Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 74
cd01926 164
cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik
4e-34 PLN03149 186
PLN03149, PLN03149, peptidyl-prolyl isomerase H (c
5e-32 PTZ00060 183
PTZ00060, PTZ00060, cyclophilin; Provisional
1e-20 cd00317 146
cd00317, cyclophilin, cyclophilin: cyclophilin-typ
8e-20 pfam00160 144
pfam00160, Pro_isomerase, Cyclophilin type peptidy
2e-18 COG0652 158
COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase
2e-17 cd01928 153
cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3
3e-10 cd01920 155
cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP
2e-09 cd01923 159
cd01923, cyclophilin_RING, cyclophilin_RING: cyclo
3e-09 cd01922 146
cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY
3e-09 cd01927 148
cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo
2e-08 PRK10791 164
PRK10791, PRK10791, peptidyl-prolyl cis-trans isom
5e-08 cd01925 171
cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC
9e-08 PTZ00221 249
PTZ00221, PTZ00221, cyclophilin; Provisional
2e-07 PRK10903 190
PRK10903, PRK10903, peptidyl-prolyl cis-trans isom
1e-04 cd01921 166
cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph
2e-04
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain
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Score = 113 bits (285), Expect = 4e-34
Identities = 38/60 (63%), Positives = 46/60 (76%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
+ GR++ ELFADVVPKT+ENFR CTGE + P G+KG++FHRVI DFMIQGGDF
Sbjct: 12 EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTR 71
This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional
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Score = 108 bits (272), Expect = 5e-32
Identities = 41/57 (71%), Positives = 48/57 (84%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
GR+ ELFAD+ PKT+ENFRQFCTGEFR+ +P G+KG FHRVIKDFMIQGGDF+
Sbjct: 33 GRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLK 89
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional
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Score = 79.9 bits (197), Expect = 1e-20
Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
GR++FELF+DV PKT+ENFR C G+ + +KG+ FHR+I FM QGGD N
Sbjct: 30 GRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITN 87
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases
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Score = 76.5 bits (189), Expect = 8e-20
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 12 IGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
GR++ EL+ D PKT ENF G F + G +FHRVI FMIQGGD
Sbjct: 6 KGRIVIELYGDEAPKTVENFLSLARGGF--------YDGTTFHRVIPGFMIQGGDPTG 55
This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
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Score = 72.7 bits (179), Expect = 2e-18
Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFV 68
T +GR++ ELF D PKT ENF C F + G FHRVI FMIQGGD
Sbjct: 5 TTNLGRIVIELFGDEAPKTVENFLSLCKKGF--------YDGTIFHRVIPGFMIQGGDPT 56
Query: 69 N 69
Sbjct: 57 G 57
The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
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Score = 70.7 bits (174), Expect = 2e-17
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
G + EL+ D PKT NF Q F + G FHRVI FMIQGGD
Sbjct: 5 ETNKGDITIELYPDKAPKTVANFLQLVKEGF--------YDGTIFHRVIPGFMIQGGDP 55
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like
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Score = 52.1 bits (125), Expect = 3e-10
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 66
G + ELF D PK ENF C + + G FHR IK FM+Q GD
Sbjct: 10 GDIKIELFCDDCPKACENFLALCASGY--------YNGCIFHRNIKGFMVQTGD 55
Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E
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Score = 49.7 bits (119), Expect = 2e-09
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
G ++ EL+ D P T ENF + F + + FHRVI F+IQGG F
Sbjct: 7 GDIVVELYDDKAPITVENFLAYVRKGFYDNTI--------FHRVISGFVIQGGGF 53
coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain
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Score = 49.7 bits (119), Expect = 3e-09
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 66
G + EL D PK ENF + C + + FHR I++FMIQGGD
Sbjct: 9 GDLNLELHCDKAPKACENFIKLCKKGYYDGTI--------FHRSIRNFMIQGGD 54
This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2
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Score = 49.5 bits (118), Expect = 3e-09
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 12 IGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 66
+G + EL+ + PKT +NF + + + G FHR+IKDFMIQGGD
Sbjct: 6 MGEITLELYWNHAPKTCKNFYELAKRGY--------YNGTIFHRLIKDFMIQGGD 52
These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain
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Score = 47.5 bits (113), Expect = 2e-08
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 66
G + LF + PKT ENF + + FHRVIK FMIQ GD
Sbjct: 7 GDIHIRLFPEEAPKTVENFTTHARNGY--------YNNTIFHRVIKGFMIQTGD 52
This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148
>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
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Score = 46.4 bits (110), Expect = 5e-08
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
G ++ + F D P+T +NF +C F + + FHRVI FMIQGG F
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREGFYNNTI--------FHRVINGFMIQGGGF 55
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16
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Score = 45.8 bits (109), Expect = 9e-08
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 18 ELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 66
EL++ PK NF Q C + + FHRV+ F+IQGGD
Sbjct: 20 ELWSKEAPKACRNFIQLCLEGY--------YDNTIFHRVVPGFIIQGGD 60
C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional
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Score = 45.2 bits (107), Expect = 2e-07
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRD---AVPIGFKGASFHRV 56
GR++FELF DVVP+T ENFR TG D V + + H V
Sbjct: 67 GRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHV 113
>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
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Score = 37.1 bits (86), Expect = 1e-04
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
T G + EL + P + +NF + F + +FHRVI FMIQGG F
Sbjct: 34 TTSAGNIELELNSQKAPVSVKNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGF 84
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)
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Score = 36.9 bits (86), Expect = 2e-04
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 12 IGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 66
+G ++ +LF D P NF + C ++ + F+ V KDF+ Q GD
Sbjct: 6 LGDLVIDLFTDECPLACLNFLKLCKLKY--------YNFCLFYNVQKDFIAQTGD 52
This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
>KOG0546|consensus
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Probab=99.97 E-value=1.2e-32 Score=191.67 Aligned_cols=72 Identities=53% Similarity=0.912 Sum_probs=69.4
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcc---cCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFR---RDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~---~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||++++.+.|||+||||.|.||+|||||++||+|+.+ ..+++++|+|+.||||+++|||||||++.+||
T Consensus 11 ~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnG 85 (372)
T KOG0546|consen 11 VFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNG 85 (372)
T ss_pred EEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCC
Confidence 6999999999999999999999999999999999999986 66789999999999999999999999999987
>KOG0879|consensus
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Probab=99.96 E-value=5.5e-30 Score=160.03 Aligned_cols=72 Identities=65% Similarity=1.129 Sum_probs=70.1
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
||||+++++.++|||.||||.|.+|+|+|||+++|+|++..++.+++||++.||||+++|||||||+.+++|
T Consensus 13 VF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDG 84 (177)
T KOG0879|consen 13 VFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDG 84 (177)
T ss_pred EEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCC
Confidence 799999999999999999999999999999999999999888999999999999999999999999999886
>KOG0880|consensus
Back Show alignment and domain information
Probab=99.94 E-value=1.2e-26 Score=151.43 Aligned_cols=68 Identities=46% Similarity=0.763 Sum_probs=63.5
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||.++++..|||+|+||...+|+|++||++||.+.. ++.+|++++||||+|||||||||++.++|
T Consensus 42 V~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~----~~~gY~gS~FhRVi~nfmIQGGd~t~g~g 109 (217)
T KOG0880|consen 42 VYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGE----KGYGYKGSKFHRVIPNFMIQGGDFTKGDG 109 (217)
T ss_pred EEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCC----CCcccCCceeeeeecCceeecCccccCCC
Confidence 799999999999999999999999999999999999532 37889999999999999999999999876
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Back Show alignment and domain information
Probab=99.92 E-value=4.7e-25 Score=143.21 Aligned_cols=71 Identities=59% Similarity=1.045 Sum_probs=63.4
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 71 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~ 71 (74)
|||||++++++.|||+||||.+.+|+||+||++||++++...+...+|+++.||||+|+++||+||+..++
T Consensus 21 v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~ 91 (186)
T PLN03149 21 VFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGD 91 (186)
T ss_pred EEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCC
Confidence 68999999999999999999999999999999999987643444567999999999999999999986443
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain
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Probab=99.91 E-value=3.8e-24 Score=136.20 Aligned_cols=71 Identities=55% Similarity=0.969 Sum_probs=60.9
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 71 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~ 71 (74)
||||+++++++.|+|+||||.+.||+||+||++||++..+...+...|+++.||||+|+++||+||+..++
T Consensus 3 v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~ 73 (164)
T cd01926 3 VFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGN 73 (164)
T ss_pred EEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCC
Confidence 69999999999999999999999999999999999875421112345999999999999999999987543
This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
>PTZ00060 cyclophilin; Provisional
Back Show alignment and domain information
Probab=99.90 E-value=1e-23 Score=136.59 Aligned_cols=70 Identities=44% Similarity=0.823 Sum_probs=61.2
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcc-cCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFR-RDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~-~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
||||+++++++.|+|+||||.+.||+||+||++||++... ..++...|+++.||||+|+++||+||+...
T Consensus 18 v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~ 88 (183)
T PTZ00060 18 VFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNH 88 (183)
T ss_pred EEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCC
Confidence 6999999999999999999999999999999999987542 122344599999999999999999998754
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=99.90 E-value=9.5e-24 Score=134.39 Aligned_cols=57 Identities=42% Similarity=0.688 Sum_probs=53.7
Q ss_pred eCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCC
Q psy11623 7 TPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 71 (74)
Q Consensus 7 ~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~ 71 (74)
+..|+.|+|+||||++.||+||+||++||+.++ |+|+.||||+|+|||||||+..+.
T Consensus 3 ~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~--------Ydg~~FHRVi~~FmiQgGd~~~~~ 59 (158)
T COG0652 3 ILETNKGDITIELYPDKAPKTVANFLQLVKEGF--------YDGTIFHRVIPGFMIQGGDPTGGD 59 (158)
T ss_pred eeeccCCCEEEEECCCcCcHHHHHHHHHHHcCC--------CCCceEEEeecCceeecCCCCCCC
Confidence 457889999999999999999999999999999 999999999999999999999764
>PTZ00221 cyclophilin; Provisional
Back Show alignment and domain information
Probab=99.89 E-value=6.1e-23 Score=138.38 Aligned_cols=69 Identities=32% Similarity=0.496 Sum_probs=61.2
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcc---cCCcccccCCCeEEEEecC-CEEEeccCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFR---RDAVPIGFKGASFHRVIKD-FMIQGGDFVN 69 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~---~~~~~~~Y~~~~f~ri~~~-~~iq~Gd~~~ 69 (74)
||||+++++.+.|+|+||||.+.||+||+||++||+|+++ ..+..++|+++.||||+++ +|||+||+..
T Consensus 55 Vfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~ 127 (249)
T PTZ00221 55 AFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS 127 (249)
T ss_pred EEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence 7999999999999999999999999999999999998764 1233456999999999985 8999999864
>KOG0111|consensus
Back Show alignment and domain information
Probab=99.87 E-value=2.6e-23 Score=138.63 Aligned_cols=67 Identities=48% Similarity=0.789 Sum_probs=65.2
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
||+|+.+.+...|||+++|..|.+|+|++||+.||+++. +++|+||.||||||.||+||||++++||
T Consensus 139 v~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~-----gfgykgssfhriip~fmcqggdftn~ng 205 (298)
T KOG0111|consen 139 VYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEA-----GFGYKGSSFHRIIPKFMCQGGDFTNGNG 205 (298)
T ss_pred hhhheeecccccceEEEeecccCChhhhhhhhhhccccC-----ccCccccchhhhhhhhhccCCccccCCC
Confidence 699999999999999999999999999999999999998 8899999999999999999999999987
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Back Show alignment and domain information
Probab=99.84 E-value=3.8e-21 Score=122.81 Aligned_cols=54 Identities=39% Similarity=0.785 Sum_probs=51.3
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
.|+.|+|+||||.+.||+|++||++||+.++ |+++.||||+|+|||||||+..+
T Consensus 5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Yd~~~fhRvi~~f~iQgGd~~~~ 58 (164)
T PRK10791 5 HTNHGDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQGGGFEPG 58 (164)
T ss_pred EEccccEEEEEeCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEecCcEEEeCCcCCC
Confidence 5789999999999999999999999999999 99999999999999999997654
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain
Back Show alignment and domain information
Probab=99.84 E-value=3.2e-21 Score=121.22 Aligned_cols=53 Identities=40% Similarity=0.676 Sum_probs=50.5
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|+.|+|+||||.+.||+||+||++||++++ |+++.||||+|+++||+||+..
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~Rvi~~f~iq~Gd~~~ 55 (148)
T cd01927 3 HTTKGDIHIRLFPEEAPKTVENFTTHARNGY--------YNNTIFHRVIKGFMIQTGDPTG 55 (148)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHhhcCC--------cCCcEEEEEcCCcEEEecccCC
Confidence 5789999999999999999999999999999 9999999999999999999863
This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E
Back Show alignment and domain information
Probab=99.84 E-value=6.3e-21 Score=120.62 Aligned_cols=54 Identities=39% Similarity=0.750 Sum_probs=51.1
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
.|+.|+|+||||.+.||+||+||++||+.++ |+++.||||+|++|||+||+...
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Yd~~~fhRvi~~f~iQ~Gd~~~~ 56 (155)
T cd01920 3 QTSLGDIVVELYDDKAPITVENFLAYVRKGF--------YDNTIFHRVISGFVIQGGGFTPD 56 (155)
T ss_pred EecceeEEEEEeCCCCcHHHHHHHHHHhcCC--------CCCCEEEEEeCCcEEEeCCCCCC
Confidence 4789999999999999999999999999999 99999999999999999998754
coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)
Back Show alignment and domain information
Probab=99.84 E-value=6e-21 Score=121.77 Aligned_cols=53 Identities=30% Similarity=0.590 Sum_probs=50.7
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|+.|+|+||||.+.||+||+||++||++++ |+++.||||+|+++||+||+..
T Consensus 3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~--------Y~g~~fhrvi~~f~iQgGd~~~ 55 (166)
T cd01921 3 ETTLGDLVIDLFTDECPLACLNFLKLCKLKY--------YNFCLFYNVQKDFIAQTGDPTG 55 (166)
T ss_pred EeccCCEEEEEcCCCCCHHHHHHHHHHhcCC--------cCCCEEEEEeCCceEEECCcCC
Confidence 4789999999999999999999999999999 9999999999999999999864
This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like
Back Show alignment and domain information
Probab=99.83 E-value=7e-21 Score=120.27 Aligned_cols=53 Identities=42% Similarity=0.807 Sum_probs=50.8
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|+.|+|+||||.+.||+||+||++||++++ |+++.|||++|++++|+||+..
T Consensus 6 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~rv~~~f~iq~Gd~~~ 58 (153)
T cd01928 6 HTNLGDIKIELFCDDCPKACENFLALCASGY--------YNGCIFHRNIKGFMVQTGDPTG 58 (153)
T ss_pred EEccccEEEEEcCCCCcHHHHHHHHHHhcCc--------cCCcEEEEeCCCCEEEccccCC
Confidence 5789999999999999999999999999999 9999999999999999999864
Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2
Back Show alignment and domain information
Probab=99.83 E-value=8.7e-21 Score=119.07 Aligned_cols=53 Identities=42% Similarity=0.812 Sum_probs=50.5
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|+.|+|+||||.+.||+||+||++||++++ |+++.|||++|+++||+||+..
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~Rvi~~f~iq~Gd~~~ 55 (146)
T cd01922 3 ETTMGEITLELYWNHAPKTCKNFYELAKRGY--------YNGTIFHRLIKDFMIQGGDPTG 55 (146)
T ss_pred EeccccEEEEEcCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEcCCcEEEecccCC
Confidence 4789999999999999999999999999999 9999999999999999999863
These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Back Show alignment and domain information
Probab=99.83 E-value=1.7e-20 Score=122.21 Aligned_cols=54 Identities=37% Similarity=0.715 Sum_probs=51.1
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
.|+.|+|+||||.+.||+|++||++||+.++ |+++.|||++|+||||+||+...
T Consensus 34 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~--------Ydg~~FhRvi~~f~iQgG~~~~~ 87 (190)
T PRK10903 34 TTSAGNIELELNSQKAPVSVKNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFTEQ 87 (190)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEeCCceEEeCCcCCC
Confidence 4789999999999999999999999999999 99999999999999999997653
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain
Back Show alignment and domain information
Probab=99.82 E-value=2.1e-20 Score=118.63 Aligned_cols=53 Identities=42% Similarity=0.810 Sum_probs=50.6
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|+.|+|+||||.+.||+||+||++||+.++ |+++.||||+|+++||+||+..
T Consensus 5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~rv~~~~~iq~Gd~~~ 57 (159)
T cd01923 5 HTNKGDLNLELHCDKAPKACENFIKLCKKGY--------YDGTIFHRSIRNFMIQGGDPTG 57 (159)
T ss_pred EEccccEEEEEeCCCChHHHHHHHHHHhcCc--------cCCcEEEEEeCCcEEEecccCC
Confidence 4789999999999999999999999999999 9999999999999999999864
This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms
Back Show alignment and domain information
Probab=99.82 E-value=7.2e-20 Score=114.48 Aligned_cols=59 Identities=46% Similarity=0.854 Sum_probs=55.6
Q ss_pred eEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 2 SFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 2 ~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
|+||..++ .|+|+||||.+.||++|+||++||+.+. |+++.|||++|+++||+||+...
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~f~ri~~~~~i~~G~~~~~ 59 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSGF--------YDGTKFHRIIPNFVIQGGDPTGN 59 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTTS--------STTEBEEEEETTTEEEESSTTTS
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcccc--------cCCceeecccccceeeeeeccCC
Confidence 78898866 9999999999999999999999999998 99999999999999999998764
It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40
Back Show alignment and domain information
Probab=99.82 E-value=4.1e-20 Score=119.23 Aligned_cols=54 Identities=30% Similarity=0.468 Sum_probs=51.3
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
.|+.|+|+||||.+.||+||+||++||+.++ |+++.||||+|+||||+||+...
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~--------Ydg~~FhRVi~~fviQgGdp~~~ 56 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGF--------YDGMEFHRVEGGFVVQTGDPQGK 56 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCC--------cCCCEEEEecCCcEEEecCCCCC
Confidence 5789999999999999999999999999999 99999999999999999998754
Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16
Back Show alignment and domain information
Probab=99.81 E-value=5.8e-20 Score=117.84 Aligned_cols=53 Identities=36% Similarity=0.718 Sum_probs=50.5
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|+.|+|+||||.+.+|+||+||++||+.++ |+++.|||++|+++||+||+..
T Consensus 11 ~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~--------Y~~~~f~Rvi~~f~iQgGd~~~ 63 (171)
T cd01925 11 KTTAGDIDIELWSKEAPKACRNFIQLCLEGY--------YDNTIFHRVVPGFIIQGGDPTG 63 (171)
T ss_pred EEccccEEEEEeCCCChHHHHHHHHHHhcCC--------CCCCEEEEEcCCcEEEccccCC
Confidence 5789999999999999999999999999999 9999999999999999999863
C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases
Back Show alignment and domain information
Probab=99.79 E-value=2.6e-19 Score=111.16 Aligned_cols=56 Identities=46% Similarity=0.833 Sum_probs=51.9
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
.|+.|+|+||||.+.+|++|+||++||++++ |+++.|||++|+++||+||+....+
T Consensus 3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~--------Y~~~~f~rv~~~~~iq~Gd~~~~~~ 58 (146)
T cd00317 3 DTTKGRIVIELYGDEAPKTVENFLSLARGGF--------YDGTTFHRVIPGFMIQGGDPTGTGG 58 (146)
T ss_pred EeccCcEEEEEcCCCChHHHHHHHHHHhcCC--------cCCCEEEEEeCCCeEEECCCCCCCC
Confidence 4667999999999999999999999999999 9999999999999999999876543
This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
>KOG0881|consensus
Back Show alignment and domain information
Probab=99.78 E-value=7.9e-20 Score=113.35 Aligned_cols=54 Identities=39% Similarity=0.799 Sum_probs=51.5
Q ss_pred CCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 8 PTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 8 ~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.+|.+|.|++|||-..||+||+||.+|++.++ |+|..||||+++|||||||++.
T Consensus 14 LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgY--------Yn~v~FHRii~DFmiQGGDPTG 67 (164)
T KOG0881|consen 14 LETSMGKITLELYWKHAPRTCQNFAELARRGY--------YNGVIFHRIIKDFMIQGGDPTG 67 (164)
T ss_pred EeecccceehhhhhhcCcHHHHHHHHHHhccc--------ccceeeeehhhhheeecCCCCC
Confidence 35788999999999999999999999999999 9999999999999999999985
>KOG0865|consensus
Back Show alignment and domain information
Probab=99.74 E-value=7.3e-19 Score=112.83 Aligned_cols=67 Identities=51% Similarity=0.930 Sum_probs=62.1
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEE---EecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR---VIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~r---i~~~~~iq~Gd~~~~~g 72 (74)
||+|++++++++|+++++||.|.+|+|+|||..||++++ +++|+++.||| .++++|+|+||++.+||
T Consensus 6 vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgek-----g~~yk~s~fhr~~~~~~~fm~qggDft~hng 75 (167)
T KOG0865|consen 6 VFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEK-----GFGYKGSCFHRLIPIIPGFMCQGGDFTCHNG 75 (167)
T ss_pred eeeeeeecCccccccceecccccCcchHhhhhhcccCCC-----ccccccchhhhccccccceeeccCcccccCC
Confidence 799999999999999999999999999999999999876 77799999999 44579999999998886
>KOG0883|consensus
Back Show alignment and domain information
Probab=99.69 E-value=5.3e-18 Score=120.14 Aligned_cols=52 Identities=38% Similarity=0.786 Sum_probs=50.4
Q ss_pred eeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 10 ~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
|+.|.|-+||++|.+|++|+||++||+.+| |+|+.|||.|.|||||||||+.
T Consensus 284 Tn~G~lNlELhcd~~P~aceNFI~lc~~gY--------Ynnt~FHRsIrnFmiQGGDPTG 335 (518)
T KOG0883|consen 284 TNHGPLNLELHCDYAPRACENFITLCKNGY--------YNNTIFHRSIRNFMIQGGDPTG 335 (518)
T ss_pred ccCCceeeEeecCcchHHHHHHHHHHhccc--------ccchHHHHHHHHHeeeCCCCCC
Confidence 678999999999999999999999999999 9999999999999999999985
>KOG0885|consensus
Back Show alignment and domain information
Probab=99.66 E-value=5.3e-17 Score=114.30 Aligned_cols=54 Identities=33% Similarity=0.689 Sum_probs=51.6
Q ss_pred CCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 8 PTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 8 ~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
-.|+.|+|.|||++..||++|+||++||..++ |+|+.|||++|+|.+||||+..
T Consensus 17 l~TT~G~I~iELW~kE~P~acrnFiqKOGegy--------y~nt~fhrlvp~f~~Qggdp~~ 70 (439)
T KOG0885|consen 17 LKTTKGDIDIELWAKECPKACRNFIQLCLEGY--------YDNTEFHRLVPGFLVQGGDPTG 70 (439)
T ss_pred EEeccCceeeeehhhhhhHHHHHHHHHHHhcc--------ccCceeeeeccchhcccCCCCC
Confidence 35789999999999999999999999999999 9999999999999999999985
>KOG0884|consensus
Back Show alignment and domain information
Probab=99.64 E-value=1.9e-16 Score=97.93 Aligned_cols=53 Identities=40% Similarity=0.838 Sum_probs=50.8
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
-+..|+|.||||.+.+|+|||||+.||...+ |++|.|||-+|+||+|+||+..
T Consensus 6 ht~~gdikiev~~e~tpktce~~l~~~~~~~--------~n~~~~~~~~~~f~v~~~~~~~ 58 (161)
T KOG0884|consen 6 HTDVGDIKIEVFCERTPKTCENFLALCASDY--------YNGCIFHRNIKGFMVQTGDPTH 58 (161)
T ss_pred eeccCcEEEEEEecCChhHHHHHHHHhhhhh--------ccceeecCCCCCcEEEeCCCCC
Confidence 4678999999999999999999999999999 9999999999999999999985
>KOG0882|consensus
Back Show alignment and domain information
Probab=99.60 E-value=2.5e-16 Score=113.12 Aligned_cols=56 Identities=34% Similarity=0.614 Sum_probs=52.4
Q ss_pred eCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 7 TPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 7 ~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
+--|+.|+|.|.||++.||+|+|||-.-|+.+| |+|..||||+++||||+|||...
T Consensus 408 iihtt~gdi~~kl~p~ecpktvenf~th~rngy--------y~~~~fhriik~fmiqtgdp~g~ 463 (558)
T KOG0882|consen 408 IIHTTQGDIHIKLYPEECPKTVENFTTHSRNGY--------YDNHTFHRIIKGFMIQTGDPLGD 463 (558)
T ss_pred EEEecccceEEEecccccchhhhhhhccccCcc--------ccCcchHHhhhhheeecCCCCCC
Confidence 345889999999999999999999999999999 99999999999999999999853
>KOG0415|consensus
Back Show alignment and domain information
Probab=99.53 E-value=9.6e-15 Score=102.87 Aligned_cols=54 Identities=30% Similarity=0.588 Sum_probs=52.2
Q ss_pred CCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 8 PTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 8 ~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
-.|++|+|+|.||.+.+|+||.||++||+-+| |+.|.||.|..+|.+|+|||+.
T Consensus 5 ieTtlGDlvIDLf~~erP~~clNFLKLCk~KY--------YN~clfh~vq~~f~aQTGDPtG 58 (479)
T KOG0415|consen 5 IETTLGDLVIDLFVKERPRTCLNFLKLCKIKY--------YNFCLFHTVQRDFTAQTGDPTG 58 (479)
T ss_pred EEeecccEEeeeecccCcHHHHHHHHHHhHhh--------cccceeeeccccceeecCCCCC
Confidence 46889999999999999999999999999999 9999999999999999999986
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=90.07 E-value=0.71 Score=33.99 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEEecCCCChhhHHHHHHHHh
Q psy11623 14 RMIFELFADVVPKTSENFRQFCT 36 (74)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~l~~ 36 (74)
=|.||||.+.||+++.-|+.+..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 46899999999999999998764
>PRK00969 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=89.64 E-value=1.2 Score=33.45 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.4
Q ss_pred eEEEEecCCCChhhHHHHHHHHhcC
Q psy11623 14 RMIFELFADVVPKTSENFRQFCTGE 38 (74)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~l~~~~ 38 (74)
=|.||||.+.||+|+.-|+++.--.
T Consensus 379 vi~IeLydd~AP~s~~yFR~~tGL~ 403 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVTGLK 403 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhcCCc
Confidence 4689999999999999999876543
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3
Back Show alignment and domain information
Probab=88.95 E-value=0.41 Score=35.73 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.9
Q ss_pred eEEEEecCCCChhhHHHHHHHHhc
Q psy11623 14 RMIFELFADVVPKTSENFRQFCTG 37 (74)
Q Consensus 14 ~i~ieL~~~~~P~t~~nF~~l~~~ 37 (74)
=|.|+||.+.||+|+.-|+++.--
T Consensus 376 vi~IeLydd~AP~s~~yFRk~tGL 399 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFTGL 399 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhcCC
Confidence 468999999999999999987643
A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins
Back Show alignment and domain information
Probab=88.41 E-value=0.74 Score=29.27 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=18.5
Q ss_pred eeEEEEecCCCChhhHHHHHHHH
Q psy11623 13 GRMIFELFADVVPKTSENFRQFC 35 (74)
Q Consensus 13 G~i~ieL~~~~~P~t~~nF~~l~ 35 (74)
-..+.+|..|.||+||+-|.+.=
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH-
T ss_pred eEEEEEEcccCChHHHHHHHHhC
Confidence 36789999999999999998764
The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
>KOG0882|consensus
Back Show alignment and domain information
Probab=81.96 E-value=0.44 Score=35.55 Aligned_cols=51 Identities=27% Similarity=0.362 Sum_probs=46.1
Q ss_pred eeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 11 EIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 11 ~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
..-.|.++++.+-.|.-++-|..+|.-.+ +++..+.+|.+.+++|.||...
T Consensus 110 ~~s~IAVs~~~sg~i~VvD~~~d~~q~~~--------fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 110 KISLIAVSLFKSGKIFVVDGFGDFCQDGY--------FKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred eeeeEEeecccCCCcEEECCcCCcCccce--------ecccccCceEEEEeecccccee
Confidence 34489999999999999999999999988 9999999999999999999753
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 74
d1a33a_ 174
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (
6e-14 d1ihga2 195
b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain
6e-12 d1qoia_ 173
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom
7e-12 d2cfea1 162
b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s
3e-11 d1h0pa_ 182
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd
3e-11 d1z81a1 186
b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas
4e-11 d1zkca1 178
b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso
7e-11 d1xwna1 166
b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome
1e-10 d2z6wa1 164
b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c
1e-10 d1w74a_ 171
b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase
2e-10 d2rmca_ 182
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
1e-09 d2c3ba1 171
b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper
2e-09 d1qnga_ 170
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
2e-09 d2igva1 172
b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno
2e-09 d1xo7a_ 166
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom
8e-09 d2r99a1 161
b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
2e-08 d2ok3a1 159
b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B
3e-07 d1lopa_ 164
b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase
8e-07 d1v9ta_ 166
b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase
5e-06 d2fu0a1 155
b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {
5e-05 d2a2na1 164
b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma
5e-05 d2b71a1 169
b.62.1.1 (A:23-191) Cyclophilin-like protein PY006
0.001
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174
Back Hide information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]
Score = 60.6 bits (146), Expect = 6e-14
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 9 TKEIGRMIFELFADVVPKTSENFRQFCT---GEFRRDAVPIGFKGASFHRVIKDFMIQGG 65
GR++ EL+ D+ P+T NF CT G + P+ +KG++FHRVIK+FMIQGG
Sbjct: 14 GNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGG 73
Query: 66 DFVN 69
DF
Sbjct: 74 DFTK 77
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.6 bits (133), Expect = 6e-12
Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGE---FRRDAVPIGFKGASFHRVIKDFMIQGGD 66
+ +GR++ ELFAD+VPKT+ENFR CTGE P+ FKG FHR+IK FMIQGGD
Sbjct: 26 ERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGD 85
Query: 67 FVN 69
F N
Sbjct: 86 FSN 88
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
Score = 55.3 bits (132), Expect = 7e-12
Identities = 48/58 (82%), Positives = 55/58 (94%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
+E+GRM ELFADVVPKT+ENFRQFCTGEFR+D VPIG+KG++FHRVIKDFMIQGGDF
Sbjct: 18 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDF 75
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]
Score = 53.2 bits (127), Expect = 3e-11
Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
+G + F+LF DVVPKT+ NFR CTGE G+ G+ FHRVI DFM+QGGDF
Sbjct: 13 APLGTIKFKLFDDVVPKTAANFRALCTGEK-----GFGYAGSHFHRVIPDFMLQGGDFTA 67
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]
Score = 53.3 bits (127), Expect = 3e-11
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
K IGR++ LF VPKT+ NF + + G+ G+ FHRVI DFMIQGGDF
Sbjct: 18 KPIGRIVIGLFGKTVPKTATNFIELA-----KKPKGEGYPGSKFHRVIADFMIQGGDFTR 72
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]
Score = 53.3 bits (127), Expect = 4e-11
Identities = 37/58 (63%), Positives = 48/58 (82%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
+G+ FELF ++VPKTSENFRQFCTGE++ + +P+G+K FHRVIK+FMIQGGDF
Sbjct: 28 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDF 85
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (125), Expect = 7e-11
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
G + EL D+ PKT ENF + C + + G FHR I++F+IQGGD
Sbjct: 10 GDLNLELHCDLTPKTCENFIRLCKKHY--------YDGTIFHRSIRNFVIQGGDP 56
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (124), Expect = 1e-10
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 4 PTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQ 63
P +G ++ EL+ PKT +NF + + + G FHR+IKDFMIQ
Sbjct: 12 PNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKFHRIIKDFMIQ 63
Query: 64 GGDFVN 69
GGD
Sbjct: 64 GGDPTG 69
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 1e-10
Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
K +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI FM Q GDF N
Sbjct: 14 KPLGRVVLELKADVVPKTAENFRALCTGEK-----GFGYKGSTFHRVIPSFMCQAGDFTN 68
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 51.4 bits (122), Expect = 2e-10
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGE-------FRRDAVPIGFKGASF 53
++ T T G + LF + PKT NF G + GA F
Sbjct: 1 LATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVF 60
Query: 54 HRVIKDFMIQGGDF 67
HRVI+ FMIQGGD
Sbjct: 61 HRVIQGFMIQGGDP 74
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]
Score = 49.1 bits (116), Expect = 1e-09
Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 5/58 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
K++GR++ LF +VVPKT ENF TGE G+KG+ FHRVIKDFMIQGGDF
Sbjct: 19 KDVGRIVIGLFGNVVPKTVENFVALATGEK-----GYGYKGSIFHRVIKDFMIQGGDF 71
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]
Score = 48.7 bits (115), Expect = 2e-09
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 4 PTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQ 63
P GT ++GR++F LF VPKT++NFR+ C ++ ++FHR+I +FMIQ
Sbjct: 12 PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-----YRESTFHRIIPNFMIQ 66
Query: 64 GGDFVN 69
GGDF
Sbjct: 67 GGDFTR 72
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]
Score = 48.7 bits (115), Expect = 2e-09
Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGFKGASFHRVIKDFMIQGGDFV 68
GR+IFELF+D+ P+T ENFR CTGE + +K + FHR+I FM QGGD
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 69 N 69
N
Sbjct: 75 N 75
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]
Score = 48.3 bits (114), Expect = 2e-09
Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
K GR++ EL+ DVVPKT+ NFR CTGE + P+ FKG+ FHR+I +FMIQGGDF
Sbjct: 15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDF 74
Query: 68 VN 69
Sbjct: 75 TR 76
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]
Score = 46.8 bits (110), Expect = 8e-09
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 10 KEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69
+ +GR++ LF + VPKT ENF+Q +GE G+KG+ FHRVI++FMIQGGDF N
Sbjct: 17 EPVGRVVIGLFGNDVPKTVENFKQLASGEN-----GFGYKGSIFHRVIRNFMIQGGDFTN 71
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 2e-08
Identities = 32/61 (52%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFV 68
K GR+ L +DVVP T+ENFR CT E FKG+SFHR+I FM QGGDF
Sbjct: 12 NKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-----FKGSSFHRIIPQFMCQGGDFT 66
Query: 69 N 69
N
Sbjct: 67 N 67
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 3e-07
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 11 EIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
++G + E+F + PKT ENF C + + FHR IK FM+Q GD
Sbjct: 8 DVGDIKIEVFCERTPKTCENFLALCASNYYNGCI--------FHRNIKGFMVQTGDP 56
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Score = 41.4 bits (96), Expect = 8e-07
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQ 63
G ++ + F D P+T +NF +C F + FHRVI FMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQ 51
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Score = 39.5 bits (91), Expect = 5e-06
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 13 GRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72
G + EL P + +NF + F + +FHRVI FMIQGG F
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFTEQMQ 65
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]
Score = 36.8 bits (84), Expect = 5e-05
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 12 IGRMIFELFADVVPKTSENFRQFC 35
+G + LF KT +NF
Sbjct: 10 MGDIHISLFYKECKKTVQNFSVHS 33
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 5e-05
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 12 IGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 71
+G + +LF PKT ENF + + G +FHR+IK FMIQ GD
Sbjct: 18 MGDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRIIKGFMIQTGDPTGTG 69
Query: 72 M 72
M
Sbjct: 70 M 70
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]
Score = 32.9 bits (74), Expect = 0.001
Identities = 12/56 (21%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 13 GRMIFELFADVVPKTSENFRQFCT-GEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 67
G EL+ PKT NF C G + +GG
Sbjct: 26 GDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKS 81
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 74
d2r99a1 161
Mitochondrial peptidyl-prolyl cis-trans isomerase,
99.91 d1z81a1 186
Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId
99.91 d2cfea1 162
Cyclophilin-like allergen Mal s 6 {Malassezia symp
99.91 d2igva1 172
Cyclophilin (eukaryotic) {Caenorhabditis elegans,
99.91 d1h0pa_ 182
Cyclophilin (eukaryotic) {Caenorhabditis elegans,
99.91 d2z6wa1 164
Mitochondrial peptidyl-prolyl cis-trans isomerase,
99.9 d1xo7a_ 166
Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId
99.9 d1a33a_ 174
Cyclophilin (eukaryotic) {Nematode (Brugia malayi)
99.9 d2rmca_ 182
Cyclophilin (eukaryotic) {Mouse (Mus musculus), va
99.9 d1qoia_ 173
Cyclophilin (eukaryotic) {Human (Homo sapiens), U4
99.9 d1qnga_ 170
Cyclophilin (eukaryotic) {Plasmodium falciparum [T
99.9 d1ihga2 195
Cyclophilin 40 isomerase domain {Cow (Bos taurus)
99.88 d2c3ba1 171
Cyclophilin (eukaryotic) {Aspergillus fumigatus [T
99.87 d2ok3a1 159
Cyclophilin-like protein PPIL3B {Human (Homo sapie
99.83 d2fu0a1 155
Putative cyclophilin PFE0505w {Plasmodium falcipar
99.83 d1v9ta_ 166
Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche
99.82 d1lopa_ 164
Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche
99.82 d1xwna1 166
Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
99.8 d2a2na1 164
Peptidylprolyl isomerase domain and WD repeat-cont
99.79 d1zkca1 178
Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop
99.78 d2b71a1 169
Cyclophilin-like protein PY00693 {Plasmodium yoeli
99.78 d1w74a_ 171
Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob
99.75
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.4e-24 Score=135.14 Aligned_cols=67 Identities=49% Similarity=0.760 Sum_probs=60.8
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||+++++++|+|+||||.+.||+||+||++||++.+ ...|+++.|||++|++++|+||+...++
T Consensus 4 vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~-----~~~Y~g~~f~Rv~~~~~iq~G~~~~~~~ 70 (161)
T d2r99a1 4 VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK-----GFGFKGSSFHRIIPQFMCQGGDFTNHNG 70 (161)
T ss_dssp EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-----SCCSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred EEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhcc-----ccccCCcEEEEEEEeeeEEeeeccCCCC
Confidence 799999999999999999999999999999999997654 2339999999999999999999987543
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]
Probab=99.91 E-value=1.3e-24 Score=137.84 Aligned_cols=72 Identities=53% Similarity=0.993 Sum_probs=66.6
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||+++++++|+|+||||.+.||+||+||++||++++....+.++|+++.|||++|++++|+||....+|
T Consensus 19 V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~ 90 (186)
T d1z81a1 19 VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNG 90 (186)
T ss_dssp EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSS
T ss_pred EEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCccccCC
Confidence 799999999999999999999999999999999999998666677889999999999999999999876543
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]
Probab=99.91 E-value=1.4e-24 Score=135.24 Aligned_cols=67 Identities=49% Similarity=0.876 Sum_probs=62.1
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||+++++++|+|+||||.+.||+|++||++||+++. ...|+++.|||++|++++|+||+...++
T Consensus 4 V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~-----~~~Y~g~~f~rv~~~~~iq~G~~~~~~~ 70 (162)
T d2cfea1 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEK-----GFGYAGSHFHRVIPDFMLQGGDFTAGNG 70 (162)
T ss_dssp EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-----SCCSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred EEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhcc-----CCccCCCEEEEEEecceEecCCCCCCCC
Confidence 799999999999999999999999999999999999986 3349999999999999999999987653
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]
Probab=99.91 E-value=2.1e-24 Score=135.40 Aligned_cols=72 Identities=49% Similarity=0.868 Sum_probs=64.3
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcc--cCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFR--RDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~--~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||+++++++|+|+||||.+.||+||+||++||+++.. ...+...|+++.|||++|++++|+||+..++|
T Consensus 6 v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~ 79 (172)
T d2igva1 6 VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG 79 (172)
T ss_dssp EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred EEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCCCC
Confidence 7999999999999999999999999999999999998653 33455569999999999999999999887654
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]
Probab=99.91 E-value=1.6e-24 Score=136.96 Aligned_cols=67 Identities=43% Similarity=0.714 Sum_probs=61.1
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||+++++++|+|+||||.+.||+||+||++||++++ ...|+++.|||++|++++|+||...++|
T Consensus 9 vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~-----~~~y~g~~f~rv~~~~~iq~G~~~~~~~ 75 (182)
T d1h0pa_ 9 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPK-----GEGYPGSKFHRVIADFMIQGGDFTRGDG 75 (182)
T ss_dssp EEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCT-----TTSSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred EEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcc-----cCCcCCceEEEEEecceEEcCCCCCCCC
Confidence 799999999999999999999999999999999998763 2239999999999999999999987654
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.2e-24 Score=133.66 Aligned_cols=67 Identities=52% Similarity=0.880 Sum_probs=61.2
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||+++++++|+|+||||.+.||+||+||++||++++ ...|+++.|||++|++++|+||+...++
T Consensus 5 v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~-----~~~Y~g~~f~rv~~~~~iq~g~~~~~~~ 71 (164)
T d2z6wa1 5 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK-----GFGYKGSTFHRVIPSFMCQAGDFTNHNG 71 (164)
T ss_dssp EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-----SCCSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred EEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCC-----CcccCCcEEEEecccceEecCCccCCCC
Confidence 799999999999999999999999999999999998774 3339999999999999999999987543
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.90 E-value=4.1e-24 Score=133.31 Aligned_cols=67 Identities=48% Similarity=0.863 Sum_probs=62.6
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||+++++++|+|+||||.+.||+||+||++||++++ ..+|+++.|||++|++++|+||....+|
T Consensus 8 V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~-----~~~Y~g~~f~rv~~~~~iq~G~~~~~~~ 74 (166)
T d1xo7a_ 8 VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGEN-----GFGYKGSIFHRVIRNFMIQGGDFTNFDG 74 (166)
T ss_dssp EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-----SCCSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred EEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccc-----cccccCcEEEEEcCCCEEEeCCCCCCCC
Confidence 799999999999999999999999999999999999887 5569999999999999999999887653
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]
Probab=99.90 E-value=6.7e-24 Score=132.93 Aligned_cols=72 Identities=40% Similarity=0.753 Sum_probs=63.7
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcc---cCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFR---RDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~---~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||+++++++|+|+||||.+.||+||+||++||+++.+ ...+...|+++.|||++|++++|+||...+++
T Consensus 6 v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~ 80 (174)
T d1a33a_ 6 VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDG 80 (174)
T ss_dssp EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred EEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCC
Confidence 7999999999999999999999999999999999998653 22344569999999999999999999987643
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]
Probab=99.90 E-value=1.1e-23 Score=133.23 Aligned_cols=66 Identities=53% Similarity=0.896 Sum_probs=60.9
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 71 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~ 71 (74)
|||||+++++++|+|+||||.+.||+||+||++||++++ ...|+++.|||++|++++|+||+...+
T Consensus 10 vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k-----~~~Y~g~~f~rv~~~~~iq~G~~~~~~ 75 (182)
T d2rmca_ 10 VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEK-----GYGYKGSIFHRVIKDFMIQGGDFTARD 75 (182)
T ss_dssp EEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTT-----SCSSTTCBEEEEETTTEEEECCCSSSS
T ss_pred EEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCC-----CccccCceeeeeecCceEEcCCCCCCC
Confidence 799999999999999999999999999999999998875 334999999999999999999987654
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
Probab=99.90 E-value=8.2e-24 Score=132.42 Aligned_cols=72 Identities=71% Similarity=1.185 Sum_probs=66.6
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||+++++++|+|+||||.+.||+||+||++||+.++....+..+|+++.|||++|++++|+||...+.+
T Consensus 9 v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~ 80 (173)
T d1qoia_ 9 VFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDG 80 (173)
T ss_dssp EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred EEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccccccCCCCCcCCcccceeccceeeccCCcccCCc
Confidence 799999999999999999999999999999999999887666677889999999999999999999886543
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]
Probab=99.90 E-value=7.5e-24 Score=132.50 Aligned_cols=72 Identities=43% Similarity=0.771 Sum_probs=63.9
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcc-cCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFR-RDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~-~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||+++++++|+|+||||.+.||+||+||++||++.+. ...+...|+++.|||+++++++|+||...+++
T Consensus 6 vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~ 78 (170)
T d1qnga_ 6 VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNG 78 (170)
T ss_dssp EEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred EEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCccCcccceEEEeCceEEecCccCCCC
Confidence 7999999999999999999999999999999999997654 22344569999999999999999999987654
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.88 E-value=7.2e-23 Score=130.61 Aligned_cols=72 Identities=53% Similarity=0.945 Sum_probs=63.6
Q ss_pred CeEeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcc---cCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFR---RDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~---~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||+++++++|+|+||||.+.||+||+||++||+++.+ ...+...|+++.|||++|++++|+||....+|
T Consensus 17 v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~~~ 91 (195)
T d1ihga2 17 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNG 91 (195)
T ss_dssp EEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred EEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCCCC
Confidence 6999999999999999999999999999999999998754 22345569999999999999999999876543
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]
Probab=99.87 E-value=9e-23 Score=127.85 Aligned_cols=67 Identities=42% Similarity=0.826 Sum_probs=56.5
Q ss_pred CeEeee-----eCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCCC
Q psy11623 1 MSFPTG-----TPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 72 (74)
Q Consensus 1 v~~di~-----~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~g 72 (74)
|||||. +..|+.|+|+||||.+.||+||+||++||++++ ..+|+++.|||++|++++|+||+...+|
T Consensus 4 v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~-----~~~y~~~~f~ri~~~~~iq~G~~~~~~~ 75 (171)
T d2c3ba1 4 VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPA-----GEGYRESTFHRIIPNFMIQGGDFTRGNG 75 (171)
T ss_dssp EEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCT-----TTSSTTCBCCEEETTTEEEECC------
T ss_pred EEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhcc-----cccccCceeeEEEEEEeeEcCCccCCCC
Confidence 799997 677899999999999999999999999999876 4459999999999999999999876543
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=4.5e-21 Score=118.71 Aligned_cols=58 Identities=36% Similarity=0.740 Sum_probs=53.0
Q ss_pred eeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 4 PTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 4 di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
.|.+ .|+.|+|+||||.+.||+||+||++||++++ |+++.|||++|+++||+||+...
T Consensus 2 sV~~-~T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~--------Y~~~~f~rv~~~~~iq~Gd~~~~ 59 (159)
T d2ok3a1 2 SVTL-HTDVGDIKIEVFCERTPKTCENFLALCASNY--------YNGCIFHRNIKGFMVQTGDPTGT 59 (159)
T ss_dssp EEEE-EETTEEEEEEECTTTCHHHHHHHHHHHHTTT--------TTTCBCCEEETTTEEEECCTTSS
T ss_pred EEEE-EeCCeEEEEEEcCCCChHHHHHHHHHHhhhc--------ccceeEecccCCeEEEeCCcccc
Confidence 3444 6779999999999999999999999999999 99999999999999999998754
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]
Probab=99.83 E-value=4.4e-21 Score=118.15 Aligned_cols=55 Identities=33% Similarity=0.521 Sum_probs=52.0
Q ss_pred CCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 8 PTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 8 ~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
-.|++|+|+||||.+.||+||+||++||++++ |+|+.|||++|++++|+||+...
T Consensus 6 i~T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~--------Y~g~~f~rv~~~~~iq~Gd~~~~ 60 (155)
T d2fu0a1 6 IYTTMGDIHISLFYKECKKTVQNFSVHSINGY--------YNNCIFHRVIKHFMVQTGDPSGD 60 (155)
T ss_dssp EEETTEEEEEEECTTTCHHHHHHHHHHHHTTT--------TTTCBCCEEETTTEEEECCTTSS
T ss_pred EEEcccEEEEEEcCCCChHHHHHHhhHhhCCc--------cccceeeeeeecceeeccCCCCC
Confidence 46789999999999999999999999999999 99999999999999999999753
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=9.2e-21 Score=117.91 Aligned_cols=55 Identities=36% Similarity=0.679 Sum_probs=51.9
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 71 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~~ 71 (74)
.|+.|+|+||||.+.||+||+||++||++++ |+++.|||++|++++|+||.....
T Consensus 10 ~T~~G~i~ieL~~~~aP~tv~nF~~L~~~~~--------Y~g~~fhRv~~~~~iq~G~~~~~~ 64 (166)
T d1v9ta_ 10 TTSAGNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFTEQM 64 (166)
T ss_dssp EETTEEEEEEECTTTCHHHHHHHHHHHHTTT--------TTTCBEEEEETTTEEEESSBCTTC
T ss_pred EECCeeEEEEEeCCCChHHHHHHHHHhhCCc--------cccceeeEEEEEeecccCCcCCcc
Confidence 5678999999999999999999999999999 999999999999999999988654
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=3.8e-21 Score=119.46 Aligned_cols=54 Identities=39% Similarity=0.785 Sum_probs=51.2
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
.|+.|+|+||||.+.||+||+||++||+.++ |+|+.|||++|++++|+||+...
T Consensus 5 ~T~~G~i~ieL~~~~aP~t~~nF~~l~~~g~--------Y~g~~fhrv~~~~~iq~G~~~~~ 58 (164)
T d1lopa_ 5 HTNHGDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQGGGFEPG 58 (164)
T ss_dssp EETTEEEEEEECTTTSHHHHHHHHHHHHTTT--------TTTEECCEEETTTEEEESSEETT
T ss_pred EeCCeEEEEEEcCCCCHHHHHHHHHHHHccC--------cCCceeeEEcCCceeeeeccccC
Confidence 5789999999999999999999999999999 99999999999999999998654
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=3e-20 Score=115.72 Aligned_cols=53 Identities=42% Similarity=0.834 Sum_probs=50.2
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|++|+|+||||.+.||+||+||++||+.++ |+++.|||+++++++|+||+..
T Consensus 17 ~T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~--------Y~g~~f~rv~~~~~iq~Gd~~~ 69 (166)
T d1xwna1 17 ETSMGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKFHRIIKDFMIQGGDPTG 69 (166)
T ss_dssp EESSCEEEEEECTTTCHHHHHHHHHHHHHTS--------STTCCEEEEETTTEEEECCSTT
T ss_pred EECceeEEEEEcCCCChHHHHHHHHHHhcCC--------cCceeeeEEcccEEEEeCCCCC
Confidence 4667999999999999999999999999999 9999999999999999999864
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=6.4e-20 Score=113.54 Aligned_cols=60 Identities=35% Similarity=0.576 Sum_probs=55.2
Q ss_pred EeeeeCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 3 FPTGTPTKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 3 ~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
.+.++-.|+.|+|+||||.+.||+||+||++||+.++ |+++.|||+++++++|+||+...
T Consensus 9 ~~~a~~~T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~--------Y~g~~f~rv~~~~~iq~G~~~~~ 68 (164)
T d2a2na1 9 SDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRIIKGFMIQTGDPTGT 68 (164)
T ss_dssp CSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTT--------TTTCBCCEEETTTEEEECCTTSS
T ss_pred cCEEEEEeceeEEEEEEcCCCChHHHHHHHHHHhCCC--------cccceeeEEeeeeeEeecccccc
Confidence 4556677999999999999999999999999999999 99999999999999999998643
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.9e-19 Score=113.24 Aligned_cols=53 Identities=42% Similarity=0.834 Sum_probs=50.7
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
.|+.|+|+||||.+.||+||+||++||++++ |+++.|||++|++++|+||+..
T Consensus 6 ~T~~G~i~IeL~~~~aP~tv~nF~~L~~~~~--------Y~g~~f~rv~~~~~iq~Gd~~~ 58 (178)
T d1zkca1 6 HTNKGDLNLELHCDLTPKTCENFIRLCKKHY--------YDGTIFHRSIRNFVIQGGDPTG 58 (178)
T ss_dssp EETTEEEEEEECTTTSHHHHHHHHHHHHTTT--------TTTEEEEEEETTTEEEECCTTS
T ss_pred EeCCEEEEEEEcCCCChHHHHHHHHHHhcCC--------cCceEeeeccceeEEecCCccC
Confidence 4778999999999999999999999999999 9999999999999999999865
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]
Probab=99.78 E-value=1.7e-19 Score=112.52 Aligned_cols=54 Identities=39% Similarity=0.664 Sum_probs=51.2
Q ss_pred CeeeeeEEEEecCCCChhhHHHHHHHHhcCcccCCcccccCCCeEEEEecCCEEEeccCCCC
Q psy11623 9 TKEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 70 (74)
Q Consensus 9 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~~ 70 (74)
.|..|+|+||||.+.||+||+||++||+.++ |+++.|||+++++++|+||....
T Consensus 22 ~T~~G~i~IeL~~d~aP~tv~nF~~L~~~g~--------Y~~~~f~rv~~~~~iq~g~~~~~ 75 (169)
T d2b71a1 22 YTNLGDFEVELYWYHSPKTCLNFYTLCEMGF--------YDNTIFHRVIPNFVIQGGDPTGT 75 (169)
T ss_dssp EETTEEEEEEECTTTSHHHHHHHHHHHHTTT--------TTTEEEEEEETTTEEEEEETTSS
T ss_pred EeCceeEEEEEeCCCCcHHHHHHHHHhhCCc--------cceeeeccccceeeEeccccccc
Confidence 4678999999999999999999999999999 99999999999999999998764
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=9.9e-19 Score=108.82 Aligned_cols=63 Identities=38% Similarity=0.558 Sum_probs=53.5
Q ss_pred eCCeeeeeEEEEecCCCChhhHHHHHHHHhcCcc-------cCCcccccCCCeEEEEecCCEEEeccCCC
Q psy11623 7 TPTKEIGRMIFELFADVVPKTSENFRQFCTGEFR-------RDAVPIGFKGASFHRVIKDFMIQGGDFVN 69 (74)
Q Consensus 7 ~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~~~~~-------~~~~~~~Y~~~~f~ri~~~~~iq~Gd~~~ 69 (74)
+-.|..|+|+||||.+.||+||+||++||+++++ .......|+++.|||+++++++|+||+..
T Consensus 7 ti~T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~ 76 (171)
T d1w74a_ 7 TLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG 76 (171)
T ss_dssp EEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTS
T ss_pred EEEECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccC
Confidence 3468899999999999999999999999998743 11233459999999999999999999875
