERS-NDSLYKIHTN--RG---EIRAR-FVVVSACG-YSLLFAQKMGYGL  284 (497)
T ss_pred             CEEEEeCCEEEEEEec-CCCeEEEEEC--CC---EEEeC-EEEECcCh-hHHHHHHHhCCCC
Confidence            4899999999999876 3444455432  34   57885 69999996 4889999999864

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.72  E-value=1.1e-07  Score=110.01  Aligned_cols=36  Identities=22%  Similarity=0.454  Sum_probs=32.7

Q ss_pred             cccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      +||++|||||.+|+.+|.+|++. ||++|.|+|++++
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~   38 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG   38 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            48999999999999999999974 6899999999864

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.72  E-value=2e-07  Score=114.44  Aligned_cols=52  Identities=17%  Similarity=0.320  Sum_probs=44.1

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +++|+++..++.|++++.+ +++++||...+. +|+.+.++| |-||+|+|..+.
T Consensus       144 ~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~  196 (580)
T TIGR01176       144 TYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR  196 (580)
T ss_pred             hcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence            4579999999999999987 679999988653 677788888 589999999774

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.69  E-value=2.7e-07  Score=112.93  Aligned_cols=52  Identities=23%  Similarity=0.338  Sum_probs=43.1

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +++|+++..+++|++++.+ +++++||...+. +|+.++++|+ -||+|+|..+.
T Consensus       149 ~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~~  201 (577)
T PRK06069        149 RFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAK-AGIIATGGAGR  201 (577)
T ss_pred             hcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECC-cEEEcCchhcc
Confidence            3479999999999999987 578999998763 6766788884 79999999863

>TIGR00551 nadB L-aspartate oxidase

Probab=98.69  E-value=3.6e-07  Score=109.55  Aligned_cols=51  Identities=18%  Similarity=0.316  Sum_probs=42.5

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +++|+++.++++|++++.+ +++++||...+ +|+..+++| |.||+|+|+...
T Consensus       140 ~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~-~~~~~~i~A-~~VVlAtGG~~~  190 (488)
T TIGR00551       140 NHPNIRIIEGENALDLLIE-TGRVVGVWVWN-RETVETCHA-DAVVLATGGAGK  190 (488)
T ss_pred             hcCCcEEEECeEeeeeecc-CCEEEEEEEEE-CCcEEEEEc-CEEEECCCcccC
Confidence            3479999999999999886 57899999887 455567888 589999999874

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.69  E-value=1.9e-07  Score=116.10  Aligned_cols=52  Identities=17%  Similarity=0.199  Sum_probs=44.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .+.|+++..++.|++++.| +++++||.+.+ .+|+.+.++| |-||+|+|.++.
T Consensus       169 ~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~  221 (657)
T PRK08626        169 IKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVA-KATLIATGGYGR  221 (657)
T ss_pred             HhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence            4679999999999999987 67999999986 3788888889 579999998774

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.68  E-value=2.7e-07  Score=105.10  Aligned_cols=33  Identities=42%  Similarity=0.674  Sum_probs=31.0

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ||+||||||.+|+.+|..|+++ |++|.|+|+++
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~   33 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFD   33 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccC
Confidence            7999999999999999999986 89999999975

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.67  E-value=2.4e-07  Score=112.09  Aligned_cols=51  Identities=22%  Similarity=0.436  Sum_probs=42.2

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +++|+++..++.|+++..+ +++++||+..+ +|+.++++|+ .||+|+|.++.
T Consensus       148 ~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~-~~~~~~i~Ak-~VVLATGG~~~  198 (513)
T PRK07512        148 ATPSITVLEGAEARRLLVD-DGAVAGVLAAT-AGGPVVLPAR-AVVLATGGIGG  198 (513)
T ss_pred             hCCCCEEEECcChhheeec-CCEEEEEEEEe-CCeEEEEECC-EEEEcCCCCcC
Confidence            4568999999999999876 67999999887 5555678884 79999999863

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.66  E-value=2.1e-07  Score=112.45  Aligned_cols=70  Identities=21%  Similarity=0.173  Sum_probs=46.9

Q ss_pred             hhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCCCC
Q psy11618        366 DAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGP  439 (1381)
Q Consensus       366 ~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGP  439 (1381)
                      +++.+.+. ++++.++.+|++|+++..+++++.+ |+..+. +|++.+++|+ .||+|||+ .|-++++.+|+.+
T Consensus       188 ~aL~~~l~-~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi~~  258 (497)
T PRK13339        188 RKLAKHLE-SHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGIPE  258 (497)
T ss_pred             HHHHHHHH-hCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCCCc
Confidence            34554443 4568999999999999866233322 333221 4544467885 79999996 6788999999753

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.65  E-value=1.9e-07  Score=110.22  Aligned_cols=37  Identities=49%  Similarity=0.631  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++||+||||||+||+++|..|+++ |.+|+++|+++.
T Consensus         3 ~~~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~   39 (428)
T PRK10157          3 EDIFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNS   39 (428)
T ss_pred             cccCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCC
Confidence            3569999999999999999999975 999999999864

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.64  E-value=4.1e-07  Score=112.64  Aligned_cols=60  Identities=18%  Similarity=0.259  Sum_probs=48.9

Q ss_pred             CCCCeEEEcCcEEEEEEecC-CCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcC
Q psy11618        375 KRTNLYVLKRSKVTKVIIND-QNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG  436 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~-g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSG  436 (1381)
                      .+.+.++..+++|+++..++ +++++||++.|. +|++++++|+ .||+|||+- |.++....|
T Consensus       243 ~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGaw-s~~l~~~~g  304 (627)
T PLN02464        243 ALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGPF-CDEVRKMAD  304 (627)
T ss_pred             HhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCHh-HHHHHHhcc
Confidence            46689999999999998864 578999999774 5666688885 799999965 788888776

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.63  E-value=1.8e-07  Score=111.02  Aligned_cols=38  Identities=29%  Similarity=0.331  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGG  196 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~  196 (1381)
                      .+.++|++|||||.+|+.+|.+|+|+ ||.+|.|+|++.
T Consensus        21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            44569999999999999999999985 689999999984

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.62  E-value=7.2e-07  Score=106.14  Aligned_cols=67  Identities=25%  Similarity=0.237  Sum_probs=50.2

Q ss_pred             cchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        368 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       368 YL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      ++.-.. +++|.++..|++|++|.-++++ .--|++.|. +|++++++|+ -|.++||+- |=.+||.|||.
T Consensus       187 l~~~l~-~~~~~~~~~~~eV~~i~r~~dg-~W~v~~~~~~~~~~~~v~a~-FVfvGAGG~-aL~LLqksgi~  254 (488)
T PF06039_consen  187 LVEYLQ-KQKGFELHLNHEVTDIKRNGDG-RWEVKVKDLKTGEKREVRAK-FVFVGAGGG-ALPLLQKSGIP  254 (488)
T ss_pred             HHHHHH-hCCCcEEEecCEeCeeEECCCC-CEEEEEEecCCCCeEEEECC-EEEECCchH-hHHHHHHcCCh
Confidence            343344 6789999999999999887333 234444443 6788899995 899999975 77899999983

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.62  E-value=5.3e-07  Score=107.72  Aligned_cols=38  Identities=26%  Similarity=0.468  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .++||+||||+|-+||++|+-||++ |+||+++|+.+..
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~y   39 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYY   39 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCc
Confidence            4579999999999999999999975 9999999998643

>PLN02661 Putative thiazole synthesis

Probab=98.62  E-value=2.7e-07  Score=107.31  Aligned_cols=38  Identities=37%  Similarity=0.422  Sum_probs=33.8

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ...++|++|||||+||+++|..++++++.+|.++|++.
T Consensus        89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~  126 (357)
T PLN02661         89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV  126 (357)
T ss_pred             hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence            44579999999999999999999987789999999853

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.62  E-value=4.8e-07  Score=111.60  Aligned_cols=52  Identities=27%  Similarity=0.302  Sum_probs=43.6

Q ss_pred             CCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      ++|++++++++|++++.|+++|++||...+. +|+.+.++|+ -||+|+|.++.
T Consensus       145 ~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~  197 (603)
T TIGR01811       145 AGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSAD-AVILATGGYGN  197 (603)
T ss_pred             cCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence            4689999999999999875679999999874 5776788885 79999999863

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.61  E-value=5.9e-07  Score=111.24  Aligned_cols=49  Identities=20%  Similarity=0.280  Sum_probs=41.4

Q ss_pred             CeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        378 NLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       378 NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      |+++..+++|++++.+ +++++||...+. +|+.+.++|+ .||+|+|.++.
T Consensus       165 ~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~  214 (626)
T PRK07803        165 RIKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAP-AVVLATGGIGK  214 (626)
T ss_pred             ceEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcC-eEEECCCcccC
Confidence            4999999999999987 678999987653 6777788885 79999998764

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.60  E-value=6.5e-07  Score=110.77  Aligned_cols=51  Identities=24%  Similarity=0.282  Sum_probs=41.8

Q ss_pred             CCCeEEEcCcEEEEEEecCC--CeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618        376 RTNLYVLKRSKVTKVIINDQ--NVATGVEYVNS-KGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd~g--~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      +.+.+++++++|++++.|++  +|++||...+. +|+.++++| |-||+|+|..+
T Consensus       138 ~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~  191 (614)
T TIGR02061       138 NALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAV  191 (614)
T ss_pred             hCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCccc
Confidence            34579999999999998732  79999998654 677778888 58999999985

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.59  E-value=7.5e-07  Score=101.37  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=32.6

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++||++|||||.+|+.+|..|++. |++|.|+|++.
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~   36 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFM   36 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence            369999999999999999999986 89999999985

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.58  E-value=7.6e-07  Score=108.92  Aligned_cols=66  Identities=21%  Similarity=0.341  Sum_probs=49.8

Q ss_pred             chhhhcchhhhc--CCCCeEEEcCcEEEEEEec-CC--CeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        363 SAADAYLTPIAG--KRTNLYVLKRSKVTKVIIN-DQ--NVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       363 SAa~AYL~Pa~~--~R~NLtILTnA~VtRIlfd-~g--~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +..++...|..+  +++++++.+|++|++|..+ ++  ++|+||++.+. ++++..+.+++-||++.|.+.+
T Consensus       223 nqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~  294 (576)
T PRK13977        223 NQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE  294 (576)
T ss_pred             CchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence            344555666431  5779999999999999996 33  79999999862 3345667888999999997743

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.55  E-value=4.4e-07  Score=112.59  Aligned_cols=34  Identities=35%  Similarity=0.413  Sum_probs=32.0

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++|+||||||.+|+.+|.+|+++ |++|.|+|++.
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCC
Confidence            58999999999999999999986 89999999985

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.54  E-value=3.4e-07  Score=112.12  Aligned_cols=86  Identities=21%  Similarity=0.206  Sum_probs=59.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh-----hHHHHHHcCCCCCCccccCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA-----NAQLLLLSGIGPKAHLDEVKI  448 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~-----SPqLLmlSGIGPkd~Le~lGI  448 (1381)
                      +.++.++..+..|+++..|+++++.||...+. +|+.+.++| |.||+|+|+.+     |+......|=|- ....+.|.
T Consensus       150 ~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g~~~~~~t~~~~~tGdG~-~ma~~aGa  227 (562)
T COG1053         150 KFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRA-KAVILATGGAGRLYPYTTNAHIGTGDGV-AMAYRAGA  227 (562)
T ss_pred             HhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEec-CcEEEccCCceEEEeccCCccccCCcHH-HHHHhcCC
Confidence            34678999999999999885556999988775 688888888 67999999988     444444432221 12234444


Q ss_pred             CcccCCccchhccccccC
Q psy11618        449 PVKQDLRVGENLKLNAQF  466 (1381)
Q Consensus       449 pVVvDLPVGrNLQDHp~v  466 (1381)
                      + ..   ..++-|-||..
T Consensus       228 ~-l~---dme~~Q~hpt~  241 (562)
T COG1053         228 P-LI---DMEFVQFHPTG  241 (562)
T ss_pred             c-cc---CCCccccccce
Confidence            4 22   46677888865

>KOG1298|consensus

Probab=98.53  E-value=2.2e-07  Score=107.74  Aligned_cols=39  Identities=36%  Similarity=0.468  Sum_probs=34.7

Q ss_pred             cCCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        157 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       157 ~~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .+.+.++|+||||||-+||.+|+.|+++ |+||.|||+-=
T Consensus        40 ~~~~~~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERDl   78 (509)
T KOG1298|consen   40 ARNDGAADVIIVGAGVAGSALAYALAKD-GRRVHVIERDL   78 (509)
T ss_pred             hccCCcccEEEECCcchHHHHHHHHhhC-CcEEEEEeccc
Confidence            3455679999999999999999999987 99999999864

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.52  E-value=1e-07  Score=112.76  Aligned_cols=50  Identities=22%  Similarity=0.330  Sum_probs=31.9

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ  430 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPq  430 (1381)
                      ++.+.++.++++|++|..+ ++++.+|+. + +++  +++|+ .||+|+|...-|+
T Consensus       120 ~~~gv~i~~~~~V~~i~~~-~~~~f~v~~-~-~~~--~~~a~-~vILAtGG~S~p~  169 (409)
T PF03486_consen  120 KRLGVEIHFNTRVKSIEKK-EDGVFGVKT-K-NGG--EYEAD-AVILATGGKSYPK  169 (409)
T ss_dssp             HHHT-EEE-S--EEEEEEE-TTEEEEEEE-T-TTE--EEEES-EEEE----SSSGG
T ss_pred             HHcCCEEEeCCEeeeeeec-CCceeEeec-c-Ccc--cccCC-EEEEecCCCCccc
Confidence            4679999999999999987 566778877 2 333  67774 6999999888776

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.50  E-value=6.8e-07  Score=104.62  Aligned_cols=38  Identities=34%  Similarity=0.561  Sum_probs=34.2

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  199 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~  199 (1381)
                      +.+|+||||||+||..+|...|+. |++|+|+|+|+...
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~G   39 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLG   39 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCcccc
Confidence            468999999999999999999974 99999999997543

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.47  E-value=1.2e-06  Score=99.92  Aligned_cols=33  Identities=36%  Similarity=0.502  Sum_probs=31.1

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ||++|||||.+|+.+|.+|+++ |++|.|+|++.
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~   33 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSS   33 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            6999999999999999999986 89999999984

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK10015 oxidoreductase; Provisional

Probab=98.46  E-value=7.8e-07  Score=105.31  Aligned_cols=37  Identities=46%  Similarity=0.670  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++||+||||||+||+++|.++|++ |.+|+++|+++.
T Consensus         3 ~~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~   39 (429)
T PRK10015          3 DDKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDS   39 (429)
T ss_pred             ccccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence            3569999999999999999999975 999999999863

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.45  E-value=8.2e-07  Score=107.73  Aligned_cols=77  Identities=25%  Similarity=0.312  Sum_probs=58.8

Q ss_pred             CCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcC
Q psy11618        358 YGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSG  436 (1381)
Q Consensus       358 ~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSG  436 (1381)
                      +..|-...++  ..+  ...+-++++.++|+++..+ ++ ++||++.|. +|++++++|+ .||-||| .-+-+++...|
T Consensus       162 ddaRLv~~~a--~~A--~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~-~VVNAaG-pW~d~i~~~~~  233 (532)
T COG0578         162 DDARLVAANA--RDA--AEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRAR-AVVNAAG-PWVDEILEMAG  233 (532)
T ss_pred             chHHHHHHHH--HHH--Hhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcC-EEEECCC-ccHHHHHHhhc
Confidence            4456555432  122  3568899999999999988 55 999999997 6899999995 6999888 56778999888


Q ss_pred             CCCCCc
Q psy11618        437 IGPKAH  442 (1381)
Q Consensus       437 IGPkd~  442 (1381)
                      -.++.+
T Consensus       234 ~~~~~~  239 (532)
T COG0578         234 LEQSPH  239 (532)
T ss_pred             ccCCCC
Confidence            766433

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.45  E-value=1.2e-06  Score=97.69  Aligned_cols=37  Identities=32%  Similarity=0.320  Sum_probs=32.9

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +..+||++|||||+||+++|.++++ +|.+|+++|+.+
T Consensus        22 ~~~~~DVvIVGgGpAGl~AA~~la~-~G~~V~liEk~~   58 (257)
T PRK04176         22 DYLEVDVAIVGAGPSGLTAAYYLAK-AGLKVAVFERKL   58 (257)
T ss_pred             HhccCCEEEECccHHHHHHHHHHHh-CCCeEEEEecCC
Confidence            3456999999999999999999997 599999999864

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.39  E-value=2.7e-07  Score=109.04  Aligned_cols=57  Identities=26%  Similarity=0.335  Sum_probs=0.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      .++|++|+.+++|+++..| ++|++||++.+++| +++++|+ .||=|+|   .-.+.-++|.
T Consensus       101 ~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g-~~~i~A~-~~IDaTG---~g~l~~~aG~  157 (428)
T PF12831_consen  101 AEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSG-RKEIRAK-VFIDATG---DGDLAALAGA  157 (428)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             ccccccccccccccccccc-cccccccccccccc-ccccccc-ccccccc---cccccccccc
Confidence            4679999999999999998 78899999988555 7899995 7999988   3467777774

>PRK06185 hypothetical protein; Provisional

Probab=98.37  E-value=3.9e-06  Score=97.09  Aligned_cols=60  Identities=22%  Similarity=0.248  Sum_probs=44.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  439 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGP  439 (1381)
                      +.+|.++..+++|+++..+ +++++||++.+.+| +++++|+ -||.|.|+ +|+ +=...|++.
T Consensus       120 ~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g-~~~i~a~-~vI~AdG~-~S~-vr~~~gi~~  179 (407)
T PRK06185        120 AYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDG-PGEIRAD-LVVGADGR-HSR-VRALAGLEV  179 (407)
T ss_pred             hCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCC-cEEEEeC-EEEECCCC-chH-HHHHcCCCc
Confidence            4579999999999999887 56788898876344 3578884 78888885 453 445556654

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.36  E-value=4e-06  Score=98.82  Aligned_cols=54  Identities=15%  Similarity=0.184  Sum_probs=41.5

Q ss_pred             CCCCeEEEcCcEEEEEEecC-CCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL  432 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~-g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLL  432 (1381)
                      ++.+.+++++++|++++.++ +++++||+..+ ++  .+++| |.||+|+|.++..+=+
T Consensus       134 ~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~-~~--~~i~a-k~VIlAtGG~~~n~~~  188 (432)
T TIGR02485       134 ERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV-GT--HRITT-QALVLAAGGLGANRDW  188 (432)
T ss_pred             HHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC-Cc--EEEEc-CEEEEcCCCcccCHHH
Confidence            46789999999999998863 57899998743 33  46777 5799999988764433

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.34  E-value=3.2e-06  Score=100.61  Aligned_cols=53  Identities=15%  Similarity=0.189  Sum_probs=41.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL  431 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqL  431 (1381)
                      ++.+.++.++++|+++..+ ++++++|. .+ +|++.+++|+ .||+|+|.+.+.-+
T Consensus       270 ~~~Gv~I~~g~~V~~v~~~-~~~V~~v~-~~-~g~~~~i~AD-~VVLAtGrf~s~GL  322 (422)
T PRK05329        270 ERLGGRIMPGDEVLGAEFE-GGRVTAVW-TR-NHGDIPLRAR-HFVLATGSFFSGGL  322 (422)
T ss_pred             HhCCCEEEeCCEEEEEEEe-CCEEEEEE-ee-CCceEEEECC-EEEEeCCCcccCce
Confidence            4678999999999999887 55677765 33 6777788885 79999998766543

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.33  E-value=4.9e-06  Score=99.57  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +|++|||||.||+.+|.+++|+ |.+|+|+|+++
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            7999999999999999999985 89999999974

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.33  E-value=4.2e-06  Score=96.87  Aligned_cols=38  Identities=34%  Similarity=0.514  Sum_probs=34.2

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ...+||++|||||+||+++|..|++. |++|.|+|+.++
T Consensus        15 ~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   52 (415)
T PRK07364         15 RSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPA   52 (415)
T ss_pred             CccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCc
Confidence            44579999999999999999999975 999999999974

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.33  E-value=4.3e-07  Score=109.69  Aligned_cols=59  Identities=20%  Similarity=0.217  Sum_probs=44.1

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHH-cCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLL-SGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLml-SGI  437 (1381)
                      .+.+.++.++++|+++..+ ++ ..+|+..+. +|++.+++|+ .||.|||+ .+.++... .|+
T Consensus       166 ~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~~g~  226 (508)
T PRK12266        166 AERGAEILTRTRVVSARRE-NG-LWHVTLEDTATGKRYTVRAR-ALVNAAGP-WVKQFLDDGLGL  226 (508)
T ss_pred             HHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEcCCCCEEEEEcC-EEEECCCc-cHHHHHhhccCC
Confidence            4668999999999999876 44 357877663 5767789995 79999996 46677653 354

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.32  E-value=2.8e-06  Score=94.78  Aligned_cols=36  Identities=36%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ..+||++|||||+||+++|.+++++ |.+|+++|+++
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~   54 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSL   54 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence            3579999999999999999999976 89999999995

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.32  E-value=3.3e-06  Score=101.81  Aligned_cols=55  Identities=20%  Similarity=0.224  Sum_probs=42.5

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      .+.+.++..+++|+++..+ ++ ..+|+..+..|++.+++|+ .||.|||+ .++++..
T Consensus       166 ~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~  220 (502)
T PRK13369        166 AERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRAR-ALVNAAGP-WVTDVIH  220 (502)
T ss_pred             HHCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEec-EEEECCCc-cHHHHHh
Confidence            4668999999999999876 33 4578777644777889994 79999995 4677765

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.27  E-value=3.8e-06  Score=96.15  Aligned_cols=38  Identities=37%  Similarity=0.627  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ..++|+||||+|-||.|+|+++||+ ++||+++|.-++.
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~a-G~~V~ildQEgeq   40 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGEQ   40 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhc-CceEEEEcccccc
Confidence            4679999999999999999999975 9999999987754

>TIGR02730 carot_isom carotene isomerase

Probab=98.26  E-value=4.9e-06  Score=99.77  Aligned_cols=52  Identities=25%  Similarity=0.388  Sum_probs=41.1

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL  432 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLL  432 (1381)
                      ++.+.+|.++++|++|..+ +++++||+..+  |+  +++|+ .||.|||+-+|=+-|
T Consensus       240 ~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~--g~--~~~ad-~vV~a~~~~~~~~~L  291 (493)
T TIGR02730       240 EKHGGQIRYRARVTKIILE-NGKAVGVKLAD--GE--KIYAK-RIVSNATRWDTFGKL  291 (493)
T ss_pred             HHCCCEEEeCCeeeEEEec-CCcEEEEEeCC--CC--EEEcC-EEEECCChHHHHHHh
Confidence            4668999999999999987 67899998754  54  45674 699999987776544

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.25  E-value=1.1e-05  Score=96.59  Aligned_cols=58  Identities=29%  Similarity=0.446  Sum_probs=45.7

Q ss_pred             cchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh
Q psy11618        368 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       368 YL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      ..+.++ +|||++++.++.+.++..|++..+.||.+.+++++..+++|+ .||||+|.++
T Consensus       139 L~~~v~-~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g  196 (518)
T COG0029         139 LLKKVR-NRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAK-AVVLATGGLG  196 (518)
T ss_pred             HHHHHh-cCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence            334455 789999999999999999854456699998844456788884 7999999764

>PLN02985 squalene monooxygenase

Probab=98.24  E-value=9.8e-06  Score=98.52  Aligned_cols=37  Identities=35%  Similarity=0.445  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .+.+||+||||||.||+++|..|+++ |++|.++|+.+
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~   76 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDL   76 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcC
Confidence            45679999999999999999999975 99999999964

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.20  E-value=6.5e-06  Score=101.70  Aligned_cols=35  Identities=31%  Similarity=0.536  Sum_probs=32.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .+||+||||||+|||.+|.++|+. |.+|+++|.++
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNL   37 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHc-CCcEEEEeccc
Confidence            469999999999999999999975 99999999864

>PRK07208 hypothetical protein; Provisional

Probab=98.19  E-value=2.2e-05  Score=93.29  Aligned_cols=56  Identities=20%  Similarity=0.103  Sum_probs=40.8

Q ss_pred             CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618        376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL  432 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLL  432 (1381)
                      +.+.+|.+|++|++|..++++.+++|.+.+.+|+.++++|+ .||.++.+-.+.+++
T Consensus       230 ~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad-~VI~a~p~~~l~~~l  285 (479)
T PRK07208        230 ALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTAD-QVISSMPLRELVAAL  285 (479)
T ss_pred             HcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcC-EEEECCCHHHHHHhc
Confidence            45789999999999999854556666665435766678884 688877766666654

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.17  E-value=4.9e-06  Score=100.27  Aligned_cols=36  Identities=28%  Similarity=0.517  Sum_probs=32.6

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +.||+||||||.+|.++|.+||++ |++|.|+|+-..
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~   37 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDR   37 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCC
Confidence            469999999999999999999975 999999997653

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.17  E-value=3.2e-05  Score=88.28  Aligned_cols=37  Identities=30%  Similarity=0.417  Sum_probs=33.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .++|+||||||-+|+.+|..|+++ |.+|.++|+++..
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~   39 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAG   39 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccC
Confidence            568999999999999999999987 7799999999743

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.16  E-value=9.8e-06  Score=88.70  Aligned_cols=58  Identities=28%  Similarity=0.366  Sum_probs=45.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHc
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS  435 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlS  435 (1381)
                      +++|+++.++++|+++.-+  +++++|++.+. +|+.+++.++ .||+|.|.-..+.++..+
T Consensus       188 ~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~  246 (300)
T TIGR01292       188 KNPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL  246 (300)
T ss_pred             hCCCeEEEeccEEEEEEcc--CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence            4459999999999999744  36778887653 5666788884 799999977777777765

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.15  E-value=5.5e-06  Score=99.06  Aligned_cols=53  Identities=23%  Similarity=0.242  Sum_probs=41.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      ++.+.+|.+++.|++|..+ +++++||+..+  |+  +++|+ .||.|++.-++-+.|.
T Consensus       230 ~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~--g~--~~~ad-~VI~a~~~~~~~~~l~  282 (502)
T TIGR02734       230 EDLGGELRLNAEVIRIETE-GGRATAVHLAD--GE--RLDAD-AVVSNADLHHTYRRLL  282 (502)
T ss_pred             HHCCCEEEECCeEEEEEee-CCEEEEEEECC--CC--EEECC-EEEECCcHHHHHHHhc
Confidence            3557899999999999987 57888997754  54  45675 6999999888887664

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.08  E-value=1.6e-05  Score=96.31  Aligned_cols=59  Identities=20%  Similarity=0.348  Sum_probs=48.4

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHc
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS  435 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlS  435 (1381)
                      +++|++++++++|+++.-+ ++++++|++.+. +|+++++.++ .|++|.|..-.++++..+
T Consensus       398 ~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~  457 (517)
T PRK15317        398 SLPNVTIITNAQTTEVTGD-GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT  457 (517)
T ss_pred             cCCCcEEEECcEEEEEEcC-CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence            4579999999999999754 578999999864 5666788885 799999998888887654

>KOG2404|consensus

Probab=98.07  E-value=1.8e-05  Score=90.55  Aligned_cols=47  Identities=28%  Similarity=0.603  Sum_probs=41.4

Q ss_pred             eEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh
Q psy11618        379 LYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       379 LtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      ++|.+|++|++|+- ++++++||||+|.+|+++.+.++ .||+|.|.++
T Consensus       160 ~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~-~VVlatGGf~  206 (477)
T KOG2404|consen  160 VKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGD-AVVLATGGFG  206 (477)
T ss_pred             Hhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecC-ceEEecCCcC
Confidence            78999999999994 47899999999988888777774 7999999886

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.01  E-value=4.8e-05  Score=92.45  Aligned_cols=37  Identities=35%  Similarity=0.505  Sum_probs=33.7

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+++|++|||||++|+++|..|++. |.+|.|+|+.++
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~   44 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPT   44 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            5679999999999999999999975 999999999864

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.00  E-value=4e-05  Score=91.70  Aligned_cols=56  Identities=29%  Similarity=0.278  Sum_probs=42.4

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLL  432 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLL  432 (1381)
                      ++.+.+|.+|+.|++|..+ +++++||...+. +|+..+++|+ .||.++.+-.+.+++
T Consensus       243 ~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll  299 (492)
T TIGR02733       243 KRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELL  299 (492)
T ss_pred             HhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhc
Confidence            3468899999999999987 568999988762 2333467785 699988887776644

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06126 hypothetical protein; Provisional

Probab=98.00  E-value=0.00012  Score=88.86  Aligned_cols=37  Identities=24%  Similarity=0.364  Sum_probs=33.0

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ...++|++|||||++|+++|..|++. |++|.|+|+.+
T Consensus         4 ~~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~   40 (545)
T PRK06126          4 NTSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKD   40 (545)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            34569999999999999999999975 99999999864

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.00  E-value=3.8e-05  Score=90.99  Aligned_cols=32  Identities=34%  Similarity=0.699  Sum_probs=30.3

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA  194 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA  194 (1381)
                      +||+||||||+||..+|.++++. |++|.++|+
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~   32 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEK   32 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence            49999999999999999999975 999999998

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.98  E-value=5e-05  Score=92.13  Aligned_cols=58  Identities=21%  Similarity=0.392  Sum_probs=45.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLL  434 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLml  434 (1381)
                      +++|+++.++++|+++.-+ +++.++|++.+. +|+++++.++ .|++|.|..-..+++..
T Consensus       399 ~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~  457 (515)
T TIGR03140       399 SLPNVDILTSAQTTEIVGD-GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKD  457 (515)
T ss_pred             cCCCCEEEECCeeEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhh
Confidence            3479999999999999754 568889998764 4666778885 79999998877777753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.97  E-value=7.4e-06  Score=95.78  Aligned_cols=37  Identities=41%  Similarity=0.700  Sum_probs=34.2

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .+||+||||||+||+++|.+++++ |.+|+|+|+|+.+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~   38 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEP   38 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence            479999999999999999999986 7999999999865

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.97  E-value=6.9e-06  Score=97.73  Aligned_cols=69  Identities=17%  Similarity=0.239  Sum_probs=50.1

Q ss_pred             CcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHc
Q psy11618        359 GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS  435 (1381)
Q Consensus       359 G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlS  435 (1381)
                      |.|-..+   +.... ++.+.++..+++|+++..+ ++++++|...  +|++.+++|+ +||+|+|+.-|..+....
T Consensus       262 G~RL~~a---L~~~~-~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~--~g~~~~l~AD-~vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       262 GIRLEEA---LKHRF-EQLGGVMLPGDRVLRAEFE-GNRVTRIHTR--NHRDIPLRAD-HFVLASGSFFSNGLVAEF  330 (419)
T ss_pred             HHHHHHH---HHHHH-HHCCCEEEECcEEEEEEee-CCeEEEEEec--CCccceEECC-EEEEccCCCcCHHHHhhc
Confidence            6665543   22222 3557899999999999987 6788887653  3445578886 699999999888886644

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR00275 flavoprotein, HI0933 family

Probab=97.91  E-value=2e-05  Score=92.60  Aligned_cols=31  Identities=39%  Similarity=0.521  Sum_probs=28.4

Q ss_pred             EEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        166 IIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       166 IIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ||||||+||+.+|.+++++ |.+|+++|+++.
T Consensus         1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~   31 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKK   31 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhc-CCcEEEEecCcc
Confidence            6999999999999999975 899999999864

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07233 hypothetical protein; Provisional

Probab=97.91  E-value=0.00012  Score=84.89  Aligned_cols=34  Identities=35%  Similarity=0.438  Sum_probs=31.1

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      +++|||||.||.++|..|+++ |++|+|+|+.+..
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~   34 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQL   34 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCC
Confidence            589999999999999999986 8999999999754

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.90  E-value=0.00013  Score=86.19  Aligned_cols=49  Identities=14%  Similarity=0.236  Sum_probs=36.9

Q ss_pred             CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCe-EEEEecCcEEEEcCCc
Q psy11618        376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGE-TVRVTANKEVILTAGA  425 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr-~~tV~ArKEVILSAGA  425 (1381)
                      +.+.+|.+|+.|++|..+++++++||++.+.+|+ .++++|+ .||+|+.+
T Consensus       225 ~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~  274 (453)
T TIGR02731       225 SRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTAD-AYVSAMPV  274 (453)
T ss_pred             hcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence            3467999999999998765678999999763332 2357774 69998875

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.87  E-value=2.5e-05  Score=81.45  Aligned_cols=61  Identities=23%  Similarity=0.312  Sum_probs=36.3

Q ss_pred             cchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcC
Q psy11618        368 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG  436 (1381)
Q Consensus       368 YL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSG  436 (1381)
                      |++..+ ++.++++..+++|+++..++ ++ --|+..  +|  ++++| +.||+|.|..+.|+....-|
T Consensus        87 yl~~~~-~~~~l~i~~~~~V~~v~~~~-~~-w~v~~~--~~--~~~~a-~~VVlAtG~~~~p~~p~~~g  147 (203)
T PF13738_consen   87 YLQEYA-ERFGLEIRFNTRVESVRRDG-DG-WTVTTR--DG--RTIRA-DRVVLATGHYSHPRIPDIPG  147 (203)
T ss_dssp             HHHHHH-HHTTGGEETS--EEEEEEET-TT-EEEEET--TS---EEEE-EEEEE---SSCSB---S-TT
T ss_pred             HHHHHH-hhcCcccccCCEEEEEEEec-cE-EEEEEE--ec--ceeee-eeEEEeeeccCCCCcccccc
Confidence            565555 56677799999999999983 33 334443  35  46667 57999999999999887665

...

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.85  E-value=9.5e-05  Score=88.14  Aligned_cols=227  Identities=20%  Similarity=0.201  Sum_probs=113.3

Q ss_pred             cCCCCCCcccCCCCcccEEEECCCchHHHHHHHHhcc----CCCeEEEEeccCCCCCccccCCccccccCCcccCccccc
Q psy11618        148 IYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEV----SSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAE  223 (1381)
Q Consensus       148 ~~p~~~~~~~~~~~~YDYIIVGGGTAG~VLAsRLSEd----pg~sVLVLEAG~d~~~~~~iP~~~~~l~~s~~DW~Y~Te  223 (1381)
                      .+|.+..........||.+|||+|++|.-.|.|+|.+    +..+|+++|.|.+.+.. ..|....              
T Consensus         4 ~~~~~~~~~~~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r-~~~~~~~--------------   68 (486)
T COG2509           4 KLPIDHDQEALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQR-LCPKDEK--------------   68 (486)
T ss_pred             cccCCCChHHHhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhh-hcccccc--------------
Confidence            3444434444556789999999999999999999976    47899999999865322 1222110              


Q ss_pred             ccccccccCCCceeecccccccCccccccceEEe-cCCc-cchHHHhhcCCCCCChhhHHHHHHHhcccccCCcccCCCC
Q psy11618        224 PSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQ-RGTS-YDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAV  301 (1381)
Q Consensus       224 Pq~~a~~gl~~r~i~~pRGKvLGGSSsINgmvy~-RGs~-~DFD~Wa~lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~  301 (1381)
                      ++ +.|..++  ++...  .+.||+...-++... |+.. .|.++.    ..+|+     +..++.+-..     +..-.
T Consensus        69 ~~-~~c~~~~--~~~I~--~G~GgaG~fs~g~lnl~P~~Gg~~~~~----~~d~~-----~~~~~~~~vd-----~~~vq  129 (486)
T COG2509          69 KL-EKCPKCD--PCPIV--IGFGGAGLFSDGILNLRPIRGGDVHER----TKDTD-----EFWELVNLVD-----ESNVQ  129 (486)
T ss_pred             ch-hhcCCCC--CceeE--ecccccccccccceecccccccchhhh----hCChH-----HHHHHHhccc-----hhhee
Confidence            11 0122222  23333  357888877777766 2220 122211    11221     1111222111     00122


Q ss_pred             CCCCCCccccCCCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEE
Q psy11618        302 HGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYV  381 (1381)
Q Consensus       302 HG~~GPL~Vs~~p~~e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtI  381 (1381)
                      ||..|.=.-  .+..  +... .  ....++|.+...-..... +.|....+-.+.      .-+.|+     +..+.++
T Consensus       130 fG~~g~~~~--~~~~--e~ik-d--~e~~aa~a~~eil~~~~r-HiGTD~l~~vvk------ni~~~l-----~~~G~ei  190 (486)
T COG2509         130 FGAPGAGTF--SDLT--EQIK-D--IEFRAAGAGEEILPIYQR-HIGTDILPKVVK------NIREYL-----ESLGGEI  190 (486)
T ss_pred             cCCCcCccc--CCch--hhhh-H--HHHHHhCCCceeeecccc-ccCccchHHHHH------HHHHHH-----HhcCcEE
Confidence            443332111  1111  1222 1  222344443221111111 344322111110      111233     3345899


Q ss_pred             EcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        382 LKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       382 LTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      ..+++|+.|+++ ++.+.+|...+  |+  ++.+ ++||+|-|-=+.--.=|
T Consensus       191 ~f~t~VeDi~~~-~~~~~~v~~~~--g~--~i~~-~~vvlA~Grsg~dw~~~  236 (486)
T COG2509         191 RFNTEVEDIEIE-DNEVLGVKLTK--GE--EIEA-DYVVLAPGRSGRDWFEM  236 (486)
T ss_pred             EeeeEEEEEEec-CCceEEEEccC--Cc--EEec-CEEEEccCcchHHHHHH
Confidence            999999999997 45566776654  54  5777 58999999555444433

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.81  E-value=0.00033  Score=91.45  Aligned_cols=61  Identities=18%  Similarity=0.201  Sum_probs=49.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      ++.++++.+++.|+++.-  ++++++|++.+.+|+.+++.++ .|+++.|..-..++....|..
T Consensus       362 ~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~  422 (985)
T TIGR01372       362 RELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK  422 (985)
T ss_pred             HHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence            467899999999999963  3578899887434566678885 799999999999999888854

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02612 phytoene desaturase

Probab=97.79  E-value=0.00016  Score=89.01  Aligned_cols=38  Identities=29%  Similarity=0.400  Sum_probs=33.1

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ..+..|++|||||.||.++|.+|++. |++|.++|+.+.
T Consensus        90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~  127 (567)
T PLN02612         90 PAKPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDV  127 (567)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCC
Confidence            33457999999999999999999975 899999999754

>PRK08244 hypothetical protein; Provisional

Probab=97.78  E-value=0.00022  Score=85.66  Aligned_cols=35  Identities=29%  Similarity=0.513  Sum_probs=32.2

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +||++|||||++|+++|..|++. |.+|.|+|+.+.
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~   36 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKE   36 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            48999999999999999999975 999999999864

>KOG4254|consensus

Probab=97.77  E-value=0.00011  Score=87.38  Aligned_cols=54  Identities=22%  Similarity=0.357  Sum_probs=43.3

Q ss_pred             chhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhH
Q psy11618        369 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA  429 (1381)
Q Consensus       369 L~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SP  429 (1381)
                      +.+.+ +|.+-+|.|+++|++|+.| +++|+||...|  |+  ++++ |-||=-|+-.+|=
T Consensus       270 ia~~~-~~~GaeI~tka~Vq~Illd-~gka~GV~L~d--G~--ev~s-k~VvSNAt~~~Tf  323 (561)
T KOG4254|consen  270 IAEGA-KRAGAEIFTKATVQSILLD-SGKAVGVRLAD--GT--EVRS-KIVVSNATPWDTF  323 (561)
T ss_pred             HHHHH-Hhccceeeehhhhhheecc-CCeEEEEEecC--Cc--EEEe-eeeecCCchHHHH
Confidence            33445 7889999999999999999 58999999986  76  4555 5677778877776

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.77  E-value=0.00021  Score=86.18  Aligned_cols=37  Identities=27%  Similarity=0.358  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++.|++|||||+||.++|.++.++ |.+|.++|++++
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~   44 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQ   44 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCC
Confidence            3458999999999999999999976 899999999964

>PRK11445 putative oxidoreductase; Provisional

Probab=97.76  E-value=0.00028  Score=81.33  Aligned_cols=34  Identities=32%  Similarity=0.550  Sum_probs=30.6

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .||++|||||+||+++|..|+++  .+|+++|+.+.
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~   34 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQ   34 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCc
Confidence            48999999999999999999974  89999998863

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.76  E-value=0.00012  Score=88.26  Aligned_cols=57  Identities=16%  Similarity=0.165  Sum_probs=41.9

Q ss_pred             CCCCeEEEcCcEEEEEEecC--CC--eEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIIND--QN--VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~--g~--RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      ++++.+|.+|++|++|..++  ++  +++||+..+.+| ..++.|+ .||+|+.+-++.+++-
T Consensus       230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~~aD-~VVlA~p~~~~~~Ll~  290 (474)
T TIGR02732       230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVIKAD-AYVAACDVPGIKRLLP  290 (474)
T ss_pred             HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEEECC-EEEECCChHHHHhhCC
Confidence            35678999999999999863  22  489998854222 2346775 6999999888888763

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.76  E-value=0.00018  Score=88.19  Aligned_cols=35  Identities=29%  Similarity=0.504  Sum_probs=31.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +.||++|||||+||..+|.++++. +++|+++|++.
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~   37 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDD   37 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence            459999999999999999999975 89999999874

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.74  E-value=2.5e-05  Score=92.33  Aligned_cols=47  Identities=30%  Similarity=0.548  Sum_probs=36.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +.+|++|. +++|+.|..+ +++++||...  +|+  +++|+ -||+|+|++..
T Consensus       107 ~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~--~g~--~~~a~-~vVlaTGtfl~  153 (392)
T PF01134_consen  107 SHPNLTII-QGEVTDLIVE-NGKVKGVVTK--DGE--EIEAD-AVVLATGTFLN  153 (392)
T ss_dssp             TSTTEEEE-ES-EEEEEEC-TTEEEEEEET--TSE--EEEEC-EEEE-TTTGBT
T ss_pred             cCCCeEEE-EcccceEEec-CCeEEEEEeC--CCC--EEecC-EEEEecccccC
Confidence            67999997 6799999998 7899999775  466  56674 69999999443

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PLN02487 zeta-carotene desaturase

Probab=97.71  E-value=0.00012  Score=90.30  Aligned_cols=56  Identities=14%  Similarity=0.126  Sum_probs=41.4

Q ss_pred             CCCCeEEEcCcEEEEEEecC--CC--eEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIIND--QN--VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL  432 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~--g~--RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLL  432 (1381)
                      ++.+.+|.+++.|++|+.++  ++  +++||++.+ +|+...+.| +.||++++.-...+++
T Consensus       306 ~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~~a-D~VV~A~p~~~~~~Ll  365 (569)
T PLN02487        306 TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIVKA-DAYVAACDVPGIKRLL  365 (569)
T ss_pred             HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEEEC-CEEEECCCHHHHHHhC
Confidence            46788999999999999972  22  599999864 344445667 4699988877666655

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.69  E-value=0.0002  Score=88.80  Aligned_cols=33  Identities=33%  Similarity=0.583  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ||+||||||.||+.+|..+++. |.+|.++|.++
T Consensus         1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCCEEEEeccc
Confidence            7999999999999999999975 89999999974

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>KOG0042|consensus

Probab=97.69  E-value=1.2e-05  Score=96.72  Aligned_cols=80  Identities=18%  Similarity=0.194  Sum_probs=59.9

Q ss_pred             CcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCC
Q psy11618        346 DVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG  424 (1381)
Q Consensus       346 ~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAG  424 (1381)
                      -.|..-....+.|..|...+-+.=  +  .|.+.+++-+.+|.+++-|+++++.|++++|+ .|++++++| |-||=|+|
T Consensus       210 L~Ga~VYyDGQ~nDaRmnl~vAlT--A--~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~A-k~VVNATG  284 (680)
T KOG0042|consen  210 LKGAMVYYDGQHNDARMNLAVALT--A--ARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRA-KVVVNATG  284 (680)
T ss_pred             ceeEEEEecCCCchHHHHHHHHHH--H--HhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEE-EEEEeCCC
Confidence            345443333455667776654321  2  47889999999999999987779999999997 899999999 57999999


Q ss_pred             chhhHH
Q psy11618        425 AIANAQ  430 (1381)
Q Consensus       425 AI~SPq  430 (1381)
                      -+.-.-
T Consensus       285 pfsDsI  290 (680)
T KOG0042|consen  285 PFSDSI  290 (680)
T ss_pred             CccHHH
Confidence            775443

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.64  E-value=0.00028  Score=82.29  Aligned_cols=33  Identities=42%  Similarity=0.591  Sum_probs=31.3

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      ++|++|||||+||+++|..|+++ |++|.++|+-
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence            58999999999999999999976 8999999998

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.63  E-value=4.8e-05  Score=91.30  Aligned_cols=55  Identities=22%  Similarity=0.331  Sum_probs=37.2

Q ss_pred             chhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCC
Q psy11618        363 SAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAG  424 (1381)
Q Consensus       363 SAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAG  424 (1381)
                      ...+.+|...+ .+.+++++.+ +|+++..++++++++|+..+  |+  +++|+ -||=|+|
T Consensus       154 ~~fd~~L~~~A-~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~--g~--~i~ad-~~IDASG  208 (454)
T PF04820_consen  154 AKFDQFLRRHA-EERGVEVIEG-TVVDVELDEDGRITAVRLDD--GR--TIEAD-FFIDASG  208 (454)
T ss_dssp             HHHHHHHHHHH-HHTT-EEEET--EEEEEE-TTSEEEEEEETT--SE--EEEES-EEEE-SG
T ss_pred             HHHHHHHHHHH-hcCCCEEEeC-EEEEEEEcCCCCEEEEEECC--CC--EEEEe-EEEECCC
Confidence            34556776554 4569999987 58888888778899998765  54  67784 6777777

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK10262 thioredoxin reductase; Provisional

Probab=97.53  E-value=0.00051  Score=77.77  Aligned_cols=60  Identities=13%  Similarity=0.213  Sum_probs=44.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec--CCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS--KGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~--~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.|+++.++++|+++.-+ ++++++|++.+.  +|++.++.+ +.||+|.|..-...+.. +++
T Consensus       196 ~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~-D~vv~a~G~~p~~~l~~-~~l  257 (321)
T PRK10262        196 ENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDV-AGLFVAIGHSPNTAIFE-GQL  257 (321)
T ss_pred             cCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEEC-CEEEEEeCCccChhHhh-ccc
Confidence            4678999999999999644 456889988763  244567888 47999999776666553 454

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.51  E-value=0.00048  Score=78.16  Aligned_cols=65  Identities=25%  Similarity=0.225  Sum_probs=43.3

Q ss_pred             CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccC
Q psy11618        376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEV  446 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~l  446 (1381)
                      ..|++|..+++|+++... ++ ---+...  +|.+ ...+ +.|+++.=|=+|+.+|--|.++-++.++..
T Consensus       115 AtdL~V~~~~rVt~v~~~-~~-~W~l~~~--~g~~-~~~~-d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~  179 (331)
T COG3380         115 ATDLTVVLETRVTEVART-DN-DWTLHTD--DGTR-HTQF-DDVVLAIPAPQTATLLTTDADDLPAALRAA  179 (331)
T ss_pred             hccchhhhhhhhhhheec-CC-eeEEEec--CCCc-cccc-ceEEEecCCCcchhhcCcccccchHHHHHh
Confidence            358999999999999875 22 1122222  3433 2334 479999999999999977655555555443

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.47  E-value=0.00012  Score=87.81  Aligned_cols=38  Identities=26%  Similarity=0.421  Sum_probs=33.9

Q ss_pred             CCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        158 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       158 ~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ..+.+||++|||||+||+++|..||++ |.+|+++|+.+
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~   72 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKL   72 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence            455679999999999999999999975 99999999964

>KOG2415|consensus

Probab=97.46  E-value=0.0011  Score=78.49  Aligned_cols=83  Identities=12%  Similarity=0.189  Sum_probs=53.3

Q ss_pred             hhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec----CCe-------EEEEecCcEEEEcCCchh--hHHH
Q psy11618        365 ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----KGE-------TVRVTANKEVILTAGAIA--NAQL  431 (1381)
Q Consensus       365 a~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~----~Gr-------~~tV~ArKEVILSAGAI~--SPqL  431 (1381)
                      ...|+..-+ +.-+++|..+.-+..+++|+++.+.||...|.    +|.       -...+| |.-|.|-|.=+  |-|+
T Consensus       185 ~v~wLg~kA-Ee~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~ha-k~TifAEGc~G~Lskqi  262 (621)
T KOG2415|consen  185 LVRWLGEKA-EELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHA-KVTIFAEGCHGSLSKQI  262 (621)
T ss_pred             HHHHHHHHH-HhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecc-eeEEEeccccchhHHHH
Confidence            334554434 55688889999999999987778889876552    332       234666 46777777554  5788


Q ss_pred             HHHcCCCCCCccccCCCC
Q psy11618        432 LLLSGIGPKAHLDEVKIP  449 (1381)
Q Consensus       432 LmlSGIGPkd~Le~lGIp  449 (1381)
                      +..=+..-..|=+..||.
T Consensus       263 ~kkf~Lr~n~e~qtYglG  280 (621)
T KOG2415|consen  263 IKKFDLRENCEPQTYGLG  280 (621)
T ss_pred             HHHhCcccCCCcceeccc
Confidence            877655433444444443

>PRK07538 hypothetical protein; Provisional

Probab=97.44  E-value=0.00074  Score=79.21  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      |++|||||+||+++|..|+++ |.+|.++|+.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~   33 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAP   33 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCC
Confidence            899999999999999999975 99999999975

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.43  E-value=0.0013  Score=79.04  Aligned_cols=61  Identities=21%  Similarity=0.242  Sum_probs=44.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec----------CCeEEEEecCcEEEEcCCchh-hHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS----------KGETVRVTANKEVILTAGAIA-NAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~----------~Gr~~tV~ArKEVILSAGAI~-SPqLLmlSGI  437 (1381)
                      .+.++++.+++++++|.-+ +++++||++.+.          +|+++++.++ .||+|.|.-. +..++...|+
T Consensus       340 ~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~gl  411 (471)
T PRK12810        340 HEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFGV  411 (471)
T ss_pred             HHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccCc
Confidence            3568999999999999754 678999987521          2556778885 7999999443 3456655554

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.00019  Score=83.07  Aligned_cols=71  Identities=21%  Similarity=0.331  Sum_probs=56.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD  453 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvD  453 (1381)
                      +-+|.+|.+|++-+.|.=| |.+++|.+|+|+ +|+++++.-. -|.+--|-+-..++|.=|     -++++.| +.++|
T Consensus       401 sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~-----vel~~rG-EIivD  472 (520)
T COG3634         401 SLPNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA-----VELNRRG-EIIVD  472 (520)
T ss_pred             cCCCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch-----hhcCcCc-cEEEe
Confidence            5689999999999999876 789999999997 6888888774 588888988888888744     2455555 34444

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.40  E-value=0.0005  Score=83.17  Aligned_cols=33  Identities=24%  Similarity=0.509  Sum_probs=30.6

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      +||+||||||+||..+|.++++. |+||.++|++
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            59999999999999999999986 9999999973

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.39  E-value=0.00015  Score=84.61  Aligned_cols=35  Identities=49%  Similarity=0.703  Sum_probs=31.0

Q ss_pred             cEEEECCCchHHHHHHHHhc-cCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSE-dpg~sVLVLEAG~d~  198 (1381)
                      |+||||||+||+.+|.++++ ++|.||++||+.++.
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            99999999999999999933 369999999998754

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.39  E-value=0.0033  Score=75.40  Aligned_cols=37  Identities=24%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+.+|++|||||+||..+|.++++. |++|.++|+.+.
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~  167 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHK  167 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            3568999999999999999999975 899999998753

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.38  E-value=0.00018  Score=79.72  Aligned_cols=36  Identities=36%  Similarity=0.508  Sum_probs=30.9

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      +||++|||||+||+++|..|+++ |++|.++|+.++.
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhc-ccccccchhcccc
Confidence            58999999999999999999976 9999999997654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=97.37  E-value=0.00017  Score=78.61  Aligned_cols=34  Identities=41%  Similarity=0.692  Sum_probs=31.7

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ||++|||||+||+++|.+|+++ |.+|.|+|+++.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~   34 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSF   34 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence            7999999999999999999975 999999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.34  E-value=0.0011  Score=80.38  Aligned_cols=60  Identities=27%  Similarity=0.358  Sum_probs=49.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      .+.+.++.++++|++|..+ +++++||++.|. +|++.+++|+ .||.|||+ .+.++....|+
T Consensus       139 ~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~g~  199 (516)
T TIGR03377       139 QEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGI-WAGRIAEYAGL  199 (516)
T ss_pred             HHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCc-chHHHHHhcCC
Confidence            4668999999999999886 678999999764 5667789995 69999995 57888887775

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.31  E-value=0.00021  Score=83.22  Aligned_cols=32  Identities=22%  Similarity=0.618  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      ||+||||||+||+++|.+|++. |.+|+++|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARA-GIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence            8999999999999999999975 9999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>KOG2665|consensus

Probab=97.30  E-value=0.0013  Score=75.85  Aligned_cols=40  Identities=33%  Similarity=0.482  Sum_probs=35.3

Q ss_pred             CCCCcccEEEECCCchHHHHHHHHh-ccCCCeEEEEeccCC
Q psy11618        158 KSGDCFDIIIVGASAAGCVLANRLS-EVSSLKVLLIEAGGD  197 (1381)
Q Consensus       158 ~~~~~YDYIIVGGGTAG~VLAsRLS-Edpg~sVLVLEAG~d  197 (1381)
                      ...++||.+|||||..|++.|++|+ +.|+.+|.++|+-.+
T Consensus        44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~   84 (453)
T KOG2665|consen   44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS   84 (453)
T ss_pred             cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence            3456799999999999999999999 559999999999764

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.28  E-value=0.00019  Score=79.22  Aligned_cols=37  Identities=38%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +..+||++|||||+||.++|..||++ |.||+++|++.
T Consensus        14 ~~~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~   50 (230)
T PF01946_consen   14 DYLEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKL   50 (230)
T ss_dssp             HHTEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSS
T ss_pred             hhccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCC
Confidence            34579999999999999999999987 99999999973

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.26  E-value=0.00066  Score=81.82  Aligned_cols=33  Identities=36%  Similarity=0.510  Sum_probs=30.2

Q ss_pred             EEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        165 IIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       165 YIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      ++|||||.||..+|.||.++ |+.+|.++|++++
T Consensus         3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r   36 (444)
T COG1232           3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR   36 (444)
T ss_pred             EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            69999999999999999976 6699999999964

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.25  E-value=0.003  Score=74.66  Aligned_cols=55  Identities=20%  Similarity=0.265  Sum_probs=39.7

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.+.++.++++|+++.-  +++.++|+.   +|+  ++.++ .||+|+|..-+..++..+|+
T Consensus       202 ~~~gI~v~~~~~v~~i~~--~~~~~~v~~---~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl  256 (444)
T PRK09564        202 RENGVELHLNEFVKSLIG--EDKVEGVVT---DKG--EYEAD-VVIVATGVKPNTEFLEDTGL  256 (444)
T ss_pred             HHCCCEEEcCCEEEEEec--CCcEEEEEe---CCC--EEEcC-EEEECcCCCcCHHHHHhcCc
Confidence            466899999999999953  344555543   233  36674 79999998766678888886

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.24  E-value=0.0003  Score=81.23  Aligned_cols=36  Identities=31%  Similarity=0.424  Sum_probs=32.8

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++||+||||||+||+++|..|+++ |++|.++|+.+
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~   38 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA   38 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence            4569999999999999999999975 99999999975

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.22  E-value=0.00031  Score=82.23  Aligned_cols=33  Identities=42%  Similarity=0.663  Sum_probs=31.0

Q ss_pred             cEEEECCCchHHHHHHHHhcc-CCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~  196 (1381)
                      |+||||||.||+.+|.+|+++ +|++|+++|+++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~   34 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR   34 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            899999999999999999974 699999999986

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.20  E-value=0.00057  Score=83.22  Aligned_cols=36  Identities=28%  Similarity=0.404  Sum_probs=30.2

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ++||+||||||-|||-+|..-|+ -|.+++++--..|
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaAR-mG~ktlLlT~~~d   38 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAAR-MGAKTLLLTLNLD   38 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhc-cCCeEEEEEcCCC
Confidence            35999999999999999988775 4889998876654

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.17  E-value=0.00033  Score=82.99  Aligned_cols=36  Identities=31%  Similarity=0.484  Sum_probs=32.6

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ++||+||||||+||..+|.++++. |++|+++|+++.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~   37 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNA   37 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCC
Confidence            369999999999999999999986 899999999753

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.0014  Score=75.52  Aligned_cols=59  Identities=27%  Similarity=0.436  Sum_probs=44.9

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      +++|.++.+|+++++|.=+ +  +.+|+..+.+|++...... -|.++-|..-.-.+++..|+
T Consensus       190 ~~~~i~~~~~~~i~ei~G~-~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~~  248 (305)
T COG0492         190 KNVKIEVLTNTVVKEILGD-D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLGV  248 (305)
T ss_pred             hcCCeEEEeCCceeEEecC-c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhccc
Confidence            5669999999999999755 3  8899998743666666664 58888887766677776654

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.15  E-value=0.00042  Score=79.74  Aligned_cols=35  Identities=31%  Similarity=0.552  Sum_probs=32.5

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ++|++|||||+||+++|..|++. |.+|.|+|+++.
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~   39 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP   39 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence            58999999999999999999975 999999999975

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.13  E-value=0.00042  Score=82.36  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=32.8

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++||++|||||+||..+|.++++. |++|.++|+++
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~   38 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYR   38 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccc
Confidence            4569999999999999999999986 89999999864

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.11  E-value=0.0026  Score=75.58  Aligned_cols=38  Identities=13%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ..++.++||||||.||..+|.+|.+ ++.+|.++|.-+.
T Consensus         7 ~~~~~~vVIvGgG~aGl~~a~~L~~-~~~~ItlI~~~~~   44 (424)
T PTZ00318          7 RLKKPNVVVLGTGWAGAYFVRNLDP-KKYNITVISPRNH   44 (424)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHhCc-CCCeEEEEcCCCC
Confidence            3455799999999999999999974 4789999998764

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.11  E-value=0.0005  Score=79.37  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=32.8

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++||+||||||++|+++|..|++. |.+|.++|+.+
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~   40 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEP   40 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCC
Confidence            4569999999999999999999975 99999999975

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.09  E-value=0.00038  Score=80.38  Aligned_cols=35  Identities=34%  Similarity=0.619  Sum_probs=31.2

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .|||+|||||-+|+|+|+.+|+. |++|+++|+-+.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~H   35 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNH   35 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHc-CCEEEEEecccc
Confidence            48999999999999999977764 999999999764

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.09  E-value=0.0066  Score=79.85  Aligned_cols=58  Identities=17%  Similarity=0.264  Sum_probs=43.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-------cCC--------eEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-------SKG--------ETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-------~~G--------r~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      .+.++++.+++.+++|.-+++++++||++.+       .+|        +++++.++ .||+|.|-...+.++.
T Consensus       620 ~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~  692 (1006)
T PRK12775        620 KEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECD-TVIYALGTKANPIITQ  692 (1006)
T ss_pred             HhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcC-EEEECCCcCCChhhhh
Confidence            4679999999999999876567899998752       123        34568885 7999999766655443

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.08  E-value=0.00042  Score=82.87  Aligned_cols=34  Identities=32%  Similarity=0.562  Sum_probs=31.6

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      ++||++|||||+||..+|.++++. |+||+++|++
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~   34 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEH-GAKALLVEAK   34 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEeccc
Confidence            469999999999999999999986 9999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PLN02463 lycopene beta cyclase

Probab=97.07  E-value=0.00054  Score=82.51  Aligned_cols=37  Identities=30%  Similarity=0.520  Sum_probs=33.0

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ...+||++|||||+||+.+|.+++++ |.+|.++|+.+
T Consensus        25 ~~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~   61 (447)
T PLN02463         25 KSRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSP   61 (447)
T ss_pred             cccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCc
Confidence            44569999999999999999999975 99999999864

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.06  E-value=0.0019  Score=83.72  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +...+.|||||+||..+|..|++. |++|.+.|+.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence            456899999999999999999975 99999999864

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.04  E-value=0.00054  Score=81.17  Aligned_cols=35  Identities=34%  Similarity=0.541  Sum_probs=32.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++||++|||||+||..+|.++++. |++|.++|+++
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~   36 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESK   36 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCC
Confidence            369999999999999999999975 89999999975

>PRK09126 hypothetical protein; Provisional

Probab=97.03  E-value=0.00053  Score=79.13  Aligned_cols=35  Identities=43%  Similarity=0.499  Sum_probs=32.8

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +||++|||||+||+++|..|+++ |.+|.|+|+++.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence            58999999999999999999976 999999999975

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.02  E-value=0.00068  Score=78.60  Aligned_cols=37  Identities=30%  Similarity=0.398  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ..++|++|||||+||+++|..|+++ |.+|.++|+.+.
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~   40 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGREP   40 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCC
Confidence            3568999999999999999999975 999999999863

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.01  E-value=0.0063  Score=71.44  Aligned_cols=55  Identities=22%  Similarity=0.302  Sum_probs=39.2

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.++++.++++|+++.-+  + .+.|+..  +|+  ++.+ +.||+|+|..-...+...+|+
T Consensus       197 ~~~GV~i~~~~~V~~i~~~--~-~~~v~l~--~g~--~i~a-D~Vv~a~G~~pn~~l~~~~gl  251 (396)
T PRK09754        197 QQAGVRILLNNAIEHVVDG--E-KVELTLQ--SGE--TLQA-DVVIYGIGISANDQLAREANL  251 (396)
T ss_pred             HHCCCEEEeCCeeEEEEcC--C-EEEEEEC--CCC--EEEC-CEEEECCCCChhhHHHHhcCC
Confidence            4668999999999998542  2 2234432  465  4666 479999998877778777776

>PRK06116 glutathione reductase; Validated

Probab=97.00  E-value=0.00062  Score=80.92  Aligned_cols=34  Identities=38%  Similarity=0.568  Sum_probs=31.6

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      .+||++|||||+||..+|.++++. |++|+++|++
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            469999999999999999999986 9999999986

>TIGR02028 ChlP geranylgeranyl reductase

Probab=96.99  E-value=0.00064  Score=80.03  Aligned_cols=32  Identities=25%  Similarity=0.516  Sum_probs=29.9

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      +|++|||||+||+++|..+++. |.+|+++|+.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~   32 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERK   32 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecC
Confidence            6999999999999999999975 9999999985

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.98  E-value=0.0049  Score=77.28  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=32.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +..|++|||||+||..+|..|++. |++|.++|+.+.
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~  361 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPE  361 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence            456999999999999999999975 899999998764

>KOG3851|consensus

Probab=96.98  E-value=0.0065  Score=70.44  Aligned_cols=243  Identities=16%  Similarity=0.209  Sum_probs=125.9

Q ss_pred             CCCCcccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC--CCccccCC-ccc----------cccCCcccCcccc-
Q psy11618        158 KSGDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT--PIHSRIPG-MSS----------VLSLSEFDHAYLA-  222 (1381)
Q Consensus       158 ~~~~~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~--~~~~~iP~-~~~----------~l~~s~~DW~Y~T-  222 (1381)
                      ...+++.+.|||||++|+.+|++.++. +.-+|-++|--.+.  .+.-..-+ ...          +...+...|--+. 
T Consensus        35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv  114 (446)
T KOG3851|consen   35 FARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKV  114 (446)
T ss_pred             hcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHH
Confidence            345689999999999999999999976 66799999976543  11111000 000          1111223343211 


Q ss_pred             ---cccccccccCCCceeecccccccCcc-ccccceEEecCCccchHHHhh----cCC----CCCChhhHHHHHHHhccc
Q psy11618        223 ---EPSQFAGLGVRNARIKITAGKGLGGS-SAVQNILYQRGTSYDYENFAK----LGY----NGWGYDETLKYFVKSEDY  290 (1381)
Q Consensus       223 ---ePq~~a~~gl~~r~i~~pRGKvLGGS-SsINgmvy~RGs~~DFD~Wa~----lGn----~GWswedLlPYFkKsE~~  290 (1381)
                         +|+++         ....|    ||- =+-.+|+-.-|-.-|||....    ...    +.+|-.-++..|++.+++
T Consensus       115 ~~f~P~~N---------~v~t~----gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~f  181 (446)
T KOG3851|consen  115 KEFNPDKN---------TVVTR----GGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNF  181 (446)
T ss_pred             HhcCCCcC---------eEEcc----CCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhc
Confidence               22221         11111    121 133456666677777876542    222    356777899999999988


Q ss_pred             ccCCcccCCCCCCCCCCccccCCCCCCCchHHHHHHHH-HHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcc
Q psy11618        291 RSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS-AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYL  369 (1381)
Q Consensus       291 ~~p~~~~d~~~HG~~GPL~Vs~~p~~e~~pl~~~f~eA-~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL  369 (1381)
                      ....    .-+.-.++|++..-.|..    +. .+.|+ +++.|.+.+.+.  -. .++..     .--|.++.+. | +
T Consensus       182 k~GN----AIfTfPntpiKCAGAPQK----i~-yise~y~Rk~gvRd~a~i--iy-~Tsl~-----~iFgVk~Y~~-A-L  242 (446)
T KOG3851|consen  182 KKGN----AIFTFPNTPIKCAGAPQK----IM-YISESYFRKRGVRDNANI--IY-NTSLP-----TIFGVKHYAD-A-L  242 (446)
T ss_pred             cCCc----eEEecCCCccccCCCchh----hh-hhhHHHHHHhCccccccE--EE-ecCcc-----ceecHHHHHH-H-H
Confidence            5321    222234677776543322    21 12222 456776533221  00 01111     1134444432 2 3


Q ss_pred             hhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        370 TPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       370 ~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      .... +++|++|-+.-.-.+|..+ +++|+ -|-.|+.|++.+++=  +..=..-...||..+..|..
T Consensus       243 ~k~~-~~rni~vn~krnLiEV~~~-~~~Av-Fe~L~kPG~t~ei~y--slLHv~Ppms~pe~l~~s~~  305 (446)
T KOG3851|consen  243 EKVI-QERNITVNYKRNLIEVRTN-DRKAV-FENLDKPGVTEEIEY--SLLHVTPPMSTPEVLANSDL  305 (446)
T ss_pred             HHHH-HhcceEeeeccceEEEecc-chhhH-HHhcCCCCceeEEee--eeeeccCCCCChhhhhcCcc
Confidence            3344 6889999988888888776 34442 122222355444332  22223335667777777753

>PRK06370 mercuric reductase; Validated

Probab=96.98  E-value=0.00071  Score=80.79  Aligned_cols=36  Identities=42%  Similarity=0.604  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++||+||||||+||..+|.++++. |++|.++|+++
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~   38 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL   38 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence            3569999999999999999999986 99999999863

>PTZ00058 glutathione reductase; Provisional

Probab=96.97  E-value=0.00078  Score=83.26  Aligned_cols=36  Identities=28%  Similarity=0.493  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      ...+||+||||||+||..+|.|+++. |+||+++|++
T Consensus        45 ~~~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~   80 (561)
T PTZ00058         45 PRMVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKD   80 (561)
T ss_pred             CCccccEEEECcCHHHHHHHHHHHHc-CCeEEEEecc
Confidence            34679999999999999999999976 8999999985

>PRK06996 hypothetical protein; Provisional

Probab=96.97  E-value=0.00073  Score=78.99  Aligned_cols=40  Identities=40%  Similarity=0.517  Sum_probs=34.3

Q ss_pred             cCCCCcccEEEECCCchHHHHHHHHhccC---CCeEEEEeccC
Q psy11618        157 VKSGDCFDIIIVGASAAGCVLANRLSEVS---SLKVLLIEAGG  196 (1381)
Q Consensus       157 ~~~~~~YDYIIVGGGTAG~VLAsRLSEdp---g~sVLVLEAG~  196 (1381)
                      .+..++||++|||||++|+++|..|++..   |.+|.++|+.+
T Consensus         6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            35567899999999999999999999753   36899999975

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.97  E-value=0.00067  Score=80.77  Aligned_cols=36  Identities=33%  Similarity=0.550  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ..+||+||||||+||..+|.++++. |++|+++|+++
T Consensus         2 ~~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~   37 (462)
T PRK06416          2 AFEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK   37 (462)
T ss_pred             CccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence            3569999999999999999999986 99999999864

>PRK08013 oxidoreductase; Provisional

Probab=96.96  E-value=0.00077  Score=78.82  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=32.5

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +||++|||||+||+++|..|++. |.+|.++|+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence            58999999999999999999975 999999999875

>PRK07045 putative monooxygenase; Reviewed

Probab=96.96  E-value=0.00078  Score=78.03  Aligned_cols=38  Identities=26%  Similarity=0.405  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ++++|++|||||+||+++|.-|+++ |.+|.|+|+.+..
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~~   40 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAARN   40 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCcc
Confidence            3568999999999999999999975 9999999999743

>PLN02529 lysine-specific histone demethylase 1

Probab=96.95  E-value=0.0052  Score=78.33  Aligned_cols=37  Identities=35%  Similarity=0.478  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++.|++|||||.||..+|.+|++. |++|.++|+.+.
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~  194 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNR  194 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCcc
Confidence            4568999999999999999999975 999999999754

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.95  E-value=0.00089  Score=60.99  Aligned_cols=31  Identities=26%  Similarity=0.394  Sum_probs=27.7

Q ss_pred             EECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        167 IVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       167 IVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      |||||.||.++|.+|+++ +++|.|+|+.++.
T Consensus         1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~   31 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRL   31 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT-TSEEEEEESSSSS
T ss_pred             CEeeCHHHHHHHHHHHHC-CCcEEEEecCccc
Confidence            899999999999999986 9999999999754

...

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.94  E-value=0.008  Score=74.53  Aligned_cols=53  Identities=19%  Similarity=0.299  Sum_probs=45.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .++|++++.++.|++++.|+++|++||...+. +|+.+.++|+ -||+|+|.++.
T Consensus       137 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  190 (570)
T PRK05675        137 LKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSK-ATVLATGGAGR  190 (570)
T ss_pred             hccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence            46799999999999999865689999998653 7888889995 89999999885

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=96.94  E-value=0.00075  Score=79.84  Aligned_cols=35  Identities=46%  Similarity=0.694  Sum_probs=31.4

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .||++|||||.||+++|.+|++. |.+|+|+|+++.
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~   35 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNH   35 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence            37999999999999999999975 899999999643

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=96.92  E-value=0.00071  Score=80.59  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=31.0

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      +||++|||||+||..+|.++++. |+||+++|++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence            59999999999999999999986 9999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=96.91  E-value=0.00077  Score=77.85  Aligned_cols=33  Identities=33%  Similarity=0.523  Sum_probs=30.3

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      |+||||||+||+.+|.+++++ |.||+++|++++
T Consensus         1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~   33 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPP   33 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCC
Confidence            899999999999999999965 999999998853

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.91  E-value=0.00083  Score=80.51  Aligned_cols=34  Identities=35%  Similarity=0.659  Sum_probs=31.8

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      ++||+||||||+||..+|.++++. |++|+++|++
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~   36 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKG   36 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc
Confidence            579999999999999999999985 9999999986

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.90  E-value=0.00086  Score=77.56  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=32.4

Q ss_pred             cccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      .||++|||||+||+++|..|++. +|.+|.++|+.+.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            48999999999999999999986 3699999999863

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.88  E-value=0.00084  Score=78.20  Aligned_cols=34  Identities=41%  Similarity=0.608  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +||++|||||+||+++|..|++. |.+|.|+|+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence            58999999999999999999975 99999999986

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=96.88  E-value=0.0028  Score=77.99  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=26.9

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++|||||+||.++|+.+-|+ |.+|.+.|+.++
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~   35 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDD   35 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSS
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCC
Confidence            479999999999999999986 999999998864

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG2820|consensus

Probab=96.88  E-value=0.0077  Score=70.32  Aligned_cols=38  Identities=34%  Similarity=0.297  Sum_probs=33.8

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +.+..|+||||+|.=||..|.+|+++ +.|++++|+=+-
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK~-g~killLeqf~~   41 (399)
T KOG2820|consen    4 MVKSRDVIIVGAGVFGLSTAYELAKR-GDKILLLEQFPL   41 (399)
T ss_pred             cccceeEEEEcccccchHHHHHHHhc-CCeEEEEeccCC
Confidence            34568999999999999999999987 799999999764

>PRK14694 putative mercuric reductase; Provisional

Probab=96.87  E-value=0.00094  Score=80.07  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=33.7

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +.++||+||||||+||.++|.++++. |+||.++|++.
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~   39 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT   39 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence            45689999999999999999999986 89999999874

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.87  E-value=0.0094  Score=69.38  Aligned_cols=57  Identities=18%  Similarity=0.239  Sum_probs=41.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      ++.|+++.++++|+++.-+ +++ ..|+..  +|+  ++.++ .||+|+|.-..+++...+|+.
T Consensus       194 ~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~--~g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~  250 (377)
T PRK04965        194 TEMGVHLLLKSQLQGLEKT-DSG-IRATLD--SGR--SIEVD-AVIAAAGLRPNTALARRAGLA  250 (377)
T ss_pred             HhCCCEEEECCeEEEEEcc-CCE-EEEEEc--CCc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence            4678999999999999765 222 335443  454  46674 799999988777888888864

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=96.85  E-value=0.0015  Score=79.72  Aligned_cols=52  Identities=21%  Similarity=0.374  Sum_probs=39.7

Q ss_pred             cccccCCCCCCccc--CCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        144 YRSVIYPPDMTPYV--KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       144 ~~~~~~p~~~~~~~--~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      |+...|+-++....  ....++|++|||||++|+++|..|++. |.+|.++|+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~   56 (547)
T PRK08132          3 YQTPKFPYRPHADQDADDPARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDD   56 (547)
T ss_pred             CcccCccCCCCccccCCCCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence            34445555543332  223579999999999999999999975 99999999986

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.85  E-value=0.001  Score=79.91  Aligned_cols=32  Identities=31%  Similarity=0.591  Sum_probs=30.3

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA  194 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA  194 (1381)
                      +||++|||||+||..+|.++++. |+||+++|+
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~   34 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEG   34 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence            59999999999999999999985 999999996

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=96.84  E-value=0.00089  Score=74.28  Aligned_cols=36  Identities=36%  Similarity=0.387  Sum_probs=32.4

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      +..+-|+|||||||||.++|++|||+ +.||.++|+-
T Consensus        27 ~~~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~   62 (262)
T COG1635          27 DYLESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERK   62 (262)
T ss_pred             hhhhccEEEECcCcchHHHHHHHHhC-CceEEEEEee
Confidence            34567999999999999999999987 9999999975

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=96.82  E-value=0.0011  Score=75.69  Aligned_cols=34  Identities=44%  Similarity=0.579  Sum_probs=31.7

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      |++|||||+||+++|..|+++ |.+|+|+|+.+.+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCcc
Confidence            899999999999999999976 9999999999754

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>KOG1399|consensus

Probab=96.80  E-value=0.0038  Score=75.59  Aligned_cols=69  Identities=19%  Similarity=0.214  Sum_probs=45.9

Q ss_pred             hcchhhhcCCCCe--EEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        367 AYLTPIAGKRTNL--YVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       367 AYL~Pa~~~R~NL--tILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      .|+...+ ++-++  +|..+++|.|+...++ ..-.|.+.+..++...-.. +-|++|.|-...|++=+.+|.|
T Consensus        94 ~YL~~yA-~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~~~~~if-d~VvVctGh~~~P~~P~~~g~~  164 (448)
T KOG1399|consen   94 EYLRDYA-KHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQIEEEIF-DAVVVCTGHYVEPRIPQIPGPG  164 (448)
T ss_pred             HHHHHHH-HhcChhhheEecccEEEEeeccC-CceeEEEecCCcceeEEEe-eEEEEcccCcCCCCCCcCCCCc
Confidence            5776665 55555  7888998888876521 3556777663332122222 3599999999559998888876

>PLN02697 lycopene epsilon cyclase

Probab=96.79  E-value=0.0014  Score=80.71  Aligned_cols=36  Identities=28%  Similarity=0.506  Sum_probs=32.1

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      .+.+||++|||||+||+.+|.++++. |.+|+++|++
T Consensus       105 ~~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~  140 (529)
T PLN02697        105 GDGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD  140 (529)
T ss_pred             ccCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence            34579999999999999999999975 9999999864

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.79  E-value=0.0012  Score=79.59  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=31.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .+||+||||||+||..+|.|+++. |++|.++|+++
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~   37 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYS   37 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence            469999999999999999999975 99999999863

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.75  E-value=0.0013  Score=78.37  Aligned_cols=34  Identities=44%  Similarity=0.737  Sum_probs=31.2

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      ++||+||||||+||..+|.++++. |++|+++|++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            459999999999999999999975 9999999984

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=96.75  E-value=0.0014  Score=75.43  Aligned_cols=34  Identities=44%  Similarity=0.636  Sum_probs=31.3

Q ss_pred             cEEEECCCchHHHHHHHHhccCC-CeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg-~sVLVLEAG~d~  198 (1381)
                      |++|||||+||+++|..|++. | .+|.++|+.+.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCcc
Confidence            899999999999999999976 8 999999999653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR02053 MerA mercuric reductase

Probab=96.74  E-value=0.0013  Score=78.64  Aligned_cols=33  Identities=30%  Similarity=0.579  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ||+||||||+||..+|.++++. |++|.++|+++
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence            7999999999999999999975 99999999853

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=96.74  E-value=0.0061  Score=70.98  Aligned_cols=51  Identities=12%  Similarity=0.107  Sum_probs=42.2

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA  429 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SP  429 (1381)
                      ++.+-.++++-+|.|..+. ++|+++|..+  +++...++| +++|+|+|++-|-
T Consensus       269 ~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~tr--n~~diP~~a-~~~VLAsGsffsk  319 (421)
T COG3075         269 EQLGGLWMPGDEVKKATCK-GGRVTEIYTR--NHADIPLRA-DFYVLASGSFFSK  319 (421)
T ss_pred             HHcCceEecCCceeeeeee-CCeEEEEEec--ccccCCCCh-hHeeeeccccccc
Confidence            3567789999999999997 7899999766  477778999 5899999988764

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.73  E-value=0.016  Score=69.40  Aligned_cols=52  Identities=35%  Similarity=0.457  Sum_probs=38.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSG  436 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSG  436 (1381)
                      ++.|++|.+|+.|++|.-|      ||.+.+  |++ ++.++ -||=|||.=.+|-.=.+||
T Consensus       220 ~~~GV~v~l~~~Vt~v~~~------~v~~~~--g~~-~I~~~-tvvWaaGv~a~~~~~~l~~  271 (405)
T COG1252         220 EKLGVEVLLGTPVTEVTPD------GVTLKD--GEE-EIPAD-TVVWAAGVRASPLLKDLSG  271 (405)
T ss_pred             HHCCCEEEcCCceEEECCC------cEEEcc--CCe-eEecC-EEEEcCCCcCChhhhhcCh
Confidence            5779999999999999544      565554  333 67784 7999999877775544444

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.72  E-value=0.0013  Score=76.36  Aligned_cols=34  Identities=29%  Similarity=0.461  Sum_probs=31.4

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +||++|||||+||+++|..|++. |.+|.++|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence            58999999999999999999975 99999999764

>KOG0685|consensus

Probab=96.72  E-value=0.0046  Score=74.60  Aligned_cols=37  Identities=38%  Similarity=0.505  Sum_probs=32.9

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      +.-++|||||.||..+|.||-|+....|+++||.++-
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI   57 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI   57 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence            3478999999999999999998877899999999753

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=96.71  E-value=0.0015  Score=77.62  Aligned_cols=35  Identities=43%  Similarity=0.696  Sum_probs=31.5

Q ss_pred             ccEEEECCCchHHHHHHHHhcc---CCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEV---SSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEd---pg~sVLVLEAG~d  197 (1381)
                      ||++|||||++|+++|..|++.   .|.+|.|+|+.+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~   38 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN   38 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence            7999999999999999999973   4899999999653

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK13748 putative mercuric reductase; Provisional

Probab=96.70  E-value=0.0014  Score=79.95  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=31.8

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      ++||+||||||+||..+|.++++. |.+|+++|++
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC
Confidence            469999999999999999999985 8999999986

>PRK07190 hypothetical protein; Provisional

Probab=96.69  E-value=0.0017  Score=78.84  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .+++|++|||||++|+++|..|++. |.+|.++|+.+.+
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~~   40 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDGP   40 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCcc
Confidence            4568999999999999999999975 9999999998743

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.66  E-value=0.0017  Score=77.84  Aligned_cols=34  Identities=29%  Similarity=0.581  Sum_probs=31.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      ++||++|||||+||..+|.++++. |++|.++|++
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~   36 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKK   36 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence            359999999999999999999975 9999999986

>PTZ00367 squalene epoxidase; Provisional

Probab=96.64  E-value=0.0017  Score=80.53  Aligned_cols=36  Identities=47%  Similarity=0.576  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +.+||+||||||.||+++|..|+++ |++|.++|+.+
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~   66 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL   66 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence            3579999999999999999999975 99999999864

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.63  E-value=0.0075  Score=69.45  Aligned_cols=35  Identities=17%  Similarity=0.440  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHHHHhc--cCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSE--dpg~sVLVLEAG~d~  198 (1381)
                      .++|||||.||..+|+|+.+  +++.+|.++|+.+..
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            37999999999999999964  357899999988653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.59  E-value=0.012  Score=73.95  Aligned_cols=37  Identities=19%  Similarity=0.292  Sum_probs=32.8

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      +..+++|||||+||..+|.+|++. |++|.+.|+++..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~  345 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEI  345 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCC
Confidence            357899999999999999999975 8999999998753

>PRK09897 hypothetical protein; Provisional

Probab=96.57  E-value=0.017  Score=71.50  Aligned_cols=35  Identities=26%  Similarity=0.337  Sum_probs=30.2

Q ss_pred             ccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      .+++|||||++|..+|.+|.++ ++.+|.|+|.++.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~   37 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE   37 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence            4799999999999999999864 4568999999754

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=96.56  E-value=0.0025  Score=74.57  Aligned_cols=33  Identities=33%  Similarity=0.572  Sum_probs=30.9

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      .+|++|||||+||+++|..|++. |.+|.|+|+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence            58999999999999999999975 9999999996

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.56  E-value=0.0021  Score=74.15  Aligned_cols=35  Identities=49%  Similarity=0.589  Sum_probs=31.4

Q ss_pred             CcccEEEECCCchHHHHHHHHhcc--CCCeEEEEecc
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAG  195 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEd--pg~sVLVLEAG  195 (1381)
                      +++|++|||||+||+++|..|++.  +|.+|.|+|+-
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            468999999999999999999864  39999999986

>KOG2311|consensus

Probab=96.53  E-value=0.0043  Score=74.66  Aligned_cols=52  Identities=31%  Similarity=0.446  Sum_probs=39.6

Q ss_pred             CCCCeEEEcCcEEEEEEec-C--CCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIIN-D--QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL  431 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd-~--g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqL  431 (1381)
                      +.+|++|+.++.++=++-| +  ..+++||...|  |.  .|+|+ .||+..|++-+.||
T Consensus       136 st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~d--gt--~v~a~-~VilTTGTFL~~~I  190 (679)
T KOG2311|consen  136 STPNLEIREGAVADLIVEDPDDGHCVVSGVVLVD--GT--VVYAE-SVILTTGTFLRGQI  190 (679)
T ss_pred             cCCcchhhhhhhhheeeccCCCCceEEEEEEEec--Cc--Eeccc-eEEEeeccceeeEE
Confidence            5679999988877766665 2  23688998876  54  67784 79999999977766

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.52  E-value=0.0026  Score=76.64  Aligned_cols=33  Identities=42%  Similarity=0.674  Sum_probs=30.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA  194 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA  194 (1381)
                      ++||+||||||+||..+|.++++. |+||+++|+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence            469999999999999999999975 899999998

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.52  E-value=0.0022  Score=74.49  Aligned_cols=34  Identities=18%  Similarity=0.350  Sum_probs=31.3

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .+|++|||||++|+++|..|+++ |++|.++|+.+
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~   34 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS   34 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence            37999999999999999999975 99999999875

>PLN02507 glutathione reductase

Probab=96.50  E-value=0.0025  Score=77.64  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=31.4

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA  194 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA  194 (1381)
                      ..+||+||||||+||..+|.|+++. |+||.++|+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence            4579999999999999999999986 999999995

>PRK06184 hypothetical protein; Provisional

Probab=96.47  E-value=0.0029  Score=76.43  Aligned_cols=36  Identities=33%  Similarity=0.475  Sum_probs=32.6

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|++|||||+||.++|..|++. |.+|.|+|+-+.
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~   37 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPE   37 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence            358999999999999999999975 999999999754

>PRK06847 hypothetical protein; Provisional

Probab=96.46  E-value=0.0031  Score=72.38  Aligned_cols=36  Identities=25%  Similarity=0.343  Sum_probs=32.2

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +..|++|||||+||+++|..|++. |.+|.|+|+.++
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~   38 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPE   38 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence            457999999999999999999975 999999998753

>PLN02546 glutathione reductase

Probab=96.46  E-value=0.0029  Score=78.32  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=31.2

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA  194 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA  194 (1381)
                      ..+||+||||||+||..+|.+++|. |+||.++|+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~  110 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL  110 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence            3469999999999999999999986 999999995

>KOG2852|consensus

Probab=96.46  E-value=0.0014  Score=74.96  Aligned_cols=63  Identities=16%  Similarity=0.321  Sum_probs=45.4

Q ss_pred             hhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        370 TPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       370 ~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ..++ +|.|+++..+. |..+. |+.+|..+|......+..+...+ ..||+|||. -|+|++..-+|
T Consensus       155 sea~-k~~~V~lv~Gk-v~ev~-dEk~r~n~v~~ae~~~ti~~~d~-~~ivvsaGP-WTskllp~~rI  217 (380)
T KOG2852|consen  155 SEAE-KRGGVKLVFGK-VKEVS-DEKHRINSVPKAEAEDTIIKADV-HKIVVSAGP-WTSKLLPFTRI  217 (380)
T ss_pred             HHHH-hhcCeEEEEee-eEEee-cccccccccchhhhcCceEEeee-eEEEEecCC-Cchhhcccccc
Confidence            3455 78999999886 44554 44678888877653344556666 469999995 68999988776

>PRK07588 hypothetical protein; Provisional

Probab=96.40  E-value=0.003  Score=73.32  Aligned_cols=32  Identities=34%  Similarity=0.348  Sum_probs=30.1

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      |++|||||+||+++|..|+++ |.+|.++|+.+
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~   33 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP   33 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence            899999999999999999975 99999999985

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.40  E-value=0.007  Score=70.67  Aligned_cols=37  Identities=30%  Similarity=0.407  Sum_probs=27.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +.||.|+||.|+++..+|..+.|.++.+++.+|+-++
T Consensus         1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            4699999999999999999999987789999997653

>KOG2853|consensus

Probab=96.39  E-value=0.022  Score=66.73  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=31.8

Q ss_pred             CcccEEEECCCchHHHHHHHHhc---cCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSE---VSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSE---dpg~sVLVLEAG~d  197 (1381)
                      .+.|++|||||-.|+..|.-|.|   +.+.+|+|+|+-.-
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt  124 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT  124 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence            46799999999999999998876   35689999999864

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.39  E-value=0.003  Score=76.57  Aligned_cols=36  Identities=39%  Similarity=0.650  Sum_probs=32.4

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ..+||+||||||+||-++|.|.++. |.||.++|+++
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~   37 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGE   37 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecC
Confidence            3579999999999999999999986 66699999995

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.38  E-value=0.0034  Score=76.34  Aligned_cols=35  Identities=20%  Similarity=0.432  Sum_probs=31.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      ++||+||||||+||.++|.|+++..|+||.++|++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            46999999999999999999997438999999974

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=96.37  E-value=0.003  Score=73.73  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=32.2

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ++|++|||||+||+++|..|++. |++|.|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCc
Confidence            57999999999999999999975 999999999873

>PRK06753 hypothetical protein; Provisional

Probab=96.37  E-value=0.0032  Score=72.31  Aligned_cols=33  Identities=30%  Similarity=0.376  Sum_probs=30.9

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      |++|||||+||+++|..|+++ |++|.++|+.++
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence            799999999999999999975 999999999975

>PRK06834 hypothetical protein; Provisional

Probab=96.36  E-value=0.0032  Score=76.41  Aligned_cols=36  Identities=22%  Similarity=0.418  Sum_probs=32.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++|+||||||++|+++|..|++. |.+|.|+|+.+.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~   37 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPN   37 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            358999999999999999999975 999999998763

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.34  E-value=0.0031  Score=76.72  Aligned_cols=33  Identities=21%  Similarity=0.426  Sum_probs=30.7

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      .||+||||||+||..+|.++++. |+||+++|++
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence            59999999999999999999975 9999999974

>KOG0029|consensus

Probab=96.28  E-value=0.0044  Score=75.95  Aligned_cols=39  Identities=31%  Similarity=0.526  Sum_probs=34.8

Q ss_pred             CCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        158 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       158 ~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ...++.++||||||.||.++|+.|.+. |.+|+|+||-+.
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdR   49 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDR   49 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCC
Confidence            355678999999999999999999976 999999999764

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.24  E-value=0.0068  Score=76.10  Aligned_cols=39  Identities=31%  Similarity=0.472  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .+++|++|||||+||+++|..|++.+|.+|.++|+-+..
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~   68 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR   68 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence            457999999999999999999997348999999987643

>PLN02576 protoporphyrinogen oxidase

Probab=96.24  E-value=0.0041  Score=74.56  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=32.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++|++|||||.||.++|.+|+++.|.+|.|+||.+.
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r   47 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDR   47 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence            4579999999999999999999743789999999864

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.24  E-value=0.0032  Score=75.99  Aligned_cols=38  Identities=32%  Similarity=0.456  Sum_probs=29.4

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      +++||+||+|.|-.-|++|+-||.+ |+||+.+|+.+..
T Consensus         2 ~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yY   39 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYY   39 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSS
T ss_pred             CccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCc
Confidence            4689999999999999999999976 9999999999754

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK07236 hypothetical protein; Provisional

Probab=96.23  E-value=0.0048  Score=71.75  Aligned_cols=36  Identities=19%  Similarity=0.166  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++.|++|||||+||+++|.-|+++ |.+|.|+|+.+
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~   39 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP   39 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence            3458999999999999999999985 99999999875

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.22  E-value=0.026  Score=73.34  Aligned_cols=58  Identities=9%  Similarity=0.259  Sum_probs=43.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.++++.++++|++|.-+++++..+|++.  +|+  ++.+ ..||+|+|.--...++..+|+
T Consensus       198 ~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~--dG~--~i~~-D~Vv~A~G~rPn~~L~~~~Gl  255 (847)
T PRK14989        198 ESMGVRVHTSKNTLEIVQEGVEARKTMRFA--DGS--ELEV-DFIVFSTGIRPQDKLATQCGL  255 (847)
T ss_pred             HHCCCEEEcCCeEEEEEecCCCceEEEEEC--CCC--EEEc-CEEEECCCcccCchHHhhcCc
Confidence            467899999999999975433455666664  465  4667 479999998877788777886

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=96.20  E-value=0.0042  Score=72.81  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=30.0

Q ss_pred             cEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      +++|||||.||.++|.+|+++ ++++|.|+||.+.
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~   36 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDR   36 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCC
Confidence            689999999999999999986 3489999999754

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=96.17  E-value=0.005  Score=72.90  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=31.5

Q ss_pred             ccEEEECCCchHHHHHHHHhcc-C--CCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEV-S--SLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEd-p--g~sVLVLEAG~d  197 (1381)
                      .|++|||||.||+++|.+|+++ +  |++|.|+||.+.
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r   40 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDR   40 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc
Confidence            6999999999999999999975 2  899999999764

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.12  E-value=0.0047  Score=77.95  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=31.4

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      ++||+||||||+||-.+|.+.+|. |.||.++|.+
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence            479999999999999999999985 9999999965

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=96.11  E-value=0.005  Score=72.19  Aligned_cols=35  Identities=20%  Similarity=0.402  Sum_probs=32.0

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ++|++|||||+||+++|..|++. |++|.++|+-+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence            47999999999999999999975 999999999863

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK14727 putative mercuric reductase; Provisional

Probab=96.10  E-value=0.0056  Score=73.89  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=32.4

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ..+||+||||||+||..+|.|+++. |.+|.++|+++
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~   49 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGAD   49 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence            3469999999999999999999975 89999999873

>PRK08163 salicylate hydroxylase; Provisional

Probab=96.03  E-value=0.0069  Score=70.14  Aligned_cols=34  Identities=29%  Similarity=0.426  Sum_probs=31.5

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +.|++|||||+||+++|..|++. |.+|.|+|+.+
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~   37 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAA   37 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCc
Confidence            47999999999999999999975 99999999975

>PLN02268 probable polyamine oxidase

Probab=96.02  E-value=0.0061  Score=71.95  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=30.9

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      |+||||||.||.++|++|.++ |++|.|+||.+..
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~   35 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRI   35 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence            789999999999999999974 8999999998753

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.02  E-value=0.0066  Score=63.13  Aligned_cols=31  Identities=39%  Similarity=0.613  Sum_probs=27.9

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      |++|||||+||..+|.++++ ++.+|.++|+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii~~~   31 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELAR-PGAKVLIIEKS   31 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHH-TTSEEEEESSS
T ss_pred             CEEEEecHHHHHHHHHHHhc-CCCeEEEEecc
Confidence            79999999999999999994 69999999554

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG3855|consensus

Probab=95.93  E-value=0.0098  Score=70.91  Aligned_cols=39  Identities=36%  Similarity=0.592  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccC---CCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVS---SLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdp---g~sVLVLEAG~d  197 (1381)
                      +.+.||++|||||++|.++|+.+..+|   .+||+++|+|..
T Consensus        33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            345799999999999999999998775   579999999964

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=95.79  E-value=0.12  Score=63.26  Aligned_cols=65  Identities=18%  Similarity=0.367  Sum_probs=47.9

Q ss_pred             cchhhhcchhhhc--CCCCeEEEcCcEEEEEEec---CCCeEEEEEEEecCCeE--EEEecCcEEEEcCCchh
Q psy11618        362 FSAADAYLTPIAG--KRTNLYVLKRSKVTKVIIN---DQNVATGVEYVNSKGET--VRVTANKEVILTAGAIA  427 (1381)
Q Consensus       362 sSAa~AYL~Pa~~--~R~NLtILTnA~VtRIlfd---~g~RAtGVE~vd~~Gr~--~tV~ArKEVILSAGAI~  427 (1381)
                      .+-.++...|..+  +.++++...|++|+.|.++   ++++|++.++.+ +|++  ..+..+.-|++.-|++-
T Consensus       203 YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~-~g~~~~i~l~~~DlV~vT~GS~t  274 (500)
T PF06100_consen  203 YNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ-DGKEETIDLGPDDLVFVTNGSMT  274 (500)
T ss_pred             cccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc-CCCeeEEEeCCCCEEEEECCccc
Confidence            3344444556431  5679999999999999997   345788999886 6654  45667788999999764

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.65  E-value=0.052  Score=69.95  Aligned_cols=56  Identities=20%  Similarity=0.391  Sum_probs=42.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.++++.++++|++|.-+  ++..+|++.|  |+  ++.++ -||+|+|.--...+...+|+
T Consensus       193 ~~~GV~v~~~~~v~~i~~~--~~~~~v~~~d--G~--~i~~D-~Vi~a~G~~Pn~~la~~~gl  248 (785)
T TIGR02374       193 EQKGLTFLLEKDTVEIVGA--TKADRIRFKD--GS--SLEAD-LIVMAAGIRPNDELAVSAGI  248 (785)
T ss_pred             HHcCCEEEeCCceEEEEcC--CceEEEEECC--CC--EEEcC-EEEECCCCCcCcHHHHhcCC
Confidence            4679999999999998643  4677887754  65  46664 79999997766677766776

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=95.63  E-value=0.18  Score=59.76  Aligned_cols=36  Identities=28%  Similarity=0.255  Sum_probs=31.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ..-++-|||+|.+|..+|.-||.  .++|.+-||+..-
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rl   42 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRL   42 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhc--ccceEEEeccccc
Confidence            34578999999999999999996  5899999999753

>PRK05868 hypothetical protein; Validated

Probab=95.58  E-value=0.012  Score=68.72  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=30.9

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      -|++|||||+||+++|..|+++ |++|.|+|+.++
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~   35 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG   35 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence            3899999999999999999975 999999999754

>PRK07846 mycothione reductase; Reviewed

Probab=95.47  E-value=0.012  Score=70.66  Aligned_cols=32  Identities=25%  Similarity=0.679  Sum_probs=27.7

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +||+||||||+||-.+|.|.   .|+||.++|++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~---~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF---ADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH---CCCeEEEEeCCC
Confidence            49999999999999888773   389999999864

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=95.43  E-value=0.092  Score=61.21  Aligned_cols=47  Identities=21%  Similarity=0.226  Sum_probs=32.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ  430 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPq  430 (1381)
                      .+ +.++.+++.|++|..+ +++ .+|+  ..+|+  +++| +.||+|+|+- |++
T Consensus       146 ~~-G~~i~~~~~V~~i~~~-~~~-~~v~--t~~g~--~~~a-~~vV~a~G~~-~~~  192 (381)
T TIGR03197       146 GI-RLTLHFNTEITSLERD-GEG-WQLL--DANGE--VIAA-SVVVLANGAQ-AGQ  192 (381)
T ss_pred             CC-CcEEEeCCEEEEEEEc-CCe-EEEE--eCCCC--EEEc-CEEEEcCCcc-ccc
Confidence            45 8999999999999876 443 3343  32454  3567 4799999954 443

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR03452 mycothione_red mycothione reductase

Probab=95.42  E-value=0.013  Score=70.27  Aligned_cols=31  Identities=23%  Similarity=0.626  Sum_probs=27.0

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      +||+||||||+||..+|.|.   .|+||.++|++
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~---~g~~V~lie~~   32 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF---ADKRIAIVEKG   32 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH---CCCeEEEEeCC
Confidence            59999999999998887664   39999999985

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=95.37  E-value=0.013  Score=69.94  Aligned_cols=34  Identities=18%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHHHHhcc-----CCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEV-----SSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEd-----pg~sVLVLEAG~d  197 (1381)
                      ++||||||.||.++|++|+++     ++.+|.|+||.+.
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r   41 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY   41 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC
Confidence            689999999999999999975     2479999999764

>PLN02676 polyamine oxidase

Probab=95.36  E-value=0.016  Score=70.74  Aligned_cols=38  Identities=34%  Similarity=0.492  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCC-eEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~-sVLVLEAG~d~  198 (1381)
                      ...+|+||||||.+|..+|.+|+++ |. +|+|+||++..
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~   62 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRI   62 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCC
Confidence            3468999999999999999999986 66 69999998653

>PLN02568 polyamine oxidase

Probab=95.35  E-value=0.018  Score=71.30  Aligned_cols=38  Identities=32%  Similarity=0.457  Sum_probs=32.7

Q ss_pred             CcccEEEECCCchHHHHHHHHhccC----CCeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVS----SLKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdp----g~sVLVLEAG~d~  198 (1381)
                      +..|+||||||.||.++|++|++..    +.+|.|+||+...
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~   45 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI   45 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence            3479999999999999999999752    4899999998754

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=95.30  E-value=0.016  Score=69.98  Aligned_cols=34  Identities=26%  Similarity=0.239  Sum_probs=31.2

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      -|++|||||.|||.+|..||+. |.+|.++|+.+.
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~   36 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPV   36 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCc
Confidence            4999999999999999999975 999999998864

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=95.27  E-value=0.022  Score=74.96  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+.+|++|||||+||..+|.+|++. |++|.|+|+++.
T Consensus       535 ~~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~  571 (1012)
T TIGR03315       535 SSAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEK  571 (1012)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccc
Confidence            3568999999999999999999975 899999998764

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG2844|consensus

Probab=95.16  E-value=0.077  Score=66.50  Aligned_cols=46  Identities=24%  Similarity=0.312  Sum_probs=33.4

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      ++-+..|..||-|++|..++ ++..|||-..  |   .+++. .||=|||.=.
T Consensus       198 ~~~GA~viE~cpV~~i~~~~-~~~~gVeT~~--G---~iet~-~~VNaaGvWA  243 (856)
T KOG2844|consen  198 SALGALVIENCPVTGLHVET-DKFGGVETPH--G---SIETE-CVVNAAGVWA  243 (856)
T ss_pred             HhcCcEEEecCCcceEEeec-CCccceeccC--c---ceecc-eEEechhHHH
Confidence            57789999999999999973 3344888754  4   35665 4788888433

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=95.07  E-value=0.02  Score=68.70  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++||||||+||..+|.++++. |++|.++|+++
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCc
Confidence            689999999999999999974 99999999974

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=95.06  E-value=0.11  Score=64.71  Aligned_cols=52  Identities=19%  Similarity=0.272  Sum_probs=44.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .+.|+++++++.|++++.+ ++|++||...+. +|+..+++| |-||+|+|.++.
T Consensus       130 ~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~  182 (565)
T TIGR01816       130 LKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR  182 (565)
T ss_pred             HhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence            4678999999999999987 679999998653 688888999 589999999875

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>KOG2960|consensus

Probab=95.02  E-value=0.005  Score=68.01  Aligned_cols=36  Identities=36%  Similarity=0.448  Sum_probs=32.1

Q ss_pred             CCcccEEEECCCchHHHHHHHHhc-cCCCeEEEEecc
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAG  195 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSE-dpg~sVLVLEAG  195 (1381)
                      -.+-|+||||+|+||..+|...++ +|+.+|.+||+.
T Consensus        74 yAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S  110 (328)
T KOG2960|consen   74 YAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS  110 (328)
T ss_pred             hhccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence            346799999999999999999994 599999999986

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=94.89  E-value=0.029  Score=71.08  Aligned_cols=37  Identities=19%  Similarity=0.268  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ..+..|++|||||.||.++|..|++. |.+|.|+|+.+
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~  114 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL  114 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence            45679999999999999999999985 99999999865

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=94.86  E-value=0.062  Score=60.35  Aligned_cols=49  Identities=24%  Similarity=0.415  Sum_probs=36.9

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL  431 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqL  431 (1381)
                      .+.|.++..+++|+++..+ ++++++|+..  +|   +++|+ .||+|+|+ .|+++
T Consensus       148 ~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~--~g---~~~a~-~vV~a~G~-~~~~l  196 (337)
T TIGR02352       148 EKLGVEIIEHTEVQHIEIR-GEKVTAIVTP--SG---DVQAD-QVVLAAGA-WAGEL  196 (337)
T ss_pred             HHcCCEEEccceEEEEEee-CCEEEEEEcC--CC---EEECC-EEEEcCCh-hhhhc
Confidence            4568999999999999876 6678888642  34   57785 69999996 44443

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=94.85  E-value=0.03  Score=67.62  Aligned_cols=39  Identities=23%  Similarity=0.377  Sum_probs=33.7

Q ss_pred             CCCCcccEEEECCCchHHHHHHHHhccCCCe-EEEEeccCC
Q psy11618        158 KSGDCFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGGD  197 (1381)
Q Consensus       158 ~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~s-VLVLEAG~d  197 (1381)
                      ...+.+|++|||||.||..+|.+|.+. +.+ +.++|+.++
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~   43 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDD   43 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCC
Confidence            345679999999999999999999976 555 999999974

>KOG0405|consensus

Probab=94.81  E-value=0.036  Score=65.20  Aligned_cols=37  Identities=27%  Similarity=0.349  Sum_probs=32.3

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ..++|||.|||||++|...|+|=++ -|.||.++|++.
T Consensus        17 ~~k~fDylvIGgGSGGvasARrAa~-~GAkv~l~E~~f   53 (478)
T KOG0405|consen   17 DVKDFDYLVIGGGSGGVASARRAAS-HGAKVALCELPF   53 (478)
T ss_pred             cccccceEEEcCCcchhHHhHHHHh-cCceEEEEecCC
Confidence            4468999999999999998888776 499999999984

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=94.75  E-value=0.032  Score=65.67  Aligned_cols=34  Identities=38%  Similarity=0.492  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|||||.||+++|..|+++++.+|.|+|+.++
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            5799999999999999999864469999999753

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06475 salicylate hydroxylase; Provisional

Probab=94.74  E-value=0.031  Score=65.54  Aligned_cols=32  Identities=31%  Similarity=0.368  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +++|||||+||+++|.-|++ +|++|.++|+.+
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~   35 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAA-RGWAVTIIEKAQ   35 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence            78999999999999999997 499999999865

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=94.73  E-value=0.034  Score=67.18  Aligned_cols=37  Identities=35%  Similarity=0.449  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++.|+||||+|-||+++|++|+++ |++|.++||-+.
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r   41 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDR   41 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCC
Confidence            4568999999999999999999976 999999999764

>PRK12831 putative oxidoreductase; Provisional

Probab=94.68  E-value=0.039  Score=66.83  Aligned_cols=37  Identities=22%  Similarity=0.340  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+..|++|||||+||..+|.++++. |++|.++|+.+.
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~  174 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHE  174 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence            3457999999999999999999975 999999998653

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=94.53  E-value=0.033  Score=67.46  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=30.4

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      |++|||||.|||.+|..|++. |.+|.++|..++
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence            789999999999999999975 999999998764

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=94.14  E-value=0.056  Score=64.95  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+..|++|||||+||..+|.++++. |++|.++|+++.
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~  174 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDK  174 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCC
Confidence            4457999999999999999999975 899999999864

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=93.83  E-value=0.058  Score=65.16  Aligned_cols=32  Identities=28%  Similarity=0.452  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      |+||||||+||..+|.++++. |++|.++|+++
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence            899999999999999999975 89999999864

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=93.67  E-value=0.071  Score=68.26  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=31.7

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +..|++|||||+||..+|..|++. |++|.++|+.+
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~  464 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALH  464 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence            457999999999999999999975 99999999854

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.57  E-value=0.1  Score=48.14  Aligned_cols=34  Identities=29%  Similarity=0.460  Sum_probs=30.6

Q ss_pred             EEEECCCchHHHHHHHHhccCCCeEEEEeccCCCC
Q psy11618        165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  199 (1381)
Q Consensus       165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~  199 (1381)
                      ++|||||..|+-.|..+++. +++|.++|+++...
T Consensus         2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~   35 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhh
Confidence            58999999999999999975 89999999998643

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02852 ferredoxin-NADP+ reductase

Probab=93.50  E-value=0.098  Score=64.37  Aligned_cols=38  Identities=24%  Similarity=0.342  Sum_probs=33.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhc-cCCCeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSE-dpg~sVLVLEAG~d~  198 (1381)
                      +..++.|||||+||..+|.+|++ +++++|.++|+-+.+
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            34689999999999999999985 368999999999754

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=93.30  E-value=0.077  Score=68.22  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=30.7

Q ss_pred             cEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      +++|||||+||+++|..|++. +|++|.|+|+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            689999999999999999975 5899999998764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=93.09  E-value=0.11  Score=65.68  Aligned_cols=36  Identities=25%  Similarity=0.292  Sum_probs=32.4

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +..|++|||||+||..+|.++++. |++|.++|+.+.
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~  227 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQ  227 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            457999999999999999999975 899999998865

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=93.02  E-value=0.098  Score=69.03  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=32.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +.-|++|||||+||..+|..|++. |++|.++|+.+.
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~  573 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREEN  573 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccc
Confidence            456999999999999999999976 899999998764

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=92.93  E-value=0.13  Score=59.80  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=32.0

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ..|++|||||.||+.+|.++++. +++|.++|+++..
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~   53 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEP   53 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            35899999999999999999975 8999999998653

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=92.75  E-value=0.11  Score=68.28  Aligned_cols=36  Identities=28%  Similarity=0.234  Sum_probs=32.2

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +..+++|||||+||.++|..|++. |++|.|+|+.+.
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~  340 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHD  340 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCC
Confidence            356899999999999999999975 999999999754

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=92.62  E-value=0.12  Score=66.88  Aligned_cols=36  Identities=31%  Similarity=0.526  Sum_probs=32.4

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +..|++|||||.||..+|.+|++. |++|.|+|+...
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r  272 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRAR  272 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecccc
Confidence            468999999999999999999974 999999999754

>PLN03000 amine oxidase

Probab=92.60  E-value=0.089  Score=68.43  Aligned_cols=37  Identities=27%  Similarity=0.395  Sum_probs=33.0

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      +..|++|||||.+|+.+|.+|++. |++|.|+|+.++.
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~ri  219 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRP  219 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcC
Confidence            468999999999999999999975 8999999998653

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=92.49  E-value=0.11  Score=63.61  Aligned_cols=32  Identities=34%  Similarity=0.432  Sum_probs=30.0

Q ss_pred             EEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ++|+|||-||..+|..|+|+ |.+|.+.|||+.
T Consensus         3 Vai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~   34 (485)
T COG3349           3 VAIAGAGLAGLAAAYELADA-GYDVTLYEARDR   34 (485)
T ss_pred             EEEEcccHHHHHHHHHHHhC-CCceEEEeccCc
Confidence            68999999999999999986 999999999975

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.24  E-value=1.8  Score=52.41  Aligned_cols=40  Identities=33%  Similarity=0.385  Sum_probs=36.0

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .++.+|.|.||-|++-..+|+-++|..+.+++.+|+-|+.
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            3467999999999999999999999878999999999863

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=92.20  E-value=0.2  Score=61.27  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=32.2

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +..+++|||||+||..+|..|++. |.+|.++|+++.
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~  177 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDR  177 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence            346999999999999999999975 899999999864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG2614|consensus

Probab=91.86  E-value=0.19  Score=60.46  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=30.5

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +-++||||||-+|++.|.-+++. |++|.|+|+-.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e   35 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRK-GIDVVVLESRE   35 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHc-CCeEEEEeecc
Confidence            45899999999999999999975 99999999943

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=91.76  E-value=1.5  Score=50.36  Aligned_cols=60  Identities=25%  Similarity=0.186  Sum_probs=37.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      +..+.++.++..+.+|.-+ ++++++.+....+++  ++++ +-|+++.|.--...+....|.|
T Consensus       189 ~~~gi~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~--~~~~-d~~~~~~g~~p~~~l~~~~~~~  248 (415)
T COG0446         189 EKYGVELLLGTKVVGVEGK-GNTLVVERVVGIDGE--EIKA-DLVIIGPGERPNVVLANDALPG  248 (415)
T ss_pred             HHCCcEEEeCCceEEEEcc-cCcceeeEEEEeCCc--EEEe-eEEEEeecccccHHHHhhCccc
Confidence            3456999999999999876 444444321111233  4555 3678877766666666666534

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=91.69  E-value=0.17  Score=60.69  Aligned_cols=35  Identities=29%  Similarity=0.533  Sum_probs=31.0

Q ss_pred             cEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~  198 (1381)
                      .++|||||.||..+|+++.+. ++.+|.++|++++.
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~   38 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   38 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            689999999999999999864 67899999999753

>KOG4716|consensus

Probab=91.68  E-value=0.21  Score=58.92  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=32.7

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ....||-||||||++|...|.|=|.. |++|.+++.=..
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV~P   53 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFVKP   53 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeeccc
Confidence            44579999999999999999998864 999999998643

>PLN02976 amine oxidase

Probab=91.63  E-value=0.17  Score=68.45  Aligned_cols=36  Identities=36%  Similarity=0.472  Sum_probs=32.0

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ..+|++|||||+||+.+|.+|++. |.+|.++|+++.
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~  727 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSR  727 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccC
Confidence            458999999999999999999975 899999999643

>PTZ00188 adrenodoxin reductase; Provisional

Probab=91.22  E-value=0.21  Score=61.60  Aligned_cols=37  Identities=22%  Similarity=0.254  Sum_probs=32.0

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ..-+.|||||+||+.+|.+++...+++|-+.|+-+.+
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p   75 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP   75 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            3468999999999999999875568999999999754

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=91.19  E-value=0.29  Score=50.83  Aligned_cols=31  Identities=19%  Similarity=0.437  Sum_probs=26.4

Q ss_pred             EEECCCchHHHHHHHHhccC----CCeEEEEeccC
Q psy11618        166 IIVGASAAGCVLANRLSEVS----SLKVLLIEAGG  196 (1381)
Q Consensus       166 IIVGGGTAG~VLAsRLSEdp----g~sVLVLEAG~  196 (1381)
                      .|||||++|..+|.+|.+..    ..+|.+.|..+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~   35 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP   35 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            48999999999999999763    56899999843

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=91.03  E-value=0.34  Score=58.97  Aligned_cols=36  Identities=19%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +..|++|||||+||..+|..+++. |.+|.++|+.+.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~  175 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPE  175 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence            457999999999999999999975 899999999864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK13984 putative oxidoreductase; Provisional

Probab=90.24  E-value=0.33  Score=60.55  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .+..+++|||||+||..+|..|++. |++|.++|+.+..
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~  318 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKP  318 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            3467999999999999999999975 8999999998643

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=89.38  E-value=1.9  Score=45.38  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=27.0

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      -.++|||||.+|.-+|.+|+++ +++|-++=+.+
T Consensus       168 k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~  200 (203)
T PF13738_consen  168 KRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP  200 (203)
T ss_dssp             SEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred             CcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence            5799999999999999999987 68999887765

...

>KOG2403|consensus

Probab=89.21  E-value=0.39  Score=59.57  Aligned_cols=33  Identities=33%  Similarity=0.509  Sum_probs=27.6

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEe
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIE  193 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLE  193 (1381)
                      ..+||.+|||+|.||.-.|-.++|. +.+|.++-
T Consensus        53 ~~~~da~vvgaggAGlr~~~~lae~-g~~~a~it   85 (642)
T KOG2403|consen   53 DHTYDAVVVGAGGAGLRAARGLAEL-GEKTAVIT   85 (642)
T ss_pred             eeeceeEEEeccchhhhhhhhhhhc-CceEEEEe
Confidence            3469999999999999999999986 66666653

>KOG1335|consensus

Probab=87.98  E-value=0.73  Score=55.38  Aligned_cols=65  Identities=18%  Similarity=0.388  Sum_probs=44.7

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCc
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV  450 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpV  450 (1381)
                      +.++++-.++++|++..-++++ -+-|++.+. +|++.+.+++ -..+|.|-  .|   ..+|.|    +++.||..
T Consensus       263 ~kQgikF~l~tkv~~a~~~~dg-~v~i~ve~ak~~k~~tle~D-vlLVsiGR--rP---~t~GLg----le~iGi~~  328 (506)
T KOG1335|consen  263 QKQGIKFKLGTKVTSATRNGDG-PVEIEVENAKTGKKETLECD-VLLVSIGR--RP---FTEGLG----LEKIGIEL  328 (506)
T ss_pred             HhcCceeEeccEEEEeeccCCC-ceEEEEEecCCCceeEEEee-EEEEEccC--cc---cccCCC----hhhccccc
Confidence            4578999999999999887333 456666665 6777777774 67788882  23   345655    55666654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=87.81  E-value=0.53  Score=58.44  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=30.9

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .-+++|||||+||..+|..+++. |.+|.++|+.+.
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~  171 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPK  171 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence            45899999999999999999975 889999998754

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=87.12  E-value=0.43  Score=57.68  Aligned_cols=96  Identities=22%  Similarity=0.287  Sum_probs=52.6

Q ss_pred             CCCccchhhhheecCCCCeEEEEEEeeeceeecCCCCCCChhhhhhhhccccccCCCCCCcccCCCCcccEEEECCCchH
Q psy11618         95 GPNFEYDQLLFSYVSPKDRVIYYNVLKTKYEKCPDFWPYPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAG  174 (1381)
Q Consensus        95 g~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~wp~p~l~~~~~~~~~~~~~p~~~~~~~~~~~~YDYIIVGGGTAG  174 (1381)
                      +-+.+||.+.++   =|++..|+++=- ..+-+...|....-.+.|...-..+.-.+.   ...+.+.-+++|||||+.|
T Consensus        95 ~~~i~YD~LVva---lGs~~~~fgi~G-~~E~a~~lks~edA~~ir~~l~~~fe~a~~---~~~~~~~lti~IvGgG~TG  167 (405)
T COG1252          95 LGEISYDYLVVA---LGSETNYFGIPG-AAEYAFGLKTLEDALRLRRHLLEAFEKASQ---EEDDRALLTIVIVGGGPTG  167 (405)
T ss_pred             CccccccEEEEe---cCCcCCcCCCCC-HHHhCCCCCCHHHHHHHHHHHHHHHHHhhc---cccccceeEEEEECCChhH
Confidence            455788887654   366666644311 123344444444322222211111110100   0001234689999999999


Q ss_pred             HHHHHHHhccC------------CCeEEEEeccCC
Q psy11618        175 CVLANRLSEVS------------SLKVLLIEAGGD  197 (1381)
Q Consensus       175 ~VLAsRLSEdp------------g~sVLVLEAG~d  197 (1381)
                      -=+|.+|+|..            ..+|.++|||+.
T Consensus       168 VElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~  202 (405)
T COG1252         168 VELAGELAERLHRLLKKFRVDPSELRVILVEAGPR  202 (405)
T ss_pred             HHHHHHHHHHHHHHhhhhcCCccccEEEEEccCch
Confidence            99998888731            139999999985

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=86.89  E-value=0.66  Score=57.02  Aligned_cols=35  Identities=26%  Similarity=0.480  Sum_probs=31.6

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +=++.|||||.||.++|..||+. |.+|.++|.-|.
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKeps  158 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPS  158 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCc
Confidence            34789999999999999999976 999999999874

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=86.80  E-value=0.66  Score=51.60  Aligned_cols=34  Identities=38%  Similarity=0.560  Sum_probs=30.5

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      +++|||+|.-|..+|.+|+++ |++|.++|.-++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~~   35 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEER   35 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHHH
Confidence            589999999999999999986 8999999987643

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=86.54  E-value=2.1  Score=53.44  Aligned_cols=135  Identities=29%  Similarity=0.459  Sum_probs=68.0

Q ss_pred             cCCCCCcch--hhHHHHHHHHHHHhhCCCCcccceeecccCCCCcceeeeccccccccCCCc-----ccchhhccccCCC
Q psy11618         24 PFGPYLPEY--NELYCKYIKYIHEKFGPNFEYDQLLFSYVSPKDRVTYYNVLKTKYEKCPDF-----WPYIKYIHEKFGP   96 (1381)
Q Consensus        24 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~   96 (1381)
                      |+.+-.|+|  ++-+++|++-.-|+||-.   +..+|            |+.=++-+|++|+     |.+.   +++=|.
T Consensus        72 p~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~---~~I~f------------nt~V~~v~~~~d~~~~~~W~V~---~~~~g~  133 (531)
T PF00743_consen   72 PFPEDYPDFPSHSEVLEYLESYAEHFGLR---KHIRF------------NTEVVSVERDPDFSATGKWEVT---TENDGK  133 (531)
T ss_dssp             -HCCCCSSSEBHHHHHHHHHHHHHHTTGG---GGEET------------SEEEEEEEEETTTT-ETEEEEE---ETTTTE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhhhCCc---ceEEE------------ccEEeEeeeccccCCCceEEEE---eecCCe
Confidence            555555665  678899999888888753   12222            2222233445554     4432   222221


Q ss_pred             CccchhhhheecCCCCeEEEEEEeeeceeecCCCCC---CChhhhhhhhccccccCCCCCCcccCCCCcccEEEECCCch
Q psy11618         97 NFEYDQLLFSYVSPKDRVIYYNVLKTKYEKCPDFWP---YPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAA  173 (1381)
Q Consensus        97 ~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~wp---~p~l~~~~~~~~~~~~~p~~~~~~~~~~~~YDYIIVGGGTA  173 (1381)
                      + +             .-+|-.|+=.+.+-..-.||   +|-+++-+....++.+|... ...  .+  =.++|||+|.+
T Consensus       134 ~-~-------------~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~-~~f--~g--KrVlVVG~g~S  194 (531)
T PF00743_consen  134 E-E-------------TEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDP-EPF--KG--KRVLVVGGGNS  194 (531)
T ss_dssp             E-E-------------EEEECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TG-GGG--TT--SEEEEESSSHH
T ss_pred             E-E-------------EEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcCh-hhc--CC--CEEEEEeCCHh
Confidence            1 0             11222233333222222233   45444434444566666432 111  12  27999999999


Q ss_pred             HHHHHHHHhccCCCeEEEEeccC
Q psy11618        174 GCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       174 G~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      |+=+|.++|+. ..+|.+.=+.+
T Consensus       195 g~DIa~el~~~-a~~v~~s~R~~  216 (531)
T PF00743_consen  195 GADIAVELSRV-AKKVYLSTRRG  216 (531)
T ss_dssp             HHHHHHHHTTT-SCCEEEECC--
T ss_pred             HHHHHHHHHHh-cCCeEEEEecc
Confidence            99999999986 55676655544

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG1276|consensus

Probab=84.64  E-value=1.1  Score=54.60  Aligned_cols=37  Identities=22%  Similarity=0.368  Sum_probs=32.8

Q ss_pred             cccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  198 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~  198 (1381)
                      .-|+.|||||.+|..+|..||+. |+.+|.+-||+++-
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv   48 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV   48 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence            35899999999999999999976 77889999999864

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=83.83  E-value=1  Score=45.69  Aligned_cols=31  Identities=35%  Similarity=0.589  Sum_probs=28.3

Q ss_pred             EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +.|+|+|+.|+..|++|++ ++.+|.++-+++
T Consensus         1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHH-CCCceEEEEccc
Confidence            4799999999999999998 599999998886

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=82.44  E-value=1.4  Score=52.83  Aligned_cols=36  Identities=28%  Similarity=0.383  Sum_probs=33.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +.||+||+|.|-.-|+++++||-+ |++|+.|++-+.
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~   40 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDY   40 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCc
Confidence            379999999999999999999976 999999999864

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=82.33  E-value=1.4  Score=50.51  Aligned_cols=36  Identities=33%  Similarity=0.374  Sum_probs=32.7

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .-+.+|||||.+|+-+|..+++. |++|.++|+.+..
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~  171 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRL  171 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHc-CCeEEEEEccccc
Confidence            36899999999999999999976 8999999999864

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=82.17  E-value=1.9  Score=53.11  Aligned_cols=33  Identities=21%  Similarity=0.398  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|||||..|+-+|..+++. +++|.++|+++.
T Consensus       354 ~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~~  386 (515)
T TIGR03140       354 DVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFADE  386 (515)
T ss_pred             EEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCCc
Confidence            799999999999999999965 789999998864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=81.31  E-value=5.3  Score=44.22  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=30.4

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      -+++|||||.+|.-+|..+++. +++|.++++++.
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~~~  175 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRI-AKKVTLVHRRDK  175 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhh-cCEEEEEEeCcc
Confidence            3789999999999999999975 889999999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>KOG1439|consensus

Probab=80.41  E-value=1.1  Score=54.10  Aligned_cols=37  Identities=30%  Similarity=0.537  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++||+||+|.|-.=|+++.+||.+ |++|+.+++-+.
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~y   38 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDY   38 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCC
Confidence            3569999999999999999999976 899999999864

>KOG2755|consensus

Probab=80.37  E-value=1.3  Score=51.28  Aligned_cols=32  Identities=38%  Similarity=0.614  Sum_probs=28.9

Q ss_pred             EEEECCCchHHHHHHHHhcc-CCCeEEEEeccC
Q psy11618        165 IIIVGASAAGCVLANRLSEV-SSLKVLLIEAGG  196 (1381)
Q Consensus       165 YIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~  196 (1381)
                      |||||||.||-..|..|+.- |+.+|+++-|.+
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass   34 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS   34 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence            89999999999999999964 788999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1381
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		6e-26
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		5e-24
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		4e-23
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		5e-08
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		3e-20
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		7e-20
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		2e-17
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		8e-11
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		3e-17
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		8e-11
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		4e-17
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		8e-11
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		3e-11
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		3e-11
3red_A	521	3.0 A Structure Of The Prunus Mume Hydroxynitrile L		6e-11
1naa_A	541	Cellobiose Dehydrogenase Flavoprotein Fragment In C		1e-04
1kdg_A	546	Crystal Structure Of The Flavin Domain Of Cellobios		2e-04

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score =  117 bits (292), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 162/639 (25%), Positives = 251/639 (39%), Gaps = 127/639 (19%)
Query: 160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGM---SSVLSL--S 214
           G  FD +IVG   AG  +A RL+E  ++ VL++EAG   P    IP +   SS + L  S
Sbjct: 4   GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNP--EDIPEITTPSSAMDLRNS 61
Query: 215 EFDHAY---LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLG 271
           ++D AY   +     +  +   N R     GK LGGSS++    +  G    ++ + + G
Sbjct: 62  KYDWAYKTTMVRRDDYERIEKPNTR-----GKTLGGSSSLNYFTWVPGHKATFDQWEEFG 116
Query: 272 YNGWGYDETLKYFVKSEDYRS--VIYNESKAVHGTQGYLPVGLFK-NKENNIIREIFETS 328
              W +D  + Y  KS  Y     +Y+      G  G +P+   +   E    RE    +
Sbjct: 117 GKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKA 176
Query: 329 AQELGYPCPKDMNDRYVDVGFAELPGMTRYG---LRFSAADAYLTPIAGKRTNLYVLKRS 385
            + +G P  +++ D        E+ G+T       R   + ++L      + N+ ++   
Sbjct: 177 WKSMGQPLIENIYD-------GEMDGLTHCCDTIYRGQRSGSFL--FVKNKPNITIVPEV 227
Query: 386 KVTKVIINDQN-VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLD 444
              ++IIN+ +    GV  V + G  +   A++EVIL+ G     +LL+LSGIGP   L 
Sbjct: 228 HSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELS 287
Query: 445 EVKIPVKQDLR-VGEN----------LKLNAQF-TGPVMAFSAPLKRTVYSQEMVFKYLV 492
              I    D R VG+N          L++   F    V+    P +  V S      Y  
Sbjct: 288 RHGINTIVDSRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSA-----YNK 342
Query: 493 NRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQ 552
           NR GP+ +          L+ V  P     R+ + L+ +A++                  
Sbjct: 343 NRSGPVGS--------GLLELVGFP-----RIDKYLEKDAEY------------------ 371
Query: 553 EMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYD 612
                    R    +N G        D      +P  E+  +          C    A+ 
Sbjct: 372 ---------RKAKAANGGK-------DPFSPLGQPHFELDFV----------CMFGTAFQ 405
Query: 613 FNDEVQTAYVNLNKRTDMGVISMSLVNPKS-CGKVTLKSADPLAPPCIDTGILSEPEDLA 671
           +       +    K  D   + + LV P S  G+VTL SADP   P I+    +   D+ 
Sbjct: 406 W-------HFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDII 458
Query: 672 TLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWR----STHSWTCYIRHLTTTTS 727
            +  G  +   L       L  G      +E  S+YPW     S       +     T  
Sbjct: 459 AMREGIRFSYDL-------LFKGEGFKDLVE--SEYPWEMPLDSDKEMHRAVLDRCQTAF 509
Query: 728 NPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLP 766
           +P GT  +    D   VV P LKV GIK LRVAD SV+P
Sbjct: 510 HPTGTARLSKNID-QGVVDPKLKVHGIKKLRVADASVIP 547

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score =  110 bits (275), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 159/338 (47%), Gaps = 34/338 (10%)
Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRI--PGMSSVLSLSEFDHAYL 221
           DI+IVG  +AG +LA RLSE    +VLLIEA G+ P    I  P     L    +D  Y 
Sbjct: 19  DIVIVGGGSAGSLLAARLSEDPDSRVLLIEA-GEEPTDPDIWNPAAWPALQGRSYDWDYR 77
Query: 222 AEP-SQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDE 279
            E  +  AG     AR     G+ +GGSS +  + Y RG   D++ +    G   WG+DE
Sbjct: 78  TEAQAGTAGRAHHWAR-----GRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDE 132
Query: 280 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKD 339
            L  F   ED+               G LP+ L  ++ + + R   E  A  LG P  + 
Sbjct: 133 LLPVFQAIEDHPLGGDGIHG----KGGPLPIHLPADEVSPLARAFIEAGAS-LGLPRLEG 187
Query: 340 MNDRYVDVGFAELPGMT------RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN 393
            N         E+ G+T      R G R +AADA+LT     R NL +L  S+V ++ + 
Sbjct: 188 HNS-------GEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE 240
Query: 394 DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
              V + +E V  +G +  V A+ +++L AGA+ +  LL+ SGIGP   LD   +    D
Sbjct: 241 GNQVRS-LEVVGRQG-SAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLID 297
Query: 454 L-RVGENLKLNAQFTGPVMAFSAPL--KRTVYSQEMVF 488
           +  +G NL+ +    G + A   P+   R  +S+ M +
Sbjct: 298 MPDIGRNLQDHLLGAGNLYAARKPVPPSRLQHSESMAY 335

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 155/317 (48%), Gaps = 26/317 (8%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG--GDTPIHSRIPGMS-SVLSLSEFDHA 219
           FD ++VGA  AG V+A RL+E   + VL++EAG   +  + +  P ++  ++  S FD  
Sbjct: 3   FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62
Query: 220 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYD 278
           Y    +  A  G     I    G+ LGGSS+V  ++  RG++ D++ +A + G  GW +D
Sbjct: 63  Y----TTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWD 118
Query: 279 ETLKYFVKSE------DYRSVIYNESKAVHGTQGYLPVGL--FKNKENNIIREIFETSAQ 330
              ++  K+E      D  +       AVHGT G + + L  F    ++ +    +  ++
Sbjct: 119 NIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSE 178
Query: 331 ELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 390
           E  +    DM   +  +G +        G R S++ AYL P A  R NL VL  ++VTK+
Sbjct: 179 EFFF--NPDMGTGH-PLGISWSIASVGNGQRSSSSTAYLRP-AQSRPNLSVLINAQVTKL 234
Query: 391 I----INDQNVATGVEYVNSKGE-TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 445
           +     N       VEY   +G  T  V A KEV+L+AG++    LL LSGIG +  L  
Sbjct: 235 VNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSS 294
Query: 446 VKI-PVKQDLRVGENLK 461
           V I  +  +  VG NL 
Sbjct: 295 VGIDTIVNNPSVGRNLS 311

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 627 RTDMGV---ISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRL 683
           R D G    ++ +L++P + G + L +++P   P I+   LS   D+ T+I+      R 
Sbjct: 403 RPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRF 462
Query: 684 EQTEA-----IRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNA 738
              +A     IR     L     +A  +           YIR    T  +PVGT  M   
Sbjct: 463 LSGQAWADFVIRPFDPRLRDPTDDAAIE----------SYIRDNANTIFHPVGTASMSPR 512
Query: 739 DDPNAVVTPDLKVKGIKGLRVADISVLPNA 768
                VV PDLKVKG+ GLR+ D S+LP A
Sbjct: 513 GASWGVVDPDLKVKGVDGLRIVDGSILPFA 542

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 153/346 (44%), Gaps = 36/346 (10%)
Query: 136 LEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195
           L  ++ ++  S++  P       +G  +D II G    G  +A +L+E   +KVL+IE G
Sbjct: 2   LPAQQIDVQSSLLSDPSKV----AGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKG 57
Query: 196 ----GDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAV 251
                D  I    P     +  +  D  YL  P       + N    I AGKGLGGS+ +
Sbjct: 58  FYESNDGAIIED-PNAYGQIFGTTVDQNYLTVPL------INNRTNNIKAGKGLGGSTLI 110
Query: 252 QNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYNESKA-------VHG 303
               + R      +++ K+ G  GW +D   +Y  K+E  R+    +  A        HG
Sbjct: 111 NGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHG 170
Query: 304 TQGYLPVGLFKNKE--NNIIREIFETSAQELGYPCPKDM---NDRYVDVGFAELPGMTRY 358
           T G +  G   N +  + I++ +  T    LG P  +D    + R V +    +  +   
Sbjct: 171 TNGTVQSGARDNGQPWSPIMKALMNT-VSALGVPVQQDFLCGHPRGVSM---IMNNLDEN 226
Query: 359 GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV---ATGVEYVNSKGETVRVTA 415
            +R  AA A+L P   +R+NL +L    V KV+         A GV +  +K     V A
Sbjct: 227 QVRVDAARAWLLPNY-QRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFA 285
Query: 416 NKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLK 461
             EV+L AG+  +  +L  SGIG K+ LD+  +    DL VG N++
Sbjct: 286 KHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQ 331

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 145/326 (44%), Gaps = 29/326 (8%)
Query: 155 PYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG----DTPIHSRIPGMSSV 210
           P   SG   D II G    G   A RL+E  ++ VL+IE+G       PI   +     +
Sbjct: 12  PKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDI 71
Query: 211 LSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL 270
              S  DHAY     +   L   N    I +G GLGGS+ V    + R      +++  +
Sbjct: 72  FG-SSVDHAY-----ETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETV 125
Query: 271 -GYNGWGYDETLKYFVKSEDYRSVIYNE-------SKAVHGTQGYLPVGLFKNKEN-NII 321
            G  GW +D    Y +++E  R+    +       + + HG  G +  G     ++ + I
Sbjct: 126 FGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPI 185
Query: 322 REIFETSAQELGYPCPKDMN--DRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTN 378
            +   ++ ++ G P  KD    D +   G +  P  +    +R  AA  +L P   +R N
Sbjct: 186 VKALMSAVEDRGVPTKKDFGCGDPH---GVSMFPNTLHEDQVRSDAAREWLLPNY-QRPN 241
Query: 379 LYVLKRSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS 435
           L VL    V KV+++       A GVE+   KG T  V A  EV+L AG+  +  +L  S
Sbjct: 242 LQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYS 301
Query: 436 GIGPKAHLDEVKIPVKQDLRVGENLK 461
           GIG K+ L+ + I    DL VG NL+
Sbjct: 302 GIGMKSILEPLGIDTVVDLPVGLNLQ 327

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 144/312 (46%), Gaps = 30/312 (9%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSL--------S 214
           FD I+VG  +AG  +A RLSE  ++ V L+EAG D        G+  VL L        S
Sbjct: 14  FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR------GVPEVLQLDRWMELLES 67
Query: 215 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYN 273
            +D  Y  EP +     +R+AR K+     +GG S+  + +       D + + AK G  
Sbjct: 68  GYDWDYPIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGAT 122
Query: 274 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 333
           GW  +     + + E             HG  G  PV L      +        + ++ G
Sbjct: 123 GWNAEAAWPLYKRLETNEDA--GPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAG 178
Query: 334 YPCPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI 391
            P  K  N     V  A    + R   G R S++ +Y+ PI  ++ N  +L   +  +++
Sbjct: 179 IPRAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLV 236
Query: 392 INDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 450
            +     TGV+ V+S  G T R+TA  EV+L+ GAI   +LL+LSGIGP AHL E  I V
Sbjct: 237 FDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEV 296
Query: 451 KQDL-RVGENLK 461
             D   VGE+L+
Sbjct: 297 LVDSPGVGEHLQ 308

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 633 ISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPE--DLATLIRGTDYITRLEQTEAIR 690
           ++ ++ + +S G V L+S D    P +D    ++PE  D+  ++ G      +    A+ 
Sbjct: 375 LTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMA 434
Query: 691 LAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLK 750
              G  +S  +EA      ++      YIR    T  +PVGTV MG  +D  + + P+L+
Sbjct: 435 EWTGRELSPGVEA------QTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELR 488
Query: 751 VKGIKGLRVADISVLPNAI 769
           VKG+ GLRVAD SV+P  +
Sbjct: 489 VKGVTGLRVADASVMPEHV 507

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 144/312 (46%), Gaps = 30/312 (9%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSL--------S 214
           FD I+VG  +AG  +A RLSE  ++ V L+EAG D        G+  VL L        S
Sbjct: 14  FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR------GVPEVLQLDRWMELLES 67
Query: 215 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYN 273
            +D  Y  EP +     +R+AR K+     +GG S+  + +       D + + AK G  
Sbjct: 68  GYDWDYPIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGAT 122
Query: 274 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 333
           GW  +     + + E             HG  G  PV L      +        + ++ G
Sbjct: 123 GWNAEAAWPLYKRLETNEDA--GPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAG 178
Query: 334 YPCPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI 391
            P  K  N     V  A    + R   G R S++ +Y+ PI  ++ N  +L   +  +++
Sbjct: 179 IPRAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLV 236
Query: 392 INDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 450
            +     TGV+ V+S  G T R+TA  EV+L+ GAI   +LL+LSGIGP AHL E  I V
Sbjct: 237 FDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEV 296
Query: 451 KQDL-RVGENLK 461
             D   VGE+L+
Sbjct: 297 LVDSPGVGEHLQ 308

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 633 ISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPE--DLATLIRGTDYITRLEQTEAIR 690
           ++ ++ + +S G V L+S D    P +D    ++PE  D+  ++ G      +    A+ 
Sbjct: 375 LTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMA 434
Query: 691 LAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLK 750
              G  +S  +EA      ++      YIR    T  +PVGTV MG  +D  + + P+L+
Sbjct: 435 EWTGRELSPGVEA------QTDEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPELR 488
Query: 751 VKGIKGLRVADISVLPNAI 769
           VKG+ GLRVAD SV+P  +
Sbjct: 489 VKGVTGLRVADASVMPEHV 507

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 143/312 (45%), Gaps = 30/312 (9%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSL--------S 214
           FD I+VG  +AG  +A RLSE  ++ V L+EAG D        G+  VL L        S
Sbjct: 14  FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR------GVPEVLQLDRWMELLES 67
Query: 215 EFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENF-AKLGYN 273
            +D  Y  EP +     +R+AR K+     +GG S+    +       D + + AK G  
Sbjct: 68  GYDWDYPIEPQENGNSFMRHARAKV-----MGGCSSHNACIAFWAPREDLDEWEAKYGAT 122
Query: 274 GWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELG 333
           GW  +     + + E             HG  G  PV L      +        + ++ G
Sbjct: 123 GWNAEAAWPLYKRLETNEDA--GPDAPHHGDSG--PVHLMNVPPKDPTGVALLDACEQAG 178
Query: 334 YPCPKDMNDRYVDVGFAELPGMTRY--GLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVI 391
            P  K  N     V  A    + R   G R S++ +Y+ PI  ++ N  +L   +  +++
Sbjct: 179 IPRAK-FNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLV 236
Query: 392 INDQNVATGVEYVNSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 450
            +     TGV+ V+S  G T R+TA  EV+L+ GAI   +LL+LSGIGP AHL E  I V
Sbjct: 237 FDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEV 296
Query: 451 KQDL-RVGENLK 461
             D   VGE+L+
Sbjct: 297 LVDSPGVGEHLQ 308

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 633 ISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPE--DLATLIRGTDYITRLEQTEAIR 690
           ++ ++ + +S G V L+S D    P +D    ++PE  D+  ++ G      +    A+ 
Sbjct: 375 LTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMA 434
Query: 691 LAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLK 750
              G  +S  +EA      ++      YIR    T  +PVGTV MG  +D  + + P+L+
Sbjct: 435 EWTGRELSPGVEA------QTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELR 488
Query: 751 VKGIKGLRVADISVLPNAI 769
           VKG+ GLRVAD SV+P  +
Sbjct: 489 VKGVTGLRVADASVMPEHV 507

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 125/306 (40%), Gaps = 64/306 (20%)
Query: 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAY 220
            +D +IVG   +GC LA  LSE    KVL++E G   T   + +     V +L + D   
Sbjct: 26  SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGK 83
Query: 221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYD-- 278
                  +  G+ N R     G+ LGG+S +   +Y R  +  Y   +  G + W  D  
Sbjct: 84  TPVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIY---SASGVD-WDMDLV 134
Query: 279 --------ETLKYFVKSEDYRSVIYNE--SKAVHGTQGYLPVGLFKNKENNIIREIFETS 328
                   +T+ Y   S+ ++SV         VH   G+    L   +   I    F+  
Sbjct: 135 NQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGF---SLDHEEGTRITGSTFDNK 191
Query: 329 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 388
                                      TR+     AAD  L    G   NL V   + V 
Sbjct: 192 G--------------------------TRH-----AADELLN--KGNSNNLRVGVHASVE 218
Query: 389 KVIINDQN--VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLD 444
           K+I ++     ATGV Y +S G      V +  EVI++AG I   QLLLLSG+GP+++L 
Sbjct: 219 KIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLS 278
Query: 445 EVKIPV 450
            + IPV
Sbjct: 279 SLNIPV 284

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 125/306 (40%), Gaps = 64/306 (20%)
Query: 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAY 220
            +D +IVG   +GC LA  LSE    KVL++E G   T   + +     V +L + D   
Sbjct: 26  SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGK 83
Query: 221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYD-- 278
                  +  G+ N R     G+ LGG+S +   +Y R  +  Y   +  G + W  D  
Sbjct: 84  TPVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIY---SASGVD-WDMDLV 134
Query: 279 --------ETLKYFVKSEDYRSVIYNE--SKAVHGTQGYLPVGLFKNKENNIIREIFETS 328
                   +T+ Y   S+ ++SV         VH   G+    L   +   I    F+  
Sbjct: 135 NQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGF---SLDHEEGTRITGSTFDNK 191
Query: 329 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 388
                                      TR+     AAD  L    G   NL V   + V 
Sbjct: 192 G--------------------------TRH-----AADELLN--KGNSNNLRVGVHASVE 218
Query: 389 KVIINDQN--VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLD 444
           K+I ++     ATGV Y +S G      V +  EVI++AG I   QLLLLSG+GP+++L 
Sbjct: 219 KIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLS 278
Query: 445 EVKIPV 450
            + IPV
Sbjct: 279 SLNIPV 284

>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 126/298 (42%), Gaps = 47/298 (15%)
Query: 162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAY 220
            +D +IVG   +GC LA  LSE    KVL++E G   T   + +     + +L + D   
Sbjct: 26  SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGTLPTAYPNLLTSDGFIYNLQQEDDGQ 83
Query: 221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDET 280
                  +G G+ + R     G+ LGG+S +   +Y R  +   + F+  G   W  D  
Sbjct: 84  TPVERFVSGDGIDDVR-----GRVLGGTSMINAGVYARANT---KIFSASGIE-WDMDLV 134
Query: 281 LKYFVKSEDYRSVIYNESKAVHGT---QGYLPVGLFKNKENNIIREIFETSAQELGYPCP 337
            + +   ED  +++Y   K    +     +L  G+  +                 G+   
Sbjct: 135 NQTYDWVED--TIVYKPDKQAWQSLTKTAFLEAGVLPDN----------------GFSLD 176
Query: 338 KDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN- 396
            +   R     F      TR+     A+D  L    G   NL V   + V K+I +  + 
Sbjct: 177 HEAGTRLTGSTFDN--NGTRH-----ASDELLN--KGDPNNLRVAVHASVEKIIFSSNSS 227
Query: 397 --VATGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPV 450
              A GV Y +S G      V    EVI++AG I + QLLLLSG+GP+++L  + IPV
Sbjct: 228 GVTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPV 285

>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex With Cellobionolactam Length = 541

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 119/302 (39%), Gaps = 45/302 (14%)
Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR---IPGMSSVLSLSEFDHA 219
           +D IIVGA   G + A+RLSE    KVLL+E GG +   +    +   ++   L++FD  
Sbjct: 3   YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFD-- 59
Query: 220 YLAEPSQFAGLGVRN------ARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY- 272
               P  F  L   +        I + AG  +GG ++V   LY      D+   + +G+ 
Sbjct: 60  ---IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS--SSVGWP 114
Query: 273 NGWG----YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETS 328
           + W     Y   L   + S D+ S            Q YL       +  N++ ++ +  
Sbjct: 115 SSWTNHAPYTSKLSSRLPSTDHPST---------DGQRYL------EQSFNVVSQLLK-- 157
Query: 329 AQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVT 388
            Q        D N  Y D  F         G R      YL   A  R N        V+
Sbjct: 158 GQGYNQATIND-NPNYKDHVFGYSAFDFLNGKRAGPVATYLQ-TALARPNFTFKTNVMVS 215
Query: 389 KVIINDQNVATGVEYVN---SKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDE 445
            V+ N   +  GV+  +        + VT    VIL+AGA   +++L  SGIGP   +  
Sbjct: 216 NVVRNGSQI-LGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQT 274
Query: 446 VK 447
           V+
Sbjct: 275 VQ 276

>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase Length = 546

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 120/306 (39%), Gaps = 45/306 (14%)
Query: 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR---IPGMSSVLSLSE 215
           S   +D IIVGA   G + A+RLSE    KVLL+E GG +   +    +   ++   L++
Sbjct: 4   SATPYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTK 62
Query: 216 FDHAYLAEPSQFAGLGVRN------ARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK 269
           FD      P  F  L   +        I + AG  +GG ++V   LY      D+   + 
Sbjct: 63  FD-----IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS--SS 115
Query: 270 LGY-NGWG----YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREI 324
           +G+ + W     Y   L   + S D+ S            Q YL       +  N++ ++
Sbjct: 116 VGWPSSWTNHAPYTSKLSSRLPSTDHPST---------DGQRYL------EQSFNVVSQL 160
Query: 325 FETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKR 384
            +   Q        D N  Y D  F         G R      YL   A  R N      
Sbjct: 161 LK--GQGYNQATIND-NPNYKDHVFGYSAFDFLNGKRAGPVATYLQ-TALARPNFTFKTN 216
Query: 385 SKVTKVIINDQNVATGVEYVN---SKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKA 441
             V+ V+ N   +  GV+  +        + VT    VIL+AGA   +++L  SGIGP  
Sbjct: 217 VMVSNVVRNGSQI-LGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTD 275
Query: 442 HLDEVK 447
            +  V+
Sbjct: 276 MIQTVQ 281

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1381
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	1e-124
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	1e-98
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	5e-40
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	5e-95
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	7e-36
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	3e-91
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	3e-41
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	1e-86
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	8e-32
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	2e-85
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	4e-31
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	1e-82
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	7e-31
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	2e-74
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	1e-28
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	6e-29
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	2e-26
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	5e-06
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	9e-24
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	3e-04
3rce_A	724	Oligosaccharide transferase to N-glycosylate PROT;	1e-08
3rce_A	724	Oligosaccharide transferase to N-glycosylate PROT;	4e-05
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	9e-06
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	1e-05
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	2e-05
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	8e-05
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	8e-05
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	8e-05
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	9e-05
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	1e-04
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	1e-04
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	1e-04
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	1e-04
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3ayf_A	800	Nitric oxide reductase; oxidoreductase; HET: HEM B	1e-04
3ayf_A	800	Nitric oxide reductase; oxidoreductase; HET: HEM B	3e-04
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	4e-04
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	6e-04

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  396 bits (1019), Expect = e-124
 Identities = 140/628 (22%), Positives = 218/628 (34%), Gaps = 102/628 (16%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP-----IHSRIPGMSSVLSLSEFD 217
           FD +IVG   AG  +A RL+E  ++ VL++EAG   P     I    P  +  L  S++D
Sbjct: 7   FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEIT--TPSSAMDLRNSKYD 64

Query: 218 HAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGY 277
            AY                   T GK LGGSS++    +  G    ++ + + G   W +
Sbjct: 65  WAYKTTMV--RRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTW 122

Query: 278 DETLKYFVKSEDYR--SVIYNESKAVHGTQGYLPVGLFKNK-ENNIIREIFETSAQELGY 334
           D  + Y  KS  Y     +Y+      G  G +P+   +   E    RE    + + +G 
Sbjct: 123 DPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQ 182

Query: 335 PCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND 394
           P  +++ D     G          G R  +           + N+ ++      ++IIN+
Sbjct: 183 PLIENIYD-GEMDGLTHCCDTIYRGQRSGSFLF-----VKNKPNITIVPEVHSKRLIINE 236

Query: 395 QN-VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
            +    GV  V + G  +   A++EVIL+ G     +LL+LSGIGP   L    I    D
Sbjct: 237 ADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVD 296

Query: 454 LR-VGENL----KLNAQF--TGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCY 506
            R VG+NL     +                L+       +V  Y  NR GP+ +      
Sbjct: 297 SRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLE-- 354

Query: 507 CLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPL 566
                                          ++ F           + + K    R    
Sbjct: 355 -------------------------------LVGF-------PRIDKYLEKDAEYRKAKA 376

Query: 567 SNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNK 626
           +N G   F+           P  + H                    F    Q  +     
Sbjct: 377 ANGGKDPFS-----------PLGQPHFELDF------------VCMFGTAFQWHFPTPKT 413

Query: 627 RTDMGVISMSLVNPKS-CGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITR--L 683
              + V+   +  P S  G+VTL SADP   P I+    +   D+  +  G    +   L
Sbjct: 414 GDHLTVVVDLV-RPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIR-FSYDLL 471

Query: 684 EQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNA 743
            + E  +    +     +         S       +     T  +P GT  +   +    
Sbjct: 472 FKGEGFKDLVESEYPWEMPL------DSDKEMHRAVLDRCQTAFHPTGTARLS-KNIDQG 524

Query: 744 VVTPDLKVKGIKGLRVADISVLPNAIIT 771
           VV P LKV GIK LRVAD SV+P  I  
Sbjct: 525 VVDPKLKVHGIKKLRVADASVIPI-IPD 551

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  327 bits (841), Expect = 1e-98
 Identities = 94/367 (25%), Positives = 148/367 (40%), Gaps = 39/367 (10%)

Query: 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGMSSVLSLSE 215
           +G  +D II G    G  +A +L+E   +KVL+IE G    +       P     +  + 
Sbjct: 21  AGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTT 80

Query: 216 FDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNG 274
            D  YL  P     +  R     I AGKGLGGS+ +    + R      +++ K+ G  G
Sbjct: 81  VDQNYLTVP----LINNR--TNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEG 134

Query: 275 WGYDETLKYFVKSEDYR-------SVIYNESKAVHGTQGYLPVGLFKN-KENNIIREIFE 326
           W +D   +Y  K+E  R       +  ++ +   HGT G +  G   N +  + I +   
Sbjct: 135 WNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALM 194

Query: 327 TSAQELGYPCPKDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 385
            +   LG P  +D        G + +   +    +R  AA A+L P   +R+NL +L   
Sbjct: 195 NTVSALGVPVQQDFL-CGHPRGVSMIMNNLDENQVRVDAARAWLLPNY-QRSNLEILTGQ 252

Query: 386 KVTKVIINDQN---VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAH 442
            V KV+         A GV +  +K     V A  EV+L AG+  +  +L  SGIG K+ 
Sbjct: 253 MVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSV 312

Query: 443 LDEVKIPVKQDLRVGENL----------KLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLV 492
           LD+  +    DL VG N+          + ++   G   A            E    Y  
Sbjct: 313 LDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGAGQGQAVFFANF-----TETFGDYAP 367

Query: 493 NRIGPLS 499
                L+
Sbjct: 368 QARDLLN 374

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  156 bits (398), Expect = 5e-40
 Identities = 47/274 (17%), Positives = 81/274 (29%), Gaps = 41/274 (14%)

Query: 509 AHLDEVKIPVKQDLRVGENL----------KLNAQFTGPVMAFSAPLKRTVYSQEMVFKY 558
           + LD+  +    DL VG N+          + ++   G   A            E    Y
Sbjct: 311 SVLDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGAGQGQAVFFANF-----TETFGDY 365

Query: 559 LVNRIGPL-SNAGLW-SFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDE 616
                  L +    W   T       N     ++       +N + +             
Sbjct: 366 APQARDLLNTKLDQWAEETVARGGFHNVTALKVQYE---NYRNWLLD------------- 409

Query: 617 VQTAYVNLNKRTDMGV-ISMSLVNPKSCGKVTLKSADPL-APPCIDTGILSEPEDLATLI 674
              A+  L   T+  +   +  + P + G V + S+DP       D        DL    
Sbjct: 410 EDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQA 469

Query: 675 RGTDYITRLEQTEAI-RLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTV 733
             +     L    A+     G  +       +     +   W+ Y+        + V + 
Sbjct: 470 AASKLARDLTSQGAMKEYFAGETLP----GYNLVQNATLSQWSDYVLQNFRPNWHAVSSC 525

Query: 734 MMGNADDPNAVVTPDLKVKGIKGLRVADISVLPN 767
            M  + +   VV    KV G +GLRV D S+ P 
Sbjct: 526 SMM-SRELGGVVDATAKVYGTQGLRVIDGSIPPT 558

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  317 bits (814), Expect = 5e-95
 Identities = 90/320 (28%), Positives = 135/320 (42%), Gaps = 27/320 (8%)

Query: 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP-----IHSRIPGMSSVLSL 213
           SG   D II G    G   A RL+E  ++ VL+IE+G         I          +  
Sbjct: 16  SGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIE--DLNAYGDIFG 73

Query: 214 SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GY 272
           S  DHAY            +     I +G GLGGS+ V    + R      +++  + G 
Sbjct: 74  SSVDHAYETVE---LATNNQ--TALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGN 128

Query: 273 NGWGYDETLKYFVKSEDYRSVIYNESK-------AVHGTQGYLPVGLFK-NKENNIIREI 324
            GW +D    Y +++E  R+    +         + HG  G +  G      + + I + 
Sbjct: 129 EGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKA 188

Query: 325 FETSAQELGYPCPKDMNDRYVDVGFAELPG-MTRYGLRFSAADAYLTPIAGKRTNLYVLK 383
             ++ ++ G P  KD        G +  P  +    +R  AA  +L P   +R NL VL 
Sbjct: 189 LMSAVEDRGVPTKKDFG-CGDPHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQVLT 246

Query: 384 RSKVTKVIINDQNV---ATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPK 440
              V KV+++       A GVE+   KG T  V A  EV+L AG+  +  +L  SGIG K
Sbjct: 247 GQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMK 306

Query: 441 AHLDEVKIPVKQDLRVGENL 460
           + L+ + I    DL VG NL
Sbjct: 307 SILEPLGIDTVVDLPVGLNL 326

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  144 bits (365), Expect = 7e-36
 Identities = 42/271 (15%), Positives = 81/271 (29%), Gaps = 35/271 (12%)

Query: 509 AHLDEVKIPVKQDLRVGENL------KLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNR 562
           + L+ + I    DL VG NL       + ++ T              +++          
Sbjct: 307 SILEPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAH 366

Query: 563 IGPLSNAGLWSFT-----GYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEV 617
               +    W+       G+ +T     + +     +            +     +++  
Sbjct: 367 ELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWI------------VNHNVAYSELF 414

Query: 618 QTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADP-LAPPCIDTGILSEPEDLATLIRG 676
                       +    +  + P + G V +   DP L     D        DL      
Sbjct: 415 LDTA-------GVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAA 467

Query: 677 TDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMG 736
           T     +  + A++          +   +        +WT YI +      + VGT  M 
Sbjct: 468 TQLARNISNSGAMQTYFAGET---IPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMM 524

Query: 737 NADDPNAVVTPDLKVKGIKGLRVADISVLPN 767
              +   VV    +V G++GLRV D S+ P 
Sbjct: 525 -PKEMGGVVDNAARVYGVQGLRVIDGSIPPT 554

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  306 bits (785), Expect = 3e-91
 Identities = 102/366 (27%), Positives = 157/366 (42%), Gaps = 35/366 (9%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG--DTPIHSRIP-GMSSVLSLSEFDHA 219
           FD ++VGA  AG V+A RL+E   + VL++EAG   +  + +  P     ++  S FD  
Sbjct: 3   FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62

Query: 220 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYD 278
           Y       AG   R   I    G+ LGGSS+V  ++  RG++ D++ +A + G  GW +D
Sbjct: 63  YTTTAQ--AGYNGR--SIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWD 118

Query: 279 ETLKYFVKSEDY------RSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQEL 332
              ++  K+E         +       AVHGT G + + L        + +    + QE 
Sbjct: 119 NIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFP--TPLDDRVLATTQEQ 176

Query: 333 GYPCPK--DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV 390
                   DM      +G +        G R S++ AYL P A  R NL VL  ++VTK+
Sbjct: 177 SEEFFFNPDMG-TGHPLGISWSIASVGNGQRSSSSTAYLRP-AQSRPNLSVLINAQVTKL 234

Query: 391 IINDQN------VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLD 444
           + +                      T  V A KEV+L+AG++    LL LSGIG +  L 
Sbjct: 235 VNSGTTNGLPAFRCVEYAE-QEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLS 293

Query: 445 EVKIPVKQDLR-VGENL----KLNAQF--TGPVMAFSAPLKRTVYSQEMVFKYLVNRIGP 497
            V I    +   VG NL     L A F        F    + +      + ++   R GP
Sbjct: 294 SVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQT-FDNIFRDSSEFNVDLDQWTNTRTGP 352

Query: 498 LSNMHS 503
           L+ + +
Sbjct: 353 LTALIA 358

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  160 bits (407), Expect = 3e-41
 Identities = 65/277 (23%), Positives = 99/277 (35%), Gaps = 43/277 (15%)

Query: 509 AHLDEVKIPVKQDLR-VGENL----KLNAQF--TGPVMAFSAPLKRTVYSQEMVFKYLVN 561
             L  V I    +   VG NL     L A F        F    + +      + ++   
Sbjct: 290 NDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQT-FDNIFRDSSEFNVDLDQWTNT 348

Query: 562 RIGPLS----NAGLW----SFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDF 613
           R GPL+    N   W    S +    T  + A      H                    F
Sbjct: 349 RTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETI----------------F 392

Query: 614 NDEVQTAYVNLNKRTDMG---VISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDL 670
           +++    +     R D G    ++ +L++P + G + L +++P   P I+   LS   D+
Sbjct: 393 SNQ---WFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDI 449

Query: 671 ATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPV 730
            T+I+      R    +A            L   +        +   YIR    T  +PV
Sbjct: 450 FTMIQAVKSNLRFLSGQAWADFVIRPFDPRLRDPT-----DDAAIESYIRDNANTIFHPV 504

Query: 731 GTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPN 767
           GT  M        VV PDLKVKG+ GLR+ D S+LP 
Sbjct: 505 GTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPF 541

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  292 bits (750), Expect = 1e-86
 Identities = 85/308 (27%), Positives = 132/308 (42%), Gaps = 24/308 (7%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIP-GMSSVLSLSEFDHAY 220
           FD I+VG  +AG  +A RLSE  ++ V L+EAG  D  +   +       L  S +D  Y
Sbjct: 14  FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73

Query: 221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYEN-FAKLGYNGWGYDE 279
             EP         N+ ++    K +GG S+  + +       D +   AK G  GW  + 
Sbjct: 74  PIEPQ--ENG---NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEA 128

Query: 280 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKD 339
               + + E             HG  G + +        +        + ++ G P  K 
Sbjct: 129 AWPLYKRLETNE--DAGPDAPHHGDSGPVHLM--NVPPKDPTGVALLDACEQAGIPRAKF 184

Query: 340 MNDRYVDVGFAELPGM-----TRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND 394
                V  G               G R S++ +Y+ P   ++ N  +L   +  +++ + 
Sbjct: 185 NTGTTVVNGA----NFFQINRRADGTRSSSSVSYIHP-IVEQENFTLLTGLRARQLVFDA 239

Query: 395 QNVATGVEYV-NSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQD 453
               TGV+ V ++ G T R+TA  EV+L+ GAI   +LL+LSGIGP AHL E  I V  D
Sbjct: 240 DRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVD 299

Query: 454 LR-VGENL 460
              VGE+L
Sbjct: 300 SPGVGEHL 307

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  131 bits (332), Expect = 8e-32
 Identities = 66/269 (24%), Positives = 98/269 (36%), Gaps = 60/269 (22%)

Query: 509 AHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQ---EMVFKYLVNRIG 564
           AHL E  I V  D   VGE+L                       Q   E V ++   +  
Sbjct: 287 AHLAEHGIEVLVDSPGVGEHL-----------------------QDHPEGVVQFEAKQPM 323

Query: 565 PLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNL 624
              +   W    +  T     RPDL +H   +       M  ++  Y   +   +   N+
Sbjct: 324 VAESTQWWEIGIFTPTEDGLDRPDLMMH---YGSVPFD-MNTLRHGYPTTENGFSLTPNV 379

Query: 625 NKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPE--DLATLIRGTDYITR 682
                           +S G V L+S D    P +D    ++PE  D+  ++ G      
Sbjct: 380 TH-------------ARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKARE 426

Query: 683 LEQTEAI-RLAGGTLMSLNLEACSQYPWRSTHS---WTCYIRHLTTTTSNPVGTVMMGNA 738
           +    A+    G  L           P     +      YIR    T  +PVGTV MG  
Sbjct: 427 IAAQPAMAEWTGREL----------SPGVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAV 476

Query: 739 DDPNAVVTPDLKVKGIKGLRVADISVLPN 767
           +D  + + P+L+VKG+ GLRVAD SV+P 
Sbjct: 477 EDEMSPLDPELRVKGVTGLRVADASVMPE 505

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  288 bits (739), Expect = 2e-85
 Identities = 96/301 (31%), Positives = 137/301 (45%), Gaps = 16/301 (5%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSSVLSLSEFDHAYL 221
            DI+IVG  +AG +LA RLSE    +VLLIEAG   T      P     L    +D  Y 
Sbjct: 18  CDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYR 77

Query: 222 AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDET 280
            E    AG   R        G+ +GGSS +  + Y RG   D++ +    G   WG+DE 
Sbjct: 78  TEAQ--AGTAGR--AHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDEL 133

Query: 281 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDM 340
           L  F   ED+          +HG  G LP+      E + +   F  +   LG P  +  
Sbjct: 134 LPVFQAIEDH----PLGGDGIHGKGGPLPIH-LPADEVSPLARAFIEAGASLGLPRLEGH 188

Query: 341 NDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATG 400
           N     +G        R G R +AADA+LT     R NL +L  S+V ++ + + N    
Sbjct: 189 N-SGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKL-EGNQVRS 246

Query: 401 VEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGEN 459
           +E V  +  +  V A  +++L AGA+ +  LL+ SGIGP   LD   +    D+  +G N
Sbjct: 247 LEVV-GRQGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRN 304

Query: 460 L 460
           L
Sbjct: 305 L 305

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  128 bits (325), Expect = 4e-31
 Identities = 49/273 (17%), Positives = 75/273 (27%), Gaps = 65/273 (23%)

Query: 509 AHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQ----EMVFKYLVNRI 563
             LD   +    D+  +G NL                       Q         Y   + 
Sbjct: 285 DVLDAAGVGCLIDMPDIGRNL-----------------------QDHLLGAGNLYAARKP 321

Query: 564 GPLSNAGLWSFTGYI--DTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAY 621
            P S         Y+  D+     +P++ +                         V    
Sbjct: 322 VPPSRLQHSESMAYMRADSFTAAGQPEIVVGCG----------------------VAPIV 359

Query: 622 VNLNKRTDMG---VISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTD 678
                    G    +   + +P S G V +   +      ID   L    D     R   
Sbjct: 360 SESFPAPAAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRA-- 417

Query: 679 YITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNA 738
               LE +  I      L              S      +I     T  +P GT  MG  
Sbjct: 418 ----LEASRTI-GHRDELAGWRERELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGK- 471

Query: 739 DDPNAVVTPDLKVKGIKGLRVADISVLPNAIIT 771
            DP+AVV  +L++K +  L V D S++PN +  
Sbjct: 472 -DPDAVVDANLRLKALDNLFVVDASIMPN-LTA 502

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  281 bits (721), Expect = 1e-82
 Identities = 83/384 (21%), Positives = 129/384 (33%), Gaps = 61/384 (15%)

Query: 151 PDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG-DTPIHSRIPGMSS 209
           P +     S   +D IIVGA   G + A+RLSE +  KVLL+E GG  T           
Sbjct: 1   PTV-----SATPYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPW 54

Query: 210 VLS--LSEFDH-----AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSY 262
             S  L++FD      +   + +       +   I + AG  +GG ++V   LY      
Sbjct: 55  ATSSGLTKFDIPGLFESLFTDSN--PFWWCK--DITVFAGCLVGGGTSVNGALYWYPNDG 110

Query: 263 DYENFAKLGYNGW--GYDETLKYFVKSEDY-RSVIYNESKAVHGTQGYLPVGLFKNKENN 319
           D+         GW   +     Y  K      S  +        T G   +     +  N
Sbjct: 111 DFS-----SSVGWPSSWTNHAPYTSKLSSRLPSTDH------PSTDGQRYL----EQSFN 155

Query: 320 IIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNL 379
           ++ ++ +   Q        D  + Y D  F         G R      YL   A  R N 
Sbjct: 156 VVSQLLK--GQGYNQATINDNPN-YKDHVFGYSAFDFLNGKRAGPVATYLQT-ALARPNF 211

Query: 380 YVLKRSKVTKVIINDQNVATGVEYVNS---KGETVRVTANKEVILTAGAIANAQLLLLSG 436
                  V+ V+  + +   GV+  +        + VT    VIL+AGA   +++L  SG
Sbjct: 212 TFKTNVMVSNVVR-NGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSG 270

Query: 437 IGPKAHLDEVKIPVKQDLR-----------VGENL----KLNAQF--TGPVMAFSAPLKR 479
           IGP   +  V+                   VG N      +N  F         +     
Sbjct: 271 IGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFTHPSIDAYENWADVW 330

Query: 480 TVYSQEMVFKYLVNRIGPLSNMHS 503
           +        +YL N+ G  +    
Sbjct: 331 SNPRPADAAQYLANQSGVFAGASP 354

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  128 bits (324), Expect = 7e-31
 Identities = 35/282 (12%), Positives = 80/282 (28%), Gaps = 54/282 (19%)

Query: 509 AHLDEVKIPVKQDLR-----------VGENL----KLNAQF--TGPVMAFSAPLKRTVYS 551
             +  V+                   VG N      +N  F         +     +   
Sbjct: 275 DMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFTHPSIDAYENWADVWSNPR 334

Query: 552 QEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAY 611
                +YL N+ G  + A          +  +      +  +       + +      + 
Sbjct: 335 PADAAQYLANQSGVFAGASPKLNFWRAYSGSDGFTRYAQGTVRPGAA-SVNSSLPYNASQ 393

Query: 612 DFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLA 671
            F     T  V L+               +S G++ + +A       +    L  P D  
Sbjct: 394 IF-----TITVYLSTG------------IQSRGRIGIDAALR--GTVLTPPWLVNPVDKT 434

Query: 672 TLIRGTDYITR-LEQTEAI-RLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNP 729
            L++    +   +     +  +                  ++   +       T  +++ 
Sbjct: 435 VLLQALHDVVSNIGSIPGLTMITPD-------------VTQTLEEYVDAYDPATMNSNHW 481

Query: 730 VGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIIT 771
           V +  +G +   +AVV  ++KV G   L + D  ++P+ + T
Sbjct: 482 VSSTTIG-SSPQSAVVDSNVKVFGTNNLFIVDAGIIPH-LPT 521

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  257 bits (658), Expect = 2e-74
 Identities = 77/305 (25%), Positives = 119/305 (39%), Gaps = 43/305 (14%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
           +D +IVG   +GC LA  LSE    KVL++E G     +  +      +   + +     
Sbjct: 27  YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84

Query: 223 EPSQFA-GLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL 281
              +F    G+ N R     G+ LGG+S +   +Y R  +  Y          W  D   
Sbjct: 85  PVERFVSEDGIDNVR-----GRVLGGTSIINAGVYARANTSIYSASGV----DWDMDLVN 135

Query: 282 KYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMN 341
           + +   ED                             ++ +  F  +     +      +
Sbjct: 136 QTYEWVEDTI--------VYKPNSQSW---------QSVTKTAFLEAGVHPNH----GFS 174

Query: 342 DRYVDVGFAELPGMT-RYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQ--NVA 398
             + + G   + G T        AAD  L    G   NL V   + V K+I ++     A
Sbjct: 175 LDHEE-GTR-ITGSTFDNKGTRHAADELLNK--GNSNNLRVGVHASVEKIIFSNAPGLTA 230

Query: 399 TGVEYVNSKG--ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR- 455
           TGV Y +S G      V +  EVI++AG I   QLLLLSG+GP+++L  + IPV      
Sbjct: 231 TGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPY 290

Query: 456 VGENL 460
           VG+ L
Sbjct: 291 VGQFL 295

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  121 bits (306), Expect = 1e-28
 Identities = 45/266 (16%), Positives = 77/266 (28%), Gaps = 55/266 (20%)

Query: 509 AHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLS 567
           ++L  + IPV      VG+ L  N     P    +      +         +V  +G +S
Sbjct: 275 SYLSSLNIPVVLSHPYVGQFLHDN-----PRNFINILPPNPIEP------TIVTVLG-IS 322

Query: 568 NAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKR 627
           N         +                                         +       
Sbjct: 323 NDFYQCSFSSLP------FTTPPFGFF------------------------PSSSYPLPN 352

Query: 628 TDMGVISMSLVNPKSCGKVTLK-SADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQT 686
           +     +  +  P S G +TLK S++    P +     S   DL+  + G   I  L  T
Sbjct: 353 STFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLST 412

Query: 687 EAI-RLAGGTLMSLNLEACSQYPWR----STHSWTCYIRHLTTTTSNPVGTVMMGNADDP 741
           +A+       L  +        P         ++  + R    +  +  G  ++G     
Sbjct: 413 DALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVG----- 467

Query: 742 NAVVTPDLKVKGIKGLRVADISVLPN 767
             V+  D +V GI  LRV D S  P 
Sbjct: 468 -KVLDGDFRVTGINALRVVDGSTFPY 492

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score =  123 bits (309), Expect = 6e-29
 Identities = 96/673 (14%), Positives = 162/673 (24%), Gaps = 177/673 (26%)

Query: 150 PPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSS 209
            P M         +D++IVG+   GC  A  L   +  KV + + G    I S +   + 
Sbjct: 40  VPGMDI------KYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIG---EIDSGLKIGAH 89

Query: 210 VLS-------LSEFDHAYLAEPSQFA-------------------GLGVRNARIKIT--- 240
             +       + +F +    +    +                      VRN         
Sbjct: 90  KKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPL 149

Query: 241 -------AGKGLGGSSAVQNILYQRGT-SYDYENFAKLGYNGWG--YDETLKYFVKSEDY 290
                    + +GG S      +   T  +D E    L  +       E  + + K+E Y
Sbjct: 150 RNLSGQAVTRVVGGMS----TAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESY 205

Query: 291 RSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFA 350
                        T                IR     +     Y        R       
Sbjct: 206 -----------FQTGTDQFKE--------SIRHNLVLNKLTEEYK-----GQRDFQQIPL 241

Query: 351 ELPGMTRYGLRFSAADAYLT-----PIAGKRTNLYVLKRSKVTKVIINDQN-VATGVEYV 404
                +   + +S+A+                   +       +V+ N  N     +   
Sbjct: 242 AATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIH 301

Query: 405 NSK-GETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLN 463
           +   G+   + A    +LTAGA+ N QLL+ SG G     +    P      +G  +   
Sbjct: 302 DLISGDRFEIKA-DVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPELLPS-LGSYI--- 356

Query: 464 AQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLR 523
                                                  S  +C   +            
Sbjct: 357 -------TE-----------------------------QSLVFCQTVMST---------E 371

Query: 524 VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQN 583
           + +++K +    G             YS         N+     N  +     ++   Q 
Sbjct: 372 LIDSVKSDMTIRG-------TPGELTYSVTYTPGASTNKHPDWWNEKVK---NHMMQHQE 421

Query: 584 TARP----DLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVN 639
              P    D E  +    Q       +I R   F+       ++     D      +   
Sbjct: 422 DPLPIPFEDPEPQVTTLFQPSHPWHTQIHRDA-FSYGAVQQSIDSRLIVDWRFFGRTEPK 480

Query: 640 PKSCGKVTLKSADPLAPPCID-TGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMS 698
            ++    + K  D    P                           +        GG L  
Sbjct: 481 EENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMMT-----DMCVMSAKIGGFL-- 533

Query: 699 LNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDP---NAVVTPDLKVKGIK 755
                    P            HL        GT  MG   D    N  V  D +V G K
Sbjct: 534 -----PGSLPQFMEPGLVL---HL-------GGTHRMG--FDEKEDNCCVNTDSRVFGFK 576

Query: 756 GLRVADISVLPNA 768
            L +     +P A
Sbjct: 577 NLFLGGCGNIPTA 589

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score =  114 bits (286), Expect = 2e-26
 Identities = 59/355 (16%), Positives = 109/355 (30%), Gaps = 70/355 (19%)

Query: 159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG----GDTPIHSRIPGMSSVLS-L 213
           +G     +++G      V A RL E + ++ L++E G       P  +   GM +     
Sbjct: 2   NGGYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRS 60

Query: 214 SEFDHAYLAEPSQFAGLGVRNAR---------------IKITAGKGLGGSSAVQNILYQR 258
           S F +   A    F  L V N                 + +  G+G+GG S V   +   
Sbjct: 61  SWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVE 120

Query: 259 GTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN 318
                +E             E    +          +  + ++           F++ E 
Sbjct: 121 PKRSYFEEIL----PRVDSSEMYDRY----------FPRANSMLRVNHIDT-KWFEDTEW 165

Query: 319 NIIREIFETSAQELGYPCPKDMNDRYVDVGFAE-----------LPGMTRYGLR---FSA 364
                +    A + G            D G+ +           L     YG      S 
Sbjct: 166 YKFARVSREQAGKAGLGT--VFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSL 223

Query: 365 ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV-ATGVEYVNSKGETV--RVTANKEVIL 421
              YL   A     + +    +V  +        A  VE  ++ G+ +  +  + + + L
Sbjct: 224 DKTYL-AAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFL 282

Query: 422 TAGAIANAQLLLLSGI-GPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSA 475
            AG++ + +LL+ +   G   +L+           VG     N    G +M   A
Sbjct: 283 GAGSLGSTELLVRARDTGTLPNLNS---------EVGAGWGPN----GNIMTARA 324

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 49.7 bits (118), Expect = 5e-06
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 709 WRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNA 768
           +R     T           +P+G  ++G             +V G K L V D S++P +
Sbjct: 423 YRYDLFGTQLKAFADDFCYHPLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGS 476

Query: 769 I 769
           +
Sbjct: 477 V 477

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score =  106 bits (264), Expect = 9e-24
 Identities = 64/369 (17%), Positives = 111/369 (30%), Gaps = 69/369 (18%)

Query: 153 MTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG--DTP----------- 199
                  GD    +++G+   G V A RL++ + +   ++E G   DTP           
Sbjct: 3   SRTL-ADGDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGML 60

Query: 200 ------IHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAV-Q 252
                 +         V +   F      +         R + IK+  G+G+GG S V  
Sbjct: 61  NPDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNG 120

Query: 253 NILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGL 312
            +         +E            +   KYF ++               G         
Sbjct: 121 GMAV-TPKRNYFEEILPS---VDSNEMYNKYFPRAN-----------TGLGVNNIDQ-AW 164

Query: 313 FKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTR------------YGL 360
           F++ E          +AQ  G+      N    +    E  G                  
Sbjct: 165 FESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAG 224

Query: 361 RFSAADAYLTPIAGKRTNLYVLKRSKVTKVII-NDQNVATGVEYVNSKGETVR---VTAN 416
           + S    YL   A     L +    +VTKV        +  +E ++ +G  V    VTA 
Sbjct: 225 KKSLDKTYL-AQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTA- 282

Query: 417 KEVILTAGAIANAQLLLLSGI-GPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSA 475
             V   AG++  ++LL+     G   +L           +VGE    N      ++  + 
Sbjct: 283 DRVFFAAGSVGTSKLLVSMKAQGHLPNLSS---------QVGEGWGNNGNI---MVGRAN 330

Query: 476 PLKRTVYSQ 484
            +     S+
Sbjct: 331 HMWDATGSK 339

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 44.4 bits (104), Expect = 3e-04
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 725 TTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAI 769
            T +P+G V++              ++    GL V D S++P  +
Sbjct: 444 FTYHPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNV 482

>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari} Length = 724

 Score = 58.1 bits (139), Expect = 1e-08
 Identities = 51/342 (14%), Positives = 113/342 (33%), Gaps = 2/342 (0%)

Query: 795  FLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFL 854
             L      L+ ILP      +  +  F    + + + L+     L  +  +   L  +  
Sbjct: 83   SLSTLTYWLYSILPFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIAN 142

Query: 855  LLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL--FLFLLLFLLLLFLILPLFLLLFLF 912
              +   +       +++ +  +L L   +   +      LLL  + + + L  +   +  
Sbjct: 143  SYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSYSL 202

Query: 913  LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 972
               +  L  L+ L+F     +      L+ + L +L     L L++ L  +F      + 
Sbjct: 203  NFAMIGLFGLYTLVFHRKEKIFYLAIALMIIALSMLAWQYKLALIVLLFAIFAFKEEKIN 262

Query: 973  LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILP 1032
             ++   L+F+ + +  L   L   L    F +     +                +  +  
Sbjct: 263  FYMIWALIFISISILHLSGGLDPVLYQLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNT 322

Query: 1033 LFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1092
            +   +F+  +   +L+F+   +  +LL       LL    L L F+ L   L   +  + 
Sbjct: 323  IDPEVFMQRISSSVLVFILSFIGFILLCKDHKSMLLALPMLALGFMALRAGLRFTIYAVP 382

Query: 1093 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1134
            ++   F               + L L    + LIL  F  + 
Sbjct: 383  VMALGFGYFLYAFFNFLEKKQIKLSLRNKNILLILIAFFSIS 424

>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari} Length = 724

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 39/335 (11%), Positives = 100/335 (29%), Gaps = 2/335 (0%)

Query: 1013 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLF 1072
                 + +L+      L    ++         F    L +       F      ++    
Sbjct: 13   IKYTCILILIAFAFSVLCRLYWVAWASEFYEFFFNDQLMITTNDGYAFAEGARDMIAGFH 72

Query: 1073 LLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLL 1132
                       L      L+ ILP      +  +  F    + + + L+     L  +  
Sbjct: 73   QPNDLSYFGSSLSTLTYWLYSILPFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGF 132

Query: 1133 LFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL--FLFLLLFLLLLFLI 1190
            +   L  +    +   +       +++ +  +L L   +   +      LLL  + + + 
Sbjct: 133  IAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIY 192

Query: 1191 LPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL 1250
            L  +   +     +  L  L+ L+F     +      L+ + L +L     L L++ L  
Sbjct: 193  LWWYPSSYSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMIIALSMLAWQYKLALIVLLFA 252

Query: 1251 LFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLL 1310
            +F      +  ++   L+F+ + +  L   L   L    F +     +            
Sbjct: 253  IFAFKEEKINFYMIWALIFISISILHLSGGLDPVLYQLKFYVFKASDVQNLKDAAFMYFN 312

Query: 1311 FLLLLFLILPLFLLLFLFLLLLFLFLLLLFLLSSF 1345
                +  +  +   +F+  +   + + +L  +   
Sbjct: 313  VNETIMEVNTIDPEVFMQRISSSVLVFILSFIGFI 347

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 48.9 bits (117), Expect = 9e-06
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 381 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 432
               S+V K+++ND +   G            + A K V+L  G    N +++
Sbjct: 267 TRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA-KSVVLATGGYGMNKEMI 318

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 352 LPGMT-RYGLRFSAAD----AYLTPIAG--KRTNLYVLKRSKVTKVIINDQNVATGVEYV 404
           + G +     R +         +  +     + N+ +   ++  +V+ +D+    G+   
Sbjct: 236 MGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVK 295

Query: 405 NSKGETVRVTANKEVILTAG 424
                   V A   VIL  G
Sbjct: 296 GMYKGYYWVKA-DAVILATG 314

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 48.2 bits (115), Expect = 2e-05
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 11/103 (10%)

Query: 338 KDMNDRYVDVGFAELPGMTRY-GLRFSAAD----AYLTPI--AGKRTNLYVLKRSKVTKV 390
             M     DVG   + G +     R +            +     +    +   S+V ++
Sbjct: 224 TSMGADMTDVGR--MGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRI 281

Query: 391 IINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 432
           + +     TGV           + A   V++ AG    N + +
Sbjct: 282 LEDASGKVTGVLVKGEYTGYYVIKA-DAVVIAAGGFAKNNERV 323

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885

 Score = 46.1 bits (110), Expect = 8e-05
 Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 20/191 (10%)

Query: 794 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL-----------------FLLLFLLLLF 836
              +L  L+       F++L + +L    ++ +                  +    ++L 
Sbjct: 658 FGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLG 717

Query: 837 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 896
               +  ++F +             +  +       L   ++L + ++   L +F+    
Sbjct: 718 GYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHE-LMGAVYLQVSIISQAL-IFVTRSR 775

Query: 897 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 956
              F+  P  LL+  FL+   L+  L  +        I  +       + L  ++ +  L
Sbjct: 776 SWSFVERPGALLMIAFLIAQ-LIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPL 834

Query: 957 LLFLLLLFLIL 967
            +F   +  IL
Sbjct: 835 DVFKFAIRYIL 845

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885

 Score = 46.1 bits (110), Expect = 8e-05
 Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 20/191 (10%)

Query: 954  LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL-----------------FLLLFLLLLF 996
               +L  L+       F++L + +L    ++ +                  +    ++L 
Sbjct: 658  FGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLG 717

Query: 997  LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1056
                +  ++F +             +  +       L   ++L + ++   L +F+    
Sbjct: 718  GYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHE-LMGAVYLQVSIISQAL-IFVTRSR 775

Query: 1057 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1116
               F+  P  LL+  FL+   L+  L  +        I  +       + L  ++ +  L
Sbjct: 776  SWSFVERPGALLMIAFLIAQ-LIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPL 834

Query: 1117 LLFLLLLFLIL 1127
             +F   +  IL
Sbjct: 835  DVFKFAIRYIL 845

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885

 Score = 46.1 bits (110), Expect = 8e-05
 Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 20/191 (10%)

Query: 1114 LFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFL-----------------FLLLFLLLLF 1156
               +L  L+       F++L + +L    ++ +                  +    ++L 
Sbjct: 658  FGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLG 717

Query: 1157 LILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFL 1216
                +  ++F +             +  +       L   ++L + ++   L +F+    
Sbjct: 718  GYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHE-LMGAVYLQVSIISQAL-IFVTRSR 775

Query: 1217 LLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1276
               F+  P  LL+  FL+   L+  L  +        I  +       + L  ++ +  L
Sbjct: 776  SWSFVERPGALLMIAFLIAQ-LIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPL 834

Query: 1277 LLFLLLLFLIL 1287
             +F   +  IL
Sbjct: 835  DVFKFAIRYIL 845

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 45.1 bits (106), Expect = 9e-05
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 149 YPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195
           Y  DM  Y +     D+++VGA +AG   A  +S+  +++V +IE  
Sbjct: 30  YMTDMITYAE----TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS 72

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920

 Score = 45.8 bits (109), Expect = 1e-04
 Identities = 22/169 (13%), Positives = 58/169 (34%), Gaps = 26/169 (15%)

Query: 778 FLLLFLFLLLLFLLLFLFLLLFLLLL--------------FLILPL-----FLLLFLFLL 818
            + L L++ +L   L + L++F+ +               +   P+      L     LL
Sbjct: 703 EIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVLL 762

Query: 819 LLFLLLFLFLLLFLLLLFL---ILPLFLLLFLFLLLLFLLLFLFLLLFLL----LLFLIL 871
            + L +  ++ +  +        +         +L L + L    L+F+       +  +
Sbjct: 763 GVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSSI 822

Query: 872 PLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 920
           P + L     L+  L     +  +       +   + +++F   +F ++
Sbjct: 823 PSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIM 871

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 25/173 (14%), Positives = 56/173 (32%), Gaps = 31/173 (17%)

Query: 792 LFLFLLLFLLLLFLILPLFLLLFLFLL-----------------------LLFLLLFLFL 828
           L +FL L++ +L   L + L++F+ +                        L  L     L
Sbjct: 702 LEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVL 761

Query: 829 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FLFL 881
           L  +L +   + +  +         +  F  +   L L   +   +L+        F   
Sbjct: 762 LGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSS 821

Query: 882 LLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 933
           +  + L     L+ +L   F I   F      ++ +  +      +F ++  +
Sbjct: 822 IPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 25/173 (14%), Positives = 56/173 (32%), Gaps = 31/173 (17%)

Query: 920  LFLFLLLFLLLLFLILPLFLLLFLFLL-----------------------LLFLLLFLFL 956
            L +FL L++ +L   L + L++F+ +                        L  L     L
Sbjct: 702  LEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVL 761

Query: 957  LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FLFL 1009
            L  +L +   + +  +         +  F  +   L L   +   +L+        F   
Sbjct: 762  LGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSS 821

Query: 1010 LLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1061
            +  + L     L+ +L   F I   F      ++ +  +      +F ++  +
Sbjct: 822  IPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 25/173 (14%), Positives = 56/173 (32%), Gaps = 31/173 (17%)

Query: 1048 LFLFLLLFLLLLFLILPLFLLLFLFLL-----------------------LLFLLLFLFL 1084
            L +FL L++ +L   L + L++F+ +                        L  L     L
Sbjct: 702  LEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVL 761

Query: 1085 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FLFL 1137
            L  +L +   + +  +         +  F  +   L L   +   +L+        F   
Sbjct: 762  LGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSS 821

Query: 1138 LLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1189
            +  + L     L+ +L   F I   F      ++ +  +      +F ++  +
Sbjct: 822  IPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 25/173 (14%), Positives = 56/173 (32%), Gaps = 31/173 (17%)

Query: 1176 LFLFLLLFLLLLFLILPLFLLLFLFLL-----------------------LLFLLLFLFL 1212
            L +FL L++ +L   L + L++F+ +                        L  L     L
Sbjct: 702  LEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVL 761

Query: 1213 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL-------FLFL 1265
            L  +L +   + +  +         +  F  +   L L   +   +L+        F   
Sbjct: 762  LGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSS 821

Query: 1266 LLLFLLLFLFLLLFLL-LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFL 1317
            +  + L     L+ +L   F I   F      ++ +  +      +F ++  +
Sbjct: 822  IPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-04
 Identities = 97/679 (14%), Positives = 198/679 (29%), Gaps = 178/679 (26%)

Query: 31  EYNELYCKYIKYIHEKFGPNFEYDQLLFSYVSPKDRVTYYNVLKTKYEKCPDFWPYIKYI 90
           E  E   +Y K I   F   F  +      V    +    ++L  + E        I +I
Sbjct: 10  ETGEHQYQY-KDILSVFEDAFVDN-FDCKDVQDMPK----SILSKE-E--------IDHI 54

Query: 91  HEKFGPNFEYDQLLFSYVSPKDRVIYY----NVLKTKYEKCPDFWPY----PRLEKERYN 142
                        LF  +  K   +       VL+  Y+            P +    Y 
Sbjct: 55  IMS-KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 143 IYRSVIY--PPDMTPY-VKSGDCFD--------------IIIVGASAAGC---VLAN--- 179
             R  +Y        Y V     +               ++I G    G     +A    
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLGSGKTWVALDVC 171

Query: 180 ---RLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNAR 236
              ++      K+  +         + +  +  +  L + D  + +     +     N +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSS-----NIK 224

Query: 237 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY----NGWGYDETLKYF-------V 285
           ++I + +     + ++ +L  +     YEN          N     +    F       +
Sbjct: 225 LRIHSIQ-----AELRRLLKSK----PYEN----CLLVLLNVQ-NAKAWNAFNLSCKILL 270

Query: 286 KSEDYRSVI--YNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDR 343
            +   + V    + +   H +  +  + L  ++  +++ +  +   Q+L    P+++   
Sbjct: 271 TTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----PREVLTT 325

Query: 344 YVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEY 403
                    P       R S     +        N   +   K+T +I +  NV    EY
Sbjct: 326 --------NP------RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 404 VNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVK------QDLRVG 457
                   R                 ++     + P        IP         D+   
Sbjct: 372 --------R-----------------KMFDRLSVFP----PSAHIPTILLSLIWFDVIKS 402

Query: 458 ENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMH-----SY----CYCL 508
           + + +  +     +    P + T+    +  +  V        +H      Y     +  
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYALHRSIVDHYNIPKTFDS 461

Query: 509 AHLDEVKIPVKQD----LRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIG 564
             L    IP   D      +G +LK N +    +  F     R V+   + F++L  +I 
Sbjct: 462 DDL----IPPYLDQYFYSHIGHHLK-NIEHPERMTLF-----RMVF---LDFRFLEQKIR 508

Query: 565 PLSNAGLWSFTGYI-DTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVN 623
             S A  W+ +G I +TLQ      L+ +  Y   ND +    +    DF   +     N
Sbjct: 509 HDSTA--WNASGSILNTLQ-----QLKFYKPYICDNDPKYERLVNAILDF---LPKIEEN 558

Query: 624 LNKRTDMGVISMSLVNPKS 642
           L       ++ ++L+    
Sbjct: 559 LICSKYTDLLRIALMAEDE 577

>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A* Length = 800

 Score = 45.4 bits (107), Expect = 1e-04
 Identities = 58/439 (13%), Positives = 144/439 (32%), Gaps = 39/439 (8%)

Query: 974  FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLF---------LLLFLFLLLFL 1024
            F+ +  LF +  +F  L           F + +++ +L F         L +F     +L
Sbjct: 309  FVVVSALFFVQTMFGALLAHYYTEPDSFFGINWIYDILPFNIAKGYHLQLAIFWIATAWL 368

Query: 1025 LLLFLILPL----------FLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLL----- 1069
             +   I PL           L+  LF  L+ L+    +  +L +   +   + LL     
Sbjct: 369  GMGIFIAPLVGGQEPKKQGLLVDLLFWALVVLVGGSMIGQWLGVNGYLGNEWFLLGHQGW 428

Query: 1070 ------FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLL 1123
                   ++ ++L + + L+L +    +   L         + LLF         ++   
Sbjct: 429  EYIELGRIWQIILVVGMLLWLFIVFRGVKRGLKRESDKGGLIHLLFYSAIAVPFFYIFAF 488

Query: 1124 FLILPLFLLL---FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFL 1180
            F+       +   + + ++   +  +F +  ++++  +L    L+     +  L     +
Sbjct: 489  FIQPDTNFTMADFWRWWIIHLWVEGIFEVFAVVVIGFLLVQLRLVTKKSTVRALYFQFTI 548

Query: 1181 LLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 1240
            LL   ++ +    +      + +    +F  L +  L L ++          ++      
Sbjct: 549  LLGSGVIGIGHHYYYNGSPEVWIALGAVFSALEVIPLTLLIL---EAYEQYKMMRDGGAN 605

Query: 1241 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1300
            F +   F  L+   +   +   +F  L+ L    +      L        ++    +  +
Sbjct: 606  FPYKATFWFLISTAIWNLVGAGVFGFLINLPAVSYFEHGQFLTPAHGHAAMMGVYGMFAI 665

Query: 1301 FLLLFLFLLLFLLLLF---LILPLFLLLFLFLLLLFLFLLLLFLLSSFSSSSSSSFSYSS 1357
             +LL+    +     +    +     +L + L  + +  LL   +     +    +  S 
Sbjct: 666  AVLLYSLRNIVKPEAWNDKWLKFSCWMLNIGLAGMVVITLLPVGILQMKEAFIHGYWASR 725

Query: 1358 SSSSSSFSPLSPLFDFRTI 1376
            S S      +  L   R +
Sbjct: 726  SPSFLQQDVVQNLLLVRAV 744

>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A* Length = 800

 Score = 44.3 bits (104), Expect = 3e-04
 Identities = 47/408 (11%), Positives = 130/408 (31%), Gaps = 31/408 (7%)

Query: 780  LLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLIL 839
            L   ++   +L + +F+   +          L+  LF  L+ L+    +  +L +   + 
Sbjct: 358  LAIFWIATAWLGMGIFIAPLVGGQEPKKQGLLVDLLFWALVVLVGGSMIGQWLGVNGYLG 417

Query: 840  PLFLLL-----------FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLL 888
              + LL            ++ ++L + + L+L +    +   L         + LLF   
Sbjct: 418  NEWFLLGHQGWEYIELGRIWQIILVVGMLLWLFIVFRGVKRGLKRESDKGGLIHLLFYSA 477

Query: 889  FLFLLLFLLLLFLILPLFLLL---FLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 945
                  ++   F+       +   + + ++   +  +F +  ++++  +L    L+    
Sbjct: 478  IAVPFFYIFAFFIQPDTNFTMADFWRWWIIHLWVEGIFEVFAVVVIGFLLVQLRLVTKKS 537

Query: 946  LLLFLLLFLFLLLFLLLLFL------------ILPLFLLLFLFLLLLFLLLFLFLLLFLL 993
             +  L     +LL   ++ +             + L  +     ++   LL L       
Sbjct: 538  TVRALYFQFTILLGSGVIGIGHHYYYNGSPEVWIALGAVFSALEVIPLTLLILEAYEQYK 597

Query: 994  LLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL-----FLLL 1048
            ++      F     F  L+   ++  +   +    + LP          L        ++
Sbjct: 598  MMRDGGANFPYKATFWFLISTAIWNLVGAGVFGFLINLPAVSYFEHGQFLTPAHGHAAMM 657

Query: 1049 FLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLL 1108
             ++ +  + +L   L   +    +           L + L  + +I  L + +       
Sbjct: 658  GVYGMFAIAVLLYSLRNIVKPEAWNDKWLKFSCWMLNIGLAGMVVITLLPVGILQMKEAF 717

Query: 1109 FLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLF 1156
                +       L   ++  L L+  +   +  + +   L+  +  LF
Sbjct: 718  IHGYWASRSPSFLQQDVVQNLLLVRAVPDTIFLIGVVALLVFAIKALF 765

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 381 VLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI-ANAQLL 432
                +V  ++ +D     G+      G+ V V A + V+L  G+   N +++
Sbjct: 219 AEYDMRVQTLVTDDTGRVVGIVAKQ-YGKEVAVRARRGVVLATGSFAYNDKMI 270

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 42.8 bits (100), Expect = 6e-04
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIE 193
           FD+ +VG+   G  +A R++     +VL++E
Sbjct: 8   FDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1381
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	100.0
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	100.0
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	100.0
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	100.0
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	100.0
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	100.0
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	100.0
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.55
3dme_A	369	Conserved exported protein; structural genomics, P	99.12
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.09
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.09
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.08
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.96
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.96
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.93
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.91
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.91
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.89
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.88
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.87
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.86
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.85
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.83
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.83
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.83
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.81
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.78
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.77
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.75
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.72
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.68
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.67
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.67
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.67
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.66
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.66
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.63
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.61
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.58
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.57
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.56
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.56
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.55
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.47
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.45
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.44
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.41
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.41
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.39
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.38
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.33
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.31
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.29
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.28
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.26
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.25
3atr_A	453	Conserved archaeal protein; saturating double bond	98.24
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.23
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.21
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.21
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.2
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.19
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.18
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.17
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.16
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.16
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.16
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.15
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.15
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.11
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.11
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.09
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.08
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.06
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.02
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.02
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.98
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.97
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.97
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.93
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.93
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.89
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.88
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.86
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.78
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.76
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	97.73
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.72
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.71
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.68
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.68
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.66
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.65
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.64
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.64
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.63
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.59
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.55
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.54
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.54
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.53
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.52
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.5
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.43
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.4
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.26
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.26
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.25
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.19
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.14
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.13
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.13
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.13
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.12
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.1
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.08
2cul_A	232	Glucose-inhibited division protein A-related PROT	97.04
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.03
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	96.99
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	96.95
4dna_A	463	Probable glutathione reductase; structural genomic	96.92
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.92
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	96.92
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	96.91
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.9
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	96.9
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.89
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	96.88
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.87
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	96.86
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	96.86
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	96.83
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.82
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	96.81
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.81
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	96.81
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	96.79
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	96.78
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	96.78
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	96.77
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	96.77
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	96.75
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	96.75
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.74
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.74
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	96.71
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.7
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.7
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	96.68
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	96.68
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	96.67
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	96.66
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.66
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.65
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	96.65
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	96.63
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	96.63
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	96.63
2bry_A	497	NEDD9 interacting protein with calponin homology a	96.63
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	96.62
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	96.62
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	96.61
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.6
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	96.59
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.58
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	96.56
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	96.55
1ojt_A	482	Surface protein; redox-active center, glycolysis,	96.53
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	96.5
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	96.49
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	96.48
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	96.48
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.46
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.45
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.41
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.4
1fec_A	490	Trypanothione reductase; redox-active center, oxid	96.4
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	96.38
4hb9_A	412	Similarities with probable monooxygenase; flavin,	96.37
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	96.36
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	96.31
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	96.3
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.3
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	96.22
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.21
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	96.19
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.19
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.18
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.14
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.11
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	96.07
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.03
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.98
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	95.83
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	95.82
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	95.71
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	95.67
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	95.63
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.59
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	95.58
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	95.53
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	95.16
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	95.1
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	94.7
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	94.53
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	94.05
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	93.94
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	93.93
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	93.46
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	92.68
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	89.05
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	87.87
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	87.8
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	86.94
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	86.54
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	85.22
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	84.88
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	84.72
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	84.54
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	83.28
1id1_A	153	Putative potassium channel protein; RCK domain, E.	82.99
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	82.85
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	82.84
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	81.98
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	81.03
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	80.83
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	80.21
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	80.2
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	80.16

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=1.8e-118  Score=1067.26  Aligned_cols=524  Identities=27%  Similarity=0.343  Sum_probs=443.6

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC--CCccccCCccccccC-CcccCcccccccccccccCCCceee
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT--PIHSRIPGMSSVLSL-SEFDHAYLAEPSQFAGLGVRNARIK  238 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~--~~~~~iP~~~~~l~~-s~~DW~Y~TePq~~a~~gl~~r~i~  238 (1381)
                      +|||||||||+|||++|+||||++++||+|||||++.  +...++|..+..... +++||+|+|+||++    .+||++.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~~----~~~r~~~   77 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAG----YNGRSIA   77 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCGG----GTTCCCB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCCC----CCCceEe
Confidence            6999999999999999999999999999999999975  445678887665554 78999999999984    6899999


Q ss_pred             cccccccCccccccceEEecCCccchHHHhhc-CCCCCChhhHHHHHHHhcccccCCc------ccCCCCCCCCCCcccc
Q psy11618        239 ITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIY------NESKAVHGTQGYLPVG  311 (1381)
Q Consensus       239 ~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~l-Gn~GWswedLlPYFkKsE~~~~p~~------~~d~~~HG~~GPL~Vs  311 (1381)
                      |+|||++||||+||+|+|+||+++|||+|++. |++||+||+++|||+|+|++..+..      ..|+++||.+||++++
T Consensus        78 ~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~v~  157 (566)
T 3fim_B           78 YPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSIS  157 (566)
T ss_dssp             CCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEEEB
T ss_pred             ccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCccccCCCCCeeee
Confidence            99999999999999999999999999999997 9999999999999999999986532      1245799999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHc--CCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEE
Q psy11618        312 LFKNKENNIIREIFETSAQEL--GYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTK  389 (1381)
Q Consensus       312 ~~p~~e~~pl~~~f~eA~eeL--G~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtR  389 (1381)
                      ++++.  +|..+.+.+|++++  |++.++|.|+++ +.|+++.+.++++|+|+|++++|++|+. +|+|++|+|+|+|+|
T Consensus       158 ~~~~~--~~~~~~~~~a~~~~~~G~~~~~d~n~~~-~~G~~~~~~~~~~g~R~sa~~ayL~p~~-~r~NL~Vlt~a~V~r  233 (566)
T 3fim_B          158 LPGFP--TPLDDRVLATTQEQSEEFFFNPDMGTGH-PLGISWSIASVGNGQRSSSSTAYLRPAQ-SRPNLSVLINAQVTK  233 (566)
T ss_dssp             SCSSC--CTHHHHHHHHHHHTHHHHCBCSCGGGSC-CCEEEECCBSEETTEECCHHHHTHHHHT-TCTTEEEESSCEEEE
T ss_pred             cCCCC--CHHHHHHHHHHHHHhcCCCccCCCCCCC-cceEEeeeeecCCCEEcCHHHHHhhhhc-cCCCeEEECCCEEEE
Confidence            98876  89999999999999  999988999888 8899999999999999999999999988 899999999999999


Q ss_pred             EEec---CC-CeEEEEEEEecCC-eEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhcccc
Q psy11618        390 VIIN---DQ-NVATGVEYVNSKG-ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLN  463 (1381)
Q Consensus       390 Ilfd---~g-~RAtGVE~vd~~G-r~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDH  463 (1381)
                      |++|   ++ +||+|||+.+.+| ++++++|+|||||||||++||||||+|||||++||+++||||++|+| ||||||||
T Consensus       234 Il~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGIGp~~~L~~~gI~vv~dlPgVG~NLqDH  313 (566)
T 3fim_B          234 LVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDH  313 (566)
T ss_dssp             EECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCC
T ss_pred             EEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHhcCCCChHHHhhcCCCceecCcchhhhhhcC
Confidence            9998   34 7999999998546 88999999999999999999999999999999999999999999999 99999999


Q ss_pred             ccCCceEEEecCCccccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccc
Q psy11618        464 AQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSA  543 (1381)
Q Consensus       464 p~v~~vvf~l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~  543 (1381)
                      +.+. +.++.+++.+.+..                               .               . +           
T Consensus       314 ~~~~-~~~~~~~~~~~~~~-------------------------------~---------------~-~-----------  334 (566)
T 3fim_B          314 LLLP-AAFFVNSNQTFDNI-------------------------------F---------------R-D-----------  334 (566)
T ss_dssp             EEEC-CEEEESCSCSSGGG-------------------------------G---------------T-C-----------
T ss_pred             ccce-EEEEeCCCcccchh-------------------------------h---------------c-C-----------
Confidence            9984 77877654320000                               0               0 0           


Q ss_pred             cchhhhhhHHHHHHHHHcCCCCCccccccceEEEeecCC-------------CCCCCCeeeeeeccccccchhhhhhhhc
Q psy11618        544 PLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQ-------------NTARPDLEIHLLYFQQNDIRNMCKIKRA  610 (1381)
Q Consensus       544 pl~~tv~s~~~~~eYl~~~sGPLss~g~~e~~gFl~S~~-------------~~~~PDIq~~~~p~s~~~~d~~~~vk~~  610 (1381)
                          .....+...+|..+++||+++.+ .+..+|.+++.             ....||+|+++.+...  .+        
T Consensus       335 ----~~~~~~~~~~~~~~~~G~l~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~pd~~~~~~~~~~--~~--------  399 (566)
T 3fim_B          335 ----SSEFNVDLDQWTNTRTGPLTALI-ANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQWF--HP--------  399 (566)
T ss_dssp             ----HHHHHHHHHHHHHHSCSGGGCCS-CSEEEEECCCTTCGGGGTSCCCSSSTTSCSEEEEEESSCC--CT--------
T ss_pred             ----hHHHHHHHHHHHhcCCCCcccCh-hhheeeeccccchhhhhhhccccccCCCCCEEEEecccch--hh--------
Confidence                00002334556666666666543 34455555431             2256888765533211  00        


Q ss_pred             cccchhHHHHHhccCCCCCeEEEEEeecccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHH
Q psy11618        611 YDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIR  690 (1381)
Q Consensus       611 ~g~~~~~~~~~~~p~~~~~~~tI~v~Ll~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk  690 (1381)
                                ...+..+.+++++.+++++|+|||+|||+|+||.++|.||+||++||.|++.+++|+|.+||++++++++
T Consensus       400 ----------~~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~  469 (566)
T 3fim_B          400 ----------AIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWA  469 (566)
T ss_dssp             ----------TSCCCSSCCEEEEEEEESSCSCCBEEECSSSCTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGT
T ss_pred             ----------cccCCCCCCEEEEEEeecCCccceEEEecCCCCCCCceeccccCCCccHHHHHHHHHHHHHHHHhCcccC
Confidence                      0011123457889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccccccCCccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCC
Q psy11618        691 LAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAII  770 (1381)
Q Consensus       691 ~~g~~e~~~plPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPS  770 (1381)
                      ++..++..   |++  .+.+|||||++|+|++..|.|||+||||||+++|++||||+++|||||+|||||||||||++|+
T Consensus       470 ~~~~~~~~---P~~--~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~  544 (566)
T 3fim_B          470 DFVIRPFD---PRL--RDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPN  544 (566)
T ss_dssp             TTEEEESS---GGG--SCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBBTTCBSEEECSGGGCCSCCS
T ss_pred             CccccccC---CCc--ccccchHHHHHHHhhcccccccccCccccCCcccCCccCCCCCeEccCCCcEEcccccCCCCCC
Confidence            88766542   332  2457999999999999999999999999999877669999999999999999999999999999


Q ss_pred             CCchHHHHHHHH
Q psy11618        771 TQSDAISFLLLF  782 (1381)
Q Consensus       771 gNpqApVyMIA~  782 (1381)
                      +|||+|+||||-
T Consensus       545 ~n~~~~~~~iae  556 (566)
T 3fim_B          545 AHTQGPIYLVGK  556 (566)
T ss_dssp             SCTHHHHHHHHH
T ss_pred             cCcHHHHHHHHH
Confidence            999999999985

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=5.9e-114  Score=1031.83  Aligned_cols=538  Identities=23%  Similarity=0.286  Sum_probs=418.8

Q ss_pred             CCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC---CCccccCCccccccCCcccCcccccccccccccCCC
Q psy11618        158 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRN  234 (1381)
Q Consensus       158 ~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~---~~~~~iP~~~~~l~~s~~DW~Y~TePq~~a~~gl~~  234 (1381)
                      ..+++|||||||||+|||++|+||||++++||+|||||++.   .+...+|..+....++++||+|+|+||+     .+|
T Consensus        15 ~~~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~-----~~~   89 (583)
T 3qvp_A           15 VSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-----TNN   89 (583)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-----TTS
T ss_pred             cCCCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC-----CCC
Confidence            34578999999999999999999999999999999999943   2344566666666678899999999986     378


Q ss_pred             ceeecccccccCccccccceEEecCCccchHHHhhcCCC-CCChhhHHHHHHHhcccccCCc-------ccCCCCCCCCC
Q psy11618        235 ARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYN-GWGYDETLKYFVKSEDYRSVIY-------NESKAVHGTQG  306 (1381)
Q Consensus       235 r~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~-GWswedLlPYFkKsE~~~~p~~-------~~d~~~HG~~G  306 (1381)
                      |++.|+|||++||||+||+|+|+||++.|||+|++.|++ ||+||+++|||||+|++..+..       ..++++||.+|
T Consensus        90 r~~~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~G  169 (583)
T 3qvp_A           90 QTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNG  169 (583)
T ss_dssp             CCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSS
T ss_pred             CeeeccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCccccCCCC
Confidence            889999999999999999999999999999999999988 9999999999999999976532       12467899999


Q ss_pred             CccccCCCCC-CCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCC-CCcccchhhhcchhhhcCCCCeEEEcC
Q psy11618        307 YLPVGLFKNK-ENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTR-YGLRFSAADAYLTPIAGKRTNLYVLKR  384 (1381)
Q Consensus       307 PL~Vs~~p~~-e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~-~G~RsSAa~AYL~Pa~~~R~NLtILTn  384 (1381)
                      |++++++... ..+|..+++.+|++++|++.++|+|+++ +.|+++.+.+++ +|+|+|++++|++|++ +|+|++|+|+
T Consensus       170 pl~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~D~n~~~-~~G~~~~~~t~~~~g~R~saa~ayL~p~~-~r~NL~V~t~  247 (583)
T 3qvp_A          170 TVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGD-PHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQVLTG  247 (583)
T ss_dssp             SEEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSC-CCEEECCCBSBCTTCBBCCHHHHHTTTTT-TCTTEEEECS
T ss_pred             CEEecCCCCcccCCHHHHHHHHHHHHcCCCcCCCCCCCC-CceecccceeEcCCCcEecHHHHHHHHhh-cCCCcEEEcC
Confidence            9999876221 2368999999999999999988999988 899998888875 7999999999999988 8999999999


Q ss_pred             cEEEEEEecC---CCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCccchhcc
Q psy11618        385 SKVTKVIIND---QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLK  461 (1381)
Q Consensus       385 A~VtRIlfd~---g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLPVGrNLQ  461 (1381)
                      |+|+||++|+   ++||+|||+.+++|++++++|+|||||||||++||||||+|||||++||+++||||++|+|||||||
T Consensus       248 a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGIGp~~~L~~~GI~vv~dLPVG~NLq  327 (583)
T 3qvp_A          248 QYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQ  327 (583)
T ss_dssp             CEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCCTTCCBB
T ss_pred             CEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCCCCHHHHHhCCCCceeeCccccchh
Confidence            9999999983   6799999999558999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCceEEEecCCccccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccc
Q psy11618        462 LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAF  541 (1381)
Q Consensus       462 DHp~v~~vvf~l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~  541 (1381)
                      ||+.+ .+.++.+++..                 |+.+ ....            ....           ..       +
T Consensus       328 DH~~~-~~~~~~~~~~~-----------------~~~~-~~~~------------~~~~-----------~~-------~  358 (583)
T 3qvp_A          328 DQTTA-TVRSRITSAGA-----------------GQGQ-AAWF------------ATFN-----------ET-------F  358 (583)
T ss_dssp             CCEEE-EEEEEECGGGC-----------------SBCE-EEEE------------EEHH-----------HH-------H
T ss_pred             hCccc-eEEEEecCCcc-----------------cccc-cccc------------ccHH-----------Hh-------h
Confidence            99998 48887764321                 0000 0000            0000           00       0


Q ss_pred             cccchhhhhhHHHHHHHHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhHHHHH
Q psy11618        542 SAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAY  621 (1381)
Q Consensus       542 ~~pl~~tv~s~~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~  621 (1381)
                      +.       ...+..+|...+.+++++.. .+..++.+      .++++.....  .  .+  ....+.....+     .
T Consensus       359 ~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~--~--~~--~~~~~~~~~~~-----~  413 (583)
T 3qvp_A          359 GD-------YSEKAHELLNTKLEQWAEEA-VARGGFHN------TTALLIQYEN--Y--RD--WIVNHNVAYSE-----L  413 (583)
T ss_dssp             GG-------GHHHHHHHHHHCHHHHHHHH-HHTTSCSC------HHHHHHHHHH--H--HH--HHHHSCCEEEE-----E
T ss_pred             cc-------chHHHHHHHHhhcchhhccc-ccccCccc------cHHHHhhhcc--c--hh--hhccCCCCcce-----e
Confidence            00       00111112211111111000 00000000      0011100000  0  00  00000000000     0


Q ss_pred             hccCCCCCeEEEEEeecccCcCcEEEeecCCCCCCccc-cCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccC
Q psy11618        622 VNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCI-DTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLN  700 (1381)
Q Consensus       622 ~~p~~~~~~~tI~v~Ll~P~SRGsV~L~SsDP~d~PvI-DpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~p  700 (1381)
                      ...  ..+..+...+.++|+|||+|||+|+||.++|.| |+||++||.|++.+++|+|.+||+++++++++++.++.   
T Consensus       414 ~~~--~~~~~~~~~~~~~P~SrG~v~l~s~dp~~~P~i~~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---  488 (583)
T 3qvp_A          414 FLD--TAGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGET---  488 (583)
T ss_dssp             EEE--CTTSEEEEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCSHHHHHHHHHHHHHHHHHHTSTTHHHHEEEEE---
T ss_pred             eec--cCCCceeeeeecccCCceEEEecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHHhCcchhhcccccc---
Confidence            000  012344555669999999999999999999999 99999999999999999999999999999999886554   


Q ss_pred             CccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHHHHHH
Q psy11618        701 LEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLL  780 (1381)
Q Consensus       701 lPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMI  780 (1381)
                      .|+|+..+.+|||||+||+|+++.|.|||+||||||++++ +||||+++|||||+|||||||||||+++++|||+|+|||
T Consensus       489 ~pg~~~~~~~sd~~~~~~~r~~~~t~~H~~GTc~Mg~~~~-~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~ai  567 (583)
T 3qvp_A          489 IPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEM-GGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAM  567 (583)
T ss_dssp             ESGGGSCTTCCHHHHHHHGGGSCEECSCCBCTTCBSCGGG-TCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHHHHHH
T ss_pred             CCCcccccCCCHHHHHHHHHhccCCCcCCCCceeCCCCCC-CceECCCCeEecCCCeEEeecccCCCCCCcCcHHHHHHH
Confidence            3555444457999999999999999999999999998765 699999999999999999999999999999999999999


Q ss_pred             HH
Q psy11618        781 LF  782 (1381)
Q Consensus       781 A~  782 (1381)
                      |-
T Consensus       568 ae  569 (583)
T 3qvp_A          568 AL  569 (583)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=100.00  E-value=1.9e-112  Score=1017.34  Aligned_cols=538  Identities=25%  Similarity=0.338  Sum_probs=432.1

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC---CCccccCCccccccCCcccCcccccccccccccCCCc
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT---PIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNA  235 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~---~~~~~iP~~~~~l~~s~~DW~Y~TePq~~a~~gl~~r  235 (1381)
                      .+++|||||||||+|||++|+||||++++||+|||||++.   .+.+++|..+....++++||+|+|+.+        +|
T Consensus         3 ~~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~~~--------~r   74 (577)
T 3q9t_A            3 DGSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTMV--------RR   74 (577)
T ss_dssp             TTCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEEEE--------EE
T ss_pred             CCCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEEEC--------Cc
Confidence            4567999999999999999999999988999999999973   345678888877788899999998843        34


Q ss_pred             eee------cccccccCccccccceEEecCCccchHHHhhcCCCCCChhhHHHHHHHhcccccCCcc--cCCCCCCCCCC
Q psy11618        236 RIK------ITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYN--ESKAVHGTQGY  307 (1381)
Q Consensus       236 ~i~------~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GWswedLlPYFkKsE~~~~p~~~--~d~~~HG~~GP  307 (1381)
                      .+.      |+|||++||||++|+|+|+||+++|||+|++.|++||+|+++.|||||+|++..+..+  .+..+||.+||
T Consensus        75 ~~~~~~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~Gp  154 (577)
T 3q9t_A           75 DDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGP  154 (577)
T ss_dssp             TTEEEEEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSCS
T ss_pred             cccccccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCCCCCC
Confidence            444      9999999999999999999999999999999999999999999999999999765422  23457999999


Q ss_pred             ccccCCCCC-CCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcE
Q psy11618        308 LPVGLFKNK-ENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSK  386 (1381)
Q Consensus       308 L~Vs~~p~~-e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~  386 (1381)
                      ++++++++. +..|..+.+.++++++|++.++|.|+++ +.|+++.+.++++|+|++++ +|+   + +|+|++|+++|+
T Consensus       155 l~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~-~~G~~~~~~~~~~g~R~s~~-~~l---~-~r~Nl~v~~~a~  228 (577)
T 3q9t_A          155 IPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDGE-MDGLTHCCDTIYRGQRSGSF-LFV---K-NKPNITIVPEVH  228 (577)
T ss_dssp             EEEEECCCCGGGHHHHHHHHHHHHHTTCCBCSCCSSSC-CCEEEECEESEETTEECCGG-GGS---S-SCTTEEEECSEE
T ss_pred             EEeeCCCCCcccchHHHHHHHHHHHcCCCcCCCCCCCC-cCeEEeecceecCCeEeeHH-HHH---h-cCCCeEEEcCcE
Confidence            999987654 2246888999999999999988999988 88999888889999999876 454   4 799999999999


Q ss_pred             EEEEEec-CCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhccccc
Q psy11618        387 VTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNA  464 (1381)
Q Consensus       387 VtRIlfd-~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDHp  464 (1381)
                      |+||++| +++||+||++.+.+|++++++|+|||||||||++|||+||+|||||++||+++||||++|+| ||||+|||+
T Consensus       229 v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~~SGIGp~~~L~~~GI~vv~dlP~VG~nl~DH~  308 (577)
T 3q9t_A          229 SKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHP  308 (577)
T ss_dssp             EEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHTTTCCCSEECTTTTEEEBCCE
T ss_pred             EEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHHHHcCCCCHHHHHHcCCCeeccCchhhhhhhcCc
Confidence            9999998 36799999999855899999999999999999999999999999999999999999999999 999999999


Q ss_pred             cCCceEEEecCCccc-c------chhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCC
Q psy11618        465 QFTGPVMAFSAPLKR-T------VYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGP  537 (1381)
Q Consensus       465 ~v~~vvf~l~~~vs~-s------l~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~  537 (1381)
                      .+ .+.++.+++.+. +      ...+++..+|..+++||++.......                    .+...+.    
T Consensus       309 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gpl~~~~~~~~--------------------~~~~~~~----  363 (577)
T 3q9t_A          309 GV-PFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELV--------------------GFPRIDK----  363 (577)
T ss_dssp             EE-EEEEEECTTSSSHHHHTSCSHHHHHHHHHHHHHSCSGGGCCSEEEE--------------------EECCCHH----
T ss_pred             ce-eEEEEeCCCCccchhhhcchhHHHHHHHHHHhcCCCCcccchhhee--------------------EEeecCh----
Confidence            98 488888765421 0      11245677888888888752110000                    0000000    


Q ss_pred             cccccccchhhhhhHHHHHHHHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhH
Q psy11618        538 VMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEV  617 (1381)
Q Consensus       538 ~~a~~~pl~~tv~s~~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~  617 (1381)
                             .  ... .+...+......+ .            +....+..|++|+++.+...  ..        ...    
T Consensus       364 -------~--~~~-~~~~~~~~~~~~~-~------------~~~~~~~~p~~~~~~~~~~~--~~--------~~~----  406 (577)
T 3q9t_A          364 -------Y--LEK-DAEYRKAKAANGG-K------------DPFSPLGQPHFELDFVCMFG--TA--------FQW----  406 (577)
T ss_dssp             -------H--HTT-CHHHHHHHHHTTT-S------------CSSCTTSCCSEEEEEESSCC--GG--------GCS----
T ss_pred             -------h--hhc-chhhhhhhhcccc-c------------cccCCCCCceEEEEeccccc--cc--------ccc----
Confidence                   0  000 0000011110100 0            00012256888876644211  00        000    


Q ss_pred             HHHHhccCCCCCeEEEEEeecccCcCc-EEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHh-cCHHHHHhccc
Q psy11618        618 QTAYVNLNKRTDMGVISMSLVNPKSCG-KVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLE-QTEAIRLAGGT  695 (1381)
Q Consensus       618 ~~~~~~p~~~~~~~tI~v~Ll~P~SRG-sV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl-~Tp~Lk~~g~~  695 (1381)
                         ......+.+++++.+++++|+||| +|||+|+||.++|.|||||++||.|++.+++|+|.+||++ ++++++++..+
T Consensus       407 ---~~~~~~~~~~~~~~~~l~~P~SrGG~V~L~S~dp~~~P~i~p~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~  483 (577)
T 3q9t_A          407 ---HFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLLFKGEGFKDLVES  483 (577)
T ss_dssp             ---SSCCCSSSEEEEEEEEESSCCSCCEEEECSCSCTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHHHSTTGGGTEEE
T ss_pred             ---cccCCCCCCEEEEEEEeeeccccCCEEEeCCCCCCCCceEecCcCCCccHHHHHHHHHHHHHHHHHhChhhhhcccc
Confidence               001112345788999999999999 9999999999999999999999999999999999999999 99999988776


Q ss_pred             ccccCCccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchH
Q psy11618        696 LMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDA  775 (1381)
Q Consensus       696 e~~~plPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqA  775 (1381)
                      +..   |+   .+.+|||||+||+|++..|.|||+||||||++++ +||||+++|||||+|||||||||||++|++|||+
T Consensus       484 e~~---p~---~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~-~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~a  556 (577)
T 3q9t_A          484 EYP---WE---MPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-QGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQN  556 (577)
T ss_dssp             EES---SC---CCTTCHHHHHHHHHHHCEECSCCBCTTCBCSSTT-TCSBCTTCBBTTCBSEEECSGGGCSSCCSSCCHH
T ss_pred             ccC---CC---CCcCCHHHHHHHHHhccccccccccceecCCCCC-CceECCCCeEeCCCCcEEeecccccCCCCCccHH
Confidence            652   22   3467999999999999999999999999999766 7999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy11618        776 ISFLLLF  782 (1381)
Q Consensus       776 pVyMIA~  782 (1381)
                      |+||||-
T Consensus       557 ~~~~iae  563 (577)
T 3q9t_A          557 SVYAVGE  563 (577)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999985

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=1.1e-103  Score=914.51  Aligned_cols=495  Identities=26%  Similarity=0.363  Sum_probs=407.5

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC-CCccccCCccccccCCcccCcccccccccccccCCCcee
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT-PIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARI  237 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~-~~~~~iP~~~~~l~~s~~DW~Y~TePq~~a~~gl~~r~i  237 (1381)
                      ...+|||||||||+|||++|+||||++++||+|||||+++ ++..+.|..+....++++||+|+++||++    .++|++
T Consensus        14 ~~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~~----~~~~~~   89 (526)
T 3t37_A           14 HAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQAG----TAGRAH   89 (526)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCCGGGGSGGGGGGTTTSTTBCCEECCCBGG----GTTBCC
T ss_pred             CCCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcchhChhhHhhccCCccccCccccccCC----CCCCeE
Confidence            3468999999999999999999999999999999999875 44557788877788889999999999984    688999


Q ss_pred             ecccccccCccccccceEEecCCccchHHHhh-cCCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccccCCCCC
Q psy11618        238 KITAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNK  316 (1381)
Q Consensus       238 ~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~-lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~~  316 (1381)
                      .|+|||++||||+||+|+|.|++++|||.|++ .|+++|+|++++|||+|+|+.....    .+.|+.+||.+++..+..
T Consensus        90 ~~~rG~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~~----~~~~~~~g~~~~~~~~~~  165 (526)
T 3t37_A           90 HWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGG----DGIHGKGGPLPIHLPADE  165 (526)
T ss_dssp             EECCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTTT----SSSSCSSCSEECBCCSTT
T ss_pred             eccCccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCCC----ccccCcCCCcCccccccc
Confidence            99999999999999999999999999999986 5889999999999999999986433    467889999887755432


Q ss_pred             CCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCCC
Q psy11618        317 ENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN  396 (1381)
Q Consensus       317 e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~  396 (1381)
                       .+|..+.+.+++++.|++..+|.|++. +.|.++.+.++++|+|+|++++|+.++...|+|++|+++++|+||.++ ++
T Consensus       166 -~~p~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~~~~g~r~s~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~-~~  242 (526)
T 3t37_A          166 -VSPLARAFIEAGASLGLPRLEGHNSGE-MIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE-GN  242 (526)
T ss_dssp             -SCHHHHHHHHHHHHTTCCBCSSSCSSC-CBSBCCCCBCEETTEECCHHHHHSCHHHHTCTTEEEECSCEEEEEEEE-TT
T ss_pred             -CCHHHHHHHHHHHHcCCCcccCCCCCc-ccccccccccccCCcccccccccccccccCCCCeEEEeCCEEEEEEec-CC
Confidence             478999999999999999888888887 788888888888999999999999765337999999999999999998 78


Q ss_pred             eEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhccccccCCceEEEecC
Q psy11618        397 VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSA  475 (1381)
Q Consensus       397 RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~~vvf~l~~  475 (1381)
                      ||+||++.+ ++++++++| ||||||||||+||||||+|||||+++++++||++++|+| ||+|+|||+......+..++
T Consensus       243 ~a~gv~~~~-~~~~~~~~a-~~VILsAGai~SP~LLl~SGig~~~~l~~~gi~vv~dlp~VG~nl~DH~~~~~~~~~~~~  320 (526)
T 3t37_A          243 QVRSLEVVG-RQGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARK  320 (526)
T ss_dssp             EEEEEEEEE-TTEEEEEEE-EEEEECSHHHHHHHHHHHTTEECHHHHHHHTCCCSEECTTTTCSBBCCEEEEEEEEEESS
T ss_pred             eEEEEEEEe-cCceEEEee-cceEEcccccCCcchhhhccCCchhhhhccCCCeEecCCccccccccccccceeEEeccC
Confidence            999999998 677788888 799999999999999999999999999999999999999 99999999875322333332


Q ss_pred             CccccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccccchhhhhhHHHH
Q psy11618        476 PLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMV  555 (1381)
Q Consensus       476 ~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~tv~s~~~~  555 (1381)
                      +..                   .....               ...                                   
T Consensus       321 ~~~-------------------~~~~~---------------~~~-----------------------------------  331 (526)
T 3t37_A          321 PVP-------------------PSRLQ---------------HSE-----------------------------------  331 (526)
T ss_dssp             CCC-------------------CCSSC---------------SEE-----------------------------------
T ss_pred             Ccc-------------------hHhhc---------------chh-----------------------------------
Confidence            221                   00000               000                                   


Q ss_pred             HHHHHcCCCCCccccccceEEEeecC--CCCCCCCeeeeeeccccccchhhhhhhhccccchhHHHHHhccCCCCCeEEE
Q psy11618        556 FKYLVNRIGPLSNAGLWSFTGYIDTL--QNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVI  633 (1381)
Q Consensus       556 ~eYl~~~sGPLss~g~~e~~gFl~S~--~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~tI  633 (1381)
                                        ...+.+++  .....|+++......+. ..+                  ........+.+++
T Consensus       332 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------------~~~~~~~~~~~~~  374 (526)
T 3t37_A          332 ------------------SMAYMRADSFTAAGQPEIVVGCGVAPI-VSE------------------SFPAPAAGSAYSL  374 (526)
T ss_dssp             ------------------EEEEECSSCSSCCSSCCEEEEEESSCC-CCT------------------TSCCCCTTSEEEE
T ss_pred             ------------------hhhhhhcccccccCCcceeeecccccc-ccc------------------ccccccCCcceee
Confidence                              00000000  01133454433221111 000                  0011123456788


Q ss_pred             EEeecccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccCCccCCCCCCCCch
Q psy11618        634 SMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTH  713 (1381)
Q Consensus       634 ~v~Ll~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~~SDE  713 (1381)
                      ...+++|+|||+|+++|+||.+.|.||+||+++|.|++.+++++|.+|++.++++++++..++.   .|++    .++|+
T Consensus       375 ~~~l~~p~srG~v~~~s~dp~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~~~---~pg~----~~~~~  447 (526)
T 3t37_A          375 LFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWREREL---LPGT----PNSAA  447 (526)
T ss_dssp             EEEESSCCCCBEEECSSSSTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTCGGGTTTEEEEC---SSCC----CCSHH
T ss_pred             eccccCccccCcceeccCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccccc---CCCC----CCCHH
Confidence            8899999999999999999999999999999999999999999999999999999988876654   3443    36899


Q ss_pred             hHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHHHHHHH
Q psy11618        714 SWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLL  781 (1381)
Q Consensus       714 eIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMIA  781 (1381)
                      |+++|+|+++.|.||++||||||+  |++||||+++||||++|||||||||||++|++|||+|+||||
T Consensus       448 ~~~~~ir~~~~t~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nL~VvDaSv~P~~~~~np~~ti~aiA  513 (526)
T 3t37_A          448 EMDDFIARSVITHHHPCGTCRMGK--DPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIA  513 (526)
T ss_dssp             HHHHHHHHHEEECSCCBCTTCBCS--STTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCCHHHHHHHH
T ss_pred             HHHHHHHhcCccCcccCccccCCC--CCCccCCCCCEEcCCCCeEEEEcCcccCCcChHHHHHHHHHH
Confidence            999999999999999999999995  457999999999999999999999999999999999999997

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=100.00  E-value=2e-102  Score=930.33  Aligned_cols=529  Identities=23%  Similarity=0.285  Sum_probs=413.5

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCC--Cccc-cCCccccccCCcccCcccccccccccccCCCce
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP--IHSR-IPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNAR  236 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~--~~~~-iP~~~~~l~~s~~DW~Y~TePq~~a~~gl~~r~  236 (1381)
                      .++|||||||||+|||++|+||+|++++||+++|+|++..  ...+ +|..+....+++++|+|+++|      +.++|+
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p------~~~~~~   95 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP------LINNRT   95 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC------CTTSCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc------CCCCce
Confidence            4679999999999999999999997899999999998653  2334 777665556678999999998      247889


Q ss_pred             eecccccccCccccccceEEecCCccchHHHhhc-CCCCCChhhHHHHHHHhcccccCCc-------ccCCCCCCCCCCc
Q psy11618        237 IKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIY-------NESKAVHGTQGYL  308 (1381)
Q Consensus       237 i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~l-Gn~GWswedLlPYFkKsE~~~~p~~-------~~d~~~HG~~GPL  308 (1381)
                      +.|+|||++||||+||+|+|.|++++|||+|++. |++||+|||++|||+|+|+...+..       ..++++||.+||+
T Consensus        96 ~~~~rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~g~~Gpl  175 (587)
T 1gpe_A           96 NNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTV  175 (587)
T ss_dssp             CEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSE
T ss_pred             eeeeccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCccccCCCCCE
Confidence            9999999999999999999999999999999998 9999999999999999999986521       1246789999999


Q ss_pred             cccCCC-CCCCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCC-CCcccchhhhcchhhhcCCCCeEEEcCcE
Q psy11618        309 PVGLFK-NKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTR-YGLRFSAADAYLTPIAGKRTNLYVLKRSK  386 (1381)
Q Consensus       309 ~Vs~~p-~~e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~-~G~RsSAa~AYL~Pa~~~R~NLtILTnA~  386 (1381)
                      +++++. ....++..+.+.+|++++|++..+|.|+++ +.|++.++.+++ +|+|+|++++|++|++ +|+|++|+++++
T Consensus       176 ~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~-~~G~~~~~~~~~~~g~R~sa~~~~l~~~~-~~~nl~i~~~~~  253 (587)
T 1gpe_A          176 QSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGH-PRGVSMIMNNLDENQVRVDAARAWLLPNY-QRSNLEILTGQM  253 (587)
T ss_dssp             EEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSC-CCEEECCEESBCTTCCBCCHHHHHTTTTT-TCTTEEEEESCE
T ss_pred             EEccCCCcCCCCHHHHHHHHHHHHcCCCcCCCCCCCC-CCEEEecceEECCCCcccCHHHHHHHHhh-cCCCcEEEcCCE
Confidence            998652 112378999999999999999888999988 789888877765 7999999999999887 899999999999


Q ss_pred             EEEEEecC-C--CeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCccchhcccc
Q psy11618        387 VTKVIIND-Q--NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENLKLN  463 (1381)
Q Consensus       387 VtRIlfd~-g--~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLPVGrNLQDH  463 (1381)
                      |+||++|+ +  +||+||++.+.+|++++++|+||||+|||+++|||+||+|||||+++|+++||||++|+|||||+|||
T Consensus       254 v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGIGp~~~L~~~gI~vv~dlPVG~nL~DH  333 (587)
T 1gpe_A          254 VGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQ  333 (587)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECCTTCSBBCC
T ss_pred             EEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCCCCHHHHHhCCCCeEEeCCCCcchhcC
Confidence            99999983 2  59999999955899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCceEEEecCCcccc---chhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCccc
Q psy11618        464 AQFTGPVMAFSAPLKRT---VYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMA  540 (1381)
Q Consensus       464 p~v~~vvf~l~~~vs~s---l~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a  540 (1381)
                      +.. .+.++.+++....   ....+...+|..+++||.+..                                       
T Consensus       334 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~---------------------------------------  373 (587)
T 1gpe_A          334 TTT-TVSSRASSAGAGQGQAVFFANFTETFGDYAPQARDLL---------------------------------------  373 (587)
T ss_dssp             EEE-EEEEEECGGGCSBCEEEEEEEHHHHHGGGHHHHHHHH---------------------------------------
T ss_pred             ccc-ceEEEeCCCcccccchHHHHHHHHHHHhCCCCCcccc---------------------------------------
Confidence            998 4777776432100   000011222222222221100                                       


Q ss_pred             ccccchhhhhhHHHHHHHHHc---CCCCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhH
Q psy11618        541 FSAPLKRTVYSQEMVFKYLVN---RIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEV  617 (1381)
Q Consensus       541 ~~~pl~~tv~s~~~~~eYl~~---~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~  617 (1381)
                                 ..+...|...   ..+   .... +  .        -.|+.+.+..+.          ..  .+...  
T Consensus       374 -----------~~~~~~~~~~~~~~~~---~~~~-~--~--------~~~~~~~~~~~~----------~~--~~~~~--  414 (587)
T 1gpe_A          374 -----------NTKLDQWAEETVARGG---FHNV-T--A--------LKVQYENYRNWL----------LD--EDVAF--  414 (587)
T ss_dssp             -----------HHSHHHHHHHHHHTTS---CSCH-H--H--------HHHHHHHHHHHH----------HH--SCCEE--
T ss_pred             -----------ccceeeEeeccccccc---cccc-c--c--------ccccHHHHhhhc----------cC--CCCcc--
Confidence                       0000001000   000   0000 0  0        001111000000          00  00000  


Q ss_pred             HHHHhccCCCCCeEEEEEeecccCcCcEEEeecCCCCCCc-cccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccc
Q psy11618        618 QTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPP-CIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTL  696 (1381)
Q Consensus       618 ~~~~~~p~~~~~~~tI~v~Ll~P~SRGsV~L~SsDP~d~P-vIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e  696 (1381)
                      . +..  ....+.+++...+++|+|||+|+|+|+||.++| .||+||++||.|++.+++++|.++|++++++++++..++
T Consensus       415 ~-~~~--~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~  491 (587)
T 1gpe_A          415 A-ELF--MDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGE  491 (587)
T ss_dssp             E-EEE--EECTTEEEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHHHHHHHHTSTTHHHHEEEE
T ss_pred             e-eee--ecCCCcEEEEEEecCCccceeEEeCCCCcccCccEeecccCCChHHHHHHHHHHHHHHHHHcCcchhhhcccc
Confidence            0 000  001235778889999999999999999999999 999999999999999999999999999999999987655


Q ss_pred             cccCCccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHH
Q psy11618        697 MSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAI  776 (1381)
Q Consensus       697 ~~~plPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqAp  776 (1381)
                      ..   |+.+..+.+|||+|++|+|+...|.||++||||||++++ +||||+++||||++|||||||||||+++++|||+|
T Consensus       492 ~~---pg~~~~~~~sd~~~~~~ir~~~~t~~H~~GTcrMG~~~~-~sVVD~~lrV~Gv~nLrVvDaSv~P~~~~~Np~~t  567 (587)
T 1gpe_A          492 TL---PGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSREL-GGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTI  567 (587)
T ss_dssp             EE---SGGGSCTTCCHHHHHHHHHHSCEECSCCBCTTCBSCGGG-TCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHH
T ss_pred             cC---CCccccCCCCHHHHHHHHHHhcCcccCccCccccCCCCC-CceECCCCEEECCCCcEEeeeccCCCCCCcchHHH
Confidence            42   332212347999999999999999999999999998754 69999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy11618        777 SFLLLF  782 (1381)
Q Consensus       777 VyMIA~  782 (1381)
                      +||||-
T Consensus       568 i~aiAe  573 (587)
T 1gpe_A          568 FYGMAL  573 (587)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999985

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=100.00  E-value=3e-98  Score=886.53  Aligned_cols=501  Identities=27%  Similarity=0.385  Sum_probs=415.7

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCC--CccccCCccccccCCcccCcccccccccccccCCCcee
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP--IHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARI  237 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~--~~~~iP~~~~~l~~s~~DW~Y~TePq~~a~~gl~~r~i  237 (1381)
                      ..+|||||||||+|||++|+||+|+++.+|+++|+|+...  ...++|..+....+++++|.|.++||++     ++|++
T Consensus        11 ~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~-----~~~~~   85 (546)
T 2jbv_A           11 DREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN-----GNSFM   85 (546)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCSS-----SCTTC
T ss_pred             cCcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccCC-----CCceE
Confidence            3579999999999999999999998899999999998653  3346676554444667899999999873     67889


Q ss_pred             ecccccccCccccccceEEecCCccchHHHhh-cCCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccccCCCCC
Q psy11618        238 KITAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNK  316 (1381)
Q Consensus       238 ~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~-lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~~  316 (1381)
                      .|+|||++||||++|+|+|.|+++.|||.|++ .|++||+|++++|||+|+|+...+..  ++++||.+||+++++++..
T Consensus        86 ~~~rGk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~--~~~~~g~~Gpl~v~~~~~~  163 (546)
T 2jbv_A           86 RHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGP--DAPHHGDSGPVHLMNVPPK  163 (546)
T ss_dssp             EECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBT--TBTTSCBSCSEEEEECCSC
T ss_pred             EeecccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCCC--ccccCCCCCCEEEecCCCC
Confidence            99999999999999999999999999999998 89999999999999999999876321  2568999999999877665


Q ss_pred             CCchHHHHHHHHHHHcCCCCCCCCCCCCC-CcccccCCCCCC-CCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecC
Q psy11618        317 ENNIIREIFETSAQELGYPCPKDMNDRYV-DVGFAELPGMTR-YGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIND  394 (1381)
Q Consensus       317 e~~pl~~~f~eA~eeLG~p~~~D~N~g~~-~~G~s~~~~ti~-~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~  394 (1381)
                        ++..+.+.++++++|++.. |.|+++. +.|++.++.+++ +|+|+|+.++|++++. +|+|++|+++++|+||++++
T Consensus       164 --~~~~~~~~~a~~~~G~~~~-d~n~~~~~~~g~~~~~~~~~~~g~R~s~~~a~l~~a~-~~~~~~i~~~~~V~~i~~~~  239 (546)
T 2jbv_A          164 --DPTGVALLDACEQAGIPRA-KFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIV-EQENFTLLTGLRARQLVFDA  239 (546)
T ss_dssp             --CHHHHHHHHHHHHTTCCBC-CSSSSSCCSSEEEECEECBCTTSBBCCHHHHHTGGGT-TCTTEEEECSCEEEEEEECT
T ss_pred             --CHHHHHHHHHHHHCCCCcc-CCCCCCcCcceEEeeeeecCCCCeEcCHHHHHHHHHh-cCCCcEEEeCCEEEEEEECC
Confidence              8999999999999999988 8876541 457777777777 8999999999999987 78999999999999999983


Q ss_pred             CCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhccccccCCceEEE
Q psy11618        395 QNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMA  472 (1381)
Q Consensus       395 g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~~vvf~  472 (1381)
                      ++||+||++.+. +|++++++|+||||+|||+++|||+||+|||||+++|+++||++++|+| ||||+|||+... +.++
T Consensus       240 ~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGiG~~~~L~~~gi~~~~dlP~VG~nL~dH~~~~-~~~~  318 (546)
T 2jbv_A          240 DRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGV-VQFE  318 (546)
T ss_dssp             TSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEECC-EEEE
T ss_pred             CCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhhcCCCchHHHHhcCCceEeeCcchhhhhhhCccce-EEEE
Confidence            379999999873 2888999998899999999999999999999999999999999999999 999999999884 6666


Q ss_pred             ecCCccccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccccchhhhhhH
Q psy11618        473 FSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQ  552 (1381)
Q Consensus       473 l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~tv~s~  552 (1381)
                      .+++..                  +..                                                     
T Consensus       319 ~~~~~~------------------~~~-----------------------------------------------------  327 (546)
T 2jbv_A          319 AKQPMV------------------AES-----------------------------------------------------  327 (546)
T ss_dssp             ESSCCC------------------SCC-----------------------------------------------------
T ss_pred             ecCCCc------------------ccc-----------------------------------------------------
Confidence            554320                  000                                                     


Q ss_pred             HHHHHHHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhHHHHHhccCCCCCeEE
Q psy11618        553 EMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGV  632 (1381)
Q Consensus       553 ~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~t  632 (1381)
                                +      +..+..+|.++....+.|+++++..+... . ..   . ...+          .+ ...+.++
T Consensus       328 ----------~------~~~~~~~f~~~~~~~~~p~~~~~~~~~~~-~-~~---~-~~~g----------~~-~~~~~~~  374 (546)
T 2jbv_A          328 ----------T------QWWEIGIFTPTEDGLDRPDLMMHYGSVPF-D-MN---T-LRHG----------YP-TTENGFS  374 (546)
T ss_dssp             ----------S------SSCCEEEEECSSTTCSSCSEEEEEESSCC-C-TT---T-GGGT----------CC-CCSSEEE
T ss_pred             ----------c------chhheEEEEecCCCCCCCceEEEeccccc-c-cc---c-cccC----------cc-CCCCeEE
Confidence                      0      00012233333322356777766543221 0 00   0 0000          00 1234577


Q ss_pred             EEEeecccCcCcEEEeecCCCCCCccccCCCCCChh--hHHHHHHHHHHHHHHhcCHHHHHhcccccccCCccCCCCCCC
Q psy11618        633 ISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPE--DLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWR  710 (1381)
Q Consensus       633 I~v~Ll~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~--Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~~  710 (1381)
                      +...+++|+|||+|+|+|+||.++|.||+||++||.  |++.+++++|.++|++++++++++..++.   .|+   .+.+
T Consensus       375 ~~~~~~~P~srG~V~L~s~dp~~~P~I~~~y~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~---~~~~  448 (546)
T 2jbv_A          375 LTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGREL---SPG---VEAQ  448 (546)
T ss_dssp             EEEEETTCCCCBEEECSSSCTTSCCEEECCTTCCTTCHHHHHHHHHHHHHHHHHTSGGGTTTEEEEE---ESC---TTCC
T ss_pred             EEEEEcccCcccEEEecCCCCCCCceecccccCCCchhHHHHHHHHHHHHHHHHcCcchhhcccccc---cCC---CCCC
Confidence            788899999999999999999999999999999999  99999999999999999999888765544   233   3467


Q ss_pred             CchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHHHHHHHH
Q psy11618        711 STHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLLF  782 (1381)
Q Consensus       711 SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMIA~  782 (1381)
                      |||+|++|+|+...|.|||+||||||+++|++||||+++||||++|||||||||||+++++|||+|+||||-
T Consensus       449 sd~~~~~~ir~~~~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAe  520 (546)
T 2jbv_A          449 TDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGE  520 (546)
T ss_dssp             SHHHHHHHHHHHCEECSCCBCTTCBCCTTCTTCSBCTTCBBTTSBSEEECSGGGCSSCCSSCCHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCcccccccccccCCCCCCCceECCCCEEECCCCeEEeecccCCCCCCcchHHHHHHHHH
Confidence            999999999999999999999999998667789999999999999999999999999999999999999985

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=100.00  E-value=1.2e-87  Score=794.40  Aligned_cols=466  Identities=24%  Similarity=0.313  Sum_probs=348.9

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCC--CccccCCccccccCCcccCcccccccccccccCCCcee
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP--IHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARI  237 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~--~~~~iP~~~~~l~~s~~DW~Y~TePq~~a~~gl~~r~i  237 (1381)
                      .++|||||||||+|||++|+||||  ++||+|||||++..  +..+.|..+..... +.+| |+++||+.    .++++.
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse--g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~-~~~~-~~t~~q~~----~~~~~~   95 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQ-QEDD-GKTPVERF----VSEDGI   95 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT--TSCEEEECSSBCGGGSGGGGBGGGHHHHHH-SCCC-SSSSEEEE----ECTTSC
T ss_pred             cCcccEEEECccHHHHHHHHHHhc--CCcEEEEecCCCcCCCcceecchhHhhhcc-CCCc-CcCCCccc----cCCCcc
Confidence            457999999999999999999998  79999999998642  22333332221111 1246 78888874    356778


Q ss_pred             ecccccccCccccccceEEecCCccchHHHhhcCCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccccCCCCCC
Q psy11618        238 KITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKE  317 (1381)
Q Consensus       238 ~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~~e  317 (1381)
                      .++|||++||||+||+|+|.|++++|||++   | .+|+|++++|||+|+|+.....                   +.. 
T Consensus        96 ~~~rg~~lGGsS~in~~~~~R~~~~d~~~~---G-~~W~~~~~~p~~~~~e~~~~~~-------------------~~~-  151 (536)
T 1ju2_A           96 DNVRGRVLGGTSIINAGVYARANTSIYSAS---G-VDWDMDLVNQTYEWVEDTIVYK-------------------PNS-  151 (536)
T ss_dssp             EEEEECBTTGGGGTSCCEECBCCTTSSTTS---S-SCCCHHHHHHHHHHHHHHHCBC-------------------CCC-
T ss_pred             eeecceeccccccccCeEEEeCCHHHHhhc---c-CCCChHHHHHHHHhhhcccCCC-------------------CCC-
Confidence            899999999999999999999999999853   2 2599999999999999864110                   112 


Q ss_pred             CchHHHHHHHHHHHcCCCCCC----CCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEec
Q psy11618        318 NNIIREIFETSAQELGYPCPK----DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN  393 (1381)
Q Consensus       318 ~~pl~~~f~eA~eeLG~p~~~----D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd  393 (1381)
                       .+..+.+.++++++|++...    |.+.+. +.|.+..   .++|+|+++++ |+++ + +|+|++|+++++|+||++|
T Consensus       152 -~~~~~~~~~a~~~~G~~~~~~~~~~~~~g~-~~g~~~~---~~~g~r~s~~~-~~~~-~-~~~~~~v~~~~~v~~i~~~  223 (536)
T 1ju2_A          152 -QSWQSVTKTAFLEAGVHPNHGFSLDHEEGT-RITGSTF---DNKGTRHAADE-LLNK-G-NSNNLRVGVHASVEKIIFS  223 (536)
T ss_dssp             -CHHHHHHHHHHHHTTCCCEEEECCBCCSEE-EECEESB---CTTSBBCCGGG-GGGG-S-CTTTEEEEESCEEEEEEEC
T ss_pred             -CcHHHHHHHHHHHcCCCCCCCcccCCCCCc-eeeeEEE---CCCCeEecHHH-hhhh-h-cCCCcEEEeCCEEEEEEEC
Confidence             57788999999999985321    111222 2232221   25899999887 7755 4 6899999999999999998


Q ss_pred             CC--CeEEEEEEEecCCeEEEEe--cCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhccccccCCc
Q psy11618        394 DQ--NVATGVEYVNSKGETVRVT--ANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFTG  468 (1381)
Q Consensus       394 ~g--~RAtGVE~vd~~Gr~~tV~--ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~~  468 (1381)
                      ++  +||+||++.+.+|++++++  |+||||+|||+++|||+||+|||||+++|+++||++++|+| ||||+|||+.. .
T Consensus       224 ~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGig~~~~l~~~gi~~~~dlP~VG~NL~DH~~~-~  302 (536)
T 1ju2_A          224 NAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRN-F  302 (536)
T ss_dssp             CSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTEEEECCEEE-E
T ss_pred             CCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHHcCCCCHHHHHhcCCceEecCcccccchhcCcce-e
Confidence            42  5999999997567776665  77999999999999999999999999999999999999999 99999999987 3


Q ss_pred             eEEEecCCccccchhhHHHHHHhhccCCCCCCccccccccccccccccccccccccccccccccccCCCcccccccchhh
Q psy11618        469 PVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRT  548 (1381)
Q Consensus       469 vvf~l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~t  548 (1381)
                      +.++.+++..                .+..+    .               ..        .    .             
T Consensus       303 ~~~~~~~~~~----------------~~~~~----~---------------~~--------~----~-------------  322 (536)
T 1ju2_A          303 INILPPNPIE----------------PTIVT----V---------------LG--------I----S-------------  322 (536)
T ss_dssp             EEECCSSCCC----------------CCCCC----E---------------EE--------E----C-------------
T ss_pred             EEEEeCCCcc----------------cccch----h---------------hh--------H----H-------------
Confidence            6655543321                00000    0               00        0    0             


Q ss_pred             hhhHHHHHHHHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhHHHHHhccCCCC
Q psy11618        549 VYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRT  628 (1381)
Q Consensus       549 v~s~~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~  628 (1381)
                             .+|...++|+++..                .+...  ..+..  .                      .+.++.
T Consensus       323 -------~~~~~~~~g~~~~~----------------~~~~~--~~~~~--~----------------------~~~~~~  353 (536)
T 1ju2_A          323 -------NDFYQCSFSSLPFT----------------TPPFG--FFPSS--S----------------------YPLPNS  353 (536)
T ss_dssp             -------SSEEEEEEEECCCS----------------SCCBT--TBSSS--C----------------------CCCCSS
T ss_pred             -------HHHHHcCCCCCCCC----------------hhhhe--eecCc--c----------------------cCCCCc
Confidence                   00111111221110                00000  00000  0                      000111


Q ss_pred             CeEEEEEeecccCcCcEEEe-ecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccCCccCCC-
Q psy11618        629 DMGVISMSLVNPKSCGKVTL-KSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQ-  706 (1381)
Q Consensus       629 ~~~tI~v~Ll~P~SRGsV~L-~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~-  706 (1381)
                      .+..+...+++|+|||+|+| +|+||.++|.||+||++||.|++.+++|+|.++|++++++++++..++. .+.|++.. 
T Consensus       354 ~~~~~~~~l~~P~SrG~V~L~~s~Dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~p~~~~~  432 (536)
T 1ju2_A          354 TFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDL-PGVEGFNIL  432 (536)
T ss_dssp             CEEEEEEEESSCSCCEEEECSCSSCTTSCCEECCCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGGCSSCC-STTCSCCBS
T ss_pred             ceEEEeeecCCCCcceEEEeCCCCCcccCceecccccCCccHHHHHHHHHHHHHHHHcCccchhhhcccc-ccCCCcccc
Confidence            23445667889999999999 9999999999999999999999999999999999999999998876543 11232210 


Q ss_pred             -----CCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCCCCCCCchHHHHHHH
Q psy11618        707 -----YPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLLL  781 (1381)
Q Consensus       707 -----~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPtiPSgNpqApVyMIA  781 (1381)
                           ...++||+|++|+|++..|.|||+||||||      +|||+++||||++|||||||||||++|++|||+|+||||
T Consensus       433 ~~~~p~~~~~d~~~~~~ir~~~~t~~H~~GTcrMG------~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~t~~aiA  506 (536)
T 1ju2_A          433 GIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLG  506 (536)
T ss_dssp             SSCCCSCTTCHHHHHHHHHHHCEECSCCEESSCBT------TTBCTTSBBTTCBTEEECSGGGCSSCSSSSCHHHHHHHH
T ss_pred             ccCCCcccCCHHHHHHHHHhccCccccCcCccCCc------cEECCCCeEcCCCCeEEeecccCCCCCCcchHHHHHHHH
Confidence                 124689999999999999999999999999      699999999999999999999999999999999999999


Q ss_pred             H
Q psy11618        782 F  782 (1381)
Q Consensus       782 ~  782 (1381)
                      -
T Consensus       507 e  507 (536)
T 1ju2_A          507 R  507 (536)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=100.00  E-value=1.9e-82  Score=746.83  Aligned_cols=497  Identities=21%  Similarity=0.262  Sum_probs=357.2

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCcc--cc-CCccccccCCcccC------cccccccccccc
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHS--RI-PGMSSVLSLSEFDH------AYLAEPSQFAGL  230 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~~--~i-P~~~~~l~~s~~DW------~Y~TePq~~a~~  230 (1381)
                      .++|||||||||+|||++|+||||+ +.||+++|||++.....  +. +.+........+++      .+. .+++.   
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~---   79 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFT-DSNPF---   79 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGT-CSCCT---
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCCCCcccccccccccccccccceeeccchhHHHhhc-CCCcc---
Confidence            4579999999999999999999996 89999999998643211  11 10000000000110      000 11100   


Q ss_pred             cCCCceeecccccccCccccccceEEecCCccchHH---HhhcCCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCC
Q psy11618        231 GVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYEN---FAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGY  307 (1381)
Q Consensus       231 gl~~r~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~---Wa~lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GP  307 (1381)
                       ...+...++|||++||||++|+|+|.|+++.|||+   |    +++|+|++  |||+|+|+..+.     ...|+.+|+
T Consensus        80 -~~~~~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W----~~~w~~~~--p~~~k~e~~~~~-----~~~~~~~g~  147 (546)
T 1kdg_A           80 -WWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGW----PSSWTNHA--PYTSKLSSRLPS-----TDHPSTDGQ  147 (546)
T ss_dssp             -TBCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTC----CGGGSCCH--HHHHHHHHHSCC-----BSCCSTTSC
T ss_pred             -ccccccccccceeecccccccceEEecCChHHhcCcccC----ccccCccc--HHHHHHHhcCCC-----CccCCCCCC
Confidence             11223567999999999999999999999999998   9    37899999  999999986532     123444453


Q ss_pred             ccccCCCCCCCchHHHHHHHHHHHcCCCCCC---CCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcC
Q psy11618        308 LPVGLFKNKENNIIREIFETSAQELGYPCPK---DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKR  384 (1381)
Q Consensus       308 L~Vs~~p~~e~~pl~~~f~eA~eeLG~p~~~---D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTn  384 (1381)
                      .      +.  ++..+.+.++++++|++..+   +.+. + +.|++..+.++++|+|+|++++|++++. +|+|++|+++
T Consensus       148 ~------~~--~~~~~~~~~a~~~~G~~~~~~~~~~~~-~-~~g~~~~~~~~~~g~R~s~~~~~l~~~~-~~~~~~i~~~  216 (546)
T 1kdg_A          148 R------YL--EQSFNVVSQLLKGQGYNQATINDNPNY-K-DHVFGYSAFDFLNGKRAGPVATYLQTAL-ARPNFTFKTN  216 (546)
T ss_dssp             C------CS--CHHHHHHHHHHHTTTCEECCGGGSTTC-C-TTEEEECCBCEETTEECHHHHTHHHHHH-TCTTEEEECS
T ss_pred             c------cC--CHHHHHHHHHHHHCCCCcCCccCCcCC-C-CcEEeeeeeccCCCcccCHHHHHHHHHh-hCCCcEEEeC
Confidence            2      33  57778899999999997653   2222 2 4577777778889999999999999988 7899999999


Q ss_pred             cEEEEEEecCCCeEEEEEEEec-CCe--EEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccC------CCCcc----
Q psy11618        385 SKVTKVIINDQNVATGVEYVNS-KGE--TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEV------KIPVK----  451 (1381)
Q Consensus       385 A~VtRIlfd~g~RAtGVE~vd~-~Gr--~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~l------GIpVV----  451 (1381)
                      ++|+||+++ ++||+||++.+. +|+  +.+++++||||+|||+++|||+||+|||||++||+++      ||+++    
T Consensus       217 ~~V~~i~~~-~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig~~~~L~~~gn~s~~GI~v~~~~~  295 (546)
T 1kdg_A          217 VMVSNVVRN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQ  295 (546)
T ss_dssp             CCEEEEEEE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGG
T ss_pred             CEEEEEEEe-CCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCCcHHHHHHhhccccCCcccccccc
Confidence            999999998 679999999773 464  4467777999999999999999999999999999999      69985    


Q ss_pred             -cCCccchhccccccCCceEEEecCCccccchhhHHHHHHhhccCCCCCCcccccccccccccccccccccccccccccc
Q psy11618        452 -QDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPVKQDLRVGENLKL  530 (1381)
Q Consensus       452 -vDLPVGrNLQDHp~v~~vvf~l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~~~~l~vg~~~~~  530 (1381)
                       +|+|||||+|||+... +.++ +++.. +..                             +.      .          
T Consensus       296 ~~dlpVG~nL~DH~~~~-~~~~-~~~~~-~~~-----------------------------~~------~----------  327 (546)
T 1kdg_A          296 WINLPVGMNAQDNPSIN-LVFT-HPSID-AYE-----------------------------NW------A----------  327 (546)
T ss_dssp             CBCCCTTTTBBCCCCEE-EEEE-CTTCC-CGG-----------------------------GG------T----------
T ss_pred             cccCCcccCcccCccee-EEEe-cCCcc-ccc-----------------------------ch------h----------
Confidence             8999999999999883 6665 22110 000                             00      0          


Q ss_pred             ccccCCCcccccccchhhhhhHHHHHHHHHcCCCCCccccccceEEEeecCCCCCC--CCeeeeeeccccccchhhhhhh
Q psy11618        531 NAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTAR--PDLEIHLLYFQQNDIRNMCKIK  608 (1381)
Q Consensus       531 ~~~~a~~~~a~~~pl~~tv~s~~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~--PDIq~~~~p~s~~~~d~~~~vk  608 (1381)
                       +.       +..+      ......+|..+++|+++.... + .++.++....+.  ++++....+...  .       
T Consensus       328 -~~-------~~~~------~~~~~~~~~~~~~g~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------  382 (546)
T 1kdg_A          328 -DV-------WSNP------RPADAAQYLANQSGVFAGASP-K-LNFWRAYSGSDGFTRYAQGTVRPGAA--S-------  382 (546)
T ss_dssp             -TT-------TTSC------CHHHHHHHHHHSCSGGGSCSC-C-EEEEEEEECTTSCEEEEEEEEEESCS--C-------
T ss_pred             -hh-------hcch------hHHHHHHHHHcCCcccccCCc-c-eEEEEccCCCCcchhhhhheeccccc--c-------
Confidence             00       0000      022345676677888765321 1 234432211111  122221111100  0       


Q ss_pred             hccccchhHHHHHhccCCCCCeEEEEEeeccc-CcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCH
Q psy11618        609 RAYDFNDEVQTAYVNLNKRTDMGVISMSLVNP-KSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTE  687 (1381)
Q Consensus       609 ~~~g~~~~~~~~~~~p~~~~~~~tI~v~Ll~P-~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp  687 (1381)
                       ..+         ..+....+.+++.+.+++| +|||+|+|+|+|  ++|.|++||++||.|++.+++++|.++++++++
T Consensus       383 -~~~---------~~~~~~~~~~~~~~~~~~p~~srG~v~L~s~~--~~~~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~  450 (546)
T 1kdg_A          383 -VNS---------SLPYNASQIFTITVYLSTGIQSRGRIGIDAAL--RGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSI  450 (546)
T ss_dssp             -CCC---------SSCCCGGGEEEEEEEECTTCCCCBEEEECTTC--CEEEEECCTTCSHHHHHHHHHHHHHHTTTGGGS
T ss_pred             -ccc---------ccccCCCCeEEEEeeecCCCCCCceEecCCCC--CCCcccccccCCchHHHHHHHHHHHHHHHhcCC
Confidence             000         0011123467888889999 999999999998  667899999999999999999999999998765


Q ss_pred             HHHHhcccccccCCccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCcEEecccCCCC
Q psy11618        688 AIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPN  767 (1381)
Q Consensus       688 ~Lk~~g~~e~~~plPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNLRVVDASVfPt  767 (1381)
                      +     ..++  ..|++    .++||++++++|++..|.|||+||||||+++ ++||||+++||||++|||||||||||+
T Consensus       451 ~-----~~~~--~~p~~----~~~~~~~~~~~~~~~~t~~H~~GTcrMG~~~-~~~VVD~~lrV~Gv~nLrVvDaSv~P~  518 (546)
T 1kdg_A          451 P-----GLTM--ITPDV----TQTLEEYVDAYDPATMNSNHWVSSTTIGSSP-QSAVVDSNVKVFGTNNLFIVDAGIIPH  518 (546)
T ss_dssp             T-----TCEE--EESCT----TSCHHHHHHHSCGGGGCCSCCBCTTCBCSCT-TTCSBCTTCBBTTCSSEEECSGGGCSS
T ss_pred             C-----cccc--cCCCC----CCCHHHHHHHHHHhcCcccccccceecCCCC-CCeeECCCCeEccCCCcEEeEecccCC
Confidence            3     1111  12331    3578999999999999999999999999864 579999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHH
Q psy11618        768 AIITQSDAISFLLLF  782 (1381)
Q Consensus       768 iPSgNpqApVyMIA~  782 (1381)
                      ++++|||+|+||||-
T Consensus       519 ~~~~np~~ti~aiAe  533 (546)
T 1kdg_A          519 LPTGNPQGTLMSAAE  533 (546)
T ss_dssp             CCSSCSHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHH
Confidence            999999999999985

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=100.00  E-value=1.4e-76  Score=693.74  Aligned_cols=446  Identities=16%  Similarity=0.165  Sum_probs=324.8

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCC---CccccCCccccccCCcccCcccccccc----------
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP---IHSRIPGMSSVLSLSEFDHAYLAEPSQ----------  226 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~---~~~~iP~~~~~l~~s~~DW~Y~TePq~----------  226 (1381)
                      .++||+||||||+||+++|.||+| +++||+++|+|++..   ...+.|... ...+++++|+|+++||+          
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~-~~~~v~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~t~p~~~~~~l~~~~~   80 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGM-LNPDKRSSWFKNRTEAPLGSFLWLDVV   80 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCCCCCCCTTSSSSCCT-TSCCGGGSBSCSBCCCCTTCHHHHGGG
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCCCCCCCCcccccccc-cccCccccccccccccccccccccccc
Confidence            357999999999999999999998 599999999998532   222333221 11234589999999872          


Q ss_pred             ----ccccc----CCCceeecccccccCccccccceEEecCCccchHHHhhcCCCCCChhhHH-HHHHHhcccccCCccc
Q psy11618        227 ----FAGLG----VRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL-KYFVKSEDYRSVIYNE  297 (1381)
Q Consensus       227 ----~a~~g----l~~r~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GWswedLl-PYFkKsE~~~~p~~~~  297 (1381)
                          ..+.+    .+++++.|+|||++||||+||+|+|.|++++|||+|+    ++|+|+|++ |||+|+|+...+....
T Consensus        81 ~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~----~~w~~~~l~~pyy~~~E~~~~~~~~~  156 (504)
T 1n4w_A           81 NRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEIL----PRVDSSEMYDRYFPRANSMLRVNHID  156 (504)
T ss_dssp             CCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTCBCCC
T ss_pred             cccccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhc----cccchhhhhhHHHHHHHHHhCCCCCC
Confidence                11221    1678899999999999999999999999999999997    689999999 9999999986443211


Q ss_pred             CCCCCCCCCCccccCCCCCCCchHHHHHHHHHHHcCC-----CCCCCCCCCCCCccc---------ccCCCCCCCCcccc
Q psy11618        298 SKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGY-----PCPKDMNDRYVDVGF---------AELPGMTRYGLRFS  363 (1381)
Q Consensus       298 d~~~HG~~GPL~Vs~~p~~e~~pl~~~f~eA~eeLG~-----p~~~D~N~g~~~~G~---------s~~~~ti~~G~RsS  363 (1381)
                       .++| .++|        .  .|..+.+.++++++|+     |.+.|.|+++ +.|.         +.+...+++| |++
T Consensus       157 -~~~~-~~~~--------~--~p~~~~~~~a~~~~G~~~~~~p~~~d~n~~~-~~g~g~~~~~~~~G~c~~g~~~g-r~s  222 (504)
T 1n4w_A          157 -TKWF-EDTE--------W--YKFARVSREQAGKAGLGTVFVPNVYDFGYMQ-REAAGEVPKSALATEVIYGNNHG-KQS  222 (504)
T ss_dssp             -HHHH-HHCG--------G--GHHHHHHHHHHHHTTCCEEECCBSBCHHHHH-HHHTTSSCCSGGGTCSTTCCSSS-BCC
T ss_pred             -cccc-cCCC--------c--chHHHHHHHHHHHcCCCCccCCcccccCccc-cccCccccCCcccccccccCCCC-ccC
Confidence             1112 1111        1  5788999999999999     6665665432 2222         2222345789 999


Q ss_pred             hhhhcchhhhcCCCCeEEEcCcEEEEEEecC-CCeEEEEEEEecCC---eEEEEecCcEEEEcCCchhhHHHHHHcC-CC
Q psy11618        364 AADAYLTPIAGKRTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKG---ETVRVTANKEVILTAGAIANAQLLLLSG-IG  438 (1381)
Q Consensus       364 Aa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~-g~RAtGVE~vd~~G---r~~tV~ArKEVILSAGAI~SPqLLmlSG-IG  438 (1381)
                      +.++|++++. +|+|++|+++++|+||++|+ ++||+||++.+++|   ++++++|+ |||+|||+++|||+||+|| ||
T Consensus       223 ~~~~~l~~a~-~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~-~VIlaaG~~~s~~lL~~Sg~ig  300 (504)
T 1n4w_A          223 LDKTYLAAAL-GTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCR-YLFLGAGSLGSTELLVRARDTG  300 (504)
T ss_dssp             TTTTHHHHHH-HTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEE-EEEECSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHH-hcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeC-EEEEccCCCCCHHHHHhccccC
Confidence            9999999887 78999999999999999984 45999999986566   67889995 9999999999999999999 98


Q ss_pred             CCCccccCCCCcccCCccchhccccccCCceEEEecCCccccchhhHHHHHHhhccCCCCCCcccccccccccccccccc
Q psy11618        439 PKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIPV  518 (1381)
Q Consensus       439 Pkd~Le~lGIpVVvDLPVGrNLQDHp~v~~vvf~l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~~  518 (1381)
                              |||++.| .||||+|||+... +.+.. .+.               +.+|+.+                   
T Consensus       301 --------~i~~~~~-~VG~nl~dh~~~~-~~~~~-~~~---------------~~~~~~~-------------------  335 (504)
T 1n4w_A          301 --------TLPNLNS-EVGAGWGPNGNIM-TARAN-HMW---------------NPTGAHQ-------------------  335 (504)
T ss_dssp             --------SSTTCCT-TTTCCBBCTTCEE-EEEEC-CTT---------------CCCCSCC-------------------
T ss_pred             --------CCCCCCh-hhccccccCCcce-eeecc-CCC---------------CcccCcC-------------------
Confidence                    7998876 6999999999763 33221 110               0011110                   


Q ss_pred             ccccccccccccccccCCCcccccccchhhhhhHHHHHHHHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeecccc
Q psy11618        519 KQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQ  598 (1381)
Q Consensus       519 ~~~l~vg~~~~~~~~~a~~~~a~~~pl~~tv~s~~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~  598 (1381)
                                                                   |.      .+..++.+.. ..+.|+.+....   .
T Consensus       336 ---------------------------------------------~~------~~~~~~~~~~-~~~~~~~~~~~~---~  360 (504)
T 1n4w_A          336 ---------------------------------------------SS------IPALGIDAWD-NSDSSVFAEIAP---M  360 (504)
T ss_dssp             ---------------------------------------------CS------SCCEEEEECC-SSTTCEEEEEEC---C
T ss_pred             ---------------------------------------------CC------ccEEEEeccC-CCCCceEEEecc---C
Confidence                                                         00      0001111111 012244332210   0


Q ss_pred             ccchhhhhhhhccccchhHHHHHhccCCCCCeEEEEEeecccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHH
Q psy11618        599 NDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTD  678 (1381)
Q Consensus       599 ~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~tI~v~Ll~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR  678 (1381)
                                     .+.        .  .+.++....+++|+|||+|+|+|+||    .|++||.+|| | +.+++++|
T Consensus       361 ---------------~~~--------~--~~~~~~~~~~~~p~srG~V~L~s~~~----~i~~~~~~~~-D-~~~~~~~~  409 (504)
T 1n4w_A          361 ---------------PAG--------L--ETWVSLYLAITKNPQRGTFVYDAATD----RAKLNWTRDQ-N-APAVNAAK  409 (504)
T ss_dssp             ---------------CCS--------S--CCCEEEEEEEECCCCCBCEEEETTTT----EEEECCCGGG-G-HHHHHHHH
T ss_pred             ---------------ChH--------H--HhhhhhheeeeccCCCcEEEecCCCC----ceEeccCCCc-C-HHHHHHHH
Confidence                           000        0  02356667788999999999999886    5899999999 9 88999999


Q ss_pred             -HHHHHhcCHHHHHhcccccccCCccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCCc
Q psy11618        679 -YITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGL  757 (1381)
Q Consensus       679 -~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdNL  757 (1381)
                       .++++.++++.       .    ++.+  .+ .++ ++++   ...+.+|++||||||      +|||+++||||++||
T Consensus       410 ~~~~~i~~~~~~-------~----~~~~--~~-~~~-~~~~---~~~~~~H~~GTcrMG------~VVD~~~rV~Gv~nL  465 (504)
T 1n4w_A          410 ALFDRINKANGT-------I----YRYD--LF-GTQ-LKAF---ADDFCYHPLGGCVLG------KATDDYGRVAGYKNL  465 (504)
T ss_dssp             HHHHHHHHHHTC-------C----BCCS--SS-SSS-CCSE---ECSEESSCBCSSCTT------TTBCTTSBBTTCSSE
T ss_pred             HHHHHHHhccCC-------C----cCCc--hh-hhh-hhhh---ccCccccccCCceee------eEECCCCeEeccCCe
Confidence             88888766431       1    1111  01 111 1111   568899999999999      799999999999999


Q ss_pred             EEecccCCCCCCCCCchHHHHHHHH
Q psy11618        758 RVADISVLPNAIITQSDAISFLLLF  782 (1381)
Q Consensus       758 RVVDASVfPtiPSgNpqApVyMIA~  782 (1381)
                      |||||||||+++++|||+|+||||-
T Consensus       466 rVvDaSv~P~~~~~np~~ti~aiAe  490 (504)
T 1n4w_A          466 YVTDGSLIPGSVGVNPFVTITALAE  490 (504)
T ss_dssp             EECSGGGSCSCCSSCSHHHHHHHHH
T ss_pred             EEeeccccCCCCCcChHHHHHHHHH
Confidence            9999999999999999999999985

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=100.00  E-value=2.6e-74  Score=675.63  Aligned_cols=446  Identities=18%  Similarity=0.194  Sum_probs=320.3

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCccccCC---ccccc-cCCcccCcccccccccc------
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPG---MSSVL-SLSEFDHAYLAEPSQFA------  228 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~~~iP~---~~~~l-~~s~~DW~Y~TePq~~a------  228 (1381)
                      ..++||+||||||+||+++|.||+| +++||+++|+|++.+.  +.|.   +.... .+++++|.|+++||++.      
T Consensus         8 ~~~~~d~~iiG~G~~g~~~a~~l~~-~~~~v~~~e~~~~~~~--~~p~~~~~~~~~~~~~~~~w~~~~~pq~~~~~~~~~   84 (507)
T 1coy_A            8 DGDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDT--PGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFG   84 (507)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCSCS--CCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHH-CCCcEEEEECCCCCCC--CCCccccccccccccccccccccccccccccccccc
Confidence            4467999999999999999999998 5999999999986432  2332   21112 23468999999998220      


Q ss_pred             -----cccC------CCceeecccccccCccccccceEEecCCccchHHHhhcCCCCCChhhHH-HHHHHhcccccCCcc
Q psy11618        229 -----GLGV------RNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETL-KYFVKSEDYRSVIYN  296 (1381)
Q Consensus       229 -----~~gl------~~r~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GWswedLl-PYFkKsE~~~~p~~~  296 (1381)
                           +...      +++.+.|+|||++||||+||+|+|.|++++|||+|+    ++|+|+|++ |||+|+|+...+...
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~----~~w~~~~l~~pyy~~~E~~~~~~~~  160 (507)
T 1coy_A           85 INKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL----PSVDSNEMYNKYFPRANTGLGVNNI  160 (507)
T ss_dssp             CCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTCBCC
T ss_pred             cccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhC----CccchhcchhHHHHHHHHHhCCCCC
Confidence                 1122      678899999999999999999999999999999997    589999999 999999998754321


Q ss_pred             cCCCCCCCCCCccccCCCCCCCchHHHHHHHHHHHcCC-----CCCCCCCCCCCCcccccCC---------CCCCCCccc
Q psy11618        297 ESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGY-----PCPKDMNDRYVDVGFAELP---------GMTRYGLRF  362 (1381)
Q Consensus       297 ~d~~~HG~~GPL~Vs~~p~~e~~pl~~~f~eA~eeLG~-----p~~~D~N~g~~~~G~s~~~---------~ti~~G~Rs  362 (1381)
                      .        +...   ++. +.+|..+.+.+|++++|+     |.+.|.|+++ +.|++..+         ..+++| |+
T Consensus       161 ~--------~~~~---~~~-~~~~~~~~~~~a~~~~G~~~~~~p~~~d~n~~~-~~g~~~~~~~~~~g~C~~gc~~g-R~  226 (507)
T 1coy_A          161 D--------QAWF---EST-EWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMK-KEAAGQVTKSGLGGEVIYGNNAG-KK  226 (507)
T ss_dssp             C--------HHHH---HHC-GGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHH-HHHTTCSCCSTTTTCSTTCCSSS-BC
T ss_pred             C--------Cccc---ccc-ccchHHHHHHHHHHHcCCCCccCCcccccCccc-ccCCCcccCccccccccccCCCC-Cc
Confidence            0        0000   001 015788999999999999     6665665433 22322222         235789 99


Q ss_pred             chhhhcchhhhcCCCCeEEEcCcEEEEEEecC-CCeEEEEEEEecCC---eEEEEecCcEEEEcCCchhhHHHHHHcC-C
Q psy11618        363 SAADAYLTPIAGKRTNLYVLKRSKVTKVIIND-QNVATGVEYVNSKG---ETVRVTANKEVILTAGAIANAQLLLLSG-I  437 (1381)
Q Consensus       363 SAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~-g~RAtGVE~vd~~G---r~~tV~ArKEVILSAGAI~SPqLLmlSG-I  437 (1381)
                      |+.++|+++++ +|+|++|+++++|+||++|+ ++||+||++.+.+|   ++++++|+ |||+|||+++|||+||+|| |
T Consensus       227 s~~~~~l~~a~-~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~-~VIlaaGa~~sp~lL~~Sg~i  304 (507)
T 1coy_A          227 SLDKTYLAQAA-ATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTAD-RVFFAAGSVGTSKLLVSMKAQ  304 (507)
T ss_dssp             CTTTTHHHHHH-HTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEE-EEEECSHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHH-hcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeC-EEEEccCccCCHHHHHhcccC
Confidence            99999999987 78999999999999999984 34899999987455   47889995 9999999999999999999 9


Q ss_pred             CCCCccccCCCCcccCCccchhccccccCCceEEEecCCccccchhhHHHHHHhhccCCCCCCccccccccccccccccc
Q psy11618        438 GPKAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKIP  517 (1381)
Q Consensus       438 GPkd~Le~lGIpVVvDLPVGrNLQDHp~v~~vvf~l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~~  517 (1381)
                      |        ++|+..| .||+|+|||+... ....   ..           .|  +++|+.+.                 
T Consensus       305 G--------~lpnl~d-~VG~~l~~h~~~~-~~~~---~~-----------~~--~~~~~~~~-----------------  341 (507)
T 1coy_A          305 G--------HLPNLSS-QVGEGWGNNGNIM-VGRA---NH-----------MW--DATGSKQA-----------------  341 (507)
T ss_dssp             T--------SSTTSCT-TTTCCBBCTTEEE-EEEE---CC-----------TT--SCCCSCCC-----------------
T ss_pred             C--------CCCccCh-hhCCccccCCccc-cccc---cc-----------cc--ccccccCC-----------------
Confidence            8        3564444 5999999998642 2110   00           00  11222110                 


Q ss_pred             cccccccccccccccccCCCcccccccchhhhhhHHHHHHHHHcCCCCCccccccceEEEeecCCCCCCCCeeeeeeccc
Q psy11618        518 VKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQ  597 (1381)
Q Consensus       518 ~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~tv~s~~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s  597 (1381)
                                                                     +...      .+..... ..+.|+.+... +  
T Consensus       342 -----------------------------------------------~~~~------~~~~~~~-~~~~~~~~~~~-~--  364 (507)
T 1coy_A          342 -----------------------------------------------TIPT------MGIDNWA-DPTAPIFAEIA-P--  364 (507)
T ss_dssp             -----------------------------------------------SSCC------EEEECTT-CTTSCEEEEEE-C--
T ss_pred             -----------------------------------------------Ccce------EEEeccC-CCCCCcEEEec-c--
Confidence                                                           0000      0000000 01123333221 0  


Q ss_pred             cccchhhhhhhhccccchhHHHHHhccCCCCCeEEEEEeecccCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHH
Q psy11618        598 QNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGT  677 (1381)
Q Consensus       598 ~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~tI~v~Ll~P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGV  677 (1381)
                      . ..          +         .     .+..+....+++|.|||+|+++|+||    .|++||++|| | +.+++++
T Consensus       365 ~-~~----------~---------~-----~~~~~~~~~~~~p~s~G~V~L~s~~~----~i~~~~~~~~-D-~~~~~~~  413 (507)
T 1coy_A          365 L-PA----------G---------L-----ETYVSLYLAITKNPERARFQFNSGTG----KVDLTWAQSQ-N-QKGIDMA  413 (507)
T ss_dssp             C-CC----------S---------S-----CCCEEEEEEEECCCCCBCEEEETTTT----EEEECCCGGG-G-HHHHHHH
T ss_pred             C-CH----------H---------H-----hhheeeeEEEeeeCCCcEEEEccCCC----ceeeccCCCC-c-HHHHHHH
Confidence            0 00          0         0     02345566778999999999999877    8999999999 9 6789999


Q ss_pred             H-HHHHHhcCHHHHHhcccccccCCccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCcccCCCCeEeCcCC
Q psy11618        678 D-YITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKG  756 (1381)
Q Consensus       678 R-~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVVDs~LRVhGVdN  756 (1381)
                      | .++|+.++++     . ..  +.+     .+++||  ++|   ...+.+|++||||||      +|||+++||||++|
T Consensus       414 ~~~~~~i~~~~~-----~-~~--~~~-----~~~~d~--~~~---~~~~~~H~~GTcrMG------~VVD~~~rV~Gv~n  469 (507)
T 1coy_A          414 KKVFDKINQKEG-----T-IY--RTD-----LFGVYY--KTW---GDDFTYHPLGGVLLN------KATDNFGRLPEYPG  469 (507)
T ss_dssp             HHHHHHHHHHHT-----C-CB--CSS-----CC--CC--CSS---BCSEESCCBCSSCTT------TTSCTTSBCTTSTT
T ss_pred             HHHHHHHHhhcC-----C-cc--cCc-----ccccch--hhh---cccccccccCCcchh------heECCCCeEeccCC
Confidence            9 8898876543     1 11  111     123443  333   568899999999999      49999999999999


Q ss_pred             cEEecccCCCCCCCCCchHHHHHHHH
Q psy11618        757 LRVADISVLPNAIITQSDAISFLLLF  782 (1381)
Q Consensus       757 LRVVDASVfPtiPSgNpqApVyMIA~  782 (1381)
                      ||||||||||+++++||++|+||+|-
T Consensus       470 LrVvDaSv~P~~~~~Np~~ti~alAe  495 (507)
T 1coy_A          470 LYVVDGSLVPGNVGVNPFVTITALAE  495 (507)
T ss_dssp             EEECSGGGSCSCCSSCSHHHHHHHHH
T ss_pred             eEEeechhccCCCCcChHHHHHHHHH
Confidence            99999999999999999999999985

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=100.00  E-value=3.9e-50  Score=483.62  Aligned_cols=510  Identities=16%  Similarity=0.127  Sum_probs=302.6

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCccccCCcccc-----------------ccC----------
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSV-----------------LSL----------  213 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~~~iP~~~~~-----------------l~~----------  213 (1381)
                      .+||+||||||+||+.+|.++++. |.+|+++|+++.......-+.....                 ...          
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~-G~~V~liE~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~l~~~~~  123 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVV  123 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCCCSSSSTTCCTTCSHHHHHSGGGTHHHHHHTCEESCCCCCCCCC
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhC-CCcEEEEeccCCCCCcccccccccccCCCccHHHHHHHHHHhhhhcccccccccc
Confidence            469999999999999999999985 9999999998754311100000000                 000          


Q ss_pred             ---CcccCcccccccccccccCCCceee----cccccccCccccccceEEecCCccchHHHhhcCCCCC-ChhhHHHHHH
Q psy11618        214 ---SEFDHAYLAEPSQFAGLGVRNARIK----ITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGW-GYDETLKYFV  285 (1381)
Q Consensus       214 ---s~~DW~Y~TePq~~a~~gl~~r~i~----~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GW-swedLlPYFk  285 (1381)
                         ...+|.-.+.--...+.. ......    ..+|+.+||.+.+|.+...|..+.  |+|....+.++ ++++..++++
T Consensus       124 ~~~~~~~~~~~~v~l~~g~~~-~~~~~~~l~~~~~~~~vGG~~~~~~g~~~r~~~~--e~~~~l~~~~v~~~~~l~~~~~  200 (623)
T 3pl8_A          124 DTLSPTSWQASTFFVRNGSNP-EQDPLRNLSGQAVTRVVGGMSTAWTCATPRFDRE--QRPLLVKDDADADDAEWDRLYT  200 (623)
T ss_dssp             CCSCTTSCCCSSCCSCTTCCT-TCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGG--GSCCSSTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccCcEEeccCCCc-ccccchhhhhhcccccccCcceeeccccccCChH--HhhhhhcccCccChhhHHHHHH
Confidence               000221110000000000 000111    236888999999999988887765  33333333344 5788999999


Q ss_pred             HhcccccCCcccCCCCCCCCCCccccCCCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchh
Q psy11618        286 KSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAA  365 (1381)
Q Consensus       286 KsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~~e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa  365 (1381)
                      +.|+....+.          +.       .. .........+..++.... ..... .. +.....   ......|+++.
T Consensus       201 ~~~~l~~vgg----------~~-------~~-~~~~~~~~~~~l~~~~~~-~~~~~-~~-p~a~~~---~~~~~~r~s~~  256 (623)
T 3pl8_A          201 KAESYFQTGT----------DQ-------FK-ESIRHNLVLNKLTEEYKG-QRDFQ-QI-PLAATR---RSPTFVEWSSA  256 (623)
T ss_dssp             HHHHHHTEES----------CT-------TT-TCHHHHHHHHHHHHHTTT-TSCCE-EC-CEEEEE---EETTEEEECCH
T ss_pred             HHHHhccccc----------cc-------cc-CccccccchHHHHHhhhh-ccccc-cc-chhhcc---CCCCccccchH
Confidence            9987753221          10       11 011111122222222111 00000 00 000000   01245689999


Q ss_pred             hhcchhh------hcCCCCeEEEcCcEEEEEEec-CCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        366 DAYLTPI------AGKRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       366 ~AYL~Pa------~~~R~NLtILTnA~VtRIlfd-~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      .+++++.      . +|+|++|+++++|+||+.| +++|++||++.+. +|++++++|+ |||+|||+++|||+|++|||
T Consensus       257 ~~~l~~~~~l~~~~-~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~-~VIlaaG~~~s~~lL~~sgi  334 (623)
T 3pl8_A          257 NTVFDLQNRPNTDA-PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKAD-VYVLTAGAVHNTQLLVNSGF  334 (623)
T ss_dssp             HHHCCCCCEEETTE-EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEE-EEEECSCTTHHHHHHHTTTS
T ss_pred             Hhhhhhhhcchhhc-cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECC-EEEEcCCCcCCHHHHHhcCC
Confidence            9999887      5 6789999999999999998 3569999999973 7888899995 99999999999999999999


Q ss_pred             CCCCccccCCCCcccCCc-cchhccccccCCceEEEecCCccccchhhHHHHHHhhccCCCCCCcccccccccccccccc
Q psy11618        438 GPKAHLDEVKIPVKQDLR-VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNMHSYCYCLAHLDEVKI  516 (1381)
Q Consensus       438 GPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~~vvf~l~~~vs~sl~~a~a~~~Y~~nrtGPls~~~s~~~~~~~LDe~~~  516 (1381)
                      ||+++++++||++  |+| ||||+|||+.. .+.++.+++..   +  .-..+|  +..|-..   +..          .
T Consensus       335 G~~~~l~~~~i~~--~l~~vG~nl~dh~~~-~~~~~~~~~~~---~--~~~~~~--~~~g~~g---~~~----------~  391 (623)
T 3pl8_A          335 GQLGRPNPANPPE--LLPSLGSYITEQSLV-FCQTVMSTELI---D--SVKSDM--TIRGTPG---ELT----------Y  391 (623)
T ss_dssp             SCCSSCCTTSCCS--SCTTTTBSCBCCCEE-EEEEEECHHHH---H--HHTTTC--EEESCTT---STT----------C
T ss_pred             CccccccccCCCC--CCcccccchhhCcCc-eEEEEECCccc---c--cccccc--cccccCC---Ccc----------e
Confidence            9999999999999  999 99999999988 47777765421   0  000000  1111000   000          0


Q ss_pred             ccccccccccccccccccCCCcccccccchhhhhhHHHHHHHHHcCCCCCccccccceEEEeecCCCCCCC-Ceeeeeec
Q psy11618        517 PVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARP-DLEIHLLY  595 (1381)
Q Consensus       517 ~~~~~l~vg~~~~~~~~~a~~~~a~~~pl~~tv~s~~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~~~~P-DIq~~~~p  595 (1381)
                      .+        +....++.+    . ..|.    ...+....|.+..++|...+-. +.......+.....| +.|.+-..
T Consensus       392 ~~--------~~~~~~p~~----~-~~p~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  453 (623)
T 3pl8_A          392 SV--------TYTPGASTN----K-HPDW----WNEKVKNHMMQHQEDPLPIPFE-DPEPQVTTLFQPSHPWHTQIHRDA  453 (623)
T ss_dssp             EE--------ECCTTCTTC----S-SCHH----HHHHHHHHHHHCTTCCCSSCTT-CCCCEEECCCBTTBCEEEEEECCS
T ss_pred             ec--------ccccCcccc----c-CCch----hhhhhhhhhhcccccccccccc-cccccccccccccCcchhhhhhhh
Confidence            00        000001100    0 0000    0112223444443454432100 000000000000111 00100000


Q ss_pred             cccccchhhhhhhhccccchhHHHHHhccCCCCCeE-EEEEeecccCcCcEEEeec--CCCCCCccccCCCCCChh-hHH
Q psy11618        596 FQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMG-VISMSLVNPKSCGKVTLKS--ADPLAPPCIDTGILSEPE-DLA  671 (1381)
Q Consensus       596 ~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~-tI~v~Ll~P~SRGsV~L~S--sDP~d~PvIDpNYLSdP~-Dle  671 (1381)
                      .+.           . .+.++.        +..-.. ......+.|.++|+|+|++  +|+++.|+++.||..+|. |++
T Consensus       454 ~~~-----------~-~~~~~~--------~~~~~~~~~~~~e~~p~~~n~v~L~~~~~D~~g~P~~~~~~~~~~~~d~~  513 (623)
T 3pl8_A          454 FSY-----------G-AVQQSI--------DSRLIVDWRFFGRTEPKEENKLWFSDKITDAYNMPQPTFDFRFPAGRTSK  513 (623)
T ss_dssp             CCC-----------S-CCCCSS--------CGGGEEEEEEEECCCCCTTCEEEEEEEEECTTSSEEEEEECCCCTTHHHH
T ss_pred             ccc-----------c-cccccc--------ccceEEEEEEEEeeccCCCCEEEECCCCcCCCCCceEEEEEeCCcHHHHH
Confidence            000           0 000000        000112 2346778899999999987  899999999999999999 999


Q ss_pred             HHHHHHHHHHHHhcCHHHHHhcccccccCCccCCCCCCCCchhHHHHHhcccCCCcccccCccccCCCCCCccc-CCCCe
Q psy11618        672 TLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGTVMMGNADDPNAVV-TPDLK  750 (1381)
Q Consensus       672 ~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~~SDEeIe~yIR~~a~T~yHPvGTCRMGP~dDp~GVV-Ds~LR  750 (1381)
                      .+.++.+.+++++++     .|.+..     +       +++++     ....+++|++||||||++++++||| |+++|
T Consensus       514 ~~~~~~~~~~~~~~~-----~g~~~~-----~-------~~~~~-----~~~~~~~H~~gt~~mg~~~~~~~vvvd~~~~  571 (623)
T 3pl8_A          514 EAEDMMTDMCVMSAK-----IGGFLP-----G-------SLPQF-----MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSR  571 (623)
T ss_dssp             HHHHHHHHHHHHHTT-----TEEECT-----T-------SCSEE-----CCTTTTCCCBCTTCBCSSTTTTTCSBCTTCB
T ss_pred             HHHHHHHHHHHHHHh-----cCCccc-----C-------chhhc-----cCCCCcccCCCceeCCCCCCCCeeEECCCCC
Confidence            999999999998754     333211     0       11111     1246789999999999875567997 99999


Q ss_pred             EeCcCCcEEecccCCCCCCCCCchHHHHHHHHH
Q psy11618        751 VKGIKGLRVADISVLPNAIITQSDAISFLLLFL  783 (1381)
Q Consensus       751 VhGVdNLRVVDASVfPtiPSgNpqApVyMIA~l  783 (1381)
                      |||++||||+||||||+.+++||++|+||+|.=
T Consensus       572 ~~~~~~l~v~d~s~~p~~~~~np~~t~~a~a~r  604 (623)
T 3pl8_A          572 VFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIK  604 (623)
T ss_dssp             BTTCSSEEECSGGGCCSCCCSCCHHHHHHHHHH
T ss_pred             EecCCCeEEecCCccCCCCCcChHHHHHHHHHH
Confidence            999999999999999999999999999999863

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.55  E-value=9.1e-14  Score=163.08  Aligned_cols=60  Identities=20%  Similarity=0.348  Sum_probs=51.2

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh-hHHHHHHc
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA-NAQLLLLS  435 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~-SPqLLmlS  435 (1381)
                      ++.|++|+++++|++++.|+++|++||++.+ +|++++++|+|.||+|+|+++ +|+++..-
T Consensus       213 ~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~-~g~~~~i~A~k~VVlAtGG~~~n~~m~~~~  273 (510)
T 4at0_A          213 EKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQ-YGKEVAVRARRGVVLATGSFAYNDKMIEAH  273 (510)
T ss_dssp             HHTTCEEECSEEEEEEEECTTCCEEEEEEEE-TTEEEEEEEEEEEEECCCCCTTCHHHHHHH
T ss_pred             HHcCCEEEecCEeEEEEECCCCcEEEEEEEE-CCcEEEEEeCCeEEEeCCChhhCHHHHHHh
Confidence            3568999999999999997567999999988 788889999779999999997 67766543

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.12  E-value=5.8e-11  Score=129.39  Aligned_cols=59  Identities=12%  Similarity=0.119  Sum_probs=44.4

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHc-CCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLS-GIG  438 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlS-GIG  438 (1381)
                      ++.+.++.++++|+++..+++ ++++|+..  +|++.+++|+ .||+|+|+- |++++... |+.
T Consensus       161 ~~~Gv~i~~~~~v~~i~~~~~-~~~~v~~~--~g~~~~~~a~-~VV~A~G~~-s~~l~~~~~g~~  220 (369)
T 3dme_A          161 ESDGAQLVFHTPLIAGRVRPE-GGFELDFG--GAEPMTLSCR-VLINAAGLH-APGLARRIEGIP  220 (369)
T ss_dssp             HHTTCEEECSCCEEEEEECTT-SSEEEEEC--TTSCEEEEEE-EEEECCGGG-HHHHHHTEETSC
T ss_pred             HHCCCEEECCCEEEEEEEcCC-ceEEEEEC--CCceeEEEeC-EEEECCCcc-hHHHHHHhcCCC
Confidence            456899999999999998733 33445443  5766678885 699999975 88998877 753

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.09  E-value=6.1e-10  Score=132.56  Aligned_cols=58  Identities=21%  Similarity=0.319  Sum_probs=47.4

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLLm  433 (1381)
                      ++.|++|+++++|++++.+++++++||++.+.+|++++++| |.||+|+|+... ++++.
T Consensus       261 ~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A-~~VVlAtGg~s~~~~~~~  319 (566)
T 1qo8_A          261 KEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA-KSVVLATGGYGMNKEMIA  319 (566)
T ss_dssp             HHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEE-EEEEECCCCCTTCHHHHH
T ss_pred             HhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEc-CEEEEecCCcccCHHHHH
Confidence            35689999999999999873379999999865788788999 689999998875 44443

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.09  E-value=5.1e-10  Score=124.58  Aligned_cols=55  Identities=22%  Similarity=0.371  Sum_probs=42.4

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.+.++.++++|+++..+ ++++++|+..  +|   +++| +.||+|+|+- |+++....|+
T Consensus       185 ~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~--~g---~~~a-~~vV~a~G~~-s~~l~~~~g~  239 (405)
T 2gag_B          185 NEMGVDIIQNCEVTGFIKD-GEKVTGVKTT--RG---TIHA-GKVALAGAGH-SSVLAEMAGF  239 (405)
T ss_dssp             HHTTCEEECSCCEEEEEES-SSBEEEEEET--TC---CEEE-EEEEECCGGG-HHHHHHHHTC
T ss_pred             HHCCCEEEcCCeEEEEEEe-CCEEEEEEeC--Cc---eEEC-CEEEECCchh-HHHHHHHcCC
Confidence            3568999999999999887 5677788653  45   4777 4799999974 6677777765

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.08  E-value=1.1e-09  Score=130.25  Aligned_cols=58  Identities=19%  Similarity=0.255  Sum_probs=47.1

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLLm  433 (1381)
                      ++.|++++++++|+++..+++++++||++.+.+|++.+++|+ .||+|+|.... ++++.
T Consensus       266 ~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~-~VVlAtGg~~~n~~~~~  324 (571)
T 1y0p_A          266 VKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKAD-AVILATGGFAKNNERVA  324 (571)
T ss_dssp             HHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECS-EEEECCCCCTTCHHHHH
T ss_pred             HhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECC-eEEEeCCCcccCHHHHH
Confidence            456899999999999998744789999998656887889996 59999998754 54443

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.96  E-value=5.2e-09  Score=125.95  Aligned_cols=53  Identities=15%  Similarity=0.283  Sum_probs=44.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .+.|+++.++++|++++.+++++++||++.+ .+|+.++++| |.||+|+|+...
T Consensus       154 ~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A-~~VVlAtGg~~~  207 (588)
T 2wdq_A          154 LKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKA-RATVLATGGAGR  207 (588)
T ss_dssp             HHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEE-EEEEECCCCCGG
T ss_pred             HhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEc-CEEEECCCCCcc
Confidence            3569999999999999986457899999986 3788788999 589999999765

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.96  E-value=2.5e-09  Score=127.89  Aligned_cols=61  Identities=23%  Similarity=0.146  Sum_probs=51.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      .+.+.++.++++|+++..+ +++++||++.|. +|++.+++| |.||.|+|+ .|+++....|+.
T Consensus       181 ~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A-~~VV~AaG~-~s~~l~~~~g~~  242 (561)
T 3da1_A          181 VARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYA-KKVVNAAGP-WVDTLREKDRSK  242 (561)
T ss_dssp             HHTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEE-EEEEECCGG-GHHHHHHTTTCC
T ss_pred             HHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEEC-CEEEECCCc-chHHHHHhcCCC
Confidence            3568999999999999987 678999999874 577788999 479999996 588999888875

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.93  E-value=1e-08  Score=124.70  Aligned_cols=52  Identities=15%  Similarity=0.233  Sum_probs=45.2

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .+.|+++.++++|++++.+ +++++||.+.+ .+|+.++++| |.||+|+|+.+.
T Consensus       166 ~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A-~~VVlATGG~~~  218 (621)
T 2h88_A          166 LRYDTSYFVEYFALDLLME-NGECRGVIALCIEDGTIHRFRA-KNTVIATGGYGR  218 (621)
T ss_dssp             TTSCCEEEETEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEE-EEEEECCCCCGG
T ss_pred             HhCCCEEEEceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccc
Confidence            5689999999999999987 67999999986 3788888999 579999999874

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.91  E-value=9.1e-09  Score=122.60  Aligned_cols=53  Identities=26%  Similarity=0.388  Sum_probs=43.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCCC------eEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQN------VATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~------RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +++|+++.++++|++++.++++      +++||++.+. +|+.++++| |.||+|+|+...
T Consensus       150 ~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~~  209 (540)
T 1chu_A          150 NHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHA-KAVVLATGGASK  209 (540)
T ss_dssp             HCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEEC-SEEEECCCCCGG
T ss_pred             cCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence            3479999999999999984233      8999999863 688788999 589999998764

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.91  E-value=2.9e-09  Score=118.10  Aligned_cols=56  Identities=23%  Similarity=0.301  Sum_probs=43.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      ++.+.++.++++|+++..+ +++++||+..  +|   +++|+ .||+|+|+- |+++....|+.
T Consensus       160 ~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~--~g---~i~a~-~VV~A~G~~-s~~l~~~~g~~  215 (382)
T 1y56_B          160 KEYGAKLLEYTEVKGFLIE-NNEIKGVKTN--KG---IIKTG-IVVNATNAW-ANLINAMAGIK  215 (382)
T ss_dssp             HHTTCEEECSCCEEEEEES-SSBEEEEEET--TE---EEECS-EEEECCGGG-HHHHHHHHTCC
T ss_pred             HHCCCEEECCceEEEEEEE-CCEEEEEEEC--Cc---EEECC-EEEECcchh-HHHHHHHcCCC
Confidence            4568999999999999987 5678888652  34   57885 699999975 77787777753

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.89  E-value=1.8e-08  Score=120.51  Aligned_cols=60  Identities=18%  Similarity=0.210  Sum_probs=48.2

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh-hHHHHHHc
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA-NAQLLLLS  435 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~-SPqLLmlS  435 (1381)
                      ++.|++++++++|++++.+++++++||++.+++|++.+++| |.||+|+|... .++++..-
T Consensus       266 ~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A-~~VVlAtGg~~~~~~~~~~~  326 (572)
T 1d4d_A          266 VKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKA-DAVVIAAGGFAKNNERVSKY  326 (572)
T ss_dssp             HHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEEC-SEEEECCCCCTTCHHHHHHH
T ss_pred             HHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEc-CEEEEeCCCCccCHHHHHHh
Confidence            45689999999999999873378999999865788888999 68999999876 56666543

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.88  E-value=6.2e-09  Score=124.71  Aligned_cols=61  Identities=18%  Similarity=0.226  Sum_probs=50.1

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      .+.+.++.++++|+++..+ +++++||++.|. +|+..+++|+ .||+|+|+- |+++....|+.
T Consensus       199 ~~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~~tg~~~~i~A~-~VV~AaG~w-s~~l~~~~g~~  260 (571)
T 2rgh_A          199 AEDGAYLVSKMKAVGFLYE-GDQIVGVKARDLLTDEVIEIKAK-LVINTSGPW-VDKVRNLNFTR  260 (571)
T ss_dssp             HHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEBS-CEEECCGGG-HHHHHTTCCSS
T ss_pred             HHcCCeEEeccEEEEEEEe-CCEEEEEEEEEcCCCCEEEEEcC-EEEECCChh-HHHHHHhhccC
Confidence            3568999999999999987 568999999874 5666789995 799999976 88888766653

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.87  E-value=5.6e-09  Score=114.84  Aligned_cols=37  Identities=24%  Similarity=0.301  Sum_probs=32.9

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ..+++|+||||||.+|+.+|.+|+ + |.+|.|+|+++.
T Consensus         6 ~~~~~dv~IIGaGi~Gls~A~~La-~-G~~V~vlE~~~~   42 (381)
T 3nyc_A            6 HPIEADYLVIGAGIAGASTGYWLS-A-HGRVVVLEREAQ   42 (381)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHT-T-TSCEEEECSSSS
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHh-C-CCCEEEEECCCC
Confidence            345789999999999999999999 4 899999999853

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.86  E-value=1.1e-08  Score=124.29  Aligned_cols=50  Identities=18%  Similarity=0.232  Sum_probs=42.2

Q ss_pred             Ce-EEEcCcEEEEEEecCC--CeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhh
Q psy11618        378 NL-YVLKRSKVTKVIINDQ--NVATGVEYVN-SKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       378 NL-tILTnA~VtRIlfd~g--~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      |+ ++.++++|++++.+++  ++++||++.+ .+|+.++++| |.||+|+|....
T Consensus       166 gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-~~VVlAtGG~~~  219 (643)
T 1jnr_A          166 GEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKA-KAVILATGGATL  219 (643)
T ss_dssp             CGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEEC-SEEEECCCCBCS
T ss_pred             CCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEc-CEEEECCCcccc
Confidence            89 9999999999998733  3999999865 3677778999 589999998875

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.85  E-value=1.1e-08  Score=125.22  Aligned_cols=52  Identities=12%  Similarity=0.250  Sum_probs=44.5

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .+.|+++.+++.|++++.+ +++++||.+.+ .+|+.++++|+ .||+|+|+.+.
T Consensus       169 ~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~G~~~~i~A~-~VVlATGG~~~  221 (660)
T 2bs2_A          169 LKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAK-GTLIATGGYGR  221 (660)
T ss_dssp             HHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECS-EEEECCCCCGG
T ss_pred             HhCCCEEEECcEEEEEEec-CCEEEEEEEEECCCCcEEEEEcC-EEEEccCcchh
Confidence            3569999999999999987 67999999876 37888889995 89999999874

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.83  E-value=7.9e-09  Score=117.38  Aligned_cols=51  Identities=25%  Similarity=0.372  Sum_probs=40.0

Q ss_pred             CCCCeEEEcCc---EEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618        375 KRTNLYVLKRS---KVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL  432 (1381)
Q Consensus       375 ~R~NLtILTnA---~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLL  432 (1381)
                      ++.+.++.+++   +|++|..+ +++++||+..  +|+  +++|+ .||+|+|+- |++++
T Consensus       172 ~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~--~G~--~i~Ad-~VV~AtG~~-s~~l~  225 (438)
T 3dje_A          172 QRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTA--DGK--IWRAE-RTFLCAGAS-AGQFL  225 (438)
T ss_dssp             HHTTCEEEESTTTTCEEEEEEE-TTEEEEEEET--TTE--EEECS-EEEECCGGG-GGGTS
T ss_pred             HhcCCEEEeCCcCceEEEEEec-CCeEEEEEEC--CCC--EEECC-EEEECCCCC-hhhhc
Confidence            35689999999   99999987 6789999764  464  57785 699999986 55554

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.83  E-value=2.6e-08  Score=110.36  Aligned_cols=34  Identities=35%  Similarity=0.592  Sum_probs=32.0

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +||+||||||.+|+.+|.+|+++ |++|.|+|+++
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~-G~~V~vie~~~   36 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFD   36 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCC
Confidence            58999999999999999999986 89999999985

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.83  E-value=7.5e-09  Score=126.67  Aligned_cols=49  Identities=16%  Similarity=0.270  Sum_probs=42.4

Q ss_pred             CeEEEcCcEEEEEEecCC--CeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618        378 NLYVLKRSKVTKVIINDQ--NVATGVEYVNS-KGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       378 NLtILTnA~VtRIlfd~g--~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      |+++..++.|++++.+++  +|++||...+. +|+.++++| |.||+|+|..+
T Consensus       182 gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVLATGG~g  233 (662)
T 3gyx_A          182 QDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKA-NAMVVACGGAV  233 (662)
T ss_dssp             TTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEEC-SEEEECCCCBC
T ss_pred             CcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEe-CEEEECCCccc
Confidence            999999999999999844  49999998763 688888999 57999999876

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.81  E-value=7.1e-08  Score=116.61  Aligned_cols=53  Identities=17%  Similarity=0.360  Sum_probs=44.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchhhH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIANA  429 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~SP  429 (1381)
                      +++|+++.++++|+++..+ +++++||.+.+ .+|+.++++|+ .||+|+|+....
T Consensus       146 ~~gnv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~s~~  199 (602)
T 1kf6_A          146 QFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGRV  199 (602)
T ss_dssp             TCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECS-CEEECCCCCGGG
T ss_pred             hCCCcEEEeCCEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCCccc
Confidence            4567999999999999987 67899998876 37888889996 699999987654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.78  E-value=1.3e-08  Score=123.45  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=32.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +++|+||||||.||+++|.+|+++ |++|.|+|+++
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~-G~~V~vlEk~~  305 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRR-GWQVTLYCADE  305 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            459999999999999999999986 99999999975

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.77  E-value=3.4e-08  Score=110.53  Aligned_cols=35  Identities=26%  Similarity=0.530  Sum_probs=32.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +++|+||||||.+|+.+|.+|+++ |++|+|+|+++
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~-G~~V~vlE~~~   37 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAER-GHRVLVLERHT   37 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            358999999999999999999986 89999999985

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.75  E-value=2.7e-08  Score=123.62  Aligned_cols=55  Identities=22%  Similarity=0.266  Sum_probs=43.2

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.+.++.++++|++|..+ ++++++|+..  +|   +++|+ .||+|+|+- |+++....|+
T Consensus       162 ~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~--~G---~i~Ad-~VV~AaG~~-s~~l~~~~g~  216 (830)
T 1pj5_A          162 ESAGVTYRGSTTVTGIEQS-GGRVTGVQTA--DG---VIPAD-IVVSCAGFW-GAKIGAMIGM  216 (830)
T ss_dssp             HHTTCEEECSCCEEEEEEE-TTEEEEEEET--TE---EEECS-EEEECCGGG-HHHHHHTTTC
T ss_pred             HHcCCEEECCceEEEEEEe-CCEEEEEEEC--Cc---EEECC-EEEECCccc-hHHHHHHhCC
Confidence            3568999999999999987 5677788642  34   57885 799999975 6888887775

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.72  E-value=9.3e-09  Score=110.97  Aligned_cols=57  Identities=11%  Similarity=0.200  Sum_probs=45.5

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      +++|+++.++++|++|.-+ ++++++|++.+. +|+..++.++ .||+|+|.--++.++.
T Consensus       220 ~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~~~  277 (338)
T 3itj_A          220 KNEKIEILYNTVALEAKGD-GKLLNALRIKNTKKNEETDLPVS-GLFYAIGHTPATKIVA  277 (338)
T ss_dssp             HCTTEEEECSEEEEEEEES-SSSEEEEEEEETTTTEEEEEECS-EEEECSCEEECCGGGB
T ss_pred             hcCCeEEeecceeEEEEcc-cCcEEEEEEEECCCCceEEEEeC-EEEEEeCCCCChhHhh
Confidence            4569999999999999876 567999999874 5767788885 7999999776655543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.68  E-value=2.4e-08  Score=121.74  Aligned_cols=36  Identities=28%  Similarity=0.326  Sum_probs=32.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|+||||||.||+++|.+|+++ |++|.|+|+++.
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~-G~~V~vlEk~~~  298 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRR-GAVVTLYCADAQ  298 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTT-TCCEEEEESSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC-CCcEEEEeCCCc
Confidence            469999999999999999999986 999999999853

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.67  E-value=1.2e-08  Score=112.93  Aligned_cols=37  Identities=19%  Similarity=0.406  Sum_probs=33.6

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ...+||+||||||.+|+.+|.+|+++ |.+|.|+|+++
T Consensus        14 ~~~~~dvvIIGgG~~Gl~~A~~La~~-G~~V~llE~~~   50 (382)
T 1ryi_A           14 MKRHYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGT   50 (382)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence            44679999999999999999999985 89999999985

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.67  E-value=9.2e-08  Score=105.52  Aligned_cols=35  Identities=26%  Similarity=0.464  Sum_probs=32.4

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +||+||||||.+|+.+|.+|+++ |++|.|+|+++.
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~-G~~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHT-TCCEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence            58999999999999999999986 899999999863

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.66  E-value=2.6e-08  Score=113.74  Aligned_cols=35  Identities=37%  Similarity=0.483  Sum_probs=32.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCC-CeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg-~sVLVLEAG~  196 (1381)
                      +++|+||||||.+|+.+|.+|+++ | .+|.|+|+++
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~-G~~~V~vlE~~~   57 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVW-SGGSVLVVDAGH   57 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHH-HCSCEEEEESSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEccCC
Confidence            679999999999999999999987 6 8999999943

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.66  E-value=3.2e-08  Score=108.47  Aligned_cols=58  Identities=24%  Similarity=0.284  Sum_probs=42.6

Q ss_pred             hcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhH
Q psy11618        367 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA  429 (1381)
Q Consensus       367 AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SP  429 (1381)
                      .++...+ .+.+.++..+++|+.+..+ ++++++|.... +|+..+++|+ -||-|.| .+|.
T Consensus       106 ~~L~~~a-~~~G~~~~~~~~v~~~~~~-~~~~~~v~~~~-~~~~~~~~a~-~vIgAdG-~~S~  163 (397)
T 3oz2_A          106 KHLAALA-AKAGADVWVKSPALGVIKE-NGKVAGAKIRH-NNEIVDVRAK-MVIAADG-FESE  163 (397)
T ss_dssp             HHHHHHH-HHHTCEEESSCCEEEEEEE-TTEEEEEEEEE-TTEEEEEEEE-EEEECCC-TTCH
T ss_pred             HHHHHHH-HhcCcEEeeeeeeeeeeec-cceeeeeeecc-cccceEEEEe-EEEeCCc-cccH
Confidence            3443333 4568899999999999887 67899998877 7888889994 4555555 5665

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.63  E-value=1.7e-08  Score=116.54  Aligned_cols=49  Identities=16%  Similarity=0.253  Sum_probs=39.4

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANA  429 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SP  429 (1381)
                      ++.|+++.++++|+++..+ +++++||+..  +|+  +++|+ .||+|+|+...|
T Consensus       145 ~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~--~G~--~i~Ad-~VVlAtGg~s~~  193 (447)
T 2i0z_A          145 KDLGVKIRTNTPVETIEYE-NGQTKAVILQ--TGE--VLETN-HVVIAVGGKSVP  193 (447)
T ss_dssp             HHTTCEEECSCCEEEEEEE-TTEEEEEEET--TCC--EEECS-CEEECCCCSSSG
T ss_pred             HHCCCEEEeCcEEEEEEec-CCcEEEEEEC--CCC--EEECC-EEEECCCCCcCC
Confidence            3578999999999999987 5677888764  464  57884 699999998866

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.61  E-value=2.2e-07  Score=101.24  Aligned_cols=37  Identities=30%  Similarity=0.431  Sum_probs=33.6

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+||++|||||+||+.+|.++++++|.+|.++|++++
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~   74 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   74 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence            4699999999999999999999855899999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.58  E-value=2.4e-07  Score=99.13  Aligned_cols=66  Identities=23%  Similarity=0.296  Sum_probs=52.1

Q ss_pred             cchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        368 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       368 YL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      +.+... ++.|+++.++++|+++.-+  ++.++|++.+. +|+++++.++ .||+|+|.--+..++..+|+
T Consensus       195 ~~~~~~-~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~~~g~  261 (323)
T 3f8d_A          195 YVETVK-KKPNVEFVLNSVVKEIKGD--KVVKQVVVENLKTGEIKELNVN-GVFIEIGFDPPTDFAKSNGI  261 (323)
T ss_dssp             HHHHHH-TCTTEEEECSEEEEEEEES--SSEEEEEEEETTTCCEEEEECS-EEEECCCEECCHHHHHHTTC
T ss_pred             HHHHHH-hCCCcEEEeCCEEEEEecc--CceeEEEEEECCCCceEEEEcC-EEEEEECCCCChhHHhhcCe
Confidence            333444 5679999999999999765  56888998873 5777788885 79999998877788888876

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.57  E-value=1.4e-07  Score=113.32  Aligned_cols=37  Identities=16%  Similarity=0.308  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ..++|+||||||+||+.+|.+|++. |.+|.|+|+|++
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~-G~kV~VlEr~~~  141 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQM-GFNPIIVERGKE  141 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHT-TCCCEEECSSCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCeEEEEEccCc
Confidence            3468999999999999999999984 999999999964

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.56  E-value=1e-07  Score=112.87  Aligned_cols=40  Identities=28%  Similarity=0.547  Sum_probs=35.2

Q ss_pred             CCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        158 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       158 ~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ...++||+||||||.+|+++|.+|+++ |++|+++|+++..
T Consensus        16 ~~~~~~dv~iiG~G~~g~~~a~~l~~~-g~~v~~~e~~~~~   55 (475)
T 3p1w_A           16 FQGEHYDVIILGTGLKECILSGLLSHY-GKKILVLDRNPYY   55 (475)
T ss_dssp             -CCCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             cccccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeccCCC
Confidence            345689999999999999999999975 9999999999754

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.56  E-value=3.5e-07  Score=107.38  Aligned_cols=55  Identities=20%  Similarity=0.108  Sum_probs=44.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      .+.+.++.++++|+++..+ + ++.||+..|. +|++.+++|+ .||.|+|+- |.++..
T Consensus       160 ~~~Gv~i~~~~~V~~l~~~-~-~~~~V~~~d~~~G~~~~i~A~-~VV~AtG~~-s~~l~~  215 (501)
T 2qcu_A          160 VRKGGEVLTRTRATSARRE-N-GLWIVEAEDIDTGKKYSWQAR-GLVNATGPW-VKQFFD  215 (501)
T ss_dssp             HHTTCEEECSEEEEEEEEE-T-TEEEEEEEETTTCCEEEEEES-CEEECCGGG-HHHHHH
T ss_pred             HHcCCEEEcCcEEEEEEEe-C-CEEEEEEEECCCCCEEEEECC-EEEECCChh-HHHHHH
Confidence            3568999999999999887 3 6789988763 6777789995 699999975 777776

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.55  E-value=1.4e-07  Score=106.28  Aligned_cols=52  Identities=23%  Similarity=0.219  Sum_probs=42.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      ++.+.+|.+|++|++|..+ +++++||+.   +|+  +++|+ .||+|+|+-.+++++.
T Consensus       207 ~~~G~~i~~~~~V~~i~~~-~~~~~gv~~---~g~--~~~ad-~VV~a~~~~~~~~ll~  258 (425)
T 3ka7_A          207 SANGGKIHTGQEVSKILIE-NGKAAGIIA---DDR--IHDAD-LVISNLGHAATAVLCS  258 (425)
T ss_dssp             HHTTCEEECSCCEEEEEEE-TTEEEEEEE---TTE--EEECS-EEEECSCHHHHHHHTT
T ss_pred             HHcCCEEEECCceeEEEEE-CCEEEEEEE---CCE--EEECC-EEEECCCHHHHHHhcC
Confidence            3558999999999999987 678989865   354  57774 7999999999998664

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.47  E-value=2.6e-07  Score=108.54  Aligned_cols=50  Identities=26%  Similarity=0.411  Sum_probs=42.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCch
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAI  426 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI  426 (1381)
                      +++|.++..+++|+++..+ +++++||++.+.+|++++++| +-||.|.|+-
T Consensus       122 ~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~dG~~~~i~a-d~VI~AdG~~  171 (512)
T 3e1t_A          122 ERKGVDVRERHEVIDVLFE-GERAVGVRYRNTEGVELMAHA-RFIVDASGNR  171 (512)
T ss_dssp             HHTTCEEESSCEEEEEEEE-TTEEEEEEEECSSSCEEEEEE-EEEEECCCTT
T ss_pred             HhCCCEEEcCCEEEEEEEE-CCEEEEEEEEeCCCCEEEEEc-CEEEECCCcc
Confidence            3578999999999999987 678999999876787778999 5799999963

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.45  E-value=2.2e-07  Score=107.22  Aligned_cols=53  Identities=19%  Similarity=0.197  Sum_probs=36.7

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      ++.+.+|++|++|+||+.+ ++|++||+..|  |+  +++|+ .||.+|+.-+|.+-|.
T Consensus       232 ~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~~~--g~--~~~ad-~VV~~a~~~~~~~~Ll  284 (501)
T 4dgk_A          232 QDLGGEVVLNARVSHMETT-GNKIEAVHLED--GR--RFLTQ-AVASNADVVHTYRDLL  284 (501)
T ss_dssp             HHTTCEEECSCCEEEEEEE-TTEEEEEEETT--SC--EEECS-CEEECCC---------
T ss_pred             HHhCCceeeecceeEEEee-CCeEEEEEecC--Cc--EEEcC-EEEECCCHHHHHHHhc
Confidence            4568999999999999998 78999998864  66  45674 6999999988877664

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.44  E-value=1.2e-07  Score=109.76  Aligned_cols=37  Identities=30%  Similarity=0.446  Sum_probs=32.2

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++||+||||||+||+.+|.+++++ |.+|.|+|+++.
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~-G~~V~llEk~~~   61 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKR-GRRVLVIDHARA   61 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence            4579999999999999999999986 899999999874

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.41  E-value=1e-06  Score=100.30  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=46.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      ++.++++.++++|+++.-+ ++++++|+..+  |+  ++.|+ .||+|+|..-...++..+|+-
T Consensus       205 ~~~GV~i~~~~~v~~i~~~-~~~v~~v~l~d--G~--~i~aD-~Vv~a~G~~p~~~l~~~~gl~  262 (415)
T 3lxd_A          205 RAHGVDLRTGAAMDCIEGD-GTKVTGVRMQD--GS--VIPAD-IVIVGIGIVPCVGALISAGAS  262 (415)
T ss_dssp             HHTTCEEEETCCEEEEEES-SSBEEEEEESS--SC--EEECS-EEEECSCCEESCHHHHHTTCC
T ss_pred             HhCCCEEEECCEEEEEEec-CCcEEEEEeCC--CC--EEEcC-EEEECCCCccChHHHHhCCCC
Confidence            4679999999999999876 56888998754  65  46674 799999988777788888863

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.41  E-value=1e-06  Score=103.24  Aligned_cols=48  Identities=10%  Similarity=0.205  Sum_probs=37.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +++|+++..+++| ++..+ +++++||++.+.+|   +++| |.||+|+|+...
T Consensus       130 ~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~~~~g---~~~a-~~VVlAtGg~~~  177 (472)
T 2e5v_A          130 REEGIPIIEDRLV-EIRVK-DGKVTGFVTEKRGL---VEDV-DKLVLATGGYSY  177 (472)
T ss_dssp             HHTTCCEECCCEE-EEEEE-TTEEEEEEETTTEE---ECCC-SEEEECCCCCGG
T ss_pred             HhCCCEEEECcEE-EEEEe-CCEEEEEEEEeCCC---eEEe-eeEEECCCCCcc
Confidence            4679999999999 99887 67899998865223   3556 579999998753

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.39  E-value=6.7e-07  Score=100.53  Aligned_cols=35  Identities=29%  Similarity=0.526  Sum_probs=32.4

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +++|++|||||+||+++|..|+++ |.+|.|+|+++
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~-G~~V~v~E~~~   38 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQK   38 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence            469999999999999999999975 89999999985

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.38  E-value=8e-07  Score=94.98  Aligned_cols=57  Identities=14%  Similarity=0.190  Sum_probs=45.4

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      ++.|+++.++++|+++.-+ ++++++|++...+|+++++.++ .||+|.|..-++.++.
T Consensus       194 ~~~gv~~~~~~~v~~i~~~-~~~~~~v~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~  250 (315)
T 3r9u_A          194 KNEKIELITSASVDEVYGD-KMGVAGVKVKLKDGSIRDLNVP-GIFTFVGLNVRNEILK  250 (315)
T ss_dssp             HCTTEEEECSCEEEEEEEE-TTEEEEEEEECTTSCEEEECCS-CEEECSCEEECCGGGB
T ss_pred             hcCCeEEEeCcEEEEEEcC-CCcEEEEEEEcCCCCeEEeecC-eEEEEEcCCCCchhhh
Confidence            4779999999999999876 5688999988546887788885 7999999765554443

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.33  E-value=1.9e-06  Score=104.09  Aligned_cols=65  Identities=22%  Similarity=0.227  Sum_probs=47.5

Q ss_pred             cchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        368 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       368 YL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      ++.... +++|.++..+++|+++..+ +++.++|++.+ +|++.+++|+ -||.|+|+ +|. +-..-|+.
T Consensus       133 ~L~~~a-~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~-~G~~~~i~Ad-lVV~AdG~-~S~-lr~~lg~~  197 (591)
T 3i3l_A          133 LLLDEA-RSRGITVHEETPVTDVDLS-DPDRVVLTVRR-GGESVTVESD-FVIDAGGS-GGP-ISRKLGVR  197 (591)
T ss_dssp             HHHHHH-HHTTCEEETTCCEEEEECC-STTCEEEEEEE-TTEEEEEEES-EEEECCGG-GCH-HHHHHTCE
T ss_pred             HHHHHH-HhCCCEEEeCCEEEEEEEc-CCCEEEEEEec-CCceEEEEcC-EEEECCCC-cch-hHHHcCCC
Confidence            343333 4579999999999999886 56678998886 7877889995 79999997 553 33333554

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.31  E-value=5.3e-07  Score=104.56  Aligned_cols=38  Identities=29%  Similarity=0.488  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .++||+||||||.+|+++|.+|+++ |++|+|+|+.+..
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~-G~~V~vlE~~~~~   46 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHY   46 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence            3579999999999999999999975 9999999998754

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.29  E-value=7.1e-06  Score=93.81  Aligned_cols=37  Identities=38%  Similarity=0.530  Sum_probs=33.8

Q ss_pred             CcccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      .+||+||||||+||+.+|.+++++ +|.+|+++|+++.
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~  115 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA  115 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            469999999999999999999986 7899999999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.28  E-value=9.4e-07  Score=95.89  Aligned_cols=60  Identities=25%  Similarity=0.435  Sum_probs=47.3

Q ss_pred             CCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++|+++.++++|+++.-+ +++++||++.+. +|+++++.+ +.||+|+|....+.++..+|+
T Consensus       202 ~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~-D~vi~a~G~~p~~~~l~~~gl  262 (319)
T 3cty_A          202 KRNIPYIMNAQVTEIVGD-GKKVTGVKYKDRTTGEEKLIET-DGVFIYVGLIPQTSFLKDSGV  262 (319)
T ss_dssp             HTTCCEECSEEEEEEEES-SSSEEEEEEEETTTCCEEEECC-SEEEECCCEEECCGGGTTSCC
T ss_pred             cCCcEEEcCCeEEEEecC-CceEEEEEEEEcCCCceEEEec-CEEEEeeCCccChHHHhhccc
Confidence            578999999999999865 566889999853 677778888 479999998766666665554

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.26  E-value=1.6e-06  Score=104.31  Aligned_cols=70  Identities=14%  Similarity=0.261  Sum_probs=49.2

Q ss_pred             cchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEe----cCCeE-------EEEecCcEEEEcCCchhh--HHHHHH
Q psy11618        368 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVN----SKGET-------VRVTANKEVILTAGAIAN--AQLLLL  434 (1381)
Q Consensus       368 YL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd----~~Gr~-------~tV~ArKEVILSAGAI~S--PqLLml  434 (1381)
                      ++...+ ++.|++|..+++|+++..+++++++||+..+    ++|+.       .+++| |-||.|.|+-.+  .++...
T Consensus       149 ~L~~~a-~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~A-d~VV~AdG~~S~vr~~l~~~  226 (584)
T 2gmh_A          149 WMGEQA-EALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHA-KVTIFAEGCHGHLAKQLYKK  226 (584)
T ss_dssp             HHHHHH-HHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEEC-SEEEECCCTTCHHHHHHHHH
T ss_pred             HHHHHH-HHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEEC-CEEEEeeCCCchHHHHHHHH
Confidence            443333 3458999999999999987556899998864    24543       46888 579999997654  355555


Q ss_pred             cCCCC
Q psy11618        435 SGIGP  439 (1381)
Q Consensus       435 SGIGP  439 (1381)
                      -|+.+
T Consensus       227 ~gl~~  231 (584)
T 2gmh_A          227 FDLRA  231 (584)
T ss_dssp             TTTTT
T ss_pred             hCCCC
Confidence            56643

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.25  E-value=3.5e-06  Score=90.64  Aligned_cols=57  Identities=18%  Similarity=0.325  Sum_probs=44.7

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      +++|+++.++++|+++.-+ ++++++|++.+. +|+++++.++ .||+|+|....+.++.
T Consensus       191 ~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~  248 (310)
T 1fl2_A          191 SLKNVDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHNIELA-GIFVQIGLLPNTNWLE  248 (310)
T ss_dssp             TCTTEEEESSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGGT
T ss_pred             hCCCeEEecCCceEEEEcC-CCcEEEEEEEECCCCcEEEEEcC-EEEEeeCCccCchHHh
Confidence            4479999999999999765 567889999873 5777788884 7999999765555543

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.24  E-value=2e-06  Score=99.15  Aligned_cols=50  Identities=16%  Similarity=0.223  Sum_probs=41.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCch
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAI  426 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI  426 (1381)
                      .+.|.++..+++|+++..+ +++++||++.+. +|++.+++|+ -||.|.|+-
T Consensus       111 ~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad-~VV~AdG~~  161 (453)
T 3atr_A          111 QDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSK-VVVEATGYS  161 (453)
T ss_dssp             HHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECS-EEEECCGGG
T ss_pred             HHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcC-EEEECcCCc
Confidence            3478999999999999887 678999999865 6777788995 799999964

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.23  E-value=1e-05  Score=91.64  Aligned_cols=36  Identities=22%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCC------CeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSS------LKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg------~sVLVLEAG~d  197 (1381)
                      +++|+||||||.+|+++|.+|+++ |      ++|.|+||.+.
T Consensus         4 ~~~dVvIIGaGiaGLsaA~~L~~~-G~~~~~~~~V~vlEa~~~   45 (470)
T 3i6d_A            4 GKKHVVIIGGGITGLAAAFYMEKE-IKEKNLPLELTLVEASPR   45 (470)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHH-HTTTTCSEEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHh-ccccCCCCCEEEEECCCC
Confidence            358999999999999999999986 5      99999999854

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.21  E-value=4.9e-06  Score=94.46  Aligned_cols=38  Identities=34%  Similarity=0.401  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      ..+||++|||||+||+.+|.+++++ ++++|.++|+++.
T Consensus        63 ~~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~  101 (326)
T 2gjc_A           63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             cCcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc
Confidence            3568999999999999999999975 5899999999863

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.21  E-value=2e-06  Score=92.76  Aligned_cols=57  Identities=14%  Similarity=0.216  Sum_probs=44.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-C-CeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-K-GETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~-Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      ++.|+++.++++|+++.-+ +++++||++.+. + |++.++.++ .||+|+|.--.+.++.
T Consensus       195 ~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~g~~~~i~~D-~vv~a~G~~p~~~~~~  253 (320)
T 1trb_A          195 ENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIFE  253 (320)
T ss_dssp             HTSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECS-EEEECSCEEESCGGGT
T ss_pred             ccCCeEEEcCceeEEEEcC-CCceEEEEEEeccCCCceEEEEcC-EEEEEeCCCCChHHhc
Confidence            4679999999999999866 557889999863 2 665678885 7999999765555443

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.20  E-value=8.2e-06  Score=92.44  Aligned_cols=50  Identities=16%  Similarity=0.212  Sum_probs=38.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      ++.+.+|.+|++|++|..+ ++++  |  .. +|+  +++|+ .||+|+|+-.+++++-
T Consensus       200 ~~~G~~i~~~~~V~~i~~~-~~~v--V--~~-~g~--~~~ad-~Vv~a~~~~~~~~ll~  249 (421)
T 3nrn_A          200 MENKGKILTRKEVVEINIE-EKKV--Y--TR-DNE--EYSFD-VAISNVGVRETVKLIG  249 (421)
T ss_dssp             HTTTCEEESSCCEEEEETT-TTEE--E--ET-TCC--EEECS-EEEECSCHHHHHHHHC
T ss_pred             HHCCCEEEcCCeEEEEEEE-CCEE--E--Ee-CCc--EEEeC-EEEECCCHHHHHHhcC
Confidence            3568999999999999876 5555  3  33 565  46774 7999999999998763

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.19  E-value=4.4e-06  Score=98.70  Aligned_cols=61  Identities=21%  Similarity=0.352  Sum_probs=45.5

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHH-HHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ-LLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPq-LLmlSGI  437 (1381)
                      ++.++++.++++|++|.-+++++++|+.+...+|+ .+++|+ .||+|+|.--+.. ++..+|+
T Consensus       266 ~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~-~~i~aD-~Vv~A~G~~p~~~~~l~~~gl  327 (523)
T 1mo9_A          266 KEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGE-MRIETD-FVFLGLGEQPRSAELAKILGL  327 (523)
T ss_dssp             HHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEE-EEEECS-CEEECCCCEECCHHHHHHHTC
T ss_pred             HhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCc-EEEEcC-EEEECcCCccCCccCHHHcCC
Confidence            46799999999999998754566766666553554 467785 6999999776555 6777776

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.18  E-value=5e-06  Score=93.95  Aligned_cols=35  Identities=37%  Similarity=0.584  Sum_probs=31.9

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +||+||||||.||.++|.+|+++ |++|.|+||.+.
T Consensus         1 ~~dVvVIGaG~aGl~aA~~L~~~-G~~V~vlE~~~~   35 (431)
T 3k7m_X            1 MYDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGER   35 (431)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence            38999999999999999999986 899999999653

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.17  E-value=9.3e-06  Score=92.27  Aligned_cols=58  Identities=17%  Similarity=0.324  Sum_probs=46.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      ++.++++.++++|+++.-+ ++++++|+..+  |+  ++.| +.||+|+|.--+..++..+|+-
T Consensus       195 ~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~d--G~--~i~a-D~Vv~a~G~~p~~~l~~~~gl~  252 (404)
T 3fg2_P          195 SGAGIRMHYGVRATEIAAE-GDRVTGVVLSD--GN--TLPC-DLVVVGVGVIPNVEIAAAAGLP  252 (404)
T ss_dssp             HHTTCEEECSCCEEEEEEE-TTEEEEEEETT--SC--EEEC-SEEEECCCEEECCHHHHHTTCC
T ss_pred             HhCCcEEEECCEEEEEEec-CCcEEEEEeCC--CC--EEEc-CEEEECcCCccCHHHHHhCCCC
Confidence            4679999999999999876 56888888754  65  4667 4799999988777788888864

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.16  E-value=3.3e-06  Score=90.85  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=43.1

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLL  432 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLL  432 (1381)
                      .+.+.+..+++.+.++.-+ +++..|+++.+. .++.+++.+. .|++|.|..-...++
T Consensus       199 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~i~~d-~vi~a~G~~pn~~~l  255 (314)
T 4a5l_A          199 NHPKIEVIWNSELVELEGD-GDLLNGAKIHNLVSGEYKVVPVA-GLFYAIGHSPNSKFL  255 (314)
T ss_dssp             TCTTEEEECSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGG
T ss_pred             cccceeeEeeeeeEEEEee-eeccceeEEeecccccceeeccc-cceEecccccChhHh
Confidence            5678899999999999876 567888888764 5666778885 799999976554444

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.16  E-value=1.9e-06  Score=99.47  Aligned_cols=38  Identities=24%  Similarity=0.458  Sum_probs=34.0

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .++||+||||||.+|+++|.+|+++ |++|+++|+++..
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~-g~~v~~~e~~~~~   41 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPYY   41 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCc
Confidence            3569999999999999999999975 8999999998653

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.16  E-value=4.3e-06  Score=90.05  Aligned_cols=59  Identities=12%  Similarity=0.116  Sum_probs=45.2

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHc
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLS  435 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlS  435 (1381)
                      +++|+++.++++|+++.-+ ++++++|++.+. +|++.++.++ .||+|.|..-...++..+
T Consensus       190 ~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~  249 (311)
T 2q0l_A          190 NNDKIEFLTPYVVEEIKGD-ASGVSSLSIKNTATNEKRELVVP-GFFIFVGYDVNNAVLKQE  249 (311)
T ss_dssp             TCTTEEEETTEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECS-EEEECSCEEECCGGGBCT
T ss_pred             hCCCeEEEeCCEEEEEECC-CCcEeEEEEEecCCCceEEEecC-EEEEEecCccChhhhhcc
Confidence            4579999999999999765 457788988752 6777788885 799999976555555444

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.15  E-value=2e-06  Score=98.83  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=32.5

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +||+||||||+||+.+|.+++++ |.+|.|+|+++.
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~-G~~V~vlEk~~~   38 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKK   38 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            59999999999999999999986 899999999864

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.15  E-value=5.6e-06  Score=90.08  Aligned_cols=56  Identities=16%  Similarity=0.297  Sum_probs=43.5

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      +++|+++.++++|+++.-+  +++++|++.+. +|++.++.++ .||+|.|.--+..++.
T Consensus       199 ~~~gv~i~~~~~v~~i~~~--~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~  255 (325)
T 2q7v_A          199 ANPKMKFIWDTAVEEIQGA--DSVSGVKLRNLKTGEVSELATD-GVFIFIGHVPNTAFVK  255 (325)
T ss_dssp             TCTTEEEECSEEEEEEEES--SSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGGT
T ss_pred             hcCCceEecCCceEEEccC--CcEEEEEEEECCCCcEEEEEcC-EEEEccCCCCChHHHh
Confidence            4579999999999999754  56789999853 6777788885 7999999765555543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.11  E-value=1.6e-06  Score=85.42  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=32.3

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ++|++|||||+||+++|..|+++ |.+|.|+|+++.
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~-G~~V~v~Ek~~~   36 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAA-GHQVHLFDKSRG   36 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence            58999999999999999999986 999999999754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.11  E-value=2.6e-06  Score=94.19  Aligned_cols=61  Identities=20%  Similarity=0.205  Sum_probs=45.5

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.++++.++++|+++.-+ ++++++|++...+|++.++.++ .||+|.|.--.+.++..+|+
T Consensus       213 ~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~~~  273 (360)
T 3ab1_A          213 ANGTIDVYLETEVASIEES-NGVLTRVHLRSSDGSKWTVEAD-RLLILIGFKSNLGPLARWDL  273 (360)
T ss_dssp             HHTSEEEESSEEEEEEEEE-TTEEEEEEEEETTCCEEEEECS-EEEECCCBCCSCGGGGGSSC
T ss_pred             hcCceEEEcCcCHHHhccC-CCceEEEEEEecCCCeEEEeCC-EEEECCCCCCCHHHHHhhcc
Confidence            4568999999999999876 5678899887436776778884 79999996544445554443

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.09  E-value=1.6e-05  Score=93.64  Aligned_cols=36  Identities=28%  Similarity=0.416  Sum_probs=33.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++|++|||||+||+++|..|++. |.+|.|+|+.+.
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~-G~~v~viEr~~~   39 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQ-GVRVLVVERRPG   39 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            569999999999999999999986 999999999864

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.08  E-value=1.4e-05  Score=94.57  Aligned_cols=55  Identities=20%  Similarity=0.359  Sum_probs=43.9

Q ss_pred             CCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618        376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLL  432 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLL  432 (1381)
                      ++|+++.++++|++|.-+ +++++||++.+. +|+++++.++ .||+|.|..-+..++
T Consensus       403 ~~gV~v~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~l  458 (521)
T 1hyu_A          403 LKNVDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHSVALA-GIFVQIGLLPNTHWL  458 (521)
T ss_dssp             CTTEEEECSEEEEEEEEC-SSSEEEEEEEETTTCCEEEEECS-EEEECCCEEESCGGG
T ss_pred             CCCcEEEeCCEEEEEEcC-CCcEEEEEEEeCCCCceEEEEcC-EEEECcCCCCCchHH
Confidence            479999999999999765 568999999874 6777788885 799999976444444

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.06  E-value=4.3e-06  Score=91.72  Aligned_cols=55  Identities=16%  Similarity=0.267  Sum_probs=41.2

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLL  432 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLL  432 (1381)
                      +++|+++.++++|+++.-+  ++.++|++.+. +|++.++.++ .||+|.|.--++.++
T Consensus       202 ~~~gV~v~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~~  257 (335)
T 2a87_A          202 NNDKIRFLTNHTVVAVDGD--TTVTGLRVRDTNTGAETTLPVT-GVFVAIGHEPRSGLV  257 (335)
T ss_dssp             HCTTEEEECSEEEEEEECS--SSCCEEEEEEETTSCCEEECCS-CEEECSCEEECCTTT
T ss_pred             ccCCcEEEeCceeEEEecC--CcEeEEEEEEcCCCceEEeecC-EEEEccCCccChhHh
Confidence            4679999999999999754  35678888753 5665678885 799999976554444

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.98  E-value=4.9e-06  Score=90.42  Aligned_cols=58  Identities=16%  Similarity=0.260  Sum_probs=44.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCC-CeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQ-NVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g-~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      ++.|+++.++++|+++.-+++ +++++|++.+. +|++.++.++ .||+|+|.--+..++.
T Consensus       206 ~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~~~  265 (333)
T 1vdc_A          206 SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVS-GLFFAIGHEPATKFLD  265 (333)
T ss_dssp             TCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGGT
T ss_pred             hCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecC-EEEEEeCCccchHHhh
Confidence            567999999999999986622 27889999863 5776778884 7999999776655543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.97  E-value=2.5e-06  Score=91.84  Aligned_cols=60  Identities=10%  Similarity=0.115  Sum_probs=45.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.|+++.++++|+++.-+ ++ .++|++.+. +|+..++.++ .||+|.|.--++.++..+|+
T Consensus       200 ~~~gv~~~~~~~v~~i~~~-~~-~~~v~~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~~~~~  260 (332)
T 3lzw_A          200 HASKVNVLTPFVPAELIGE-DK-IEQLVLEEVKGDRKEILEID-DLIVNYGFVSSLGPIKNWGL  260 (332)
T ss_dssp             HHSSCEEETTEEEEEEECS-SS-CCEEEEEETTSCCEEEEECS-EEEECCCEECCCGGGGGSSC
T ss_pred             hcCCeEEEeCceeeEEecC-Cc-eEEEEEEecCCCceEEEECC-EEEEeeccCCCchHHhhcCc
Confidence            3679999999999999765 33 678888873 5667778884 79999997765556655554

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.97  E-value=3.1e-05  Score=89.16  Aligned_cols=63  Identities=14%  Similarity=0.160  Sum_probs=44.5

Q ss_pred             hcchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        367 AYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       367 AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      .++.... ++.|+++.+|++|++|.-   +   +|.+.+.+|+.+++.++ .||.++|.-. |..+..||.+
T Consensus       204 ~~l~~~l-~~~GV~~~~~~~v~~v~~---~---~~~~~~~~g~~~~i~~d-~vi~~~G~~~-~~~~~~~~~~  266 (430)
T 3hyw_A          204 RLVEDLF-AERNIDWIANVAVKAIEP---D---KVIYEDLNGNTHEVPAK-FTMFMPSFQG-PEVVASAGDK  266 (430)
T ss_dssp             HHHHHHH-HHTTCEEECSCEEEEECS---S---EEEEECTTSCEEEEECS-EEEEECEEEC-CHHHHTTCTT
T ss_pred             HHHHHHH-HhCCeEEEeCceEEEEeC---C---ceEEEeeCCCceEeecc-eEEEeccCCC-chHHHhcccc
Confidence            3444444 567999999999999842   2   34556657878889885 7999988554 4677777743

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.93  E-value=2e-05  Score=90.88  Aligned_cols=58  Identities=26%  Similarity=0.347  Sum_probs=43.7

Q ss_pred             CCCCeEEEcCcEEEEEEec-CCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd-~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.++++.++++|+++.-+ +++++++|+..  +|+  ++.+ +.||+|+|.--...++..+|+
T Consensus       202 ~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~--~G~--~i~~-D~Vv~a~G~~p~~~l~~~~gl  260 (431)
T 1q1r_A          202 REAGVDIRTGTQVCGFEMSTDQQKVTAVLCE--DGT--RLPA-DLVIAGIGLIPNCELASAAGL  260 (431)
T ss_dssp             HHHTCEEECSCCEEEEEECTTTCCEEEEEET--TSC--EEEC-SEEEECCCEEECCHHHHHTTC
T ss_pred             HhCCeEEEeCCEEEEEEeccCCCcEEEEEeC--CCC--EEEc-CEEEECCCCCcCcchhhccCC
Confidence            4568999999999999862 24677788764  464  4667 479999998755568888876

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.93  E-value=2.2e-05  Score=90.12  Aligned_cols=36  Identities=19%  Similarity=0.420  Sum_probs=31.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++|+||||||.||+++|.+|+++ |.+|.|+|+.+.
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~-g~~v~v~E~~~~   50 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSR-GTDAVLLESSAR   50 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTT-TCCEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence            458999999999999999999976 899999999865

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.89  E-value=3.8e-05  Score=89.06  Aligned_cols=56  Identities=23%  Similarity=0.272  Sum_probs=41.5

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.++++.++++|+++.-+ +++++ |+..  +|+  ++.++ .||+|+|.--.+.++..+|+
T Consensus       213 ~~~GV~i~~~~~v~~i~~~-~~~v~-v~~~--~g~--~i~aD-~Vv~a~G~~p~~~l~~~~gl  268 (472)
T 3iwa_A          213 EKNDVVVHTGEKVVRLEGE-NGKVA-RVIT--DKR--TLDAD-LVILAAGVSPNTQLARDAGL  268 (472)
T ss_dssp             HHTTCEEECSCCEEEEEES-SSBEE-EEEE--SSC--EEECS-EEEECSCEEECCHHHHHHTC
T ss_pred             HhcCCEEEeCCEEEEEEcc-CCeEE-EEEe--CCC--EEEcC-EEEECCCCCcCHHHHHhCCc
Confidence            4679999999999999875 44554 5554  465  56674 79999998765567777775

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.88  E-value=1.2e-05  Score=86.97  Aligned_cols=34  Identities=18%  Similarity=0.426  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +||++|||||+||+.+|.+|++. |.+|.++|+++
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~-g~~v~vie~~~   36 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRS-GLSYVILDAEA   36 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHS-SCCEEEECCSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCC
Confidence            58999999999999999999986 89999999875

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.86  E-value=4e-05  Score=92.14  Aligned_cols=36  Identities=25%  Similarity=0.381  Sum_probs=31.0

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+||+||||||++|+++|..|++. |.+|.|+|+.+.
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~-G~~V~VlEr~~~   83 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAG-GVGALVLEKLVE   83 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHT-TCCEEEEBSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCC
Confidence            469999999999999999999986 999999999864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.78  E-value=0.00013  Score=83.78  Aligned_cols=36  Identities=31%  Similarity=0.374  Sum_probs=32.3

Q ss_pred             cccEEEECCCchHHHHHHHHhc--cCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSE--dpg~sVLVLEAG~d  197 (1381)
                      ..|++|||||.||..+|.+|++  +++.+|.++|+++.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            4699999999999999999997  25899999999974

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.76  E-value=3.9e-05  Score=84.57  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=31.0

Q ss_pred             ccEEEECCCchHHHHHHHHhcc--CCCeEEEEeccC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGG  196 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEd--pg~sVLVLEAG~  196 (1381)
                      +|++|||||.+|+++|.+|+++  .|.+|.|+|+++
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            6999999999999999999972  589999999985

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=97.73  E-value=6.8e-06  Score=90.65  Aligned_cols=39  Identities=33%  Similarity=0.394  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhc-cCCCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSE-dpg~sVLVLEAG~d  197 (1381)
                      +..++|++|||||+||.++|.+|++ ++|.+|+++|+++.
T Consensus        62 ~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~  101 (326)
T 3fpz_A           62 KFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             HTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             hccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            3457999999999999999999996 47999999999864

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.72  E-value=4.2e-05  Score=88.18  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             ccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      +|+||||||+||..+|.++++. ++.+|.++|+++.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN   36 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            6999999999999999999975 6899999999875

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.71  E-value=3.6e-05  Score=88.39  Aligned_cols=36  Identities=28%  Similarity=0.423  Sum_probs=31.9

Q ss_pred             cccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      ++|++|||||.+|+++|.+|+++ ++++|.|+|+.+.
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~   40 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER   40 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            58999999999999999999986 2399999999754

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.68  E-value=0.0001  Score=86.66  Aligned_cols=56  Identities=18%  Similarity=0.328  Sum_probs=41.5

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.++++.++++|+++.-+ ++++ +|+..  +|+  ++.++ .||+|+|..-+..++..+|+
T Consensus       237 ~~~GV~v~~~~~V~~i~~~-~~~~-~v~l~--dG~--~i~aD-~Vv~a~G~~pn~~l~~~~gl  292 (493)
T 1m6i_A          237 RREGVKVMPNAIVQSVGVS-SGKL-LIKLK--DGR--KVETD-HIVAAVGLEPNVELAKTGGL  292 (493)
T ss_dssp             HTTTCEEECSCCEEEEEEE-TTEE-EEEET--TSC--EEEES-EEEECCCEEECCTTHHHHTC
T ss_pred             HhcCCEEEeCCEEEEEEec-CCeE-EEEEC--CCC--EEECC-EEEECCCCCccHHHHHHcCC
Confidence            4679999999999999765 3333 55543  565  46674 79999998866667877876

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.68  E-value=0.00014  Score=84.07  Aligned_cols=36  Identities=28%  Similarity=0.362  Sum_probs=32.6

Q ss_pred             ccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  198 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~  198 (1381)
                      .|++|||||+||..+|.+|++. ++.+|.++|+++..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5999999999999999999974 68999999999853

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.66  E-value=0.00018  Score=82.88  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=33.2

Q ss_pred             cccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  198 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~  198 (1381)
                      ++|++|||||+||..+|.+|++. ++.+|.++|++++.
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            47999999999999999999975 58899999999853

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.65  E-value=4.2e-05  Score=86.65  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=31.2

Q ss_pred             ccEEEECCCchHHHHHHHHhc-c-CCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSE-V-SSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSE-d-pg~sVLVLEAG~d  197 (1381)
                      .|++|||||.||+.+|.+|++ . ++.+|.++|+++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            389999999999999999997 1 4899999999974

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.64  E-value=7.7e-05  Score=93.16  Aligned_cols=37  Identities=32%  Similarity=0.442  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+.+|++|||||.||..+|.+|+++ |++|.|+|+++.
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~  370 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNF-GIKVTVLEAKDR  370 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEecccc
Confidence            3468999999999999999999986 899999999864

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.64  E-value=2.5e-05  Score=89.95  Aligned_cols=39  Identities=18%  Similarity=0.429  Sum_probs=35.1

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      +.++|+||||||.||+++|.+|+++.|++|+|+||.+..
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~   46 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP   46 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence            457999999999999999999998679999999998754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.63  E-value=0.00016  Score=81.53  Aligned_cols=56  Identities=13%  Similarity=0.185  Sum_probs=40.4

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.++++.++++|+++.-+ ++ ...|+.  .+|+  +++++ .||+|+|.--...++..+|+
T Consensus       198 ~~~gv~i~~~~~v~~i~~~-~~-~~~v~~--~~g~--~i~~d-~vv~a~G~~p~~~l~~~~g~  253 (384)
T 2v3a_A          198 EGLGVRFHLGPVLASLKKA-GE-GLEAHL--SDGE--VIPCD-LVVSAVGLRPRTELAFAAGL  253 (384)
T ss_dssp             HTTTCEEEESCCEEEEEEE-TT-EEEEEE--TTSC--EEEES-EEEECSCEEECCHHHHHTTC
T ss_pred             HHcCCEEEeCCEEEEEEec-CC-EEEEEE--CCCC--EEECC-EEEECcCCCcCHHHHHHCCC
Confidence            4679999999999999865 33 234444  2564  46674 69999998765567777776

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.59  E-value=8.2e-05  Score=83.78  Aligned_cols=56  Identities=14%  Similarity=0.077  Sum_probs=38.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      ++.+.++.++++|+++.-++++  ..|+.  .+|+  ++.++ .|+++.|.- -|.++..||+.
T Consensus       213 ~~~gi~v~~~~~v~~v~~~~~~--~~v~~--~~g~--~i~~D-~vi~~~g~~-~~~~~~~~gl~  268 (401)
T 3vrd_B          213 ENALIEWHPGPDAAVVKTDTEA--MTVET--SFGE--TFKAA-VINLIPPQR-AGKIAQSASLT  268 (401)
T ss_dssp             TTCSEEEECTTTTCEEEEETTT--TEEEE--TTSC--EEECS-EEEECCCEE-ECHHHHHTTCC
T ss_pred             HhcCcEEEeCceEEEEEecccc--eEEEc--CCCc--EEEee-EEEEecCcC-CchhHhhcccc
Confidence            5678999999999998876222  22333  2565  46664 688888854 34688899874

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.55  E-value=5.5e-05  Score=96.31  Aligned_cols=63  Identities=14%  Similarity=0.103  Sum_probs=48.2

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe--c---CCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN--S---KGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd--~---~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      ++.++++.++++|++|.-++++++++|++.+  .   +|++.++.++ .||+|+|..-+.+++..+|.+
T Consensus       327 ~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D-~Vv~a~G~~P~~~l~~~~~g~  394 (965)
T 2gag_A          327 VADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEAD-VLAVAGGFNPVVHLHSQRQGK  394 (965)
T ss_dssp             HHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECS-EEEEECCEEECCHHHHHTTCC
T ss_pred             HhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcC-EEEECCCcCcChHHHHhCCCc
Confidence            4568999999999999763246788999875  2   2555778885 799999987777788777643

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.54  E-value=4.9e-05  Score=82.40  Aligned_cols=35  Identities=43%  Similarity=0.508  Sum_probs=32.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .+||++|||||+||..+|.++++. |++|.++|++.
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~-g~~V~liE~~~   39 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRA-NLKTVMIERGI   39 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence            469999999999999999999975 99999999874

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.54  E-value=9.8e-05  Score=86.16  Aligned_cols=37  Identities=24%  Similarity=0.377  Sum_probs=32.7

Q ss_pred             cccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  198 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~  198 (1381)
                      .+|++|||||+||..+|.++++. ++.+|.++|+++..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            47999999999999999999975 68999999998753

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.53  E-value=9e-05  Score=84.65  Aligned_cols=56  Identities=18%  Similarity=0.152  Sum_probs=43.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.|+++.++++|+++.-+  +++++|+..|  |+  ++.+ +.||+|.|..-...++..+|+
T Consensus       196 ~~~GV~i~~~~~v~~i~~~--~~~~~v~~~d--g~--~i~a-D~Vv~a~G~~p~~~l~~~~gl  251 (410)
T 3ef6_A          196 TELGVQVELGTGVVGFSGE--GQLEQVMASD--GR--SFVA-DSALICVGAEPADQLARQAGL  251 (410)
T ss_dssp             HHHTCEEECSCCEEEEECS--SSCCEEEETT--SC--EEEC-SEEEECSCEEECCHHHHHTTC
T ss_pred             HHCCCEEEeCCEEEEEecc--CcEEEEEECC--CC--EEEc-CEEEEeeCCeecHHHHHhCCC
Confidence            4679999999999999754  3566777654  65  4667 479999998877778888886

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.52  E-value=5.5e-05  Score=85.32  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=32.7

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ..++||++|||||+||+++|..|++. |.+|.|+|+.+.
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~-G~~V~v~E~~~~   57 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQS-GIDCDVYEAVKE   57 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            44679999999999999999999986 999999999863

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.50  E-value=5.5e-05  Score=82.18  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=31.7

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ..++||++|||||+||.++|.++++. |++|.++|++.
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~-g~~v~lie~~~   39 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRA-RKQIALFDNNT   39 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSC
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            34679999999999999999999975 99999999874

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.43  E-value=0.00015  Score=85.50  Aligned_cols=57  Identities=21%  Similarity=0.204  Sum_probs=38.6

Q ss_pred             hcchhhhcCCCCeEEEcCcEEEEEEecC-CC-----eEEEEEEEec-CCeEEEEecCcEEEEcCCc
Q psy11618        367 AYLTPIAGKRTNLYVLKRSKVTKVIIND-QN-----VATGVEYVNS-KGETVRVTANKEVILTAGA  425 (1381)
Q Consensus       367 AYL~Pa~~~R~NLtILTnA~VtRIlfd~-g~-----RAtGVE~vd~-~Gr~~tV~ArKEVILSAGA  425 (1381)
                      .|++.++ ++=+.+|..|++|++|..++ ++     ..--|+..+. +|++.+.+| |.||+|.|.
T Consensus       149 ~Yl~~~A-~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~a-r~vVlatG~  212 (501)
T 4b63_A          149 DYMRWCA-QQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRT-RKVVIAIGG  212 (501)
T ss_dssp             HHHHHHH-HTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEE-EEEEECCCC
T ss_pred             HHHHHHH-HHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEe-CEEEECcCC
Confidence            5666555 44455688999999998862 11     2345555553 577788888 479999993

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.40  E-value=0.00027  Score=80.80  Aligned_cols=53  Identities=23%  Similarity=0.290  Sum_probs=40.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIG  438 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIG  438 (1381)
                      ++.++++.++++|+++. + +    +|+..  +|+  ++.+ +.||+|+|.--+..++..+|+-
T Consensus       198 ~~~GV~i~~~~~v~~i~-~-~----~v~~~--~g~--~i~~-D~vi~a~G~~p~~~l~~~~gl~  250 (408)
T 2gqw_A          198 AAQGVDLRFERSVTGSV-D-G----VVLLD--DGT--RIAA-DMVVVGIGVLANDALARAAGLA  250 (408)
T ss_dssp             HHTTCEEEESCCEEEEE-T-T----EEEET--TSC--EEEC-SEEEECSCEEECCHHHHHHTCC
T ss_pred             HHcCcEEEeCCEEEEEE-C-C----EEEEC--CCC--EEEc-CEEEECcCCCccHHHHHhCCCC
Confidence            46799999999999998 5 3    55553  464  4667 4799999987666688888863

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.26  E-value=0.00065  Score=80.20  Aligned_cols=36  Identities=25%  Similarity=0.464  Sum_probs=32.4

Q ss_pred             ccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  198 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~  198 (1381)
                      .|++|||||+||..+|.+|++. ++.+|.++|+++..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            4899999999999999999975 58999999999764

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.26  E-value=0.00015  Score=82.95  Aligned_cols=38  Identities=26%  Similarity=0.452  Sum_probs=34.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      +++|++|||||.||+++|.+|++++|++|+|+|+++..
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            46999999999999999999998668999999999753

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.25  E-value=0.0002  Score=79.46  Aligned_cols=36  Identities=14%  Similarity=0.160  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .+++|++|||||.+|+.+|.+|+++ |++|.|+|+++
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~-G~~V~vle~~~   39 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARK-GYSVHILARDL   39 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC-CCEEEEEeccC
Confidence            3568999999999999999999986 89999999985

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.19  E-value=0.00019  Score=83.69  Aligned_cols=36  Identities=25%  Similarity=0.547  Sum_probs=31.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+||++|||||+||.++|.++++. |++|.++|+++.
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~~   59 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQL-GMKVAVVEKRST   59 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence            469999999999999999999985 899999998653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.14  E-value=0.00019  Score=83.31  Aligned_cols=37  Identities=19%  Similarity=0.438  Sum_probs=33.1

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ...+||++|||||+||..+|.++++. |.+|.++|++.
T Consensus        17 ~~~~~dVvIIGgG~aGl~aA~~la~~-G~~V~liE~~~   53 (478)
T 3dk9_A           17 AVASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHK   53 (478)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence            34579999999999999999999986 89999999764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.13  E-value=0.00026  Score=79.56  Aligned_cols=36  Identities=25%  Similarity=0.466  Sum_probs=32.8

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|++|||||+||+++|..|++. |.+|.|+|+++.
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~-G~~V~viE~~~~   40 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQARR   40 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCC
Confidence            469999999999999999999986 999999999853

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.13  E-value=0.00025  Score=80.32  Aligned_cols=35  Identities=43%  Similarity=0.620  Sum_probs=32.3

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +||++|||||.||+++|.+|+++ |++|+|+|+++.
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~   35 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNH   35 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCC
Confidence            48999999999999999999986 899999999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.13  E-value=0.00025  Score=82.70  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=31.7

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      .+||+||||||+||.++|.++++. |++|.++|++
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~-G~~V~liEk~   58 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGAL-GKRVAIAEEY   58 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-cCEEEEEeCC
Confidence            469999999999999999999986 8999999994

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.12  E-value=0.00032  Score=79.18  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=33.0

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|++|||||+||+++|..|++. |.+|.|+|+.+.
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   60 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQN-GIDVSVYERDND   60 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTT-TCEEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            568999999999999999999975 999999999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.10  E-value=0.00026  Score=82.07  Aligned_cols=35  Identities=37%  Similarity=0.562  Sum_probs=32.7

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++||++|||||+||.++|.++++. |++|.++|+++
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~   36 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYK   36 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence            469999999999999999999986 89999999986

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.08  E-value=0.00028  Score=80.24  Aligned_cols=37  Identities=35%  Similarity=0.671  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~  196 (1381)
                      .+++|++|||||.+|+.+|.+|+++ ||.+|.|+|++.
T Consensus        34 ~~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~   71 (405)
T 3c4n_A           34 EEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG   71 (405)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred             cCcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            3569999999999999999999985 589999999984

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=97.04  E-value=0.00036  Score=73.73  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=32.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++||++|||||++|+.+|.+|++. +.+|.++|++.
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~-g~~v~lie~~~   36 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQK-GVRVGLLTQSL   36 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence            359999999999999999999986 89999999983

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.03  E-value=0.00038  Score=77.91  Aligned_cols=36  Identities=22%  Similarity=0.189  Sum_probs=32.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|++|||||+||+++|..|++. |.+|.|+|+++.
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~-G~~v~viE~~~~   45 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQN-GWDVRLHEKSSE   45 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence            358999999999999999999976 899999999864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=96.99  E-value=0.00043  Score=80.30  Aligned_cols=38  Identities=39%  Similarity=0.622  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ..+++|++|||||.||+++|.+|+++ |++|+|+|+++.
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~-g~~v~v~E~~~~   63 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPH   63 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHC-CCceEEEeccCC
Confidence            34579999999999999999999986 899999999865

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=96.95  E-value=0.00058  Score=80.60  Aligned_cols=38  Identities=29%  Similarity=0.405  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ..+++|++|||||++|+++|..|++. |.+|.|+|+.+.
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~-G~~v~vlE~~~~   45 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLA-GVEVVVLERLVE   45 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCCC
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            45679999999999999999999985 999999999864

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.92  E-value=0.00052  Score=79.52  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=31.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      .+||++|||||+||..+|.++++. |++|.++|++
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~-G~~V~liEk~   37 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAAL-GKKVAIAEEF   37 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhC-CCEEEEEeCC
Confidence            469999999999999999999986 9999999994

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.92  E-value=0.00056  Score=74.37  Aligned_cols=60  Identities=18%  Similarity=0.190  Sum_probs=44.5

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.++++.++++|+++.-+  +++.+|++.+. +|++.++.++ .||+|.|.--...++..+|+
T Consensus       202 ~~~gv~v~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~~~  262 (335)
T 2zbw_A          202 EEGRLEVLTPYELRRVEGD--ERVRWAVVFHNQTQEELALEVD-AVLILAGYITKLGPLANWGL  262 (335)
T ss_dssp             HTTSSEEETTEEEEEEEES--SSEEEEEEEETTTCCEEEEECS-EEEECCCEEEECGGGGGSCC
T ss_pred             ccCCeEEecCCcceeEccC--CCeeEEEEEECCCCceEEEecC-EEEEeecCCCCchHhhhcce
Confidence            4669999999999999764  56778988753 5766778884 79999997655445554443

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=96.92  E-value=0.00059  Score=80.52  Aligned_cols=38  Identities=29%  Similarity=0.382  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++++|++|||||++|+++|..|++. |.+|.|+|+.+.
T Consensus         9 ~~~~~dVlIVGaGpaGl~~A~~La~~-G~~v~vlE~~~~   46 (499)
T 2qa2_A            9 HRSDASVIVVGAGPAGLMLAGELRLG-GVDVMVLEQLPQ   46 (499)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence            45679999999999999999999985 999999999864

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=96.91  E-value=0.00045  Score=77.26  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++|++|||||+||+++|..|++. |.+|.|+|+.+
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            48999999999999999999986 89999999975

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.90  E-value=0.00059  Score=79.49  Aligned_cols=55  Identities=18%  Similarity=0.181  Sum_probs=40.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQL  431 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPqL  431 (1381)
                      ++.++++.++++|+++.-+++++ ..|++.+. +|++.++.++ .||+|.|.--....
T Consensus       238 ~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~~~~~~~~~~~~D-~vi~a~G~~p~~~~  293 (483)
T 3dgh_A          238 EERGIPFLRKTVPLSVEKQDDGK-LLVKYKNVETGEESEDVYD-TVLWAIGRKGLVDD  293 (483)
T ss_dssp             HHTTCCEEETEEEEEEEECTTSC-EEEEEEETTTCCEEEEEES-EEEECSCEEECCGG
T ss_pred             HhCCCEEEeCCEEEEEEEcCCCc-EEEEEecCCCCceeEEEcC-EEEECcccccCcCc
Confidence            46799999999999998753333 35777764 3566778885 79999996544333

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=96.90  E-value=0.00068  Score=80.70  Aligned_cols=38  Identities=29%  Similarity=0.427  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCchHHHHHHHHhcc--CCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEd--pg~sVLVLEAG~d  197 (1381)
                      .+.+|++|||||+||+++|..|++.  +|.+|.|+|+.+.
T Consensus        23 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           23 GKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            3579999999999999999999972  4899999999753

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.89  E-value=0.00057  Score=72.35  Aligned_cols=34  Identities=41%  Similarity=0.637  Sum_probs=31.3

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +||++|||||+||+.+|.+|++. +.+|.++|+++
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRA-RKNILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence            48999999999999999999986 89999999875

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=96.88  E-value=0.00074  Score=79.84  Aligned_cols=37  Identities=30%  Similarity=0.405  Sum_probs=32.6

Q ss_pred             CcccEEEECCCchHHHHHHHHhcc--CCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEd--pg~sVLVLEAG~d  197 (1381)
                      +.+|+||||||+||+.+|..|++.  +|.+|.|+|+++.
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   42 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI   42 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            468999999999999999999972  4899999999653

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.87  E-value=0.00067  Score=76.58  Aligned_cols=36  Identities=25%  Similarity=0.262  Sum_probs=32.6

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|++|||||+||+++|..|++. |.+|.|+|+.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDA-GVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence            458999999999999999999975 999999999854

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=96.86  E-value=0.00062  Score=77.14  Aligned_cols=35  Identities=31%  Similarity=0.466  Sum_probs=32.1

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCe-EEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLK-VLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~s-VLVLEAG~d  197 (1381)
                      ++|++|||||+||+++|..|++. |.+ |.|+|+.+.
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~   39 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSE   39 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCCC
Confidence            58999999999999999999986 899 999999753

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=96.86  E-value=0.00067  Score=76.66  Aligned_cols=37  Identities=22%  Similarity=0.251  Sum_probs=33.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCC-CeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg-~sVLVLEAG~d~  198 (1381)
                      +++|++|||||.||.++|.+|+++ | ++|.|+|+.+..
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~-g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQA-GFHDYTILERTDHV   42 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEECCCCC
Confidence            468999999999999999999986 7 899999997653

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=96.83  E-value=0.00054  Score=78.12  Aligned_cols=36  Identities=36%  Similarity=0.411  Sum_probs=32.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|+||||||.||.++|.+|+++ |++|.|+|+++.
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~   39 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDR   39 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEECCCC
Confidence            468999999999999999999986 899999999864

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.82  E-value=0.00053  Score=80.51  Aligned_cols=35  Identities=31%  Similarity=0.393  Sum_probs=32.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .+||++|||||+||.++|.++++. |.+|.++|+++
T Consensus         7 ~~~DvvVIGgG~aGl~aA~~la~~-G~~V~liE~~~   41 (492)
T 3ic9_A            7 INVDVAIIGTGTAGMGAYRAAKKH-TDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT-CSCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence            359999999999999999999975 99999999975

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=96.81  E-value=0.00078  Score=67.50  Aligned_cols=34  Identities=35%  Similarity=0.618  Sum_probs=31.5

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .||++|||||++|+.+|..+++. +.+|.++|+++
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~-g~~v~lie~~~   34 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARA-GLKVLVLDGGR   34 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            38999999999999999999986 89999999986

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.81  E-value=0.00082  Score=78.49  Aligned_cols=36  Identities=19%  Similarity=0.412  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ..+||++|||||+||.++|.++++. |.+|.++|+++
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~-G~~V~liEk~~   39 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQL-GKKVAVADYVE   39 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEEecc
Confidence            3569999999999999999999986 89999999854

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=96.81  E-value=0.00078  Score=77.96  Aligned_cols=36  Identities=28%  Similarity=0.499  Sum_probs=32.7

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|+||||||.||.++|.+|+++ |++|.|+|+.+.
T Consensus        38 ~~~~v~iiGaG~aGl~aA~~l~~~-g~~v~v~E~~~~   73 (495)
T 2vvm_A           38 GPWDVIVIGGGYCGLTATRDLTVA-GFKTLLLEARDR   73 (495)
T ss_dssp             CCEEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSB
T ss_pred             cCCCEEEECCcHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            459999999999999999999986 899999999754

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=96.79  E-value=0.00072  Score=74.64  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=30.4

Q ss_pred             cEEEECCCchHHHHHHHHhcc-----CCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEV-----SSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEd-----pg~sVLVLEAG~  196 (1381)
                      |+||||||.+|+.+|.+|+|+     |+.+|.|+|++.
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            999999999999999999987     248999999985

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=96.78  E-value=0.00063  Score=78.30  Aligned_cols=35  Identities=29%  Similarity=0.176  Sum_probs=31.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++|++|||||+||+++|..|++. |.+|.|+|+++
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~-G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQH-DVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHT-TCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence            348999999999999999999986 99999999985

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=96.78  E-value=0.0008  Score=80.14  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=33.0

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++|++|||||+||+++|..|++. |.+|.|+|+.+.
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~-G~~V~vlEr~~~   60 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHR-QVGHLVVEQTDG   60 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            469999999999999999999985 999999999864

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=96.77  E-value=0.00091  Score=77.30  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=33.7

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .+++|++|||||.||+++|.+|+++ |++|.|+|+++..
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~-g~~v~v~E~~~~~   46 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKA-GYKVTVLEARTRP   46 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeccCCC
Confidence            3468999999999999999999975 8999999998753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=96.77  E-value=0.0007  Score=78.64  Aligned_cols=35  Identities=31%  Similarity=0.603  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +||++|||||+||.++|.++++. |.+|.++|+.+.
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~-G~~V~liEk~~~   38 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKA-KYNVLMADPKGE   38 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECTTSS
T ss_pred             cceEEEECCCHHHHHHHHHHHhC-CCeEEEEECCCC
Confidence            69999999999999999999976 999999996543

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=96.75  E-value=0.00076  Score=78.93  Aligned_cols=36  Identities=28%  Similarity=0.507  Sum_probs=32.7

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|+||||||.||.++|.+|+++ |++|.|+||.+.
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~-G~~V~vlE~~~~   38 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDR   38 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            458999999999999999999986 899999999764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=96.75  E-value=0.00077  Score=82.95  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=32.4

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++||+||||||.||+.+|.++++. |.+|+++|+++
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARM-GQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhC-CCCEEEEeecc
Confidence            569999999999999999999975 99999999984

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.74  E-value=0.00089  Score=79.21  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ..+||++|||||+||.++|.++++. |.+|.++|+++
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~-G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQY-GKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeccC
Confidence            3569999999999999999999986 89999999964

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.74  E-value=0.00064  Score=77.99  Aligned_cols=36  Identities=36%  Similarity=0.490  Sum_probs=32.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCC-----CeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSS-----LKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg-----~sVLVLEAG~d  197 (1381)
                      +.||++|||||+||..+|.+|++. +     .+|.++|+++.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~-g~~~~~~~v~liE~~~~   69 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQER-AQAQGALEVLFLDKQGD   69 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHH-HHHHCCCCEEEEESCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhc-ccccCcccEEEEecCCC
Confidence            579999999999999999999986 5     89999999874

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=96.71  E-value=0.00075  Score=79.17  Aligned_cols=36  Identities=31%  Similarity=0.377  Sum_probs=32.8

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCC-CeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg-~sVLVLEAG~d  197 (1381)
                      +++|+||||||.||.++|.+|+++ | ++|.|+||.+.
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~-G~~~V~VlEa~~r   43 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQN-GIQDCLVLEARDR   43 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHT-TCCSEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCCC
Confidence            468999999999999999999976 7 99999999864

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.70  E-value=0.0015  Score=77.54  Aligned_cols=35  Identities=14%  Similarity=0.268  Sum_probs=30.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++..+||||||.||..+|.+|+++ +.+|.+||+-+
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~-~~~VtLId~~~   75 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTK-KYNVSIISPRS   75 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTT-TCEEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhC-CCcEEEECCCC
Confidence            345799999999999999999864 88999999865

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.70  E-value=0.00093  Score=73.49  Aligned_cols=34  Identities=32%  Similarity=0.571  Sum_probs=31.4

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCC-eEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~-sVLVLEAG~  196 (1381)
                      +||++|||||+||..+|.+|++. |. +|.++|+++
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~-g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDF-GITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHc-CCCcEEEEecCC
Confidence            68999999999999999999975 77 999999985

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=96.68  E-value=0.00097  Score=76.37  Aligned_cols=34  Identities=24%  Similarity=0.443  Sum_probs=31.3

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCC--eEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSL--KVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~--sVLVLEAG~d  197 (1381)
                      +|++|||||.||+++|.+|+++ |+  +|.|+||++.
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~-G~~~~V~vlEa~~~   38 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRA-PCPPKVVLVESSER   38 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTS-SSCCEEEEECSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhC-CCCCcEEEEeCCCC
Confidence            6999999999999999999986 77  9999999764

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.68  E-value=0.00099  Score=76.99  Aligned_cols=36  Identities=31%  Similarity=0.503  Sum_probs=32.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ++||++|||||+||..+|.++++. |++|.++|+++.
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~-g~~V~liE~~~~   40 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGA   40 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            469999999999999999999986 899999999864

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=96.67  E-value=0.00073  Score=78.89  Aligned_cols=36  Identities=31%  Similarity=0.496  Sum_probs=30.0

Q ss_pred             cccEEEECCCchHHHHHHHHhcc--CCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEd--pg~sVLVLEAG~d  197 (1381)
                      .+|+||||||+||+++|..|++.  +|.+|.|+|+++.
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            37999999999999999999971  3899999999753

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=96.66  E-value=0.001  Score=74.72  Aligned_cols=35  Identities=26%  Similarity=0.528  Sum_probs=31.8

Q ss_pred             cEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~  198 (1381)
                      |++|||||+||+++|..|++. ||.+|.|+|+.+..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            899999999999999999975 69999999998653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.66  E-value=0.0011  Score=76.94  Aligned_cols=59  Identities=15%  Similarity=0.168  Sum_probs=39.8

Q ss_pred             CCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHH--HHHcCC
Q psy11618        376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQL--LLLSGI  437 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqL--LmlSGI  437 (1381)
                      +.++++.++++|+++.-+ +++ +.|++.+.+|++.++.++ .||+|+|.--+..+  +..+|+
T Consensus       228 ~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~~~g~~~~i~~D-~vv~a~G~~p~~~~l~l~~~gl  288 (468)
T 2qae_A          228 NEKMKFMTSTKVVGGTNN-GDS-VSLEVEGKNGKRETVTCE-ALLVSVGRRPFTGGLGLDKINV  288 (468)
T ss_dssp             HTCCEEECSCEEEEEEEC-SSS-EEEEEECC---EEEEEES-EEEECSCEEECCTTSCHHHHTC
T ss_pred             cCCcEEEeCCEEEEEEEc-CCe-EEEEEEcCCCceEEEECC-EEEECCCcccCCCCCCchhcCC
Confidence            568999999999999865 333 456655324655678885 79999997755555  555665

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.65  E-value=0.0012  Score=78.55  Aligned_cols=38  Identities=34%  Similarity=0.524  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ..+++|++|||||.||..+|.+|++. |.+|.++|++++
T Consensus        13 ~~~~~dVvIIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~   50 (542)
T 1w4x_A           13 PPEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGD   50 (542)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            34579999999999999999999986 899999999864

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=96.65  E-value=0.0017  Score=79.00  Aligned_cols=37  Identities=27%  Similarity=0.512  Sum_probs=33.0

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|++|||||+||+++|..|++..|.+|.|+|+.+.
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~   67 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEG   67 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            5799999999999999999999713999999999864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=96.63  E-value=0.0011  Score=76.70  Aligned_cols=35  Identities=31%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++||++|||||+||..+|.++++ .|++|.++|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAM-YGQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT-TTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh-CCCeEEEEcCCC
Confidence            46999999999999999999997 499999999974

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=96.63  E-value=0.00099  Score=81.84  Aligned_cols=36  Identities=36%  Similarity=0.573  Sum_probs=32.4

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++||+||||||.||+.+|.++++. |.+|+++|+++
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~~   54 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARG-GLHCLLITSDL   54 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEecc
Confidence            3569999999999999999999976 89999999874

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=96.63  E-value=0.0011  Score=78.25  Aligned_cols=36  Identities=36%  Similarity=0.502  Sum_probs=32.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhcc-----------CCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEV-----------SSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEd-----------pg~sVLVLEAG~  196 (1381)
                      +.+|++|||||+||+++|..|++.           +|.+|.|+|+.+
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            458999999999999999999981           589999999864

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=96.63  E-value=0.0013  Score=77.56  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ...+|++|||||+||+.+|..|++. |.+|.++|+++.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~-G~~V~liEk~~~  126 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALL-GARVVLVEKRIK  126 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCSS
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHC-CCeEEEEEeccc
Confidence            3568999999999999999999976 899999999863

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=96.62  E-value=0.0012  Score=76.52  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .+++|++|||||.||.++|.+|+++ |++|.|+|+.+..
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~   48 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKA   48 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCC
Confidence            3468999999999999999999976 8999999998753

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=96.62  E-value=0.001  Score=81.75  Aligned_cols=35  Identities=23%  Similarity=0.390  Sum_probs=32.4

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++||+||||||.||+.+|..+++. |.+|+++|+++
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~-G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARM-GAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCCEEEEEecc
Confidence            469999999999999999999985 89999999985

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.0011  Score=77.31  Aligned_cols=35  Identities=29%  Similarity=0.537  Sum_probs=32.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++||++|||||+||..+|.++++. |++|.++|+++
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~-g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASY-GAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-SCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            469999999999999999999985 99999999974

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.60  E-value=0.0012  Score=76.33  Aligned_cols=35  Identities=29%  Similarity=0.555  Sum_probs=32.1

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +||++|||||+||..+|.++++. |++|.++|+++.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~~   35 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQL-GMKVGVVEKEKA   35 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            48999999999999999999986 899999999853

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=96.59  E-value=0.0011  Score=79.68  Aligned_cols=35  Identities=20%  Similarity=0.367  Sum_probs=31.8

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +||+||||||+||-++|.|.++. |+||.++|++..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~-G~kValIE~~~~   76 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAH-GARVLLFDYVKP   76 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT-TCCEEEECCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecccc
Confidence            59999999999999999999975 999999998653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.58  E-value=0.0012  Score=76.73  Aligned_cols=36  Identities=25%  Similarity=0.516  Sum_probs=32.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ++||++|||||+||..+|.++++. |.+|.++|+++.
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~   39 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGK   39 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence            469999999999999999999986 899999999643

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=96.56  E-value=0.0013  Score=76.57  Aligned_cols=35  Identities=29%  Similarity=0.524  Sum_probs=32.0

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++||++|||||+||..+|.++++ .|++|.++|++.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAA-FGKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence            46999999999999999999997 499999999973

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=96.55  E-value=0.0013  Score=76.32  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=32.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+||++|||||+||..+|.++++. |.+|.++|+++.
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~~   40 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQL-GFKTVCIEKNET   40 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence            469999999999999999999986 899999999864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=96.53  E-value=0.0013  Score=76.83  Aligned_cols=36  Identities=22%  Similarity=0.398  Sum_probs=32.4

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+||+||||||+||..+|.++++. |++|.++|+.+.
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~-G~~V~liE~~~~   40 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKT   40 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence            369999999999999999999975 899999999653

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.50  E-value=0.0015  Score=76.78  Aligned_cols=34  Identities=29%  Similarity=0.559  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +||++|||||+||..+|.++++. |++|.++|+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARH-NAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            48999999999999999999985 89999999985

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=96.49  E-value=0.0018  Score=73.88  Aligned_cols=36  Identities=31%  Similarity=0.482  Sum_probs=32.5

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ++|++|||||.+|+++|.+|+++ |++|.|+|+++..
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~~   38 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHI   38 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEEecCCc
Confidence            47999999999999999999976 8999999998653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=96.48  E-value=0.0017  Score=75.13  Aligned_cols=35  Identities=26%  Similarity=0.349  Sum_probs=32.0

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++||++|||||+||..+|.++++. |.+|.++|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~~   37 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERGT   37 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence            468999999999999999999975 89999999983

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.48  E-value=0.0014  Score=75.61  Aligned_cols=34  Identities=32%  Similarity=0.475  Sum_probs=31.6

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      .+||++|||||+||..+|.++++. |++|.++|++
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~   35 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKG   35 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            358999999999999999999986 8999999997

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.46  E-value=0.0012  Score=77.50  Aligned_cols=56  Identities=14%  Similarity=0.133  Sum_probs=42.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.++++.++++|++|.-+  +++++|+.  .+|+  +++++ .||+|+|.--+.+++..+|+
T Consensus       268 ~~~GV~v~~~~~v~~i~~~--~~v~~v~~--~~g~--~i~aD-~Vv~a~G~~p~~~l~~~~g~  323 (493)
T 1y56_A          268 ERWGIDYVHIPNVKRVEGN--EKVERVID--MNNH--EYKVD-ALIFADGRRPDINPITQAGG  323 (493)
T ss_dssp             HHHTCEEEECSSEEEEECS--SSCCEEEE--TTCC--EEECS-EEEECCCEEECCHHHHHTTC
T ss_pred             HhCCcEEEeCCeeEEEecC--CceEEEEe--CCCe--EEEeC-EEEECCCcCcCchHHHhcCC
Confidence            3568999999999999744  34566663  2464  56674 79999998877778888886

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.45  E-value=0.002  Score=74.20  Aligned_cols=36  Identities=33%  Similarity=0.406  Sum_probs=32.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCC--eEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSL--KVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~--sVLVLEAG~d  197 (1381)
                      +.+|++|||||+||.++|.+|++. |.  +|.++|++++
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~-G~~~~V~v~E~~~~   42 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAE-KAFDQVTLFERRGS   42 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT-TCCSEEEEECSSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhc-CCCCCeEEEecCCC
Confidence            458999999999999999999975 77  9999999854

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.41  E-value=0.0016  Score=75.69  Aligned_cols=34  Identities=24%  Similarity=0.418  Sum_probs=31.4

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      .+||++|||||+||..+|.++++. |++|.++|++
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~   37 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQ   37 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH-TCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEccC
Confidence            469999999999999999999986 8999999994

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.40  E-value=0.0027  Score=77.78  Aligned_cols=37  Identities=32%  Similarity=0.427  Sum_probs=33.7

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+++|++|||||+||..+|.++++. |++|.++|+++.
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~-G~~V~liE~~~~  425 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVR-GYDVVLAEAGRD  425 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence            4569999999999999999999987 999999999864

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=96.40  E-value=0.0018  Score=75.94  Aligned_cols=33  Identities=18%  Similarity=0.411  Sum_probs=30.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhc-cCCCeEEEEec
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEA  194 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSE-dpg~sVLVLEA  194 (1381)
                      ++||++|||||+||..+|.++++ . |++|.++|+
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE~   35 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLH-KKRVAVIDL   35 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEES
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHc-CCEEEEEec
Confidence            36999999999999999999997 5 899999994

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=96.38  E-value=0.0022  Score=75.41  Aligned_cols=38  Identities=29%  Similarity=0.298  Sum_probs=33.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      +++|++|||||.||+++|.+|+++.+.+|.|+|+++..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            46899999999999999999998733899999998753

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=96.37  E-value=0.0025  Score=70.48  Aligned_cols=32  Identities=31%  Similarity=0.473  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++|||||+||+++|..|++. |++|.|+|+.+
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~-G~~v~v~Er~~   34 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKH-GIKVTIYERNS   34 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence            589999999999999999976 99999999864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=96.36  E-value=0.0018  Score=74.90  Aligned_cols=33  Identities=27%  Similarity=0.584  Sum_probs=31.2

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      +||++|||||+||..+|.++++. |.+|.++|++
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~-G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQL-GLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCC
Confidence            58999999999999999999986 8999999997

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=96.31  E-value=0.0023  Score=74.04  Aligned_cols=36  Identities=31%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +.+|++|||||.+|..+|.+|++. |++|.|+|+.+.
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~-g~~v~vlE~~~~   67 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASER   67 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECCCC
Confidence            468999999999999999999986 899999999864

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=96.30  E-value=0.0022  Score=74.55  Aligned_cols=34  Identities=38%  Similarity=0.687  Sum_probs=31.8

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +||++|||||+||..+|.++++. |.+|.++|+++
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~-g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQL-GLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            69999999999999999999975 89999999985

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.30  E-value=0.002  Score=75.40  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=32.0

Q ss_pred             cccEEEECCCchHHHHHHHHhcc-C-CCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEV-S-SLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEd-p-g~sVLVLEAG~  196 (1381)
                      +||+||||||+||..+|.++++. | |.+|.++|+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            48999999999999999999975 3 89999999985

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=96.22  E-value=0.003  Score=77.83  Aligned_cols=38  Identities=21%  Similarity=0.377  Sum_probs=34.6

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ..+|||+|||+|-.||++|+++|++ |+||++||+.+..
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~-g~~vl~id~~~~~   43 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYY   43 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhC-CCEEEEEcCCCcc
Confidence            3479999999999999999999986 9999999999764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.21  E-value=0.0026  Score=74.91  Aligned_cols=33  Identities=18%  Similarity=0.452  Sum_probs=30.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhc-cCCCeEEEEec
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEA  194 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSE-dpg~sVLVLEA  194 (1381)
                      ++||++|||||+||..+|.++++ . |++|.++|+
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE~   39 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLY-GKRVAVVDV   39 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEES
T ss_pred             cccCEEEECCChhHHHHHHHHHHhc-CCeEEEEec
Confidence            46999999999999999999997 5 899999995

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=96.19  E-value=0.0034  Score=72.49  Aligned_cols=35  Identities=37%  Similarity=0.489  Sum_probs=32.2

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      .+.+|++|||||.||.++|.+|+++ |++|.|+|+.
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~-G~~V~VlE~~   76 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRA-GHDVTILEAN   76 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHT-SCEEEEECSC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHC-CCcEEEEecc
Confidence            3468999999999999999999986 8999999998

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.19  E-value=0.0027  Score=76.13  Aligned_cols=37  Identities=30%  Similarity=0.497  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+++|++|||||.||..+|.+|++ .|.+|.++|++++
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~-~G~~v~iiE~~~~   55 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAASG   55 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCEEEECchHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            457999999999999999999997 4889999999863

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.18  E-value=0.0028  Score=75.81  Aligned_cols=37  Identities=16%  Similarity=0.309  Sum_probs=32.8

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|++|||||.||..+|.+|+++.|.+|.++|++++
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~   43 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG   43 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCC
Confidence            4699999999999999999999335899999999864

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.14  E-value=0.0028  Score=73.23  Aligned_cols=36  Identities=36%  Similarity=0.519  Sum_probs=31.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCC-eEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~-sVLVLEAG~d  197 (1381)
                      +++|++|||||.||+++|.+|+++ |. +|.++|+++.
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~-g~~~v~~~e~~~~   39 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEA-GITDLLILEATDH   39 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhc-CCCceEEEeCCCC
Confidence            458999999999999999999986 77 8999999865

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.11  E-value=0.0033  Score=75.27  Aligned_cols=35  Identities=14%  Similarity=0.321  Sum_probs=31.8

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      .++||++|||||+||..+|.++++. |++|.++|++
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~-g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKY-GAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhC-CCeEEEEecc
Confidence            3469999999999999999999976 8999999985

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=96.07  E-value=0.005  Score=72.43  Aligned_cols=35  Identities=29%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      +|+||||||.|||.+|..+++. |++|.++|+.++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~-G~~V~liE~~~~~   36 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRL-GVPVRLFEMRPKR   36 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEECCTTTS
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCcEEEEeccCCc
Confidence            6999999999999999999975 9999999998753

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.03  E-value=0.0038  Score=76.48  Aligned_cols=38  Identities=39%  Similarity=0.545  Sum_probs=33.4

Q ss_pred             CcccEEEECCCchHHHHHHHHhcc----CCCeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEV----SSLKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEd----pg~sVLVLEAG~d~  198 (1381)
                      .++|++|||||+||+++|..|++.    .|.+|.|+|+.+..
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            468999999999999999999971    49999999998643

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.98  E-value=0.0043  Score=74.39  Aligned_cols=37  Identities=35%  Similarity=0.557  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+++|++|||||.||..+|.+|++ +|.+|.++|++++
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~-~g~~v~iiE~~~~   43 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED   43 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            346999999999999999999997 5899999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=95.83  E-value=0.0054  Score=73.23  Aligned_cols=38  Identities=26%  Similarity=0.489  Sum_probs=33.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~  198 (1381)
                      ...|++|||||+||..+|.+|++. ++.+|.++|+++..
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            457999999999999999999975 58999999999864

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=95.82  E-value=0.0053  Score=70.71  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=31.8

Q ss_pred             ccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      .|++|||||+||..+|.++++. ++.+|.++|+++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF   36 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCc
Confidence            4899999999999999999975 6899999999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=95.71  E-value=0.0073  Score=70.86  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+.+|++|||||+||..+|.+|++. |++|.++|+++.
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~-G~~V~v~e~~~~  156 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAK-GYEVHVYDRYDR  156 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence            3468999999999999999999986 899999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=95.67  E-value=0.0069  Score=70.93  Aligned_cols=36  Identities=17%  Similarity=0.341  Sum_probs=32.4

Q ss_pred             cccEEEECCCchHHHHHHHHhcc--CCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEd--pg~sVLVLEAG~d  197 (1381)
                      ++|++|||||+||..+|.++++.  ++.+|.++|+++.
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~   72 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN   72 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            58999999999999999999975  3499999999874

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=95.63  E-value=0.0066  Score=70.86  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=30.8

Q ss_pred             ccEEEECCCchHHHHHHHHhcc--CCCe---EEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEV--SSLK---VLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEd--pg~s---VLVLEAG~d  197 (1381)
                      +|++|||||+||.++|.++++.  .|.+   |.++|++++
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~   42 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQAD   42 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCC
Confidence            6999999999999999999971  3788   999999864

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.59  E-value=0.0089  Score=72.93  Aligned_cols=37  Identities=24%  Similarity=0.301  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+.+|++|||||+||..+|.++++. |++|.++|+++.
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~  407 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSE  407 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence            3468999999999999999999975 899999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=95.58  E-value=0.0092  Score=73.79  Aligned_cols=37  Identities=27%  Similarity=0.333  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+.+|++|||||+||..+|.++++. |++|.++|+++.
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~-G~~Vtlie~~~~  423 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEK  423 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            3568999999999999999999986 899999999865

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.53  E-value=0.0078  Score=68.10  Aligned_cols=36  Identities=28%  Similarity=0.390  Sum_probs=30.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ..-|++|||||+||..+|.++++. + +|.++|+++..
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~-g-~V~lie~~~~~   42 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQT-Y-EVTVIDKEPVP   42 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSSSC
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhc-C-CEEEEECCCCC
Confidence            346999999999999999999876 6 99999999753

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=95.16  E-value=0.013  Score=71.57  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+.+|++|||||.||+.+|.+|++. |++|.++|+++.
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~-g~~v~~~e~~~~  141 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDR  141 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence            3468999999999999999999975 999999999864

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=95.10  E-value=0.022  Score=65.30  Aligned_cols=51  Identities=16%  Similarity=0.111  Sum_probs=39.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      +++++++.++++|+++.-+ ++ ...|++.+. +|++.++.++ .||+|+|.-..
T Consensus       327 ~~~~v~i~~~~~v~~v~~~-~~-~~~v~~~~~~~g~~~~~~~D-~Vv~AtG~~p~  378 (463)
T 3s5w_A          327 GIPRHAFRCMTTVERATAT-AQ-GIELALRDAGSGELSVETYD-AVILATGYERQ  378 (463)
T ss_dssp             CCCCSEEETTEEEEEEEEE-TT-EEEEEEEETTTCCEEEEEES-EEEECCCEECC
T ss_pred             CCCCeEEEeCCEEEEEEec-CC-EEEEEEEEcCCCCeEEEECC-EEEEeeCCCCC
Confidence            4578999999999999876 33 345777654 6777788885 79999997655

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=94.70  E-value=0.019  Score=67.32  Aligned_cols=38  Identities=26%  Similarity=0.211  Sum_probs=32.7

Q ss_pred             CcccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  198 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~  198 (1381)
                      +.+|++|||||+||..+|.++++. ++.+|.++|+++..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            458999999999999999999976 34999999998753

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=94.53  E-value=0.018  Score=67.35  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=32.2

Q ss_pred             cccEEEECCCchHHHHHHHHhc-c-C----CCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSE-V-S----SLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSE-d-p----g~sVLVLEAG~d  197 (1381)
                      .+|++|||||+||..+|.++++ . +    +.+|.++|+++.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~   44 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   44 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCC
Confidence            5899999999999999999987 4 3    799999999865

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=94.05  E-value=0.029  Score=72.06  Aligned_cols=61  Identities=25%  Similarity=0.311  Sum_probs=44.6

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe----cCC-------eEEEEecCcEEEEcCCch-hhHHHHHH-cCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN----SKG-------ETVRVTANKEVILTAGAI-ANAQLLLL-SGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd----~~G-------r~~tV~ArKEVILSAGAI-~SPqLLml-SGI  437 (1381)
                      ++.++++.+++++++|.-+ +++++||++.+    .+|       +++++.|+ .||+|.|.- +++.++.. +|+
T Consensus       381 ~~~Gv~~~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD-~Vi~A~G~~~~~~~l~~~~~gl  454 (1025)
T 1gte_A          381 KEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKAD-VVISAFGSVLRDPKVKEALSPI  454 (1025)
T ss_dssp             HHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEECS-EEEECSCEECCCHHHHHHTTTS
T ss_pred             HHcCCEEEeCCCceEEEcc-CCeEEEEEEEEeEEcCCCCcccCCCceEEEECC-EEEECCCCCCCchhhhhcccCc
Confidence            3568999999999999865 57889998752    123       34567784 799999985 45666654 575

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=93.94  E-value=0.039  Score=69.95  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+.+|++|||||.||..+|.+|++. |++|.|+|+.+.
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~-g~~v~v~E~~~~  312 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDR  312 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCc
Confidence            3468999999999999999999975 899999999864

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=93.93  E-value=0.035  Score=64.35  Aligned_cols=34  Identities=26%  Similarity=0.535  Sum_probs=29.6

Q ss_pred             EEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618        165 IIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  198 (1381)
Q Consensus       165 YIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~  198 (1381)
                      +||||||+||..+|.++++. ++.+|.++|+++..
T Consensus         3 VvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            3 IVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             EEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            79999999999999999875 45789999998753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=93.46  E-value=0.058  Score=61.67  Aligned_cols=39  Identities=23%  Similarity=0.258  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP  199 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~  199 (1381)
                      .++.-++|||||+||..+|.+| ++++.+|.++|+.++.+
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L-~~~~~~itlie~~~~~~   45 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAA-LGKCDDITMINSEKYLP   45 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHH-TTTCSCEEEECSSSSCC
T ss_pred             cCCCCEEEEcCcHHHHHHHHHH-hCCCCEEEEEECCCCCC
Confidence            3456789999999999999999 56799999999998643

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=92.68  E-value=0.065  Score=66.87  Aligned_cols=35  Identities=29%  Similarity=0.436  Sum_probs=31.7

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCC--------CeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSS--------LKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg--------~sVLVLEAG~  196 (1381)
                      +..|++|||||.||.++|.+|++. |        .+|.|+|+.+
T Consensus        55 ~~~~v~IiGaGiaGL~aA~~L~~~-g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           55 GNYRIAIVGGGAGGIAALYELGRL-AATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHH-HTTSCTTCEEEEEEECCCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHc-CcccccCCCceEEEEeccC
Confidence            458999999999999999999975 4        8999999986

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=89.05  E-value=2.1  Score=46.19  Aligned_cols=34  Identities=12%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .++|||||..|+-.|..+++. +.+|.++|+++..
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKF-ADKVTIVHRRDEL  180 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-CSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCEEEEEeccccc
Confidence            589999999999999999975 8999999998753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=87.87  E-value=0.36  Score=57.05  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=30.9

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .++|||||..|+-+|..+++. +.+|.++|+++..
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHL-GIKTTLLELADQV  186 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCCcc
Confidence            689999999999999999975 8999999999753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=87.80  E-value=0.52  Score=51.73  Aligned_cols=32  Identities=16%  Similarity=0.311  Sum_probs=27.9

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++|||||..|+-+|..+++. +.+|.++|+++
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~-g~~V~lv~~~~  199 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKN-GSDIALYTSTT  199 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECC--
T ss_pred             EEEEECCCcCHHHHHHHHHhc-CCeEEEEecCC
Confidence            689999999999999999975 88999999875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=86.94  E-value=0.44  Score=56.95  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=30.6

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .++|||||..|+-+|..+++. +.+|.++|+++..
T Consensus       189 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  222 (588)
T 3ics_A          189 HATVIGGGFIGVEMVENLRER-GIEVTLVEMANQV  222 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCcc
Confidence            689999999999999999975 8999999998753

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=86.54  E-value=1.1  Score=48.14  Aligned_cols=35  Identities=20%  Similarity=0.244  Sum_probs=30.9

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      -.++|||||..|+-.|..+++. |.+|.++|+++..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~-G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKY-GSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHh-CCeeeeecccccc
Confidence            3689999999999999999975 8999999988654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=85.22  E-value=0.72  Score=53.10  Aligned_cols=35  Identities=17%  Similarity=0.342  Sum_probs=31.5

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ...|++|||||.+|+-+|..+++. |.+|.++|+++
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~-g~~Vtlv~~~~  182 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILD  182 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCc
Confidence            347999999999999999999975 89999999986

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=84.88  E-value=8.2  Score=41.52  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=28.0

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      -.++|||||..|+-+|..+++. + +|.++++++
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~-~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTV-A-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhh-C-CEEEEECCC
Confidence            3789999999999999999976 4 699998875

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=84.72  E-value=2.8  Score=45.06  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=31.1

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      -.++|||||..|+-+|..+++. +.+|.++|+++..
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~-g~~v~~v~~~~~~  208 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKY-GSKVFMLVRKDHL  208 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCcc
Confidence            3689999999999999999975 8899999998753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=84.54  E-value=0.73  Score=45.01  Aligned_cols=32  Identities=22%  Similarity=0.481  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++|+|+|.-|..+|.+|++. |++|.++|.-+
T Consensus         9 ~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~   40 (140)
T 3fwz_A            9 HALLVGYGRVGSLLGEKLLAS-DIPLVVIETSR   40 (140)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             CEEEECcCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            589999999999999999975 89999999865

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=83.28  E-value=0.9  Score=43.85  Aligned_cols=32  Identities=31%  Similarity=0.532  Sum_probs=28.6

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++|+|+|.-|..+|.+|+++ |++|.++|.-+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~-g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAA-GKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            589999999999999999976 89999999743

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=82.99  E-value=0.92  Score=44.69  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=28.2

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      .++|+|+|..|..+|.+|++. |++|.++|.-
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~-g~~V~vid~~   35 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQR-GQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCCEEEEECC
Confidence            479999999999999999975 8999999974

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=82.85  E-value=0.63  Score=53.93  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      -+++|||||..|+-+|..+++..+.+|.++|+++..
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~  195 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQI  195 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcc
Confidence            478999999999999999996437899999998753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=82.84  E-value=1.1  Score=42.46  Aligned_cols=32  Identities=38%  Similarity=0.511  Sum_probs=28.4

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++|+|+|..|..+|.+|++. |++|.++|+-+
T Consensus         6 ~i~IiG~G~iG~~~a~~L~~~-g~~v~~~d~~~   37 (140)
T 1lss_A            6 YIIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDK   37 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            589999999999999999975 88999998743

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=81.98  E-value=3.1  Score=49.90  Aligned_cols=34  Identities=12%  Similarity=0.242  Sum_probs=31.1

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      -.++|||||..|.-+|..+++. +.+|.++|+++.
T Consensus       186 krV~VIG~G~tgve~a~~la~~-~~~Vtv~~r~~~  219 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAET-AKELYVFQRTPN  219 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-BSEEEEEESSCC
T ss_pred             CeEEEECCCccHHHHHHHHHhh-CCEEEEEEcCCC
Confidence            4799999999999999999976 889999999985

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=81.03  E-value=4  Score=48.95  Aligned_cols=34  Identities=9%  Similarity=0.131  Sum_probs=31.2

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      -.++|||||..|+-+|..+++. +.+|.++|+++.
T Consensus       179 krV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPE-VEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-CSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhh-CCEEEEEECCCC
Confidence            4799999999999999999976 889999999975

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=80.83  E-value=3.6  Score=49.39  Aligned_cols=34  Identities=9%  Similarity=0.251  Sum_probs=31.0

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      -.++|||||..|.-+|..+++. +.+|.++|+++.
T Consensus       192 krV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~  225 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQ-AEQLFVFQRSAN  225 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSCC
T ss_pred             CEEEEECCCchHHHHHHHHHhh-CCEEEEEECCCC
Confidence            3789999999999999999986 789999999985

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=80.21  E-value=1.3  Score=43.69  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=28.6

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++|+|+|.-|..+|.+|++. |.+|.++|+-+
T Consensus        21 ~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~   52 (155)
T 2g1u_A           21 YIVIFGCGRLGSLIANLASSS-GHSVVVVDKNE   52 (155)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESCG
T ss_pred             cEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            589999999999999999975 78999998754

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=80.20  E-value=9  Score=40.25  Aligned_cols=33  Identities=18%  Similarity=0.058  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      -.++|||||..|+-+|..+++. + +|.++++++.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~-g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDW-G-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGT-S-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhc-C-cEEEEECCCC
Confidence            4789999999999999999986 6 9999998875

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=80.16  E-value=6.1  Score=41.96  Aligned_cols=35  Identities=26%  Similarity=0.209  Sum_probs=31.4

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      -.++|||+|..|+-+|..+++. +.+|.++|+++..
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~-g~~v~~~~~~~~~  189 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSY-STKVYLIHRRDTF  189 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-SSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHh-CCeEEEEEeCCCC
Confidence            4789999999999999999976 8899999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1381
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	2e-59
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	1e-06
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	1e-58
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	3e-04
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	1e-43
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	3e-08
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	4e-42
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	5e-06
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	5e-40
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	4e-37
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	2e-36
d1cf3a2	196	d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus	5e-12
d1gpea2	196	d.16.1.1 (A:329-524) Glucose oxidase {Penicillium	7e-12
d1ju2a2	170	d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond	2e-09
d1kdga2	181	d.16.1.1 (A:513-693) Flavoprotein domain of flavoc	3e-09
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	3e-08
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	8e-07
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-06
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	3e-06
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	6e-06
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	6e-06
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	6e-06
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	1e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	1e-05
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	1e-05
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	2e-05
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-05
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	4e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	5e-05
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	5e-05
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	5e-05
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	6e-05
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	8e-05
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	8e-05
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	8e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	9e-05
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	1e-04
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	1e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	1e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	2e-04
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	2e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	3e-04
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	3e-04
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	3e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	8e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	8e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	9e-04
d1kqfc_	216	f.21.1.1 (C:) Formate dehydrogenase N, cytochrome	0.001
d1kqfc_	216	f.21.1.1 (C:) Formate dehydrogenase N, cytochrome	0.001
d1kqfc_	216	f.21.1.1 (C:) Formate dehydrogenase N, cytochrome	0.001
d1kqfc_	216	f.21.1.1 (C:) Formate dehydrogenase N, cytochrome	0.001
d1kqfc_	216	f.21.1.1 (C:) Formate dehydrogenase N, cytochrome	0.001
d1kqfc_	216	f.21.1.1 (C:) Formate dehydrogenase N, cytochrome	0.001
d1kqfc_	216	f.21.1.1 (C:) Formate dehydrogenase N, cytochrome	0.001
d1kqfc_	216	f.21.1.1 (C:) Formate dehydrogenase N, cytochrome	0.001
d1kqfc_	216	f.21.1.1 (C:) Formate dehydrogenase N, cytochrome	0.001
d1kqfc_	216	f.21.1.1 (C:) Formate dehydrogenase N, cytochrome	0.001
d1kqfc_	216	f.21.1.1 (C:) Formate dehydrogenase N, cytochrome	0.001
d1kqfc_	216	f.21.1.1 (C:) Formate dehydrogenase N, cytochrome	0.001
d1kqfc_	216	f.21.1.1 (C:) Formate dehydrogenase N, cytochrome	0.001
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	0.001
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	0.002
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.003
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	0.003
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	0.004
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	0.004
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	0.004
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	0.004

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  207 bits (527), Expect = 2e-59
 Identities = 95/373 (25%), Positives = 146/373 (39%), Gaps = 30/373 (8%)

Query: 155 PYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHS---RIPGMSSVL 211
           P   SG   D II G    G   A RL+E  ++ VL+IE+G                  +
Sbjct: 10  PKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDI 69

Query: 212 SLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL- 270
             S  DHAY         L   N    I +G GLGGS+ V    + R      +++  + 
Sbjct: 70  FGSSVDHAYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVF 124

Query: 271 GYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVG--------LFKNKENNIIR 322
           G  GW +D    Y +++E  R+    +  A H                      + + I 
Sbjct: 125 GNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIV 184

Query: 323 EIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVL 382
           +   ++ ++ G P  KD               +    +R  AA  +L P   +R NL VL
Sbjct: 185 KALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQVL 243

Query: 383 KRSKVTKVIINDQN---VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 439
               V KV+++       A GVE+   KG T  V A  EV+L AG+  +  +L  SGIG 
Sbjct: 244 TGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGM 303

Query: 440 KAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPL- 498
           K+ L+ + I    DL VG    +  +  G V          VY  + + + +   I P  
Sbjct: 304 KSILEPLGIDTVVDLPVGLCSMMPKEMGGVVDNA-----ARVYGVQGL-RVIDGSIPPTQ 357

Query: 499 --SNMHSYCYCLA 509
             S++ +  Y +A
Sbjct: 358 MSSHVMTVFYAMA 370

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 17/115 (14%)

Query: 675 RGTDYITRLEQTEAIR------LAGGTLMS---LNLEACSQYPWRSTHSWTCYIRHLTTT 725
            G ++ T    T  +       LA G+ +S   L                   +  L   
Sbjct: 263 VGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDT-VVDL--- 318

Query: 726 TSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAIITQSDAISFLL 780
              PVG   M    +   VV    +V G++GLRV D S+ P  + +    + + +
Sbjct: 319 ---PVGLCSMMP-KEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAM 369

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score =  205 bits (522), Expect = 1e-58
 Identities = 93/364 (25%), Positives = 147/364 (40%), Gaps = 36/364 (9%)

Query: 155 PYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG---DTPIHSRIPGMSSVL 211
           P   +G  +D II G    G  +A +L+E   +KVL+IE G    +       P     +
Sbjct: 17  PSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQI 76

Query: 212 SLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK-L 270
             +  D  YL  P       + N    I AGKGLGGS+ +    + R      +++ K  
Sbjct: 77  FGTTVDQNYLTVP------LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVF 130

Query: 271 GYNGWGYDETLKYFVKSEDYRSV-------IYNESKAVHGTQGYLPVGLFKN-KENNIIR 322
           G  GW +D   +Y  K+E  R+         ++ +   HGT G +  G   N +  + I 
Sbjct: 131 GMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIM 190

Query: 323 EIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVL 382
           +    +   LG P  +D    +       +  +    +R  AA A+L P   +R+NL +L
Sbjct: 191 KALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPN-YQRSNLEIL 249

Query: 383 KRSKVTKVIINDQ---NVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP 439
               V KV+         A GV +  +K     V A  EV+L AG+  +  +L  SGIG 
Sbjct: 250 TGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGL 309

Query: 440 KAHLDEVKIPVKQDLR--VGENLK--LNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRI 495
           K+ LD+  +    DL   +   +   L            A  K  VY  + + + +   I
Sbjct: 310 KSVLDQANVTQLLDLPVGICSMMSRELGGV-------VDATAK--VYGTQGL-RVIDGSI 359

Query: 496 GPLS 499
            P  
Sbjct: 360 PPTQ 363

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 17/116 (14%)

Query: 663 ILSEPEDLATLIRGTDYITRLEQTEAIR------LAGGTLMS---LNLEACSQYPWRSTH 713
           +L +         G ++ T       +       LA G+ +S   L              
Sbjct: 257 VLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQA 316

Query: 714 SWTCYIRHLTTTTSNPVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAI 769
           + T  +  L      PVG   M  + +   VV    KV G +GLRV D S+ P  +
Sbjct: 317 NVTQ-LLDL------PVGICSMM-SRELGGVVDATAKVYGTQGLRVIDGSIPPTQV 364

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score =  161 bits (408), Expect = 1e-43
 Identities = 41/308 (13%), Positives = 84/308 (27%), Gaps = 29/308 (9%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
           +D++IVG+   GC  A  L   +  KV + + G             + +   +    ++ 
Sbjct: 5   YDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVN 63

Query: 223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK----------LGY 272
                  L   +  +       L  +S   +  + R  S   ++  +          +G 
Sbjct: 64  VIQ--GQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGG 121

Query: 273 NGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFK-NKENNIIREIFETSAQE 331
               +      F + +                         K         + F+ S + 
Sbjct: 122 MSTHWTCATPRFDREQRPL----LVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRH 177

Query: 332 LGYPCPKDMNDRYVDVGFAELP----GMTRYGLRFSAADAYLTPI-----AGKRTNLYVL 382
                            F ++P      +   + +S+A+                   + 
Sbjct: 178 NLVLNKLAEE-YKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLF 236

Query: 383 KRSKVTKVIINDQN-VATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKA 441
                 +V+ N  N     +   +              +LTAGA+ N QLL+ SG G   
Sbjct: 237 PAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLG 296

Query: 442 HLDEVKIP 449
             +    P
Sbjct: 297 RPNPTNPP 304

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 55.4 bits (132), Expect = 3e-08
 Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 10/113 (8%)

Query: 661 TGILSEPE-DLATLIRGTDYITRLEQTEAIR---LAGGTLMSLNLEACSQYPWRSTHSWT 716
             ++          +   D I+            L  G + +  L               
Sbjct: 242 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV-----NSGFGQLG 296

Query: 717 CYIRHLTTTTSNPVGTVMMGNADDP-NAVVTPDLKVKGIKGLRVADISVLPNA 768
                        +G+  MG  +   N  V  D +V G K L +     +P A
Sbjct: 297 RPNPTNPPELLPSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTA 349

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score =  156 bits (395), Expect = 4e-42
 Identities = 68/333 (20%), Positives = 111/333 (33%), Gaps = 25/333 (7%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD---TPIHSRIPGMSSVLSLSEFDHA 219
           +D IIVGA   G + A+RLSE +  KVLL+E GG        + +   ++   L++FD  
Sbjct: 3   YDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIP 61

Query: 220 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDE 279
            L E            +        L G     N         +  +F+        +  
Sbjct: 62  GLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVN--GALYWYPNDGDFSSSVGWPSSWTN 119

Query: 280 TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKD 339
              Y  K         +       T G         +  N++ ++ +   Q        D
Sbjct: 120 HAPYTSKLSSRLPSTDH-----PSTDGQRY----LEQSFNVVSQLLKG--QGYNQATIND 168

Query: 340 MNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVAT 399
             +    V             + +   A     A  R N        V+ V+  + +   
Sbjct: 169 NPNYKDHVFGY--SAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVR-NGSQIL 225

Query: 400 GVEYVNS---KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI-PVKQDLR 455
           GV+  +        + VT    VIL+AGA   +++L  SGIGP   +  V+  P      
Sbjct: 226 GVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAAL 285

Query: 456 VGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVF 488
             +N  +N       +  S+P    V S   VF
Sbjct: 286 PPQNQWINLPVGMTTIG-SSPQSAVVDSNVKVF 317

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 729 PVGTVMMGNADDPNAVVTPDLKVKGIKGLRVADISVLPNAII--TQSDAIS 777
           PVG   +G+    +AVV  ++KV G   L + D  ++P+      Q   +S
Sbjct: 295 PVGMTTIGS-SPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMS 344

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  150 bits (379), Expect = 5e-40
 Identities = 69/301 (22%), Positives = 109/301 (36%), Gaps = 35/301 (11%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
           +D +IVG   +GC LA  LSE    KVL++E G     +  +      +   + +     
Sbjct: 27  YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84

Query: 223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
              +F         I    G+ LGG+S +   +Y R  +  Y          W  D   +
Sbjct: 85  PVERFVS----EDGIDNVRGRVLGGTSIINAGVYARANTSIYSASG----VDWDMDLVNQ 136

Query: 283 YFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMND 342
            +   ED                      +     +   + + +T+  E G       + 
Sbjct: 137 TYEWVEDT---------------------IVYKPNSQSWQSVTKTAFLEAGVHPNHGFSL 175

Query: 343 RYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVE 402
            + +            G R  AAD  L         + V    +           ATGV 
Sbjct: 176 DHEEGTRITGSTFDNKGTR-HAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVI 234

Query: 403 YVNSKGETVRVT--ANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGEN 459
           Y +S G   +    +  EVI++AG I   QLLLLSG+GP+++L  + IPV      VG+ 
Sbjct: 235 YRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQC 294

Query: 460 L 460
           L
Sbjct: 295 L 295

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score =  141 bits (357), Expect = 4e-37
 Identities = 56/338 (16%), Positives = 103/338 (30%), Gaps = 59/338 (17%)

Query: 157 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIP----------- 205
           +  GD    +++G+   G V A RL++ + +   ++E G                     
Sbjct: 2   LADGDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDK 60

Query: 206 --------GMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQ 257
                       V +   F      +         R + IK+  G+G+GG S V   +  
Sbjct: 61  RSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAV 120

Query: 258 RGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKE 317
                 +E       +   Y+   KYF ++     V   + +A   +  +          
Sbjct: 121 TPKRNYFEEILPSVDSNEMYN---KYFPRANTGLGVNNID-QAWFESTEWYKFA------ 170

Query: 318 NNIIREIFETSAQELGY-----PCPKDMND-------RYVDVGFAELPGMTRYGLRFSAA 365
                     +AQ  G+     P   D          +    G            + S  
Sbjct: 171 -----RTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLD 225

Query: 366 DAYLTPIAGKRTNLYVLKRSKVTKVII-NDQNVATGVEYVNSKGETV--RVTANKEVILT 422
             YL   A     L +    +VTKV        +  +E ++ +G  V  +V     V   
Sbjct: 226 KTYLAQ-AAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFA 284

Query: 423 AGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVGENL 460
           AG++  ++LL+           +  +P     +VGE  
Sbjct: 285 AGSVGTSKLLVSMK-------AQGHLPNLSS-QVGEGW 314

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score =  139 bits (351), Expect = 2e-36
 Identities = 55/363 (15%), Positives = 118/363 (32%), Gaps = 47/363 (12%)

Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD----TPIHSRIPGMSSVLSLSEFDHA 219
             +++G      V A RL E + ++ L++E G       P  +   GM +    S +   
Sbjct: 4   PAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKN 62

Query: 220 YLAEPSQFAGL----------------GVRNARIKITAGKGLGGSSAVQNILYQRGTSYD 263
               P                       V   ++ +  G+G+GG S V   +        
Sbjct: 63  RTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSY 122

Query: 264 YENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNK-ENNIIR 322
           +E            +   +YF ++     V + ++K    T+ Y    + + +     + 
Sbjct: 123 FEEI---LPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGLG 179

Query: 323 EIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVL 382
            +F  +  + GY   ++          A          + S    YL   A     + + 
Sbjct: 180 TVFVPNVYDFGYM-QREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAA-ALGTGKVTIQ 237

Query: 383 KRSKVTKVII-NDQNVATGVEYVNSKGETV--RVTANKEVILTAGAIANAQLLLLSGIGP 439
              +V  +    D   A  VE  ++ G+ +  +  + + + L AG++ + +LL+ +    
Sbjct: 238 TLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR--- 294

Query: 440 KAHLDEVKIPVKQDLRVGENLKLNAQFTGPVMAFSAPLKRTVYSQEMVFKYLVNRIGPLS 499
               D   +P      VG          G V+  +      V   + +  Y+ +      
Sbjct: 295 ----DTGTLPNLNS-EVGAGW-------GCVLGKATDDYGRVAGYKNL--YVTDGSLIPG 340

Query: 500 NMH 502
           ++ 
Sbjct: 341 SVG 343

>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 64.0 bits (155), Expect = 5e-12
 Identities = 30/217 (13%), Positives = 60/217 (27%), Gaps = 27/217 (12%)

Query: 520 QD-LRVGENLKLNAQFTGP-VMAFSAPLKRTVYSQ-EMVFKYLVNRIGPLSNAGLWSFTG 576
           QD        ++ +   G    A+ A    T     E   + L  ++   +   +    G
Sbjct: 3   QDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVAR-GG 61

Query: 577 YIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMS 636
           + +T     + +     +                   N  V  + + L+         + 
Sbjct: 62  FHNTTALLIQYENYRDWI------------------VNHNVAYSELFLDTAGVAS-FDVW 102

Query: 637 LVNPKSCGKVTLKSADPLA-PPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
            + P + G V +   DP       D        DL      T     +  + A++     
Sbjct: 103 DLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAG 162

Query: 696 LMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGT 732
                +   +        +WT YI +      + VGT
Sbjct: 163 ET---IPGDNLAYDADLSAWTEYIPYHFRPNYHGVGT 196

>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 63.6 bits (154), Expect = 7e-12
 Identities = 24/217 (11%), Positives = 52/217 (23%), Gaps = 27/217 (12%)

Query: 520 QD-LRVGENLKLNAQFTGPVMAFSAPLKRTVYSQ--EMVFKYLVNRIGPLSNAGLWSFTG 576
           QD      + + ++   G   A         +          L  ++   +   +    G
Sbjct: 3   QDQTTTTVSSRASSAGAGQGQAVFFANFTETFGDYAPQARDLLNTKLDQWAEETVARG-G 61

Query: 577 YIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMS 636
           + +      + +   + L                    DE                  + 
Sbjct: 62  FHNVTALKVQYENYRNWLL-------------------DEDVAFAELFMDTEGKINFDLW 102

Query: 637 LVNPKSCGKVTLKSADPLA-PPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGT 695
            + P + G V + S+DP       D        DL      +     L    A++     
Sbjct: 103 DLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAG 162

Query: 696 LMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVGT 732
                L   +     +   W+ Y+        + V +
Sbjct: 163 ET---LPGYNLVQNATLSQWSDYVLQNFRPNWHAVSS 196

>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 170

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 55.9 bits (134), Expect = 2e-09
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 631 GVISMSLVNPKSCGKVTLK-SADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAI 689
              +  +  P S G +TLK S++    P +     S   DL+  + G   I  L  T+A+
Sbjct: 63  AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDAL 122

Query: 690 R-LAGGTLMSLNLEACSQYPW----RSTHSWTCYIRHLTTTT 726
           +      L  +        P         ++  + R    + 
Sbjct: 123 KPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASY 164

>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 181

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 56.0 bits (134), Expect = 3e-09
 Identities = 16/181 (8%), Positives = 47/181 (25%), Gaps = 31/181 (17%)

Query: 552 QEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAY 611
                +YL N+ G  + A          +  +      +  +     +            
Sbjct: 32  PADAAQYLANQSGVFAGASPKLNFWRAYSGSDGFTRYAQGTVRPGAASVN---------- 81

Query: 612 DFNDEVQTAYVNLNKRTDMGVISMSLVNPKSCGKVTLKSADPLAPPCIDTGILSEPEDLA 671
                   + +  N      +        +S G++ + +   L    +    L  P D  
Sbjct: 82  --------SSLPYNASQIFTITVYLSTGIQSRGRIGIDA--ALRGTVLTPPWLVNPVDKT 131

Query: 672 TLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPWRSTHSWTCYIRHLTTTTSNPVG 731
            L++    +     +          +++     +Q    +   +       T  +++ V 
Sbjct: 132 VLLQALHDVVSNIGSIP-------GLTMITPDVTQ----TLEEYVDAYDPATMNSNHWVS 180

Query: 732 T 732
           +
Sbjct: 181 S 181

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (130), Expect = 3e-08
 Identities = 36/301 (11%), Positives = 79/301 (26%), Gaps = 54/301 (17%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSE----FDH 218
           +D+I++G     C+L+  LS     KVL I+            G ++ ++LS+    F  
Sbjct: 6   YDVIVLGTGITECILSGLLSV-DGKKVLHIDK------QDHYGGEAASVTLSQLYEKFKQ 58

Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYD 278
             +++  + +  G           K L  +  + NIL     +   +     G   +   
Sbjct: 59  NPISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQG 118

Query: 279 E------------------------TLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFK 314
           +                          K+      Y+    +  + +   +  +    +K
Sbjct: 119 KIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYK 178

Query: 315 NKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAEL----------PGMTRYGLRFSA 364
               N  +E    +              R                   P +         
Sbjct: 179 FGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGEL 238

Query: 365 ADAYLTPIAGKRTNLYVLKRSKVTKVIINDQN-VATGVEYVNSKGETVRVTANKEVILTA 423
              +             +  + + +V+         GV+   +K  T +      VI   
Sbjct: 239 PQGFARLS--AIYGGTYMLDTPIDEVLYKKDTGKFEGVK---TKLGTFKA---PLVIADP 290

Query: 424 G 424
            
Sbjct: 291 T 291

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 49.7 bits (117), Expect = 8e-07
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPG 206
           +D+I++G   +G + A   +E     VLL++ G        I G
Sbjct: 3   YDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKGNKLGRKLAISG 45

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.8 bits (117), Expect = 1e-06
 Identities = 17/128 (13%), Positives = 40/128 (31%), Gaps = 7/128 (5%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
           +D+I++G     C+L+  +S  +  KVL ++       +    G SS ++  E  +    
Sbjct: 7   YDVIVLGTGLTECILSGIMSV-NGKKVLHMDR------NPYYGGESSSITPLEELYKRFQ 59

Query: 223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
                     R     +        ++     +        Y +F  +  +       + 
Sbjct: 60  LLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIY 119

Query: 283 YFVKSEDY 290
               +E  
Sbjct: 120 KVPSTETE 127

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 41/278 (14%), Positives = 92/278 (33%), Gaps = 28/278 (10%)

Query: 139 ERYNIYRSVI--YPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196
           +   + R +   Y  DM  Y +     D+++VGA +AG   A  +S+  +++V +IE   
Sbjct: 12  KESIVSREMTRRYMTDMITYAE----TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 67

Query: 197 DTPIHSRIPG-MSSVLSLSEFDHAYLAE---PSQFAGLGVRNARIKITAGKGLGGSSAVQ 252
                + + G + S + + +  H +L E           V      +     +    A  
Sbjct: 68  SPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARP 127

Query: 253 NILYQRGTSYDYENFAKLGYNG-WGYDETLKYFVKSEDYRSVIYNESKAVHGTQG----Y 307
           N+      + +          G       +     ++        E+K V  + G    +
Sbjct: 128 NVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPF 187

Query: 308 LPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAEL-PGMTRYGLRFSAAD 366
              G+ + K   +I  +              +  +  +     E+ PGM   G+  +  D
Sbjct: 188 GATGVKRLKSIGMIDHVPGM------KALDMNTAEDAIVRLTREVVPGMIVTGMEVAEID 241

Query: 367 AY--LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVE 402
               + P  G      ++   K  ++ +    +   ++
Sbjct: 242 GAPRMGPTFGA----MMISGQKAGQLALKALGLPNAID 275

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 47.7 bits (112), Expect = 6e-06
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPG 206
            D+++VG+  AG   A   ++ S  KV+LIE       ++++  
Sbjct: 17  VDVVVVGSGGAGFSAAISATD-SGAKVILIEKEPVIGGNAKLAA 59

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 47.7 bits (112), Expect = 6e-06
 Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 139 ERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT 198
           ++  I +++   P  T          +++VGA +AG   +    + +   V+L++    +
Sbjct: 4   DQDKIQKAIAAGPSET--------TQVLVVGAGSAGFNASLAAKK-AGANVILVDKAPFS 54

Query: 199 PIHSRIPGMSSVLSLSEFDHAYLAEPS 225
             +S I         ++   A+  E  
Sbjct: 55  GGNSMISAGGMNAVGTKQQTAHGVEDK 81

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 8/153 (5%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG------GDTPIHSRIPGMSSVLSLSEF 216
           FD+I++GA   G V A + ++   LK  LIE                  G     +L + 
Sbjct: 4   FDVIVIGAGPGGYVAAIKSAQ-LGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDS 62

Query: 217 DHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWG 276
            + +      F   G+    + I     +     +   L   G +   +      + G G
Sbjct: 63  SYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNL-TGGVASLIKANGVTLFEGHG 121

Query: 277 YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLP 309
                K    +    S    +++ V    G  P
Sbjct: 122 KLLAGKKVEVTAADGSSQVLDTENVILASGSKP 154

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GGDTPIHSRIPGMSSVLSLSEFDH 218
           +D++++G    G   A   ++   LKV ++E     GG       IP  +        + 
Sbjct: 7   YDVVVLGGGPGGYSAAFAAAD-EGLKVAIVERYKTLGGVCLNVGCIPSKA-----LLHNA 60

Query: 219 AYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGY 277
           A + E    A  G++    ++           V + L              +   G G 
Sbjct: 61  AVIDEVRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDV-IQGDGQ 118

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA---GGDTPIHSRIP 205
           +D+I++G  + G   A R +   + KV L+E    GG       +P
Sbjct: 2   YDLIVIGGGSGGMAAARRAAR-HNAKVALVEKSRLGGTCVNVGCVP 46

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 151 PDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIP--GMS 208
           P+ +         D++I+G+ AAG  LA RL++    +V+++  G  T   +     G++
Sbjct: 4   PEHS--------CDVLIIGSGAAGLSLALRLAD--QHQVIVLSKGPVTEGSTFYAQGGIA 53

Query: 209 SVLSLSEFDHAYLAEPSQFAGLGVRN 234
           +V            E +  AG G+ +
Sbjct: 54  AVFD-ETDSIDSHVEDTLIAGAGICD 78

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGM 207
            D++I+G+  AG   A    + +  KV+L+E       ++++   
Sbjct: 24  TDVVIIGSGGAGLAAAVSARD-AGAKVILLEKEPIPGGNTKLAAG 67

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GGDTPIHSRIPGMSSVLSLSEF 216
           D  D++I+G    G V A + ++    K   IE     GG       IP      +L   
Sbjct: 2   DENDVVIIGGGPGGYVAAIKAAQ-LGFKTTCIEKRGALGGTCLNVGCIPSK----ALLHS 56

Query: 217 DHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWG 276
            H Y      FA  GV+ + ++I     +G      + L +       +N          
Sbjct: 57  SHMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK 116

Query: 277 YDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN 318
           +    +  V + +  + +      +  T G    G       
Sbjct: 117 FVSPSEISVDTIEGENTVVKGKHIIIAT-GSDVKGRTPFTSG 157

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 44.9 bits (105), Expect = 4e-05
 Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 24/193 (12%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIP--GMSSVLSLSEFDHAY 220
           FD +++GA  AG   A ++S+ S     L+     T  H+     G++  L  +  D+  
Sbjct: 8   FDAVVIGAGGAGMRAALQISQ-SGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWE 66

Query: 221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDET 280
                             +     +G   A++   Y   T  +     +     +   + 
Sbjct: 67  WH------------MYDTVKGSDYIGDQDAIE---YMCKTGPEAILELEHMGLPFSRLDD 111

Query: 281 LKYFVKSEDYRSVIYNESKAVHG------TQGYLPVGLFKNKENNIIREIFETSAQELGY 334
            + + +    +S  +   +A         T   L   L++    N      E  A +L  
Sbjct: 112 GRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVK 171

Query: 335 PCPKDMNDRYVDV 347
                +       
Sbjct: 172 NQDGAVVGCTALC 184

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG 196
            D++I+G   AG V A + ++        +E  G
Sbjct: 6   HDVVIIGGGPAGYVAAIKAAQ-LGFNTACVEKRG 38

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (102), Expect = 5e-05
 Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYL 221
           FD+II+G  + G   A   ++    KV++++    TP+ +      + +++       +
Sbjct: 4   FDLIIIGGGSGGLAAAKEAAK-FDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLM 61

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.3 bits (103), Expect = 5e-05
 Identities = 31/294 (10%), Positives = 71/294 (24%), Gaps = 30/294 (10%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLA 222
            DI+I GA   G   A  L +    KV L+E+  +         +    ++       L 
Sbjct: 2   IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPA-AVEALAELGLG 60

Query: 223 EPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLK 282
                  +     R    +G           +  +         + +   +       L 
Sbjct: 61  PALAATAIPTHELRYIDQSGAT---------VWSEPRGVEAGNAYPQYSIHRGELQMILL 111

Query: 283 YFVKSEDYRSVIYNESKAVHGTQGYLPVGL-FKNKENNI--IREIFETSAQELGYPCPKD 339
             V+    +  +          +    V +  ++       +       A  +       
Sbjct: 112 AAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAH 171

Query: 340 MNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVAT 399
           ++     +                 A   + P+     +  +L   ++   +  + +VA 
Sbjct: 172 LHPDQRPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARNADVAA 231

Query: 400 GVE-YVNSKGETVRVTANKEVILTA-----------GAIANAQLLLLSGIGPKA 441
            +  Y     E  R     ++IL                   +   L  I    
Sbjct: 232 ALREY-----EEARRPTANKIILANREREKEEWAAASRPKTEKSAALEAITGSY 280

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGM 207
            + II+GA AAG   A +L++     V + + G        + G 
Sbjct: 5   SENIIIGAGAAGLFCAAQLAK-LGKSVTVFDNGKKIGRKILMSGG 48

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 43.9 bits (102), Expect = 8e-05
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAY 220
           FD+I+VGA + G     +L++   +K LL++A      +    G + ++  +  +   
Sbjct: 4   FDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGRE 60

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 43.6 bits (101), Expect = 8e-05
 Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195
           ++ +++G    G  +A  L++  +    L E+G
Sbjct: 5   YEAVVIGGGIIGSAIAYYLAK-ENKNTALFESG 36

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 44.2 bits (103), Expect = 8e-05
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 14/79 (17%)

Query: 133 YPRLEKERYNIYRSVIYPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEV---SSLKV 189
           YP+    +Y +Y++   P ++       +  DI+I+G   +GC  A   +       LKV
Sbjct: 3   YPK----KYELYKADEVPTEVV------ET-DILIIGGGFSGCGAAYEAAYWAKLGGLKV 51

Query: 190 LLIEAGGDTPIHSRIPGMS 208
            L+E        +   G+S
Sbjct: 52  TLVEKAAVERSGAVAQGLS 70

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 9e-05
 Identities = 17/151 (11%), Positives = 41/151 (27%), Gaps = 8/151 (5%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG--GDTPIHSRIPGMSSVLSLSEFDHAY 220
           +D +++G  + G   A R +E    +  ++E+   G T ++        + + +      
Sbjct: 4   YDYLVIGGGSGGLASARRAAE-LGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFM 62

Query: 221 LAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDET 280
                  A  G  +   K           A  + L     +   ++  ++   G     +
Sbjct: 63  ----HDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEI-IRGHAAFTS 117

Query: 281 LKYFVKSEDYRSVIYNESKAVHGTQGYLPVG 311
                     +           G     P  
Sbjct: 118 DPKPTIEVSGKKYTAPHILIATGGMPSTPHE 148

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG--GDTPIHSRIPGMSSVLSLSEFDHAY 220
           +D I +G  + G    NR +     K  LIEA   G T ++        +   ++   A 
Sbjct: 3   YDYIAIGGGSGGIASINRAAM-YGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAI 61

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 43.6 bits (101), Expect = 1e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIP--GMSSVL 211
            D +++G   AG   A    +   L  +++        HS     GM + L
Sbjct: 6   CDSLVIGGGLAGLRAAVATQQ-KGLSTIVLSLIPVKRSHSAAAQGGMQASL 55

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA---GGDTPIHSRIPGMSSVLSLSEFDHA 219
             ++I+G    G V A R  ++  +  +L+E    GG       IP  + +    +F  A
Sbjct: 6   TTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQA 64

Query: 220 YLAEPSQFAGLGVRNARIKITA 241
                    G+ V + R+ I  
Sbjct: 65  SRFTEPSPLGISVASPRLDIGQ 86

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTPIHSRIP--GMSSVLS 212
            D+ IVGA  AG   A   ++ +   K+ LI        H+     G ++V  
Sbjct: 6   ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQ 58

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 42.8 bits (99), Expect = 2e-04
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195
            I+I+GA   G  LA+ L       + +++ G
Sbjct: 3   RIVIIGAGIVGTNLADELVTRGWNNITVLDQG 34

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 151 PDMTPYVKSGDC-----FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD 197
           PD    + + D      +D I +G  AAG   +  L      + L+++    
Sbjct: 26  PDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRA-MGGRQLIVDRWPF 76

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 139 ERYNIYRSVI--YPPDMTPYVKSGDCFDIIIVGASAAGCVLANRLSEVS-SLKVLLIEAG 195
               + R++   Y  D+  +       D+IIVGA ++G   A  +++    LKV +IE+ 
Sbjct: 29  RESTVSRAMTSRYFKDLDKFAV----SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS 84

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 43/310 (13%), Positives = 86/310 (27%), Gaps = 32/310 (10%)

Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG------------DTPIHSRIPGM 207
           ++ +VG   +G  +A+ L        +L+E+    GG            +   +S +   
Sbjct: 2   NVAVVGGGISGLAVAHHLRS-RGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDRE 60

Query: 208 SSVLSL-SEFDHAYLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYEN 266
            +  +L +  +       +  A                    + + + +   G       
Sbjct: 61  PATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAG 120

Query: 267 FAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAV-HGTQGYLPVGLFKNKENNIIREIF 325
                    G DE+L  F +             AV  G        L       ++ ++ 
Sbjct: 121 ELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKME 180

Query: 326 ETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRS 385
                 +          R   +     P ++     F      L               +
Sbjct: 181 REHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGA 240

Query: 386 KVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLL---------LLSG 436
           +V  +   D         +   G    ++  + V+L A A A A+LL         L++G
Sbjct: 241 RVEGLAREDGGWRL---IIEEHGRRAELSVAQ-VVLAAPAHATAKLLRPLDDALAALVAG 296

Query: 437 IGPKAHLDEV 446
           I    HL+ V
Sbjct: 297 IYNLGHLERV 306

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 11/59 (18%)

Query: 148 IYPPDMTPYVKSGDC------FDIIIVGASAAGCVLANRLSEVSS-----LKVLLIEAG 195
           IYP D     +  +        D++IVGA  AG   A RL ++++     L+V L+E  
Sbjct: 12  IYPRDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKA 70

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEA 194
           +D IIVG+   G V AN L +  + KVL+IE 
Sbjct: 2   YDYIIVGSGLFGAVCANELKK-LNKKVLVIEK 32

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 40.2 bits (93), Expect = 9e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG 195
            + ++VGA   G V A R ++    KV ++E G
Sbjct: 4   TETLVVGAGPGGYVAAIRAAQ-LGQKVTIVEKG 35

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]} Length = 216

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 790 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 849
            ++  F L+ L  +    P    L        +   L     + +   ++ +F+      
Sbjct: 19  TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 78

Query: 850 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 906
           +     +   L +  +L      +  +         +   +  ++F+LL   + +  P F
Sbjct: 79  IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 138

Query: 907 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 942
              F   ++ + LL       +L+  +++ +++  +
Sbjct: 139 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]} Length = 216

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 822 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 881
            ++  F L+ L  +    P    L        +   L     + +   ++ +F+      
Sbjct: 19  TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 78

Query: 882 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 938
           +     +   L +  +L      +  +         +   +  ++F+LL   + +  P F
Sbjct: 79  IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 138

Query: 939 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 974
              F   ++ + LL       +L+  +++ +++  +
Sbjct: 139 AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]} Length = 216

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 854  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 913
             ++  F L+ L  +    P    L        +   L     + +   ++ +F+      
Sbjct: 19   TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 78

Query: 914  LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 970
            +     +   L +  +L      +  +         +   +  ++F+LL   + +  P F
Sbjct: 79   IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 138

Query: 971  LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1006
               F   ++ + LL       +L+  +++ +++  +
Sbjct: 139  AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]} Length = 216

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 886  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 945
             ++  F L+ L  +    P    L        +   L     + +   ++ +F+      
Sbjct: 19   TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 78

Query: 946  LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1002
            +     +   L +  +L      +  +         +   +  ++F+LL   + +  P F
Sbjct: 79   IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 138

Query: 1003 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1038
               F   ++ + LL       +L+  +++ +++  +
Sbjct: 139  AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]} Length = 216

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 918  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 977
             ++  F L+ L  +    P    L        +   L     + +   ++ +F+      
Sbjct: 19   TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 78

Query: 978  LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1034
            +     +   L +  +L      +  +         +   +  ++F+LL   + +  P F
Sbjct: 79   IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 138

Query: 1035 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1070
               F   ++ + LL       +L+  +++ +++  +
Sbjct: 139  AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]} Length = 216

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 950  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1009
             ++  F L+ L  +    P    L        +   L     + +   ++ +F+      
Sbjct: 19   TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 78

Query: 1010 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1066
            +     +   L +  +L      +  +         +   +  ++F+LL   + +  P F
Sbjct: 79   IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 138

Query: 1067 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1102
               F   ++ + LL       +L+  +++ +++  +
Sbjct: 139  AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]} Length = 216

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 982  LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1041
             ++  F L+ L  +    P    L        +   L     + +   ++ +F+      
Sbjct: 19   TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 78

Query: 1042 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1098
            +     +   L +  +L      +  +         +   +  ++F+LL   + +  P F
Sbjct: 79   IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 138

Query: 1099 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1134
               F   ++ + LL       +L+  +++ +++  +
Sbjct: 139  AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]} Length = 216

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 1014 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1073
             ++  F L+ L  +    P    L        +   L     + +   ++ +F+      
Sbjct: 19   TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 78

Query: 1074 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1130
            +     +   L +  +L      +  +         +   +  ++F+LL   + +  P F
Sbjct: 79   IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 138

Query: 1131 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1166
               F   ++ + LL       +L+  +++ +++  +
Sbjct: 139  AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]} Length = 216

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 1046 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1105
             ++  F L+ L  +    P    L        +   L     + +   ++ +F+      
Sbjct: 19   TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 78

Query: 1106 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1162
            +     +   L +  +L      +  +         +   +  ++F+LL   + +  P F
Sbjct: 79   IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 138

Query: 1163 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1198
               F   ++ + LL       +L+  +++ +++  +
Sbjct: 139  AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]} Length = 216

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 1078 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1137
             ++  F L+ L  +    P    L        +   L     + +   ++ +F+      
Sbjct: 19   TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 78

Query: 1138 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1194
            +     +   L +  +L      +  +         +   +  ++F+LL   + +  P F
Sbjct: 79   IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 138

Query: 1195 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1230
               F   ++ + LL       +L+  +++ +++  +
Sbjct: 139  AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]} Length = 216

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 1110 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1169
             ++  F L+ L  +    P    L        +   L     + +   ++ +F+      
Sbjct: 19   TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 78

Query: 1170 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1226
            +     +   L +  +L      +  +         +   +  ++F+LL   + +  P F
Sbjct: 79   IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 138

Query: 1227 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1262
               F   ++ + LL       +L+  +++ +++  +
Sbjct: 139  AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]} Length = 216

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 1142 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1201
             ++  F L+ L  +    P    L        +   L     + +   ++ +F+      
Sbjct: 19   TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 78

Query: 1202 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1258
            +     +   L +  +L      +  +         +   +  ++F+LL   + +  P F
Sbjct: 79   IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 138

Query: 1259 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1294
               F   ++ + LL       +L+  +++ +++  +
Sbjct: 139  AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]} Length = 216

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 18/156 (11%), Positives = 54/156 (34%), Gaps = 3/156 (1%)

Query: 1174 LLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLFLFL 1233
             ++  F L+ L  +    P    L        +   L     + +   ++ +F+      
Sbjct: 19   TVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHN 78

Query: 1234 LLLFLLLFLFLLLFLLLLFLILPLFLLLFLFLLLLFLLLFLFLLLFLLL---LFLILPLF 1290
            +     +   L +  +L      +  +         +   +  ++F+LL   + +  P F
Sbjct: 79   IPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYF 138

Query: 1291 LLLFLFLLLLFLLLFLFLLLFLLLLFLILPLFLLLF 1326
               F   ++ + LL       +L+  +++ +++  +
Sbjct: 139  AQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 40.1 bits (92), Expect = 0.001
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 164 DIIIVGASAAGCVLANRLSEVSS----LKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHA 219
           D++IVGA  AG + A  LSE       LKV +I+       + +  G+    +L    + 
Sbjct: 9   DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCR-TLESLKNL 67

Query: 220 YLAEPSQFAGLGVRNARIKITAGKG 244
            LA+        +    +      G
Sbjct: 68  GLADKILSEANDMSTIALYNPDENG 92

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 5/72 (6%)

Query: 165 IIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGDTPIHSRIPGMSSVLS--LSEFDHAYL 221
           +I++G+S  G      L  +    ++   E  GD        GM   L   + + +    
Sbjct: 3   VIVLGSSHGGYEAVEELLNLHPDAEIQWYEK-GDFISFLS-AGMQLYLEGKVKDVNSVRY 60

Query: 222 AEPSQFAGLGVR 233
               +    GV 
Sbjct: 61  MTGEKMESRGVN 72

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 203
           FD++++GA + G   A   + +   +V +I+          
Sbjct: 4   FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFF 44

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 39.2 bits (89), Expect = 0.003
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEA----GG 196
            +I+VGA  +G   A RLSE     +L++EA    GG
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 38

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 165 IIIVGASAAGCVLANRLSEV-SSLKVLLIEAG 195
           +++VG    G   A  +     S++V LIE  
Sbjct: 5   VVVVGGGTGGATAAKYIKLADPSIEVTLIEPN 36

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 38.4 bits (88), Expect = 0.004
 Identities = 6/41 (14%), Positives = 17/41 (41%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSR 203
           +D++++GA + G       + +   +V +I+          
Sbjct: 4   YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHY 44

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 164 DIIIVGASAAGCVLANRLSEV--SSLKVLLIEA---GGDTPIHSRIP 205
            I+I+G   AG   A   +     + +V +I+    GG   +   +P
Sbjct: 3   RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVP 49

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 38.3 bits (88), Expect = 0.004
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG---GDTPIHSRIPGMSSVLSLSEFDHA 219
            D+++VGA  +G     RL E     V +IE     G     +R PG    +   E+ ++
Sbjct: 8   VDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYS 66

Query: 220 YLAEP 224
           +  E 
Sbjct: 67  FSEEV 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1381
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	100.0
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	100.0
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	100.0
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	100.0
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	100.0
d1gpea2	196	Glucose oxidase {Penicillium amagasakiense [TaxId:	99.91
d1cf3a2	196	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.9
d1kdga2	181	Flavoprotein domain of flavocytochrome cellobiose	99.89
d1ju2a2	170	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.83
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.55
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.53
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.46
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.42
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.37
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.35
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.31
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.23
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.17
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.17
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.14
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.14
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.09
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.06
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.97
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.91
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.5
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.4
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.25
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.09
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.98
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	97.89
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.88
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.85
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.83
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.83
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.81
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.79
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.78
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	97.76
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.73
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.7
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.65
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.57
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.56
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.53
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.49
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.47
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.44
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.39
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.35
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.34
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.27
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	97.14
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.11
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.08
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.03
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.86
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.8
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.78
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.51
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.5
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.46
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.13
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.13
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.51
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	95.2
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.2
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.76
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.52
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.41
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.24
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.12
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.87
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.36
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.22
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.15
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.63
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	92.5
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.19
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.49
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.17
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.12
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	91.03
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.95
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.68
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	90.33
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	90.15
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.06
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	90.02
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	89.84
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	89.41
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	89.22
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	88.84
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.17
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	87.69
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.64
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	87.03
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	85.87
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	85.57
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	84.91
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	80.44

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=4.3e-75  Score=658.07  Aligned_cols=300  Identities=29%  Similarity=0.413  Sum_probs=262.2

Q ss_pred             CCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCC---ccccCCccccccCCcccCcccccccccccccCCC
Q psy11618        158 KSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPI---HSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRN  234 (1381)
Q Consensus       158 ~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~---~~~iP~~~~~l~~s~~DW~Y~TePq~~a~~gl~~  234 (1381)
                      ..+++|||||||||+|||++|+||||++++||+|||||++...   ..++|..+....++++||+|+|+||.      +|
T Consensus        20 ~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~------~~   93 (391)
T d1gpea1          20 VAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPLI------NN   93 (391)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCCT------TS
T ss_pred             ccCCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeecC------CC
Confidence            3557899999999999999999999998899999999986432   34678877777888999999999984      68


Q ss_pred             ceeecccccccCccccccceEEecCCccchHHHhh-cCCCCCChhhHHHHHHHhcccccCCcc-------cCCCCCCCCC
Q psy11618        235 ARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAK-LGYNGWGYDETLKYFVKSEDYRSVIYN-------ESKAVHGTQG  306 (1381)
Q Consensus       235 r~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~-lGn~GWswedLlPYFkKsE~~~~p~~~-------~d~~~HG~~G  306 (1381)
                      |+..|+|||++||||++|+|+|.|+++.|||.|++ .|++||+|++++|||+|+|++..+..+       .++++||.+|
T Consensus        94 r~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~  173 (391)
T d1gpea1          94 RTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNG  173 (391)
T ss_dssp             CCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSS
T ss_pred             cEeeeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCccccccCCCC
Confidence            89999999999999999999999999999999987 489999999999999999998755321       2567899999


Q ss_pred             CccccCCCCC-CCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCC-CCCcccchhhhcchhhhcCCCCeEEEcC
Q psy11618        307 YLPVGLFKNK-ENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMT-RYGLRFSAADAYLTPIAGKRTNLYVLKR  384 (1381)
Q Consensus       307 PL~Vs~~p~~-e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti-~~G~RsSAa~AYL~Pa~~~R~NLtILTn  384 (1381)
                      |++++..+.. ..+|..+++.++++++|++.++|.|+++ +.|.+..+.++ .++.|++++++++.|.. +|+|++|+||
T Consensus       174 ~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~-~~~~~~~~~~~~~~~~r~s~a~~~~~p~~-~r~nl~i~t~  251 (391)
T d1gpea1         174 TVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGH-PRGVSMIMNNLDENQVRVDAARAWLLPNY-QRSNLEILTG  251 (391)
T ss_dssp             SEEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSC-CCEEECCEESBCTTCCBCCHHHHHTTTTT-TCTTEEEEES
T ss_pred             cccccccccccccCHHHHHHHHHHHhcCCceeeccccCc-ccccccccceeeccccccchhhhccCccc-cchhhhhhcc
Confidence            9998765433 3478999999999999999888888887 66666555554 45689999999999988 8999999999


Q ss_pred             cEEEEEEec---CCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc--cchh
Q psy11618        385 SKVTKVIIN---DQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR--VGEN  459 (1381)
Q Consensus       385 A~VtRIlfd---~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP--VGrN  459 (1381)
                      ++|+||++|   +++||+||||.+.+|++++++|+||||||||||+||||||+|||||+++|+++||++++|+|  ||+|
T Consensus       252 a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~~v~dlP~Gvg~n  331 (391)
T d1gpea1         252 QMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGICSM  331 (391)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECCTTCTCB
T ss_pred             ceeeEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcchHHHHhcCCCcHHHHHHCCCCEEEECCcccccc
Confidence            999999997   24599999998867888999999999999999999999999999999999999999999998  7888


Q ss_pred             cccccc
Q psy11618        460 LKLNAQ  465 (1381)
Q Consensus       460 LQDHp~  465 (1381)
                      +|||+.
T Consensus       332 l~dh~~  337 (391)
T d1gpea1         332 MSRELG  337 (391)
T ss_dssp             SCGGGT
T ss_pred             cccCcc
Confidence            888843

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=8.1e-74  Score=644.10  Aligned_cols=294  Identities=30%  Similarity=0.413  Sum_probs=254.1

Q ss_pred             cCCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCC---CccccCCccccccCCcccCcccccccccccccCC
Q psy11618        157 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTP---IHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVR  233 (1381)
Q Consensus       157 ~~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~---~~~~iP~~~~~l~~s~~DW~Y~TePq~~a~~gl~  233 (1381)
                      ...+++|||||||||+|||++|+||||++++||+|||||++.+   +..+.|..+....++++||.|+++|+.     .+
T Consensus        12 ~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~~~-----~~   86 (385)
T d1cf3a1          12 DVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-----TN   86 (385)
T ss_dssp             GTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-----TT
T ss_pred             cccCCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccCcC-----CC
Confidence            3456789999999999999999999999889999999998643   234566666677788899999998764     58


Q ss_pred             CceeecccccccCccccccceEEecCCccchHHHhhc-CCCCCChhhHHHHHHHhcccccCCcc-------cCCCCCCCC
Q psy11618        234 NARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKL-GYNGWGYDETLKYFVKSEDYRSVIYN-------ESKAVHGTQ  305 (1381)
Q Consensus       234 ~r~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~l-Gn~GWswedLlPYFkKsE~~~~p~~~-------~d~~~HG~~  305 (1381)
                      ||+..++|||++||||++|+|+|.|++++|||.|++. |++||+||+++|||+|+|++..+..+       .+...||.+
T Consensus        87 ~r~~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~  166 (385)
T d1cf3a1          87 NQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVN  166 (385)
T ss_dssp             SCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSS
T ss_pred             CceeeecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCcccccccccccccccCCc
Confidence            8999999999999999999999999999999999986 78999999999999999998765421       246789999


Q ss_pred             CCccccCCCCC-CCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCC-CCcccchhhhcchhhhcCCCCeEEEc
Q psy11618        306 GYLPVGLFKNK-ENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTR-YGLRFSAADAYLTPIAGKRTNLYVLK  383 (1381)
Q Consensus       306 GPL~Vs~~p~~-e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~-~G~RsSAa~AYL~Pa~~~R~NLtILT  383 (1381)
                      ||.++++.... ...|..+.+.++++++|++...|.|++. +.|.+..+.++. .++|++++++|+.|++ +|+|++|++
T Consensus       167 ~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~p~~-~~~nl~i~t  244 (385)
T d1cf3a1         167 GTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGD-PHGVSMFPNTLHEDQVRSDAAREWLLPNY-QRPNLQVLT  244 (385)
T ss_dssp             SSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSC-CCEEECCCBSBCTTCBBCCHHHHHTGGGT-TCTTEEEEE
T ss_pred             ccccccccccccccCHHHHHHHHHHHHcCCCCcCCccccc-ccccccccccccccccchhhhhhhcCchh-cCCcccccC
Confidence            99988765433 3478999999999999999988999887 777766666554 4566778889999988 899999999


Q ss_pred             CcEEEEEEecC---CCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCccc
Q psy11618        384 RSKVTKVIIND---QNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLRVG  457 (1381)
Q Consensus       384 nA~VtRIlfd~---g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLPVG  457 (1381)
                      +++|+||++|+   +.||+|||+.+++|++++++|+||||||||||+||||||+|||||+++|+++|||+++|+|||
T Consensus       245 ~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGIGp~~~L~~~gI~~~~dlP~g  321 (385)
T d1cf3a1         245 GQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVG  321 (385)
T ss_dssp             SCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCCTT
T ss_pred             CceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhcCCCcHHHHHHCCCCeEEECCcc
Confidence            99999999982   238999999887899999999999999999999999999999999999999999888887754

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=100.00  E-value=7.3e-65  Score=567.21  Aligned_cols=264  Identities=25%  Similarity=0.330  Sum_probs=210.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCcc--ccC-Ccccc--cc---CCcccCcccccccccccccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHS--RIP-GMSSV--LS---LSEFDHAYLAEPSQFAGLGV  232 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~~--~iP-~~~~~--l~---~s~~DW~Y~TePq~~a~~gl  232 (1381)
                      ++|||||||||+|||++|+||||+ ++||+|||||++.+...  ..+ .+...  ..   ....+|.+.++||++    .
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~-g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~   75 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPF----W   75 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCT----T
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhC-CCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCcc----c
Confidence            369999999999999999999997 78999999998543221  111 11111  11   112456677778764    5


Q ss_pred             CCceeecccccccCccccccceEEecCCccchHHHhhcCCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccccC
Q psy11618        233 RNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGL  312 (1381)
Q Consensus       233 ~~r~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~  312 (1381)
                      +++...++|||++||||+||+|+|.|+++.|||+|+  |. .|+|+|++|||+|+|+..+.     +.+|+.+|+..+  
T Consensus        76 ~~~~~~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~--gw-p~~~~~l~py~~~~e~~~~~-----~~~~~~~g~~~~--  145 (360)
T d1kdga1          76 WCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV--GW-PSSWTNHAPYTSKLSSRLPS-----TDHPSTDGQRYL--  145 (360)
T ss_dssp             BCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGG--TC-CGGGSCCHHHHHHHHHHSCC-----BSCCSTTSCCCS--
T ss_pred             CCccccccceeeecchhccccccccccchhhheecc--cc-cccccchhhhhhhhhccccc-----cceecCCCcccc--
Confidence            788899999999999999999999999999999985  21 24899999999999988643     345677776543  


Q ss_pred             CCCCCCchHHHHHHHHHHHcCCCCC--CCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEE
Q psy11618        313 FKNKENNIIREIFETSAQELGYPCP--KDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKV  390 (1381)
Q Consensus       313 ~p~~e~~pl~~~f~eA~eeLG~p~~--~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRI  390 (1381)
                            ++..+.+.+++++.|++..  +|.++.. +.|+++++.++.+|+|+|+.++|++|+. +|+|++|+||++|+||
T Consensus       146 ------~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~~G~R~s~~~~yl~~a~-~r~nl~i~t~~~V~rI  217 (360)
T d1kdga1         146 ------EQSFNVVSQLLKGQGYNQATINDNPNYK-DHVFGYSAFDFLNGKRAGPVATYLQTAL-ARPNFTFKTNVMVSNV  217 (360)
T ss_dssp             ------CHHHHHHHHHHHTTTCEECCGGGSTTCC-TTEEEECCBCEETTEECHHHHTHHHHHH-TCTTEEEECSCCEEEE
T ss_pred             ------cchhHHHHHHHHHhhccCCCcccCCCcc-ccccceeeeeccccccccccchhhhhhh-cccccccccCcEEEEE
Confidence                  3445667788888887533  2444444 5566667778889999999999999998 8999999999999999


Q ss_pred             EecCCCeEEEEEEEec---CCeEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCC
Q psy11618        391 IINDQNVATGVEYVNS---KGETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKI  448 (1381)
Q Consensus       391 lfd~g~RAtGVE~vd~---~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGI  448 (1381)
                      ++| ++||+||++.+.   ++++.+++|+||||||||||+||||||+|||||+++|+++||
T Consensus       218 ~~d-~~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl~SGIGp~~~L~~~gi  277 (360)
T d1kdga1         218 VRN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQS  277 (360)
T ss_dssp             EEE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHT
T ss_pred             EEe-CCEEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHHHhcCCCchhhhHHhhc
Confidence            998 789999999864   356788999999999999999999999999999999988775

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=100.00  E-value=1.2e-61  Score=540.92  Aligned_cols=275  Identities=28%  Similarity=0.323  Sum_probs=223.9

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCccccCCccccccCCcccCcccccccccccccCCCceee
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSVLSLSEFDHAYLAEPSQFAGLGVRNARIK  238 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~~~iP~~~~~l~~s~~DW~Y~TePq~~a~~gl~~r~i~  238 (1381)
                      ..++|||||||||+|||++|+||||+  +||+|||||+++....+++.......+.+.+|.+++++|+.    .+++++.
T Consensus        23 ~~~~YD~IIVGsG~aG~vlA~rLae~--~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~   96 (351)
T d1ju2a1          23 LEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERF----VSEDGID   96 (351)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHHTTT--SCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEEE----ECTTSCE
T ss_pred             ccCCccEEEECccHHHHHHHHHhcCC--CCEEEEecCCCCcCccccccchhhhccCcCCCCCCCccccc----cCCCcee
Confidence            44689999999999999999999985  89999999986533322222111122224567777777763    5778899


Q ss_pred             cccccccCccccccceEEecCCccchHHHhhcCCCCCChhhHHHHHHHhcccccCCcccCCCCCCCCCCccccCCCCCCC
Q psy11618        239 ITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKEN  318 (1381)
Q Consensus       239 ~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~~e~  318 (1381)
                      ++|||++||||+||+|+|.|++++|||.|.    ++|+|+++.|||++.|+.....                   +..  
T Consensus        97 ~~rG~~lGGsS~in~~~~~R~~~~dfd~~~----~~W~~~~~~p~~~~~e~~~~~~-------------------~~~--  151 (351)
T d1ju2a1          97 NVRGRVLGGTSIINAGVYARANTSIYSASG----VDWDMDLVNQTYEWVEDTIVYK-------------------PNS--  151 (351)
T ss_dssp             EEEECBTTGGGGTSCCEECBCCTTSSTTSS----SCCCHHHHHHHHHHHHHHHCBC-------------------CCC--
T ss_pred             eeeeeecccccccceeeeccCCHHHHhhcc----cccChhHhCcceeecccccccc-------------------ccc--
Confidence            999999999999999999999999999995    6899999999999999764211                   011  


Q ss_pred             chHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEec--CCC
Q psy11618        319 NIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIIN--DQN  396 (1381)
Q Consensus       319 ~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd--~g~  396 (1381)
                      ++......+++++.|.+...|.|... +.+.++.+.+++++.|++++++|++++  +|+|++|+++++|+||.+|  +++
T Consensus       152 ~~~~~~~~~a~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~a--~~~nl~i~~~~~V~rv~~~~~~g~  228 (351)
T d1ju2a1         152 QSWQSVTKTAFLEAGVHPNHGFSLDH-EEGTRITGSTFDNKGTRHAADELLNKG--NSNNLRVGVHASVEKIIFSNAPGL  228 (351)
T ss_dssp             CHHHHHHHHHHHHTTCCCEEEECCBC-CSEEEECEESBCTTSBBCCGGGGGGGS--CTTTEEEEESCEEEEEEECCSSSC
T ss_pred             ccccccccchhhhhcccccccccccc-ccccccccccccCCCcccccchhhccc--hhhhhhhhccchhhceeeeccccc
Confidence            34556677888899988776777665 556666666777777888888999774  6899999999999999998  356


Q ss_pred             eEEEEEEEecCCe--EEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccCCCCcccCCc-cchhccccccCC
Q psy11618        397 VATGVEYVNSKGE--TVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEVKIPVKQDLR-VGENLKLNAQFT  467 (1381)
Q Consensus       397 RAtGVE~vd~~Gr--~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~lGIpVVvDLP-VGrNLQDHp~v~  467 (1381)
                      ||+||++.+.+|+  +..++|+||||||||||+||||||+|||||++||+++|||+++|+| ||||||||+..+
T Consensus       229 ~a~gV~~~~~~g~~~~~~v~a~~eVILsAGaI~TP~LLl~SGIGp~~~L~~~gI~~~~dlPgVG~NL~DH~~~~  302 (351)
T d1ju2a1         229 TATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKVLDG  302 (351)
T ss_dssp             BEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTESCBTTTBCT
T ss_pred             eeeEEEEEeCCCceEEEEeecCcEEEEeCccccCHHHHHHcCCCCHHHHHHcCCCeeccCCCcccccccCcCcc
Confidence            9999999986654  4468899999999999999999999999999999999999999999 999999998763

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=100.00  E-value=3.8e-43  Score=380.01  Aligned_cols=244  Identities=18%  Similarity=0.162  Sum_probs=146.7

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCc--cccCCccccccCCccc--------------------
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIH--SRIPGMSSVLSLSEFD--------------------  217 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~--~~iP~~~~~l~~s~~D--------------------  217 (1381)
                      +.+|||||||||+||+++|+||||+ |+||+|||||++....  ...+........+..+                    
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~-G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV   80 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhC-CCeEEEEecCCCCCCcccccchhhcccccccccccccccccccccccccccccc
Confidence            4689999999999999999999995 9999999999864221  1111111000000000                    


Q ss_pred             --------Cccc-----ccccccccccCCCceeecccccccCccccccceEEecCCccchHHHhhcCC----CCC--Chh
Q psy11618        218 --------HAYL-----AEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGY----NGW--GYD  278 (1381)
Q Consensus       218 --------W~Y~-----TePq~~a~~gl~~r~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn----~GW--swe  278 (1381)
                              |...     ...++.  .....+...+.+++.+||+|..|++.+.|..+.|++.|.+.+.    ..|  +|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~  158 (379)
T d2f5va1          81 VDTLSPTSWQASTFFVRNGSNPE--QDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYT  158 (379)
T ss_dssp             CCCSCTTSCCCSSCCCCTTCCTT--CCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHH
T ss_pred             ccCCCCCCccCCCeEeccCCCch--hhhhhccccchhhhcCCCCccccccEeccCCHHHhhhccccCCCccCCcCccchh
Confidence                    0000     000000  0011122345678899999999999999999999988765321    234  566


Q ss_pred             hHHHHHHHhcccccCCcccCCCCCCCCCCccccCCCCCCCchHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCC
Q psy11618        279 ETLKYFVKSEDYRSVIYNESKAVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRY  358 (1381)
Q Consensus       279 dLlPYFkKsE~~~~p~~~~d~~~HG~~GPL~Vs~~p~~e~~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~  358 (1381)
                      +++|||.+.|+....                         ....+...+.....+.+.. +........+.+     ..+
T Consensus       159 ~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~  207 (379)
T d2f5va1         159 KAESYFQTGTDQFKE-------------------------SIRHNLVLNKLAEEYKGQR-DFQQIPLAATRR-----SPT  207 (379)
T ss_dssp             HHHHHHTEESCTTTT-------------------------CHHHHHHHHHHHHHTTTSS-CCEECCEEEEEE-----ETT
T ss_pred             hhhhhhhHHHHHHHH-------------------------HHHhcCCCCCccccccccc-CcccccchhccC-----CCC
Confidence            677776655543211                         1112222233222211100 000000000000     011


Q ss_pred             Ccccchhhhcch------hhhcCCCCeEEEcCcEEEEEEec-CCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchhhHH
Q psy11618        359 GLRFSAADAYLT------PIAGKRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNS-KGETVRVTANKEVILTAGAIANAQ  430 (1381)
Q Consensus       359 G~RsSAa~AYL~------Pa~~~R~NLtILTnA~VtRIlfd-~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~SPq  430 (1381)
                      ..|+++.+++..      +.+ .|+|++|+++++|+||++| +++||+||++.|. +|++++++| ||||+|||+++|||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a-~~vilaaGa~~tp~  285 (379)
T d2f5va1         208 FVEWSSANTVFDLQNRPNTDA-PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKA-DVYVLTAGAVHNTQ  285 (379)
T ss_dssp             EEEECCHHHHCCCCCEEETTE-EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEE-EEEEECSCHHHHHH
T ss_pred             CCCcCCCCcccchhhcchHHh-cCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEec-eEEEeccCccCCHH
Confidence            222333322222      223 5789999999999999998 5679999999986 688889999 69999999999999


Q ss_pred             HHHHcCCCC
Q psy11618        431 LLLLSGIGP  439 (1381)
Q Consensus       431 LLmlSGIGP  439 (1381)
                      +|++||||+
T Consensus       286 lL~~Sg~~~  294 (379)
T d2f5va1         286 LLVNSGFGQ  294 (379)
T ss_dssp             HHHHTTSSC
T ss_pred             HHhhccccc
Confidence            999999875

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=100.00  E-value=5.4e-41  Score=369.51  Aligned_cols=281  Identities=19%  Similarity=0.171  Sum_probs=196.6

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCccccCCcccc-------------------ccCCcccCc
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHSRIPGMSSV-------------------LSLSEFDHA  219 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~~~iP~~~~~-------------------l~~s~~DW~  219 (1381)
                      ++++||+||||||+||+++|+||||+ |+||+|||||++.+...+.+.....                   .....++|+
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLaea-G~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGIN   82 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCC
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcccccccccccccccccccccccccccccccccccccC
Confidence            56789999999999999999999985 9999999999753211111100000                   001134566


Q ss_pred             ccccccccccccCCCceeecccccccCccccccceEEecCCccchHHHhhcCCCCCChhhHHHHHHHhcccccCCcccCC
Q psy11618        220 YLAEPSQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESK  299 (1381)
Q Consensus       220 Y~TePq~~a~~gl~~r~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GWswedLlPYFkKsE~~~~p~~~~d~  299 (1381)
                      +.++++.......+++...+++||++||+|.+|+|++.|++++|||.|..   .+|.+++++|||+++|+.......   
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~---~~~~~~~~~~~y~~~e~~lgv~~~---  156 (370)
T d3coxa1          83 KSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILP---SVDSNEMYNKYFPRANTGLGVNNI---  156 (370)
T ss_dssp             CBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHTCBCC---
T ss_pred             cccccccccccccCCCcceeeeeccccccccccCceeccCCHHHhhcccc---cCCcHHHHHHHHHHHHHhcCCccc---
Confidence            66665554444456677889999999999999999999999999999974   234467899999999987643311   


Q ss_pred             CCCCCCCCccccCCCCCCCchHHHHHHHHHHHcCCCCCC-----CCC-------CCCCCcccccCCCCCCCCcccchhhh
Q psy11618        300 AVHGTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK-----DMN-------DRYVDVGFAELPGMTRYGLRFSAADA  367 (1381)
Q Consensus       300 ~~HG~~GPL~Vs~~p~~e~~pl~~~f~eA~eeLG~p~~~-----D~N-------~g~~~~G~s~~~~ti~~G~RsSAa~A  367 (1381)
                             +-.....+..  .+..+.+.+++++.|++...     +.+       +...+...+.....++++.|+|+.++
T Consensus       157 -------~~~~~~~~~~--~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~  227 (370)
T d3coxa1         157 -------DQAWFESTEW--YKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKT  227 (370)
T ss_dssp             -------CHHHHHHCGG--GHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCSTTCCSSSBCCGGGT
T ss_pred             -------cCCcccCCCC--ccHHHHHHHHHHHcCCccccccccccccccccccccccccceecccccccccccccChHHH
Confidence                   1111111122  57888899999999985321     111       11101122222233456788999999


Q ss_pred             cchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEE--ecCC---eEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCc
Q psy11618        368 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYV--NSKG---ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAH  442 (1381)
Q Consensus       368 YL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~v--d~~G---r~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~  442 (1381)
                      |++++. +++|++|+++|+|+||++| ++++++|+++  +.+|   ++++++| |+|||||||++||||||+|+      
T Consensus       228 ~L~~a~-~~g~~~i~t~~~V~~I~~~-~~~~~~V~v~~~~~~~~~~~~~~~~A-~~VILaAGai~Tp~LLL~S~------  298 (370)
T d3coxa1         228 YLAQAA-ATGKLTITTLHRVTKVAPA-TGSGYSVTMEQIDEQGNVVATKVVTA-DRVFFAAGSVGTSKLLVSMK------  298 (370)
T ss_dssp             HHHHHH-HTTCEEEECSEEEEEEEEC-SSSSEEEEEEEECTTSCEEEEEEEEE-EEEEECSHHHHHHHHHHHHH------
T ss_pred             HHHHHH-hCCCcEEEecCcEEEEEEc-CCCeEEEEEEEeCCccceeeEEEEEC-CEEEEeeCHHHhHHHHHhCC------
Confidence            999888 8999999999999999998 4556666664  3333   3467889 58999999999999999993      


Q ss_pred             cccCCCCcccCCccchhccccccC
Q psy11618        443 LDEVKIPVKQDLRVGENLKLNAQF  466 (1381)
Q Consensus       443 Le~lGIpVVvDLPVGrNLQDHp~v  466 (1381)
                       ++.++|...| .||||++||...
T Consensus       299 -~~~~l~~~s~-~vG~~~g~~~~~  320 (370)
T d3coxa1         299 -AQGHLPNLSS-QVGEGWGVLLNK  320 (370)
T ss_dssp             -HTTSSTTSCT-TTTCCBSSCTTT
T ss_pred             -CCCCCCCCCH-hhCCCcccccCc
Confidence             1234444444 599999999764

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=100.00  E-value=4.2e-39  Score=353.41  Aligned_cols=278  Identities=16%  Similarity=0.129  Sum_probs=189.6

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCCCCcc-ccCCcccccc-CCcccCcc--cccc--------------
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDTPIHS-RIPGMSSVLS-LSEFDHAY--LAEP--------------  224 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~~~~~-~iP~~~~~l~-~s~~DW~Y--~TeP--------------  224 (1381)
                      +|+||||||+||+++|+||||+ |+||+|||||++.+... ..+....... ....+|..  ...|              
T Consensus         3 v~VIVVGsG~aG~v~A~rLaea-G~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNI   81 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCBC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHC-cCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCccc
Confidence            6999999999999999999985 99999999997542211 1111111100 01122211  1111              


Q ss_pred             --cccccccCCCceeecccccccCccccccceEEecCCccchHHHhhcCCCCCChhhHHHHHHHhcccccCCcccCCCCC
Q psy11618        225 --SQFAGLGVRNARIKITAGKGLGGSSAVQNILYQRGTSYDYENFAKLGYNGWGYDETLKYFVKSEDYRSVIYNESKAVH  302 (1381)
Q Consensus       225 --q~~a~~gl~~r~i~~pRGKvLGGSSsINgmvy~RGs~~DFD~Wa~lGn~GWswedLlPYFkKsE~~~~p~~~~d~~~H  302 (1381)
                        +.......+++...+++|+++||||.+|++++.|+++.|||.|..   ..|.++++.|||+|+|+...+....     
T Consensus        82 ~~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~---~~~~~~~l~pyy~~ae~~l~~~~~~-----  153 (367)
T d1n4wa1          82 DPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILP---RVDSSEMYDRYFPRANSMLRVNHID-----  153 (367)
T ss_dssp             CCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHTCBCCC-----
T ss_pred             ccccCccccccCCccceeeEEecCCCCceecceeeccChhHhhcccc---ccCcHHHHHHHHHHHHHHhCCCCCC-----
Confidence              110011234566788999999999999999999999999999963   3456788999999999886443210     


Q ss_pred             CCCCCccccCCCCCCCchHHHHHHHHHHHcCCCCCC-----CC-------CCCCCCcccccCCCCCCCCcccchhhhcch
Q psy11618        303 GTQGYLPVGLFKNKENNIIREIFETSAQELGYPCPK-----DM-------NDRYVDVGFAELPGMTRYGLRFSAADAYLT  370 (1381)
Q Consensus       303 G~~GPL~Vs~~p~~e~~pl~~~f~eA~eeLG~p~~~-----D~-------N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~  370 (1381)
                           -+....+.  ..+..+.+.+++++.|++...     +.       ++..++++++....++.++.|+|+.++|++
T Consensus       154 -----~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~k~s~~~~yl~  226 (367)
T d1n4wa1         154 -----TKWFEDTE--WYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLA  226 (367)
T ss_dssp             -----HHHHHHCG--GGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSSBCCTTTTHHH
T ss_pred             -----CCccccCC--CChHHHHHHHHHHHcCcccccccchhhcCCcccccccccCcccccccccccccccccChhHhhhH
Confidence                 00000111  146677888999999875321     10       111112222222223456778999999999


Q ss_pred             hhhcCCCCeEEEcCcEEEEEEec-CCCeEEEEEEEecCC---eEEEEecCcEEEEcCCchhhHHHHHHcCCCCCCccccC
Q psy11618        371 PIAGKRTNLYVLKRSKVTKVIIN-DQNVATGVEYVNSKG---ETVRVTANKEVILTAGAIANAQLLLLSGIGPKAHLDEV  446 (1381)
Q Consensus       371 Pa~~~R~NLtILTnA~VtRIlfd-~g~RAtGVE~vd~~G---r~~tV~ArKEVILSAGAI~SPqLLmlSGIGPkd~Le~l  446 (1381)
                      ++. +++|++|+++|+|+||+.+ +++++++|++.+.+|   ++++++| |+|||||||++||||||+|+       ++.
T Consensus       227 ~a~-~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~A-k~VVLaAGai~Tp~LLl~S~-------~~g  297 (367)
T d1n4wa1         227 AAL-GTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISC-RYLFLGAGSLGSTELLVRAR-------DTG  297 (367)
T ss_dssp             HHH-HTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEE-EEEEECSHHHHHHHHHHHHH-------HTT
T ss_pred             HHH-hCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEec-CEEEEecchhcCHHHHHhCC-------CCC
Confidence            888 8999999999999999998 566889999987543   3467888 68999999999999999994       122


Q ss_pred             CCCcccCCccchhccccccC
Q psy11618        447 KIPVKQDLRVGENLKLNAQF  466 (1381)
Q Consensus       447 GIpVVvDLPVGrNLQDHp~v  466 (1381)
                      ++|...| .||||.+||...
T Consensus       298 ~l~~~s~-~lG~~~~~~l~~  316 (367)
T d1n4wa1         298 TLPNLNS-EVGAGWGCVLGK  316 (367)
T ss_dssp             SSTTCCT-TTTCCBSSCTTT
T ss_pred             CCCCccH-hhcCCccccccc
Confidence            3444444 499999999765

>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.91  E-value=2.8e-26  Score=238.97  Aligned_cols=103  Identities=15%  Similarity=0.102  Sum_probs=92.2

Q ss_pred             CCCeEEEEEeecccCcCcEEEeecCCCCC-CccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccCCccCC
Q psy11618        627 RTDMGVISMSLVNPKSCGKVTLKSADPLA-PPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACS  705 (1381)
Q Consensus       627 ~~~~~tI~v~Ll~P~SRGsV~L~SsDP~d-~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~  705 (1381)
                      ..+++++.++.++|+|||+|||+|+||.+ +|.|||||++||.|++++++|+|.+||++++++++++..++.   .||++
T Consensus        93 ~~~~~~~~~~~l~P~SrG~V~l~S~dP~~~pp~I~pnyl~~~~D~~~~~~~~r~~~~i~~t~~l~~~~~~e~---~Pg~~  169 (196)
T d1gpea2          93 TEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGET---LPGYN  169 (196)
T ss_dssp             CTTEEEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHHHHHHHHTSTTHHHHEEEEE---ESGGG
T ss_pred             CCCceEEeeeccCCccceEEEeeCCCchhcccccchhhcCCchHHHHHHHHHHHHHHHHhhHHHHhhccccc---CCCcc
Confidence            34678999999999999999999999987 559999999999999999999999999999999999987765   35554


Q ss_pred             CCCCCCchhHHHHHhcccCCCcccccC
Q psy11618        706 QYPWRSTHSWTCYIRHLTTTTSNPVGT  732 (1381)
Q Consensus       706 ~~~~~SDEeIe~yIR~~a~T~yHPvGT  732 (1381)
                      ..+..|||||++|||+++.|.|||+||
T Consensus       170 ~~~~~sde~~~~~ir~~~~t~~Hp~GT  196 (196)
T d1gpea2         170 LVQNATLSQWSDYVLQNFRPNWHAVSS  196 (196)
T ss_dssp             SCTTCCHHHHHHHHHHSCEECSCCBCT
T ss_pred             cCCCCCHHHHHHHHHhcCeecccCCCC
Confidence            444568999999999999999999998

>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.90  E-value=9.1e-26  Score=235.08  Aligned_cols=102  Identities=17%  Similarity=0.108  Sum_probs=90.4

Q ss_pred             CCeEEEEEeecccCcCcEEEeecCCCC-CCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccCCccCCC
Q psy11618        628 TDMGVISMSLVNPKSCGKVTLKSADPL-APPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQ  706 (1381)
Q Consensus       628 ~~~~tI~v~Ll~P~SRGsV~L~SsDP~-d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~  706 (1381)
                      .+.+++.++.++|+|||+|+|+|+||. ++|.|||||++||.|++++++|+|.+||++++++++++..++..   ||++.
T Consensus        94 ~~~~~~~~~~l~P~SrG~V~l~S~dP~~d~P~I~~nyls~~~D~~~~~~~~r~~~~i~~~~~~~~~~~~e~~---Pg~~~  170 (196)
T d1cf3a2          94 AGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETI---PGDNL  170 (196)
T ss_dssp             TTEEEEEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGTEEEEEE---SGGGS
T ss_pred             CCceeeeeeecCCCcceEEEeeCCCcccCCCccCHhhcCCchHHHHHHHHHHHHHHHHHhHHHHhccccccC---CCcCC
Confidence            456888899999999999999999996 79999999999999999999999999999999999999877653   44333


Q ss_pred             CCCCCchhHHHHHhcccCCCcccccC
Q psy11618        707 YPWRSTHSWTCYIRHLTTTTSNPVGT  732 (1381)
Q Consensus       707 ~~~~SDEeIe~yIR~~a~T~yHPvGT  732 (1381)
                      ....+||+|++|||+++.|.|||+||
T Consensus       171 ~~d~~~~~~~~~ir~~~~t~~Hp~GT  196 (196)
T d1cf3a2         171 AYDADLSAWTEYIPYHFRPNYHGVGT  196 (196)
T ss_dssp             CTTCCHHHHHHHGGGSCEECSCCBCT
T ss_pred             CCchhHHHHHHHHHhcCeeccccCCC
Confidence            33457789999999999999999998

>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.89  E-value=1.1e-23  Score=215.39  Aligned_cols=148  Identities=11%  Similarity=0.005  Sum_probs=111.3

Q ss_pred             HHHHHHHHHcCCCCCccccccceEEEeecCCC-CCCCCeeeeeeccccccchhhhhhhhccccchhHHHHHhccCCCCCe
Q psy11618        552 QEMVFKYLVNRIGPLSNAGLWSFTGYIDTLQN-TARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDM  630 (1381)
Q Consensus       552 ~~~~~eYl~~~sGPLss~g~~e~~gFl~S~~~-~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~  630 (1381)
                      .++..+|..+++||+++.+ .+..++.+.+.. ...|++|++..+......          +         ..+.+..+.
T Consensus        32 ~~~~~~Yl~~rtGpla~~~-~~~~~~~~~~~~d~~~p~~q~~~~~~~~~~~----------~---------~~~~~~~~~   91 (181)
T d1kdga2          32 PADAAQYLANQSGVFAGAS-PKLNFWRAYSGSDGFTRYAQGTVRPGAASVN----------S---------SLPYNASQI   91 (181)
T ss_dssp             HHHHHHHHHHSCSGGGSCS-CCEEEEEEEECTTSCEEEEEEEEEESCSCCC----------C---------SSCCCGGGE
T ss_pred             HHHHHHHHhcCCcccccch-hhcccccccCCcccCCccceeecCceeeccC----------C---------ccCCCCCCc
Confidence            4566789999999998754 456666553322 356788877755432100          0         011223456


Q ss_pred             EEEEEeecc-cCcCcEEEeecCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccCCccCCCCCC
Q psy11618        631 GVISMSLVN-PKSCGKVTLKSADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLEACSQYPW  709 (1381)
Q Consensus       631 ~tI~v~Ll~-P~SRGsV~L~SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~plPg~~~~~~  709 (1381)
                      +++.+.+++ |+|||+|+|+|  |.++|.||+||++||.|++++++|+|++||++++++++++.       .|+    +.
T Consensus        92 ~~~~~~~l~~P~SRG~V~L~S--p~~~P~I~pnyLs~p~D~~~lv~~i~~~r~~~~~~p~~~~~-------~p~----~~  158 (181)
T d1kdga2          92 FTITVYLSTGIQSRGRIGIDA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMI-------TPD----VT  158 (181)
T ss_dssp             EEEEEEECTTCCCCBEEEECT--TCCEEEEECCTTCSHHHHHHHHHHHHHHTTTGGGSTTCEEE-------ESC----TT
T ss_pred             eEEEEeeccCCCCCCeEEeCC--CCCCCcccccccCCHHHHHHHHHHHHHHHHHHcCCCCCccc-------cCC----CC
Confidence            788787876 99999999987  67899999999999999999999999999999998765432       122    23


Q ss_pred             CCchhHHHHHhcccCCCcccccC
Q psy11618        710 RSTHSWTCYIRHLTTTTSNPVGT  732 (1381)
Q Consensus       710 ~SDEeIe~yIR~~a~T~yHPvGT  732 (1381)
                      .|||||.+++|+++.|++||+||
T Consensus       159 ~t~~~~~~~~~~~~~~~~H~vGT  181 (181)
T d1kdga2         159 QTLEEYVDAYDPATMNSNHWVSS  181 (181)
T ss_dssp             SCHHHHHHHSCGGGGCCSCCBCT
T ss_pred             CCHHHHHHHHHHhCCcccCCCCC
Confidence            69999999999999999999998

>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.83  E-value=2.8e-21  Score=197.95  Aligned_cols=149  Identities=15%  Similarity=0.123  Sum_probs=111.3

Q ss_pred             CCCccccccceEEEeecCCCCCCCCeeeeeeccccccchhhhhhhhccccchhHHHHHhccCCCCCeEEEEEeecccCcC
Q psy11618        564 GPLSNAGLWSFTGYIDTLQNTARPDLEIHLLYFQQNDIRNMCKIKRAYDFNDEVQTAYVNLNKRTDMGVISMSLVNPKSC  643 (1381)
Q Consensus       564 GPLss~g~~e~~gFl~S~~~~~~PDIq~~~~p~s~~~~d~~~~vk~~~g~~~~~~~~~~~p~~~~~~~tI~v~Ll~P~SR  643 (1381)
                      +|.+. +..+.+|+.+++...+.|++|++..+.+.. .+                  ...+.++...+++...+++|+||
T Consensus        16 ~P~~~-s~~q~~G~~~~~~~~~~p~lq~~~~p~~~~-~~------------------~~~p~~~~~~~~i~~~l~~P~Sr   75 (170)
T d1ju2a2          16 NPIEP-TIVTVLGISNDFYQCSFSSLPFTTPPFGFF-PS------------------SSYPLPNSTFAHFASKVAGPLSY   75 (170)
T ss_dssp             SCCCC-CCCCEEEECSSEEEEEEEECCCSSCCBTTB-SS------------------SCCCCCSSCEEEEEEEESSCSCC
T ss_pred             CCccc-chhhEEEEecCchhhcCCCcccccCccccc-cc------------------CCCCCCCCCeeEeecccCCcccc
Confidence            45443 234567777765444677777766553320 00                  01233445667888999999999


Q ss_pred             cEEEee-cCCCCCCccccCCCCCChhhHHHHHHHHHHHHHHhcCHHHHHhcccccccCCc----cCCCCC-CCCchhHHH
Q psy11618        644 GKVTLK-SADPLAPPCIDTGILSEPEDLATLIRGTDYITRLEQTEAIRLAGGTLMSLNLE----ACSQYP-WRSTHSWTC  717 (1381)
Q Consensus       644 GsV~L~-SsDP~d~PvIDpNYLSdP~Dle~LveGVR~arrIl~Tp~Lk~~g~~e~~~plP----g~~~~~-~~SDEeIe~  717 (1381)
                      |+|+|+ |+||.++|.||+||++||.|++.+++|+|.+||++++++++++..++..+...    +.++.+ .++||+|++
T Consensus        76 G~v~L~~S~dp~~~P~i~~nyl~~~~D~~~~v~~~~~~r~i~~~~~~~~~~~~e~~p~~~~~~~~~p~p~~~~dde~l~~  155 (170)
T d1ju2a2          76 GSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFET  155 (170)
T ss_dssp             EEEECSCSSCTTSCCEECCCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGGCSSCCSTTCSCCBSSSCCCSCTTCHHHHHH
T ss_pred             ceEEecCCCCcccCcccCcccccCchhHHHHHHHHHHHHHHHcChhhhhccccccccccccccccCCCccCCCCHHHHHH
Confidence            999997 89999999999999999999999999999999999999999998877642210    111222 357888999


Q ss_pred             HHhcccCCCcccccC
Q psy11618        718 YIRHLTTTTSNPVGT  732 (1381)
Q Consensus       718 yIR~~a~T~yHPvGT  732 (1381)
                      |+|+++.|.||++|.
T Consensus       156 ~iR~~~~T~yHyhgg  170 (170)
T d1ju2a2         156 FCRESVASYWHYHGG  170 (170)
T ss_dssp             HHHHHCEECSCCEES
T ss_pred             HHHhcCEeccCCCCc
Confidence            999999999999984

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.55  E-value=1.1e-14  Score=155.33  Aligned_cols=57  Identities=19%  Similarity=0.256  Sum_probs=47.9

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh-HHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN-AQLL  432 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S-PqLL  432 (1381)
                      .+.+.+++.+++|++++.|+++|++||.+.+.++++++++| |.||+|+|.++. ++.+
T Consensus       156 ~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~A-k~VVlAtGG~~~n~~~~  213 (308)
T d1y0pa2         156 VKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKA-DAVILATGGFAKNNERV  213 (308)
T ss_dssp             HHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEEC-SEEEECCCCCTTCHHHH
T ss_pred             HhccceEEEeeccchhhhhcccccccccccccccceeEeec-CeEEEccCcccccHHHH
Confidence            46799999999999999986789999999987777889999 589999998764 4433

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.46  E-value=5.8e-14  Score=151.30  Aligned_cols=53  Identities=19%  Similarity=0.250  Sum_probs=45.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIAN  428 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~S  428 (1381)
                      .+.+.+|+++++|++++.|+++|++||.+.++++++++++| |.||+|+|.++.
T Consensus       163 ~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~A-k~VIlAtGG~~~  215 (322)
T d1d4ca2         163 VKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKA-DAVVIAAGGFAK  215 (322)
T ss_dssp             HHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEEC-SEEEECCCCCTT
T ss_pred             HhcCceEEEeeecccccccccccccceEEEeecccEEEEeC-CeEEEcCCCccc
Confidence            35689999999999999876679999999987677778888 589999997753

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=3.4e-14  Score=138.02  Aligned_cols=38  Identities=29%  Similarity=0.489  Sum_probs=34.5

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+++||+||||||.||+++|++||++ |+||+|+|+++.
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~-G~~V~vlE~~~~   39 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDH   39 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCC
Confidence            45689999999999999999999976 999999999764

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.37  E-value=9.8e-13  Score=142.04  Aligned_cols=52  Identities=23%  Similarity=0.333  Sum_probs=45.9

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      ++.+.+++++++|+++..++++|++||.+.+.+|++++++| |-||+|+|.++
T Consensus       159 ~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~A-k~VVlAtGG~~  210 (317)
T d1qo8a2         159 KEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA-KSVVLATGGYG  210 (317)
T ss_dssp             HHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEE-EEEEECCCCCT
T ss_pred             hhccceeeeccchhheeecccccceeeEeecccceEEEEec-cceEEeccccc
Confidence            46789999999999998876789999999987788888888 68999999875

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.35  E-value=1.5e-12  Score=136.20  Aligned_cols=36  Identities=33%  Similarity=0.553  Sum_probs=33.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ++||+||||||.+|+.+|.+|+++ |.+|+|||+++.
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~-G~~V~viE~~~~   37 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDP   37 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence            579999999999999999999986 899999999753

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=2e-11  Score=132.33  Aligned_cols=56  Identities=14%  Similarity=0.315  Sum_probs=46.6

Q ss_pred             chhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618        369 LTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       369 L~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      +..+. +++|++++++++|++++.| +++++||...+. +|+.+.++| |-||+|+|.++
T Consensus       141 l~~~~-~~~~v~i~~~~~v~~Ll~d-~g~v~Gvv~~~~~~g~~~~~~A-kaVILATGG~g  197 (311)
T d1kf6a2         141 FQTSL-QFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAG  197 (311)
T ss_dssp             HHHHT-TCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEEC-SCEEECCCCCG
T ss_pred             HHHHH-ccCcceeEeeeEeeeeEec-CCcceeEEEEEcCCCcEEEEEC-CEEEEcCCCcc
Confidence            33344 6789999999999999998 689999988774 788888889 46999999774

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.23  E-value=1.3e-11  Score=130.47  Aligned_cols=55  Identities=22%  Similarity=0.253  Sum_probs=45.3

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGI  437 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGI  437 (1381)
                      ++.+.++..+++|+++..+ ++|++||+. + +|   +++|+ .||+|||+ .|++++..-|+
T Consensus       159 ~~~gv~i~~~~~V~~i~~~-~~~v~~V~T-~-~g---~i~a~-~VV~aaG~-~s~~l~~~~g~  213 (305)
T d1pj5a2         159 ESAGVTYRGSTTVTGIEQS-GGRVTGVQT-A-DG---VIPAD-IVVSCAGF-WGAKIGAMIGM  213 (305)
T ss_dssp             HHTTCEEECSCCEEEEEEE-TTEEEEEEE-T-TE---EEECS-EEEECCGG-GHHHHHHTTTC
T ss_pred             hcccccccCCceEEEEEEe-CCEEEEEec-c-ce---eEECC-EEEEecch-hHHHHHHHcCC
Confidence            4679999999999999998 678999974 2 34   47885 69999996 59999987764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.17  E-value=2.2e-11  Score=121.94  Aligned_cols=55  Identities=18%  Similarity=0.137  Sum_probs=42.9

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLL  433 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLm  433 (1381)
                      ++.+.+|.+|++|+||..+ +++++ |++.+ +|++.+++|+ .||+|+|+..+++||.
T Consensus       230 ~~~g~~i~~~~~V~~I~~~-~~~~~-v~~~~-~~~~~~~~ad-~VV~a~p~~~~~~Ll~  284 (347)
T d2ivda1         230 ASLGDAAHVGARVEGLARE-DGGWR-LIIEE-HGRRAELSVA-QVVLAAPAHATAKLLR  284 (347)
T ss_dssp             HHHGGGEESSEEEEEEECC---CCE-EEEEE-TTEEEEEECS-EEEECSCHHHHHHHHT
T ss_pred             HHhhcccccCCEEEEEEEe-CCeEE-EEEEc-CCeEEEEECC-EEEECCCHHHHHHhcc
Confidence            3446789999999999887 34443 55555 7888889995 7999999999999975

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.17  E-value=2.1e-10  Score=122.80  Aligned_cols=51  Identities=14%  Similarity=0.261  Sum_probs=44.8

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      +++|.++..+++|++++.+ +++++|+...+. +|+.++++| |.||+|+|.++
T Consensus       169 ~~~gv~i~~~~~~~~li~~-~~~v~g~~~~~~~~g~~~~i~A-k~VvlATGG~~  220 (336)
T d2bs2a2         169 LKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVA-KGTLIATGGYG  220 (336)
T ss_dssp             HHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEC-SEEEECCCCCG
T ss_pred             Hhccccccceeeeeecccc-cccccceeEEeccCCcEEEEec-CeEEEeccccc
Confidence            4679999999999999988 678999998874 788899999 68999999875

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.14  E-value=2e-12  Score=134.43  Aligned_cols=56  Identities=20%  Similarity=0.217  Sum_probs=43.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHHHHHHcCCCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQLLLLSGIGP  439 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPqLLmlSGIGP  439 (1381)
                      ++.+.++..+++|++|..+  ++.++|+..  +|   +++|+ .||+|||+ .|++++..-|+-+
T Consensus       162 ~~~Gv~i~~~~~V~~i~~~--~~~~~V~t~--~g---~i~a~-~vV~AaG~-~s~~l~~~~G~~~  217 (276)
T d1ryia1         162 KMLGAEIFEHTPVLHVERD--GEALFIKTP--SG---DVWAN-HVVVASGV-WSGMFFKQLGLNN  217 (276)
T ss_dssp             HHTTCEEETTCCCCEEECS--SSSEEEEET--TE---EEEEE-EEEECCGG-GTHHHHHHTTCCC
T ss_pred             HHcCCEEecceEEEeEEee--cceEEEecC--Ce---EEEcC-EEEECCCc-cHHHHHhhcCCCc
Confidence            4678999999999999865  446677652  33   57784 69999996 6899988888754

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.14  E-value=1.7e-10  Score=124.17  Aligned_cols=50  Identities=20%  Similarity=0.236  Sum_probs=39.4

Q ss_pred             CCCeEEEcCcEEEEEEec--CCCeEEEEEEEec-CCeEEEEecCcEEEEcCCch
Q psy11618        376 RTNLYVLKRSKVTKVIIN--DQNVATGVEYVNS-KGETVRVTANKEVILTAGAI  426 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd--~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI  426 (1381)
                      +.+.++..++.++++..+  +.++++|+...+. +|+.++++| |.||+|+|.+
T Consensus       164 ~~~~~i~~~~~~~~l~~~~~~~~~v~~~~~~~~~~G~~~~i~A-k~VILATGG~  216 (356)
T d1jnra2         164 VGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKA-KAVILATGGA  216 (356)
T ss_dssp             HCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEEC-SEEEECCCCB
T ss_pred             hcceEEEEEEEEEEeeeecccccceeeeEEEEeecCcEEEeeC-CEEEEcCCCc
Confidence            445677889999999875  4567888877664 788899999 5899999965

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.09  E-value=2.6e-11  Score=124.38  Aligned_cols=50  Identities=18%  Similarity=0.266  Sum_probs=40.7

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCCchhhHH
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAGAIANAQ  430 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAGAI~SPq  430 (1381)
                      ++.|+++..+++|++|..+ ++++.+|...  +|+  +++|+ .||+|+|+-.+|+
T Consensus       121 ~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~--~g~--~i~a~-~vI~AtGg~S~p~  170 (251)
T d2i0za1         121 KDLGVKIRTNTPVETIEYE-NGQTKAVILQ--TGE--VLETN-HVVIAVGGKSVPQ  170 (251)
T ss_dssp             HHTTCEEECSCCEEEEEEE-TTEEEEEEET--TCC--EEECS-CEEECCCCSSSGG
T ss_pred             HHcCCcccCCcEEEEEEEE-CCEEEEEEeC--CCC--eEecC-eEEEccCCccccc
Confidence            4679999999999999987 5778888754  465  46774 6999999988886

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=6e-10  Score=118.95  Aligned_cols=52  Identities=27%  Similarity=0.410  Sum_probs=42.7

Q ss_pred             CCCCeEEEcCcEEEEEEecCC------CeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQ------NVATGVEYVNS-KGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g------~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      ++.|.++..++.+++++.+++      +|++||...+. +|+.+.+.+ |.||+|+|..+
T Consensus       149 ~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~a-k~VilAtGG~~  207 (305)
T d1chua2         149 NHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHA-KAVVLATGGAS  207 (305)
T ss_dssp             HCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEEC-SEEEECCCCCG
T ss_pred             hccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEee-cceEEeeeccc
Confidence            578999999999999999732      38999998775 566666666 68999999874

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=1.5e-09  Score=117.66  Aligned_cols=52  Identities=15%  Similarity=0.271  Sum_probs=42.0

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEe-cCCeEEEEecCcEEEEcCCchh
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVN-SKGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd-~~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      .+.+.++..++.++++..+++++++|+...+ ++|+...++|+ .||+|+|..+
T Consensus       154 ~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~-~vIlAtGG~~  206 (330)
T d1neka2         154 LKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKAR-ATVLATGGAG  206 (330)
T ss_dssp             HHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEES-CEEECCCCCG
T ss_pred             HhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEecc-EEEEcCCCcc
Confidence            4678999999999999887566777776554 37888888885 6999999774

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.91  E-value=4.9e-10  Score=116.74  Aligned_cols=36  Identities=31%  Similarity=0.463  Sum_probs=33.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +.||+||||||+||+.+|.+++|+ |.+|+|+|+++.
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~-G~~V~vlEk~~~   38 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKK   38 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            569999999999999999999986 899999999964

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.50  E-value=4e-09  Score=107.92  Aligned_cols=36  Identities=31%  Similarity=0.364  Sum_probs=32.4

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +.-+++|||||+||+++|.+|+++ |++|.|+|+++.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~-G~~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            345899999999999999999986 999999999864

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=5.3e-08  Score=100.56  Aligned_cols=33  Identities=30%  Similarity=0.567  Sum_probs=30.7

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      |+||||||.||.++|.+|+++ |++|+|+||.+.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~-G~~V~VlE~~~~   33 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDR   33 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHT-TCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence            899999999999999999976 999999999754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.25  E-value=2.3e-07  Score=103.41  Aligned_cols=40  Identities=35%  Similarity=0.503  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhc-----cCCCeEEEEeccCCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSE-----VSSLKVLLIEAGGDT  198 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSE-----dpg~sVLVLEAG~d~  198 (1381)
                      ..++||+||||||+||+++|.+||+     ++|.+|+|||+|..+
T Consensus        29 ~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          29 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            3457999999999999999999996     469999999999643

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.09  E-value=2.4e-06  Score=90.33  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=30.3

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      .||+||||||+|||.+|...|+. |.||++||.-
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~-G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQK-GVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEEec
Confidence            69999999999999999999975 9999999854

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.98  E-value=2.3e-06  Score=85.12  Aligned_cols=36  Identities=36%  Similarity=0.547  Sum_probs=33.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ++||+||||||+||.++|.++++. |+||+++|++..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~-G~~V~viE~~~~   37 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYKG   37 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence            679999999999999999999986 999999998754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=3e-06  Score=90.78  Aligned_cols=35  Identities=43%  Similarity=0.620  Sum_probs=31.9

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .||+||||||.|||++|++|+|. |++|+|+|+.+.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~-g~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence            48999999999999999999986 899999999654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=3.4e-06  Score=84.70  Aligned_cols=35  Identities=31%  Similarity=0.426  Sum_probs=32.1

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++||+||||||+||..+|.++++. |.||+++|++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~-G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEeccC
Confidence            579999999999999999999976 89999999863

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=3.3e-06  Score=84.76  Aligned_cols=36  Identities=25%  Similarity=0.515  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +++||+||||||+||..+|.++++. |.||+++|+++
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~-G~kV~lie~~~   38 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRG   38 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecC
Confidence            4689999999999999999999975 99999999864

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.83  E-value=4.7e-06  Score=87.51  Aligned_cols=37  Identities=30%  Similarity=0.431  Sum_probs=34.2

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++|+||||||+||+.+|.+|+++.|.||.++|+++.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            5799999999999999999999877999999999864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.83  E-value=4.6e-06  Score=83.37  Aligned_cols=35  Identities=31%  Similarity=0.520  Sum_probs=32.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++||+||||||+||+.+|.++++. |.||+++|+++
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~-G~kV~vie~~~   36 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRG   36 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecC
Confidence            579999999999999999999975 89999999864

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.81  E-value=2.9e-05  Score=83.19  Aligned_cols=34  Identities=35%  Similarity=0.427  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      -++|||||+||.++|..|+++ .+.+|.++|++++
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            489999999999999999875 3479999999964

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.79  E-value=5.8e-06  Score=78.84  Aligned_cols=34  Identities=38%  Similarity=0.558  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHHHhccCC-CeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg-~sVLVLEAG~d  197 (1381)
                      .|++|||||+||+++|.+|+++ | ++|.|+|+.+.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~-G~~~V~vlE~~~~   35 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEA-GITDLLILEATDH   35 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhC-CCCcEEEEECCCC
Confidence            4899999999999999999986 7 57999999864

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=7.1e-06  Score=81.32  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++.++||||||.||.++|.+|+++ |++|.|+||.+.
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~-G~~V~VlEa~~r   39 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDR   39 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            3567899999999999999999986 899999999864

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.76  E-value=8.8e-06  Score=82.39  Aligned_cols=36  Identities=28%  Similarity=0.469  Sum_probs=33.0

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      +||+||||||+||.++|.++|+. |+||+++|+++..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~-G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKF-DKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGG-CCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCC
Confidence            69999999999999999999976 9999999998753

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.73  E-value=7e-06  Score=83.48  Aligned_cols=36  Identities=22%  Similarity=0.398  Sum_probs=32.8

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +.+||+|||||||||..+|.++++. |+||+++|+++
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~-G~~V~viE~~~   39 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYK   39 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeccC
Confidence            4579999999999999999999975 99999999875

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=9.6e-06  Score=81.18  Aligned_cols=35  Identities=20%  Similarity=0.484  Sum_probs=31.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .+||+||||||+||..+|.++++. |+||+++|++.
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~-G~kV~vIEk~~   36 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHK   36 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHC-CCEEEEEeccC
Confidence            379999999999999999999975 89999999864

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.65  E-value=1.3e-05  Score=79.86  Aligned_cols=34  Identities=32%  Similarity=0.517  Sum_probs=31.4

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +||+||||||+||..+|.++++. |+||+++|+|.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~-G~kV~vIEk~~   36 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKGN   36 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCEEEEEecCC
Confidence            69999999999999999999975 99999999874

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.57  E-value=2.1e-05  Score=78.74  Aligned_cols=36  Identities=22%  Similarity=0.390  Sum_probs=32.0

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +.||+|||||||||..+|.++|+..+++|+++|++.
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            679999999999999999999986567899999753

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.56  E-value=1.9e-05  Score=82.84  Aligned_cols=39  Identities=38%  Similarity=0.520  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCchHHHHHHHHhc----cCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSE----VSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSE----dpg~sVLVLEAG~d~  198 (1381)
                      ++.||++|||||+||+++|.-|++    ..|++|.|+|+-+.+
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            456999999999999999999984    469999999997643

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.53  E-value=2.6e-05  Score=76.73  Aligned_cols=33  Identities=30%  Similarity=0.489  Sum_probs=30.2

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+||||||+||+++|.+|+++ |++|.|+|+++.
T Consensus         3 kV~IIGaG~aGL~aA~~La~~-G~~V~vlE~~~~   35 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGK   35 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            389999999999999999975 999999999764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.49  E-value=2.8e-05  Score=80.78  Aligned_cols=33  Identities=30%  Similarity=0.576  Sum_probs=30.8

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ||+||||||+||..+|.++|+. |.||+++|++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~-G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARH-NAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence            9999999999999999999976 99999999763

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.47  E-value=2.8e-05  Score=78.35  Aligned_cols=36  Identities=22%  Similarity=0.389  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ..+||.||||||+||..+|.++++. |.+|+++|+|.
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~-G~~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence            4579999999999999999999986 99999999863

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=3.5e-05  Score=74.88  Aligned_cols=32  Identities=25%  Similarity=0.450  Sum_probs=29.7

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEec
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEA  194 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEA  194 (1381)
                      .||+||||||+||..+|.++++. |.||+++|+
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~-G~~v~iie~   32 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARK-GIRTGLMGE   32 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTT-TCCEEEECS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc-CCeEEEEEE
Confidence            49999999999999999999975 999999995

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.39  E-value=7e-05  Score=74.50  Aligned_cols=35  Identities=14%  Similarity=0.178  Sum_probs=31.7

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .+-|+||||||.+|+.+|.+|+|+ |.+|.|+|+++
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~-G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARK-GYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            445899999999999999999986 89999999975

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.35  E-value=6.5e-05  Score=78.08  Aligned_cols=39  Identities=21%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             cCCCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        157 VKSGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       157 ~~~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ....++||+||||||+||..+|.++++. |.+|.++|+++
T Consensus        37 ~~~~k~yDvvVIGgG~aG~~aA~~~a~~-G~kv~vve~~~   75 (261)
T d1mo9a1          37 ENDPREYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWP   75 (261)
T ss_dssp             TTCCSCBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccC
Confidence            4455789999999999999999999976 88999999875

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.34  E-value=4.5e-05  Score=77.58  Aligned_cols=37  Identities=16%  Similarity=0.384  Sum_probs=32.3

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +++||+||||||+||..+|.+.|+...++|.++|...
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            3679999999999999999999986457899999865

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.27  E-value=9.4e-05  Score=74.56  Aligned_cols=34  Identities=35%  Similarity=0.481  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHHHhccCC-CeEEEEeccCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSS-LKVLLIEAGGD  197 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg-~sVLVLEAG~d  197 (1381)
                      .|++|||||+||+++|..|++. | .+|.|+|+.++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~-Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCeEEEEeCCCC
Confidence            6999999999999999999986 7 59999999753

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.14  E-value=0.00013  Score=78.40  Aligned_cols=37  Identities=35%  Similarity=0.534  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+++|+||||||++|.++|.+|.++ |.+|.++|++++
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~-G~~v~i~Ek~~~   41 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGD   41 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhC-CCCEEEEEcCCC
Confidence            3579999999999999999999975 899999999964

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.11  E-value=0.00012  Score=75.77  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=31.3

Q ss_pred             cccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +.|++|||||++|+++|.+|++. |++|.|+|+.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~-G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            46999999999999999999976 99999999875

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.00015  Score=77.07  Aligned_cols=38  Identities=34%  Similarity=0.401  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      ..++|++|||||+||+.+|.+++++ +|.+|.++|+++.
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            3578999999999999999999974 7999999999753

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.03  E-value=0.00018  Score=77.51  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=30.8

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .++|||||.||+++|.+|+++ |++|+|+|+.+..
T Consensus         4 KI~IIGaG~sGL~aA~~L~k~-G~~V~viEk~~~i   37 (314)
T d2bi7a1           4 KILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHI   37 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhC-CCCEEEEECCCCC
Confidence            579999999999999999986 8999999998653

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.86  E-value=0.00037  Score=70.24  Aligned_cols=32  Identities=28%  Similarity=0.337  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      .++|||||+||+++|..|+++ |++|.|+|+.+
T Consensus         6 kV~IiGaG~aGl~~A~~L~~~-G~~v~v~Er~~   37 (265)
T d2voua1           6 RIAVVGGSISGLTAALMLRDA-GVDVDVYERSP   37 (265)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            589999999999999999986 99999999865

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00027  Score=69.65  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=31.4

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +..|++|||||+||+.+|..+++. +.+|+++|++.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~-g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT-TCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEEeec
Confidence            468999999999999999999975 89999999764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.78  E-value=0.00028  Score=70.01  Aligned_cols=36  Identities=28%  Similarity=0.216  Sum_probs=31.9

Q ss_pred             CcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +++|++|||||+||+.+|..+++. |.+|.++|++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~-g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARA-ELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHHc-CCcEEEEEeecc
Confidence            469999999999999999999965 899999997753

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0013  Score=66.34  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .+..++.|||||+||..+|..++++ |++|.+.|+.+..
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~-G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhh-ccceEEEeccCcc
Confidence            3456899999999999999999976 9999999998653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.50  E-value=0.0011  Score=67.50  Aligned_cols=37  Identities=27%  Similarity=0.333  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        160 GDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       160 ~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .+.-|++|||||+||..+|.++++. |.+|.++|+.++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~-G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHh-ccceeeEeeccc
Confidence            4557999999999999999999975 999999999874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.46  E-value=0.00053  Score=64.68  Aligned_cols=34  Identities=29%  Similarity=0.529  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d  197 (1381)
                      -+||||||.+|..+|.+|.+. ++.+|.++|+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            479999999999999999875 5679999998764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.13  E-value=0.0018  Score=62.81  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=29.3

Q ss_pred             EEEECCCchHHHHHHHHhccCCC-eEEEEeccCCC
Q psy11618        165 IIIVGASAAGCVLANRLSEVSSL-KVLLIEAGGDT  198 (1381)
Q Consensus       165 YIIVGGGTAG~VLAsRLSEdpg~-sVLVLEAG~d~  198 (1381)
                      ++|||||+||..+|..|++. |. .|.|+|+++..
T Consensus         7 VaIIGaGpaGl~aA~~l~~~-G~~~V~v~E~~~~~   40 (196)
T d1gtea4           7 IALLGAGPASISCASFLARL-GYSDITIFEKQEYV   40 (196)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSC
T ss_pred             EEEECChHHHHHHHHHHHHC-CCCeEEEEEecCcc
Confidence            69999999999999999986 76 49999999754

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.13  E-value=0.0017  Score=65.25  Aligned_cols=35  Identities=29%  Similarity=0.261  Sum_probs=30.5

Q ss_pred             cEEEECCCchHHHHHHHHhcc-CCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEV-SSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEd-pg~sVLVLEAG~d~  198 (1381)
                      -++|||||+||..+|.+|+++ .+++|.|+|+++..
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            579999999999999999754 57899999999643

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.51  E-value=0.0034  Score=62.35  Aligned_cols=37  Identities=22%  Similarity=0.234  Sum_probs=31.2

Q ss_pred             cccEEEECCCchHHHHHHHHhcc------CCCeEEEEeccCCC
Q psy11618        162 CFDIIIVGASAAGCVLANRLSEV------SSLKVLLIEAGGDT  198 (1381)
Q Consensus       162 ~YDYIIVGGGTAG~VLAsRLSEd------pg~sVLVLEAG~d~  198 (1381)
                      .+.+.|||||+||..+|.+|++.      .+.+|.|.|+.+..
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            36899999999999999999875      23689999998753

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.20  E-value=0.0053  Score=62.34  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=27.5

Q ss_pred             cEEEECCCchHHHHHHHHhcc--CCCeEEEEeccC
Q psy11618        164 DIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGG  196 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEd--pg~sVLVLEAG~  196 (1381)
                      ++|||||||||..+|.+.|+.  .+++|.++|++.
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            689999999999988877753  357899999863

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0078  Score=60.79  Aligned_cols=37  Identities=14%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             CcccEEEECCCchHHHHHHHHhc-cCCCeEEEEeccCC
Q psy11618        161 DCFDIIIVGASAAGCVLANRLSE-VSSLKVLLIEAGGD  197 (1381)
Q Consensus       161 ~~YDYIIVGGGTAG~VLAsRLSE-dpg~sVLVLEAG~d  197 (1381)
                      +++||||||||.||+-+|.+|.+ +++.+|.++++.+.
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            56899999999999999999975 46678999987543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.76  E-value=0.014  Score=55.73  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      |++|||||.+|+-+|..+++. +.+|.++|+++.+
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~-g~~v~v~~~~~~~   38 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRAS-GWEGNIRLVGDAT   38 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCC
T ss_pred             CEEEECCcHHHHHHHHHHHHc-CCceEEEEecCcc
Confidence            799999999999999999975 6777778877654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.52  E-value=0.015  Score=53.56  Aligned_cols=33  Identities=21%  Similarity=0.517  Sum_probs=30.7

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ..+|||||..|+-.|..+++. |.+|.++|+++.
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~-G~~Vtlve~~~~   56 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANF-GTKVTILEGAGE   56 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             eEEEECCCccceeeeeeeccc-ccEEEEEEecce
Confidence            689999999999999999975 999999999975

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.41  E-value=0.0027  Score=62.68  Aligned_cols=31  Identities=23%  Similarity=0.188  Sum_probs=26.9

Q ss_pred             EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++|||||.+|+++|.+|+|+ |.+|.++|+..
T Consensus         3 V~VIGaGi~GlstA~~L~~~-G~~v~v~e~~~   33 (246)
T d1kifa1           3 VVVIGAGVIGLSTALCIHER-YHSVLQPLDVK   33 (246)
T ss_dssp             EEEECCSHHHHHHHHHHHHH-HTTTSSSCEEE
T ss_pred             EEEECchHHHHHHHHHHHHC-CCCceEEeeee
Confidence            79999999999999999986 77777777753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.24  E-value=0.015  Score=54.22  Aligned_cols=34  Identities=35%  Similarity=0.476  Sum_probs=31.0

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      +++|||||..|+-+|..+++. |++|.++|+++..
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~l   67 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEA-GYHVKLIHRGAMF   67 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHT-TCEEEEECSSSCC
T ss_pred             cEEEECCcHHHHHHHHHhhcc-cceEEEEeccccc
Confidence            689999999999999999975 9999999999753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.12  E-value=0.02  Score=53.68  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=31.6

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      -.++|||||..|+-+|..+++. |++|.++|+++..
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~~   65 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTA-GVHVSLVETQPRL   65 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             CeEEEECcchhHHHHHHHhhcc-cceEEEEeecccc
Confidence            3689999999999999999975 9999999999753

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.87  E-value=0.02  Score=52.59  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=31.1

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ..+|||||..|+-+|.-+++. |++|.++|+++..
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~-g~~Vtlve~~~~i   56 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKL-GAQVSVVEARERI   56 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhc-ccceEEEeeeccc
Confidence            589999999999999999976 8999999999753

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.36  E-value=0.032  Score=52.05  Aligned_cols=34  Identities=18%  Similarity=0.354  Sum_probs=31.1

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .++|||||..|+-+|..+++. |++|.++|+.+..
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~-g~~Vtlie~~~~~   65 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILDRP   65 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             EEEEECChHHHHHHHHHhhcc-ceEEEEEEecCcc
Confidence            689999999999999999975 9999999999753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.22  E-value=0.032  Score=52.78  Aligned_cols=35  Identities=14%  Similarity=0.340  Sum_probs=31.5

Q ss_pred             ccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        163 FDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       163 YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      -.++|||||.+|+-+|+.+++. |.+|.++|+++..
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~-g~~Vtvie~~~~~   70 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKA-NMHVTLLDTAARV   70 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSST
T ss_pred             CEEEEECCchHHHHHHHHHHhh-Ccceeeeeecccc
Confidence            3689999999999999999975 9999999999753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.15  E-value=0.035  Score=51.22  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      -++|||||..|+-+|..+++. |.+|.++|+++..
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~-G~~Vtlve~~~~~   56 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGL-GAKTHLFEMFDAP   56 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             EEEEECCChhhHHHHHHhhcc-ccEEEEEeecchh
Confidence            379999999999999999975 8999999999753

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.63  E-value=0.041  Score=53.87  Aligned_cols=47  Identities=17%  Similarity=0.319  Sum_probs=35.4

Q ss_pred             CCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCCchh
Q psy11618        376 RTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAGAIA  427 (1381)
Q Consensus       376 R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAGAI~  427 (1381)
                      +.|+++.++++|++|..+ ++   +|.+.+. +|+++++.++ .+|+|+|+..
T Consensus        68 ~~gi~v~~~~~V~~i~~~-~~---~v~~~~~~~g~~~~~~~D-~li~a~G~~~  115 (198)
T d1nhpa1          68 SRGVNVFSNTEITAIQPK-EH---QVTVKDLVSGEERVENYD-KLIISPGAVP  115 (198)
T ss_dssp             HTTCEEEETEEEEEEETT-TT---EEEEEETTTCCEEEEECS-EEEECCCEEE
T ss_pred             HCCcEEEEeeceeeEeec-cc---cceeeecccccccccccc-eeeEeeccee
Confidence            458899999999999765 33   3555543 6888888885 7999999764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.50  E-value=0.05  Score=50.51  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=30.6

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      -++|||||..|+-+|.-+++. |.+|.++|+++..
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~i   57 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRL-GIDSYIFARGNRI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEECSSSSS
T ss_pred             EEEEECCchHHHHHHHHHHhc-cccceeeehhccc
Confidence            479999999999999999964 9999999999753

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.19  E-value=0.038  Score=53.39  Aligned_cols=33  Identities=18%  Similarity=0.411  Sum_probs=27.5

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .++|||||.+|+-+|.+|.+. +.+|-++|.++.
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~-g~~v~i~~~~~~   37 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQA-GYQGLITVVGDE   37 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH-TCCSCEEEEESS
T ss_pred             CEEEECccHHHHHHHHHHHhc-CCceEEEEEecc
Confidence            489999999999999999976 666777777654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.49  E-value=0.072  Score=50.20  Aligned_cols=30  Identities=33%  Similarity=0.579  Sum_probs=26.4

Q ss_pred             EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++|||||.+|+-+|..+++  +.+|.++|+.+
T Consensus         3 VvIIGgG~~G~e~A~~l~~--~~~Vtvv~~~~   32 (167)
T d1xhca1           3 VVIVGNGPGGFELAKQLSQ--TYEVTVIDKEP   32 (167)
T ss_dssp             EEEECCSHHHHHHHHHHTT--TSEEEEECSSS
T ss_pred             EEEECCcHHHHHHHHHHHc--CCCEEEEeccc
Confidence            6899999999999999985  57899998764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.17  E-value=0.061  Score=49.80  Aligned_cols=33  Identities=15%  Similarity=0.374  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      .|||+|+|..|..+|.+|++. |++|.++|.-++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~-g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM-GHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEecCcHH
Confidence            489999999999999999976 999999998653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.12  E-value=0.084  Score=49.14  Aligned_cols=34  Identities=26%  Similarity=0.260  Sum_probs=30.9

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .++|||||..|+-.|..+++. |.+|.++|+++..
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~~   57 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSAL-GSKTSLMIRHDKV   57 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             EEEEEcCCccHHHHHHHHhcC-CcEEEEEeecccc
Confidence            579999999999999999975 9999999999753

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=91.03  E-value=0.18  Score=45.94  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=39.7

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcCC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTAG  424 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSAG  424 (1381)
                      ++.++++.+|++|++|.-+++++.+++.... .+...+++|. .||+|.|
T Consensus        74 ~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~-~~~~~~i~~D-~Vi~a~G  121 (121)
T d1mo9a2          74 KEQGMEIISGSNVTRIEEDANGRVQAVVAMT-PNGEMRIETD-FVFLGLG  121 (121)
T ss_dssp             HHTTCEEESSCEEEEEEECTTSBEEEEEEEE-TTEEEEEECS-CEEECCC
T ss_pred             hccccEEEcCCEEEEEEecCCceEEEEEEEe-CCCCEEEEcC-EEEEEEC
Confidence            4679999999999999987667787887766 5666788885 7999988

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.95  E-value=0.11  Score=47.90  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=31.0

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ..+|||||..||-.|+-+++. |.+|.++|+++..
T Consensus        24 ~i~IiG~G~ig~E~A~~l~~~-G~~Vtiv~~~~~l   57 (119)
T d3lada2          24 KLGVIGAGVIGLELGSVWARL-GAEVTVLEAMDKF   57 (119)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             eEEEECCChHHHHHHHHHHHc-CCceEEEEeeccc
Confidence            579999999999999999975 9999999999753

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.68  E-value=0.098  Score=48.64  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=30.9

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      -.+|||||..|+-.|.-+++. |.+|.++|++++.
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~l-G~~Vtii~~~~~~   58 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQPQI   58 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             eEEEECCCchHHHHHHHHHhh-CcceeEEEecccc
Confidence            479999999999999999975 9999999999754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=90.33  E-value=0.084  Score=50.54  Aligned_cols=31  Identities=19%  Similarity=0.254  Sum_probs=28.6

Q ss_pred             EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      +.|||+|..|+.+|..|+++ |++|.+.++.+
T Consensus         4 iaIiGaG~~G~~~A~~l~~~-G~~V~~~~r~~   34 (184)
T d1bg6a2           4 YAVLGLGNGGHAFAAYLALK-GQSVLAWDIDA   34 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEECccHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            68999999999999999986 89999999865

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=90.15  E-value=0.15  Score=46.50  Aligned_cols=34  Identities=9%  Similarity=0.209  Sum_probs=30.8

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      .++|||||..|+=.|..+++. +.+|.++|+++..
T Consensus        24 ~vvVvGgG~ig~E~A~~l~~~-g~~vt~i~~~~~~   57 (121)
T d1mo9a2          24 TVVVVGGSKTAVEYGCFFNAT-GRRTVMLVRTEPL   57 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCTT
T ss_pred             EEEEECCCHHHHHHHHHHHhc-chhheEeeccchh
Confidence            679999999999999999975 8999999999753

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.06  E-value=0.43  Score=44.63  Aligned_cols=54  Identities=15%  Similarity=0.297  Sum_probs=43.8

Q ss_pred             cchhhhcCCCCeEEEcCcEEEEEEecCCCeEEEEEEEec-CCeEEEEecCcEEEEcCC
Q psy11618        368 YLTPIAGKRTNLYVLKRSKVTKVIINDQNVATGVEYVNS-KGETVRVTANKEVILTAG  424 (1381)
Q Consensus       368 YL~Pa~~~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~-~Gr~~tV~ArKEVILSAG  424 (1381)
                      +.+.+. +.+|.++.+|++|++|.=+ +++++||++.+. +|+++++.+. .|.++-|
T Consensus        71 ~~~~~~-~~~~I~v~~~~~v~~i~G~-~~~v~~v~l~~~~tge~~~l~vd-gvFv~IG  125 (126)
T d1fl2a2          71 LQDKLR-SLKNVDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHNIELA-GIFVQIG  125 (126)
T ss_dssp             HHHHHH-TCTTEEEESSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECS-EEEECSC
T ss_pred             cccccc-cccceeEEcCcceEEEEcc-ccceeeEEEEECCCCCEEEEECC-EEEEEeC
Confidence            444455 6789999999999999876 567999999985 6888888885 6888766

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.02  E-value=0.12  Score=48.66  Aligned_cols=32  Identities=13%  Similarity=0.200  Sum_probs=29.1

Q ss_pred             EEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      ++|||+|-.|..+|.+|+++ |++|.|+|+-.+
T Consensus         5 IliiGaG~~G~~~a~~L~~~-g~~V~v~dr~~~   36 (182)
T d1e5qa1           5 VLMLGSGFVTRPTLDVLTDS-GIKVTVACRTLE   36 (182)
T ss_dssp             EEEECCSTTHHHHHHHHHTT-TCEEEEEESCHH
T ss_pred             EEEECCCHHHHHHHHHHHhC-CCEEEEEECChH
Confidence            68999999999999999986 889999998764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.84  E-value=0.12  Score=47.36  Aligned_cols=35  Identities=17%  Similarity=0.165  Sum_probs=28.3

Q ss_pred             cEEEECCCchHHHHHHHHhcc--CCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEV--SSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEd--pg~sVLVLEAG~d~  198 (1381)
                      ..+|||||..||-.|.-+++-  .+.+|.++|+++..
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            589999999999999665532  36789999999753

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.41  E-value=0.14  Score=58.76  Aligned_cols=39  Identities=21%  Similarity=0.349  Sum_probs=35.2

Q ss_pred             CCCcccEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        159 SGDCFDIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       159 ~~~~YDYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ..++||+||+|.|-.=|++|+-||.+ |+|||-+|+-+..
T Consensus         3 lP~e~DVII~GTGL~ESILAaAlSr~-GkkVLHiD~N~yY   41 (491)
T d1vg0a1           3 LPSDFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYY   41 (491)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCccCEEEECCChHHHHHHHHHHhc-CCEEEEecCCCcC
Confidence            34689999999999999999999975 9999999998764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=89.22  E-value=0.15  Score=47.86  Aligned_cols=32  Identities=19%  Similarity=0.134  Sum_probs=28.7

Q ss_pred             EEEECCCchHHHHHHHHhccCCCeEEEEeccCC
Q psy11618        165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGGD  197 (1381)
Q Consensus       165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d  197 (1381)
                      +.|+|+|.-|+..|.+|++. |++|.++.+++.
T Consensus         3 I~IiGaG~iG~~~a~~L~~~-G~~V~~~~r~~~   34 (167)
T d1ks9a2           3 ITVLGCGALGQLWLTALCKQ-GHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-TCEEEEECSSCC
T ss_pred             EEEECcCHHHHHHHHHHHHC-CCceEEEEcCHH
Confidence            57999999999999999985 999999988753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.84  E-value=0.16  Score=47.26  Aligned_cols=31  Identities=39%  Similarity=0.558  Sum_probs=28.0

Q ss_pred             EEEECCCchHHHHHHHHhccCCCeEEEEeccC
Q psy11618        165 IIIVGASAAGCVLANRLSEVSSLKVLLIEAGG  196 (1381)
Q Consensus       165 YIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~  196 (1381)
                      ++|+|+|.-|..+|.+|++. |++|.++|.-+
T Consensus         3 IvI~G~G~~G~~la~~L~~~-g~~v~vid~d~   33 (132)
T d1lssa_           3 IIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDK   33 (132)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHHC-CCCcceecCCh
Confidence            58999999999999999975 89999999854

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.17  E-value=0.17  Score=47.40  Aligned_cols=34  Identities=15%  Similarity=0.296  Sum_probs=31.0

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ..+|||||..|+=+|.-+++. |.+|.++|++++-
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~-G~~Vtive~~~~i   61 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTL-GSRLDVVEMMDGL   61 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHhhcC-CCEEEEEEeeccc
Confidence            579999999999999999976 9999999999753

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=87.69  E-value=0.22  Score=45.42  Aligned_cols=35  Identities=17%  Similarity=0.107  Sum_probs=28.6

Q ss_pred             cEEEECCCchHHHHHHHHhc--cCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSE--VSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSE--dpg~sVLVLEAG~d~  198 (1381)
                      .++|||||..|+=.|.-+++  +.+.+|-++|+++..
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            58999999999999976554  237899999999753

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.64  E-value=0.16  Score=47.78  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=30.2

Q ss_pred             cEEEECCCchHHHHHHHHhc---cCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSE---VSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSE---dpg~sVLVLEAG~d~  198 (1381)
                      ..+|||||.+|+-+|..+++   +.|.+|.++|+++..
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            68999999999999999974   357899999998753

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.03  E-value=0.47  Score=43.60  Aligned_cols=89  Identities=15%  Similarity=0.154  Sum_probs=52.5

Q ss_pred             chHHHHHHHHHHHcCCCCCCCCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCeE
Q psy11618        319 NIIREIFETSAQELGYPCPKDMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNVA  398 (1381)
Q Consensus       319 ~pl~~~f~eA~eeLG~p~~~D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~RA  398 (1381)
                      ....-.++++++++|.+..-= ...+ +..    +. .+.     ....++.... ++.|.++.+|++|+++.-+ +++ 
T Consensus        31 G~ig~E~A~~l~~~G~~Vtiv-~~~~-~ll----~~-~d~-----ei~~~l~~~l-~~~Gv~i~~~~~v~~i~~~-~~~-   95 (119)
T d3lada2          31 GVIGLELGSVWARLGAEVTVL-EAMD-KFL----PA-VDE-----QVAKEAQKIL-TKQGLKILLGARVTGTEVK-NKQ-   95 (119)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEE-ESSS-SSS----TT-SCH-----HHHHHHHHHH-HHTTEEEEETCEEEEEEEC-SSC-
T ss_pred             ChHHHHHHHHHHHcCCceEEE-Eeec-ccC----Cc-ccc-----hhHHHHHHHH-HhcCceeecCcEEEEEEEe-CCE-
Confidence            456677888888998754210 0001 000    00 000     1112333333 4679999999999999886 333 


Q ss_pred             EEEEEEecCCeEEEEecCcEEEEcCC
Q psy11618        399 TGVEYVNSKGETVRVTANKEVILTAG  424 (1381)
Q Consensus       399 tGVE~vd~~Gr~~tV~ArKEVILSAG  424 (1381)
                      ..|++.+ +++++++.+. .|++|+|
T Consensus        96 v~v~~~~-~~~~~~~~~D-~vlvAvG  119 (119)
T d3lada2          96 VTVKFVD-AEGEKSQAFD-KLIVAVG  119 (119)
T ss_dssp             EEEEEES-SSEEEEEEES-EEEECSC
T ss_pred             EEEEEEE-CCCCEEEECC-EEEEeeC
Confidence            3466666 5555678885 6999988

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=85.87  E-value=0.28  Score=45.40  Aligned_cols=34  Identities=15%  Similarity=0.378  Sum_probs=31.0

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEeccCCC
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAGGDT  198 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG~d~  198 (1381)
                      ..+|||||..|+-.|.-+++. |.+|.++|++++.
T Consensus        27 ~~viiG~G~iglE~A~~~~~~-G~~Vtvi~~~~~~   60 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRI-GSEVTVVEFASEI   60 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhc-CCeEEEEEEcccc
Confidence            578999999999999999975 9999999999864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=85.57  E-value=0.25  Score=45.80  Aligned_cols=47  Identities=23%  Similarity=0.281  Sum_probs=34.1

Q ss_pred             CCCCeEEEcCcEEEEEEecCCCeEEEEEEEecCCeEEEEecCcEEEEcC
Q psy11618        375 KRTNLYVLKRSKVTKVIINDQNVATGVEYVNSKGETVRVTANKEVILTA  423 (1381)
Q Consensus       375 ~R~NLtILTnA~VtRIlfd~g~RAtGVE~vd~~Gr~~tV~ArKEVILSA  423 (1381)
                      ++.++++.+|++|++|.-++++..+.++..+ +|+++++++. .|++||
T Consensus        77 ~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~-~g~~~~i~~D-~vLvAA  123 (123)
T d1dxla2          77 EKQGMKFKLKTKVVGVDTSGDGVKLTVEPSA-GGEQTIIEAD-VVLVSA  123 (123)
T ss_dssp             HHSSCCEECSEEEEEEECSSSSEEEEEEESS-SCCCEEEEES-EEECCC
T ss_pred             hcccceEEcCCceEEEEEccCeEEEEEEECC-CCeEEEEEcC-EEEEcC
Confidence            4668999999999999876444333443333 6777788885 788887

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.91  E-value=0.35  Score=44.78  Aligned_cols=31  Identities=26%  Similarity=0.325  Sum_probs=28.0

Q ss_pred             cEEEECCCchHHHHHHHHhccCCCeEEEEecc
Q psy11618        164 DIIIVGASAAGCVLANRLSEVSSLKVLLIEAG  195 (1381)
Q Consensus       164 DYIIVGGGTAG~VLAsRLSEdpg~sVLVLEAG  195 (1381)
                      ..+|||||..|+-.|+-+++- |.+|.++|+.
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~l-G~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhhc-CCeEEEEEec
Confidence            479999999999999999975 8999999964

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.44  E-value=1.3  Score=40.84  Aligned_cols=89  Identities=12%  Similarity=0.096  Sum_probs=53.8

Q ss_pred             chHHHHHHHHHHHcCCCCCC-CCCCCCCCcccccCCCCCCCCcccchhhhcchhhhcCCCCeEEEcCcEEEEEEecCCCe
Q psy11618        319 NIIREIFETSAQELGYPCPK-DMNDRYVDVGFAELPGMTRYGLRFSAADAYLTPIAGKRTNLYVLKRSKVTKVIINDQNV  397 (1381)
Q Consensus       319 ~pl~~~f~eA~eeLG~p~~~-D~N~g~~~~G~s~~~~ti~~G~RsSAa~AYL~Pa~~~R~NLtILTnA~VtRIlfd~g~R  397 (1381)
                      .+..-.+++++.++|.+..- +.+++-       .+. .+  .   ....++.... ++.++++.+|++|+++.-++++.
T Consensus        32 G~ig~E~A~~l~~lG~~Vtii~~~~~~-------l~~-~d--~---ei~~~l~~~l-~~~GV~i~~~~~v~~v~~~~~~~   97 (122)
T d1v59a2          32 GIIGLEMGSVYSRLGSKVTVVEFQPQI-------GAS-MD--G---EVAKATQKFL-KKQGLDFKLSTKVISAKRNDDKN   97 (122)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSSSSS-------SSS-SC--H---HHHHHHHHHH-HHTTCEEECSEEEEEEEEETTTT
T ss_pred             CchHHHHHHHHHhhCcceeEEEecccc-------chh-hh--h---hhHHHHHHHH-HhccceEEeCCEEEEEEEeCCCc
Confidence            45666788888899875421 211111       000 11  1   1112333333 45689999999999998875566


Q ss_pred             EEEEEEEec-CCeEEEEecCcEEEEc
Q psy11618        398 ATGVEYVNS-KGETVRVTANKEVILT  422 (1381)
Q Consensus       398 AtGVE~vd~-~Gr~~tV~ArKEVILS  422 (1381)
                      .+.|.+.+. +|+.+++++. .|++|
T Consensus        98 ~v~~~~~~~~~~~~~~ie~D-~vlvA  122 (122)
T d1v59a2          98 VVEIVVEDTKTNKQENLEAE-VLLVA  122 (122)
T ss_dssp             EEEEEEEETTTTEEEEEEES-EEEEC
T ss_pred             EEEEEEEeCCCCCeEEEEeC-EEEEC
Confidence            666666654 5677889985 56664