Psyllid ID: psy11692

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELLATGNTFDMNTYQKN
ccEEccEEcccEEEEEEcccccccccccccccccEEEEEEcEEEEEccccccccccEEEEEEEEEccccEEHHHHHHHHHHHHHHHEEEEcccccccEEEEHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEcccccccccccccc
cccccEEEcccEEEEEEEcccccccHHHccccccEEEEccccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEcccccccccccHHccc
mkfgswtfngdqvslalyndknfvdlsdywksgtwdiievpaylnvydehqptetdiTFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYlpaeagekVTLGISILLSLVVFLLLVskilpptslvLPLIAKYLLFTFIMNTVKSACLHYFLLYELLAtgntfdmntyqkn
mkfgswtfnGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELLATGNTFDMNTYQKN
MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTlgisillslvvflllvskilPPTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELLATGNTFDMNTYQKN
****SWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELLATGNTFDM******
MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELLATGNTFD*NTYQ**
MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELLATGNTFDMNTYQKN
*KFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELLAT************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
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MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELLATGNTFDMNTYQKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query171 2.2.26 [Sep-21-2011]
P04755 521 Acetylcholine receptor su yes N/A 0.836 0.274 0.958 4e-66
P25162 519 Acetylcholine receptor su no N/A 0.807 0.265 0.562 2e-36
P48181 493 Acetylcholine receptor su yes N/A 0.771 0.267 0.561 9e-36
P18845 512 Neuronal acetylcholine re N/A N/A 0.824 0.275 0.537 1e-35
P17644 576 Acetylcholine receptor su no N/A 0.807 0.239 0.532 2e-35
P04757 499 Neuronal acetylcholine re yes N/A 0.976 0.334 0.494 2e-35
Q8R4G9 499 Neuronal acetylcholine re yes N/A 0.976 0.334 0.494 2e-35
P09481 496 Neuronal acetylcholine re yes N/A 0.824 0.284 0.531 4e-35
P23414 557 Acetylcholine receptor su N/A N/A 0.807 0.247 0.549 4e-35
P32297 505 Neuronal acetylcholine re yes N/A 0.976 0.330 0.488 5e-35
>sp|P04755|ACH3_DROME Acetylcholine receptor subunit beta-like 1 OS=Drosophila melanogaster GN=nAcRbeta-64B PE=2 SV=1 Back     alignment and function desciption
 Score =  250 bits (638), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 139/145 (95%), Positives = 141/145 (97%), Gaps = 2/145 (1%)

Query: 1   MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVY--DEHQPTETDIT 58
           MKFGSWTFNGDQVSLALYN+KNFVDLSDYWKSGTWDIIEVPAYLNVY  D + PTETDIT
Sbjct: 168 MKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIIEVPAYLNVYEGDSNHPTETDIT 227

Query: 59  FYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSK 118
           FYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSK
Sbjct: 228 FYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSK 287

Query: 119 ILPPTSLVLPLIAKYLLFTFIMNTV 143
           ILPPTSLVLPLIAKYLLFTFIMNTV
Sbjct: 288 ILPPTSLVLPLIAKYLLFTFIMNTV 312
After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
Drosophila melanogaster (taxid: 7227)
>sp|P25162|ACH4_DROME Acetylcholine receptor subunit beta-like 2 OS=Drosophila melanogaster GN=nAcRbeta-96A PE=2 SV=3 Back     alignment and function description
>sp|P48181|ACH2_CAEEL Acetylcholine receptor subunit beta-type unc-29 OS=Caenorhabditis elegans GN=unc-29 PE=2 SV=2 Back     alignment and function description
>sp|P18845|ACHA3_CARAU Neuronal acetylcholine receptor subunit alpha-3 OS=Carassius auratus GN=chrna3 PE=2 SV=1 Back     alignment and function description
>sp|P17644|ACH2_DROME Acetylcholine receptor subunit alpha-like 2 OS=Drosophila melanogaster GN=nAcRalpha-96Ab PE=2 SV=1 Back     alignment and function description
>sp|P04757|ACHA3_RAT Neuronal acetylcholine receptor subunit alpha-3 OS=Rattus norvegicus GN=Chrna3 PE=2 SV=1 Back     alignment and function description
>sp|Q8R4G9|ACHA3_MOUSE Neuronal acetylcholine receptor subunit alpha-3 OS=Mus musculus GN=Chrna3 PE=2 SV=1 Back     alignment and function description
>sp|P09481|ACHA3_CHICK Neuronal acetylcholine receptor subunit alpha-3 OS=Gallus gallus GN=CHRNA3 PE=2 SV=2 Back     alignment and function description
>sp|P23414|ACH1_SCHGR Acetylcholine receptor subunit alpha-L1 OS=Schistocerca gregaria PE=2 SV=1 Back     alignment and function description
>sp|P32297|ACHA3_HUMAN Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens GN=CHRNA3 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query171
210077497 517 nicotinic acetylcholine receptor beta 1 0.836 0.276 0.965 1e-65
357628226 579 nicotinic acetylcholine receptor subunit 0.836 0.246 0.958 2e-65
290560948 533 nicotinic acetylcholine receptor subunit 0.836 0.268 0.958 3e-65
242117936 509 nicotinic acetylcholine receptor beta 1 0.836 0.280 0.958 3e-65
158186762 516 nicotinic acetylcholine receptor subunit 0.836 0.277 0.958 3e-65
158262721 512 nicotinic acetylcholine receptor beta 1 0.836 0.279 0.958 4e-65
4191498 517 nicotinic acetylcholine receptor beta-1 0.836 0.276 0.958 4e-65
377655316 414 nicotinic acetylcholine receptor beta 1 0.836 0.345 0.958 4e-65
195125177 521 GI12728 [Drosophila mojavensis] gi|19391 0.836 0.274 0.958 1e-64
194866521 521 GG15229 [Drosophila erecta] gi|190653683 0.836 0.274 0.958 1e-64
>gi|210077497|gb|ACJ07013.1| nicotinic acetylcholine receptor beta 1 subunit [Nilaparvata lugens] Back     alignment and taxonomy information
 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 138/143 (96%), Positives = 142/143 (99%)

Query: 1   MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTETDITFY 60
           MKFGSWTFNGDQVSLALYN+KNFVDLSDYWKSGTWDIIEVPAYLN+Y+ +QPTETDITFY
Sbjct: 168 MKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIIEVPAYLNIYEGNQPTETDITFY 227

Query: 61  IIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKIL 120
           IIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKIL
Sbjct: 228 IIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKIL 287

Query: 121 PPTSLVLPLIAKYLLFTFIMNTV 143
           PPTSLVLPLIAKYLLFTFIMNTV
Sbjct: 288 PPTSLVLPLIAKYLLFTFIMNTV 310

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|357628226|gb|EHJ77616.1| nicotinic acetylcholine receptor subunit beta 1 isoform 1 [Danaus plexippus] Back     alignment and taxonomy information
>gi|290560948|ref|NP_001166819.1| nicotinic acetylcholine receptor subunit beta 1 isoform 1 precursor [Bombyx mori] gi|157783842|gb|ABV72692.1| nicotinic acetylcholine receptor beta 1 subunit [Bombyx mori] Back     alignment and taxonomy information
>gi|242117936|ref|NP_001156000.1| nicotinic acetylcholine receptor beta 1 subunit isoform 2 [Tribolium castaneum] gi|227439277|gb|ACP31316.1| nicotinic acetylcholine receptor B1 subunit [Tribolium castaneum] Back     alignment and taxonomy information
>gi|158186762|ref|NP_001103398.1| nicotinic acetylcholine receptor subunit beta 1 isoform 2 precursor [Bombyx mori] gi|157367279|gb|ABV45508.1| nicotinic acetylcholine receptor subunit beta 1 [Bombyx mori] Back     alignment and taxonomy information
>gi|158262721|ref|NP_001103418.1| nicotinic acetylcholine receptor beta 1 subunit isoform 1 precursor [Tribolium castaneum] gi|154810995|gb|ABS86916.1| nicotinic acetylcholine receptor subunit beta1 [Tribolium castaneum] gi|270015608|gb|EFA12056.1| nicotinic acetylcholine receptor subunit beta1 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|4191498|gb|AAD09810.1| nicotinic acetylcholine receptor beta-1 subunit [Heliothis virescens] Back     alignment and taxonomy information
>gi|377655316|gb|AFB73849.1| nicotinic acetylcholine receptor beta 1 subunit, partial [Periplaneta americana] Back     alignment and taxonomy information
>gi|195125177|ref|XP_002007058.1| GI12728 [Drosophila mojavensis] gi|193918667|gb|EDW17534.1| GI12728 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|194866521|ref|XP_001971900.1| GG15229 [Drosophila erecta] gi|190653683|gb|EDV50926.1| GG15229 [Drosophila erecta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query171
FB|FBgn0000038 521 nAcRbeta-64B "nicotinic Acetyl 0.836 0.274 0.820 3.2e-58
UNIPROTKB|F1P8T6 438 CHRNA3 "Uncharacterized protei 0.976 0.381 0.430 2.1e-29
UNIPROTKB|F1M4L2 428 Chrna3 "Neuronal acetylcholine 0.976 0.390 0.430 2.1e-29
ZFIN|ZDB-GENE-090312-91 512 chrna6 "cholinergic receptor, 0.964 0.322 0.435 2.6e-29
UNIPROTKB|F1NHP4388 CHRNA2 "Neuronal acetylcholine 0.877 0.386 0.470 2.7e-29
UNIPROTKB|P18845 512 chrna3 "Neuronal acetylcholine 0.964 0.322 0.429 3.4e-29
MGI|MGI:87887 499 Chrna3 "cholinergic receptor, 0.976 0.334 0.430 3.6e-29
RGD|2345 499 Chrna3 "cholinergic receptor, 0.976 0.334 0.430 3.6e-29
UNIPROTKB|F1M7K6 503 Chrna3 "Neuronal acetylcholine 0.976 0.332 0.430 3.8e-29
UNIPROTKB|F1RKU8 505 CHRNA3 "Uncharacterized protei 0.976 0.330 0.430 4e-29
FB|FBgn0000038 nAcRbeta-64B "nicotinic Acetylcholine Receptor beta 64B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 119/145 (82%), Positives = 121/145 (83%)

Query:     1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVY--DEHQPTETDIT 58
             MKFGSWTFNGDQVSLALYN+KNFVDLSDYWKSGTWDIIEVPAYLNVY  D + PTETDIT
Sbjct:   168 MKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIIEVPAYLNVYEGDSNHPTETDIT 227

Query:    59 FYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXXXXXXXX 118
             FYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVT                  
Sbjct:   228 FYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSK 287

Query:   119 XXPPTSLVLPLIAKYLLFTFIMNTV 143
               PPTSLVLPLIAKYLLFTFIMNTV
Sbjct:   288 ILPPTSLVLPLIAKYLLFTFIMNTV 312
GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS
GO:0005892 "acetylcholine-gated channel complex" evidence=ISS
GO:0005887 "integral to plasma membrane" evidence=NAS
GO:0006811 "ion transport" evidence=IEA
GO:0045211 "postsynaptic membrane" evidence=IDA
UNIPROTKB|F1P8T6 CHRNA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1M4L2 Chrna3 "Neuronal acetylcholine receptor subunit alpha-3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090312-91 chrna6 "cholinergic receptor, nicotinic, alpha 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NHP4 CHRNA2 "Neuronal acetylcholine receptor subunit alpha-2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P18845 chrna3 "Neuronal acetylcholine receptor subunit alpha-3" [Carassius auratus (taxid:7957)] Back     alignment and assigned GO terms
MGI|MGI:87887 Chrna3 "cholinergic receptor, nicotinic, alpha polypeptide 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2345 Chrna3 "cholinergic receptor, nicotinic, alpha 3 (neuronal)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M7K6 Chrna3 "Neuronal acetylcholine receptor subunit alpha-3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RKU8 CHRNA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P09481ACHA3_CHICKNo assigned EC number0.53100.82450.2842yesN/A
P04755ACH3_DROMENo assigned EC number0.95860.83620.2744yesN/A
P48181ACH2_CAEELNo assigned EC number0.56110.77190.2677yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
pfam02932 228 pfam02932, Neur_chan_memb, Neurotransmitter-gated 1e-30
TIGR00860 459 TIGR00860, LIC, Cation transporter family protein 5e-30
pfam02931215 pfam02931, Neur_chan_LBD, Neurotransmitter-gated i 1e-13
>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region Back     alignment and domain information 
 Score =  110 bits (278), Expect = 1e-30
 Identities = 45/70 (64%), Positives = 56/70 (80%), Gaps = 1/70 (1%)

Query: 74  LILPTVLISFLCVLVFYLPAEAG-EKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAK 132
           LI+P VLISFL  LVF+LPA+AG EKVTLGI+ LL++ VFLLL+ + LP TS V+PLI K
Sbjct: 1   LIIPCVLISFLSWLVFWLPADAGPEKVTLGITTLLTMTVFLLLIRESLPKTSYVVPLIGK 60

Query: 133 YLLFTFIMNT 142
           YL+FT  + T
Sbjct: 61  YLVFTMFVFT 70

This family includes the four transmembrane helices that form the ion channel. Length = 228
>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein Back     alignment and domain information
>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 171
KOG3646|consensus 486 100.0
TIGR00860 459 LIC Cation transporter family protein. selective w 100.0
KOG3643|consensus 459 100.0
KOG3645|consensus 449 100.0
KOG3644|consensus 457 99.98
KOG3642|consensus 466 99.97
PF02932 237 Neur_chan_memb: Neurotransmitter-gated ion-channel 99.88
PF02931217 Neur_chan_LBD: Neurotransmitter-gated ion-channel 98.71
>KOG3646|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-41  Score=278.82  Aligned_cols=169  Identities=38%  Similarity=0.707  Sum_probs=158.5

Q ss_pred             CeEecceecCCeEEEEEcCCCcccccccccccccEEEeEeeeEEEE--ecCCCCCeeEEEEEEEEEeecceeEEEEehhh
Q psy11692          1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNV--YDEHQPTETDITFYIIIRRKTLFYTVNLILPT   78 (171)
Q Consensus         1 L~f~Sw~y~~~~v~l~~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~--~~~~~~~y~~i~~~~~l~R~~~~y~~~~~iP~   78 (171)
                      ||||||+|++..++++.......+|++.|++||||++.+.+..+..  |+||+++|++++|++++|||..||.+|+++||
T Consensus       167 mKFGSWTY~G~~lDL~~~~~~g~~Dls~yi~NGEW~Ll~~pakr~~~~y~cC~epY~dv~F~l~irRRTLyYgfNlIiP~  246 (486)
T KOG3646|consen  167 LKFGSWTYAGILLDLRIDDEDGGIDLSTYIPNGEWDLLGTPAKREEKTYDCCPEPYPDVTFYLHIRRRTLYYGFNLIIPS  246 (486)
T ss_pred             EEeeeEEEcceeeeeeeccccCCcchhhcccCCceeeccccccceeeecccCCCCcceeEEEEEEEehhhHHHHHHHHHH
Confidence            6999999999999999866555678999999999999999987654  67999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCCceEEehhHHHHHHHHHHHHhhhcCCCCccCcCchhhHHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy11692         79 VLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELLA  158 (171)
Q Consensus        79 ~li~~l~~~~F~lp~~~~~r~~l~~t~lL~~~~~l~~v~~~lP~~s~~~p~i~~y~~~~~~~v~~s~~~~~~~~~~~~~~  158 (171)
                      +++.++++.+|-+|+|+|||+++++|++|+..+|+..+++..|++|+++|++|.||.+||+++++|+ ..+++++|+|+|
T Consensus       247 lLIs~m~lLgFtlppD~gEKitL~iTilLsvc~FL~mvse~~PpTSeaVPllg~fFsc~m~iv~~Sv-vfTv~vLn~h~R  325 (486)
T KOG3646|consen  247 LLISLMSLLGFTLPPDAGEKITLQITILLSVCFFLTMVSEMTPPTSEAVPLLGAFFSCCMFIVAASV-VFTVIVLNLHHR  325 (486)
T ss_pred             HHHHHHHHhccccCccccceeeeeeehHHHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHHHhhh-eeEEEEEeeecc
Confidence            9999999999999999999999999999999999999999999999999999999999999999996 467889999999


Q ss_pred             cCCCCCCCcccc
Q psy11692        159 TGNTFDMNTYQK  170 (171)
Q Consensus       159 ~~~~~~~p~w~~  170 (171)
                      +..+.+|+.|.+
T Consensus       326 ~p~~h~m~p~~r  337 (486)
T KOG3646|consen  326 TPETHEMSPWTR  337 (486)
T ss_pred             CccccccCHHHH
Confidence            999999888876

>TIGR00860 LIC Cation transporter family protein Back     alignment and domain information
>KOG3643|consensus Back     alignment and domain information
>KOG3645|consensus Back     alignment and domain information
>KOG3644|consensus Back     alignment and domain information
>KOG3642|consensus Back     alignment and domain information
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
2bg9_C369 Refined Structure Of The Nicotinic Acetylcholine Re 1e-24
4aq5_C 522 Gating Movement In Acetylcholine Receptor Analysed 3e-24
4aq5_A 461 Gating Movement In Acetylcholine Receptor Analysed 1e-19
2bg9_A370 Refined Structure Of The Nicotinic Acetylcholine Re 2e-19
2bg9_B370 Refined Structure Of The Nicotinic Acetylcholine Re 4e-18
2bg9_E370 Refined Structure Of The Nicotinic Acetylcholine Re 1e-17
4aq5_B 493 Gating Movement In Acetylcholine Receptor Analysed 3e-17
4aq5_E 488 Gating Movement In Acetylcholine Receptor Analysed 4e-17
2ksr_A164 Nmr Structures Of Tm Domain Of The N-Acetylcholine 4e-15
1oed_C 260 Structure Of Acetylcholine Receptor Pore From Elect 3e-11
2lly_A137 Nmr Structures Of The Transmembrane Domains Of The 4e-11
2lm2_A137 Nmr Structures Of The Transmembrane Domains Of The 6e-11
1oed_A 227 Structure Of Acetylcholine Receptor Pore From Elect 1e-09
1oed_B 250 Structure Of Acetylcholine Receptor Pore From Elect 6e-09
1oed_E 260 Structure Of Acetylcholine Receptor Pore From Elect 1e-08
2k58_B35 Nmr Structures Of The First Transmembrane Domain Of 4e-08
2lkg_A140 Wsa Major Conformation Length = 140 1e-07
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 369 Back     alignment and structure 
Iteration: 1

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 80/139 (57%), Gaps = 8/139 (5%)
Query: 1   MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVYDEHQPTET---DI 57
           +KF +  +N +++S+ L      +D   + ++G W+II  PA  N+Y +  P  T   D+
Sbjct: 146 LKFTALNYNANEISMDL-----IIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDV 200
Query: 58  TFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTXXXXXXXXXXXXXXXXX 117
           TFY+IIRRK LFY +N I P VLISFL  L FYLPAE+GEK++                 
Sbjct: 201 TFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTS 260
Query: 118 XXXPPTSLVLPLIAKYLLF 136
              P T+L +PLI KYL+F
Sbjct: 261 QRLPETALAVPLIGKYLMF 279
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522 Back     alignment and structure
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461 Back     alignment and structure
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370 Back     alignment and structure
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493 Back     alignment and structure
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 488 Back     alignment and structure
>pdb|2KSR|A Chain A, Nmr Structures Of Tm Domain Of The N-Acetylcholine Receptor B2 Subunit Length = 164 Back     alignment and structure
>pdb|1OED|C Chain C, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260 Back     alignment and structure
>pdb|2LLY|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Nachr A4 Subunit Length = 137 Back     alignment and structure
>pdb|2LM2|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Achr B2 Subunit Length = 137 Back     alignment and structure
>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 227 Back     alignment and structure
>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 250 Back     alignment and structure
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260 Back     alignment and structure
>pdb|2K58|B Chain B, Nmr Structures Of The First Transmembrane Domain Of The Neuronal Acetylcholine Receptor Beta 2 Subunit Length = 35 Back     alignment and structure
>pdb|2LKG|A Chain A, Wsa Major Conformation Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
4aq5_A 461 Acetylcholine receptor subunit alpha; membrane pro 5e-55
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 9e-52
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 1e-50
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 3e-48
4aq5_B 493 Acetylcholine receptor beta subunit; membrane prot 5e-48
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 2e-47
4aq5_C 522 Acetylcholine receptor delta subunit; membrane pro 3e-47
4aq5_E 488 Acetylcholine receptor gamma subunit; membrane pro 6e-47
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 3e-46
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 6e-37
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 1e-35
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 1e-33
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 3e-31
1oed_C 260 Acetylcholine receptor protein, delta chain; ION c 4e-29
1oed_B 250 Acetylcholine receptor protein, beta chain; ION ch 2e-28
1oed_A 227 Acetylcholine receptor protein, alpha chain; ION c 5e-28
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 2e-27
1oed_E 260 Acetylcholine receptor protein, gamma chain; ION c 1e-26
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 1e-22
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 4e-22
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 4e-20
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 6e-18
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 7e-18
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 1e-16
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 1e-12
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461 Back     alignment and structure
 Score =  179 bits (454), Expect = 5e-55
 Identities = 63/146 (43%), Positives = 96/146 (65%), Gaps = 5/146 (3%)

Query: 1   MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNVY---DEHQPTETDI 57
           MK G WT++G +VS++  +D+   DLS + +SG W + +   + +             DI
Sbjct: 168 MKLGIWTYDGTKVSISPESDR--PDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDI 225

Query: 58  TFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVS 117
           T++ I++R  L++ VN+I+P +L SFL VLVFYLP ++GEK+TL IS+LLSL VFLL++ 
Sbjct: 226 TYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIV 285

Query: 118 KILPPTSLVLPLIAKYLLFTFIMNTV 143
           +++P TS  +PLI KY+LFT I    
Sbjct: 286 ELIPSTSSAVPLIGKYMLFTMIFVIS 311
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493 Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369 Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522 Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488 Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321 Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322 Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164 Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137 Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140 Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260 Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250 Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227 Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347 Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260 Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230 Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228 Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211 Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212 Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203 Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204 Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query171
4aq5_A 461 Acetylcholine receptor subunit alpha; membrane pro 100.0
4aq5_C 522 Acetylcholine receptor delta subunit; membrane pro 100.0
4aq5_E 488 Acetylcholine receptor gamma subunit; membrane pro 100.0
4aq5_B 493 Acetylcholine receptor beta subunit; membrane prot 100.0
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 100.0
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 100.0
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 100.0
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 100.0
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 100.0
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 100.0
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 100.0
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 99.97
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 99.96
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 99.95
1oed_A 227 Acetylcholine receptor protein, alpha chain; ION c 99.93
1oed_B 250 Acetylcholine receptor protein, beta chain; ION ch 99.92
1oed_C 260 Acetylcholine receptor protein, delta chain; ION c 99.92
1oed_E 260 Acetylcholine receptor protein, gamma chain; ION c 99.92
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 99.58
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 99.52
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 99.49
1vry_A76 Glycine receptor alpha-1 chain; second transmembra 99.48
4aoe_A205 Acetylcholine-binding protein type 2; ligand gated 99.43
4aod_A205 Acetylcholine-binding protein type 1; ligand gated 99.42
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 99.4
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 99.34
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 99.33
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 99.29
1mot_A28 Glycine receptor alpha-1 chain; second transmembra 95.03
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Back     alignment and structure
Probab=100.00  E-value=4.3e-40  Score=277.70  Aligned_cols=167  Identities=39%  Similarity=0.704  Sum_probs=146.3

Q ss_pred             CeEecceecCCeEEEEEcCCCcccccccccccccEEEeEeeeEEEE--ecCCCC-CeeEEEEEEEEEeecceeEEEEehh
Q psy11692          1 MKFGSWTFNGDQVSLALYNDKNFVDLSDYWKSGTWDIIEVPAYLNV--YDEHQP-TETDITFYIIIRRKTLFYTVNLILP   77 (171)
Q Consensus         1 L~f~Sw~y~~~~v~l~~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~--~~~~~~-~y~~i~~~~~l~R~~~~y~~~~~iP   77 (171)
                      |+||||+|+++++++.+.+  +.++.++|..+|||++.+....++.  +.+|++ +|++++|++++|||++||++++++|
T Consensus       168 l~f~S~~y~~~~v~l~~~~--~~~~l~~~~~~~eW~l~~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP  245 (461)
T 4aq5_A          168 MKLGIWTYDGTKVSISPES--DRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIP  245 (461)
T ss_dssp             EEEEESSCCTTTEEEECCC--CCCSGGGCCTTCSSEEEEEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHH
T ss_pred             eEEeccccCCceEEEEecc--ccccHHhhhccCceEEeeeeeEEEEEeecCcCCCCcceEEEEEEEEecccceeeehhhh
Confidence            5899999999999999754  3577888999999999998876654  556777 9999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcccCCCCceEEehhHHHHHHHHHHHHhhhcCCCCccCcCchhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy11692         78 TVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVKSACLHYFLLYELL  157 (171)
Q Consensus        78 ~~li~~l~~~~F~lp~~~~~r~~l~~t~lL~~~~~l~~v~~~lP~~s~~~p~i~~y~~~~~~~v~~s~~~~~~~~~~~~~  157 (171)
                      |+++++++|++||+|++++||+++|+|++|++++++..+++.+|++|..+|+||+|+.+||+++++|++ ..++++|+|+
T Consensus       246 ~~liv~ls~lsF~Lp~~s~eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vplI~~y~~~~m~~v~~sll-~tv~Vl~l~~  324 (461)
T 4aq5_A          246 CLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSII-VTVVVINTHH  324 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHheEeccccccceeehhHHHHHHHHHHHHHHHhhcCcccCCcCHHHHHHHHHHHHHHHHHH-HHhhheeeec
Confidence            999999999999999999999999999999999999999999999996699999999999999999975 4556788899


Q ss_pred             ccCCCCCCCcccc
Q psy11692        158 ATGNTFDMNTYQK  170 (171)
Q Consensus       158 ~~~~~~~~p~w~~  170 (171)
                      |++...+||+|+|
T Consensus       325 r~~~~~~mp~w~r  337 (461)
T 4aq5_A          325 RSPSTHTMPQWVR  337 (461)
T ss_dssp             CCTTTC-------
T ss_pred             cCCCCCCCCHHHH
Confidence            9999999999987
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A* Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A* Back     alignment and structure
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata} Back     alignment and structure
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata} Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A* Back     alignment and structure
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 171
d1oedb_ 250 f.36.1.1 (B:) Acetylcholine receptor protein, beta 1e-27
d1oedc_ 260 f.36.1.1 (C:) Acetylcholine receptor protein, delt 3e-27
d1oede_ 260 f.36.1.1 (E:) Acetylcholine receptor protein, gamm 2e-25
d1oeda_ 227 f.36.1.1 (A:) Acetylcholine receptor protein, alph 4e-24
d1uw6a_208 b.96.1.1 (A:) Acetylcholine binding protein (ACHBP 3e-10
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score =  101 bits (253), Expect = 1e-27
 Identities = 40/83 (48%), Positives = 56/83 (67%)

Query: 68  LFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVL 127
           LFY V  I+P +LIS L +LVFYLP +AGEK++L IS LL++ VFLLL++  +P TSL +
Sbjct: 2   LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSV 61

Query: 128 PLIAKYLLFTFIMNTVKSACLHY 150
           P+I +YL+F  I+          
Sbjct: 62  PIIIRYLMFIMILVAFSVILSVV 84
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227 Back     information, alignment and structure
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query171
d1oedc_ 260 Acetylcholine receptor protein, delta chain {Marbl 99.93
d1oeda_ 227 Acetylcholine receptor protein, alpha chain {Marbl 99.93
d1oede_ 260 Acetylcholine receptor protein, gamma chain {Marbl 99.93
d1oedb_ 250 Acetylcholine receptor protein, beta chain {Marble 99.92
d1uw6a_208 Acetylcholine binding protein (ACHBP) {Great pond 99.39
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.93  E-value=2.1e-28  Score=189.93  Aligned_cols=103  Identities=48%  Similarity=0.693  Sum_probs=87.0

Q ss_pred             cceeEEEEehhhHHHHHHHHHhhcccCCCCceEEehhHHHHHHHHHHHHhhhcCCCCccCcCchhhHHHHHHHHHHHHHH
Q psy11692         67 TLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVKSA  146 (171)
Q Consensus        67 ~~~y~~~~~iP~~li~~l~~~~F~lp~~~~~r~~l~~t~lL~~~~~l~~v~~~lP~~s~~~p~i~~y~~~~~~~v~~s~~  146 (171)
                      |.||++++++||+++++++|++||+|+|+|||+++|+|++|++++|++.+++.+|++|+.+|+||+|+.+||+++++|++
T Consensus         1 pl~y~~n~~~P~~~~~~l~~~~f~lp~~~~~r~~l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~~   80 (260)
T d1oedc_           1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIV   80 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred             CceEEEhHHHHHHHHHHHHHHHeeeCCCCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999997899999999999999999976


Q ss_pred             HHHHhhhhhhhccCCCCCCCcccc
Q psy11692        147 CLHYFLLYELLATGNTFDMNTYQK  170 (171)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~p~w~~  170 (171)
                      + ..+++++|+|++...++|+|+|
T Consensus        81 ~-t~~Vl~~~~~~~~~~~~p~w~R  103 (260)
T d1oedc_          81 N-CGIVLNFHFRTPSTHVLSTRVK  103 (260)
T ss_dssp             H-HHHHHHHHHHC-----------
T ss_pred             H-HHhheeeeecccccCccchHHH
Confidence            4 5558888999988899999987
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Back     information, alignment and structure