Psyllid ID: psy11695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIVT
Secondary Structure (PSIPRED)
cEEEEEEEEEEEEEEEEEccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEEEEEEcccccccccccHHHHHHHHHHcHHHHEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MFMVASSVVSTILILNYhhrnadthemsPWIRLVFLQWmpcilrmsrpseedktSLTEATRKALKLKELELKERSSKSLLANvldidddfrhntlqssshtflrhddsgggtilhattscigphrELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLcsaphiivt
Flexible Loop (DISEMBL)
MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRmsrpseedktsltEATRKALKLkelelkersskSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIVT
Low Complexity Region (SEG)
MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATrkalklkelelkerssksllaNVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIVT
Disordered region (IsUnstruct)
***VASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILR***********************************LANVLDIDDDFR*********TFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV*
Disordered Region (DISOPRED)
MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSE************************************DDDFRHNT*********************ATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIVT
Disordered Region (DISEMBL)
MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSR***********ATRKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIVT
Disordered Region (DISPRO)
MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPS***********************************DIDDDFR*N***************************IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHI***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
P48180	498	Acetylcholine receptor su	yes	N/A	0.952	0.363	0.341	5e-26
A8WQK3	499	Acetylcholine receptor su	N/A	N/A	0.952	0.362	0.344	7e-26
P22770	502	Neuronal acetylcholine re	yes	N/A	0.984	0.372	0.333	1e-24
P54131	499	Neuronal acetylcholine re	yes	N/A	0.942	0.358	0.325	2e-23
Q05941	502	Neuronal acetylcholine re	yes	N/A	0.942	0.356	0.325	3e-23
P49582	502	Neuronal acetylcholine re	yes	N/A	0.942	0.356	0.325	3e-23
Q866A2	502	Neuronal acetylcholine re	yes	N/A	0.942	0.356	0.315	4e-23
Q494W8	412	CHRNA7-FAM7A fusion prote	no	N/A	0.963	0.444	0.316	6e-23
P36544	502	Neuronal acetylcholine re	no	N/A	0.963	0.364	0.316	7e-23
P09481	496	Neuronal acetylcholine re	no	N/A	0.910	0.348	0.270	1e-16

>sp|P48180|ACH1_CAEEL Acetylcholine receptor subunit alpha-type acr-16 OS=Caenorhabditis elegans GN=acr-16 PE=2 SV=1

 Score =  117 bits (293), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 112/205 (54%), Gaps = 24/205 (11%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +V +S V T+ +LN H+R  +TH+M PW R + L W+P ILRM RP      +LT A+
Sbjct: 300 MIVVTASTVFTVYVLNLHYRTPETHDMGPWTRNLLLYWIPWILRMKRPGH----NLTYAS 355

Query: 61  RKALKLKELELKERSSKSLLANVLD----------IDDDFRHNT--LQSSSHTFLRHDDS 108
             +L   +     R S+SL+ N+ D           D D R N   +  S    L    S
Sbjct: 356 LPSLFSTK---PNRHSESLIRNIKDNEHSLSRANSFDADCRLNQYIMTQSVSNGLTSLGS 412

Query: 109 GGGTILHATTSCIGPHRELTL-----ILKELRVITDKIQKEDEAAEITNDWKFAAMVVDR 163
              T++ +  +     ++ TL     I  EL+++T ++ + D+  +  N+WKFAAMVVDR
Sbjct: 413 IPSTMISSNGTTTDVSQQATLLILHRIYHELKIVTKRMIEGDKEEQACNNWKFAAMVVDR 472

Query: 164 MCLIIFTLFTILATVAVLCSAPHII 188
           +CL +FT+F I++T+ +  SAP+++
Sbjct: 473 LCLYVFTIFIIVSTIGIFWSAPYLV 497

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane (By similarity). A subunit of the levamisole-insensitive nicotinic receptor.
Caenorhabditis elegans (taxid: 6239)

>sp|A8WQK3|ACH1_CAEBR Acetylcholine receptor subunit alpha-type acr-16 OS=Caenorhabditis briggsae GN=acr-16 PE=3 SV=2

 Score =  117 bits (292), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 25/206 (12%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +V +S V T+ +LN H+R  +TH+M PW R + L W+P ILRM RP      +LT A+
Sbjct: 300 MIVVTASTVFTVYVLNLHYRTPETHDMGPWTRNLLLYWIPWILRMKRPGH----NLTYAS 355

Query: 61  RKALKLKELELKERSSKSLLANVLD----------IDDDFRHNT--LQSSSHTFLRHDDS 108
             +L   +     R S+SL+ N+ D           D D R N   +  S    L    S
Sbjct: 356 LPSLFASK---PNRHSESLIRNIKDNEHSLSRANSFDADCRLNQYIMTQSVSNGLTSMGS 412

Query: 109 GGGTILHATTSCIGP-HRELTL-----ILKELRVITDKIQKEDEAAEITNDWKFAAMVVD 162
              T++ +T   +    ++ TL     I  EL+++T ++ + D+  + +N+WKFAAMVVD
Sbjct: 413 IPSTMISSTNGALTDVSQQATLLILHRIYHELKIVTKRMIEGDKEEQASNNWKFAAMVVD 472

Query: 163 RMCLIIFTLFTILATVAVLCSAPHII 188
           R+CL +FT+F I +T+ +  SAP+++
Sbjct: 473 RLCLYVFTIFIIASTIGIFWSAPYLV 498

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. A subunit of the levamisole-insensitive nicotinic receptor.

Caenorhabditis briggsae (taxid: 6238)

>sp|P22770|ACHA7_CHICK Neuronal acetylcholine receptor subunit alpha-7 OS=Gallus gallus GN=CHRNA7 PE=1 SV=1

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 8/195 (4%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +V  SVV T+++L YHH + D  +M  W R++ L W    LRM RP E+      +  
Sbjct: 301 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRPACQHK 360

Query: 61  RKALKLKELELKERSSKSLL-ANVLDIDD---DFRHNTLQSSSHTF---LRHDDSGGGTI 113
           ++   L  +E+   S +     N+L I     D  H T  + S      +    +    +
Sbjct: 361 QRRCSLSSMEMNTVSGQQCSNGNMLYIGFRGLDGVHCTPTTDSGVICGRMTCSPTEEENL 420

Query: 114 LHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFT 173
           LH+     G   +L  IL+E+R I ++ + +DE   I N+WKFAA VVDR+CL+ F++FT
Sbjct: 421 LHSGHPSEG-DPDLAKILEEVRYIANRFRDQDEEEAICNEWKFAASVVDRLCLMAFSVFT 479

Query: 174 ILATVAVLCSAPHII 188
           I+ T+ +L SAP+ +
Sbjct: 480 IICTIGILMSAPNFV 494

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Gallus gallus (taxid: 9031)

>sp|P54131|ACHA7_BOVIN Neuronal acetylcholine receptor subunit alpha-7 OS=Bos taurus GN=CHRNA7 PE=2 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 101/203 (49%), Gaps = 24/203 (11%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +V  SVV T+++L YHH + D  +M  W R+V L W    LRM RP E+      +  
Sbjct: 298 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVVLLNWCAWFLRMKRPGEDKVRPACQHN 357

Query: 61  RKALKLKELELKERSSKSLL-ANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTS 119
            +   L  +E+   +       N+L I   FR       + T     DSG   ++    +
Sbjct: 358 ERRCSLASVEMSAVAGPPATNGNLLYI--GFRGLDTMHCAPT----PDSG---VVCGRVA 408

Query: 120 CIGPHRE--------------LTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMC 165
           C   H E              L  IL+E+R I  + + +DE+  + ++WKFAA VVDR+C
Sbjct: 409 CSPTHDEHLLHAGQPSEGDPDLAKILEEVRYIAHRFRCQDESEAVCSEWKFAACVVDRLC 468

Query: 166 LIIFTLFTILATVAVLCSAPHII 188
           L+ F++FTIL T+ +L SAP+ +
Sbjct: 469 LMAFSVFTILCTIGILMSAPNFV 491

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Bos taurus (taxid: 9913)

>sp|Q05941|ACHA7_RAT Neuronal acetylcholine receptor subunit alpha-7 OS=Rattus norvegicus GN=Chrna7 PE=1 SV=2

 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 24/203 (11%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +V  SVV T+++L YHH + D  +M  W R++ L W    LRM RP E+      +  
Sbjct: 301 MIIVGLSVVVTVIVLRYHHHDPDGGKMPKWTRIILLNWCAWFLRMKRPGEDKVRPACQHK 360

Query: 61  RKALKLKELELKERSSKSLL-ANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTS 119
            +   L  +EL   +       N+L I   FR       + T     DSG   ++    +
Sbjct: 361 PRRCSLASVELSAGAGPPTSNGNLLYIG--FRGLEGMHCAPT----PDSG---VVCGRLA 411

Query: 120 CIGPHRE--------------LTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMC 165
           C   H E              L  IL+E+R I ++ + +DE+  I ++WKFAA VVDR+C
Sbjct: 412 CSPTHDEHLMHGAHPSDGDPDLAKILEEVRYIANRFRCQDESEVICSEWKFAACVVDRLC 471

Query: 166 LIIFTLFTILATVAVLCSAPHII 188
           L+ F++FTI+ T+ +L SAP+ +
Sbjct: 472 LMAFSVFTIICTIGILMSAPNFV 494

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Rattus norvegicus (taxid: 10116)

>sp|P49582|ACHA7_MOUSE Neuronal acetylcholine receptor subunit alpha-7 OS=Mus musculus GN=Chrna7 PE=2 SV=1

 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 24/203 (11%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +V  SVV T+++L YHH + D  +M  W R++ L W    LRM RP E+      +  
Sbjct: 301 MIIVGLSVVVTVIVLRYHHHDPDGGKMPKWTRIILLNWCAWFLRMKRPGEDKVRPACQHK 360

Query: 61  RKALKLKELELKERSSKSLL-ANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTS 119
            +   L  +EL   +       N+L I   FR       + T     DSG   ++    +
Sbjct: 361 PRRCSLASVELSAGAGPPTSNGNLLYIG--FRGLEGMHCAPT----PDSG---VVCGRLA 411

Query: 120 CIGPHRE--------------LTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMC 165
           C   H E              L  IL+E+R I ++ + +DE+  I ++WKFAA VVDR+C
Sbjct: 412 CSPTHDEHLMHGTHPSDGDPDLAKILEEVRYIANRFRCQDESEVICSEWKFAACVVDRLC 471

Query: 166 LIIFTLFTILATVAVLCSAPHII 188
           L+ F++FTI+ T+ +L SAP+ +
Sbjct: 472 LMAFSVFTIICTIGILMSAPNFV 494

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Mus musculus (taxid: 10090)

>sp|Q866A2|ACHA7_MACMU Neuronal acetylcholine receptor subunit alpha-7 OS=Macaca mulatta GN=CHRNA7 PE=2 SV=1

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 24/203 (11%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +V  SVV T+++L YHH + D  +M  W R++ L W    LRM RP E+      +  
Sbjct: 301 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRPACQHK 360

Query: 61  RKALKLKELELKERSSKSLL-ANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTS 119
           ++   L  +E+   +       N+L I   FR       + T     DSG   ++    +
Sbjct: 361 QRRCSLASVEMSAVAPPPASNGNLLYIG--FRGLDGMHCAPT----PDSG---VVCGRMA 411

Query: 120 CIGPHRE--------------LTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMC 165
           C   H E              L  IL+E+R I ++ + +DE+  + ++WKFAA VVDR+C
Sbjct: 412 CSPTHDEHLLHGGQPPEGDPDLAKILEEVRYIANRFRCQDESEAVCSEWKFAACVVDRLC 471

Query: 166 LIIFTLFTILATVAVLCSAPHII 188
           L+ F++FTI+ T+ +L SAP+ +
Sbjct: 472 LMAFSVFTIICTIGILMSAPNFV 494

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Macaca mulatta (taxid: 9544)

>sp|Q494W8|CRFM7_HUMAN CHRNA7-FAM7A fusion protein OS=Homo sapiens GN=CHRFAM7A PE=2 SV=1

 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 16/199 (8%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +V  SVV T+++L YHH + D  +M  W R++ L W    LRM RP E+      +  
Sbjct: 211 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRPACQHK 270

Query: 61  RKALKLKELELKERSSKSLL-ANVLDIDD---DFRHNTLQSSSHTFLR-------HDDSG 109
           ++   L  +E+   +       N+L I     D  H      S            HD+  
Sbjct: 271 QRRCSLASVEMSAVAPPPASNGNLLYIGFRGLDGVHCVPTPDSGVVCGRMACSPTHDEH- 329

Query: 110 GGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIF 169
              +LH      G   +L  IL+E+R I ++ + +DE+  + ++WKFAA VVDR+CL+ F
Sbjct: 330 ---LLHGGQPPEG-DPDLAKILEEVRYIANRFRCQDESEAVCSEWKFAACVVDRLCLMAF 385

Query: 170 TLFTILATVAVLCSAPHII 188
           ++FTI+ T+ +L SAP+ +
Sbjct: 386 SVFTIICTIGILMSAPNFV 404

Homo sapiens (taxid: 9606)

>sp|P36544|ACHA7_HUMAN Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5

 Score =  106 bits (265), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 16/199 (8%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +V  SVV T+++L YHH + D  +M  W R++ L W    LRM RP E+      +  
Sbjct: 301 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRPACQHK 360

Query: 61  RKALKLKELELKERSSKSLL-ANVLDIDD---DFRHNTLQSSSHTFLR-------HDDSG 109
           ++   L  +E+   +       N+L I     D  H      S            HD+  
Sbjct: 361 QRRCSLASVEMSAVAPPPASNGNLLYIGFRGLDGVHCVPTPDSGVVCGRMACSPTHDEH- 419

Query: 110 GGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIF 169
              +LH      G   +L  IL+E+R I ++ + +DE+  + ++WKFAA VVDR+CL+ F
Sbjct: 420 ---LLHGGQPPEG-DPDLAKILEEVRYIANRFRCQDESEAVCSEWKFAACVVDRLCLMAF 475

Query: 170 TLFTILATVAVLCSAPHII 188
           ++FTI+ T+ +L SAP+ +
Sbjct: 476 SVFTIICTIGILMSAPNFV 494

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Homo sapiens (taxid: 9606)

>sp|P09481|ACHA3_CHICK Neuronal acetylcholine receptor subunit alpha-3 OS=Gallus gallus GN=CHRNA3 PE=2 SV=2

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 19/192 (9%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M  V  S+V T+ +LN H+R   TH M  W+R +FL  +P I+ M+RP+ +++ +     
Sbjct: 303 MIFVTLSIVITVFVLNVHYRTPKTHTMPVWVRTIFLNLLPRIMFMTRPTSDEENN----- 357

Query: 61  RKALKLKELELKERSSKSLL--ANVLDIDDDFRHNTLQSSSHTF--LRHDDSGGGTILHA 116
               K K     E S+ +    + +    D F    +  S   +  ++  D  G     +
Sbjct: 358 ---QKPKPFYTSEFSNLNCFNSSEIKCCKDGFVCQDMACSCCQYQRMKFSDFSGNLTRSS 414

Query: 117 TTSCIGPHRELTLILKELR-------VITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIF 169
           ++  + P    +++  E+R        I + ++ ++EA EI +DWK+ AMV+DR+ L +F
Sbjct: 415 SSESVDPLFSFSVLSPEMRDAIESVKYIAENMKMQNEAKEIQDDWKYVAMVIDRIFLWVF 474

Query: 170 TLFTILATVAVL 181
            L  IL T  + 
Sbjct: 475 ILVCILGTAGLF 486

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
219524769	499	nicotinic acetylcholine receptor Nla6 su	0.963	0.366	0.735	2e-74
327241168	518	nicotinic acetylcholine receptor Paa7 su	0.973	0.357	0.722	7e-71
408692427	520	nicotinic acetylcholine receptor alpha7	0.973	0.355	0.712	1e-69
157783852	524	nicotinic acetylcholine receptor alpha 7	1.0	0.362	0.599	6e-62
158262733	528	nicotinic acetylcholine receptor alpha 7	1.0	0.359	0.599	6e-62
392584100	462	nicotinic acetylcholine receptor subunit	0.984	0.404	0.595	2e-61
157111146	316	nicotinic acetylcholine receptor subunit	1.0	0.601	0.560	2e-60
118785484	533	AGAP008588-PA [Anopheles gambiae str. PE	1.0	0.356	0.566	1e-59
4895005	496	putative nicotinic acetylcholine recepto	0.963	0.368	0.630	3e-59
198473222	806	GA17221 [Drosophila pseudoobscura pseudo	1.0	0.235	0.582	9e-59

>gi|219524769|gb|ACL14949.1| nicotinic acetylcholine receptor Nla6 subunit [Nilaparvata lugens]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/200 (73%), Positives = 168/200 (84%), Gaps = 17/200 (8%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           MFMVASSVVSTILILNYHHRNADTHEMSPWI+ VFL WMPC+LRMSRP+        EAT
Sbjct: 305 MFMVASSVVSTILILNYHHRNADTHEMSPWIKSVFLHWMPCLLRMSRPAGGGGNGGGEAT 364

Query: 61  ---RKALKLKELE--LKERSSKSLLANVLDIDDDFRHN-----TLQSSSHTFLR-HDDSG 109
              RK+L+++EL+  LK+RSSKSLLANVLDIDDDFRH      TLQSSSH+FLR H+D  
Sbjct: 365 SDSRKSLQMRELDASLKDRSSKSLLANVLDIDDDFRHGGGGGGTLQSSSHSFLRGHED-- 422

Query: 110 GGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIF 169
            G++LH   SC+GPHRELTLILKELRVITDK++KEDEA+E+TNDWK+ AMVVDR CL +F
Sbjct: 423 -GSVLH---SCLGPHRELTLILKELRVITDKLRKEDEASEVTNDWKYVAMVVDRFCLFVF 478

Query: 170 TLFTILATVAVLCSAPHIIV 189
           TLFTI+ATVAVL SAPHIIV
Sbjct: 479 TLFTIIATVAVLLSAPHIIV 498

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327241168|gb|AEA40428.1| nicotinic acetylcholine receptor Paa7 subunit [Periplaneta americana]

 Score =  271 bits (694), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 146/202 (72%), Positives = 164/202 (81%), Gaps = 17/202 (8%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           MFMVASSVVSTILILNYHHRNADTHEMSPWI+ +FL W+PCILRMSRP  E      +A+
Sbjct: 322 MFMVASSVVSTILILNYHHRNADTHEMSPWIKTIFLHWLPCILRMSRPGGE-----PDAS 376

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRH--NTLQSSSHTFLR-----HDDSGGGTI 113
           RK L+++ELELKERSSKSLLANVLDIDDDFRH   TLQ+S+  FLR     H+D GGG  
Sbjct: 377 RKNLQMRELELKERSSKSLLANVLDIDDDFRHHTGTLQTSAAGFLRGAHTHHEDGGGGGG 436

Query: 114 LHATTSCIG-----PHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLII 168
                   G     PHRELTLILKELRVITDK++KEDEAAE+TNDWKFAAMVVDR+CLII
Sbjct: 437 TLLHGGGGGSSCLGPHRELTLILKELRVITDKLRKEDEAAEVTNDWKFAAMVVDRLCLII 496

Query: 169 FTLFTILATVAVLCSAPHIIVT 190
           FTLFT++AT+AVL SAPHIIVT
Sbjct: 497 FTLFTVIATIAVLFSAPHIIVT 518

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|408692427|gb|AFU82562.1| nicotinic acetylcholine receptor alpha7 subunit [Periplaneta americana]

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 144/202 (71%), Positives = 163/202 (80%), Gaps = 17/202 (8%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           MFMVASSVVSTILILNYHHRNADTHEMSPWI+ +FL W+PCILRMSRP  E      +A+
Sbjct: 324 MFMVASSVVSTILILNYHHRNADTHEMSPWIKTIFLHWLPCILRMSRPGGE-----PDAS 378

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRH--NTLQSSSHTFLR-----HDDSGGGTI 113
           RK L+++ELELKERSSKSLLANVLDIDDDFRH   TLQ+S+  FLR     H+D GGG  
Sbjct: 379 RKNLQMRELELKERSSKSLLANVLDIDDDFRHHTGTLQTSAAGFLRGAHTHHEDGGGGGG 438

Query: 114 LHATTSCIG-----PHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLII 168
                   G     PHRELTLILKELRVITDK++KEDEAAE+T+DWKF AMVVDR+CLII
Sbjct: 439 TLLHGGGGGSSCLGPHRELTLILKELRVITDKLRKEDEAAEVTSDWKFVAMVVDRLCLII 498

Query: 169 FTLFTILATVAVLCSAPHIIVT 190
           FTLFT++AT+AVL SAPHIIVT
Sbjct: 499 FTLFTVIATIAVLFSAPHIIVT 520

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157783852|gb|ABV72697.1| nicotinic acetylcholine receptor alpha 7 subunit [Tribolium castaneum]

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 127/212 (59%), Positives = 154/212 (72%), Gaps = 22/212 (10%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRP-------SEEDK 53
           MFMVASSVVSTILILNYHHRNADTHEMS WI++VFL W+P +LRM RP        +  +
Sbjct: 313 MFMVASSVVSTILILNYHHRNADTHEMSEWIKVVFLIWLPWLLRMHRPHGSCEYGQQPSR 372

Query: 54  TSLTEATRKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHT-----------F 102
            +     RK L  +++ELKERSSKSLLANVLDIDDDFRHN     + T           +
Sbjct: 373 PASVATDRKPLHFQDVELKERSSKSLLANVLDIDDDFRHNHRGGGTPTPLPTATFFRTVY 432

Query: 103 LRHDDSGGGTILH----ATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAA 158
            +++D+G G  LH    +  SC+    EL LILKE+R ITD+++KEDEAA+IT DWKFAA
Sbjct: 433 RQNEDNGNGGRLHESLVSNHSCLSADYELALILKEIRFITDQLRKEDEAADITRDWKFAA 492

Query: 159 MVVDRMCLIIFTLFTILATVAVLCSAPHIIVT 190
           MVVDR+CLIIFTLFTI+AT+AVL SAPHIIV+
Sbjct: 493 MVVDRLCLIIFTLFTIIATLAVLFSAPHIIVS 524

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158262733|ref|NP_001103420.1| nicotinic acetylcholine receptor alpha 7 subunit precursor [Tribolium castaneum] gi|154810985|gb|ABS86911.1| nicotinic acetylcholine receptor subunit alpha7 [Tribolium castaneum] gi|227439247|gb|ACP31301.1| nicotinic acetylcholine receptor a7 subunit [Tribolium castaneum] gi|270015609|gb|EFA12057.1| nicotinic acetylcholine receptor subunit alpha7 [Tribolium castaneum]

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 127/212 (59%), Positives = 154/212 (72%), Gaps = 22/212 (10%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRP-------SEEDK 53
           MFMVASSVVSTILILNYHHRNADTHEMS WI++VFL W+P +LRM RP        +  +
Sbjct: 317 MFMVASSVVSTILILNYHHRNADTHEMSEWIKVVFLIWLPWLLRMHRPHGSCEYGQQPSR 376

Query: 54  TSLTEATRKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHT-----------F 102
            +     RK L  +++ELKERSSKSLLANVLDIDDDFRHN     + T           +
Sbjct: 377 PASVATDRKPLHFQDVELKERSSKSLLANVLDIDDDFRHNHRGGGTPTPLPTATFFRTVY 436

Query: 103 LRHDDSGGGTILH----ATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAA 158
            +++D+G G  LH    +  SC+    EL LILKE+R ITD+++KEDEAA+IT DWKFAA
Sbjct: 437 RQNEDNGNGGRLHESLVSNHSCLSADYELALILKEIRFITDQLRKEDEAADITRDWKFAA 496

Query: 159 MVVDRMCLIIFTLFTILATVAVLCSAPHIIVT 190
           MVVDR+CLIIFTLFTI+AT+AVL SAPHIIV+
Sbjct: 497 MVVDRLCLIIFTLFTIIATLAVLFSAPHIIVS 528

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|392584100|gb|AFM78640.1| nicotinic acetylcholine receptor subunit alpha 7 subunit [Aphis gossypii]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 131/220 (59%), Positives = 154/220 (70%), Gaps = 33/220 (15%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEED------KT 54
           MFMVASSVVSTI+ILNYHHRNADTH MS W++L+FL WMPC+L MSRPS +D      K+
Sbjct: 246 MFMVASSVVSTIMILNYHHRNADTHVMSKWVKLMFLVWMPCLLCMSRPSRDDTPGNGNKS 305

Query: 55  SLTE---ATRKALKLKELELKERSSKSLLANVLDIDDDFRHNT----------------- 94
           S T+   AT     L +LE + +SS+SLLANVLD+DDD R +T                 
Sbjct: 306 SDTKNKSATSSIHHLPDLEFRAKSSRSLLANVLDLDDDLRSSTRSYPGARSQVAPMPEHV 365

Query: 95  ---LQSSSHTFLRHDDSGGGTILH-ATTSCIGPHRELTLILKELRVITDKIQKEDEAAEI 150
               Q   HT L     GGGT    A TSC+GPHREL+LILKELRVITDK++K++E  EI
Sbjct: 366 MVEQQQQQHTMLS---GGGGTASAVAATSCLGPHRELSLILKELRVITDKLRKDEEDEEI 422

Query: 151 TNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIVT 190
           TNDWKFAAMVVDRMCL IFT FT+ AT+AVL SAPH+IVT
Sbjct: 423 TNDWKFAAMVVDRMCLYIFTFFTVAATIAVLMSAPHVIVT 462

Source: Aphis gossypii

Species: Aphis gossypii

Genus: Aphis

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157111146|ref|XP_001651408.1| nicotinic acetylcholine receptor subunit [Aedes aegypti] gi|108878511|gb|EAT42736.1| AAEL005750-PA, partial [Aedes aegypti]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/216 (56%), Positives = 150/216 (69%), Gaps = 26/216 (12%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPS-----EEDKTS 55
           MFMVASSVVSTILILNYHHRNADTHEMS W+R++FL W+PCILRMSRP      E   T 
Sbjct: 101 MFMVASSVVSTILILNYHHRNADTHEMSDWVRIIFLYWLPCILRMSRPGRSLSVEYPPTP 160

Query: 56  LTEATRKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILH 115
            ++++ +   ++++ELKERSSKSLLANVLDIDDDFRHN    +    L H+ +   T+  
Sbjct: 161 TSDSSERKTHIQDVELKERSSKSLLANVLDIDDDFRHNCRPLTPGGTLPHNPTYFRTVYS 220

Query: 116 ATTSCIGP---------------------HRELTLILKELRVITDKIQKEDEAAEITNDW 154
           +    +GP                       EL LILKE+R ITD+I+KEDE +++  DW
Sbjct: 221 SDDGSMGPIGSNRMPDAIAPPHTCFTSSADYELALILKEIRFITDQIRKEDEDSDVAKDW 280

Query: 155 KFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIVT 190
           KFAAMVVDR+CLIIFT FTI+AT+AVL SAPHIIV+
Sbjct: 281 KFAAMVVDRLCLIIFTFFTIVATIAVLFSAPHIIVS 316

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118785484|ref|XP_314691.2| AGAP008588-PA [Anopheles gambiae str. PEST] gi|51873085|gb|AAU12508.1| nicotinic acetylcholine receptor subunit alpha 5 [Anopheles gambiae] gi|116127759|gb|EAA44351.2| AGAP008588-PA [Anopheles gambiae str. PEST]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/217 (56%), Positives = 151/217 (69%), Gaps = 27/217 (12%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPS-----EEDKTS 55
           MFMVASSVVSTILILNYHHRNADTHEMS W+R++FL W+PCILRMSRP      E   T 
Sbjct: 317 MFMVASSVVSTILILNYHHRNADTHEMSDWVRVIFLYWLPCILRMSRPGRDLSMEYPPTP 376

Query: 56  LTEATRKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILH 115
            ++++ +   ++++ELKERSSKSLLANVLDIDDDFRHN    +    L H+ +   T+  
Sbjct: 377 TSDSSERKAHIQDVELKERSSKSLLANVLDIDDDFRHNCRPLTPGGTLPHNPTYFRTVYS 436

Query: 116 ATT-SCIGP---------------------HRELTLILKELRVITDKIQKEDEAAEITND 153
           ++    IGP                       EL LILKE+R ITD+I+KEDE ++I  D
Sbjct: 437 SSDDGSIGPIGTNRMPDAIAPPHTCFTSSADYELALILKEIRFITDQIRKEDEESDIAKD 496

Query: 154 WKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIVT 190
           WKFAAMVVDR+CLIIFT FTI+AT+AVL SAPHIIV+
Sbjct: 497 WKFAAMVVDRLCLIIFTFFTIVATIAVLFSAPHIIVS 533

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|4895005|gb|AAD32697.1|AF143846_1 putative nicotinic acetylcholine receptor alpha 7-1 subunit [Heliothis virescens]

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 146/192 (76%), Gaps = 9/192 (4%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           MFMVASSVVSTILILNYHHR+ADTHEMS WIR VFL W+P +LRMSRP     ++ T   
Sbjct: 312 MFMVASSVVSTILILNYHHRHADTHEMSDWIRCVFLYWLPWVLRMSRPG----SATTPPP 367

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSS--HTFLRHDDSGGGTILHATT 118
            +     +LEL+ERSSKSLLANVLDIDDDFRH   Q       +   +++G G   H   
Sbjct: 368 ARVPPPPDLELRERSSKSLLANVLDIDDDFRHPQAQQPQCCRYYRGGEENGAGLAAH--- 424

Query: 119 SCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATV 178
           SC G   EL+LILKE+RVITD+++K+DE A+I+ DWKFAAMVVDR+CLIIFTLFTI+AT+
Sbjct: 425 SCFGVDYELSLILKEIRVITDQMRKDDEDADISRDWKFAAMVVDRLCLIIFTLFTIIATL 484

Query: 179 AVLCSAPHIIVT 190
           AVL SAPHI+V+
Sbjct: 485 AVLLSAPHIMVS 496

Source: Heliothis virescens

Species: Heliothis virescens

Genus: Heliothis

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198473222|ref|XP_001356210.2| GA17221 [Drosophila pseudoobscura pseudoobscura] gi|198139359|gb|EAL33270.2| GA17221 [Drosophila pseudoobscura pseudoobscura]

 Score =  231 bits (590), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 127/218 (58%), Positives = 147/218 (67%), Gaps = 28/218 (12%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEE-------DK 53
           MFMVASSVVSTILILNYHHRNADTHEMS WIR+VFL W+P ILRMSRP            
Sbjct: 589 MFMVASSVVSTILILNYHHRNADTHEMSEWIRIVFLCWLPWILRMSRPGRPLILEFPTTP 648

Query: 54  TSLTEATRKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTI 113
            S T + RK   L ++ELKERSSKSLLANVLDIDDDFRHN    +    L H+ +   T+
Sbjct: 649 CSDTSSERKHQILSDVELKERSSKSLLANVLDIDDDFRHNCRPMTPGGTLPHNPAFYRTV 708

Query: 114 L-HATTSCIGP--------------------HRELTLILKELRVITDKIQKEDEAAEITN 152
                   IGP                      EL LILKE+R ITD+++K+DE+ +I N
Sbjct: 709 YGQGDDGSIGPIGSTRMPDAVSHHTCIKSSTEYELGLILKEIRFITDQLRKDDESNDIAN 768

Query: 153 DWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIVT 190
           DWKFAAMVVDR+CLIIFT+FTILAT+AVL SAPHIIV+
Sbjct: 769 DWKFAAMVVDRLCLIIFTMFTILATIAVLLSAPHIIVS 806

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
FB|FBgn0028875	808	nAcRalpha-34E "nicotinic Acety	0.647	0.152	0.496	4e-46
FB|FBgn0032151	523	nAcRalpha-30D "nicotinic Acety	0.963	0.349	0.541	1.5e-44
FB|FBgn0086778	564	gfA "giant fibre A" [Drosophil	0.342	0.115	0.753	2.6e-44
ZFIN|ZDB-GENE-060503-606	589	si:ch211-39a7.1 "si:ch211-39a7	0.426	0.137	0.395	2e-24
UNIPROTKB|G3N2K7	360	CHRNA7 "Neuronal acetylcholine	0.394	0.208	0.434	1.3e-23
UNIPROTKB|F1MQB9	389	CHRNA7 "Neuronal acetylcholine	0.394	0.192	0.434	2e-23
UNIPROTKB|F1P4Y5	502	CHRNA7 "Neuronal acetylcholine	0.331	0.125	0.476	3.4e-23
UNIPROTKB|P22770	502	CHRNA7 "Neuronal acetylcholine	0.331	0.125	0.476	3.4e-23
UNIPROTKB|F1SNR6	390	CHRNA7 "Uncharacterized protei	0.331	0.161	0.460	4.3e-23
UNIPROTKB|P54131	499	CHRNA7 "Neuronal acetylcholine	0.394	0.150	0.434	4.4e-23

FB|FBgn0028875 nAcRalpha-34E "nicotinic Acetylcholine Receptor alpha 34E" [Drosophila melanogaster (taxid:7227)]

 Score = 264 (98.0 bits), Expect = 4.0e-46, Sum P(2) = 4.0e-46
 Identities = 65/131 (49%), Positives = 72/131 (54%)

Query:     1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSE----EDKT-- 54
             MFMVASSVVSTILILNYHHRNADTHEMS WIR+VFL W+P ILRMSRP      E  T  
Sbjct:   591 MFMVASSVVSTILILNYHHRNADTHEMSEWIRIVFLCWLPWILRMSRPGRPLILEFPTTP 650

Query:    55 -SLTEATXXXXXXXXXXXXXXXXXXXXXNVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTI 113
              S T +                      NVLDIDDDFRHN    +    L H+ +   T+
Sbjct:   651 CSDTSSERKHQILSDVELKERSSKSLLANVLDIDDDFRHNCRPMTPGGTLPHNPAFYRTV 710

Query:   114 L-HATTSCIGP 123
                     IGP
Sbjct:   711 YGQGDDGSIGP 721

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;IDA;NAS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS;IDA;NAS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0042166 "acetylcholine binding" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

FB|FBgn0032151 nAcRalpha-30D "nicotinic Acetylcholine Receptor alpha 30D" [Drosophila melanogaster (taxid:7227)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 104/192 (54%), Positives = 125/192 (65%)

Query:     1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
             MFMVASSVV T+++LNYHHR AD HEM PWI+ VFLQW+P ILRM RP  +    +T  T
Sbjct:   337 MFMVASSVVLTVVVLNYHHRTADIHEMPPWIKSVFLQWLPWILRMGRPGRK----ITRKT 392

Query:    61 XXXXXXXXXXXXXXXXXXXX-XNVLDIDDDFRHNTLQSSSHTFLRHDDS-GGGTILHATT 118
                                   NVLDIDDDFRH T+ S S T +    S G  T +    
Sbjct:   393 ILLSNRMKELELKERSSKSLLANVLDIDDDFRH-TI-SGSQTAIGSSASFGRPTTVEEHH 450

Query:   119 SCIG-PHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILAT 177
             + IG  H++L LILKEL+ IT +++K D+ AE+  DWKFAAMVVDR CLI+FTLFTI+AT
Sbjct:   451 TAIGCNHKDLHLILKELQFITARMRKADDEAELIGDWKFAAMVVDRFCLIVFTLFTIIAT 510

Query:   178 VAVLCSAPHIIV 189
             V VL SAPHIIV
Sbjct:   511 VTVLLSAPHIIV 522

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;IDA;NAS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS;IDA;NAS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0017085 "response to insecticide" evidence=IMP;NAS

GO:0016021 "integral to membrane" evidence=IDA

GO:0046716 "muscle cell homeostasis" evidence=IMP

FB|FBgn0086778 gfA "giant fibre A" [Drosophila melanogaster (taxid:7227)]

 Score = 252 (93.8 bits), Expect = 2.6e-44, Sum P(2) = 2.6e-44
 Identities = 49/65 (75%), Positives = 59/65 (90%)

Query:   126 ELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAP 185
             EL LILKELR IT++++KEDE ++IT DWKFAAMVVDR+CLIIFTLFTI+AT+AVL SAP
Sbjct:   496 ELALILKELRWITEQLKKEDETSDITRDWKFAAMVVDRLCLIIFTLFTIIATLAVLFSAP 555

Query:   186 HIIVT 190
             H IV+
Sbjct:   556 HFIVS 560

GO:0007630 "jump response" evidence=IMP

GO:0007268 "synaptic transmission" evidence=IMP

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;NAS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0060079 "regulation of excitatory postsynaptic membrane potential" evidence=IMP

GO:0007632 "visual behavior" evidence=IMP

GO:0030425 "dendrite" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

ZFIN|ZDB-GENE-060503-606 si:ch211-39a7.1 "si:ch211-39a7.1" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
 Identities = 32/81 (39%), Positives = 53/81 (65%)

Query:   108 SGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLI 167
             SGGG     + +  G   +L  IL+E+R + D+ + +DE   +T  WKFAA V+DR+CL+
Sbjct:   501 SGGGGGCSCSGTSGGGDPQLQAILEEVRYVADRFRGQDENESVTEQWKFAAAVIDRLCLV 560

Query:   168 IFTLFTILATVAVLCSAPHII 188
              F++F I+ T+++L SAP+ +
Sbjct:   561 AFSVFNIICTISILMSAPNFV 581

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|G3N2K7 CHRNA7 "Neuronal acetylcholine receptor subunit alpha-7" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 33/76 (43%), Positives = 52/76 (68%)

Query:   113 ILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLF 172
             +LHA     G   +L  IL+E+R I  + + +DE+  + ++WKFAA VVDR+CL+ F++F
Sbjct:   278 LLHAGQPSEGDP-DLAKILEEVRYIAHRFRCQDESEAVCSEWKFAACVVDRLCLMAFSVF 336

Query:   173 TILATVAVLCSAPHII 188
             TIL T+ +L SAP+ +
Sbjct:   337 TILCTIGILMSAPNFV 352

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

UNIPROTKB|F1MQB9 CHRNA7 "Neuronal acetylcholine receptor subunit alpha-7" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
 Identities = 33/76 (43%), Positives = 52/76 (68%)

Query:   113 ILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLF 172
             +LHA     G   +L  IL+E+R I  + + +DE+  + ++WKFAA VVDR+CL+ F++F
Sbjct:   307 LLHAGQPSEGDP-DLAKILEEVRYIAHRFRCQDESEAVCSEWKFAACVVDRLCLMAFSVF 365

Query:   173 TILATVAVLCSAPHII 188
             TIL T+ +L SAP+ +
Sbjct:   366 TILCTIGILMSAPNFV 381

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0008306 "associative learning" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0007271 "synaptic transmission, cholinergic" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0001988 "positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0060112 "generation of ovulation cycle rhythm" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0048149 "behavioral response to ethanol" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0042113 "B cell activation" evidence=IEA

GO:0042110 "T cell activation" evidence=IEA

GO:0035095 "behavioral response to nicotine" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0032715 "negative regulation of interleukin-6 production" evidence=IEA

GO:0032691 "negative regulation of interleukin-1 beta production" evidence=IEA

GO:0032225 "regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0032094 "response to food" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0014061 "regulation of norepinephrine secretion" evidence=IEA

UNIPROTKB|F1P4Y5 CHRNA7 "Neuronal acetylcholine receptor subunit alpha-7" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 30/63 (47%), Positives = 47/63 (74%)

Query:   126 ELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAP 185
             +L  IL+E+R I ++ + +DE   I N+WKFAA VVDR+CL+ F++FTI+ T+ +L SAP
Sbjct:   432 DLAKILEEVRYIANRFRDQDEEEAICNEWKFAASVVDRLCLMAFSVFTIICTIGILMSAP 491

Query:   186 HII 188
             + +
Sbjct:   492 NFV 494

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0048149 "behavioral response to ethanol" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0060112 "generation of ovulation cycle rhythm" evidence=IEA

GO:0001988 "positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0007271 "synaptic transmission, cholinergic" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0008306 "associative learning" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0014061 "regulation of norepinephrine secretion" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0032094 "response to food" evidence=IEA

GO:0032225 "regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0032691 "negative regulation of interleukin-1 beta production" evidence=IEA

GO:0032715 "negative regulation of interleukin-6 production" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0035095 "behavioral response to nicotine" evidence=IEA

GO:0042110 "T cell activation" evidence=IEA

GO:0042113 "B cell activation" evidence=IEA

UNIPROTKB|P22770 CHRNA7 "Neuronal acetylcholine receptor subunit alpha-7" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 30/63 (47%), Positives = 47/63 (74%)

Query:   126 ELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAP 185
             +L  IL+E+R I ++ + +DE   I N+WKFAA VVDR+CL+ F++FTI+ T+ +L SAP
Sbjct:   432 DLAKILEEVRYIANRFRDQDEEEAICNEWKFAASVVDRLCLMAFSVFTIICTIGILMSAP 491

Query:   186 HII 188
             + +
Sbjct:   492 NFV 494

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0050890 "cognition" evidence=ISS

GO:0042166 "acetylcholine binding" evidence=ISS

GO:0000187 "activation of MAPK activity" evidence=ISS

GO:0001540 "beta-amyloid binding" evidence=ISS

GO:0001666 "response to hypoxia" evidence=ISS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0006816 "calcium ion transport" evidence=ISS

GO:0006874 "cellular calcium ion homeostasis" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0015464 "acetylcholine receptor activity" evidence=ISS

GO:0015643 "toxic substance binding" evidence=ISS

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=ISS

GO:0035094 "response to nicotine" evidence=ISS

GO:0045766 "positive regulation of angiogenesis" evidence=ISS

GO:0017081 "chloride channel regulator activity" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

UNIPROTKB|F1SNR6 CHRNA7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 167 (63.8 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 29/63 (46%), Positives = 47/63 (74%)

Query:   126 ELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAP 185
             +L  IL+E+R I ++ + +DE   + ++WKFAA VVDR+CL+ F++FTIL T+ +L SAP
Sbjct:   320 DLAKILEEVRYIANRFRCQDEGEAVCSEWKFAACVVDRLCLMAFSVFTILCTIGILMSAP 379

Query:   186 HII 188
             + +
Sbjct:   380 NFV 382

GO:0060112 "generation of ovulation cycle rhythm" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0048149 "behavioral response to ethanol" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0042113 "B cell activation" evidence=IEA

GO:0042110 "T cell activation" evidence=IEA

GO:0035095 "behavioral response to nicotine" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0032715 "negative regulation of interleukin-6 production" evidence=IEA

GO:0032691 "negative regulation of interleukin-1 beta production" evidence=IEA

GO:0032225 "regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0032094 "response to food" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0014061 "regulation of norepinephrine secretion" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0008306 "associative learning" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0007271 "synaptic transmission, cholinergic" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0001988 "positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|P54131 CHRNA7 "Neuronal acetylcholine receptor subunit alpha-7" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
 Identities = 33/76 (43%), Positives = 52/76 (68%)

Query:   113 ILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLF 172
             +LHA     G   +L  IL+E+R I  + + +DE+  + ++WKFAA VVDR+CL+ F++F
Sbjct:   417 LLHAGQPSEGDP-DLAKILEEVRYIAHRFRCQDESEAVCSEWKFAACVVDRLCLMAFSVF 475

Query:   173 TILATVAVLCSAPHII 188
             TIL T+ +L SAP+ +
Sbjct:   476 TILCTIGILMSAPNFV 491

GO:0006816 "calcium ion transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS

GO:0001666 "response to hypoxia" evidence=ISS

GO:0000187 "activation of MAPK activity" evidence=ISS

GO:0001540 "beta-amyloid binding" evidence=ISS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0015643 "toxic substance binding" evidence=ISS

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0050890 "cognition" evidence=ISS

GO:0045766 "positive regulation of angiogenesis" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0042166 "acetylcholine binding" evidence=ISS

GO:0035094 "response to nicotine" evidence=ISS

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=ISS

GO:0017081 "chloride channel regulator activity" evidence=ISS

GO:0015464 "acetylcholine receptor activity" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0006874 "cellular calcium ion homeostasis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	190
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	3e-26
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	2e-09

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score = 99.7 bits (249), Expect = 3e-26
 Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 18/178 (10%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           MF+  +SV   +++LN HHR+  TH+M  W+R +FL+ +P +L M RP E          
Sbjct: 66  MFVFTASVEYAVVVLNVHHRSPSTHKMPEWVRKLFLRKLPRLLFMKRPPES--------- 116

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
                     L+  SS S          + +      +S        SG G+    +   
Sbjct: 117 --LSPPAAPNLRRSSSSSGSVLEPASGKESKGVGGPETSSGLPGGSGSGLGSPFRLSP-- 172

Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATV 178
                EL   L+ +R I + ++  DE  E+  DWK+ AMV+DR+   IF +  +L T+
Sbjct: 173 -----ELKKALEGVRFIAEHLRSRDEFDEVKEDWKYVAMVIDRLSRWIFPIAFVLGTL 225

This family includes the four transmembrane helices that form the ion channel. Length = 228

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 35/178 (19%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M  V  +++ T  +   HH++    +       + L+     L    P E+ +    +  
Sbjct: 311 MAFVFLALLETAFVNYVHHKDPAQGKRH-----LLLERCAWRLCKQEPGEDYRRPALDHA 365

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
                L  +E++ +     L                         +       L  +   
Sbjct: 366 ----SLSSVEMRAKDGGRGL-------------------------ESPTERQRLLHSPPP 396

Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATV 178
                +L  IL+E+R+   + +K DE+ E+  DWKF A V+D++  + F L  +L  +
Sbjct: 397 AEGDLDLAGILEEVRIA-HRFRKRDESEEVVRDWKFRAKVIDKLSRMAFPLAFLLFNI 453

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
KOG3646|consensus	486		100.0
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	99.91
TIGR00860	459	LIC Cation transporter family protein. selective w	99.88
KOG3645|consensus	449		99.72

>KOG3646|consensus

Probab=100.00  E-value=5.5e-34  Score=231.84  Aligned_cols=180  Identities=44%  Similarity=0.688  Sum_probs=113.7

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhhhhhccchhhh
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLL   80 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (190)
                      |++|++|+++||+|||+|||+|.+|.|++|+|++||+|+|++|+|+||......... ..++...  ... .....+...
T Consensus       306 m~iv~~SvvfTv~vLn~h~R~p~~h~m~p~~r~vfL~wlpwll~M~rP~~~~~~~~~-~~~~~~~--~~~-~~~~~~~~~  381 (486)
T KOG3646|consen  306 MFIVAASVVFTVIVLNLHHRTPETHEMSPWTRSVFLEWLPWLLRMKRPFILRRTHPS-LRMKELD--RKL-KRGEHKSAE  381 (486)
T ss_pred             HHHHHhhheeEEEEEeeeccCccccccCHHHHHHHHHHHHHHHHhcCCCccccCCch-hhhhhhh--hhc-ccccccchh
Confidence            688999999999999999999999999999999999999999999999332221110 0111110  000 000000001


Q ss_pred             cccCCCCCcccCCCCCCCCCcccccCCCCCCccccC-ccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHH
Q psy11695         81 ANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHA-TTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAM  159 (190)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~  159 (190)
                      .++.+..+.........  . ..+..........+. .........++..+.+.++.+.++++++++++++++||||+||
T Consensus       382 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~dWkFAAm  458 (486)
T KOG3646|consen  382 ANGLDGFDLFNQRVSQS--L-TPRGRTASLPVISEHVSTATQFILKELHLILKELRAILDRMEEDDKEEALQSDWKFAAM  458 (486)
T ss_pred             hhccccccCCCccccCC--C-CCcccccCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhHHHH
Confidence            11111111111000000  0 000000000000000 0000112346788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695        160 VVDRMCLIIFTLFTILATVAVLCSAPHIIV  189 (190)
Q Consensus       160 VlDRl~l~if~l~~~~~t~~i~~~~p~~~~  189 (190)
                      |+||+||++|+++++++  +|++.+|++++
T Consensus       459 vVDRlCL~~Fs~fiii~--~i~~~~p~l~~  486 (486)
T KOG3646|consen  459 VVDRLCLLAFSVFIVMC--GILLSAPHLVA  486 (486)
T ss_pred             HHHHHHHHHHHHHHHHH--HHhhcCCccCC
Confidence            99999999999999998  88999999874

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.91  E-value=6.3e-26  Score=172.44  Aligned_cols=172  Identities=28%  Similarity=0.470  Sum_probs=75.0

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhhhhhccchhhh
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLL   80 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (190)
                      |+++++++..||+++|+|||++.+++||+|+|+++++++|+++||++|....................   . ... ...
T Consensus        66 ~~v~~~~~~~avv~~~~~~~~~~~~~~~~~~r~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~-~~~  140 (237)
T PF02932_consen   66 MFVFSASLEFAVVVYNIHHRGPRTRPMPPWVRRLFLEKLARLLCMKRPSEKERKPASSQESRSRSSSS---S-RKE-SET  140 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTT-S------------------------------------------------------
T ss_pred             chhhhHHHHhhhhhhhhcccccccccccchhHHHHhhhhhhhhhhccccccccccccccccccccccc---c-ccc-ccc
Confidence            45678899999999999999999999999999999999999999998865432211100000000000   0 000 000


Q ss_pred             cccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHHH
Q psy11695         81 ANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMV  160 (190)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~V  160 (190)
                      .+..  .....+................. .. ...........+.++++.+++++|++|+++++++++.++||+++|+|
T Consensus       141 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ew~~~A~v  216 (237)
T PF02932_consen  141 DKDP--SQSQSSSNSSSSSQNSPNSRSSS-SS-SSNSSSEQSLSPSLRRILEGVRFIAEHLREQDEEEEIKEEWKFVAMV  216 (237)
T ss_dssp             -----------------------------------SS---TTGGG----HHHHHHHHHHHHHHHHHHHHHHHHHHSTSHH
T ss_pred             cccc--ccccccccccccccccccccccc-cc-cccccccccccHHHhhhhcccceeecccccccccccccccccccHHH
Confidence            0000  00000000000000000000000 00 00000112234578899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q psy11695        161 VDRMCLIIFTLFTILATVAVL  181 (190)
Q Consensus       161 lDRl~l~if~l~~~~~t~~i~  181 (190)
                      +||+|+|+|.+++++++++++
T Consensus       217 iDR~~~~~F~i~f~~~~i~yw  237 (237)
T PF02932_consen  217 IDRLFRILFPIAFILFNIVYW  237 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhC
Confidence            999999999999999999874

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

>TIGR00860 LIC Cation transporter family protein

Probab=99.88  E-value=5e-23  Score=174.53  Aligned_cols=147  Identities=22%  Similarity=0.310  Sum_probs=101.1

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhhhhhccchhhh
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLL   80 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (190)
                      |++|++|++.|++|+|+|||+|.+|+     |++||+++|+++||++|..+.....   ..... ....+.   .     
T Consensus       311 ~~~v~~sli~tv~V~~~~~~~~~~~~-----r~~~l~~l~~~l~~~~~~~~~~~~~---~~~~~-~~~~~~---~-----  373 (459)
T TIGR00860       311 MAFVFLALLETAFVNYVHHKDPAQGK-----RHLLLERCAWRLCKQEPGEDYRRPA---LDHAS-LSSVEM---R-----  373 (459)
T ss_pred             HHHHHHHHHHHHhheeEEccCCCCCc-----eehHHhhchHHhcccCccccccccc---ccccc-cchhcc---c-----
Confidence            57899999999999999999999987     9999999999999999875322100   00000 000000   0     


Q ss_pred             cccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHHH
Q psy11695         81 ANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMV  160 (190)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~V  160 (190)
                       .      ..+..  ...   ...........     .......++++++.+++++| +|+++++++++.++|||++|+|
T Consensus       374 -~------~~~~~--~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~W~~~a~v  435 (459)
T TIGR00860       374 -A------KDGGR--GLE---SPTERQRLLHS-----PPPAEGDLDLAGILEEVRIA-HRFRKRDESEEVVRDWKFRAKV  435 (459)
T ss_pred             -c------ccccc--ccC---CcccccccCCC-----CCccccCHHHHHHHhhhhHH-HHHHhhhhhhcccchhhhccch
Confidence             0      00000  000   00000000000     00011346899999999999 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q psy11695        161 VDRMCLIIFTLFTILATVAVLC  182 (190)
Q Consensus       161 lDRl~l~if~l~~~~~t~~i~~  182 (190)
                      +||+|||+|.++++++|+++++
T Consensus       436 iDr~~~~~f~~~~~~~~~~~~~  457 (459)
T TIGR00860       436 IDKLSRMAFPLAFLLFNIGYWM  457 (459)
T ss_pred             hhHHHHHHHHHHHHHhhhhheE
Confidence            9999999999999999999885

selective while glycine receptors are anion selective).

>KOG3645|consensus

Probab=99.72  E-value=7.7e-18  Score=142.54  Aligned_cols=137  Identities=36%  Similarity=0.623  Sum_probs=94.9

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCC-CCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhhhhhccchhh
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTH-EMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSL   79 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~-~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
                      |+++++|+++||+++|+|||++.+| +||+|++++|++++|++++|++|+......     +....  ....        
T Consensus       311 m~~~~~sv~~tv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~--------  375 (449)
T KOG3645|consen  311 MVLVTISVVVTVVILNLHHRSPTTHPPMPPWVRRVFLEKLPRLLLMSRPEDELQVS-----RLIVL--GISV--------  375 (449)
T ss_pred             HHHHHHHHHHheeEEeeecccCCCCCCCchHHHHHHHHHHHHHHhcCCcccccccc-----ccccc--cccc--------
Confidence            6789999999999999999999999 899999999999999999999886511100     00000  0000        


Q ss_pred             hcccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHH
Q psy11695         80 LANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAM  159 (190)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~  159 (190)
                        ....    ....  ....... ..    ....     ......++++++.+.+++|+++++.++..++..+||+++|+
T Consensus       376 --~~~~----~~~~--~~~~~~~-~~----~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~w~~va~  437 (449)
T KOG3645|consen  376 --KLFK----ITKS--LGSIPVF-SS----ADPL-----LSPELSPELRKAIEGVDFIAEHLKSEDNFQEIREDWKYVAM  437 (449)
T ss_pred             --cccc----cccc--ccccccc-cc----cccc-----ccccccHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence              0000    0000  0000000 00    0000     00114578889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy11695        160 VVDRMCLIIFT  170 (190)
Q Consensus       160 VlDRl~l~if~  170 (190)
                      |+||+|||+|+
T Consensus       438 v~dr~~l~~f~  448 (449)
T KOG3645|consen  438 VLDRLLLWIFL  448 (449)
T ss_pred             HHHHHhhheEe
Confidence            99999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
1oed_B	250	Structure Of Acetylcholine Receptor Pore From Elect		6e-11
4aq5_B	493	Gating Movement In Acetylcholine Receptor Analysed		6e-11
4aq5_A	461	Gating Movement In Acetylcholine Receptor Analysed		2e-10
1oed_A	227	Structure Of Acetylcholine Receptor Pore From Elect		3e-10
1oed_C	260	Structure Of Acetylcholine Receptor Pore From Elect		4e-05
4aq5_C	522	Gating Movement In Acetylcholine Receptor Analysed		9e-05
2bg9_A	370	Refined Structure Of The Nicotinic Acetylcholine Re		3e-04

>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 250

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 90/202 (44%), Gaps = 45/202 (22%)
Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSR----PSEEDKTSL 56
           M +VA SV+ ++++LN HHR+ +TH M  WIR +F++ +P  L + R    PS + K ++
Sbjct: 72  MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTI 131
Query: 57  TEATXXXXXXXXXXXXXXXXXXXXXNVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTI--- 113
                                         +D++    ++  +  F+   D+    +   
Sbjct: 132 ISRA--------------------------NDEY---FIRKPAGDFVCPVDNARVAVQPE 162
Query: 114 ---------LHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRM 164
                    L+  T  +   ++L   ++ ++ I ++++   E  ++  DW++ AMV DR+
Sbjct: 163 RLFSEMKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRL 222
Query: 165 CLIIFTLFTILATVAVLCSAPH 186
            L +F +   + T ++   A H
Sbjct: 223 FLYVFFVICSIGTFSIFLDASH 244

>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 89/202 (44%), Gaps = 45/202 (22%)
Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSR----PSEEDKTSL 56
           M +VA SV+ ++++LN HHR+ +TH M  WIR +F++ +P  L + R    PS + K ++
Sbjct: 312 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTI 371
Query: 57  TEATXXXXXXXXXXXXXXXXXXXXXNVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTI--- 113
                                         +D++    ++  +  F+   D+    +   
Sbjct: 372 ISRA--------------------------NDEY---FIRKPAGDFVCPVDNARVAVQPE 402
Query: 114 ---------LHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRM 164
                    L+  T  +   ++L   ++ ++ I ++++   E  ++  DW++ AMV DR+
Sbjct: 403 RLFSEMKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRL 462
Query: 165 CLIIFTLFTILATVAVLCSAPH 186
            L IF     + T ++   A H
Sbjct: 463 FLYIFITMCSIGTFSIFLDASH 484

>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 42/186 (22%)
Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCIL---RMSRPSEEDKTSLT 57
           M  V SS++ T++++N HHR+  TH M  W+R +F+  +P ++    M R S+E + +  
Sbjct: 306 MIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTMKRASKEKQENKI 365
Query: 58  EATXXXXXXXXXXXXXXXXXXXXXNVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHAT 117
            A                            DD   + +     T         G ++  T
Sbjct: 366 FA----------------------------DDIDISDISGKQVT---------GEVIFQT 388
Query: 118 TSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILAT 177
                P  ++   ++ ++ I + ++ ++E++    +WK+ AMV+D + L +F L  I+ T
Sbjct: 389 PLIKNP--DVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGT 446
Query: 178 VAVLCS 183
           V+V   
Sbjct: 447 VSVFAG 452

>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 227

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 42/186 (22%)
Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCIL---RMSRPSEEDKTSLT 57
           M  V SS++ T++++N HHR+  TH M  W+R +F+  +P ++    M R S+E + +  
Sbjct: 72  MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASKEKQENKI 131
Query: 58  EATXXXXXXXXXXXXXXXXXXXXXNVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHAT 117
            A                            DD   + +     T         G ++  T
Sbjct: 132 FA----------------------------DDIDISDISGKQVT---------GEVIFQT 154
Query: 118 TSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILAT 177
                P  ++   ++ ++ I + ++ ++E++    +WK+ AMV+D + L +F L  I+ T
Sbjct: 155 PLIKNP--DVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGT 212
Query: 178 VAVLCS 183
           V+V   
Sbjct: 213 VSVFAG 218

>pdb|1OED|C Chain C, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 29/195 (14%)
Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +V   +V+  ++LN+H R   TH +S  ++ +FL+ +P IL MSR  E ++       
Sbjct: 72  MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQN-- 129
Query: 61  XXXXXXXXXXXXXXXXXXXXXNVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
                                +V  I     +  ++S S           G +   T   
Sbjct: 130 -------------DLKLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVTPR- 175
Query: 121 IG-------------PHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLI 167
           IG              H E+   +     I  +I++++   E   +W      +DR+ + 
Sbjct: 176 IGFGNNNENIAASDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMF 235
Query: 168 IFTLFTILATVAVLC 182
           I T   +L T+ +  
Sbjct: 236 IITPVMVLGTIFIFV 250

>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 29/194 (14%)
Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +V   VV+  ++LN+H R   TH +S  ++ +FL+ +P IL MSR  E ++       
Sbjct: 317 MSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRVDEIEQPDWQN-- 374
Query: 61  XXXXXXXXXXXXXXXXXXXXXNVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
                                +V  I     +  ++S S           G +   T   
Sbjct: 375 -------------DLKLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVTPR- 420
Query: 121 IG-------------PHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLI 167
           IG              H E+   +     I  +I++++   E   +W      +DR+ + 
Sbjct: 421 IGFGNNNENIAASDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMF 480
Query: 168 IFTLFTILATVAVL 181
           I T   +L T+ + 
Sbjct: 481 IITPVMVLGTIFIF 494

>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 33/53 (62%)
Query: 131 LKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCS 183
           ++ ++ I + ++ ++E++    +WK+ AMV+D + L +F L  I+ TV+V   
Sbjct: 309 IEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAG 361

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	9e-40
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	3e-38
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	4e-38
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	2e-34
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	1e-32
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	3e-32
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	1e-28
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	2e-26
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	1e-15
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	3e-12
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	1e-08
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	2e-10
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	4e-08
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	5e-10
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	3e-09
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	4e-09
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	3e-08
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	2e-06
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	9e-05
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	8e-04

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score =  140 bits (353), Expect = 9e-40
 Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 14/191 (7%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           MF+    V + +++LN   R  +TH +S  I+ +FL+++P  L M     E+     +  
Sbjct: 290 MFVSLVIVTNCVIVLNVSLRTPNTHSLSEKIKHLFLEFLPKYLGMHLEPSEETPEKPQPR 349

Query: 61  RK-----ALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILH 115
           R+      +K +E  LK+  S+ +     D     R N + S         D   GT + 
Sbjct: 350 RRSSFGIMIKAEEYILKKPRSELMFEEQKDRHGLKRVNKMTS---------DIDIGTTVD 400

Query: 116 ATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTIL 175
                     E+   ++    I    ++++++     +W     V+D+ C  I  L   L
Sbjct: 401 LYKDLANFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSL 460

Query: 176 ATVAVLCSAPH 186
            T+A+  +   
Sbjct: 461 GTLAIFLTGHL 471

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score =  136 bits (343), Expect = 3e-38
 Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 13/190 (6%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +VA SV+ ++++LN HHR+ +TH M  WIR +F++ +P  L + RP            
Sbjct: 312 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTI 371

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
                 +    K                DF      +          S     L+  T  
Sbjct: 372 ISRANDEYFIRKPAG-------------DFVCPVDNARVAVQPERLFSEMKWHLNGLTQP 418

Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
           +   ++L   ++ ++ I ++++   E  ++  DW++ AMV DR+ L IF     + T ++
Sbjct: 419 VTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSI 478

Query: 181 LCSAPHIIVT 190
              A H +  
Sbjct: 479 FLDASHNVPP 488

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score =  136 bits (342), Expect = 4e-38
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 15/192 (7%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +V   VV+  ++LN+H R   TH +S  ++ +FL+ +P IL MSR  E ++       
Sbjct: 317 MSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRVDEIEQPDWQ--- 373

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRHNTL------QSSSHTFLRHDDSGGGTIL 114
                  +L+L+  SS   ++   +  +    + L      +            G G   
Sbjct: 374 ------NDLKLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNN 427

Query: 115 HATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTI 174
               +    H E+   +     I  +I++++   E   +W      +DR+ + I T   +
Sbjct: 428 ENIAASDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMV 487

Query: 175 LATVAVLCSAPH 186
           L T+ +      
Sbjct: 488 LGTIFIFVMGNF 499

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260

 Score =  121 bits (304), Expect = 2e-34
 Identities = 35/186 (18%), Positives = 70/186 (37%), Gaps = 3/186 (1%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +V   +V+  ++LN+H R   TH +S  ++ +FL+ +P IL MSR  E ++       
Sbjct: 72  MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQNDL 131

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
           +     +   +   S      N+    +       +            G G       + 
Sbjct: 132 KLR---RSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNNENIAAS 188

Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
              H E+   +     I  +I++++   E   +W      +DR+ + I T   +L T+ +
Sbjct: 189 DQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFI 248

Query: 181 LCSAPH 186
                 
Sbjct: 249 FVMGNF 254

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260

 Score =  116 bits (292), Expect = 1e-32
 Identities = 34/186 (18%), Positives = 76/186 (40%), Gaps = 4/186 (2%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           MF+    V++ +++LN   R  +TH +S  I+ +FL ++P  L M     E+     +  
Sbjct: 73  MFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEETPEKPQPR 132

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
           R++     ++ +E   K   + ++  +   RH       +      D G    L+   + 
Sbjct: 133 RRSSFGIMIKAEEYILKKPRSELMFEEQKDRHG--LKRVNKMTSDIDIGTTVDLYKDLAN 190

Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
             P  +    ++    I    ++++++     +W     V+D+ C  I  L   + T+A+
Sbjct: 191 FAPEIKSC--VEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAI 248

Query: 181 LCSAPH 186
             +   
Sbjct: 249 FLTGHF 254

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250

 Score =  115 bits (288), Expect = 3e-32
 Identities = 40/189 (21%), Positives = 80/189 (42%), Gaps = 13/189 (6%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +VA SV+ ++++LN HHR+ +TH M  WIR +F++ +P  L + RP            
Sbjct: 72  MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTI 131

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
                 +    K         +   +         +   H             L+  T  
Sbjct: 132 ISRANDEYFIRKPAGDFVCPVDNARVAVQPERLFSEMKWH-------------LNGLTQP 178

Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
           +   ++L   ++ ++ I ++++   E  ++  DW++ AMV DR+ L +F +   + T ++
Sbjct: 179 VTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSI 238

Query: 181 LCSAPHIIV 189
              A H + 
Sbjct: 239 FLDASHNVP 247

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score =  109 bits (273), Expect = 1e-28
 Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 36/184 (19%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M  V SS++ T++++N HHR+  TH M  W+R +F+  +P ++  S              
Sbjct: 306 MIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTMKRAS-------- 357

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
                      KE+    + A+ +DI D                                
Sbjct: 358 -----------KEKQENKIFADDIDISDISGKQVTGEVIFQTPLI--------------- 391

Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
              + ++   ++ ++ I + ++ ++E++    +WK+ AMV+D + L +F L  I+ TV+V
Sbjct: 392 --KNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSV 449

Query: 181 LCSA 184
               
Sbjct: 450 FAGR 453

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227

 Score = 99.9 bits (248), Expect = 2e-26
 Identities = 34/184 (18%), Positives = 73/184 (39%), Gaps = 36/184 (19%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M  V SS++ T++++N HHR+  TH M  W+R +F+  +P ++  S      K       
Sbjct: 72  MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASK------- 124

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
                                         +      +    +        T      + 
Sbjct: 125 -----------------------------EKQENKIFADDIDISDISGKQVTGEVIFQTP 155

Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
           +  + ++   ++ ++ I + ++ ++E++    +WK+ AMV+D + L +F L  I+ TV+V
Sbjct: 156 LIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSV 215

Query: 181 LCSA 184
               
Sbjct: 216 FAGR 219

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRP 48
           M  V  S+V T+ +LN HHR+ +TH            WM  I+ +   
Sbjct: 78  MIFVTLSIVITVFVLNVHHRSPETHTGGGGGIDRIFLWMFIIVCLLGT 125

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 63.0 bits (153), Expect = 3e-12
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 134 LRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIVT 190
           ++ I ++++   E  ++  DW++ AMV DR+ L IF     + T ++   A H +  
Sbjct: 309 IKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPP 365

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSE 50
           M +VA SV+ ++++LN HHR+ +THE    I+ +  Q            +
Sbjct: 279 MILVAFSVILSVVVLNLHHRSPNTHEAVEAIKYIAEQLESASEFDDLKKD 328

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 15/51 (29%), Positives = 31/51 (60%)

Query: 134 LRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSA 184
           ++ I + ++ ++E++    +WK+ AMV+D + L +F L  I+ TV+V    
Sbjct: 312 VKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR 362

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEE 51
           M  V SS++ T++++N HHR+  TH     ++ +    M      S  +EE
Sbjct: 282 MIFVISSIIVTVVVINTHHRSPSTHSAIEGVKYIAE-HMKSDEESSNAAEE 331

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164

 Score = 54.8 bits (132), Expect = 5e-10
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLV-------FLQWMPCILRMSRP 48
           M +V  S+V+++ +LN HHR+  TH        V       FL     +      
Sbjct: 99  MVLVTFSIVTSVCVLNVHHRSPTTHTPRGGGGYVAMVIDRLFLWIFVFVCVFGTI 153

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 9/50 (18%), Positives = 16/50 (32%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSE 50
           MF+    V + +++LN   R  +TH        +           S    
Sbjct: 283 MFVSLVIVTNCVIVLNVSLRTPNTHSCVEACNFIAKSTKEQNDSGSENEN 332

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 134 LRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPH 186
              I    ++++++     +W     V+D+ C  I  L   L T+A+  +   
Sbjct: 313 CNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHL 365

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMP 40
           M +V   VV+  ++LN+H R   TH        +  Q   
Sbjct: 281 MSLVTGVVVNCGIVLNFHFRTPSTHSGIDSTNYIVKQIKE 320

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 134 LRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPH 186
              I  +I++++   E   +W      +DR+ + I T   +L T+ +      
Sbjct: 311 TNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNF 363

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 2/37 (5%)

Query: 1   MFMVASSVVSTILI--LNYHHRNADTHEMSPWIRLVF 35
                 +V+   +   L    + A    ++   R+ F
Sbjct: 267 YLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAF 303

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 5/45 (11%), Positives = 14/45 (31%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRM 45
              + ++++  I   +      +   +    RL F      I  +
Sbjct: 270 YGSIFAAILLIIFAHHRQANGVEDDLLIQRCRLAFPLGFLAIGCV 314

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	100.0
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	100.0
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	100.0
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	100.0
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	100.0
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	100.0
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.98
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.97
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	99.71
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	99.7
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	99.69
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	99.55
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	99.19
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	98.13
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	97.93
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	96.87

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B

Probab=100.00  E-value=1.3e-38  Score=247.70  Aligned_cols=175  Identities=24%  Similarity=0.424  Sum_probs=50.8

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhh-hhhccchhh
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELE-LKERSSKSL   79 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   79 (190)
                      |++|++|++.||+|+|+|||+|.+|+||+|+|++||+++|++|||++|+++...... ...+..  ...+ ...+.+...
T Consensus        72 m~~v~~sl~~tv~Vln~~~r~~~~~~mp~wvr~~~l~~l~~~l~m~~p~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~  148 (250)
T 1oed_B           72 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSK-PTIISR--ANDEYFIRKPAGDF  148 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC-----------------------------------------------------------
T ss_pred             HHHHHHHHHHHhheeeeeccCCCCCCcchHHHHHHHHhhhHHhEecCCCcccccccc-cccccc--ccchhcccCCcccc
Confidence            578899999999999999999999999999999999999999999999753211000 000000  0000 000000000


Q ss_pred             hcccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHH
Q psy11695         80 LANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAM  159 (190)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~  159 (190)
                        + ....+..+..  +.+     ..+.......... .......++++++++++++|++|++++|+++++++|||||||
T Consensus       149 --~-~~~~~~~~~~--~~~-----~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAm  217 (250)
T 1oed_B          149 --V-CPVDNARVAV--QPE-----RLFSEMKWHLNGL-TQPVTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAM  217 (250)
T ss_dssp             ------------------------------------------------------------------------------CH
T ss_pred             --C-CCCCcccccc--ccC-----CCCcccccccccc-ccccccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence              0 0000000000  000     0000000000000 000123468999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695        160 VVDRMCLIIFTLFTILATVAVLCSAPHIIV  189 (190)
Q Consensus       160 VlDRl~l~if~l~~~~~t~~i~~~~p~~~~  189 (190)
                      |+||+|||+|++++++||++||+++|+++.
T Consensus       218 VlDRlfL~iF~i~~i~gT~~I~l~ap~~~~  247 (250)
T 1oed_B          218 VADRLFLYVFFVICSIGTFSIFLDASHNVP  247 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            999999999999999999999999999875

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A

Probab=100.00  E-value=2.8e-38  Score=247.02  Aligned_cols=179  Identities=21%  Similarity=0.344  Sum_probs=50.6

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCcc--chhHHhhhhhh---hhhhh--hhh
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKT--SLTEATRKALK---LKELE--LKE   73 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~--~~~~~~~~~~~---~~~~~--~~~   73 (190)
                      |++|++|++.||+|+|+|||+|.+|+||+|+|++||+++|++|||++|++....  ......+....   ....+  ...
T Consensus        72 m~~v~~s~~~tv~vl~~~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (260)
T 1oed_C           72 MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQNDLKLRRSSSVGYISKAQEYFNI  151 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHheeeeeccCCCCCCccHHHHHHHHHhhhHHhEecCCcccccccccccccccccccccccccchhhccc
Confidence            578999999999999999999999999999999999999999999998754110  00000000000   00000  000


Q ss_pred             ccchhhhcccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhh
Q psy11695         74 RSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITND  153 (190)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~e  153 (190)
                      . +++....  + .....++....  .   +.+.+......... ......++++++++++++|++|++++|+++++++|
T Consensus       152 ~-~~~~~~~--~-~~~~~~~~~~~--~---~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~d  221 (260)
T 1oed_C          152 K-SRSELMF--E-KQSERHGLVPR--V---TPRIGFGNNNENIA-ASDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGN  221 (260)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-ccccccc--c-ccccCCCcccc--c---ccCCCCCccccccc-cccccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            0 0000000  0 00000000000  0   00000000000000 00123468999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695        154 WKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV  189 (190)
Q Consensus       154 Wk~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~  189 (190)
                      |||||||+||+|||+|++++++||++||+++|+++.
T Consensus       222 Wk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~  257 (260)
T 1oed_C          222 WNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNHP  257 (260)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            999999999999999999999999999999998864

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=100.00  E-value=3.1e-37  Score=261.63  Aligned_cols=179  Identities=20%  Similarity=0.330  Sum_probs=81.2

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhh---hhhhhhhhccch
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALK---LKELELKERSSK   77 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~   77 (190)
                      |++|++|++.||+|+|+|||+|.+|+||+|+|++||++||++|||++|+.+.........+....   ....+.....+.
T Consensus       290 m~lv~~Sll~tv~Vlnl~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (488)
T 4aq5_E          290 MFVSLVIVTNCVIVLNVSLRTPNTHSLSEKIKHLFLEFLPKYLGMHLEPSEETPEKPQPRRRSSFGIMIKAEEYILKKPR  369 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSTTTCC------------------------------------------------------
T ss_pred             HHHHHHHHHHHhhEEEEEccCCCCCcCChhHhhhhHhhCcceeEecCCcccccccccccccccccccccccccccccCCc
Confidence            67899999999999999999999999999999999999999999999865321110000000000   000000000000


Q ss_pred             hhhcccCCCCCcccCCCCCCCCCcccccCCCC-CCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHH
Q psy11695         78 SLLANVLDIDDDFRHNTLQSSSHTFLRHDDSG-GGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKF  156 (190)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~  156 (190)
                      +..  .+. ....+++....    . ...++. .+.............+++++++++++||++|++++|+++++++||||
T Consensus       370 ~~~--~~~-~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ia~~~~~~~~~~~~~~dWk~  441 (488)
T 4aq5_E          370 SEL--MFE-EQKDRHGLKRV----N-KMTSDIDIGTTVDLYKDLANFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVL  441 (488)
T ss_dssp             -----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccc--ccc-cccccCccccc----c-cccCccccCCCccccccccccCHHHHHHHHHHHHHHHHHhhhhHHhhhhhcceE
Confidence            000  000 00000000000    0 000000 00000000011124578999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy11695        157 AAMVVDRMCLIIFTLFTILATVAVLCSAPHI  187 (190)
Q Consensus       157 vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~  187 (190)
                      ||||+||+|||+|++++++||++||+++|+.
T Consensus       442 va~V~DR~~l~~f~~~~~~gt~~i~~~~~~~  472 (488)
T 4aq5_E          442 IGKVIDKACFWIALLLFSLGTLAIFLTGHLN  472 (488)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            9999999999999999999999999987754

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1

Probab=100.00  E-value=4.9e-38  Score=245.65  Aligned_cols=179  Identities=21%  Similarity=0.324  Sum_probs=50.4

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccC-CCCCCCccchhHHhhhh-hh---hhhhhhhhcc
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMS-RPSEEDKTSLTEATRKA-LK---LKELELKERS   75 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~-~p~~~~~~~~~~~~~~~-~~---~~~~~~~~~~   75 (190)
                      |++|++|++.||+|+|+|||+|.+|+||+|+|++||+++|++|||+ +|++..+...  ..+.. ..   ....+.....
T Consensus        73 m~~v~~sl~~tv~vln~~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~rp~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  150 (260)
T 1oed_E           73 MFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEETPEKP--QPRRRSSFGIMIKAEEYILKK  150 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred             HHHHHHHHHHHhheeeeeccCCCCCCcchHHHHHHHHhhhHHhEeccCCcccccccc--ccccccccccccccchhhccC
Confidence            5788999999999999999999999999999999999999999999 9865311000  00000 00   0000000000


Q ss_pred             chhhhcccCCCCCcccCCCCCCCCCcccccCCCCCCcc-ccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhH
Q psy11695         76 SKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTI-LHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDW  154 (190)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eW  154 (190)
                      +++...  .+ .....++....     .+...+..++. ...........++++++++++++|++|++++|+++++++||
T Consensus       151 ~~~~~~--~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dW  222 (260)
T 1oed_E          151 PRSELM--FE-EQKDRHGLKRV-----NKMTSDIDIGTTVDLYKDLANFAPEIKSCVEACNFIAKSTKEQNDSGSENENW  222 (260)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccc--cc-cCCcccccccc-----cccccCCCCcccccccccccccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            000000  00 00000000000     00000000000 00000011234689999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695        155 KFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV  189 (190)
Q Consensus       155 k~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~  189 (190)
                      ||||||+||+|||+|++++++||++||+++|+++.
T Consensus       223 k~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~  257 (260)
T 1oed_E          223 VLIGKVIDKACFWIALLLFSIGTLAIFLTGHFNQV  257 (260)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            99999999999999999999999999999998864

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=100.00  E-value=1.3e-36  Score=259.63  Aligned_cols=178  Identities=23%  Similarity=0.326  Sum_probs=81.8

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccC-CCCCCCccchhHH-hhhhhh----hhhhhhhhc
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMS-RPSEEDKTSLTEA-TRKALK----LKELELKER   74 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~-~p~~~~~~~~~~~-~~~~~~----~~~~~~~~~   74 (190)
                      |++|++|++.||+|+|+|||+|.+|+||+|+|++||++||++|||+ +|+.+........ .+....    ....+....
T Consensus       317 m~lv~lSll~tviVlnl~~r~~~~~~mp~wvr~~fl~~l~~~l~m~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (522)
T 4aq5_C          317 MSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRVDEIEQPDWQNDLKLRRSSSVGYISKAQEYFNI  396 (522)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSSCC-------------------------------------------------------
T ss_pred             HHHHHHHHHHHheEEEEEccCCCCCCCChHHHHHHHHhCchheEEecCCCcccccccccccccccccccccccccccccc
Confidence            6789999999999999999999999999999999999999999999 9865311000000 000000    000000000


Q ss_pred             cchhhhcccCCCCCcccCCCCCCCCCcccccCCCC-CCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhh
Q psy11695         75 SSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSG-GGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITND  153 (190)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~e  153 (190)
                      .+.+..  .+. ....+++..       .+...+. .+.............+++++++++++||++|++++|+++++++|
T Consensus       397 ~~~~~~--~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ia~~~~~~~~~~~~~~d  466 (522)
T 4aq5_C          397 KSRSEL--MFE-KQSERHGLV-------PRVTPRIGFGNNNENIAASDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGN  466 (522)
T ss_dssp             -------------------------------------------------------CCTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccc--ccc-cccccCccc-------ccccCccccCCcccccccccccCHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Confidence            000000  000 000000000       0000000 00000000011123568899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Q psy11695        154 WKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHII  188 (190)
Q Consensus       154 Wk~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~  188 (190)
                      |||||||+||+|||+|++++++||++||+++|+..
T Consensus       467 Wk~va~V~DRl~l~~f~~~~~~gt~~i~~~~~~~~  501 (522)
T 4aq5_C          467 WNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNR  501 (522)
T ss_dssp             TTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             eeEeeeeHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            99999999999999999999999999999988654

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B

Probab=100.00  E-value=6.4e-36  Score=229.43  Aligned_cols=144  Identities=26%  Similarity=0.534  Sum_probs=45.3

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccC---CCCCCCccchhHHhhhhhhhhhhhhhhccch
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMS---RPSEEDKTSLTEATRKALKLKELELKERSSK   77 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (190)
                      |++|++|++.|++|+|+|||+|.+|+||+|+|++||+++|++|||+   +|+.+...      +... ..  +... .  
T Consensus        72 m~~v~~sl~~tv~vln~~~r~~~~~~mp~wvr~~~l~~l~~~l~m~~~~rp~~~~~~------~~~~-~~--~~~~-~--  139 (227)
T 1oed_A           72 MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASKEKQE------NKIF-AD--DIDI-S--  139 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCCcchHHHHHHHHhccHhheeccccCCcccccc------cccc-cc--cccc-c--
Confidence            5788999999999999999999999999999999999999999996   66432110      0000 00  0000 0  


Q ss_pred             hhhcccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHH
Q psy11695         78 SLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFA  157 (190)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~v  157 (190)
                                 ..    .+...  .... .+     +    ......++++++++++++|++|++++|++++.++|||+|
T Consensus       140 -----------~~----~~~~~--~~~~-~~-----~----~~~~~~~~l~~~~~~v~~I~~~~~~~~~~~~~~~dWk~v  192 (227)
T 1oed_A          140 -----------DI----SGKQV--TGEV-IF-----Q----TPLIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYV  192 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------cc----CCCCC--CCCC-Cc-----c----ccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence                       00    00000  0000 00     0    001123578999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11695        158 AMVVDRMCLIIFTLFTILATVAVLCS  183 (190)
Q Consensus       158 A~VlDRl~l~if~l~~~~~t~~i~~~  183 (190)
                      |+|+||+|||+|++++++||++||++
T Consensus       193 A~VlDRl~l~iF~~~~i~gT~~i~~~  218 (227)
T 1oed_A          193 AMVIDHILLCVFMLICIIGTVSVFAG  218 (227)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999987

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.98  E-value=3.7e-35  Score=249.16  Aligned_cols=172  Identities=24%  Similarity=0.441  Sum_probs=80.9

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhhhhhccchhhh
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLL   80 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (190)
                      |++|++|++.||+|+|+|||+|.+|+||+|+|++||++||++|||++|+........  . ........+.......+..
T Consensus       312 m~~v~lsll~tv~Vl~l~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~  388 (493)
T 4aq5_B          312 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSK--P-TIISRANDEYFIRKPAGDF  388 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTTC-------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhheeeeccCCCCCcCCHHHHHHHHHhCcceEEecCCccccccccc--c-cccccccccccccCCCccc
Confidence            578899999999999999999999999999999999999999999998653210000  0 0000000000000000000


Q ss_pred             c-ccCCC-CCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHH
Q psy11695         81 A-NVLDI-DDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAA  158 (190)
Q Consensus        81 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA  158 (190)
                      . ..... +...+++..+    ...+.  . .+..    .. ....++++++++++++|++|++++++++++++||||||
T Consensus       389 ~~~~~~~~~~~~~~~~~~----~~~~~--~-~~~~----~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~dWk~va  456 (493)
T 4aq5_B          389 VCPVDNARVAVQPERLFS----EMKWH--L-NGLT----QP-VTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVA  456 (493)
T ss_dssp             --------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred             cccccccccccccccccc----ccccc--c-cCcc----cc-cccCHHHHHHHHHHHHHHHHHHhhhHhhhhhcceEEEE
Confidence            0 00000 0000000000    00000  0 0000    01 13457899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q psy11695        159 MVVDRMCLIIFTLFTILATVAVLCSAPHI  187 (190)
Q Consensus       159 ~VlDRl~l~if~l~~~~~t~~i~~~~p~~  187 (190)
                      ||+||+|||+|++++++||++||+++|+.
T Consensus       457 ~V~DR~~l~~f~~~~~~gt~~i~~~~~~~  485 (493)
T 4aq5_B          457 MVADRLFLYIFITMCSIGTFSIFLDASHN  485 (493)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             EehhHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999987754

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.97  E-value=1.6e-34  Score=243.41  Aligned_cols=147  Identities=24%  Similarity=0.483  Sum_probs=80.1

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccc---cCCCCCCCccchhHHhhhhhhhhhhhhhhccch
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILR---MSRPSEEDKTSLTEATRKALKLKELELKERSSK   77 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~---m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (190)
                      |++|++|++.||+|+|+|||+|.+|+||+|+|++||+++|++||   |++|+.+....     +..    ..+..  .  
T Consensus       306 m~~v~~sll~tv~Vl~l~~r~~~~~~mp~w~r~~~l~~l~~~l~~~~~~~p~~~~~~~-----~~~----~~~~~--~--  372 (461)
T 4aq5_A          306 MIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTMKRASKEKQEN-----KIF----ADDID--I--  372 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTTC-------------------------------------------------------
T ss_pred             HHHHHHHHHHHhhheeeeccCCCCCCCCHHHHHHHHHhhHHHhhhhhcCCCCcccccc-----cCC----ccccC--c--
Confidence            57899999999999999999999999999999999999999999   99986431100     000    00000  0  


Q ss_pred             hhhcccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHH
Q psy11695         78 SLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFA  157 (190)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~v  157 (190)
                                    +...+....  ..     ....     ......++++++++++++|++|+++++++++.++|||||
T Consensus       373 --------------~~~~~~~~~--~~-----~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~dWk~v  426 (461)
T 4aq5_A          373 --------------SDISGKQVT--GE-----VIFQ-----TPLIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYV  426 (461)
T ss_dssp             ---------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             --------------ccccCCCCC--Cc-----cccc-----cccccCHHHHHHHHHHHHHHHHHHhhHHHHhhhhhheee
Confidence                          000000000  00     0000     001234688999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy11695        158 AMVVDRMCLIIFTLFTILATVAVLCSAPH  186 (190)
Q Consensus       158 A~VlDRl~l~if~l~~~~~t~~i~~~~p~  186 (190)
                      |+|+||+|||+|++++++||++||++++.
T Consensus       427 a~v~Dr~~l~~f~~~~~~gt~~i~~~~~~  455 (461)
T 4aq5_A          427 AMVIDHILLCVFMLICIIGTVSVFAGRLI  455 (461)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998754

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.71  E-value=6.5e-19  Score=144.82  Aligned_cols=57  Identities=26%  Similarity=0.603  Sum_probs=52.4

Q ss_pred             HHHHHHHHhhhhhHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695        133 ELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV  189 (190)
Q Consensus       133 ~l~~I~~~~~~~~~~~~~~~eWk~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~  189 (190)
                      ++++|++++++++++++.++||+++|+|+||+|||+|++++++||++||+++|++++
T Consensus       308 ~~~~i~~~~~~~~~~~~~~~~W~~~a~v~Dr~~~~~f~~~~~~~t~~i~~~~~~~~~  364 (370)
T 2bg9_B          308 AIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVP  364 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSG
T ss_pred             hHHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            456778888899999999999999999999999999999999999999999998764

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.70  E-value=8.3e-19  Score=144.15  Aligned_cols=57  Identities=18%  Similarity=0.369  Sum_probs=52.1

Q ss_pred             HHHHHHHHhhhhhHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695        133 ELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV  189 (190)
Q Consensus       133 ~l~~I~~~~~~~~~~~~~~~eWk~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~  189 (190)
                      ++++|++++++++++++.++||+++|+|+||+|||+|++++++||++||+++|+++.
T Consensus       310 ~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~~~~i~~~~~~~~~  366 (369)
T 2bg9_C          310 STNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRP  366 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            445677888889999999999999999999999999999999999999999998875

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.69  E-value=1.9e-18  Score=142.09  Aligned_cols=57  Identities=19%  Similarity=0.399  Sum_probs=52.1

Q ss_pred             HHHHHHHHhhhhhHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695        133 ELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV  189 (190)
Q Consensus       133 ~l~~I~~~~~~~~~~~~~~~eWk~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~  189 (190)
                      ++++|++++++++++++.++||+++|+|+||+|||+|.+++++||++||+++|++++
T Consensus       312 ~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~t~~i~~~~~~~~~  368 (370)
T 2bg9_E          312 ACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHLNQV  368 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC
Confidence            456677888888899999999999999999999999999999999999999998765

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.55  E-value=1.8e-16  Score=130.34  Aligned_cols=52  Identities=29%  Similarity=0.711  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhhhhhHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11695        132 KELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAVLCS  183 (190)
Q Consensus       132 ~~l~~I~~~~~~~~~~~~~~~eWk~vA~VlDRl~l~if~l~~~~~t~~i~~~  183 (190)
                      +++++|+++++++++.++.++||+++|+|+||+|||+|.+++++||++||++
T Consensus       310 ~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~t~~i~~~  361 (370)
T 2bg9_A          310 EGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAG  361 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3467888899999999999999999999999999999999999999999975

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A

Probab=99.19  E-value=1.5e-12  Score=94.73  Aligned_cols=34  Identities=29%  Similarity=0.590  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695        155 KFAAMVVDRMCLIIFTLFTILATVAVLCSAPHIIV  189 (190)
Q Consensus       155 k~vA~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~  189 (190)
                      |++|+|+||+|||+|.+++++||++|+++ |+++.
T Consensus       130 k~~a~v~Dr~~l~~f~~~~~~~t~~i~~~-p~~~~  163 (164)
T 2ksr_A          130 GYVAMVIDRLFLWIFVFVCVFGTIGMFLQ-PLFQN  163 (164)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHheec-ccccc
Confidence            99999999999999999999999999999 88763

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}

Probab=98.13  E-value=8.8e-08  Score=67.62  Aligned_cols=41  Identities=37%  Similarity=0.515  Sum_probs=35.9

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCC-CHHHHHHHhhhccc
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEM-SPWIRLVFLQWMPC   41 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~m-p~WvR~l~L~~lp~   41 (190)
                      |++|++|++.|++|+|+|||+|++|+| |.|++++||-..+-
T Consensus        78 ~~~v~~sl~~tv~V~~~~~r~~~~~~mp~~~~dr~~lwif~~  119 (137)
T 2lly_A           78 MIFVTLSIVITVFVLNVHHRSPETHTGGGGGIDRIFLWMFII  119 (137)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSCSSCCSSCSSSHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhHHhcCCccCccchHHHHHHHHHHHHH
Confidence            467889999999999999999999999 58999999955444

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}

Probab=97.93  E-value=5.8e-06  Score=58.23  Aligned_cols=31  Identities=26%  Similarity=0.466  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q psy11695        158 AMVVDRMCLIIFTLFTILATVAVLCSAPHIIV  189 (190)
Q Consensus       158 A~VlDRl~l~if~l~~~~~t~~i~~~~p~~~~  189 (190)
                      ++|+||+|+|+|.+++++||++|+++ |++.+
T Consensus       106 ~~~~dr~~lwif~~~~~~gt~~i~~~-p~~~~  136 (137)
T 2lly_A          106 GGGIDRIFLWMFIIVCLLGTVGLFLP-PWLAG  136 (137)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHCC-STTTC
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhheec-ccccC
Confidence            48999999999999999999999999 98764

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=96.87  E-value=9e-06  Score=65.89  Aligned_cols=45  Identities=11%  Similarity=0.258  Sum_probs=41.0

Q ss_pred             CeEeeehhheeeeEEeeecCCCCC-CCCCHHHHHHHhhhccccccc
Q psy11695          1 MFMVASSVVSTILILNYHHRNADT-HEMSPWIRLVFLQWMPCILRM   45 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~-~~mp~WvR~l~L~~lp~lL~m   45 (190)
                      |++|.+|++.+++|.++++|++.+ ++||+|++++++.++|.++|+
T Consensus       284 ~~~v~~slle~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~i  329 (347)
T 3rhw_A          284 MTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFV  329 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCcchhhhhhHHHHHHHHHHHHHHHHH
Confidence            467889999999999999998766 789999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1oedb_	250	f.36.1.1 (B:) Acetylcholine receptor protein, beta	2e-32
d1oede_	260	f.36.1.1 (E:) Acetylcholine receptor protein, gamm	2e-30
d1oedc_	260	f.36.1.1 (C:) Acetylcholine receptor protein, delt	4e-30
d1oeda_	227	f.36.1.1 (A:) Acetylcholine receptor protein, alph	3e-25

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score =  114 bits (286), Expect = 2e-32
 Identities = 43/186 (23%), Positives = 86/186 (46%), Gaps = 13/186 (6%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M +VA SV+ ++++LN HHR+ +TH M  WIR +F++ +P  L + RP        ++ T
Sbjct: 72  MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPD-SKPT 130

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
             +    E  +++ +             DF      +          S     L+  T  
Sbjct: 131 IISRANDEYFIRKPAG------------DFVCPVDNARVAVQPERLFSEMKWHLNGLTQP 178

Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
           +   ++L   ++ ++ I ++++   E  ++  DW++ AMV DR+ L +F +   + T ++
Sbjct: 179 VTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSI 238

Query: 181 LCSAPH 186
              A H
Sbjct: 239 FLDASH 244

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score =  109 bits (273), Expect = 2e-30
 Identities = 35/186 (18%), Positives = 77/186 (41%), Gaps = 4/186 (2%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           MF+    V++ +++LN   R  +TH +S  I+ +FL ++P  L M     E+     +  
Sbjct: 73  MFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEETPEKPQPR 132

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
           R++     ++ +E   K   + ++  +   RH   + +  T     D   GT +      
Sbjct: 133 RRSSFGIMIKAEEYILKKPRSELMFEEQKDRHGLKRVNKMT----SDIDIGTTVDLYKDL 188

Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
                E+   ++    I    ++++++     +W     V+D+ C  I  L   + T+A+
Sbjct: 189 ANFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAI 248

Query: 181 LCSAPH 186
             +   
Sbjct: 249 FLTGHF 254

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score =  109 bits (272), Expect = 4e-30
 Identities = 37/187 (19%), Positives = 76/187 (40%), Gaps = 9/187 (4%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSL---T 57
           M +V   +V+  ++LN+H R   TH +S  ++ +FL+ +P IL MSR  E ++       
Sbjct: 72  MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQNDL 131

Query: 58  EATRKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHAT 117
           +  R +      + +E  +    + ++      RH  +   +         G G      
Sbjct: 132 KLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVT------PRIGFGNNNENI 185

Query: 118 TSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILAT 177
            +    H E+   +     I  +I++++   E   +W      +DR+ + I T   +L T
Sbjct: 186 AASDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGT 245

Query: 178 VAVLCSA 184
           + +    
Sbjct: 246 IFIFVMG 252

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 95.6 bits (237), Expect = 3e-25
 Identities = 38/183 (20%), Positives = 78/183 (42%), Gaps = 36/183 (19%)

Query: 1   MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEAT 60
           M  V SS++ T++++N HHR+  TH M  W+R +F+  +P ++  S      K       
Sbjct: 72  MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASK------- 124

Query: 61  RKALKLKELELKERSSKSLLANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSC 120
                       E+    + A+ +DI D                              + 
Sbjct: 125 ------------EKQENKIFADDIDISDISGKQVTGEVIFQ-----------------TP 155

Query: 121 IGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMVVDRMCLIIFTLFTILATVAV 180
           +  + ++   ++ ++ I + ++ ++E++    +WK+ AMV+D + L +F L  I+ TV+V
Sbjct: 156 LIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSV 215

Query: 181 LCS 183
              
Sbjct: 216 FAG 218

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1oedb_	250	Acetylcholine receptor protein, beta chain {Marble	99.97
d1oedc_	260	Acetylcholine receptor protein, delta chain {Marbl	99.97
d1oede_	260	Acetylcholine receptor protein, gamma chain {Marbl	99.94
d1oeda_	227	Acetylcholine receptor protein, alpha chain {Marbl	99.89

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.97  E-value=5.8e-34  Score=221.12  Aligned_cols=175  Identities=23%  Similarity=0.442  Sum_probs=48.9

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhhhhhccchhhh
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLL   80 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (190)
                      |+++++|++.|++|+|+|||++.+++||+|+|++||+++|+++||++|................ ..........     
T Consensus        72 ~~~~~~~~~~~~~v~~~~~~~~~~~p~P~wvR~lfL~~la~ll~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----  145 (250)
T d1oedb_          72 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTIISRA-NDEYFIRKPA-----  145 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC-----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhheeeeccCcccCCcchHHHHHHHHhhhHHhcccCCCCcccccccccccccc-cccccccCCC-----
Confidence            4678999999999999999999999999999999999999999999876543221110000000 0000000000     


Q ss_pred             cccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHHH
Q psy11695         81 ANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMV  160 (190)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~V  160 (190)
                      .+........+.......   ...   . .........+......+++++.+++++|++++++++++++.++||+++|+|
T Consensus       146 ~~~~~~~~~~~~~~~~~~---~~~---~-~~~~~~~~~~~~~~~~~~~~i~~~v~~i~~~~~~~~~~~~~~~EW~~vA~V  218 (250)
T d1oedb_         146 GDFVCPVDNARVAVQPER---LFS---E-MKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMV  218 (250)
T ss_dssp             -----------------------------------------------------------------------------CHH
T ss_pred             CCCCCCCCccccCCCCcc---ccc---c-ccCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            000000000000000000   000   0 000000000111223567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCccc
Q psy11695        161 VDRMCLIIFTLFTILATVAVLCSAPHII  188 (190)
Q Consensus       161 lDRl~l~if~l~~~~~t~~i~~~~p~~~  188 (190)
                      +||+|||+|+++++++|++||+++|+..
T Consensus       219 lDRlfl~lF~l~~vi~t~~i~l~ap~~~  246 (250)
T d1oedb_         219 ADRLFLYVFFVICSIGTFSIFLDASHNV  246 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence            9999999999999999999999999753

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.97  E-value=1.5e-33  Score=219.70  Aligned_cols=177  Identities=21%  Similarity=0.347  Sum_probs=45.7

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHH--hhhhhhhhhhhhhhccchh
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEA--TRKALKLKELELKERSSKS   78 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   78 (190)
                      |++|++|++.|++|+|+|||++.+++||+|+|++||+++|+++||+++...........  .++.... ...........
T Consensus        72 ~~~v~~s~~~t~~Vl~~~~~~~~~~~~p~w~R~~~l~~l~~~l~m~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  150 (260)
T d1oedc_          72 MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQNDLKLRRSSSV-GYISKAQEYFN  150 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhheeeeecccccCccchHHHHHHHHhccHHHccccccccccccccccccccccccc-cccCCcccccC
Confidence            57899999999999999999999999999999999999999999998754322111000  0000000 00000000000


Q ss_pred             hhc--ccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHH
Q psy11695         79 LLA--NVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKF  156 (190)
Q Consensus        79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~  156 (190)
                      ...  ..........++..+..   ....  . .....+.........++++++.+++++|+++++++++++++++|||+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~---~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~v~~i~~~~~~~~~~~~~~~EWk~  224 (260)
T d1oedc_         151 IKSRSELMFEKQSERHGLVPRV---TPRI--G-FGNNNENIAASDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNL  224 (260)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCcccccccccccCCCCCCC---CCCC--C-CCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            000  00000000000000000   0000  0 00000000111233457889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11695        157 AAMVVDRMCLIIFTLFTILATVAVLCSA  184 (190)
Q Consensus       157 vA~VlDRl~l~if~l~~~~~t~~i~~~~  184 (190)
                      ||+|+||+|||+|+++++++|+++|+++
T Consensus       225 vA~ViDRlfl~lF~i~~vi~ti~ifl~~  252 (260)
T d1oedc_         225 VGQTIDRLSMFIITPVMVLGTIFIFVMG  252 (260)
T ss_dssp             -CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999874

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.94  E-value=5.3e-30  Score=199.69  Aligned_cols=180  Identities=19%  Similarity=0.298  Sum_probs=45.6

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhhhhhccchhhh
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLL   80 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (190)
                      |++|++|++.|++|+|+|||++.+++||+|+|++|++++|+++||+++................................
T Consensus        73 ~~~v~~sl~~t~iVl~~~~~~~~~~~~p~~~r~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (260)
T d1oede_          73 MFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEETPEKPQPRRRSSFGIMIKAEEYILKKPR  152 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHheeeEEccCCCCCCCcchhHHHHhhhCCceeeecCCccccccccCCCccccccccccccccccccCCC
Confidence            56789999999999999999999999999999999999999999998754322111100000000000000000000000


Q ss_pred             cccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHHH
Q psy11695         81 ANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMV  160 (190)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~V  160 (190)
                      .+........+++.....   ....+...... ...........++++++.+++++|++++++++++++.++||++||+|
T Consensus       153 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~eW~~vA~v  228 (260)
T d1oede_         153 SELMFEEQKDRHGLKRVN---KMTSDIDIGTT-VDLYKDLANFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKV  228 (260)
T ss_dssp             -----------------------------------------------------------------------------CCH
T ss_pred             CCccccccccccccccCC---CCCCCCCCCCC-cccccchhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            000000000000000000   00000000000 00000112234567889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcC
Q psy11695        161 VDRMCLIIFTLFTILATVAVLCSA  184 (190)
Q Consensus       161 lDRl~l~if~l~~~~~t~~i~~~~  184 (190)
                      +||+|||+|.++++++|++||+++
T Consensus       229 iDR~~l~vF~~~~~i~t~~i~l~~  252 (260)
T d1oede_         229 IDKACFWIALLLFSIGTLAIFLTG  252 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999875

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.89  E-value=4.4e-26  Score=174.09  Aligned_cols=147  Identities=24%  Similarity=0.529  Sum_probs=44.3

Q ss_pred             CeEeeehhheeeeEEeeecCCCCCCCCCHHHHHHHhhhcccccccCCCCCCCccchhHHhhhhhhhhhhhhhhccchhhh
Q psy11695          1 MFMVASSVVSTILILNYHHRNADTHEMSPWIRLVFLQWMPCILRMSRPSEEDKTSLTEATRKALKLKELELKERSSKSLL   80 (190)
Q Consensus         1 MvlVtlSiv~TV~VlN~hhr~p~~~~mp~WvR~l~L~~lp~lL~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (190)
                      |+++++|++.|++|+|+|||++..+++|+|+|++|++++|+++|++.+....+...    .+..      .         
T Consensus        72 ~~~v~~sli~tiiV~~l~~~~~~~~~~p~w~r~~~~~~l~~~l~~~~~~~~~~~~~----~~~~------~---------  132 (227)
T d1oeda_          72 MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASKEKQ----ENKI------F---------  132 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhheeccCCCCCCCchHHHHHHHHhhhHHhccCCcCccccccc----cccc------c---------
Confidence            46789999999999999999999999999999999999999999987654321100    0000      0         


Q ss_pred             cccCCCCCcccCCCCCCCCCcccccCCCCCCccccCccCCCCCcHHHHHHHHHHHHHHHHhhhhhHHhhchhhHHHHHHH
Q psy11695         81 ANVLDIDDDFRHNTLQSSSHTFLRHDDSGGGTILHATTSCIGPHRELTLILKELRVITDKIQKEDEAAEITNDWKFAAMV  160 (190)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~~~~~~~~~eWk~vA~V  160 (190)
                      .+..+..    . ..+....      +  ....    .......++.+.+.++++.+++++++++++++.++||+++|.|
T Consensus       133 ~~~~~~~----~-~~~~~~~------~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eW~~vA~v  195 (227)
T d1oeda_         133 ADDIDIS----D-ISGKQVT------G--EVIF----QTPLIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMV  195 (227)
T ss_dssp             -----------------------------------------------------------------------------CCH
T ss_pred             CCCCCcc----c-cCCCCCC------C--cccc----CCccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            0000000    0 0000000      0  0000    0011123456778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Q psy11695        161 VDRMCLIIFTLFTILATVAVLCS  183 (190)
Q Consensus       161 lDRl~l~if~l~~~~~t~~i~~~  183 (190)
                      +||+||++|.++++++++++|+.
T Consensus       196 iDRi~~~~F~l~~ii~~i~if~~  218 (227)
T d1oeda_         196 IDHILLCVFMLICIIGTVSVFAG  218 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999974