Psyllid ID: psy11627

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
MDTDEVESSSSGPMSSLNSLFSFTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCVTIPRSLDGRLQQIETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISVRPFRRLVLANI
ccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEEccccccEEEccccEEEEEcccccccccccccccccccccccHHHHHHHHHHcccEEEEEEccEEEEEEccccEEEEEccccccccccccccEEEccccccEEEEEHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHcc
cccccccccccccccccHccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccEEccccEEccccEEEEcccccccccccEccccccccccccHHHHHHHccccccEEEEEEccEEEEEEcccccEEEEcHHHHHHHcccccccEEEccccEEEEEEHHHHHHHHHHHccccHHHHHHccHHHEEEEHHHHHHEEEcc
mdtdevessssgpmsslnslfsftSPAVKKLlgwkqgdeeEKWAEKAVDSLVKKLKKSKGDIEELEralscpgqpskcvtiprsldgrlqqietpppaysppqdekhgsqsphsenamdtgissdvtpvpyqeqpfWASIAYYELNSRVGevfhcqshsvivdgftnpsnnlnrfclgqlsnvnrnstientrrhigKGVHLYYVGGEVYaeclsdsaifvqsrncnhhhgfhqstvckipagcslkiFNNQEFAELLSQSVNHGFEAVYELTKMCTISVRPFRRLVLANI
mdtdevessssgpmsslnslFSFTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEEleralscpgqpskCVTIPRSLDGRLQQIETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQlsnvnrnstientrrhigkGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKmctisvrpfrrLVLANI
MDTDEVEssssgpmsslnslfsFTSPAVKKLLGWKQGDEEEKWAEkavdslvkklkkskGDIEELERALSCPGQPSKCVTIPRSLDGRLQQIETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISVRPFRRLVLANI
**************************AVKKLLGW**********************************************************************************************VPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISVRPFRRLVL***
**********************FTSPAVKKLLG*****************LV*KLKKSKGDIEELER***************************************************************YQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLN********************RHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQ***HGFEAVYELTKMCTISVRPFRRLVLANI
***************SLNSLFSFTSPAVKKLLGWKQGDEEEKWAEKAVDSLV********************GQPSKCVTIPRSLDGRLQQIETPP*********************MDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISVRPFRRLVLANI
******************SLFSFTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPGQPSKCVTIPRSLDGRLQQ**TPPP******************N*******SDVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISVRPFRRLVLANI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
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MDTDEVESSSSGPMSSLNSLFSFTSPAVKKLLGWKQGDEEEKWAEKAxxxxxxxxxxxxxxxxxxxxxLSCPGQPSKCVTIPRSLDGRLQQIETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISVRPFRRLVLANI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query291 2.2.26 [Sep-21-2011]
P42003455 Protein mothers against d yes N/A 0.701 0.448 0.730 2e-80
Q56I99465 Mothers against decapenta yes N/A 0.646 0.404 0.743 3e-80
Q9I962465 Mothers against decapenta N/A N/A 0.646 0.404 0.726 5e-79
Q9W7E7464 Mothers against decapenta yes N/A 0.625 0.392 0.732 5e-79
Q1JQA2465 Mothers against decapenta no N/A 0.642 0.402 0.738 4e-78
P97454465 Mothers against decapenta yes N/A 0.632 0.395 0.723 6e-78
Q15797465 Mothers against decapenta yes N/A 0.642 0.402 0.738 6e-78
Q5R6H7465 Mothers against decapenta no N/A 0.646 0.404 0.733 6e-78
Q99717465 Mothers against decapenta no N/A 0.646 0.404 0.733 6e-78
Q9R1V3465 Mothers against decapenta yes N/A 0.646 0.404 0.728 1e-77
>sp|P42003|MAD_DROME Protein mothers against dpp OS=Drosophila melanogaster GN=Mad PE=1 SV=1 Back     alignment and function desciption
 Score =  298 bits (764), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 152/208 (73%), Positives = 164/208 (78%), Gaps = 4/208 (1%)

Query: 73  GQPSKCVTIPRSLDGRLQQIETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQ 132
           G PS   + P S    L    TPPPAYSP +D    S +P+    +      DV  V Y 
Sbjct: 201 GSPSSVNSNPNSPYDSLAG--TPPPAYSPSEDGN--SNNPNDGGQLLDAQMGDVAQVSYS 256

Query: 133 EQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENT 192
           E  FWASIAYYELN RVGEVFHC ++SVIVDGFTNPSNN +R CLGQLSNVNRNSTIENT
Sbjct: 257 EPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENT 316

Query: 193 RRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQ 252
           RRHIGKGVHLYYV GEVYAECLSDSAIFVQSRNCN+HHGFH STVCKIP GCSLKIFNNQ
Sbjct: 317 RRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPSTVCKIPPGCSLKIFNNQ 376

Query: 253 EFAELLSQSVNHGFEAVYELTKMCTISV 280
           EFA+LLSQSVN+GFEAVYELTKMCTI +
Sbjct: 377 EFAQLLSQSVNNGFEAVYELTKMCTIRM 404
Required for the function of decapentaplegic. May play an important role in mediating Dpp signaling. Involved in the BMP signaling pathway.
Drosophila melanogaster (taxid: 7227)
>sp|Q56I99|SMAD5_CHICK Mothers against decapentaplegic homolog 5 OS=Gallus gallus GN=SMAD5 PE=2 SV=1 Back     alignment and function description
>sp|Q9I962|SMAD1_COTJA Mothers against decapentaplegic homolog 1 OS=Coturnix coturnix japonica GN=SMAD1 PE=2 SV=1 Back     alignment and function description
>sp|Q9W7E7|SMAD5_DANRE Mothers against decapentaplegic homolog 5 OS=Danio rerio GN=smad5 PE=2 SV=1 Back     alignment and function description
>sp|Q1JQA2|SMAD1_BOVIN Mothers against decapentaplegic homolog 1 OS=Bos taurus GN=SMAD1 PE=1 SV=1 Back     alignment and function description
>sp|P97454|SMAD5_MOUSE Mothers against decapentaplegic homolog 5 OS=Mus musculus GN=Smad5 PE=1 SV=2 Back     alignment and function description
>sp|Q15797|SMAD1_HUMAN Mothers against decapentaplegic homolog 1 OS=Homo sapiens GN=SMAD1 PE=1 SV=1 Back     alignment and function description
>sp|Q5R6H7|SMAD5_PONAB Mothers against decapentaplegic homolog 5 OS=Pongo abelii GN=SMAD5 PE=2 SV=1 Back     alignment and function description
>sp|Q99717|SMAD5_HUMAN Mothers against decapentaplegic homolog 5 OS=Homo sapiens GN=SMAD5 PE=1 SV=1 Back     alignment and function description
>sp|Q9R1V3|SMAD5_RAT Mothers against decapentaplegic homolog 5 OS=Rattus norvegicus GN=Smad5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
149039814341 MAD homolog 5 (Drosophila) [Rattus norve 0.917 0.782 0.693 1e-102
296481840344 TPA: MAD, mothers against decapentaplegi 0.910 0.770 0.676 1e-100
116004081344 mothers against decapentaplegic homolog 0.920 0.779 0.670 1e-98
307193580 468 Protein mothers against dpp [Harpegnatho 0.725 0.450 0.787 7e-91
350419588 468 PREDICTED: protein mothers against dpp-l 0.683 0.425 0.82 6e-90
340712860 468 PREDICTED: LOW QUALITY PROTEIN: protein 0.683 0.425 0.82 7e-90
395861779370 PREDICTED: mothers against decapentapleg 0.907 0.713 0.577 1e-88
332026752 469 Protein mothers against dpp [Acromyrmex 0.725 0.449 0.769 4e-88
307167671 469 Protein mothers against dpp [Camponotus 0.725 0.449 0.760 1e-87
345484661 486 PREDICTED: protein mothers against dpp [ 0.707 0.423 0.747 1e-86
>gi|149039814|gb|EDL93930.1| MAD homolog 5 (Drosophila) [Rattus norvegicus] Back     alignment and taxonomy information
 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/290 (69%), Positives = 221/290 (76%), Gaps = 23/290 (7%)

Query: 14  MSSLNSLFSFTSPAVKKLLGWKQGDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPG 73
           M+S+ SLFSFTSPAVK+LLGWKQGDEEEKWAEKAVD+LVKKLKK KG +EELE+ALS PG
Sbjct: 1   MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSSPG 60

Query: 74  QPSKCVTIPRSLDGRLQ---QIETPPPAYSP----PQDEKHGSQSPHSENAMDTGI---- 122
           QPSKCVTIPRSLDGRLQ   +   P   Y      P  + H    P        G     
Sbjct: 61  QPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDICEFPFGSKQKE 120

Query: 123 ------------SSDVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSN 170
                       S DV PV Y+E   W SI YYELN+RVGE FH  S SV+VDGFT+P+N
Sbjct: 121 VCINPYHYKRVESPDVQPVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTDPAN 180

Query: 171 NLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHH 230
           N +RFCLG LSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDS+IFVQSRNCN HH
Sbjct: 181 NKSRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNFHH 240

Query: 231 GFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISV 280
           GFH +TVCKIP+ CSLKIFNNQEFA+LL+QSVNHGFEAVYELTKMCTI +
Sbjct: 241 GFHPTTVCKIPSSCSLKIFNNQEFAQLLAQSVNHGFEAVYELTKMCTIRM 290

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|296481840|tpg|DAA23955.1| TPA: MAD, mothers against decapentaplegic homolog 9 [Bos taurus] Back     alignment and taxonomy information
>gi|116004081|ref|NP_001070396.1| mothers against decapentaplegic homolog 9 [Bos taurus] gi|115371654|gb|ABI96186.1| mothers against decapentaplegic-like 9 [Bos taurus] Back     alignment and taxonomy information
>gi|307193580|gb|EFN76318.1| Protein mothers against dpp [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350419588|ref|XP_003492235.1| PREDICTED: protein mothers against dpp-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340712860|ref|XP_003394971.1| PREDICTED: LOW QUALITY PROTEIN: protein mothers against dpp-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|395861779|ref|XP_003803152.1| PREDICTED: mothers against decapentaplegic homolog 9 [Otolemur garnettii] Back     alignment and taxonomy information
>gi|332026752|gb|EGI66861.1| Protein mothers against dpp [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307167671|gb|EFN61174.1| Protein mothers against dpp [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345484661|ref|XP_001601460.2| PREDICTED: protein mothers against dpp [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query291
FB|FBgn0011648455 Mad "Mothers against dpp" [Dro 0.694 0.443 0.737 4e-106
UNIPROTKB|Q56IA0465 SMAD1 "Uncharacterized protein 0.711 0.445 0.686 1.2e-100
UNIPROTKB|Q6PF32464 smad1 "Xmad protein" [Xenopus 0.711 0.446 0.703 1.2e-100
UNIPROTKB|Q9I962465 SMAD1 "Mothers against decapen 0.711 0.445 0.686 1.2e-100
UNIPROTKB|F1NWQ2468 SMAD5 "Mothers against decapen 0.639 0.397 0.751 1.6e-100
UNIPROTKB|Q56I99465 SMAD5 "Mothers against decapen 0.639 0.4 0.751 1.6e-100
UNIPROTKB|Q91913464 Mad1 "Mad1 protein" [Xenopus l 0.711 0.446 0.703 1.6e-100
UNIPROTKB|Q91693464 XMad "Mothers against DPP" [Xe 0.711 0.446 0.703 2.5e-100
UNIPROTKB|P79947467 smad1 "Smad1.1" [Xenopus laevi 0.711 0.443 0.703 4.1e-100
UNIPROTKB|Q6DIS7464 smad1 "SMAD family member 1" [ 0.711 0.446 0.699 4.1e-100
FB|FBgn0011648 Mad "Mothers against dpp" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 773 (277.2 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
 Identities = 152/206 (73%), Positives = 163/206 (79%)

Query:    73 GQPSKCVTIPRSLDGRLQQIETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQ 132
             G PS   + P S    L    TPPPAYSP +D    S +P+    +      DV  V Y 
Sbjct:   201 GSPSSVNSNPNSPYDSLAG--TPPPAYSPSEDGN--SNNPNDGGQLLDAQMGDVAQVSYS 256

Query:   133 EQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENT 192
             E  FWASIAYYELN RVGEVFHC ++SVIVDGFTNPSNN +R CLGQLSNVNRNSTIENT
Sbjct:   257 EPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENT 316

Query:   193 RRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQ 252
             RRHIGKGVHLYYV GEVYAECLSDSAIFVQSRNCN+HHGFH STVCKIP GCSLKIFNNQ
Sbjct:   317 RRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPSTVCKIPPGCSLKIFNNQ 376

Query:   253 EFAELLSQSVNHGFEAVYELTKMCTI 278
             EFA+LLSQSVN+GFEAVYELTKMCTI
Sbjct:   377 EFAQLLSQSVNNGFEAVYELTKMCTI 402
GO:0005737 "cytoplasm" evidence=IDA;TAS
GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=IGI;NAS;TAS
GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IDA
GO:0005634 "nucleus" evidence=IDA;TAS
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEP;IMP
GO:0005515 "protein binding" evidence=IPI
GO:0042078 "germ-line stem cell division" evidence=IMP;TAS
GO:0030718 "germ-line stem cell maintenance" evidence=IMP
GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA
GO:0030618 "transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity" evidence=NAS
GO:0003677 "DNA binding" evidence=TAS
GO:0030707 "ovarian follicle cell development" evidence=IMP;TAS
GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IDA
GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IPI
GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP
GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP
GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS
GO:0045705 "negative regulation of salivary gland boundary specification" evidence=TAS
GO:0007507 "heart development" evidence=TAS
GO:0007391 "dorsal closure" evidence=NAS
GO:0007424 "open tracheal system development" evidence=TAS
GO:0005667 "transcription factor complex" evidence=IEA
GO:0045887 "positive regulation of synaptic growth at neuromuscular junction" evidence=IMP
GO:0048100 "wing disc anterior/posterior pattern formation" evidence=IMP
GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IMP
GO:0035019 "somatic stem cell maintenance" evidence=IMP
GO:0010629 "negative regulation of gene expression" evidence=IDA
GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0001745 "compound eye morphogenesis" evidence=IMP
GO:0035290 "trunk segmentation" evidence=IMP
GO:0045595 "regulation of cell differentiation" evidence=IMP
GO:0007488 "histoblast morphogenesis" evidence=IMP
GO:0061353 "BMP signaling pathway involved in Malpighian tubule cell chemotaxis" evidence=IDA
UNIPROTKB|Q56IA0 SMAD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6PF32 smad1 "Xmad protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q9I962 SMAD1 "Mothers against decapentaplegic homolog 1" [Coturnix japonica (taxid:93934)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWQ2 SMAD5 "Mothers against decapentaplegic homolog 5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q56I99 SMAD5 "Mothers against decapentaplegic homolog 5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q91913 Mad1 "Mad1 protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q91693 XMad "Mothers against DPP" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|P79947 smad1 "Smad1.1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6DIS7 smad1 "SMAD family member 1" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P97454SMAD5_MOUSENo assigned EC number0.72360.63230.3956yesN/A
Q15797SMAD1_HUMANNo assigned EC number0.73840.64260.4021yesN/A
Q9W7E7SMAD5_DANRENo assigned EC number0.73230.62540.3922yesN/A
Q9R1V3SMAD5_RATNo assigned EC number0.72820.64600.4043yesN/A
Q56I99SMAD5_CHICKNo assigned EC number0.74350.64600.4043yesN/A
P42003MAD_DROMENo assigned EC number0.73070.70100.4483yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
cd10497201 cd10497, MH2_SMAD_1_5_9, C-terminal Mad Homology 2 1e-108
cd10495182 cd10495, MH2_R-SMAD, C-terminal Mad Homology 2 (MH 4e-98
cd10985191 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 ( 2e-87
cd00050170 cd00050, MH2, C-terminal Mad Homology 2 (MH2) doma 5e-84
pfam03166179 pfam03166, MH2, MH2 domain 1e-80
smart00524171 smart00524, DWB, Domain B in dwarfin family protei 1e-72
cd10490124 cd10490, MH1_SMAD_1_5_9, N-terminal Mad Homology 1 4e-44
cd10498222 cd10498, MH2_SMAD_4, C-terminal Mad Homology 2 (MH 1e-34
cd10488123 cd10488, MH1_R-SMAD, N-terminal Mad Homology 1 (MH 1e-29
cd10491124 cd10491, MH1_SMAD_2_3, N-terminal Mad Homology 1 ( 3e-28
cd00049121 cd00049, MH1, N-terminal Mad Homology 1 (MH1) doma 2e-27
cd10496165 cd10496, MH2_I-SMAD, C-terminal Mad Homology 2 (MH 1e-17
smart00523109 smart00523, DWA, Domain A in dwarfin family protei 6e-17
cd10492125 cd10492, MH1_SMAD_4, N-terminal Mad Homology 1 (MH 4e-16
pfam03165103 pfam03165, MH1, MH1 domain 2e-15
cd10499174 cd10499, MH2_SMAD_6, C-terminal Mad Homology 2 (MH 2e-11
cd10500171 cd10500, MH2_SMAD_7, C-terminal Mad Homology 2 (MH 1e-08
>gnl|CDD|199822 cd10497, MH2_SMAD_1_5_9, C-terminal Mad Homology 2 (MH2) domain in SMAD1, SMAD5 and SMAD9 Back     alignment and domain information 
 Score =  312 bits (801), Expect = e-108
 Identities = 128/148 (86%), Positives = 137/148 (92%)

Query: 131 YQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIE 190
           YQE  +W SIAYYELN+RVGE FH  S S+IVDGFT+PSNN +RFCLG LSNVNRNSTIE
Sbjct: 1   YQEPKYWCSIAYYELNNRVGEAFHASSTSIIVDGFTDPSNNSDRFCLGLLSNVNRNSTIE 60

Query: 191 NTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFN 250
           NTRRHIGKGVHLYYVGGEVYAECLSDS+IFVQSRNCN+HHGFH +TVCKIP GCSLKIFN
Sbjct: 61  NTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNYHHGFHPTTVCKIPPGCSLKIFN 120

Query: 251 NQEFAELLSQSVNHGFEAVYELTKMCTI 278
           NQEFA+LLSQSVNHGFEAVYELTKMCTI
Sbjct: 121 NQEFAQLLSQSVNHGFEAVYELTKMCTI 148

The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain, which prevents it from forming a complex with SMAD4. SMAD1, SMAD5 and SMAD9 (also known as SMAD8), are receptor regulated SMADs (R-SMADs). SMAD1 plays an essential role in bone development and postnatal bone formation through activation by bone morphogenetic protein (BMP) type 1 receptor kinase. SMAD5 is involved in BMP signal modulation and may also play a role in the pathway involving inhibition of hematopoietic progenitor cells by TGF-beta. SMAD9 mediates the differentiation of mesenchymal stem cells (MSCs) into tendon-like cells by inhibiting the osteogenic pathway. Length = 201
>gnl|CDD|199820 cd10495, MH2_R-SMAD, C-terminal Mad Homology 2 (MH2) domain in receptor regulated SMADs Back     alignment and domain information
>gnl|CDD|199826 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3 Back     alignment and domain information
>gnl|CDD|199819 cd00050, MH2, C-terminal Mad Homology 2 (MH2) domain Back     alignment and domain information
>gnl|CDD|217398 pfam03166, MH2, MH2 domain Back     alignment and domain information
>gnl|CDD|197770 smart00524, DWB, Domain B in dwarfin family proteins Back     alignment and domain information
>gnl|CDD|199814 cd10490, MH1_SMAD_1_5_9, N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8) Back     alignment and domain information
>gnl|CDD|199823 cd10498, MH2_SMAD_4, C-terminal Mad Homology 2 (MH2) domain in SMAD4 Back     alignment and domain information
>gnl|CDD|199812 cd10488, MH1_R-SMAD, N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs Back     alignment and domain information
>gnl|CDD|199815 cd10491, MH1_SMAD_2_3, N-terminal Mad Homology 1 (MH1) domain in SMAD2 and SMAD3 Back     alignment and domain information
>gnl|CDD|199811 cd00049, MH1, N-terminal Mad Homology 1 (MH1) domain Back     alignment and domain information
>gnl|CDD|199821 cd10496, MH2_I-SMAD, C-terminal Mad Homology 2 (MH2) domain in Inhibitory SMADs Back     alignment and domain information
>gnl|CDD|214708 smart00523, DWA, Domain A in dwarfin family proteins Back     alignment and domain information
>gnl|CDD|199816 cd10492, MH1_SMAD_4, N-terminal Mad Homology 1 (MH1) domain in SMAD4 Back     alignment and domain information
>gnl|CDD|217397 pfam03165, MH1, MH1 domain Back     alignment and domain information
>gnl|CDD|199824 cd10499, MH2_SMAD_6, C-terminal Mad Homology 2 (MH2) domain in SMAD6 Back     alignment and domain information
>gnl|CDD|199825 cd10500, MH2_SMAD_7, C-terminal Mad Homology 2 (MH2) domain in SMAD7 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 291
KOG3701|consensus411 100.0
cd00050176 MH2 MH2 domain; C terminal domain of SMAD family p 100.0
smart00524171 DWB Domain B in dwarfin family proteins. 100.0
PF03166181 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwa 100.0
cd00049121 MH1 MH1 is a small DNA binding domain, binding in 99.83
smart00523109 DWA Domain A in dwarfin family proteins. 99.67
PF03165103 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwa 99.59
PF10401180 IRF-3: Interferon-regulatory factor 3; InterPro: I 98.03
KOG2884|consensus259 81.31
>KOG3701|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.6e-85  Score=634.36  Aligned_cols=271  Identities=54%  Similarity=0.841  Sum_probs=233.3

Q ss_pred             ccccCCCChHHHHHHhcccC-CChhhhHHHHHHHHHHHHhhhccCcHHHHHHHHhcCC-CCCcceEecccCCCCCCc---
Q psy11627         17 LNSLFSFTSPAVKKLLGWKQ-GDEEEKWAEKAVDSLVKKLKKSKGDIEELERALSCPG-QPSKCVTIPRSLDGRLQQ---   91 (291)
Q Consensus        17 ~~~~~~~~~~~v~~Ll~~kq-g~eee~~~~kai~sLvKKLKkk~~~le~L~~Av~~~g-~~s~CVtiprsLDGRlqv---   91 (291)
                      ++++++|++|+|+.||+||| |++||+|++||++|||||||||+++||+|++||+++| .+++||||||+|||||||   
T Consensus         1 ~~~~~~~~~p~v~~~~~~r~~~~~~e~~~~ka~~slvkklk~~~~~le~l~~av~s~g~~~~~CvtiprslD~Rlq~~~r   80 (411)
T KOG3701|consen    1 TSSLLPFTGPAVKDLLGPRQLGGEDEKFAEKAVESLVKKLKDKKGELENLIKAVESPGTKPTGCVTIPRSLDGRLQVAHR   80 (411)
T ss_pred             CCcccCCCCcchhhccCccccCchhHHHHHHHHHHHHHHhhcccchHHHHHHHhcCCCCCCCceEECCCCCCccccccCC
Confidence            46789999999999999999 9999999999999999999999899999999999998 569999999999999999   


Q ss_pred             ----------------------------------------------------ccCCCCCCCCCC---CCCCC--------
Q psy11627         92 ----------------------------------------------------IETPPPAYSPPQ---DEKHG--------  108 (291)
Q Consensus        92 ----------------------------------------------------~~sppp~y~~~~---~~~~~--------  108 (291)
                                                                          ++.++|++....   .....        
T Consensus        81 kg~Phviy~rlwRwpdl~~~~elk~l~~C~~a~~~~~~~vC~NPyHy~rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (411)
T KOG3701|consen   81 KGFPHVIYCRLWRWPDLQKNHELKRLECCEHAFESKSDNVCINPYHYSRVESPPILPPPLSPNSPPNDALKTLLDDGGVD  160 (411)
T ss_pred             CCCCceEEEEeecccccccchhheecccCCccccCCCCCeeeCCcccceeecCCCCCcccCCCCCccccccchhhccccc
Confidence                                                                112233332110   00000        


Q ss_pred             ---C--CCCC----------------CCC--C------C-CCC-C------CCCCCCCCCCCCCceEEEEEEeecccccc
Q psy11627        109 ---S--QSPH----------------SEN--A------M-DTG-I------SSDVTPVPYQEQPFWASIAYYELNSRVGE  151 (291)
Q Consensus       109 ---~--~~~~----------------~~~--p------~-~~~-~------~~~~~~v~~~e~~~WCsIaYyEl~~RVGe  151 (291)
                         .  +.+.                ++.  |      . +++ .      .++..++.|+++++||+|+|||+++||||
T Consensus       161 ~~~~~~P~n~~~~~~~~~~~~~tp~~~~~~~P~~~~~p~s~~~~~~~~P~~~P~~~~~~~~~~~~WcsIaYyEl~~rVGE  240 (411)
T KOG3701|consen  161 IVNRSMPQNNHSSDLIGPHAPHTPDSSQIPAPLGDGGPSSDSSALPGLPTDSPDVGPVHYEEPKSWCSIAYYELNTRVGE  240 (411)
T ss_pred             ccccCCCcccccccccccCCCCCCCcccCCCCCCCCCCCCcccccCCCCCCCCccCcccccCCcceeEEEEeeccccccc
Confidence               0  0000                001  1      0 001 0      02344578999999999999999999999


Q ss_pred             eeeeecCeEEEcCccCCCCCCCceeeccccCCCCChhhHHhhhccCCceEEEEECCEEEEEeCCCceeeecCCCCCCCCC
Q psy11627        152 VFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHG  231 (291)
Q Consensus       152 ~F~a~~~sv~VDGf~dps~~~~RfcLg~lsnv~R~~~ve~tR~~IG~GV~L~~~~g~V~~~nlS~~~VFVqSp~ln~~~g  231 (291)
                      +|+|+.++++||||+||+++ +|||||+|+|+||+++++++|+|||+||+|++++|+|||||+|+++|||||++||+.+|
T Consensus       241 ~f~v~~~~~~vDG~~dps~~-~rfcLgqlsn~~Rn~~~e~~R~~IG~GV~L~~~~gdVw~~n~sd~pIFVqS~~ln~~~g  319 (411)
T KOG3701|consen  241 TFHVPGPSITVDGFTDPSNG-SRFCLGQLSNVNRNEKVEKTRAHIGKGVQLSYENGDVWLYNLSDYPIFVQSPNLNYPNG  319 (411)
T ss_pred             eEEecCCceEEeeeecCCCC-CceeeccccCCCccchhHHHHhhccCceeeeEecCcEEEEecCCCceeeeCCCCcCCCC
Confidence            99999999999999999754 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceeEcCCCceEEeeehHHHHHHHHHhhhcCCccccccCCCceeEEEeeeccccc
Q psy11627        232 FHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISVRPFRRLVLA  289 (291)
Q Consensus       232 ~~~~tV~KI~pg~slKIFd~~~fa~~L~~~~~~g~~~v~~L~~~CtiRISFvKG~g~~  289 (291)
                      +++++||||+||++|||||+ +|+++|.+++.+|++++|+|++||+||||||||||+.
T Consensus       320 ~~~~~v~ki~Pg~~iKvFd~-~~~~~l~~s~~~g~~~~~~l~~~ctIriSFvKGWG~~  376 (411)
T KOG3701|consen  320 RTLDTVHKVPPGYSIKVFDF-EFAQQLPTSADPGFESVDQLRKMCTIRISFVKGWGEC  376 (411)
T ss_pred             CcccceEeeCCCceeEeech-HHHhhhhhcccCCCccccccccceeEEEEEecccccc
Confidence            99999999999999999999 8999999999999999999999999999999999985

>cd00050 MH2 MH2 domain; C terminal domain of SMAD family proteins, responsible for receptor interaction, transactivation, and homo- and heterooligomerisation; also known as Domain B in dwarfin family proteins Back     alignment and domain information
>smart00524 DWB Domain B in dwarfin family proteins Back     alignment and domain information
>PF03166 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth [] Back     alignment and domain information
>cd00049 MH1 MH1 is a small DNA binding domain, binding in an unusal way involving a beta hairpin structure binding to the major groove Back     alignment and domain information
>smart00523 DWA Domain A in dwarfin family proteins Back     alignment and domain information
>PF03165 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth [] Back     alignment and domain information
>PF10401 IRF-3: Interferon-regulatory factor 3; InterPro: IPR019471 This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein Back     alignment and domain information
>KOG2884|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
3gmj_D245 Crystal Structure Of Mad Mh2 Domain Length = 245 1e-79
1khu_A218 Smad1 Crystal Structure Reveals The Details Of Bmp 3e-73
3dit_A188 Crystal Structure Of Mad Mh2 Domain Length = 188 7e-73
1khx_A227 Crystal Structure Of A Phosphorylated Smad2 Length 2e-64
1dev_A196 Crystal Structure Of Smad2 Mh2 Domain Bound To The 4e-64
1mk2_A206 Smad3 Sbd Complex Length = 206 1e-62
1u7v_A198 Crystal Structure Of The Phosphorylated Smad2SMAD4 2e-61
1u7f_A198 Crystal Structure Of The Phosphorylated Smad3SMAD4 4e-60
1mjs_A197 Mh2 Domain Of Transcriptional Factor Smad3 Length = 6e-60
3kmp_A124 Crystal Structure Of Smad1-Mh1DNA COMPLEX Length = 4e-22
1mr1_A235 Crystal Structure Of A Smad4-Ski Complex Length = 2 3e-21
1dd1_A268 Crystal Structure Analysis Of The Smad4 Active Frag 3e-21
1g88_A268 S4afl3arg515 Mutant Length = 268 3e-21
1ygs_A234 Crystal Structure Of The Smad4 Tumor Suppressor C-T 3e-21
1u7f_B239 Crystal Structure Of The Phosphorylated Smad3SMAD4 4e-21
1u7v_B236 Crystal Structure Of The Phosphorylated Smad2SMAD4 4e-21
1mhd_A132 Crystal Structure Of A Smad Mh1 Domain Bound To Dna 3e-11
1ozj_A144 Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 3e-11
>pdb|3GMJ|D Chain D, Crystal Structure Of Mad Mh2 Domain Length = 245 Back     alignment and structure 
Iteration: 1

 Score =  292 bits (748), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/187 (77%), Positives = 156/187 (83%), Gaps = 2/187 (1%)
Query: 94  TPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEVF 153
           TPPPAYSP +D    S +P+    +      DV  V Y E  FWASIAYYELN RVGEVF
Sbjct: 10  TPPPAYSPSEDGN--SNNPNDGGQLLDAQMGDVAQVSYSEPAFWASIAYYELNCRVGEVF 67
Query: 154 HCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAEC 213
           HC ++SVIVDGFTNPSNN +R CLGQLSNVNRNSTIENTRRHIGKGVHLYYV GEVYAEC
Sbjct: 68  HCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAEC 127
Query: 214 LSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELT 273
           LSDSAIFVQSRNCN+ HGFH STVCKIP GCSLKIFNNQEFA+LLSQSVN+GFEAVYELT
Sbjct: 128 LSDSAIFVQSRNCNYQHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELT 187
Query: 274 KMCTISV 280
           KMCTI +
Sbjct: 188 KMCTIRM 194
>pdb|1KHU|A Chain A, Smad1 Crystal Structure Reveals The Details Of Bmp Signaling Pathway Length = 218 Back     alignment and structure
>pdb|3DIT|A Chain A, Crystal Structure Of Mad Mh2 Domain Length = 188 Back     alignment and structure
>pdb|1KHX|A Chain A, Crystal Structure Of A Phosphorylated Smad2 Length = 227 Back     alignment and structure
>pdb|1DEV|A Chain A, Crystal Structure Of Smad2 Mh2 Domain Bound To The Smad- Binding Domain Of Sara Length = 196 Back     alignment and structure
>pdb|1MK2|A Chain A, Smad3 Sbd Complex Length = 206 Back     alignment and structure
>pdb|1U7V|A Chain A, Crystal Structure Of The Phosphorylated Smad2SMAD4 Heterotrimeric Complex Length = 198 Back     alignment and structure
>pdb|1U7F|A Chain A, Crystal Structure Of The Phosphorylated Smad3SMAD4 Heterotrimeric Complex Length = 198 Back     alignment and structure
>pdb|1MJS|A Chain A, Mh2 Domain Of Transcriptional Factor Smad3 Length = 197 Back     alignment and structure
>pdb|3KMP|A Chain A, Crystal Structure Of Smad1-Mh1DNA COMPLEX Length = 124 Back     alignment and structure
>pdb|1MR1|A Chain A, Crystal Structure Of A Smad4-Ski Complex Length = 235 Back     alignment and structure
>pdb|1DD1|A Chain A, Crystal Structure Analysis Of The Smad4 Active Fragment Length = 268 Back     alignment and structure
>pdb|1G88|A Chain A, S4afl3arg515 Mutant Length = 268 Back     alignment and structure
>pdb|1YGS|A Chain A, Crystal Structure Of The Smad4 Tumor Suppressor C-Terminal Domain Length = 234 Back     alignment and structure
>pdb|1U7F|B Chain B, Crystal Structure Of The Phosphorylated Smad3SMAD4 Heterotrimeric Complex Length = 239 Back     alignment and structure
>pdb|1U7V|B Chain B, Crystal Structure Of The Phosphorylated Smad2SMAD4 Heterotrimeric Complex Length = 236 Back     alignment and structure
>pdb|1MHD|A Chain A, Crystal Structure Of A Smad Mh1 Domain Bound To Dna Length = 132 Back     alignment and structure
>pdb|1OZJ|A Chain A, Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 A Resolution Length = 144 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query291
3gmj_D245 Protein mothers against DPP; MH2,SMAD,MAD, cytopla 6e-78
1khx_A227 SMAD2; TGF-beta signaling, phosphorylation, recept 2e-71
1dd1_A268 SMAD4; B-sheet sandwich helix-turn-helix, signalin 1e-59
1ygs_A234 SMAD4; tumor suppressor C-terminal domain, TGF-bet 5e-56
3kmp_A124 SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH 6e-30
1ozj_A144 SMAD 3; MAD homology domain 1, DNA recognition, TG 1e-28
3qsv_A132 SMAD4, mothers against decapentaplegic homolog 4; 4e-25
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster} Length = 245 Back     alignment and structure
 Score =  236 bits (602), Expect = 6e-78
 Identities = 145/188 (77%), Positives = 156/188 (82%), Gaps = 2/188 (1%)

Query: 93  ETPPPAYSPPQDEKHGSQSPHSENAMDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEV 152
            TPPPAYSP +D    S +P+    +      DV  V Y E  FWASIAYYELN RVGEV
Sbjct: 9   GTPPPAYSPSED--GNSNNPNDGGQLLDAQMGDVAQVSYSEPAFWASIAYYELNCRVGEV 66

Query: 153 FHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAE 212
           FHC ++SVIVDGFTNPSNN +R CLGQLSNVNRNSTIENTRRHIGKGVHLYYV GEVYAE
Sbjct: 67  FHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAE 126

Query: 213 CLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYEL 272
           CLSDSAIFVQSRNCN+ HGFH STVCKIP GCSLKIFNNQEFA+LLSQSVN+GFEAVYEL
Sbjct: 127 CLSDSAIFVQSRNCNYQHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYEL 186

Query: 273 TKMCTISV 280
           TKMCTI +
Sbjct: 187 TKMCTIRM 194
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A Length = 227 Back     alignment and structure
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A Length = 268 Back     alignment and structure
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B* Length = 234 Back     alignment and structure
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} Length = 124 Back     alignment and structure
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A* Length = 144 Back     alignment and structure
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus} Length = 132 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
3gmj_D245 Protein mothers against DPP; MH2,SMAD,MAD, cytopla 100.0
1khx_A227 SMAD2; TGF-beta signaling, phosphorylation, recept 100.0
1ygs_A234 SMAD4; tumor suppressor C-terminal domain, TGF-bet 100.0
1dd1_A268 SMAD4; B-sheet sandwich helix-turn-helix, signalin 100.0
3kmp_A124 SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH 99.96
1ozj_A144 SMAD 3; MAD homology domain 1, DNA recognition, TG 99.95
3qsv_A132 SMAD4, mothers against decapentaplegic homolog 4; 99.95
3a77_A242 IRF-3, interferon regulatory factor 3; phosphoryla 97.6
3dsh_A246 IRF-5, interferon regulatory factor 5; phosphoacti 97.5
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster} Back     alignment and structure
Probab=100.00  E-value=3.2e-73  Score=518.96  Aligned_cols=195  Identities=73%  Similarity=1.156  Sum_probs=154.0

Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCceEEEEEEeecccccceeeeecCeEEEcCccCCCC
Q psy11627         92 IETPPPAYSPPQDEKHGSQSPHSEN-AMDTGISSDVTPVPYQEQPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSN  170 (291)
Q Consensus        92 ~~sppp~y~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~v~~~e~~~WCsIaYyEl~~RVGe~F~a~~~sv~VDGf~dps~  170 (291)
                      ++||||+|++++.+++++.+++.++ |+   .+.++++|+|+||++||+|+|||+|+||||+|+|++++|+||||+||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~y~ep~~WcsIaYyEln~RVGe~F~a~~~sv~IDGf~dps~   84 (245)
T 3gmj_D            8 AGTPPPAYSPSEDGNSNNPNDGGQLLDA---QMGDVAQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSN   84 (245)
T ss_dssp             ------------------------------------------CCSCSEEEEEEETTEEEEEEEEECSSEEEEESSCCCCT
T ss_pred             CCCCCCCcCCCCcCcccCCCCCccccCC---CCCccccccccCCCceeEEEEeecCceeccceeecCCeEEEeCCcCCCC
Confidence            5799999999988776655544332 22   1358899999999999999999999999999999999999999999986


Q ss_pred             CCCceeeccccCCCCChhhHHhhhccCCceEEEEECCEEEEEeCCCceeeecCCCCCCCCCCCCcceeEcCCCceEEeee
Q psy11627        171 NLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFN  250 (291)
Q Consensus       171 ~~~RfcLg~lsnv~R~~~ve~tR~~IG~GV~L~~~~g~V~~~nlS~~~VFVqSp~ln~~~g~~~~tV~KI~pg~slKIFd  250 (291)
                      +++|||||+|+|+||++++++||+|||+||+|++++|+||++|+|+++||||||+||+.+|+|+++||||+|||++||||
T Consensus        85 ~~~RfcLg~lsNv~R~~~ve~tR~~IG~GV~L~~~~G~V~~~nlS~~~IFVqS~~~n~~~g~~~~tV~KI~pg~slKiFd  164 (245)
T 3gmj_D           85 NSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYQHGFHPSTVCKIPPGCSLKIFN  164 (245)
T ss_dssp             TTSEEEGGGCCCTTCCHHHHHHHHHHTTCEEEEEETTEEEEEECSSSCEEEEEHHHHHHTTCCTTCCEEECTTCEEEEEC
T ss_pred             CCCceeecCccCCCCcHHHHHHHHHHhcCeEEEEECCEEEEEecCCCcEEECCCcccccCCCCccceEEeCCCCeEEEeC
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhcCCccccccCCCceeEEEeeeccccc
Q psy11627        251 NQEFAELLSQSVNHGFEAVYELTKMCTISVRPFRRLVLA  289 (291)
Q Consensus       251 ~~~fa~~L~~~~~~g~~~v~~L~~~CtiRISFvKG~g~~  289 (291)
                      +++|+++|+|++++||++||+|++||+||||||||||+.
T Consensus       165 ~~~fa~~L~qs~~~g~~~v~~L~~~CtiRiSFvKGWG~~  203 (245)
T 3gmj_D          165 NQEFAQLLSQSVNNGFEAVYELTKMCTIRMSFVKGWGAE  203 (245)
T ss_dssp             HHHHHHHHHHTTTTCSHHHHHHGGGGEEEEEESSCCSTT
T ss_pred             HHHHHHHHHHHhhcCCchhhhhhhcceeeeEeecCcCcc
Confidence            999999999999999999999999999999999999974
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A Back     alignment and structure
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B* Back     alignment and structure
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A Back     alignment and structure
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1 Back     alignment and structure
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A* Back     alignment and structure
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus} Back     alignment and structure
>3a77_A IRF-3, interferon regulatory factor 3; phosphorylated protein, activator, antiviral defense, DNA-BI HOST-virus interaction, nucleus, phosphoprotein; HET: SEP; 1.80A {Homo sapiens} PDB: 1j2f_A 1qwt_A 1zoq_A Back     alignment and structure
>3dsh_A IRF-5, interferon regulatory factor 5; phosphoactivation induced dimerization, DNA-binding, nucleus transcription, transcription regulation; 2.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 291
d1mjsa_190 b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapien 7e-75
d1ygsa_225 b.26.1.1 (A:) Smad4 tumor suppressor C-terminal do 3e-61
d1ozja_126 d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapien 4e-31
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: SMAD domain
domain: Smad3 MH2 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  225 bits (575), Expect = 7e-75
 Identities = 106/146 (72%), Positives = 123/146 (84%), Gaps = 1/146 (0%)

Query: 135 PFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRR 194
            FW SI+YYELN RVGE FH    S+ VDGFT+PSN+  RFCLG LSNVNRN+ +E TRR
Sbjct: 2   AFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNS-ERFCLGLLSNVNRNAAVELTRR 60

Query: 195 HIGKGVHLYYVGGEVYAECLSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEF 254
           HIG+GV LYY+GGEV+AECLSDSAIFVQS NCN  +G+H +TVCKIP GC+LKIFNNQEF
Sbjct: 61  HIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEF 120

Query: 255 AELLSQSVNHGFEAVYELTKMCTISV 280
           A LL+QSVN GFEAVY+LT+MCTI +
Sbjct: 121 AALLAQSVNQGFEAVYQLTRMCTIRM 146
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query291
d1mjsa_190 Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 960 100.0
d1ygsa_225 Smad4 tumor suppressor C-terminal domain {Human (H 100.0
d1ozja_126 SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606 99.95
d1qwta_239 Interferon regulatory factor 3 (IRF3), transactiva 97.86
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: SMAD domain
domain: Smad3 MH2 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-65  Score=448.04  Aligned_cols=155  Identities=68%  Similarity=1.166  Sum_probs=144.7

Q ss_pred             CCceEEEEEEeecccccceeeeecCeEEEcCccCCCCCCCceeeccccCCCCChhhHHhhhccCCceEEEEECCEEEEEe
Q psy11627        134 QPFWASIAYYELNSRVGEVFHCQSHSVIVDGFTNPSNNLNRFCLGQLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAEC  213 (291)
Q Consensus       134 ~~~WCsIaYyEl~~RVGe~F~a~~~sv~VDGf~dps~~~~RfcLg~lsnv~R~~~ve~tR~~IG~GV~L~~~~g~V~~~n  213 (291)
                      |++||+|+|||+|+||||+|+|++|+|+||||+||+ +++|||||+|+|++|++++++||+|||+||+|++++|+||++|
T Consensus         1 p~~Wc~IaY~El~~rVGe~f~~~~p~v~VDGf~d~~-~~~rfcLg~l~n~~R~~~v~~~R~~IG~GV~L~~~~g~Vw~~~   79 (190)
T d1mjsa_           1 PAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPS-NSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIGGEVFAEC   79 (190)
T ss_dssp             CCSSEEEEEEETTEECSCCEEECSSEEEEECCSSCC-BTTEEECSSCCCTTCCHHHHHHHHHHTTCEEEEEETTEEEEEE
T ss_pred             CcceeEEEEEecCCeeEccEEccCCEEEEecCcCCC-CCCeeEecccCCCCCcHHHHHHhhccCcEEEEEEECCeEEEEE
Confidence            689999999999999999999999999999999996 6789999999999999999999999999999999999999999


Q ss_pred             CCCceeeecCCCCCCCCCCCCcceeEcCCCceEEeeehHHHHHHHHHhhhcCCccccccCCCceeEEEeeeccccc
Q psy11627        214 LSDSAIFVQSRNCNHHHGFHQSTVCKIPAGCSLKIFNNQEFAELLSQSVNHGFEAVYELTKMCTISVRPFRRLVLA  289 (291)
Q Consensus       214 lS~~~VFVqSp~ln~~~g~~~~tV~KI~pg~slKIFd~~~fa~~L~~~~~~g~~~v~~L~~~CtiRISFvKG~g~~  289 (291)
                      +|++|||||||+||.++++++++|||||||++|||||+++|+++|+++.+++++++++|++||+||||||||||..
T Consensus        80 lS~~~VFVqS~~l~~~~~~~~~~V~Kv~pg~~lKvFd~~~f~~~l~~~~~~~~~~~~~l~~~c~iRISFvKGWG~~  155 (190)
T d1mjsa_          80 LSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAE  155 (190)
T ss_dssp             CSSSCEEEECHHHHTC-----CCCEEECTTCEEEEECHHHHHHHHHHHHHHCHHHHHGGGGGGEEEEEESCCC---
T ss_pred             ecCCCEEEcCCCCCCcCCCCCCceEEeCCCCeEEeeChHHHHHHHHHHhccCCCCccccccceEEEEEEEcccCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999963
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3), transactivation domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure