Psyllid ID: psy11712

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVGK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHcccccEEcccccccccccccccccccccccccccEEEEEEEccccccccEEEEEEEEEEcccccEEEEEccccccccEEEEccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccEEcccccccccccccccccccccEcccccEEEEEEEccccccccEEEEEEEEEcccccEEEEEEcccccccEEEEccccEEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MRKSAYMKMLKSSahtlplwvgkpgqkpaalvgaipadpshianRGDMVAALVRNvednednwILAEVVNYnastrtyevididdvqkgphqlsrkqiiplptkranpetepealfpigsvgk
Flexible Loop (DISEMBL)
MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDiddvqkgphqlsrkqiiplptkranpetepealfpigsvgk
Low Complexity Region (SEG)
MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVGK
Disordered region (IsUnstruct)
***************TLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDV*************************************
Disordered Region (DISOPRED)
**KSAYMKMLKSSAHTLPLWVGKPGQK*********A****IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIG****
Disordered Region (DISEMBL)
**********KSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVGK
Disordered Region (DISPRO)
*RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRAN****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
Q9DA08	293	SAGA-associated factor 29	yes	N/A	0.934	0.392	0.586	2e-31
P0C606	293	SAGA-associated factor 29	yes	N/A	0.934	0.392	0.586	2e-31
Q96ES7	293	SAGA-associated factor 29	yes	N/A	0.934	0.392	0.568	4e-31
Q5ZL38	293	SAGA-associated factor 29	yes	N/A	0.934	0.392	0.551	6e-30

>sp|Q9DA08|SGF29_MOUSE SAGA-associated factor 29 homolog OS=Mus musculus GN=Ccdc101 PE=2 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/116 (58%), Positives = 84/116 (72%), Gaps = 1/116 (0%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
           MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A  GD VAA V+ VE +E
Sbjct: 114 MRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAKPGDKVAARVKAVEGDE 173

Query: 61  DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
             WILAEVV+Y+ +T  YEV DID+  K  H LSR++IIPLP  +ANPET+PEALF
Sbjct: 174 -QWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRIIPLPQWKANPETDPEALF 228

Involved in transcriptional regulation, through association with histone acetyltransferase (HAT) SAGA-type complexes like the TFTC-HAT, ATAC or STAGA complexes. Specifically recognizes and binds methylated 'Lys-4' of histone H3 (H3K4me), with a preference for trimethylated form (H3K4me3). In the SAGA-type complexes, required to recruit complexes to H3K4me. May be involved in MYC-mediated oncogenic transformation.
Mus musculus (taxid: 10090)

>sp|P0C606|SGF29_RAT SAGA-associated factor 29 homolog OS=Rattus norvegicus GN=Ccdc101 PE=1 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/116 (58%), Positives = 84/116 (72%), Gaps = 1/116 (0%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
           MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A  GD VAA V+ VE +E
Sbjct: 114 MRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAKPGDKVAARVKAVEGDE 173

Query: 61  DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
             WILAEVV+Y+ +T  YEV DID+  K  H LSR++IIPLP  +ANPET+PEALF
Sbjct: 174 -QWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRIIPLPQWKANPETDPEALF 228

Involved in transcriptional regulation, through association with histone acetyltransferase (HAT) SAGA-type complexes like the TFTC-HAT, ATAC or STAGA complexes. Specifically recognizes and binds methylated 'Lys-4' of histone H3 (H3K4me), with a preference for trimethylated form (H3K4me3). In the SAGA-type complexes, required to recruit complexes to H3K4me. May be involved in MYC-mediated oncogenic transformation.

Rattus norvegicus (taxid: 10116)

>sp|Q96ES7|SGF29_HUMAN SAGA-associated factor 29 homolog OS=Homo sapiens GN=CCDC101 PE=1 SV=1

 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/116 (56%), Positives = 84/116 (72%), Gaps = 1/116 (0%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
           MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A  GD VAA V+ V D +
Sbjct: 114 MRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAV-DGD 172

Query: 61  DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
           + WILAEVV+Y+ +T  YEV DID+  K  H LSR+++IPLP  +ANPET+PEALF
Sbjct: 173 EQWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALF 228

Involved in transcriptional regulation, through association with histone acetyltransferase (HAT) SAGA-type complexes like the TFTC-HAT, ATAC or STAGA complexes. Specifically recognizes and binds methylated 'Lys-4' of histone H3 (H3K4me), with a preference for trimethylated form (H3K4me3). In the SAGA-type complexes, required to recruit complexes to H3K4me. May be involved in MYC-mediated oncogenic transformation.

Homo sapiens (taxid: 9606)

>sp|Q5ZL38|SGF29_CHICK SAGA-associated factor 29 homolog OS=Gallus gallus GN=CCDC101 PE=2 SV=1

 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 83/116 (71%), Gaps = 1/116 (0%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
           MR+   M +L+ SA TLPLW+GKPG KP  L GA+PA   ++A  GD VAA V+ V D +
Sbjct: 114 MRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAMPAAGDYVAKPGDKVAARVKAV-DGD 172

Query: 61  DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
           + WILAEVV+Y+ +   YEV DID+  K  H LSR+++IPLP  +ANPET+PEALF
Sbjct: 173 EQWILAEVVSYSHAANKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALF 228

Involved in transcriptional regulation, through association with histone acetyltransferase (HAT) SAGA-type complexes. Specifically recognizes and binds methylated 'Lys-4' of histone H3 (H3K4me), with a preference for the trimethylated form (H3K4me3). In the SAGA-type complexes, required to recruit complexes to H3K4me.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
48095098	293	PREDICTED: SAGA-associated factor 29 hom	0.975	0.409	0.622	1e-35
242004474	289	conserved hypothetical protein [Pediculu	0.975	0.415	0.603	2e-35
383852005	293	PREDICTED: SAGA-associated factor 29 hom	0.975	0.409	0.614	3e-35
321478380	287	hypothetical protein DAPPUDRAFT_190655 [	0.967	0.414	0.591	4e-35
307193718	295	SAGA-associated factor 29-like protein [	0.983	0.410	0.617	1e-34
340710980	291	PREDICTED: SAGA-associated factor 29 hom	0.967	0.408	0.606	2e-34
158292592	288	AGAP005116-PA [Anopheles gambiae str. PE	0.975	0.416	0.611	5e-34
307189508	293	SAGA-associated factor 29-like protein [	0.975	0.409	0.606	6e-34
332026007	373	SAGA-associated factor 29-like protein [	0.975	0.321	0.606	4e-33
345495710	293	PREDICTED: SAGA-associated factor 29 hom	0.975	0.409	0.590	6e-33

>gi|48095098|ref|XP_392238.1| PREDICTED: SAGA-associated factor 29 homolog [Apis mellifera] gi|380014667|ref|XP_003691344.1| PREDICTED: SAGA-associated factor 29 homolog [Apis florea]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/122 (62%), Positives = 95/122 (77%), Gaps = 2/122 (1%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGK-PGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDN 59
           +R+ A MKML S+A TLPL+VGK PG KP  L GAIPA+P++IA  GDMVAALV+  E+ 
Sbjct: 109 IRRGALMKMLLSTAQTLPLYVGKTPGAKPPPLCGAIPAEPTYIAKMGDMVAALVKGSEE- 167

Query: 60  EDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIG 119
           E+NWILAEVV +N +T  YEV DID+ QK  H LSR++++PLP  RANPET+P ALFP G
Sbjct: 168 EENWILAEVVQFNPTTNKYEVDDIDEEQKDRHTLSRRRVVPLPLMRANPETDPHALFPKG 227

Query: 120 SV 121
           S+
Sbjct: 228 SI 229

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004474|ref|XP_002423108.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506054|gb|EEB10370.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 91/121 (75%), Gaps = 1/121 (0%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
           +R+   MKML+ SA TLPLWVGKP +K  AL GA+PAD  +IA  GDMVAALV+   D E
Sbjct: 107 IRRGTLMKMLQGSAQTLPLWVGKPDEKAPALCGAVPADAFYIAKPGDMVAALVKGA-DEE 165

Query: 61  DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIGS 120
           +NWILAEVV +N S+  YEV DID+ QK  H LS+++++PLP  RANPET+P ALFP GS
Sbjct: 166 ENWILAEVVQFNTSSNKYEVDDIDEEQKDRHILSKRRVVPLPLMRANPETDPHALFPKGS 225

Query: 121 V 121
           +
Sbjct: 226 I 226

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852005|ref|XP_003701521.1| PREDICTED: SAGA-associated factor 29 homolog [Megachile rotundata]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 95/122 (77%), Gaps = 2/122 (1%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGK-PGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDN 59
           +R+ A MKML S+A TLPL+VGK PG KP  L GAI A+P++IA  GDMVAALV+  E+ 
Sbjct: 109 IRRGALMKMLLSTAQTLPLYVGKTPGAKPPPLCGAISAEPTYIAKMGDMVAALVKGSEE- 167

Query: 60  EDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIG 119
           E+NWILAEVV +N++T  YEV DID+ QK  H LSR++++PLP  RANPET+P ALFP G
Sbjct: 168 EENWILAEVVQFNSATNKYEVDDIDEEQKDRHTLSRRRVVPLPLMRANPETDPHALFPKG 227

Query: 120 SV 121
           S+
Sbjct: 228 SI 229

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478380|gb|EFX89337.1| hypothetical protein DAPPUDRAFT_190655 [Daphnia pulex]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 94/120 (78%), Gaps = 1/120 (0%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
           +R+ A MKML  +A TLPLW+ K GQ+P AL GA+PADP+++A  GD+VAALV++  D +
Sbjct: 109 IRRGALMKMLLVTAQTLPLWISKSGQQPPALCGAVPADPTYVAKLGDIVAALVKST-DGD 167

Query: 61  DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIGS 120
           +NWILAEVV Y AS+  YEV DID+ QK  H LS++++IPLP  RANPET+P+ALFP G+
Sbjct: 168 ENWILAEVVQYLASSGRYEVDDIDEEQKERHTLSKRRVIPLPLMRANPETDPDALFPKGA 227

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193718|gb|EFN76400.1| SAGA-associated factor 29-like protein [Harpegnathos saltator]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 94/123 (76%), Gaps = 2/123 (1%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGK-PGQKPAALVGAIPADPSHIANRGDMVAALVRNVED- 58
           +R+ A MKML S+A TLPL+VGK PG KP  L GAIPA+PS+IA  GDMVAALV+   D 
Sbjct: 111 IRRGALMKMLLSTAQTLPLYVGKTPGAKPPPLCGAIPAEPSYIAKMGDMVAALVKPGSDQ 170

Query: 59  NEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPI 118
           +E+NWILAEVV +N +T  YEV DID+ QK  H LSR++++PLP  R NPET+P ALFP 
Sbjct: 171 DEENWILAEVVQFNPATNKYEVDDIDEEQKVRHTLSRRRVVPLPLMRVNPETDPHALFPK 230

Query: 119 GSV 121
           GS+
Sbjct: 231 GSI 233

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710980|ref|XP_003394060.1| PREDICTED: SAGA-associated factor 29 homolog [Bombus terrestris] gi|350400789|ref|XP_003485962.1| PREDICTED: SAGA-associated factor 29 homolog [Bombus impatiens]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 94/122 (77%), Gaps = 3/122 (2%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGK-PGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDN 59
           +R+ A MKM+ S+A TLPL+VGK PG KP  L GAIPA+P++IA  GDMVAALV+  E  
Sbjct: 108 IRRGALMKMVLSTAQTLPLYVGKTPGAKPPPLCGAIPAEPTYIAKMGDMVAALVKGSE-- 165

Query: 60  EDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIG 119
           E++WILAEVV +N +T  YEV DID+ QK  H LSR++++PLP  RANPET+P ALFP G
Sbjct: 166 EEDWILAEVVQFNPTTNKYEVDDIDEEQKDRHTLSRRRVVPLPLMRANPETDPHALFPKG 225

Query: 120 SV 121
           S+
Sbjct: 226 SI 227

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292592|ref|XP_313997.4| AGAP005116-PA [Anopheles gambiae str. PEST] gi|157017064|gb|EAA09403.5| AGAP005116-PA [Anopheles gambiae str. PEST]

 Score =  147 bits (372), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 93/121 (76%), Gaps = 1/121 (0%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
           +R+ A MKML+ SA TLPL+V KPG+K   L G+IPAD S+IA  GDMVAALV++ E+ E
Sbjct: 107 IRRGALMKMLQISAQTLPLFVSKPGEKIPHLCGSIPADSSYIAKPGDMVAALVKS-EEGE 165

Query: 61  DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIGS 120
           +NWILAEVV Y +ST  YEV DID+ QK  H LSR++I+PLP  RANPET+ +ALFP G+
Sbjct: 166 ENWILAEVVQYVSSTSKYEVDDIDEEQKDRHVLSRRRIVPLPLMRANPETDGQALFPKGT 225

Query: 121 V 121
            
Sbjct: 226 T 226

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189508|gb|EFN73885.1| SAGA-associated factor 29-like protein [Camponotus floridanus]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 93/122 (76%), Gaps = 2/122 (1%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGK-PGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDN 59
           +R+ A MKM++S+A TLPL+VGK PG KP  L GAIPA+P++IA  GDMVAALV+  E+ 
Sbjct: 109 IRRGALMKMVQSTAQTLPLYVGKTPGAKPPPLCGAIPAEPTYIAKMGDMVAALVKGNEEG 168

Query: 60  EDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIG 119
           E NWILAEVV +N +T  YEV DID+ QK  H LSR++++PLP  RANPET+P ALFP  
Sbjct: 169 E-NWILAEVVQFNPATNKYEVDDIDEEQKPRHTLSRRRVVPLPLMRANPETDPHALFPKN 227

Query: 120 SV 121
           S 
Sbjct: 228 ST 229

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026007|gb|EGI66158.1| SAGA-associated factor 29-like protein [Acromyrmex echinatior]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 91/122 (74%), Gaps = 2/122 (1%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGK-PGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDN 59
           +R+ A MKML S+A TLPL+VGK PG KP  L GAIPA+P++IA  GDMVAALV+  E+ 
Sbjct: 189 IRRGALMKMLLSTAQTLPLYVGKTPGGKPPPLCGAIPAEPTYIAKMGDMVAALVKGNEEG 248

Query: 60  EDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIG 119
           E NWILAEVV +  +T  YEV DID+ QK  H LSR++++PLP  RANPET+P ALF  G
Sbjct: 249 E-NWILAEVVQFIVATNKYEVDDIDEEQKDRHTLSRRRVVPLPLMRANPETDPHALFSKG 307

Query: 120 SV 121
           S 
Sbjct: 308 ST 309

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495710|ref|XP_001606291.2| PREDICTED: SAGA-associated factor 29 homolog [Nasonia vitripennis]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/122 (59%), Positives = 94/122 (77%), Gaps = 2/122 (1%)

Query: 1   MRKSAYMKMLKSSAHTLPLWVGK-PGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDN 59
           +R+ A MKML S+A TLPL++GK PG K   L GAIPA+P++IA  GDMVAALV+  E+ 
Sbjct: 109 IRRGALMKMLLSTAQTLPLYIGKTPGAKAPPLCGAIPAEPTYIAKMGDMVAALVKGSEE- 167

Query: 60  EDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIG 119
           E+NWILAEVV++N +T  YEV DID+ QK  H LSR++++PLP  RA+PET+P ALF  G
Sbjct: 168 EENWILAEVVHFNPTTNKYEVDDIDEEQKDRHILSRRRVVPLPLMRADPETDPHALFAKG 227

Query: 120 SV 121
           S+
Sbjct: 228 SI 229

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
MGI|MGI:1922815	293	Ccdc101 "coiled-coil domain co	0.934	0.392	0.586	1.4e-30
RGD|1310609	293	Ccdc101 "coiled-coil domain co	0.934	0.392	0.586	1.4e-30
UNIPROTKB|Q96ES7	293	CCDC101 "SAGA-associated facto	0.934	0.392	0.568	1.8e-30
UNIPROTKB|Q5ZL38	293	CCDC101 "SAGA-associated facto	0.934	0.392	0.551	2.1e-29
FB|FBgn0050390	289	Sgf29 "SAGA-associated factor	0.975	0.415	0.537	5.6e-29
UNIPROTKB|I3LMG8	282	CCDC101 "Uncharacterized prote	0.934	0.407	0.495	1.8e-23
UNIPROTKB|E1BN74	294	E1BN74 "Uncharacterized protei	0.934	0.391	0.333	3e-12
DICTYBASE|DDB_G0272054	411	DDB_G0272054 "DUF1325 family p	0.536	0.160	0.371	7.3e-05
TAIR|locus:2086711	270	SGF29a "AT3G27460" [Arabidopsi	0.552	0.251	0.32	0.00021
TAIR|locus:2168793	273	SGF29b "AT5G40550" [Arabidopsi	0.585	0.263	0.320	0.00045

MGI|MGI:1922815 Ccdc101 "coiled-coil domain containing 101" [Mus musculus (taxid:10090)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 68/116 (58%), Positives = 84/116 (72%)

Query:     1 MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
             MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A  GD VAA V+ VE +E
Sbjct:   114 MRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAKPGDKVAARVKAVEGDE 173

Query:    61 DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
               WILAEVV+Y+ +T  YEV DID+  K  H LSR++IIPLP  +ANPET+PEALF
Sbjct:   174 Q-WILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRIIPLPQWKANPETDPEALF 228

GO:0005634 "nucleus" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0070461 "SAGA-type complex" evidence=ISO

RGD|1310609 Ccdc101 "coiled-coil domain containing 101" [Rattus norvegicus (taxid:10116)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 68/116 (58%), Positives = 84/116 (72%)

Query:     1 MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
             MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A  GD VAA V+ VE +E
Sbjct:   114 MRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAKPGDKVAARVKAVEGDE 173

Query:    61 DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
               WILAEVV+Y+ +T  YEV DID+  K  H LSR++IIPLP  +ANPET+PEALF
Sbjct:   174 Q-WILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRIIPLPQWKANPETDPEALF 228

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISO;ISS

GO:0043966 "histone H3 acetylation" evidence=IEA;ISO

GO:0070461 "SAGA-type complex" evidence=ISO;ISS

UNIPROTKB|Q96ES7 CCDC101 "SAGA-associated factor 29 homolog" [Homo sapiens (taxid:9606)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 66/116 (56%), Positives = 84/116 (72%)

Query:     1 MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
             MR+   M +L+ SA TLPLW+GKPG KP  L GAIPA   ++A  GD VAA V+ V D +
Sbjct:   114 MRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAV-DGD 172

Query:    61 DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
             + WILAEVV+Y+ +T  YEV DID+  K  H LSR+++IPLP  +ANPET+PEALF
Sbjct:   173 EQWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALF 228

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0070461 "SAGA-type complex" evidence=IDA

GO:0071169 "establishment of protein localization to chromatin" evidence=TAS

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

UNIPROTKB|Q5ZL38 CCDC101 "SAGA-associated factor 29 homolog" [Gallus gallus (taxid:9031)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 64/116 (55%), Positives = 83/116 (71%)

Query:     1 MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
             MR+   M +L+ SA TLPLW+GKPG KP  L GA+PA   ++A  GD VAA V+ V D +
Sbjct:   114 MRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAMPAAGDYVAKPGDKVAARVKAV-DGD 172

Query:    61 DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
             + WILAEVV+Y+ +   YEV DID+  K  H LSR+++IPLP  +ANPET+PEALF
Sbjct:   173 EQWILAEVVSYSHAANKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALF 228

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0070461 "SAGA-type complex" evidence=ISS

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

FB|FBgn0050390 Sgf29 "SAGA-associated factor 29 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 65/121 (53%), Positives = 88/121 (72%)

Query:     1 MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNE 60
             +R+ A MKM++ SA TLPL+VGK G++  AL GAIPA+ +++A  GD VAAL + + D E
Sbjct:    99 IRRGALMKMVQLSAQTLPLFVGKLGERAPALCGAIPAEGNYVAKVGDNVAALAKGI-DEE 157

Query:    61 DNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIGS 120
             +NWILAEVV +      Y+VIDID+ QK  H LS++++IPLP  RANPET+  ALFP  +
Sbjct:   158 ENWILAEVVQFLHRQNKYDVIDIDEEQKDRHVLSKRKVIPLPLMRANPETDGHALFPKDT 217

Query:   121 V 121
             V
Sbjct:   218 V 218

GO:0005634 "nucleus" evidence=IDA

GO:0000124 "SAGA complex" evidence=IDA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0016573 "histone acetylation" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

UNIPROTKB|I3LMG8 CCDC101 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 61/123 (49%), Positives = 80/123 (65%)

Query:     1 MRKSAYMKMLKSSAHTLPLWVGKPGQ-------KPAALVGAIPADPSHIANRGDMVAALV 53
             MR+   M +L+ SA TLP   G+  +       +P  L GAIPA   ++A  GD VAA V
Sbjct:   110 MRRGVLMTLLQQSAMTLPGQAGERPELTSHCTLRPPPLCGAIPASGDYVAKPGDKVAARV 169

Query:    54 RNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPE 113
             + V D ++ WILAEVV+Y+ +T  YEV DID+  K  H LSR++IIPLP  +ANPET+PE
Sbjct:   170 KAV-DGDEQWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRIIPLPQWKANPETDPE 228

Query:   114 ALF 116
             ALF
Sbjct:   229 ALF 231

GO:0070461 "SAGA-type complex" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

UNIPROTKB|E1BN74 E1BN74 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 39/117 (33%), Positives = 60/117 (51%)

Query:     1 MRKSAYMKMLKSSAHTLPLWVG-KPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDN 59
             M K      ++  AHT PLW+G KP   P  L   +P     ++  G   A+  ++V D 
Sbjct:   114 MSKGVLGSFVQQRAHTGPLWLGEKPPDNPTGLKSQVPPQGDRLSLSGTKKASSSQSVGDL 173

Query:    60 EDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
                 ++ + +++  +   Y V    +     H LSR++IIPLP  +ANPET+PEALF
Sbjct:   174 PQR-VVQQQMSFCKAHDDYNVFRGQEASARRHTLSRRRIIPLPQWKANPETDPEALF 229

GO:0070461 "SAGA-type complex" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

DICTYBASE|DDB_G0272054 DDB_G0272054 "DUF1325 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 103 (41.3 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 26/70 (37%), Positives = 40/70 (57%)

Query:    41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIP 100
             H    G +VAA  R+ + N+  WILA+V +++  T+ YEVID D+ +     + +K II 
Sbjct:   283 HGMQPGQLVAA--RDSKSNQ--WILAKVSSFSQKTQKYEVIDEDEEESKRFSVGQKDIIQ 338

Query:   101 LPTKRANPET 110
             LP+    P T
Sbjct:   339 LPSHTNLPPT 348

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2086711 SGF29a "AT3G27460" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 0.00021, P = 0.00021
 Identities = 24/75 (32%), Positives = 42/75 (56%)

Query:    45 RGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDI---DDVQKG---PHQLSRKQI 98
             +G+ VAA V   +  +D W + +V++++  T+  EV+D    DD + G    ++LS   I
Sbjct:   131 KGEQVAARVTAEDAEKDEWFVVKVIHFDRETKEVEVLDEEPGDDEEGGGQRTYKLSMSCI 190

Query:    99 IPLPTKRANPETEPE 113
             +P P KR +P +  E
Sbjct:   191 LPFP-KRNDPSSTQE 204

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009651 "response to salt stress" evidence=IMP

TAIR|locus:2168793 SGF29b "AT5G40550" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00045, P = 0.00045
 Identities = 26/81 (32%), Positives = 44/81 (54%)

Query:    45 RGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDID--DVQKGPHQLSRKQ----I 98
             +G+ VAA V     ++D W + +V++++  T+  EV+D +  D ++G  Q + K     I
Sbjct:   134 KGEQVAARVTAESADKDEWFVVKVIHFDRETKEVEVLDEEPGDDEEGSGQRTYKLPMLCI 193

Query:    99 IPLPTKRANPETEPEALFPIG 119
             +P P KR +P    E  FP G
Sbjct:   194 LPFP-KRNDPSNTQE--FPPG 211


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      123       123   0.00091  102 3  11 23  0.42    31
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  550 (59 KB)
  Total size of DFA:  125 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.65u 0.06s 13.71t   Elapsed:  00:00:27
  Total cpu time:  13.65u 0.06s 13.71t   Elapsed:  00:00:27
  Start:  Thu Aug 15 13:08:38 2013   End:  Thu Aug 15 13:09:05 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009651 "response to salt stress" evidence=IMP

GO:0043966 "histone H3 acetylation" evidence=IMP

GO:0043967 "histone H4 acetylation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9DA08	SGF29_MOUSE	No assigned EC number	0.5862	0.9349	0.3924	yes	N/A
Q5ZL38	SGF29_CHICK	No assigned EC number	0.5517	0.9349	0.3924	yes	N/A
Q96ES7	SGF29_HUMAN	No assigned EC number	0.5689	0.9349	0.3924	yes	N/A
P0C606	SGF29_RAT	No assigned EC number	0.5862	0.9349	0.3924	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	123
pfam07039	130	pfam07039, DUF1325, SGF29 tudor-like domain	6e-25

>gnl|CDD|219277 pfam07039, DUF1325, SGF29 tudor-like domain

 Score = 91.2 bits (227), Expect = 6e-25
 Identities = 41/75 (54%), Positives = 54/75 (72%), Gaps = 2/75 (2%)

Query: 46  GDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKR 105
           GD VAA V+  ++ E+ WILAEV++Y++ T  YEV D D  +K  ++LSRK +IPLP K 
Sbjct: 2   GDEVAAKVKKGDE-EEEWILAEVISYSSDTNRYEVQDPDPEEKKRYKLSRKDLIPLP-KT 59

Query: 106 ANPETEPEALFPIGS 120
           ANPET P ALFP G+
Sbjct: 60  ANPETSPHALFPKGT 74

This domain is found in the yeast protein SAGA-associated factor 29. This domain is related to members of the Tudor domain superfamily such as pfam05641. The SAGA complex is involved in RNA polymerase II-dependent transcriptional regulation. The membership of the tudor domain superfamily suggests this domain may bind to RNA. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
KOG3038|consensus	264		100.0
PF07039	130	DUF1325: SGF29 tudor-like domain; InterPro: IPR010	99.92
smart00743	61	Agenet Tudor-like domain present in plant sequence	97.41
smart00333	57	TUDOR Tudor domain. Domain of unknown function pre	95.0
PF09465	55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	93.99
PF05641	68	Agenet: Agenet domain; InterPro: IPR008395 This do	93.69
PF11302	75	DUF3104: Protein of unknown function (DUF3104); In	89.89
cd04508	48	TUDOR Tudor domains are found in many eukaryotic o	89.27
PF15057	124	DUF4537: Domain of unknown function (DUF4537)	85.05

>KOG3038|consensus

Probab=100.00  E-value=1.9e-36  Score=244.53  Aligned_cols=118  Identities=47%  Similarity=0.769  Sum_probs=113.5

Q ss_pred             CchHHHHHHHHhcccccceeecCCCCCCCCccccccCCCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEE
Q psy11712          1 MRKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEV   80 (123)
Q Consensus         1 ~rrg~lm~~lq~~a~~lPlw~gk~~~~ppplcGaip~~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV   80 (123)
                      |||+++|+++++++++||+|+|+++ ++|++||+||+++++++.+||+|||+++..+++ .+||||+|++|+++++ |||
T Consensus        87 ~~r~~~~el~k~~~~~lp~~~~~~~-~~p~~~gaip~~~~~~~~~gd~VAa~v~~~~~d-g~WIlaeVv~~~~~~~-ye~  163 (264)
T KOG3038|consen   87 MRRGVLMELLKQKAMTLPLWIGKPG-KPPPLCGAIPAQGDYVLLKGDEVAARVKAVSED-GDWILAEVVKVSSETR-YEF  163 (264)
T ss_pred             hhhhhhhhHHhhhccccccccCCCC-CCCcccccccccCCccccCCceeeeeeeeccCC-CCEEEEEEEEEecCCc-eEe
Confidence            7999999999999999999999999 999999999999999999999999999988777 6799999999988777 999


Q ss_pred             eecCCCCCceeEecCCceeeCCCCCCCCCCCCCCCCCCCCC
Q psy11712         81 IDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIGSV  121 (123)
Q Consensus        81 ~D~Dee~k~r~~ls~~~IIPLP~~ka~P~t~p~AlFp~g~~  121 (123)
                      +|+|+|.|+...++|+++||||+|++||..+|+++||+|++
T Consensus       164 ev~D~Epk~d~~g~r~~~yklp~~~~~p~p~p~~~fpp~~~  204 (264)
T KOG3038|consen  164 EVVDPEPKKDEVGNRGQLYKLPRWKLNPIPPPTALFPPGTI  204 (264)
T ss_pred             EecCCCccccccccccceecccHhhcCCCCCCccCCCCCCE
Confidence            99999999999999999999999999999999999999985

>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes

Probab=99.92  E-value=1.5e-25  Score=165.33  Aligned_cols=76  Identities=51%  Similarity=0.795  Sum_probs=61.2

Q ss_pred             CCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCC-CCceeEecCCceeeCCCCCCCCCCCCCCCCCCCCC
Q psy11712         44 NRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDV-QKGPHQLSRKQIIPLPTKRANPETEPEALFPIGSV  121 (123)
Q Consensus        44 ~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee-~k~r~~ls~~~IIPLP~~ka~P~t~p~AlFp~g~~  121 (123)
                      ++|++|||+++..+++ ++||||+|++|++++++|||+|+|++ ++++|++++++|||||+ ++++.+++.+.|++|+.
T Consensus         1 q~G~~VAak~~~~~~~-~~WIla~Vv~~~~~~~rYeV~D~d~~~~~~~~~~~~~~iIPLP~-~~~~~~~~~~~f~~g~~   77 (130)
T PF07039_consen    1 QPGDQVAAKVKQGNEE-EEWILAEVVKYNSDGNRYEVEDPDPEEEKKRYKLSRKQIIPLPK-KAPPDTDPLAEFPKGTK   77 (130)
T ss_dssp             -TT-EEEEEECTTTTT-CEEEEEEEEEEETTTTEEEEEETTTCTTTEEEEEEGGGEEEE-S-B--TTT-GGGS--TT-E
T ss_pred             CCCCEEEEEcCCCCCC-CCEEEEEEEEEeCCCCEEEEecCCCCCCCceEEeCHHHEEECCC-ccCCCCCchhhCCCCCE
Confidence            5899999999954444 89999999999999999999999988 56799999999999997 99999999999999973

It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=97.41  E-value=0.001  Score=42.00  Aligned_cols=59  Identities=19%  Similarity=0.259  Sum_probs=48.4

Q ss_pred             cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCCCC
Q psy11712         42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKR  105 (123)
Q Consensus        42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~~k  105 (123)
                      .++.|+.|.|+-+.   + +.|.-|.|++++. .++|.|.=.++.....-+++.++|=|+|.|.
T Consensus         2 ~~~~G~~Ve~~~~~---~-~~W~~a~V~~~~~-~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w~   60 (61)
T smart00743        2 DFKKGDRVEVFSKE---E-DSWWEAVVTKVLG-DGKYLVRYLTESEPLKETVDWSDLRPHPPWV   60 (61)
T ss_pred             CcCCCCEEEEEECC---C-CEEEEEEEEEECC-CCEEEEEECCCCcccEEEEeHHHcccCCCCC
Confidence            47899999999974   2 7899999999975 7789999988444456788889998888764

Domain in plant sequences with possible chromatin-associated functions.

>smart00333 TUDOR Tudor domain

Probab=95.00  E-value=0.14  Score=31.28  Aligned_cols=54  Identities=28%  Similarity=0.420  Sum_probs=42.2

Q ss_pred             cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712         42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT  103 (123)
Q Consensus        42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~  103 (123)
                      ..++|+.|+|+. .+    ..|--|+|++++.+ +.|.|.=+|-...  -.+++..|=+||.
T Consensus         2 ~~~~G~~~~a~~-~d----~~wyra~I~~~~~~-~~~~V~f~D~G~~--~~v~~~~l~~l~~   55 (57)
T smart00333        2 TFKVGDKVAARW-ED----GEWYRARIIKVDGE-QLYEVFFIDYGNE--EVVPPSDLRPLPE   55 (57)
T ss_pred             CCCCCCEEEEEe-CC----CCEEEEEEEEECCC-CEEEEEEECCCcc--EEEeHHHeecCCC
Confidence            467899999998 42    68999999999866 8899987774432  4777888888873

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane

Probab=93.99  E-value=0.48  Score=30.77  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=32.5

Q ss_pred             CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecC
Q psy11712         40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDID   84 (123)
Q Consensus        40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~D   84 (123)
                      +.+...|+.|-++=..+    ..|.=|+|++||.++++|.|.=.|
T Consensus         3 ~~k~~~Ge~V~~rWP~s----~lYYe~kV~~~d~~~~~y~V~Y~D   43 (55)
T PF09465_consen    3 SRKFAIGEVVMVRWPGS----SLYYEGKVLSYDSKSDRYTVLYED   43 (55)
T ss_dssp             SSSS-SS-EEEEE-TTT----S-EEEEEEEEEETTTTEEEEEETT
T ss_pred             cccccCCCEEEEECCCC----CcEEEEEEEEecccCceEEEEEcC
Confidence            35788999999998853    689999999999999999998776

It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.

>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []

Probab=93.69  E-value=0.41  Score=31.08  Aligned_cols=58  Identities=22%  Similarity=0.247  Sum_probs=34.8

Q ss_pred             CCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecC---CCC--C-ceeEecCCceeeCC
Q psy11712         43 ANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDID---DVQ--K-GPHQLSRKQIIPLP  102 (123)
Q Consensus        43 ~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~D---ee~--k-~r~~ls~~~IIPLP  102 (123)
                      +++|++|-.+...++-. .-|.-|+|++...++ +|-|.=.|   +++  + -.-+++.++|=|.|
T Consensus         1 F~~G~~VEV~s~e~g~~-gaWf~a~V~~~~~~~-~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~p   64 (68)
T PF05641_consen    1 FKKGDEVEVSSDEDGFR-GAWFPATVLKENGDD-KYLVEYDDLPDEDGESPPLKEWVDARRIRPCP   64 (68)
T ss_dssp             --TT-EEEEEE-SBTT---EEEEEEEEEEETT--EEEEEETT-SS--------EEEEEGGGEEE--
T ss_pred             CCCCCEEEEEEcCCCCC-cEEEEEEEEEeCCCc-EEEEEECCcccccccccccEEEechheEECcC
Confidence            46899999998765544 789999999987543 77775432   222  2 24778889999988

The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.

>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria

Probab=89.89  E-value=1.3  Score=30.35  Aligned_cols=45  Identities=18%  Similarity=0.404  Sum_probs=32.7

Q ss_pred             cCCCCCeEEEEeccCC--CCCCceEEEEEeeeeC-----C-CCceEEeecCCC
Q psy11712         42 IANRGDMVAALVRNVE--DNEDNWILAEVVNYNA-----S-TRTYEVIDIDDV   86 (123)
Q Consensus        42 ~~~~Gd~VAA~v~~~~--~~~~~WILA~Vv~~~~-----~-~~~YeV~D~Dee   86 (123)
                      .+++||.|..+-....  ...++|=+++|+++..     + ..-|.|-|+|..
T Consensus         5 ~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~ggaR~P~~~tlFQVadVDtG   57 (75)
T PF11302_consen    5 SVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGGARDPKVPTLFQVADVDTG   57 (75)
T ss_pred             ccCCCCEEEEecCccccccCCCCcEEEEEEEEeccccCCCCCceEEEEEccCC
Confidence            4789999998866521  2236899999999863     2 223999999864

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains

Probab=89.27  E-value=1.6  Score=25.56  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=29.4

Q ss_pred             CCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCC
Q psy11712         46 GDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDD   85 (123)
Q Consensus        46 Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~De   85 (123)
                      |+.|+|+.+.+    ..|--|+|+++.. ++.|.|.=+|=
T Consensus         1 G~~c~a~~~~d----~~wyra~V~~~~~-~~~~~V~f~Dy   35 (48)
T cd04508           1 GDLCLAKYSDD----GKWYRAKITSILS-DGKVEVFFVDY   35 (48)
T ss_pred             CCEEEEEECCC----CeEEEEEEEEECC-CCcEEEEEEcC
Confidence            78899998842    7899999999875 88899987773

For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.

>PF15057 DUF4537: Domain of unknown function (DUF4537)

Probab=85.05  E-value=3.1  Score=30.25  Aligned_cols=58  Identities=17%  Similarity=0.167  Sum_probs=43.5

Q ss_pred             CCcCCCCCeEEEEeccCCCCCCceEEEEEeee----eCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712         40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNY----NASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT  103 (123)
Q Consensus        40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~----~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~  103 (123)
                      .+.+++||+|-|+.+..+   ..|+=|.|+..    -.+.+.|.|.=-|..   +.++++..++.+|.
T Consensus        53 ~~~L~~GD~VLA~~~~~~---~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~---~~~vp~~~~~~I~~  114 (124)
T PF15057_consen   53 RHSLQVGDKVLAPWEPDD---CRYGPGTVIAGPERRASEDKEYTVRFYNGK---TAKVPRGEVIWISP  114 (124)
T ss_pred             cCcCCCCCEEEEecCcCC---CEEeCEEEEECccccccCCceEEEEEECCC---CCccchhhEEECCH
Confidence            678999999999966543   67999999973    235566766555543   46799999999883

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	123
3me9_A	180	Crystal Structure Of Sgf29 In Complex With H3k4me3		1e-30
3mea_A	180	Crystal Structure Of The Sgf29 In Complex With H3k4		2e-28
3mew_A	159	Crystal Structure Of Novel Tudor Domain-Containing		3e-28
3lx7_A	174	Crystal Structure Of A Novel Tudor Domain-Containin		2e-22

>pdb|3ME9|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide Length = 180

Iteration: 1
 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
Query: 2   RKSAYMKMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNED 61
           R+     +L+ SA TLPLW+GKPG KP  L GAIPA   ++A  GD VAA V+ V D ++
Sbjct: 2   RRGVLXTLLQQSAXTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAV-DGDE 60
Query: 62  NWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
            WILAEVV+Y+ +T  YEV DID+  K  H LSR+++IPLP  +ANPET+PEALF
Sbjct: 61  QWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALF 115

>pdb|3MEA|A Chain A, Crystal Structure Of The Sgf29 In Complex With H3k4me3 Length = 180

Iteration: 1
 Score =  120 bits (300), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 75/101 (74%), Gaps = 1/101 (0%)
Query: 16  TLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNAST 75
           TLPLW+GKPG KP  L GAIPA   ++A  GD VAA V+ V D ++ WILAEVV+Y+ +T
Sbjct: 18  TLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAV-DGDEQWILAEVVSYSHAT 76
Query: 76  RTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
             YEV DID+  K  H LSR+++IPLP  +ANPET+PEALF
Sbjct: 77  NKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALF 117

>pdb|3MEW|A Chain A, Crystal Structure Of Novel Tudor Domain-Containing Protein Sgf29 Length = 159

Iteration: 1
 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 75/101 (74%), Gaps = 1/101 (0%)
Query: 16  TLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNAST 75
           TLPLW+GKPG KP  L GAIPA   ++A  GD VAA V+ V D ++ WILAEVV+Y+ +T
Sbjct: 1   TLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAV-DGDEQWILAEVVSYSHAT 59
Query: 76  RTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
             YEV DID+  K  H LSR+++IPLP  +ANPET+PEALF
Sbjct: 60  NKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALF 100

>pdb|3LX7|A Chain A, Crystal Structure Of A Novel Tudor Domain-Containing Protein Sgf29 Length = 174

Iteration: 1
 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Query: 25  GQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDID 84
           G KP  L GAIPA   ++A  GD VAA V+ V D ++ WILAEVV+Y+ +T  YEV DID
Sbjct: 19  GDKPPPLCGAIPASGDYVARPGDKVAARVKAV-DGDEQWILAEVVSYSHATNKYEVDDID 77
Query: 85  DVQKGPHQLSRKQIIPLPTKRANPETEPEALF 116
           +  K  H LSR+++IPLP  +ANPET+PEALF
Sbjct: 78  EEGKERHTLSRRRVIPLPQWKANPETDPEALF 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	123
3mea_A	180	SAGA-associated factor 29 homolog; structural geno	6e-36
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A Length = 180

 Score =  120 bits (302), Expect = 6e-36
 Identities = 59/109 (54%), Positives = 73/109 (66%), Gaps = 1/109 (0%)

Query: 12  SSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNY 71
               TLPLW+GKPG KP  L GAIPA   ++A  GD VAA V    D ++ WILAEVV+Y
Sbjct: 14  YFQGTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARV-KAVDGDEQWILAEVVSY 72

Query: 72  NASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKRANPETEPEALFPIGS 120
           + +T  YEV DID+  K  H LSR+++IPLP  +ANPET+PEALF    
Sbjct: 73  SHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALFQKEQ 121

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 37/120 (30%)

Query: 8   KMLKSSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAE 67
           K L      LP            L      +P  ++    ++A  +R+     DNW   +
Sbjct: 309 KYLDCRPQDLP---------REVLTT----NPRRLS----IIAESIRDGLATWDNW---K 348

Query: 68  VVNYNASTRT----YEVIDIDDVQKGPHQLSRKQIIP----LPTK------RANPETEPE 113
            VN +  T        V++  + +K   +LS   + P    +PT           +++  
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPSAHIPTILLSLIWFDVIKSDVM 405

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
3mea_A	180	SAGA-associated factor 29 homolog; structural geno	100.0
3mp6_A	522	MBP, SGF29, maltose-binding periplasmic protein, l	99.83
4a4f_A	64	SurviVal of motor neuron-related-splicing factor;	96.8
2equ_A	74	PHD finger protein 20-like 1; tudor domain, struct	96.53
1mhn_A	59	SurviVal motor neuron protein; SMN, SMA, spinal mu	96.27
3pnw_C	77	Tudor domain-containing protein 3; FAB, structural	96.13
2d9t_A	78	Tudor domain-containing protein 3; structural geno	95.96
1g5v_A	88	SurviVal motor neuron protein 1; mRNA processing,	95.43
3s6w_A	54	Tudor domain-containing protein 3; methylated argi	95.42
3fdr_A	94	Tudor and KH domain-containing protein; TDRD2, str	94.92
2eqk_A	85	Tudor domain-containing protein 4; structural geno	93.84
2ldm_A	81	Uncharacterized protein; PHF20, tudor domain, epig	92.41
3p8d_A	67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	93.14
3qii_A	85	PHD finger protein 20; tudor domain, structural ge	92.63
2diq_A	110	Tudor and KH domain-containing protein; tudor doma	92.08
4b9w_A	201	TDRD1, tudor domain-containing protein 1; replicat	90.96
2wac_A	218	CG7008-PA; unknown function, tudor, beta-barrel, n	90.61
3mp6_A	522	MBP, SGF29, maltose-binding periplasmic protein, l	88.79
4b9x_A	226	TDRD1, tudor domain-containing protein 1; replicat	88.42
3mea_A	180	SAGA-associated factor 29 homolog; structural geno	87.52
3ntk_A	169	Maternal protein tudor; tudor domain, OB-fold, GER	85.87
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	83.29
2hqx_A	246	P100 CO-activator tudor domain; human P100 tudor d	82.11
2dig_A	68	Lamin-B receptor; tudor domain, integral nuclear e	80.79

>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A

Probab=100.00  E-value=7.3e-44  Score=274.62  Aligned_cols=109  Identities=54%  Similarity=0.899  Sum_probs=103.4

Q ss_pred             hcccccceeecCCCCCCCCccccccCCCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCcee
Q psy11712         12 SSAHTLPLWVGKPGQKPAALVGAIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPH   91 (123)
Q Consensus        12 ~~a~~lPlw~gk~~~~ppplcGaip~~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~   91 (123)
                      ++|+|||||+|||+++|||||||||+++++++++|++|||+++..+++ ++||||+|++|+.++++|||+|+|+||+++|
T Consensus        14 ~~~~~lplw~gk~~~~~p~lcGa~p~~~~~~~~~G~~VAakvk~~~~~-~~WILa~Vv~~~~~~~rYeV~D~d~eg~~~~   92 (180)
T 3mea_A           14 YFQGTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGD-EQWILAEVVSYSHATNKYEVDDIDEEGKERH   92 (180)
T ss_dssp             CSTTCCCBCCCCTTCCCCTTBTTCCCCTTCCCCTTCEEEEEEECCC---EEEEEEEEEEEETTTTEEEEEECCTTCCEEE
T ss_pred             hcccccccccCCCCCCCCCccccccCCCCcccCCCCEEEEEcCCCCCC-ccEEEEEEEEEcCCCCEEEEecCCCCCceeE
Confidence            589999999999999999999999999999999999999999976555 7999999999999999999999999999899


Q ss_pred             EecCCceeeCCCCCCCCCCCCCCCCCCCCC
Q psy11712         92 QLSRKQIIPLPTKRANPETEPEALFPIGSV  121 (123)
Q Consensus        92 ~ls~~~IIPLP~~ka~P~t~p~AlFp~g~~  121 (123)
                      ++|+++|||||+|++||++++.++|++|+.
T Consensus        93 ~~s~~~IIPLP~~~a~p~t~~~~~f~~G~~  122 (180)
T 3mea_A           93 TLSRRRVIPLPQWKANPETDPEALFQKEQL  122 (180)
T ss_dssp             EEEGGGEEECCSBBCCTTTCGGGSCCTTCE
T ss_pred             EeCHHHEEECCCcCCCcccCccccCCCCCE
Confidence            999999999999999999999999999984

>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*

Probab=99.83  E-value=8.7e-21  Score=159.19  Aligned_cols=75  Identities=24%  Similarity=0.356  Sum_probs=62.4

Q ss_pred             CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecC--CCCC--ceeEecCCceeeCCCCCCCCCCCCCCC
Q psy11712         40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDID--DVQK--GPHQLSRKQIIPLPTKRANPETEPEAL  115 (123)
Q Consensus        40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~D--ee~k--~r~~ls~~~IIPLP~~ka~P~t~p~Al  115 (123)
                      +..+++|++|||+++..+++ ++||||+|++|+++++||||+|+|  |+++  ++|+||+++|||||.      ++|+++
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~-~~wi~~~~~~~~~~~~~y~v~d~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~~  457 (522)
T 3mp6_A          385 NAPILVGSEVAYKPRRGSAD-GEWIQCEVLKVVADGTRFEVRDPEPDELGNSGKVYKCNRKELLLIPP------GFPTKN  457 (522)
T ss_dssp             CCCBCTTCEEEECCC------CCEEEEEEEEEETTTTEEEEEECSCBTTBTTCEEEEECGGGEEEECS------SCCCCC
T ss_pred             ccccCCCCEEEEecCCCCCC-CCEEEEEEEEEeCCCCEEEEeCCCCCCCCCCCeeEEccHHHEEECCC------CCcccC
Confidence            66789999999999976555 899999999999999999999994  5543  589999999999992      678899


Q ss_pred             CCCCCC
Q psy11712        116 FPIGSV  121 (123)
Q Consensus       116 Fp~g~~  121 (123)
                      |++|+.
T Consensus       458 ~~~~~~  463 (522)
T 3mp6_A          458 YPPGTK  463 (522)
T ss_dssp             CCTTCE
T ss_pred             CCCCCE
Confidence            999974

>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*

Probab=96.80  E-value=0.0094  Score=37.70  Aligned_cols=60  Identities=15%  Similarity=0.117  Sum_probs=49.2

Q ss_pred             CCCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712         37 ADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP  102 (123)
Q Consensus        37 ~~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP  102 (123)
                      ++.....++||.+.|+-..+    ..|--|+|.+.+.+++.|+|.=+|=..  +-+++.++|-||+
T Consensus         3 ~~~~~~~~vGd~c~A~~s~D----g~wYrA~I~~v~~~~~~~~V~fvdYGn--~e~V~~~~Lrpl~   62 (64)
T 4a4f_A            3 TQPTHSWKVGDKCMAVWSED----GQCYEAEIEEIDEENGTAAITFAGYGN--AEVTPLLNLKPVE   62 (64)
T ss_dssp             SCCSSCCCTTCEEEEECTTT----SSEEEEEEEEEETTTTEEEEEETTTTE--EEEEEGGGEECCS
T ss_pred             CCcCCCCCCCCEEEEEECCC----CCEEEEEEEEEcCCCCEEEEEEEecCC--EEEEeHHHcEeCC
Confidence            45567899999999999643    689999999998778899999888532  4678888888886

>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.53  E-value=0.017  Score=38.06  Aligned_cols=57  Identities=21%  Similarity=0.153  Sum_probs=46.7

Q ss_pred             CCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712         38 DPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT  103 (123)
Q Consensus        38 ~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~  103 (123)
                      +.....++||.|.|+-. +    ..|--|+|.+.+.+ +.|.|.=+|-   ..-+++.++|-|||.
T Consensus         5 ~~~~~~kvGd~clA~ws-D----g~~Y~A~I~~v~~~-~~~~V~f~Dy---n~e~v~~~~lrplp~   61 (74)
T 2equ_A            5 SSGFDFKAGEEVLARWT-D----CRYYPAKIEAINKE-GTFTVQFYDG---VIRCLKRMHIKAMPE   61 (74)
T ss_dssp             CSCCCCCTTCEEEEECS-S----SSEEEEEEEEESTT-SSEEEEETTS---CEEEECGGGEECCCG
T ss_pred             cCCCCCCCCCEEEEECC-C----CCEEEEEEEEECCC-CEEEEEEecC---CeEEecHHHCeeCCh
Confidence            34578999999999986 3    68999999998744 7899976664   456899999999995

>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*

Probab=96.27  E-value=0.025  Score=35.04  Aligned_cols=55  Identities=11%  Similarity=0.017  Sum_probs=45.5

Q ss_pred             cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712         42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP  102 (123)
Q Consensus        42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP  102 (123)
                      ..++|+.|+|+-..+    ..|--|+|.+.+.+++.|+|.=+|=..  .-+++.++|-|||
T Consensus         3 ~~~~G~~c~A~~s~D----g~wYrA~I~~i~~~~~~~~V~f~DYGn--~e~v~~~~Lr~~~   57 (59)
T 1mhn_A            3 QWKVGDKCSAIWSED----GCIYPATIASIDFKRETCVVVYTGYGN--REEQNLSDLLSPI   57 (59)
T ss_dssp             CCCTTCEEEEECTTT----SCEEEEEEEEEETTTTEEEEEETTTTE--EEEEEGGGCBCTT
T ss_pred             cCCcCCEEEEEECCC----CCEEEEEEEEEcCCCCEEEEEEEcCCC--EEEEcHHHeeCCC
Confidence            578999999998743    689999999998767899998888432  4578889999998

>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}

Probab=96.13  E-value=0.01  Score=39.10  Aligned_cols=64  Identities=27%  Similarity=0.230  Sum_probs=48.6

Q ss_pred             cccCCCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712         34 AIPADPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT  103 (123)
Q Consensus        34 aip~~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~  103 (123)
                      .++.+.....++|+.++|+-..+    ..|--|+|.+.+.+++.|+|.=+|=..  .-+++.++|-|||.
T Consensus         9 ~~~~e~~~~~kvGd~C~A~ys~D----g~wYRA~I~~i~~~~~~~~V~fvDYGN--~e~V~~~~Lr~l~~   72 (77)
T 3pnw_C            9 SIPMEYAKMWKPGDECFALYWED----NKFYRAEVEALHSSGMTAVVKFIDYGN--YEEVLLSNIKPIQT   72 (77)
T ss_dssp             --CHHHHTTCCTTCEEEEEETTT----TEEEEEEEEEECTTSSEEEEEETTTCC--EEEEEGGGEECC--
T ss_pred             ccchhhcCCCCcCCEEEEEECCC----CCEEEEEEEEEeCCCCEEEEEEEcCCC--eEEEeHHHeEECCh
Confidence            34444445689999999999643    689999999998777899999888543  46789999999993

>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1

Probab=95.96  E-value=0.045  Score=35.86  Aligned_cols=59  Identities=24%  Similarity=0.154  Sum_probs=47.7

Q ss_pred             CCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712         39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT  103 (123)
Q Consensus        39 ~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~  103 (123)
                      ..+..++|+.|+|+-..+    ..|--|+|++.+.+.++|+|.=+|=..  .-+++.++|-|||.
T Consensus         6 ~~~~~~~G~~c~A~~s~D----g~wYRA~I~~i~~~~~~~~V~fiDYGN--~e~V~~~~Lr~l~~   64 (78)
T 2d9t_A            6 SGKVWKPGDECFALYWED----NKFYRAEVEALHSSGMTAVVKFTDYGN--YEEVLLSNIKPVQT   64 (78)
T ss_dssp             CCCCCCTTCEEEEECTTT----CCEEEEEEEEECSSSSEEEEEETTTTE--EEEEEGGGEEECCC
T ss_pred             CccCCCcCCEEEEEECCC----CCEEEEEEEEEeCCCCEEEEEEEcCCC--eEEEcHHHeEeCCH
Confidence            345789999999998742    689999999997667899999988543  35788889999983

>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=95.43  E-value=0.059  Score=36.47  Aligned_cols=58  Identities=10%  Similarity=0.008  Sum_probs=46.1

Q ss_pred             CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712         40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT  103 (123)
Q Consensus        40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~  103 (123)
                      ....++||.|.|+-..+    ..|--|.|.+.+.+.+.|.|.=+|=..  .-+++.++|.|||.
T Consensus         8 ~~~~kvGd~C~A~ys~D----g~wYrA~I~~i~~~~~~~~V~fiDYGN--~E~V~~~~Lrp~~~   65 (88)
T 1g5v_A            8 LQQWKVGDKCSAIWSED----GCIYPATIASIDFKRETCVVVYTGYGN--REEQNLSDLLSPIC   65 (88)
T ss_dssp             -CCCCSSCEEEEECTTT----CCEEEEEEEEEETTTTEEEEEETTTCC--EEEEEGGGCBCCC-
T ss_pred             cCCCCCCCEEEEEECCC----CCEEEEEEEEecCCCCEEEEEEecCCC--EEEEcHHHcccCCh
Confidence            34689999999999743    689999999998777899998877443  34788889999873

>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*

Probab=95.42  E-value=0.078  Score=32.01  Aligned_cols=53  Identities=26%  Similarity=0.164  Sum_probs=39.3

Q ss_pred             CCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeC
Q psy11712         43 ANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPL  101 (123)
Q Consensus        43 ~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPL  101 (123)
                      .++||.++|+-..+    ..|--|+|.+.+.+++.|+|.=+|=..  .-+++.+.|-||
T Consensus         2 wk~G~~c~A~~s~D----g~wYrA~I~~i~~~~~~~~V~fvDYGn--~e~v~~~~lrpi   54 (54)
T 3s6w_A            2 WKPGDECFALYWED----NKFYRAEVEALHSSGMTAVVKFIDYGN--YEEVLLSNIKPI   54 (54)
T ss_dssp             CCTTCEEEEEETTT----TEEEEEEEEEC--CCSEEEEEETTTCC--EEEEEGGGEECC
T ss_pred             CCCCCEEEEEECCC----CCEEEEEEEEEeCCCCEEEEEEEccCC--eEEEeHHHEEEC
Confidence            47899999998643    689999999987777899999888543  345666666554

>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1

Probab=94.92  E-value=0.19  Score=33.21  Aligned_cols=55  Identities=20%  Similarity=0.215  Sum_probs=44.0

Q ss_pred             CcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712         41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP  102 (123)
Q Consensus        41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP  102 (123)
                      +..++|+.|||+...+    ..|--|+|++.. +++.++|.=+|=..  .-+++.++|-+||
T Consensus        26 ~~~~~G~~c~a~~~~d----~~wyRA~I~~~~-~~~~~~V~fvDyGn--~e~v~~~~lr~l~   80 (94)
T 3fdr_A           26 LTVHVGDIVAAPLPTN----GSWYRARVLGTL-ENGNLDLYFVDFGD--NGDCPLKDLRALR   80 (94)
T ss_dssp             CCCCTTCEEEEEETTT----TEEEEEEEEEEC-TTSCEEEEETTTCC--EEEECGGGCEECC
T ss_pred             CCCCCCCEEEEEECCC----CeEEEEEEEEEC-CCCeEEEEEEcCCC--eEEEEHHHhhhcC
Confidence            5689999999998632    689999999985 45789999998654  3467778888887

>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.84  E-value=0.36  Score=32.77  Aligned_cols=56  Identities=11%  Similarity=0.086  Sum_probs=44.3

Q ss_pred             CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712         40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP  102 (123)
Q Consensus        40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP  102 (123)
                      ....+.|+.|||+...+    .+|--|+|.+... .+.-||.=+|=..+  -+++-.++=|||
T Consensus        19 ~~~~k~g~~vaak~~d~----n~WyRakV~~v~~-~~~veVl~~DyGn~--~~V~~~~LR~L~   74 (85)
T 2eqk_A           19 PVKWENDMHCAVKIQDK----NQWRRGQIIRMVT-DTLVEVLLYDVGVE--LVVNVDCLRKLE   74 (85)
T ss_dssp             CCCCCSSCEEEEECSSS----CCEEEEEEEEECS-SSEEEEECTTTCCE--EEEETTTEEECC
T ss_pred             ccCccCCCEEEEEeCCC----CeEEEEEEEEecC-CCeEEEEEEccCCE--EEEEccccccCC
Confidence            45679999999999842    5899999999764 45599999996653  366677899986

>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}

Probab=92.41  E-value=0.015  Score=39.23  Aligned_cols=55  Identities=16%  Similarity=0.094  Sum_probs=44.5

Q ss_pred             cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCCCC
Q psy11712         42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTKR  105 (123)
Q Consensus        42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~~k  105 (123)
                      ..++||+|.|+-. +    ..|--|+|.+.+. ++.|+|.=+|  | ..-+++.++|.|||+.+
T Consensus         6 ~~kvGd~clAkws-D----g~wY~A~I~~v~~-~~~y~V~F~D--G-n~E~V~~s~LrPl~~~~   60 (81)
T 2ldm_A            6 EFQINEQVLASWS-D----SRFYPAKVTAVNK-DGTYTVKFYD--G-VVQTVKHIHVKAFSKDQ   60 (81)
Confidence            4788999999977 3    6899999999874 4689998777  4 35688889999999654

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}

Probab=93.14  E-value=0.57  Score=30.33  Aligned_cols=53  Identities=17%  Similarity=0.075  Sum_probs=43.5

Q ss_pred             cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712         42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT  103 (123)
Q Consensus        42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~  103 (123)
                      ..+.||+|-|+= ++    ..|-=|+|.+.+.+ +.|+|.=.|  | ..-+|..+.|.|+|+
T Consensus         6 ~~~vGd~vmArW-~D----~~yYpA~I~si~~~-~~Y~V~F~d--G-~~etvk~~~ikp~~~   58 (67)
T 3p8d_A            6 EFQINEQVLACW-SD----CRFYPAKVTAVNKD-GTYTVKFYD--G-VVQTVKHIHVKAFSK   58 (67)
T ss_dssp             CCCTTCEEEEEC-TT----SCEEEEEEEEECTT-SEEEEEETT--S-CEEEEEGGGEEECC-
T ss_pred             ccccCCEEEEEc-CC----CCEeeEEEEEECCC-CeEEEEEeC--C-ceEEEeHHHcccCCc
Confidence            578999999998 22    68999999999754 679998766  3 357999999999995

>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}

Probab=92.63  E-value=0.61  Score=31.63  Aligned_cols=57  Identities=18%  Similarity=0.073  Sum_probs=44.2

Q ss_pred             CCCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712         38 DPSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT  103 (123)
Q Consensus        38 ~~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~  103 (123)
                      +.....+.||+|-|+= ++    ..|-=|+|.+++.+ ..|.|.=-|  | ..-+|....|.|||.
T Consensus        17 ~~~~~f~vGd~VlArW-~D----~~yYPAkI~sV~~~-~~YtV~F~D--G-~~etvk~~~IKp~~~   73 (85)
T 3qii_A           17 GGSSEFQINEQVLACW-SD----CRFYPAKVTAVNKD-GTYTVKFYD--G-VVQTVKHIHVKAFSK   73 (85)
T ss_dssp             ----CCCTTCEEEEEC-TT----SCEEEEEEEEECTT-SEEEEEETT--S-CEEEEEGGGEEECC-
T ss_pred             cCCcccccCCEEEEEe-CC----CCEeeEEEEEECCC-CeEEEEEeC--C-CeEEecHHHcccCCh
Confidence            3456789999999999 32    68999999999754 679997766  3 457999999999995

>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=92.08  E-value=0.54  Score=31.84  Aligned_cols=55  Identities=20%  Similarity=0.213  Sum_probs=42.5

Q ss_pred             CcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712         41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP  102 (123)
Q Consensus        41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP  102 (123)
                      +..++|+.|||+...+    ..|--|+|++... ++.|+|.=+|=..  .-+++.++|-+||
T Consensus        31 ~~~~~G~~c~a~~~~d----~~wyRA~V~~~~~-~~~~~V~fvDyGn--~e~v~~~~Lr~l~   85 (110)
T 2diq_A           31 LTVHVGDIVAAPLPTN----GSWYRARVLGTLE-NGNLDLYFVDFGD--NGDCPLKDLRALR   85 (110)
T ss_dssp             CCCCTTCEEEECCTTT----CSCEEEEECCCCS-SSCEEEEETTTCC--EEEECGGGCEECC
T ss_pred             CCCCCCCEEEEEECCC----CeEEEEEEEEECC-CCeEEEEEEeCCC--eEEEehHHhhcCc
Confidence            4578999999988632    6899999999864 4789999888554  3467777777776

>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}

Probab=90.96  E-value=1.5  Score=32.36  Aligned_cols=55  Identities=18%  Similarity=0.170  Sum_probs=43.0

Q ss_pred             cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712         42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT  103 (123)
Q Consensus        42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~  103 (123)
                      ..+.|+.++|+...+    ..|--|+|++.. +++.++|.=+|=..  .-+++.++|-+||.
T Consensus        65 ~~~~G~~c~a~~~~d----~~wyRa~V~~~~-~~~~~~V~~vDyG~--~~~v~~~~l~~l~~  119 (201)
T 4b9w_A           65 KAEIGRPCCAFFSGD----GNWYRALVKEIL-PSGNVKVHFVDYGN--VEEVTTDQLQAILP  119 (201)
T ss_dssp             CCCTTCEEEEEETTT----TEEEEEEEEEEC-TTSCEEEEETTTCC--EEEECGGGEEECCG
T ss_pred             CCCCCCEEEEEECCC----CeEEEEEEEEEC-CCCeEEEEEEccCC--EEEEEHHHhccChH
Confidence            467899999998743    689999999975 45679999999654  34677888888873

>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}

Probab=90.61  E-value=1.5  Score=31.97  Aligned_cols=54  Identities=28%  Similarity=0.386  Sum_probs=42.6

Q ss_pred             CcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712         41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP  102 (123)
Q Consensus        41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP  102 (123)
                      +..++|+.|+|+...+    ..|.-|+|++...  +.++|.=+|-..  .-+++.++|-+||
T Consensus        50 ~~~~~g~~c~a~~~~d----~~wyRa~V~~v~~--~~~~V~~vDyG~--~~~v~~~~l~~l~  103 (218)
T 2wac_A           50 YTPKRGDLVAAQFTLD----NQWYRAKVERVQG--SNATVLYIDYGN--KETLPTNRLAALP  103 (218)
T ss_dssp             CCCCTTCEEEEECTTT----CCEEEEEEEEEET--TEEEEEETTTCC--EEEEEGGGEEECC
T ss_pred             ccCCcCCEEEEEECCC----CeEEEEEEEEecC--CeEEEEEEecCC--eEEEchHHcccCC
Confidence            4578999999998732    6899999999864  889998888654  3467777788877

>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*

Probab=88.79  E-value=0.72  Score=38.20  Aligned_cols=66  Identities=18%  Similarity=0.174  Sum_probs=49.0

Q ss_pred             CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCC-CceeEecCCceeeCCCCCCCCCC
Q psy11712         40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQ-KGPHQLSRKQIIPLPTKRANPET  110 (123)
Q Consensus        40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~-k~r~~ls~~~IIPLP~~ka~P~t  110 (123)
                      ...+++|+.|-|.-..+    ...--|+|++- ..+++|.|.=+||++ .....++||.|||+|.--|||.+
T Consensus       455 ~~~~~~~~~v~a~~p~t----t~fy~a~v~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  521 (522)
T 3mp6_A          455 TKNYPPGTKVLARYPET----TTFYPAIVIGT-KRDGTCRLRFDGEEEVDKETEVTRRLVLPSPTALANLAR  521 (522)
T ss_dssp             CCCCCTTCEEEEECTTC----SEEEEEEEEEE-CTTSCEEEEETTC----CCEEECGGGEEECHHHHC----
T ss_pred             ccCCCCCCEEEEECCCC----cceEeEEEecC-CCCCeEEEEecCCCCCCccccccceeEEecCchhccccc
Confidence            45689999999998853    67889999995 566789998887663 34478999999999987777753

>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}

Probab=88.42  E-value=2  Score=32.29  Aligned_cols=54  Identities=19%  Similarity=0.172  Sum_probs=42.3

Q ss_pred             cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712         42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP  102 (123)
Q Consensus        42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP  102 (123)
                      ..++|+.++|+...+    ..|--|.|++.. +++.++|.=+|-..  .-+++.++|-+||
T Consensus        65 ~~~~G~~c~a~~~~d----~~WyRa~V~~~~-~~~~~~V~~vDyGn--~~~v~~~~l~~l~  118 (226)
T 4b9x_A           65 KAEIGRPCCAFFSGD----GNWYRALVKEIL-PSGNVKVHFVDYGN--VEEVTTDQLQAIL  118 (226)
T ss_dssp             CCCTTCEEEEEETTT----TEEEEEEEEEEC-SSSEEEEECTTTCC--EEEEEGGGEECCC
T ss_pred             CCCCCCEEEEEECCC----CeEEEEEEEEEC-CCCeEEEEEEecCC--EEEEEHHHhccCh
Confidence            457899999998743    689999999975 45679999998654  3467777888887

>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A

Probab=87.52  E-value=2.7  Score=31.80  Aligned_cols=61  Identities=13%  Similarity=0.178  Sum_probs=42.8

Q ss_pred             CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCC-CCceEEeecCCCCCc----eeEecCCceeeCCCC
Q psy11712         40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNAS-TRTYEVIDIDDVQKG----PHQLSRKQIIPLPTK  104 (123)
Q Consensus        40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~-~~~YeV~D~Dee~k~----r~~ls~~~IIPLP~~  104 (123)
                      ...+.+|++|-|+-..+    ...--|+|++--.+ .+.|.|.=+||+...    .-.+++|.||++|..
T Consensus       114 ~~~f~~G~~VLAlYP~T----T~FY~A~V~~~p~~~~~~y~L~FEdde~~dG~sp~~~V~~RyVv~~ke~  179 (180)
T 3mea_A          114 EALFQKEQLVLALYPQT----TCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEP  179 (180)
T ss_dssp             GGSCCTTCEEEEECTTS----SEEEEEEEEECCSSTTCCEEEEEBCTTSTTSBCCCEEECGGGEEEC---
T ss_pred             cccCCCCCEEEEeCCCC----ceeeEEEEecCCCCCCCcEEEEEcCCCccCCCCCCcEecceEEEccCCC
Confidence            34589999999998853    67899999995332 368998755543221    257899999999854

>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*

Probab=85.87  E-value=4.7  Score=29.00  Aligned_cols=52  Identities=19%  Similarity=0.125  Sum_probs=38.7

Q ss_pred             cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712         42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP  102 (123)
Q Consensus        42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP  102 (123)
                      ..++|+.+||+...+    +.|--|+|.+... ++.++|.=+|=...+.  +  ++|-+||
T Consensus        47 ~~~~G~~c~A~~~~d----~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~--v--~~lr~l~   98 (169)
T 3ntk_A           47 DLKEGALCVAQFPED----EVFYRAQIRKVLD-DGKCEVHFIDFGNNAV--T--QQFRQLP   98 (169)
T ss_dssp             CCCTTCEEEEEETTT----TEEEEEEEEEECS-TTCEEEEETTTTEEEE--E--SCEECCC
T ss_pred             CCCCCCEEEEEECCC----CcEEEEEEEEECC-CCEEEEEEEecCCeEE--h--hhhhccC
Confidence            578999999998642    6899999999865 3479999888544332  2  5666666

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=83.29  E-value=7.1  Score=27.89  Aligned_cols=64  Identities=17%  Similarity=0.162  Sum_probs=40.2

Q ss_pred             CCCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCCC
Q psy11712         39 PSHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPTK  104 (123)
Q Consensus        39 ~~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~~  104 (123)
                      .+..+..||+|-++.+.++.+.--|-+|+|+..-  .+.|-|.=..=+..-.=.++..+|=|+|..
T Consensus        57 ~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k--g~f~~V~y~~~~~~~~EiV~~~rlR~~n~~  120 (128)
T 3h8z_A           57 YNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK--GDFYVIEYAACDATYNEIVTLERLRPVNPN  120 (128)
T ss_dssp             ---CCCTTCEEEEEECC---CCCEEEEEEEEEEE--TTEEEEEETTC----CEEECGGGEEECCCC
T ss_pred             cccCCCCCCEEEEEecCCCCCcCccEEEEEEEee--CCEEEEEEcCCCCCcceEEehhheEeCCCC
Confidence            3456899999999999765443469999999964  466776633312222346778888888754

>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B

Probab=82.11  E-value=6.8  Score=29.36  Aligned_cols=55  Identities=22%  Similarity=0.239  Sum_probs=41.7

Q ss_pred             CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712         40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP  102 (123)
Q Consensus        40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP  102 (123)
                      .+..++|+.++|+.. +    ..|--|.|++... .+.++|.=+|-..  .-+++.++|-+||
T Consensus        63 ~~~~~~G~~c~a~~~-d----~~wyRa~V~~~~~-~~~~~V~~vDyGn--~~~v~~~~lr~l~  117 (246)
T 2hqx_A           63 SYAPRRGEFCIAKFV-D----GEWYRARVEKVES-PAKIHVFYIDYGN--REVLPSTRLGTLS  117 (246)
T ss_dssp             TCCCCTTCEEEEECT-T----SCEEEEEEEEEEE-TTEEEEEETTTCC--EEEECGGGEECCC
T ss_pred             CCCCCCCCEEEEEcC-C----CCEEEEEEEEEcC-CCeEEEEEEeCCC--eEEEeHHHhhcCC
Confidence            345679999999987 2    6899999999864 4689998888543  3466677777776

>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=80.79  E-value=9.3  Score=24.84  Aligned_cols=56  Identities=16%  Similarity=0.208  Sum_probs=46.6

Q ss_pred             CcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712         41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT  103 (123)
Q Consensus        41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~  103 (123)
                      .....||.|-||=.++    ..+.=|+|++++..+.-|+|.==|  | ..-+|..+.|=|+|.
T Consensus        11 ~~f~vgd~VmaRW~Gd----~~yYparItSits~~~~Y~VkfKd--g-T~e~L~~kDIKp~~~   66 (68)
T 2dig_A           11 RKFADGEVVRGRWPGS----SLYYEVEILSHDSTSQLYTVKYKD--G-TELELKENDIKSGPS   66 (68)
T ss_dssp             CSSCSSCEEEEECTTT----CCEEEEEEEEEETTTTEEEEECTT--S-CEEEEETTTEECCCC
T ss_pred             eEeecCCEEEEEccCC----ccceEEEEEEeccCCceEEEEecC--C-CEEEechhccccCCC
Confidence            4688999999998842    679999999999999999997666  2 246899999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d2d9ta1	60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	96.37
d1mhna_	59	Survival motor neuron protein 1, smn {Human (Homo	95.13
d2diqa1	97	Tudor and KH domain-containing protein TDRKH {Huma	93.91
d2hqxa1	90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	93.45
d2diga1	55	Lamin-b receptor {Human (Homo sapiens) [TaxId: 960	89.33

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.01  Score=35.47  Aligned_cols=56  Identities=25%  Similarity=0.154  Sum_probs=46.7

Q ss_pred             cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712         42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT  103 (123)
Q Consensus        42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~  103 (123)
                      .-++|+.++|+-..+    ..|--|.|.+.+.+++.++|.=+|=..  .-+++.++|-|||.
T Consensus         2 ~wkvG~~c~A~~~~D----~~wYRA~I~~i~~~~~~~~V~fvDYGn--~e~v~~~~lr~l~~   57 (60)
T d2d9ta1           2 VWKPGDECFALYWED----NKFYRAEVEALHSSGMTAVVKFTDYGN--YEEVLLSNIKPVQT   57 (60)
T ss_dssp             CCCTTCEEEEECTTT----CCEEEEEEEEECSSSSEEEEEETTTTE--EEEEEGGGEEECCC
T ss_pred             ccCcCCEEEEEECCC----CCEEEEEEEEEcCCCCEEEEEEECCCC--EEEEcHHHcCcCCC
Confidence            458999999998632    689999999998888889998888643  46899999999993

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.056  Score=32.08  Aligned_cols=55  Identities=11%  Similarity=0.017  Sum_probs=44.1

Q ss_pred             cCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712         42 IANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP  102 (123)
Q Consensus        42 ~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP  102 (123)
                      ..++|+.++|+-..+    ..|--|.|.+.+.+++.|+|.=+|=..  .-+++.++|.|+.
T Consensus         3 ~wkvG~~C~A~~s~D----g~wYRA~I~~v~~~~~~~~V~fvDYGn--~e~V~~~~l~~~~   57 (59)
T d1mhna_           3 QWKVGDKCSAIWSED----GCIYPATIASIDFKRETCVVVYTGYGN--REEQNLSDLLSPI   57 (59)
T ss_dssp             CCCTTCEEEEECTTT----SCEEEEEEEEEETTTTEEEEEETTTTE--EEEEEGGGCBCTT
T ss_pred             cCCcCCEEEEEECCC----CCEEEEEEEEEcCCCCEEEEEEEeCCC--EEEEEHHHCcCCC
Confidence            457999999998632    689999999998888999998888543  3577888887764

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.11  Score=32.49  Aligned_cols=56  Identities=20%  Similarity=0.220  Sum_probs=44.6

Q ss_pred             CcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCCC
Q psy11712         41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLPT  103 (123)
Q Consensus        41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP~  103 (123)
                      ...+.|+.++|+...+    ..|--|.|++.. ++++|+|.=+|-..  .-+++.++|-+||.
T Consensus        24 ~~~~~G~~~~a~~~~d----~~wyRa~V~~~~-~~~~~~V~~vDyG~--~~~v~~~~l~~l~~   79 (97)
T d2diqa1          24 LTVHVGDIVAAPLPTN----GSWYRARVLGTL-ENGNLDLYFVDFGD--NGDCPLKDLRALRS   79 (97)
T ss_dssp             CCCCTTCEEEECCTTT----CSCEEEEECCCC-SSSCEEEEETTTCC--EEEECGGGCEECCH
T ss_pred             CCCCCCCEEEEEECCC----CeEEEEEEEEEC-CCCEEEEEEEeeCC--EEEEeHHHhhccCH
Confidence            3577899999987632    689999999975 45679999999763  46788899988884

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.25  Score=31.07  Aligned_cols=54  Identities=22%  Similarity=0.237  Sum_probs=41.7

Q ss_pred             CcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecCCCCCceeEecCCceeeCC
Q psy11712         41 HIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDIDDVQKGPHQLSRKQIIPLP  102 (123)
Q Consensus        41 ~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~Dee~k~r~~ls~~~IIPLP  102 (123)
                      +..+.|+.++|+.. +    ..|--|.|++.. +.+.++|.=+|=..  .-+++.++|-+||
T Consensus        24 ~~p~~G~~c~a~~~-D----~~wyRa~V~~~~-~~~~~~V~~vDyG~--~~~v~~~~l~~l~   77 (90)
T d2hqxa1          24 YAPRRGEFCIAKFV-D----GEWYRARVEKVE-SPAKIHVFYIDYGN--REVLPSTRLGTLS   77 (90)
T ss_dssp             CCCCTTCEEEEECT-T----SCEEEEEEEEEE-ETTEEEEEETTTCC--EEEECGGGEECCC
T ss_pred             cCCCCCCEEEEEEc-C----CCEEEEEEEEeC-CCCeEEEEEEeCCC--CEEEEHHHeeECC
Confidence            34478999999874 2    579999999986 34679999888653  4577888888887

>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Lamin-b receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.33  E-value=0.74  Score=27.34  Aligned_cols=41  Identities=17%  Similarity=0.216  Sum_probs=35.6

Q ss_pred             CCcCCCCCeEEEEeccCCCCCCceEEEEEeeeeCCCCceEEeecC
Q psy11712         40 SHIANRGDMVAALVRNVEDNEDNWILAEVVNYNASTRTYEVIDID   84 (123)
Q Consensus        40 ~~~~~~Gd~VAA~v~~~~~~~~~WILA~Vv~~~~~~~~YeV~D~D   84 (123)
                      +.....|+-|-.|-.+.    .-|.-.+|++||..++.|.|.=-|
T Consensus         3 ~~k~~~Ge~vm~RwPgS----sLyyev~vls~d~~~~~YtV~ykD   43 (55)
T d2diga1           3 SRKFADGEVVRGRWPGS----SLYYEVEILSHDSTSQLYTVKYKD   43 (55)
T ss_dssp             CCSSCSSCEEEEECTTT----CCEEEEEEEEEETTTTEEEEECTT
T ss_pred             cccccCCcEEEeecCCC----ceEEEEEEEeecCcceEEEEEecC
Confidence            35688999999998863    689999999999999999998665