Psyllid ID: psy11741
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | 2.2.26 [Sep-21-2011] | |||||||
| Q5M8E6 | 337 | Methyltransferase-like pr | yes | N/A | 0.815 | 0.851 | 0.533 | 2e-93 | |
| Q86BS6 | 325 | Methyltransferase-like pr | yes | N/A | 0.801 | 0.867 | 0.524 | 8e-92 | |
| A8KBL7 | 353 | Methyltransferase-like pr | yes | N/A | 0.812 | 0.810 | 0.501 | 8e-90 | |
| Q8BMK1 | 389 | Methyltransferase-like pr | yes | N/A | 0.815 | 0.737 | 0.473 | 5e-88 | |
| Q5ZHP8 | 370 | Methyltransferase-like pr | yes | N/A | 0.832 | 0.791 | 0.452 | 4e-83 | |
| Q08641 | 628 | Uncharacterized methyltra | yes | N/A | 0.789 | 0.442 | 0.455 | 9e-69 | |
| Q9P7L6 | 307 | Uncharacterized methyltra | yes | N/A | 0.812 | 0.931 | 0.423 | 3e-66 | |
| Q6P1Q9 | 378 | Methyltransferase-like pr | no | N/A | 0.542 | 0.505 | 0.596 | 9e-66 | |
| Q96IZ6 | 378 | Methyltransferase-like pr | no | N/A | 0.542 | 0.505 | 0.596 | 1e-65 | |
| Q0P5B2 | 378 | Methyltransferase-like pr | yes | N/A | 0.542 | 0.505 | 0.586 | 3e-65 |
| >sp|Q5M8E6|METL2_XENTR Methyltransferase-like protein 2 OS=Xenopus tropicalis GN=mettl2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 342 bits (878), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/317 (53%), Positives = 211/317 (66%), Gaps = 30/317 (9%)
Query: 8 RPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQTLNEDVAK 67
RPQFGNR L + S VFQHNAWD+VQW EEQE A K V+ NSV + + +
Sbjct: 5 RPQFGNRHLDDPSRVFQHNAWDNVQWSEEQESAAHKKVQENSVQPLPLEKQEEYENKASN 64
Query: 68 NWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDT---------------------- 105
WD FY +H+NRFFKDRHWLFTEF E + SST+T T
Sbjct: 65 FWDDFYTIHENRFFKDRHWLFTEFPE-LSSRSSTQTGTESQEGQVMQLNGCQEETERADV 123
Query: 106 -------CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158
+T I+E+GCGVGN+VFPI+++ + +FVY CDFS AV ++K +E Y P
Sbjct: 124 ENPFPGASATYRIMEVGCGVGNTVFPILQNNTDPGLFVYCCDFSSTAVELVKSNELYSPS 183
Query: 159 RCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218
RC AFV DV+ E + P SLD+++LIFVL AINP KMQ+VI+++ LKPGG +L R
Sbjct: 184 RCFAFVHDVSDEQSSFPMPEHSLDVIVLIFVLSAINPAKMQNVISRLSSLLKPGGCILLR 243
Query: 219 DYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQ 278
DYGRYD+ QLRFKKGRCL +NFY RGDGT VYFFT++++ T+F SAG + QN +DRRLQ
Sbjct: 244 DYGRYDMAQLRFKKGRCLAENFYVRGDGTRVYFFTQDDLDTLFISAGLQKVQNTVDRRLQ 303
Query: 279 VNRGKQIKMYRVWIQAK 295
VNRGKQ+ MYRVWIQ K
Sbjct: 304 VNRGKQLTMYRVWIQCK 320
|
Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q86BS6|METL_DROME Methyltransferase-like protein OS=Drosophila melanogaster GN=metl PE=1 SV=2 | Back alignment and function description |
|---|
Score = 337 bits (864), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 149/284 (52%), Positives = 199/284 (70%), Gaps = 2/284 (0%)
Query: 12 GNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQTLNEDVAKNWDA 71
G+RVL + VF+ NAWDHVQWDEEQE A+ V NS +++ + D K WD+
Sbjct: 39 GSRVLTDAREVFEFNAWDHVQWDEEQELAAKAAVAKNSTSKMEAEQKERFQTDAPKFWDS 98
Query: 72 FYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKN 131
FY +H NRFFKDRHWLFTEF E+ PL++ + ++I E+GCGVGN++ P++++
Sbjct: 99 FYGIHDNRFFKDRHWLFTEFPELA-PLAA-DSAVLQPRSIFELGCGVGNTILPLLQYSSE 156
Query: 132 DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLD 191
+ V+GCDFS A+ IL+ ++ RC FV D T + W PF S DI+++IFVL
Sbjct: 157 PQLKVFGCDFSARAIEILRSQRQFDEKRCEVFVMDATLDHWQVPFEENSQDIIVMIFVLS 216
Query: 192 AINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYF 251
AI P KMQ V++ Y+YL+PGG++LFRDYGRYDL QLRFK G+C++DNFY RGDGT+VYF
Sbjct: 217 AIEPKKMQRVLDNCYRYLRPGGLLLFRDYGRYDLAQLRFKSGKCMEDNFYVRGDGTMVYF 276
Query: 252 FTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAK 295
FT EE++ M AG E+Q ++DRRLQVNR + +KMYRVWIQ K
Sbjct: 277 FTEEELRGMMTQAGLQEEQLIVDRRLQVNRCRGLKMYRVWIQTK 320
|
Probable methyltransferase. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A8KBL7|MEL2A_DANRE Methyltransferase-like protein 2-A OS=Danio rerio GN=mettl2a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 330 bits (847), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 158/315 (50%), Positives = 208/315 (66%), Gaps = 29/315 (9%)
Query: 8 RPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQA-RKLVENNSVLQIDKNLIQTLNEDVA 66
RPQFG R L + VFQHNAWD+V+W EQE+ A +K+ EN+ L +K + +
Sbjct: 33 RPQFGTRFLTDPRQVFQHNAWDNVEWSAEQEEAALKKVQENSQPLPAEKQ--EEFDNRAN 90
Query: 67 KNWDAFYNVHQNRFFKDRHWLFTEFTEI--------------------------IEPLSS 100
+ W+ FY +H+NRFFKDRHWLFTEF E+ + P
Sbjct: 91 EYWNDFYTIHENRFFKDRHWLFTEFPELAPQQKHLRGAEEKESLEHMLNGEDISLNPTHD 150
Query: 101 TKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC 160
++ ILE+GCGVGN+VFPI++ + +FVY CDFS AV+++K + EY P RC
Sbjct: 151 EFPGASASYRILEVGCGVGNTVFPILKTNNDPGLFVYCCDFSSTAVDLVKSNPEYDPSRC 210
Query: 161 HAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220
HAFV D++ E P SLD+++LIFVL A++P KMQ IN++ + LKPGG++L RDY
Sbjct: 211 HAFVHDMSDESGEYPMPDHSLDVIVLIFVLSALHPEKMQKSINRLGRLLKPGGVLLLRDY 270
Query: 221 GRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVN 280
GRYD+ QLRFKKGRCL +NFY RGDGT VYFFT++E+ +F SAG + QNL+DRRLQVN
Sbjct: 271 GRYDMAQLRFKKGRCLSENFYVRGDGTRVYFFTQDELHDLFSSAGLEKLQNLVDRRLQVN 330
Query: 281 RGKQIKMYRVWIQAK 295
RGKQ+ MYRVW+Q K
Sbjct: 331 RGKQLTMYRVWVQCK 345
|
Probable methyltransferase. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8BMK1|METL2_MOUSE Methyltransferase-like protein 2 OS=Mus musculus GN=Mettl2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 325 bits (832), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 164/346 (47%), Positives = 212/346 (61%), Gaps = 59/346 (17%)
Query: 8 RPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQA-RKLVENNSVLQIDKNLIQTLNEDVA 66
RPQFG+R L + + VF HNAWD+V+W EEQ A RK+ EN+S L + + +
Sbjct: 17 RPQFGHRFLSDPARVFHHNAWDNVKWSEEQAAAAERKVQENSSPLVCPEKQVD-YEVNAH 75
Query: 67 KNWDAFYNVHQNRFFKDRHWLFTEFTEIIE--------PLSSTKTDTC------------ 106
K WD FY +H+N FFKDRHWLFTEF E+ PL ++D C
Sbjct: 76 KYWDDFYRIHENGFFKDRHWLFTEFPELAPSHSHLTGVPLEKQRSDVCEDGPGLTAEQHK 135
Query: 107 -------------------------------------STKNILEIGCGVGNSVFPIVEHC 129
+T ILE+GCGVGN+VFPI++
Sbjct: 136 CSCASPGCETQVPPLEEPVTQKLGHLEISGEEFPGSSATYRILEVGCGVGNTVFPILQTN 195
Query: 130 KNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189
N N+FVY CDFS A+ +LK + +Y P RC+AFV D+ ED + P +SLD+++LIFV
Sbjct: 196 NNPNLFVYCCDFSATAIELLKTNSQYDPSRCYAFVHDLCDEDQSYPVPEDSLDVIVLIFV 255
Query: 190 LDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLV 249
L AI P+KMQ I+++ + LKPGG++L RDYGRYD+ QLRFKKG+CL NFY RGDGT V
Sbjct: 256 LSAIVPDKMQKAISKLSRLLKPGGVMLLRDYGRYDMAQLRFKKGQCLSGNFYVRGDGTRV 315
Query: 250 YFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAK 295
YFFT+ E+ T+F +AG + QNL+DRRLQVNRGKQ+ MYRVWIQ K
Sbjct: 316 YFFTQGELDTLFTAAGLEKVQNLVDRRLQVNRGKQLTMYRVWIQCK 361
|
Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5ZHP8|METL2_CHICK Methyltransferase-like protein 2 OS=Gallus gallus GN=METTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (789), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 161/356 (45%), Positives = 207/356 (58%), Gaps = 63/356 (17%)
Query: 3 ETGEVRPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQTLN 62
E E R FG R L + + +FQHNAWD+V+W EEQE A+ V+ NS + ++ +
Sbjct: 6 EAPERRRPFGRRFLTDPTRLFQHNAWDNVEWSEEQEATAKSKVQENSSQLLPQDKQEEYE 65
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEII-----------------------EPLS 99
+ + WD FY +H+N FFKDRHWLFTEF E+ E L
Sbjct: 66 VNAKRYWDDFYKIHENGFFKDRHWLFTEFPELAPNRNPSQNEDSLCEFSCKEVSKNEGLG 125
Query: 100 STKTDTCSTKN----------------------------------------ILEIGCGVG 119
S + C+ +N ILE+GCG G
Sbjct: 126 SCENGHCTLENRAENQLNLLKSSPRFCTEELAPQKLKQSYEDYPGSSASYRILEVGCGAG 185
Query: 120 NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPE 179
N+VFPI++ + +FVY CDFS AV++++ + EY RC AFV D+ ++ P E
Sbjct: 186 NTVFPILQTNNDPGLFVYCCDFSTTAVDLVQSNVEYDSSRCFAFVHDLCNDQSPFPMPDE 245
Query: 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDN 239
SLDIV+LIFVL AI P KMQ VIN++ + LKPGGM+L RDYGRYDL QLRFKKG+CL N
Sbjct: 246 SLDIVILIFVLSAILPEKMQCVINKLSRLLKPGGMILLRDYGRYDLAQLRFKKGQCLSAN 305
Query: 240 FYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAK 295
FY RGDGT VYFFT++E+ +F AG + QNL+DRRLQVNRGKQ+ MYRVWIQ K
Sbjct: 306 FYVRGDGTRVYFFTQDELDDLFTRAGLQKIQNLVDRRLQVNRGKQMTMYRVWIQCK 361
|
Probable methyltransferase. Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q08641|AB140_YEAST Uncharacterized methyltransferase ABP140 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ABP140 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 260 bits (665), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 132/290 (45%), Positives = 188/290 (64%), Gaps = 12/290 (4%)
Query: 10 QFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVE---NNSVLQIDKNLIQTLNEDVA 66
+FG R L E+S+V+ HNAWD+V+W EEQ QQA + ++ + V + DK L NE+ A
Sbjct: 340 EFGKRNLTEESDVWDHNAWDNVEWGEEQVQQAEEKIKEQFKHPVPEFDKKL---YNENPA 396
Query: 67 KNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIV 126
+ WD FY ++ FFKDR WL EF + +ST+ D I EIGCG GN+ FPI+
Sbjct: 397 RYWDIFYKNNKENFFKDRKWLQIEFPIL---YASTRKD-AEPVTIFEIGCGAGNTFFPIL 452
Query: 127 EHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP--FAPESLDIV 184
+ +N+N+ + DF+ AV ++K E++ P HA V D+ + D N P P S+DI
Sbjct: 453 KDNENENLRIIAADFAPRAVELVKNSEQFNPKYGHATVWDLANPDGNLPDGVEPHSVDIA 512
Query: 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARG 244
++IFV A+ PN+ ++ ++K LKPGG ++FRDYG YDL Q+RFKK R L++NFY RG
Sbjct: 513 VMIFVFSALAPNQWDQAMDNLHKILKPGGKIIFRDYGAYDLTQVRFKKNRILEENFYVRG 572
Query: 245 DGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQA 294
DGT VYFF+ E+++ +F F+E + DRRL VNR +Q+KMYR W+QA
Sbjct: 573 DGTRVYFFSEEKLREIFTKKYFLENKIGTDRRLLVNRKRQLKMYRCWVQA 622
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Potential methyltransferase (By similarity). Binds F-actin and shows weak F-actin cross-linking activity. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9P7L6|METL_SCHPO Uncharacterized methyltransferase-like protein SPBC21C3.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC21C3.07c PE=3 SV=2 | Back alignment and function description |
|---|
Score = 252 bits (644), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 125/295 (42%), Positives = 184/295 (62%), Gaps = 9/295 (3%)
Query: 2 EETGEVRPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQI-DKNLIQT 60
E T + FG R+L E+ +VF+ NAWDHV+WD+E A+K +E + + +K+ T
Sbjct: 18 EATFSINESFGGRLLTEEEDVFEQNAWDHVEWDDEHLALAKKCIEEQKLYPVTEKDAYMT 77
Query: 61 LNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGN 120
E + WD FY ++ +FF +R W+ EF E+++ L + K+ILEIGCG GN
Sbjct: 78 HPE---RYWDQFYGKNEGKFFMNRRWIAQEFPELLDLLK----EDAGEKSILEIGCGAGN 130
Query: 121 SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPES 180
+++PI++ KN N+ ++ D+SE A++++K++ Y C A V D+ D S
Sbjct: 131 TIWPILKENKNSNLKIFAVDYSEKAIDVVKQNPLYDAKFCSASVWDLAGSDLLRSIEEAS 190
Query: 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNF 240
+D + LIF A++P++ Q I +Y+ LKPGG++LFRDYGR DL QLR KK R L +NF
Sbjct: 191 IDAITLIFCFSALSPDQWQQAIENLYRLLKPGGLILFRDYGRLDLTQLRAKKNRILSENF 250
Query: 241 YARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAK 295
Y RGDGT VY+ T EE+ +F F QN +D+RL VNR K++KMYR W+QAK
Sbjct: 251 YIRGDGTRVYYMTNEELVDVF-GKNFKIIQNGVDKRLIVNRKKRVKMYRCWLQAK 304
|
Potential methyltransferase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6P1Q9|MET2B_HUMAN Methyltransferase-like protein 2B OS=Homo sapiens GN=METTL2B PE=1 SV=3 | Back alignment and function description |
|---|
Score = 251 bits (640), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 114/191 (59%), Positives = 146/191 (76%)
Query: 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFV 164
+ +T ILE+GCGVGN+VFPI++ + +FVY CDFS A+ +++ + EY P RC AFV
Sbjct: 178 SSATYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFV 237
Query: 165 CDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224
D+ E+ + P SLDI++LIFVL A+ P+KMQ IN++ + LKPGGMVL RDYGRYD
Sbjct: 238 HDLCDEEKSYPVPKGSLDIIILIFVLSAVVPDKMQKAINRLSRLLKPGGMVLLRDYGRYD 297
Query: 225 LVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQ 284
+ QLRFKKG+CL NFY RGDGT VYFFT+EE+ T+F +AG + QNL+DRRLQVNRGKQ
Sbjct: 298 MAQLRFKKGQCLSGNFYVRGDGTRVYFFTQEELDTLFTTAGLEKVQNLVDRRLQVNRGKQ 357
Query: 285 IKMYRVWIQAK 295
+ MYRVWIQ K
Sbjct: 358 LTMYRVWIQCK 368
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q96IZ6|MET2A_HUMAN Methyltransferase-like protein 2A OS=Homo sapiens GN=METTL2A PE=2 SV=5 | Back alignment and function description |
|---|
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/191 (59%), Positives = 146/191 (76%)
Query: 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFV 164
+ +T ILE+GCGVGN+VFPI++ + +FVY CDFS A+ +++ + EY P RC AFV
Sbjct: 178 SSATYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFV 237
Query: 165 CDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224
D+ E+ + P SLDI++LIFVL AI P+KMQ IN++ + LKPGGM+L RDYGRYD
Sbjct: 238 HDLCDEEKSYPVPKGSLDIIILIFVLSAIVPDKMQKAINRLSRLLKPGGMMLLRDYGRYD 297
Query: 225 LVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQ 284
+ QLRFKKG+CL NFY RGDGT VYFFT+EE+ T+F +AG + QNL+DRRLQVNRGKQ
Sbjct: 298 MAQLRFKKGQCLSGNFYVRGDGTRVYFFTQEELDTLFTTAGLEKVQNLVDRRLQVNRGKQ 357
Query: 285 IKMYRVWIQAK 295
+ MYRVWIQ K
Sbjct: 358 LTMYRVWIQCK 368
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q0P5B2|METL2_BOVIN Methyltransferase-like protein 2 OS=Bos taurus GN=METTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (636), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 112/191 (58%), Positives = 148/191 (77%)
Query: 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFV 164
+ +T ILE+GCGVGN+VFPI++ + ++FVY CDFS AV +++ + Y P RC AFV
Sbjct: 178 SSATYRILEVGCGVGNTVFPILQTNNDPSLFVYCCDFSSTAVELVQTNSAYDPSRCFAFV 237
Query: 165 CDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224
D+ ED + P SLD+++LIFVL AI P+KMQ+ IN++ + LKPGG++L RDYGRYD
Sbjct: 238 HDLCDEDKSYPMPENSLDVIILIFVLSAIVPDKMQNAINRLSRLLKPGGIMLLRDYGRYD 297
Query: 225 LVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQ 284
+ QLRFKKG+CL +NFY RGDGT VYFFT++E+ T+F +AG + QNL+DRRLQVNRGKQ
Sbjct: 298 MAQLRFKKGQCLSENFYVRGDGTRVYFFTQDELDTLFTTAGLEKVQNLVDRRLQVNRGKQ 357
Query: 285 IKMYRVWIQAK 295
+ MYRVWIQ K
Sbjct: 358 LTMYRVWIQCK 368
|
Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | ||||||
| 427794831 | 350 | Hypothetical protein, partial [Rhipiceph | 0.897 | 0.902 | 0.535 | 1e-106 | |
| 350398973 | 332 | PREDICTED: methyltransferase-like protei | 0.832 | 0.882 | 0.581 | 1e-105 | |
| 158295100 | 336 | AGAP005973-PA [Anopheles gambiae str. PE | 0.832 | 0.872 | 0.549 | 1e-102 | |
| 380030445 | 332 | PREDICTED: methyltransferase-like protei | 0.832 | 0.882 | 0.575 | 1e-102 | |
| 383861180 | 331 | PREDICTED: methyltransferase-like protei | 0.818 | 0.870 | 0.584 | 1e-102 | |
| 66564357 | 332 | PREDICTED: methyltransferase-like isofor | 0.832 | 0.882 | 0.566 | 1e-101 | |
| 357612545 | 324 | hypothetical protein KGM_06266 [Danaus p | 0.832 | 0.904 | 0.544 | 1e-101 | |
| 170045964 | 325 | conserved hypothetical protein [Culex qu | 0.835 | 0.904 | 0.548 | 1e-101 | |
| 157115133 | 339 | hypothetical protein AaeL_AAEL007084 [Ae | 0.815 | 0.846 | 0.551 | 1e-101 | |
| 242011772 | 300 | conserved hypothetical protein [Pediculu | 0.821 | 0.963 | 0.580 | 1e-101 |
| >gi|427794831|gb|JAA62867.1| Hypothetical protein, partial [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 244/353 (69%), Gaps = 37/353 (10%)
Query: 8 RPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQTLNEDVAK 67
RPQFG R L +DS VF+HNAWD + W EEQ + A++ V+ NSV++++ + + A+
Sbjct: 9 RPQFGQRYLDDDSRVFEHNAWDDICWTEEQLKAAKQKVDENSVVRVEPAVRDQYEAEAAQ 68
Query: 68 NWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTK-----------TDTCSTKNILEIGC 116
WD FY +H NRFFKDRHWLF EF E++ +S K ++ ILEIGC
Sbjct: 69 YWDKFYGIHSNRFFKDRHWLFVEFPELLPGNASAKEAPQDGGTEEYPGKAASLRILEIGC 128
Query: 117 GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF 176
GVGN+VFPI+E ++ +FVYGCDFS AV++LKEH+ Y RC+AFVCDVT + W+ PF
Sbjct: 129 GVGNTVFPILEVNRDSGLFVYGCDFSPTAVSVLKEHKNYDEKRCYAFVCDVT-KTWDVPF 187
Query: 177 APESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCL 236
ESLD V+LIFVL AI+P++MQHVI+ V +YLKPGG V+FRDYGRYD+ QLRFK GRC+
Sbjct: 188 PEESLDYVMLIFVLSAISPDRMQHVIDSVARYLKPGGKVIFRDYGRYDMAQLRFKNGRCI 247
Query: 237 QDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKS 296
+DNFYARGDGT VYFFT++E+ MF +GF E+QN +DRRLQVNRGK ++MYRVWIQA+
Sbjct: 248 EDNFYARGDGTRVYFFTQDELTRMFSKSGFEEEQNHLDRRLQVNRGKLLRMYRVWIQAR- 306
Query: 297 YFVHYLFVTEEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKYMK 349
+ +E QVNRGK ++MYRVWIQA+Y K
Sbjct: 307 ------YRKKEATX------------------QVNRGKLLRMYRVWIQARYRK 335
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350398973|ref|XP_003485369.1| PREDICTED: methyltransferase-like protein 2-A-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/318 (58%), Positives = 226/318 (71%), Gaps = 25/318 (7%)
Query: 3 ETGEVRPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQTLN 62
E + RPQFGNRVL N+FQHNAWD+V WDEEQ++ A+ V NS + + IQ
Sbjct: 12 ELNDKRPQFGNRVLSSSDNIFQHNAWDNVVWDEEQQKLAQLKVNENSTIILSDERIQEYE 71
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEII---------EPLSSTKTDTC------- 106
K WD FY +H+N+FFKDRHWLFTEF E+ +PL ST +T
Sbjct: 72 SKADKYWDKFYGIHENKFFKDRHWLFTEFPELAADIVKQNVKQPLRSTTENTSENNQGSH 131
Query: 107 ---------STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP 157
+ ILEIGCGVGN+VFPI+ + K+ N+FVY CDFS+ A++ILK++ Y
Sbjct: 132 IKILDLPNKNGNKILEIGCGVGNTVFPILLYNKDPNLFVYCCDFSDKAIDILKQNSSYDT 191
Query: 158 DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
RC AFV DV E W PFAPESLDI++LIFVL AI+P KM+HVI Q++KYLKPGG+VLF
Sbjct: 192 SRCKAFVLDVIQEKWETPFAPESLDIIVLIFVLSAIHPEKMKHVIQQIHKYLKPGGLVLF 251
Query: 218 RDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRL 277
RDYGRYDL QLRFKKG CL +NFY RGDGT VYFFT+EE++T+F S GF E+QNL+DRRL
Sbjct: 252 RDYGRYDLAQLRFKKGSCLAENFYLRGDGTRVYFFTQEEIRTLFTSCGFAEEQNLVDRRL 311
Query: 278 QVNRGKQIKMYRVWIQAK 295
Q+NRGKQ+KMYRVWIQ K
Sbjct: 312 QINRGKQLKMYRVWIQGK 329
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158295100|ref|XP_316017.4| AGAP005973-PA [Anopheles gambiae str. PEST] gi|157015874|gb|EAA11389.4| AGAP005973-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 173/315 (54%), Positives = 223/315 (70%), Gaps = 22/315 (6%)
Query: 3 ETGEVRPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQTLN 62
E VRPQFGNR L +VFQHNAWD+VQWDEEQE A + V+ NS +++ + L
Sbjct: 15 EQPSVRPQFGNRFLSAGDDVFQHNAWDNVQWDEEQENAALEGVKKNSSVKLSDAEVTRLE 74
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEII----------------------EPLSS 100
+ +NWD FY +HQNRFFKDRHWLFTEF E+ E +S
Sbjct: 75 TEADQNWDRFYGIHQNRFFKDRHWLFTEFPELAPAKGPNTVPERVLPDGEPVKRAEEVSQ 134
Query: 101 TKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC 160
++ I EIGCGVGN+VFPI+++ + N+ +Y DFS A++I+ + EY +RC
Sbjct: 135 ESDGQQRSRTIFEIGCGVGNTVFPILKYSEEKNLMIYASDFSRQAIDIMCQSPEYDTNRC 194
Query: 161 HAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220
AFV D T++ W+ PFA S+DIV+LIFVL AI+P +MQHV+NQ+ +YLKPGGMV+ RDY
Sbjct: 195 KAFVLDATADRWDVPFAENSIDIVVLIFVLSAIDPERMQHVVNQIARYLKPGGMVMLRDY 254
Query: 221 GRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVN 280
GRYDL QLRFK G+CL+DNFY RGDGTLVYFFT+E+++T+F SAG VE+QN++DRRLQVN
Sbjct: 255 GRYDLAQLRFKPGKCLKDNFYVRGDGTLVYFFTQEDLRTLFTSAGLVEEQNIVDRRLQVN 314
Query: 281 RGKQIKMYRVWIQAK 295
RGK +KMYRVW+Q K
Sbjct: 315 RGKMVKMYRVWVQVK 329
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380030445|ref|XP_003698859.1| PREDICTED: methyltransferase-like protein 2-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/318 (57%), Positives = 225/318 (70%), Gaps = 25/318 (7%)
Query: 3 ETGEVRPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQTLN 62
E+ RPQFGNR L +NVFQHNAWD++ WDEEQ+ A++ V NS + + I
Sbjct: 12 ESNNKRPQFGNRTLSNINNVFQHNAWDNIIWDEEQQNLAKQKVNENSTITMTDEKILEYE 71
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTE---------IIEPL-----SSTKTDTCST 108
+ K WD FY +H+N+FFKDRHWLFTEF E I +PL + K D +
Sbjct: 72 HEAYKYWDKFYGIHENKFFKDRHWLFTEFPELAADIVKQNIKQPLRFKNENIKKNDQETH 131
Query: 109 KNIL-----------EIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP 157
+NIL EIGCGVGN+VFPI+ + + N+FVY CDFS A++ILK++ Y
Sbjct: 132 ENILDLPSKNENKILEIGCGVGNTVFPILLYNTDANLFVYCCDFSAKAIDILKQNSAYDT 191
Query: 158 DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
RC AF+ DVT E+W PF PESLDI++LIFVL AINP KM+H+I QV+KYLK GG+VLF
Sbjct: 192 SRCKAFILDVTQEEWQTPFEPESLDIIVLIFVLSAINPEKMKHIIEQVHKYLKSGGLVLF 251
Query: 218 RDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRL 277
RDYGRYDL QLRFKKG CL +NFY RGDGT VYFFT+EEV+ +F S GF+E+QNLIDRRL
Sbjct: 252 RDYGRYDLAQLRFKKGSCLANNFYVRGDGTRVYFFTQEEVRILFTSCGFIEEQNLIDRRL 311
Query: 278 QVNRGKQIKMYRVWIQAK 295
Q+NRGKQ+KMYRVWIQ K
Sbjct: 312 QINRGKQLKMYRVWIQGK 329
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383861180|ref|XP_003706064.1| PREDICTED: methyltransferase-like protein 2-A-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/313 (58%), Positives = 225/313 (71%), Gaps = 25/313 (7%)
Query: 8 RPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQTLNEDVAK 67
RPQFGNR L + NVFQHNAWD+V W+EEQ+ A++ V NS++ + + + K
Sbjct: 16 RPQFGNRTLSNNDNVFQHNAWDNVVWNEEQQTLAQQKVNENSIVTLSDEKVWEYECEANK 75
Query: 68 NWDAFYNVHQNRFFKDRHWLFTEFTEII---------EPLSS-----TKTD--------- 104
WD FY +H+N+FFKDRHWLFTEF E+ + L S +K D
Sbjct: 76 YWDKFYGIHENKFFKDRHWLFTEFPELAADTVKQDVKQSLRSVTENRSKNDEETHIKILD 135
Query: 105 --TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHA 162
+ ILEIGCGVGN+VFPI+ + ++ ++FVY CDFS A++ILK++ Y RC A
Sbjct: 136 LPSEGGHKILEIGCGVGNTVFPILLYNRDPSLFVYCCDFSTKAIDILKQNPAYDTSRCEA 195
Query: 163 FVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222
FV DVT E+W PF PESLDI++LIFVL AI P+KM+HVI QVYKYLKPGG+VLFRDYGR
Sbjct: 196 FVLDVTQENWQTPFEPESLDIIVLIFVLSAIQPDKMKHVIQQVYKYLKPGGLVLFRDYGR 255
Query: 223 YDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRG 282
YDL QLRFKKG CL +NFYARGDGT VYFFT++EVKT+F S GF E+QNL+DRRLQVNRG
Sbjct: 256 YDLAQLRFKKGSCLSENFYARGDGTRVYFFTQDEVKTLFTSCGFSEEQNLVDRRLQVNRG 315
Query: 283 KQIKMYRVWIQAK 295
KQ+KMYRVWIQ K
Sbjct: 316 KQLKMYRVWIQGK 328
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66564357|ref|XP_624474.1| PREDICTED: methyltransferase-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/318 (56%), Positives = 225/318 (70%), Gaps = 25/318 (7%)
Query: 3 ETGEVRPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQTLN 62
E+ RPQFGNR+L ++NVFQHNAWD++ WDEEQ+ A++ V NS + + I
Sbjct: 12 ESNNKRPQFGNRILSNNNNVFQHNAWDNIIWDEEQQNLAKQKVNENSTITMSDEKIWEYE 71
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTE---------IIEPLSSTKTDT-------- 105
+ K WD FY +H+N+FFKDRHWLFTEF E I +PL +
Sbjct: 72 HEAYKYWDKFYGIHENKFFKDRHWLFTEFPELAVDIVKQNIKQPLRFKNENIKKNGQETH 131
Query: 106 -----CSTKN---ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP 157
+KN ILEIGCGVGN+VFPI+ + + N+FVY CDFS A++ILK++ Y
Sbjct: 132 ENILDLPSKNGNKILEIGCGVGNTVFPILLYNTDANLFVYCCDFSAKALDILKQNSAYDT 191
Query: 158 DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
RC AF+ DVT E+W PF PESLDI++LIFVL AINP KM+H+I Q++KYLK GG+VLF
Sbjct: 192 SRCKAFILDVTQEEWETPFEPESLDIIVLIFVLSAINPEKMKHIIEQIHKYLKSGGLVLF 251
Query: 218 RDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRL 277
RDYGRYDL QLRFKKG CL +NFY RGDGT VYFFT+EE++ +F S GF+E+QNLIDRRL
Sbjct: 252 RDYGRYDLAQLRFKKGSCLANNFYVRGDGTRVYFFTQEEIRILFTSCGFIEEQNLIDRRL 311
Query: 278 QVNRGKQIKMYRVWIQAK 295
Q+NRGKQ+KMYRVWIQ K
Sbjct: 312 QINRGKQLKMYRVWIQGK 329
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357612545|gb|EHJ68053.1| hypothetical protein KGM_06266 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/318 (54%), Positives = 223/318 (70%), Gaps = 25/318 (7%)
Query: 3 ETGEVRPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQTLN 62
E + RPQFGNR+L+ VF+HNAWD+VQWD EQE+ A K V+ NSV+++ I+ L
Sbjct: 2 ENTDKRPQFGNRLLENVDEVFKHNAWDNVQWDVEQEEAAAKKVQQNSVIKLSDENIKDLG 61
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEII-------------------------EP 97
E+ K+WDAFY++HQNRFFKDRHWLFTEF E+ E
Sbjct: 62 ENANKHWDAFYDIHQNRFFKDRHWLFTEFPELAPDNTSAPVRVFPKTEISNQSHENRNET 121
Query: 98 LSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP 157
S D + + I EIGCGVGN++FPI+++ ++ N+F+YGCDFS A++I+++ + Y
Sbjct: 122 NQSNNVDNQNKRYIFEIGCGVGNTIFPILQYSRDPNLFIYGCDFSSKAIDIMRQSDLYDK 181
Query: 158 DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
RC FV D T +W PF SLDI++LIFVL AI P KM+ VI +YKYLKPGG+V+F
Sbjct: 182 KRCEVFVLDATVPEWQVPFKENSLDIIVLIFVLSAIEPAKMKTVIGNIYKYLKPGGLVVF 241
Query: 218 RDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRL 277
RDYG+YDL QLRFK GRC+ +NFYARGD T+VYFFT+EE+ +F AGF E+QNLIDRRL
Sbjct: 242 RDYGKYDLAQLRFKTGRCISENFYARGDNTMVYFFTQEEISNLFRGAGFTEEQNLIDRRL 301
Query: 278 QVNRGKQIKMYRVWIQAK 295
QVNRGK + MYR+WIQAK
Sbjct: 302 QVNRGKMLTMYRIWIQAK 319
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170045964|ref|XP_001850559.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167868792|gb|EDS32175.1| conserved hypothetical protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/312 (54%), Positives = 227/312 (72%), Gaps = 18/312 (5%)
Query: 2 EETGEV--RPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQ 59
EE+ V RPQFGNR L E+ +VFQHNAWD+V+WDE QE+ A + V+ NS +++ +
Sbjct: 6 EESAAVGKRPQFGNRFLSEEDDVFQHNAWDNVEWDEAQERTALESVQKNSTVKMTVEAAE 65
Query: 60 TLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEI-----------IEPLSSTKTDTC-- 106
L + NWD FY VHQNRFFKDRHWLFTEF E+ + P+ + + C
Sbjct: 66 RLEREADANWDKFYGVHQNRFFKDRHWLFTEFPELAPRNSRDAPERVYPVGTAGREVCVP 125
Query: 107 ---STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAF 163
+ I EIG GVGN+VFPI+++ +++ +Y DFS A+ ILKE +E+ RC AF
Sbjct: 126 GDDGPRTIFEIGSGVGNTVFPILKYSVEEDLKIYASDFSRQAIQILKESKEFDGKRCEAF 185
Query: 164 VCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223
V D T++ W+ PF S+DIV+LIFVL AI+P++MQHV NQ+YKYLKPGG++L RDYGRY
Sbjct: 186 VLDATADRWDVPFEENSVDIVVLIFVLSAIDPDRMQHVANQIYKYLKPGGLLLLRDYGRY 245
Query: 224 DLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGK 283
DL QLRFK GRCL++NFY+RGDGT VYFFT+E+++ +FE+AG VE+QN++DRRLQVNRG+
Sbjct: 246 DLAQLRFKSGRCLKENFYSRGDGTFVYFFTQEDLRKLFETAGLVEEQNIVDRRLQVNRGR 305
Query: 284 QIKMYRVWIQAK 295
+KMYRVW+Q K
Sbjct: 306 MLKMYRVWVQVK 317
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157115133|ref|XP_001658128.1| hypothetical protein AaeL_AAEL007084 [Aedes aegypti] gi|108877032|gb|EAT41257.1| AAEL007084-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/310 (55%), Positives = 229/310 (73%), Gaps = 23/310 (7%)
Query: 8 RPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQTLNEDVAK 67
RPQFGNR L ++ +VFQHNAWD+V+WDEEQEQ A + V+ NS ++++ + L +
Sbjct: 25 RPQFGNRFLSDEDDVFQHNAWDNVEWDEEQEQAALEGVKKNSTVKMNVQDAEKLELEADS 84
Query: 68 NWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSS-----------TKTDTCST-------- 108
NWD FY +HQNRFFKDRHWLFTEF E+ P ++ T++ CS+
Sbjct: 85 NWDKFYGIHQNRFFKDRHWLFTEFPELA-PRNTKDAPERVFPEGTESSGCSSASQFTVDP 143
Query: 109 ---KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC 165
+ I E+GCGVGN+VFPI+++ +N+ +Y DFS+ A+ ILKE +E+ RC AFV
Sbjct: 144 NRQRTIFEVGCGVGNTVFPILKYSIEENLKIYASDFSKQAIQILKESKEFDEKRCEAFVL 203
Query: 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225
D T+E W+ PF S+DI++LIFVL AI+P +MQH+ NQ+ +YLKPGG +L RDYGRYDL
Sbjct: 204 DATAETWDVPFEENSIDIIVLIFVLSAIDPERMQHIANQIGRYLKPGGQLLLRDYGRYDL 263
Query: 226 VQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQI 285
QLRFK G+CL++NFYARGDGTLVYFFT+EE++T+F++AG VE+QN++DRRLQVNRGK +
Sbjct: 264 AQLRFKPGKCLKENFYARGDGTLVYFFTQEELRTLFQNAGLVEEQNIVDRRLQVNRGKML 323
Query: 286 KMYRVWIQAK 295
KMYRVW+Q K
Sbjct: 324 KMYRVWVQVK 333
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242011772|ref|XP_002426620.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510773|gb|EEB13882.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 170/293 (58%), Positives = 224/293 (76%), Gaps = 4/293 (1%)
Query: 3 ETGEVRPQFGNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQTLN 62
+ ++RPQFG R L +++VF+HNAWD+VQWDEEQE+ A + VE NS + ++ + L
Sbjct: 6 DDNKLRPQFGTRFLTNENDVFKHNAWDNVQWDEEQEKLALEKVEANSQKKFSEDEKELLE 65
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
+ K+WD+FY +HQNRFFKDRHWLFTEF E+ + + DT I EIGCGVGN++
Sbjct: 66 RNADKHWDSFYCIHQNRFFKDRHWLFTEFPELDVDNNLQEGDTIK---IFEIGCGVGNTI 122
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
FPI+++ N+++YGCDFS+ A+N+ KEH Y +RC F CDVT ++WN PF S+D
Sbjct: 123 FPILQNTSKKNIYLYGCDFSKTAINVFKEHSLYDENRCFGFECDVTLDEWNTPFEINSID 182
Query: 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242
IV+LIFVL AI+P K +HV+ ++ YLKPGG +LFRDYGRYD+ QLRFK GRC+ DNFYA
Sbjct: 183 IVILIFVLSAISPKKFEHVVKKIKTYLKPGGKILFRDYGRYDMAQLRFKSGRCIDDNFYA 242
Query: 243 RGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAK 295
RGDGT+VYFFT +E+K++FE GF+E+QNL+DRRLQVNR K +KMYRVWIQAK
Sbjct: 243 RGDGTMVYFFT-QEIKSLFEKEGFIEEQNLVDRRLQVNRDKMLKMYRVWIQAK 294
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 352 | ||||||
| MGI|MGI:1289171 | 389 | Mettl2 "methyltransferase like | 0.536 | 0.485 | 0.603 | 4.4e-86 | |
| ZFIN|ZDB-GENE-050417-462 | 353 | mettl2a "methyltransferase lik | 0.525 | 0.524 | 0.605 | 7.2e-86 | |
| RGD|1310240 | 385 | Mettl2b "methyltransferase lik | 0.536 | 0.490 | 0.592 | 2.4e-85 | |
| FB|FBgn0035247 | 325 | metl "methyltransferase-like" | 0.801 | 0.867 | 0.524 | 4.9e-85 | |
| UNIPROTKB|Q6P1Q9 | 378 | METTL2B "Methyltransferase-lik | 0.536 | 0.5 | 0.603 | 3.5e-84 | |
| UNIPROTKB|Q96IZ6 | 378 | METTL2A "Methyltransferase-lik | 0.536 | 0.5 | 0.603 | 4.5e-84 | |
| UNIPROTKB|Q0P5B2 | 378 | METTL2 "Methyltransferase-like | 0.536 | 0.5 | 0.592 | 5.7e-84 | |
| ZFIN|ZDB-GENE-041114-19 | 342 | mettl8 "methyltransferase like | 0.525 | 0.540 | 0.589 | 4e-81 | |
| UNIPROTKB|F1S1U3 | 411 | METTL8 "Uncharacterized protei | 0.565 | 0.484 | 0.554 | 1.1e-80 | |
| UNIPROTKB|F1N1F4 | 407 | METTL8 "Uncharacterized protei | 0.553 | 0.479 | 0.565 | 1.5e-77 |
| MGI|MGI:1289171 Mettl2 "methyltransferase like 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
Identities = 114/189 (60%), Positives = 147/189 (77%)
Query: 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCD 166
+T ILE+GCGVGN+VFPI++ N N+FVY CDFS A+ +LK + +Y P RC+AFV D
Sbjct: 173 ATYRILEVGCGVGNTVFPILQTNNNPNLFVYCCDFSATAIELLKTNSQYDPSRCYAFVHD 232
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV 226
+ ED + P +SLD+++LIFVL AI P+KMQ I+++ + LKPGG++L RDYGRYD+
Sbjct: 233 LCDEDQSYPVPEDSLDVIVLIFVLSAIVPDKMQKAISKLSRLLKPGGVMLLRDYGRYDMA 292
Query: 227 QLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIK 286
QLRFKKG+CL NFY RGDGT VYFFT+ E+ T+F +AG + QNL+DRRLQVNRGKQ+
Sbjct: 293 QLRFKKGQCLSGNFYVRGDGTRVYFFTQGELDTLFTAAGLEKVQNLVDRRLQVNRGKQLT 352
Query: 287 MYRVWIQAK 295
MYRVWIQ K
Sbjct: 353 MYRVWIQCK 361
|
|
| ZFIN|ZDB-GENE-050417-462 mettl2a "methyltransferase like 2A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 625 (225.1 bits), Expect = 7.2e-86, Sum P(2) = 7.2e-86
Identities = 112/185 (60%), Positives = 144/185 (77%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
ILE+GCGVGN+VFPI++ + +FVY CDFS AV+++K + EY P RCHAFV D++ E
Sbjct: 161 ILEVGCGVGNTVFPILKTNNDPGLFVYCCDFSSTAVDLVKSNPEYDPSRCHAFVHDMSDE 220
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF 230
P SLD+++LIFVL A++P KMQ IN++ + LKPGG++L RDYGRYD+ QLRF
Sbjct: 221 SGEYPMPDHSLDVIVLIFVLSALHPEKMQKSINRLGRLLKPGGVLLLRDYGRYDMAQLRF 280
Query: 231 KKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRV 290
KKGRCL +NFY RGDGT VYFFT++E+ +F SAG + QNL+DRRLQVNRGKQ+ MYRV
Sbjct: 281 KKGRCLSENFYVRGDGTRVYFFTQDELHDLFSSAGLEKLQNLVDRRLQVNRGKQLTMYRV 340
Query: 291 WIQAK 295
W+Q K
Sbjct: 341 WVQCK 345
|
|
| RGD|1310240 Mettl2b "methyltransferase like 2B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
Identities = 112/189 (59%), Positives = 147/189 (77%)
Query: 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCD 166
+T ILE+GCGVGN+VFPI++ N ++FVY CDFS A+ ++K + EY P RC AFV D
Sbjct: 178 ATYRILEVGCGVGNTVFPILQTNNNPDLFVYCCDFSATAIELVKTNSEYDPSRCFAFVHD 237
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV 226
+ ED + P +SLD+++LIFVL AI P+KMQ I+++ + LKPGG++L RDYGRYD+
Sbjct: 238 LCDEDQSYPMPKDSLDVIVLIFVLSAIVPDKMQKAISKLSRLLKPGGVMLLRDYGRYDMA 297
Query: 227 QLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIK 286
QLRFKKG+CL NFY RGDGT VYFFT++E+ T+F +AG + QN++DRRLQVNRGKQ+
Sbjct: 298 QLRFKKGQCLSGNFYVRGDGTRVYFFTQDELDTLFTAAGLEKVQNVVDRRLQVNRGKQLT 357
Query: 287 MYRVWIQAK 295
MYRVWIQ K
Sbjct: 358 MYRVWIQCK 366
|
|
| FB|FBgn0035247 metl "methyltransferase-like" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 149/284 (52%), Positives = 198/284 (69%)
Query: 12 GNRVLQEDSNVFQHNAWDHVQWDEEQEQQARKLVENNSVLQIDKNLIQTLNEDVAKNWDA 71
G+RVL + VF+ NAWDHVQWDEEQE A+ V NS +++ + D K WD+
Sbjct: 39 GSRVLTDAREVFEFNAWDHVQWDEEQELAAKAAVAKNSTSKMEAEQKERFQTDAPKFWDS 98
Query: 72 FYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKN 131
FY +H NRFFKDRHWLFTEF E+ PL++ ++I E+GCGVGN++ P++++
Sbjct: 99 FYGIHDNRFFKDRHWLFTEFPELA-PLAADSA-VLQPRSIFELGCGVGNTILPLLQYSSE 156
Query: 132 DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLD 191
+ V+GCDFS A+ IL+ ++ RC FV D T + W PF S DI+++IFVL
Sbjct: 157 PQLKVFGCDFSARAIEILRSQRQFDEKRCEVFVMDATLDHWQVPFEENSQDIIVMIFVLS 216
Query: 192 AINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYF 251
AI P KMQ V++ Y+YL+PGG++LFRDYGRYDL QLRFK G+C++DNFY RGDGT+VYF
Sbjct: 217 AIEPKKMQRVLDNCYRYLRPGGLLLFRDYGRYDLAQLRFKSGKCMEDNFYVRGDGTMVYF 276
Query: 252 FTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAK 295
FT EE++ M AG E+Q ++DRRLQVNR + +KMYRVWIQ K
Sbjct: 277 FTEEELRGMMTQAGLQEEQLIVDRRLQVNRCRGLKMYRVWIQTK 320
|
|
| UNIPROTKB|Q6P1Q9 METTL2B "Methyltransferase-like protein 2B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
Identities = 114/189 (60%), Positives = 145/189 (76%)
Query: 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCD 166
+T ILE+GCGVGN+VFPI++ + +FVY CDFS A+ +++ + EY P RC AFV D
Sbjct: 180 ATYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHD 239
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV 226
+ E+ + P SLDI++LIFVL A+ P+KMQ IN++ + LKPGGMVL RDYGRYD+
Sbjct: 240 LCDEEKSYPVPKGSLDIIILIFVLSAVVPDKMQKAINRLSRLLKPGGMVLLRDYGRYDMA 299
Query: 227 QLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIK 286
QLRFKKG+CL NFY RGDGT VYFFT+EE+ T+F +AG + QNL+DRRLQVNRGKQ+
Sbjct: 300 QLRFKKGQCLSGNFYVRGDGTRVYFFTQEELDTLFTTAGLEKVQNLVDRRLQVNRGKQLT 359
Query: 287 MYRVWIQAK 295
MYRVWIQ K
Sbjct: 360 MYRVWIQCK 368
|
|
| UNIPROTKB|Q96IZ6 METTL2A "Methyltransferase-like protein 2A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
Identities = 114/189 (60%), Positives = 145/189 (76%)
Query: 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCD 166
+T ILE+GCGVGN+VFPI++ + +FVY CDFS A+ +++ + EY P RC AFV D
Sbjct: 180 ATYRILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHD 239
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV 226
+ E+ + P SLDI++LIFVL AI P+KMQ IN++ + LKPGGM+L RDYGRYD+
Sbjct: 240 LCDEEKSYPVPKGSLDIIILIFVLSAIVPDKMQKAINRLSRLLKPGGMMLLRDYGRYDMA 299
Query: 227 QLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIK 286
QLRFKKG+CL NFY RGDGT VYFFT+EE+ T+F +AG + QNL+DRRLQVNRGKQ+
Sbjct: 300 QLRFKKGQCLSGNFYVRGDGTRVYFFTQEELDTLFTTAGLEKVQNLVDRRLQVNRGKQLT 359
Query: 287 MYRVWIQAK 295
MYRVWIQ K
Sbjct: 360 MYRVWIQCK 368
|
|
| UNIPROTKB|Q0P5B2 METTL2 "Methyltransferase-like protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 5.7e-84, Sum P(2) = 5.7e-84
Identities = 112/189 (59%), Positives = 147/189 (77%)
Query: 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCD 166
+T ILE+GCGVGN+VFPI++ + ++FVY CDFS AV +++ + Y P RC AFV D
Sbjct: 180 ATYRILEVGCGVGNTVFPILQTNNDPSLFVYCCDFSSTAVELVQTNSAYDPSRCFAFVHD 239
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV 226
+ ED + P SLD+++LIFVL AI P+KMQ+ IN++ + LKPGG++L RDYGRYD+
Sbjct: 240 LCDEDKSYPMPENSLDVIILIFVLSAIVPDKMQNAINRLSRLLKPGGIMLLRDYGRYDMA 299
Query: 227 QLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIK 286
QLRFKKG+CL +NFY RGDGT VYFFT++E+ T+F +AG + QNL+DRRLQVNRGKQ+
Sbjct: 300 QLRFKKGQCLSENFYVRGDGTRVYFFTQDELDTLFTTAGLEKVQNLVDRRLQVNRGKQLT 359
Query: 287 MYRVWIQAK 295
MYRVWIQ K
Sbjct: 360 MYRVWIQCK 368
|
|
| ZFIN|ZDB-GENE-041114-19 mettl8 "methyltransferase like 8" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
Identities = 109/185 (58%), Positives = 138/185 (74%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
ILE+GCG GNSVFPI+ + F+Y CDFS A+ ++++H +Y P CHAFV D+
Sbjct: 152 ILEVGCGAGNSVFPIINTIRGSKAFLYCCDFSSRAIELIQKHPDYDPAVCHAFVRDICDA 211
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF 230
PF PESLDI+L++FVL AI+P + Q V+ + LK GGMVLFRDYGRYDL QLRF
Sbjct: 212 TSPFPFPPESLDIILVVFVLSAIHPARAQAVVRGLAGLLKQGGMVLFRDYGRYDLSQLRF 271
Query: 231 KKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRV 290
KKG+CL +NFY+R DGT VYFFT++EV +F +AG E QNL DRRLQVNRGK+I M+RV
Sbjct: 272 KKGQCLSENFYSRQDGTCVYFFTKDEVHDLFSAAGLEELQNLEDRRLQVNRGKKILMHRV 331
Query: 291 WIQAK 295
W+Q+K
Sbjct: 332 WMQSK 336
|
|
| UNIPROTKB|F1S1U3 METTL8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 587 (211.7 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
Identities = 112/202 (55%), Positives = 145/202 (71%)
Query: 107 STKNILEIGCGVGNSVFPIVEHCKND-NVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC 165
+T ILE+GCG GNSVFPI+ +N F+Y CDF+ AV ++K H Y+ +C AFV
Sbjct: 200 ATFRILEVGCGAGNSVFPILNTLQNTPESFLYCCDFASGAVELVKSHPSYRAAQCCAFVH 259
Query: 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225
DV + PF LD++LL+FVL +I+P++MQ V+ Q+ K LKPGGM+LFRDYGRYD
Sbjct: 260 DVCDDGLAYPFPDGILDVILLVFVLSSIHPDRMQGVVKQLSKLLKPGGMLLFRDYGRYDK 319
Query: 226 VQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQI 285
QLRFK+G CL +NFY RGDGT YFFT+ EV MF AG EKQNL+DRRLQVNR K++
Sbjct: 320 TQLRFKRGHCLSENFYVRGDGTRAYFFTKGEVHDMFCKAGLDEKQNLVDRRLQVNRKKKV 379
Query: 286 KMYRVWIQAKSYFVHYLFVTEE 307
KM+RVW+Q K F L++T++
Sbjct: 380 KMHRVWVQGK--FQKPLYLTQK 399
|
|
| UNIPROTKB|F1N1F4 METTL8 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 112/198 (56%), Positives = 143/198 (72%)
Query: 111 ILEIGCGVGNSVFPIVEHCKN-DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169
ILE+GCG GNSVFPI+ +N F+Y CDF+ AV ++K H Y+ +C AFV DV
Sbjct: 200 ILEVGCGAGNSVFPILNTLQNVPEFFLYCCDFASGAVELVKSHASYRAAQCCAFVHDVCD 259
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
PF +LD++LL+FVL +I+P++MQ VIN++ K LKPGGM+LFRDYGRYD QLR
Sbjct: 260 HGLPYPFPDGTLDVILLVFVLSSIHPDRMQGVINRLSKLLKPGGMLLFRDYGRYDKTQLR 319
Query: 230 FKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYR 289
FK+G CL +NFY RGDGT YFFT+ EV MF AG EKQNL+DRRLQVNR K++KM+R
Sbjct: 320 FKRGHCLSENFYVRGDGTRAYFFTKGEVHNMFCKAGLDEKQNLVDRRLQVNRKKKVKMHR 379
Query: 290 VWIQAKSYFVHYLFVTEE 307
VW+Q K F L +T++
Sbjct: 380 VWVQGK--FQKPLHLTQK 395
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5ZHP8 | METL2_CHICK | 2, ., 1, ., 1, ., - | 0.4522 | 0.8323 | 0.7918 | yes | N/A |
| Q9P7L6 | METL_SCHPO | 2, ., 1, ., 1, ., - | 0.4237 | 0.8125 | 0.9315 | yes | N/A |
| Q86BS6 | METL_DROME | 2, ., 1, ., 1, ., - | 0.5246 | 0.8011 | 0.8676 | yes | N/A |
| A8KBL7 | MEL2A_DANRE | 2, ., 1, ., 1, ., - | 0.5015 | 0.8125 | 0.8101 | yes | N/A |
| Q8BMK1 | METL2_MOUSE | 2, ., 1, ., 1, ., - | 0.4739 | 0.8153 | 0.7377 | yes | N/A |
| Q5M8E6 | METL2_XENTR | 2, ., 1, ., 1, ., - | 0.5331 | 0.8153 | 0.8516 | yes | N/A |
| Q0P5B2 | METL2_BOVIN | 2, ., 1, ., 1, ., - | 0.5863 | 0.5426 | 0.5052 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 352 | |||
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-17 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 5e-15 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-14 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 8e-13 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 3e-10 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 2e-08 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-08 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 1e-07 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 2e-07 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 3e-07 | |
| pfam13578 | 105 | pfam13578, Methyltransf_24, Methyltransferase doma | 5e-05 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 5e-05 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 1e-04 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 3e-04 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 0.001 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 0.002 | |
| COG3315 | 297 | COG3315, COG3315, O-Methyltransferase involved in | 0.002 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 0.002 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-17
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 112 LEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH----EEYKPDRCHAFVCDV 167
L+IGCG G + ++E + G D S A+ E R V D
Sbjct: 1 LDIGCGTGTLLRALLEA--LPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDA 58
Query: 168 TSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215
D P S D+V+ VL + + V+ + + LKPGG++
Sbjct: 59 IDLD------PGSFDVVVASNVLHHLAD--PRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-15
Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 12/160 (7%)
Query: 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVC 165
S +L++GCG G F + E V G D SE A+ KE+ ++ +
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEK-LGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQG 61
Query: 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225
D+ S D+V+ VL+ + V+ ++ + LKPGG+++ D
Sbjct: 62 DIEELPQL-QLEDNSFDVVISNEVLNHL--PDPDKVLEEIIRVLKPGGVLIVSDPV---- 114
Query: 226 VQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265
+ + YA G L ++++ T+ AG
Sbjct: 115 LLSELPALLEDLERLYA---GVLEGAIGKKKLLTILREAG 151
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-14
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKE-HEEYKPDRCHAFVCDVT 168
+L++GCG G + V G D S A+ + ++ D D
Sbjct: 1 RVLDLGCGTGALALALASGPG---ARVTGVDISPVALELARKAAAALLADNVEVLKGDAE 57
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
PP A ES D+++ L + + + + + + LKPGG+++
Sbjct: 58 E---LPPEADESFDVIISDPPLHHLVED-LARFLEEARRLLKPGGVLVL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 8e-13
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 112 LEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSED 171
L++GCG G + V G D S + + ++ V D
Sbjct: 1 LDVGCGTGLLAEALARRGGAR---VTGVDLSPEMLALARKRA-----PRKFVVGDAE--- 49
Query: 172 WNPPFAPESLDIVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLF 217
+ PF ES D+V+ VL + +P + + ++ + LKPGG ++
Sbjct: 50 -DLPFPDESFDVVVSSLVLHHLPDPER---ALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-10
Identities = 39/184 (21%), Positives = 65/184 (35%), Gaps = 35/184 (19%)
Query: 84 RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE 143
R ++ L +L+IGCG G ++ + V G D S
Sbjct: 2 RRQRERFLARLLARLLPRLKPG---GRVLDIGCGTG----ILLRLLRERGFDVTGVDPSP 54
Query: 144 NAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAI-NPNKMQHVI 202
AV I + P D++ VL+ + +P ++
Sbjct: 55 AAVLIFSLFDAPDPA-----------------VLAGKYDLITAFEVLEHLPDP---PALL 94
Query: 203 NQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262
Q+ + LKPGG++L D +L + Y R T + F++ E +K + E
Sbjct: 95 QQLRELLKPGGVLLISTPLADDDARL-------FANWHYLRPRNTHISFYSEESLKRLLE 147
Query: 263 SAGF 266
AGF
Sbjct: 148 KAGF 151
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (128), Expect = 2e-08
Identities = 40/239 (16%), Positives = 74/239 (30%), Gaps = 5/239 (2%)
Query: 71 AFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCK 130
+ D L E + + +L+IGCG G +
Sbjct: 12 ILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLAL--LARLG 69
Query: 131 NDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL 190
+V G D S + + + E FV P S D+V+ + VL
Sbjct: 70 GRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129
Query: 191 DAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVY 250
+ P K + ++ + LKPGG ++ D R L++ R D RGD L
Sbjct: 130 HLLPPAK---ALRELLRVLKPGGRLVLSDLLRDGLLEGRLAALLGFGDPVLERGDILLEL 186
Query: 251 FFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVHYLFVTEEVK 309
E + + ++R +++++ + + +
Sbjct: 187 EALLRLELLDLEELLGLLGELELERGGLARLLEELRLLLELLALGLEARGFRLLLLLKG 245
|
Length = 257 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 14/107 (13%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKND-NVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCD 166
+L+IGCG G+ +E + V G D S + + +E+ + R FV
Sbjct: 3 ARVLDIGCGTGSL---AIELARLFPGARVTGVDLSPEMLELARENAKLALGPRIT-FVQG 58
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGG 213
+ + D V + + +++ + LKPGG
Sbjct: 59 DAPDALDLLEGF---DAVFIGGGGGD-----LLELLDALASLLKPGG 97
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-07
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
IL++GCG G + + V G D S+ A+ + KE K + V D
Sbjct: 1 ILDLGCGTGRVLRALAR---AGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADA--R 55
Query: 171 DWNPPFAPESLDIVLLIF-VLDAINPNKMQHVINQVYKYLKPGG 213
D PF S D+V+ LD ++P +++ ++ + + L+PGG
Sbjct: 56 DL--PFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-07
Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 23/120 (19%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVT 168
+L+ G G G + + V G + A + + R V D
Sbjct: 4 VLDPGAGSGAFLLAAARAGPDAR--VVGVELDPEAAALARRRLALAGLAPRVRVVVGDAR 61
Query: 169 SEDW-----------NPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
NPP+ P + D N + + + LKPGG+++
Sbjct: 62 ELLELPDGSFDLVLGNPPYGPRAGD--------PKDNRDLYDRFLAAALRLLKPGGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKE-HEEYKPDRCHAFVCDVT 168
+L++ CG G+ + + V G D SE+ + + +E ++ V D
Sbjct: 54 KVLDVACGTGDMALLLAKSVGTGE--VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAE 111
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
N PF S D V + F L + + + + ++Y+ LKPGG +L ++ + D L
Sbjct: 112 ----NLPFPDNSFDAVTISFGLRNV-TDIDK-ALKEMYRVLKPGGRLLVLEFSKPDNPVL 165
Query: 229 R 229
R
Sbjct: 166 R 166
|
Length = 238 |
| >gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-05
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 14/114 (12%)
Query: 112 LEIGCGVGNSVFPIVEHCKNDNVF-VYGCD---FSENAVNILKEHEEYKPDRCHAFVCDV 167
+EIG G S + + K++ + +Y D +E N+ K DR D
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAGANLRKAG---LADRVRLLRGD- 56
Query: 168 TSEDWNPPFAPESLDIVLLIFVLDA-INPNKMQHVINQVYKYLKPGGMVLFRDY 220
S + S+D L+F+ D + + L PGG+++F D
Sbjct: 57 -SLEALARLPDGSID---LLFI-DGDHTYEAVLADLELWLPLLAPGGIIVFHDI 105
|
This family appears to be a methyltransferase domain. Length = 105 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCH---AFVC 165
K++LE+G G+G + + V DF E+ + K++E + + F+C
Sbjct: 39 KSVLELGAGIGRFTGELAKKAGQ----VIALDFIESVI---KKNESI--NGHYKNVKFMC 89
Query: 166 -DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219
DVTS D N + S+D++ ++L ++ +++++ ++ K+LK GG + FR+
Sbjct: 90 ADVTSPDLN--ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142
|
Length = 475 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
+L++GCG GN + + V G D SE + + KE FV
Sbjct: 23 VLDVGCGPGNDARELARRVGPEGR-VVGIDRSEAMLALAKERAAGLGPNV-EFVRGDAD- 79
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
PF S D V VL + + + ++ + L+PGG V+
Sbjct: 80 --GLPFPDGSFDAVRSDRVLQHL-EDP-ARALAEIARVLRPGGRVV 121
|
Length = 241 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 21/178 (11%)
Query: 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169
L++ G G+ F + + + V G D +EN +LKE E+ + + +
Sbjct: 50 KFLDVAGGTGDWTFGLSDSAGSSGKVV-GLDINEN---MLKEGEKKAKEEGKYNIEFLQG 105
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
PF +S DIV + F L N V+ + ++ LKPGG V+ ++ + + L
Sbjct: 106 NAEELPFEDDSFDIVTISFGLR--NFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLS 163
Query: 230 F-----------KKGRCLQDNF--YARGDGTLVYFFTREEVKTMFESAGF--VEKQNL 272
G+ ++ Y ++ F ++ + +MFE AGF V ++L
Sbjct: 164 QAYELYFKYVMPFMGKMFAKSYKSYQYLQESIRDFPDQKTLASMFEKAGFKSVGYESL 221
|
Length = 233 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+ +L++GCG+G F + E N +V V G D S N ++ E + V D T
Sbjct: 268 QKVLDVGCGIGGGDFYMAE---NFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCT 324
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGR 222
+ + S D+ I+ D I + + +K+LKPGG VL DY R
Sbjct: 325 KKT----YPDNSFDV---IYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372
|
Length = 475 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 23/118 (19%)
Query: 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVT 168
+L++GCG G V ++ ++ V D + A+ + + + F D+
Sbjct: 34 KVLDLGCGYG--VLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLY 91
Query: 169 SE------D---WNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
S D NPPF A + + Q I ++LKPGG +
Sbjct: 92 SAVEPGKFDLIISNPPFH-AGK----------ATDYDVAQRFIAGAARHLKPGGELWI 138
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|225852 COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 147 NILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD-------IV--LLIFVLDAINPNK 197
+L E P D+ +DW A D I LL++ +
Sbjct: 132 KLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMY----LPEEA 187
Query: 198 MQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK-GRCLQDNFYARGDGTLVYF-FTRE 255
+ +++++ PG V F DY ++ R ++ G LVYF
Sbjct: 188 VDRLLSRIAALSAPGSRVAF-DYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPA 246
Query: 256 EVKTMFESAGFVEKQNLIDRRLQVNRGKQIK 286
E++T G+ N L G+
Sbjct: 247 EIETWLAERGWRSTLNRTTEDLAARYGRPTP 277
|
Length = 297 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 35/181 (19%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+ L++ CG + + E + V G DFSE N+L + D V V
Sbjct: 47 TSALDVCCGTADWSIALAEAVGPEG-HVIGLDFSE---NMLSVGRQKVKDAGLHNVELVH 102
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV------------- 215
PF S D V + F L + P+ MQ V+ ++Y+ +KPGG V
Sbjct: 103 GNAMELPFDDNSFDYVTIGFGLRNV-PDYMQ-VLREMYRVVKPGGKVVCLETSQPTIPGF 160
Query: 216 --LFRDYGRY------DLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267
L+ Y +Y L +K+ LQ++ F +E+ MF+ AGF
Sbjct: 161 KQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRD--------FPGMDELAEMFQEAGFK 212
Query: 268 E 268
+
Sbjct: 213 D 213
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| KOG2361|consensus | 264 | 100.0 | ||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.92 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.92 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.91 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.91 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.89 | |
| KOG1270|consensus | 282 | 99.88 | ||
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.85 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.84 | |
| KOG1540|consensus | 296 | 99.84 | ||
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.83 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.83 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.82 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.81 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.8 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.79 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.79 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.79 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.79 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.79 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.79 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.78 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.78 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.77 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.77 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.77 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.76 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.76 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.76 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.76 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.75 | |
| KOG4300|consensus | 252 | 99.75 | ||
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.75 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.75 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.75 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.75 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.74 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.74 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.73 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.73 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.73 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.73 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.73 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.73 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.73 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.72 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.72 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.72 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.72 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.71 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.7 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.7 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.69 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.68 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.68 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.68 | |
| KOG1271|consensus | 227 | 99.68 | ||
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.67 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.67 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.65 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.65 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.65 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.65 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.64 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.63 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.63 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.62 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.61 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.61 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.61 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.61 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.59 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.57 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.56 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.56 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.55 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.55 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.54 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.54 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.54 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.54 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.53 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.53 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.52 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.52 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.52 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.52 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.51 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.5 | |
| KOG1541|consensus | 270 | 99.49 | ||
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.48 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.48 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.48 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.48 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.47 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.47 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.47 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.45 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.44 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.44 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.44 | |
| KOG1975|consensus | 389 | 99.42 | ||
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.42 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.42 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.42 | |
| KOG3010|consensus | 261 | 99.41 | ||
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.41 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.41 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.39 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.39 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.39 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.38 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.38 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.35 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.33 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.32 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.32 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.31 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.31 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.3 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.3 | |
| KOG2899|consensus | 288 | 99.3 | ||
| PRK00811 | 283 | spermidine synthase; Provisional | 99.28 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.28 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.27 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.27 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.27 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.26 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.26 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.26 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.25 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.25 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.25 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.24 | |
| KOG2940|consensus | 325 | 99.24 | ||
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.23 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.23 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.23 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.22 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.21 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.2 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.2 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.18 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.18 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.18 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.16 | |
| KOG2904|consensus | 328 | 99.16 | ||
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 99.15 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 99.14 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.14 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.12 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.11 | |
| PLN02366 | 308 | spermidine synthase | 99.1 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.09 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.08 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.08 | |
| PLN02476 | 278 | O-methyltransferase | 99.07 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.05 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.04 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.04 | |
| KOG3045|consensus | 325 | 99.02 | ||
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.02 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.99 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.97 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.96 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.96 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.95 | |
| KOG3191|consensus | 209 | 98.95 | ||
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.92 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.92 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.88 | |
| KOG3178|consensus | 342 | 98.88 | ||
| KOG1331|consensus | 293 | 98.87 | ||
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.87 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.87 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.86 | |
| KOG1499|consensus | 346 | 98.86 | ||
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.83 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.82 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.8 | |
| PLN02823 | 336 | spermine synthase | 98.79 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.77 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.74 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.73 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.73 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.72 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.72 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.72 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.71 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.66 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.66 | |
| KOG1500|consensus | 517 | 98.66 | ||
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.65 | |
| KOG3420|consensus | 185 | 98.62 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.61 | |
| KOG1661|consensus | 237 | 98.58 | ||
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.57 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.56 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.54 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.54 | |
| KOG1663|consensus | 237 | 98.54 | ||
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.53 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.5 | |
| KOG3987|consensus | 288 | 98.49 | ||
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 98.48 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.46 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.46 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.45 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.42 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.41 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.41 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.4 | |
| KOG1269|consensus | 364 | 98.39 | ||
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.38 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.37 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.35 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.3 | |
| KOG2352|consensus | 482 | 98.29 | ||
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.29 | |
| KOG2915|consensus | 314 | 98.25 | ||
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.23 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.23 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.22 | |
| KOG1709|consensus | 271 | 98.19 | ||
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.19 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.18 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.16 | |
| KOG0820|consensus | 315 | 98.14 | ||
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.14 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.13 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.11 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.09 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.05 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.02 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.94 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.93 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.93 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.92 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.9 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.87 | |
| KOG2187|consensus | 534 | 97.87 | ||
| KOG3201|consensus | 201 | 97.86 | ||
| KOG2730|consensus | 263 | 97.85 | ||
| KOG2798|consensus | 369 | 97.85 | ||
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.84 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.82 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.81 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.79 | |
| KOG4589|consensus | 232 | 97.77 | ||
| KOG3115|consensus | 249 | 97.77 | ||
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.77 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.75 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.7 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.7 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.68 | |
| KOG1122|consensus | 460 | 97.67 | ||
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.6 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.58 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.58 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.56 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.56 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.47 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.46 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.39 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.21 | |
| KOG1596|consensus | 317 | 97.21 | ||
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.19 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.1 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.98 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.81 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.75 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.74 | |
| KOG2793|consensus | 248 | 96.62 | ||
| KOG2198|consensus | 375 | 96.57 | ||
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.47 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 96.46 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.35 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.27 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.13 | |
| KOG2920|consensus | 282 | 96.12 | ||
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.97 | |
| KOG2361|consensus | 264 | 95.94 | ||
| KOG2539|consensus | 491 | 95.91 | ||
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.78 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.71 | |
| PHA01634 | 156 | hypothetical protein | 95.57 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.49 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.49 | |
| KOG1099|consensus | 294 | 95.42 | ||
| KOG1562|consensus | 337 | 95.42 | ||
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 95.37 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.21 | |
| KOG4058|consensus | 199 | 95.18 | ||
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 95.12 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.11 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.07 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.97 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 94.87 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 94.86 | |
| KOG0822|consensus | 649 | 94.53 | ||
| KOG2671|consensus | 421 | 94.5 | ||
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 94.48 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.33 | |
| KOG1501|consensus | 636 | 94.32 | ||
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 94.23 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.09 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.88 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.87 | |
| KOG1253|consensus | 525 | 93.49 | ||
| PRK13699 | 227 | putative methylase; Provisional | 93.48 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 93.33 | |
| KOG2352|consensus | 482 | 92.83 | ||
| KOG0024|consensus | 354 | 92.8 | ||
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 92.53 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 92.51 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 92.46 | |
| KOG1098|consensus | 780 | 92.13 | ||
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 92.01 | |
| KOG1209|consensus | 289 | 91.81 | ||
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 91.33 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 91.03 | |
| KOG2651|consensus | 476 | 90.9 | ||
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 90.79 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 90.45 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 90.2 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 90.16 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 89.6 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 89.45 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 89.38 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 89.28 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 88.93 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 88.9 | |
| KOG2918|consensus | 335 | 88.62 | ||
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 88.54 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 87.89 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 87.84 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.77 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 87.75 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.73 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 87.18 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 87.06 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 86.85 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 86.82 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 86.79 | |
| KOG2078|consensus | 495 | 86.59 | ||
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 86.58 | |
| PF06016 | 1289 | Reovirus_L2: Reovirus core-spike protein lambda-2 | 86.39 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 86.34 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 86.34 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 86.04 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 86.01 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 85.88 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 85.63 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.57 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 85.2 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 85.1 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 85.08 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 84.97 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 84.55 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.25 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 84.15 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 84.09 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 83.37 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.3 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 83.27 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 83.26 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 83.17 | |
| KOG3924|consensus | 419 | 83.15 | ||
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 83.06 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 82.96 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 82.79 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 82.7 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 82.63 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 82.57 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 82.52 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 81.85 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 81.62 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 81.53 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 81.35 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 81.25 | |
| KOG0821|consensus | 326 | 81.25 | ||
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 80.97 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 80.51 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 80.24 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 80.16 |
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-44 Score=292.29 Aligned_cols=264 Identities=51% Similarity=0.933 Sum_probs=240.5
Q ss_pred CCCCHHHHHHHHHHHhhccccCCCHHHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCe
Q psy11741 31 VQWDEEQEQQARKLVENNSVLQIDKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKN 110 (352)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 110 (352)
++|++++.+.++..+.++...........+|...+.+|||.||..+.++|+++++|+.+.++.+.+..+ ....+
T Consensus 1 ~~wske~~~~a~~~~k~~~~~~~~~~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~------~~~~~ 74 (264)
T KOG2361|consen 1 VEWSKEEEAAARKKVKEQSASRVLEEEVVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDE------KSAET 74 (264)
T ss_pred CCcCHHHHHHHHHHHhhccccccchhhhhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccc------cChhh
Confidence 468999999999999999999999999999999999999999999999999999999999999998753 22348
Q ss_pred EEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhh
Q psy11741 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL 190 (352)
Q Consensus 111 vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l 190 (352)
||+||||.|....++.+...+++..++++|.|+.+++..+++......++...+.|++.+.+.-+...+++|+|++.++|
T Consensus 75 ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvL 154 (264)
T KOG2361|consen 75 ILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVL 154 (264)
T ss_pred heeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEE
Confidence 99999999999999999876566999999999999999999988777888889999998766667778999999999999
Q ss_pred hccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEE
Q psy11741 191 DAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQ 270 (352)
Q Consensus 191 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~ 270 (352)
..++++....++++++++|||||.|++.+++..+..++++..+.++..++|.+++|+.
T Consensus 155 SAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~---------------------- 212 (264)
T KOG2361|consen 155 SAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTR---------------------- 212 (264)
T ss_pred eccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCce----------------------
Confidence 9999999999999999999999999999999999999999999998888888777754
Q ss_pred eeeeeeeeeecCCccceeeeeEeeEEeccccccchHHHHHHHhhcCchhhhhhhhhhhhhccccccceeeeeeehhccCC
Q psy11741 271 NLIDRRLQVNRGKQIKMYRVWIQAKSYFVHYLFVTEEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKYMKP 350 (352)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 350 (352)
.|+|+.++|..++++|||..+++.+++++.|+|+.+++|||+|+||+|.||
T Consensus 213 -----------------------------~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~ 263 (264)
T KOG2361|consen 213 -----------------------------AYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKP 263 (264)
T ss_pred -----------------------------eeeccHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecC
Confidence 356788888889999999999999999999999999999999999999999
Q ss_pred C
Q psy11741 351 L 351 (352)
Q Consensus 351 ~ 351 (352)
+
T Consensus 264 ~ 264 (264)
T KOG2361|consen 264 L 264 (264)
T ss_pred C
Confidence 5
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=184.51 Aligned_cols=195 Identities=26% Similarity=0.421 Sum_probs=150.3
Q ss_pred HHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeE
Q psy11741 56 NLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVF 135 (352)
Q Consensus 56 ~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~ 135 (352)
.....|++++.+| |..- ...+|..++.|.......+... ++.+|||||||||.++..+++.. +..+
T Consensus 12 ~v~~vF~~ia~~Y-D~~n--~~~S~g~~~~Wr~~~i~~~~~~---------~g~~vLDva~GTGd~a~~~~k~~--g~g~ 77 (238)
T COG2226 12 KVQKVFDKVAKKY-DLMN--DLMSFGLHRLWRRALISLLGIK---------PGDKVLDVACGTGDMALLLAKSV--GTGE 77 (238)
T ss_pred HHHHHHHhhHHHH-Hhhc--ccccCcchHHHHHHHHHhhCCC---------CCCEEEEecCCccHHHHHHHHhc--CCce
Confidence 4567788888888 4321 2347778888887777655433 38999999999999999999987 4779
Q ss_pred EEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEE
Q psy11741 136 VYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGM 214 (352)
Q Consensus 136 v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 214 (352)
|+|+|+|+.|++.|+++....+ .++.|+++|+. .+|+++++||+|.+.+.|+++ .+..++|++++|+|||||+
T Consensus 78 v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe----~LPf~D~sFD~vt~~fglrnv--~d~~~aL~E~~RVlKpgG~ 151 (238)
T COG2226 78 VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAE----NLPFPDNSFDAVTISFGLRNV--TDIDKALKEMYRVLKPGGR 151 (238)
T ss_pred EEEEECCHHHHHHHHHHhhccCccceEEEEechh----hCCCCCCccCEEEeeehhhcC--CCHHHHHHHHHHhhcCCeE
Confidence 9999999999999999987633 44999999998 788999999999999999999 7999999999999999999
Q ss_pred EEEEeCCCCchhhHh-------hh-----cCcccc--CceeecCCCeeeeccCHHHHHHHHHhCCCceEE
Q psy11741 215 VLFRDYGRYDLVQLR-------FK-----KGRCLQ--DNFYARGDGTLVYFFTREEVKTMFESAGFVEKQ 270 (352)
Q Consensus 215 l~~~~~~~~~~~~~~-------~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~ 270 (352)
+++.++..+....+. +. .+.... ...|.....+...+++.+++..+++++||..+.
T Consensus 152 ~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 152 LLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred EEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 999998776543321 11 011111 111111122333478899999999999999877
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=191.83 Aligned_cols=197 Identities=21% Similarity=0.336 Sum_probs=92.1
Q ss_pred HHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeE
Q psy11741 56 NLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVF 135 (352)
Q Consensus 56 ~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~ 135 (352)
.+.+.|+.++..| |... ...+|..+..|.......+... ++.+|||+|||||..+..+++..+ +..+
T Consensus 8 ~v~~~Fd~ia~~Y-D~~n--~~ls~g~~~~wr~~~~~~~~~~---------~g~~vLDv~~GtG~~~~~l~~~~~-~~~~ 74 (233)
T PF01209_consen 8 YVRKMFDRIAPRY-DRMN--DLLSFGQDRRWRRKLIKLLGLR---------PGDRVLDVACGTGDVTRELARRVG-PNGK 74 (233)
T ss_dssp --------------------------------SHHHHHHT-----------S--EEEEET-TTSHHHHHHGGGSS----E
T ss_pred HHHHHHHHHHHHh-CCCc--cccCCcHHHHHHHHHHhccCCC---------CCCEEEEeCCChHHHHHHHHHHCC-CccE
Confidence 3567888888888 5332 2236677778877555544332 378999999999999999998765 5679
Q ss_pred EEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEE
Q psy11741 136 VYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGM 214 (352)
Q Consensus 136 v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 214 (352)
|+|+|+|+.|++.|+++.... ..+++++++|+. .+|+++++||+|++.+.++++ .++.+++++++|+|||||.
T Consensus 75 v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~----~lp~~d~sfD~v~~~fglrn~--~d~~~~l~E~~RVLkPGG~ 148 (233)
T PF01209_consen 75 VVGVDISPGMLEVARKKLKREGLQNIEFVQGDAE----DLPFPDNSFDAVTCSFGLRNF--PDRERALREMYRVLKPGGR 148 (233)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTT----B--S-TT-EEEEEEES-GGG---SSHHHHHHHHHHHEEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHH----HhcCCCCceeEEEHHhhHHhh--CCHHHHHHHHHHHcCCCeE
Confidence 999999999999999987753 358999999998 678889999999999999999 7889999999999999999
Q ss_pred EEEEeCCCCchhhHhhh-----------cCccccC--ceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 215 VLFRDYGRYDLVQLRFK-----------KGRCLQD--NFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 215 l~~~~~~~~~~~~~~~~-----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
+++.+++.+....+... .+..+.. ..|.....+...+.+.+++.++++++||+.+..
T Consensus 149 l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 149 LVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp EEEEEEEB-SSHHHHHHHHH--------------------------------------------------
T ss_pred EEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99998877654332210 0111111 123333345556889999999999999997764
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-24 Score=189.74 Aligned_cols=211 Identities=14% Similarity=0.196 Sum_probs=142.2
Q ss_pred ccCCCHHHHHHhhHHhhhhHHHHhhhcc-ccccc-chhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHh
Q psy11741 50 VLQIDKNLIQTLNEDVAKNWDAFYNVHQ-NRFFK-DRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVE 127 (352)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~yw~~~y~~~~-~~f~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~ 127 (352)
..++++....+|++.+..||+..-.... ..+.. ...++...+...++.... .....++.+|||||||+|.++..+++
T Consensus 73 ~~s~~~~e~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~-~~~~~~g~~ILDIGCG~G~~s~~La~ 151 (322)
T PLN02396 73 TTSLNEDELAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPS-SAKPFEGLKFIDIGCGGGLLSEPLAR 151 (322)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchh-hccCCCCCEEEEeeCCCCHHHHHHHH
Confidence 3578999999999999999984111000 00001 111222222111111000 01123477999999999999999987
Q ss_pred hcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHH
Q psy11741 128 HCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQV 205 (352)
Q Consensus 128 ~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~ 205 (352)
.+.+|+|+|+|+.|++.|+++....+ .++.+.++|+. .+++.+++||+|++..+++|+ .+...+++++
T Consensus 152 ----~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae----~l~~~~~~FD~Vi~~~vLeHv--~d~~~~L~~l 221 (322)
T PLN02396 152 ----MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE----KLADEGRKFDAVLSLEVIEHV--ANPAEFCKSL 221 (322)
T ss_pred ----cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHH----HhhhccCCCCEEEEhhHHHhc--CCHHHHHHHH
Confidence 67899999999999999998764322 47899999986 445557899999999999999 6788999999
Q ss_pred HHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 206 YKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 206 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
.++|||||.+++.+++..................+...+......+++++++..+++++||++++.
T Consensus 222 ~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 222 SALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 999999999999988765322111111100001111111222334789999999999999999876
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=180.88 Aligned_cols=205 Identities=18% Similarity=0.184 Sum_probs=148.8
Q ss_pred cCCCHHHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcC
Q psy11741 51 LQIDKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCK 130 (352)
Q Consensus 51 ~~~~~~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~ 130 (352)
..++....++|.+.+..|||....-. ....-.......+.+.+... ...++.+|||+|||.|.++.++|+
T Consensus 10 ~~id~~e~~~F~~la~~wwd~~g~f~--~LH~~N~~rl~~i~~~~~~~-----~~l~g~~vLDvGCGgG~Lse~mAr--- 79 (243)
T COG2227 10 QNVDYKELDKFEALASRWWDPEGEFK--PLHKINPLRLDYIREVARLR-----FDLPGLRVLDVGCGGGILSEPLAR--- 79 (243)
T ss_pred ccCCHHHHHHHHHHHhhhcCCCCcee--eeeeeccchhhhhhhhhhcc-----cCCCCCeEEEecCCccHhhHHHHH---
Confidence 46788889999999999998422211 11110000001111111100 012489999999999999999999
Q ss_pred CCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcC
Q psy11741 131 NDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLK 210 (352)
Q Consensus 131 ~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk 210 (352)
.|++|+|+|+|+.+++.|+.++...+.++.+.+..+.+ +....++||+|+|..+++|+ +++..+++.+.+++|
T Consensus 80 -~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed----l~~~~~~FDvV~cmEVlEHv--~dp~~~~~~c~~lvk 152 (243)
T COG2227 80 -LGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED----LASAGGQFDVVTCMEVLEHV--PDPESFLRACAKLVK 152 (243)
T ss_pred -CCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHH----HHhcCCCccEEEEhhHHHcc--CCHHHHHHHHHHHcC
Confidence 78999999999999999999988877777788877763 33334899999999999999 788899999999999
Q ss_pred CCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 211 PGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 211 pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
|||.++++++++.....+....+...--.+.+.+......+.-++++...+..+|+.+.+..
T Consensus 153 P~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~ 214 (243)
T COG2227 153 PGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRK 214 (243)
T ss_pred CCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeec
Confidence 99999999999876655543332222122344444444568899999999999999888764
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-22 Score=176.24 Aligned_cols=198 Identities=18% Similarity=0.255 Sum_probs=135.4
Q ss_pred HHHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCe
Q psy11741 55 KNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNV 134 (352)
Q Consensus 55 ~~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~ 134 (352)
+...+.|+..+..| |..... ..+..+..|...... ++. ..++.+|||+|||+|.++..+++... +..
T Consensus 33 ~~v~~~f~~~A~~Y-D~~~~~--~s~g~~~~~r~~~~~-~~~--------~~~~~~VLDlGcGtG~~~~~la~~~~-~~~ 99 (261)
T PLN02233 33 NERQALFNRIAPVY-DNLNDL--LSLGQHRIWKRMAVS-WSG--------AKMGDRVLDLCCGSGDLAFLLSEKVG-SDG 99 (261)
T ss_pred HHHHHHHHHhhhHH-HHhhhh--hcCChhHHHHHHHHH-HhC--------CCCCCEEEEECCcCCHHHHHHHHHhC-CCC
Confidence 34567788888776 432211 123334444332222 222 12378999999999999998887643 456
Q ss_pred EEEEEeCCHHHHHHHHhcccc----CCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcC
Q psy11741 135 FVYGCDFSENAVNILKEHEEY----KPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLK 210 (352)
Q Consensus 135 ~v~gvD~s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk 210 (352)
+|+|+|+|+.|++.|+++... ...++.++++|+. .+|+++++||+|++.++++++ +++..++++++++||
T Consensus 100 ~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~----~lp~~~~sfD~V~~~~~l~~~--~d~~~~l~ei~rvLk 173 (261)
T PLN02233 100 KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT----DLPFDDCYFDAITMGYGLRNV--VDRLKAMQEMYRVLK 173 (261)
T ss_pred EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc----cCCCCCCCEeEEEEecccccC--CCHHHHHHHHHHHcC
Confidence 899999999999999876431 2357899999987 567778999999999999999 688999999999999
Q ss_pred CCEEEEEEeCCCCchhhHhhh-----------cCccccC-ceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 211 PGGMVLFRDYGRYDLVQLRFK-----------KGRCLQD-NFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 211 pgG~l~~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
|||.+++.++..+........ .+..... ..+.........+++.+++.++++++||+.+..
T Consensus 174 pGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~ 246 (261)
T PLN02233 174 PGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKH 246 (261)
T ss_pred cCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEE
Confidence 999999998876543211100 0000000 000000112234789999999999999998865
|
|
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-22 Score=168.41 Aligned_cols=202 Identities=23% Similarity=0.275 Sum_probs=139.5
Q ss_pred cccCCCHHHHHHhhHHhhhhHHHHh------hhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccH
Q psy11741 49 SVLQIDKNLIQTLNEDVAKNWDAFY------NVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122 (352)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~yw~~~y------~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~ 122 (352)
+...++.+..++|.+.+..+||+-- ..+..++.--+.-.....+...|.. .+.-+.+|||+|||+|.++
T Consensus 30 s~~si~~~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~-----k~~~g~~ilDvGCGgGLLS 104 (282)
T KOG1270|consen 30 STTSIDVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGS-----KPLLGMKILDVGCGGGLLS 104 (282)
T ss_pred ceecccHHHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCc-----cccCCceEEEeccCccccc
Confidence 3345666789999999999999522 2221111000000111111111110 1223688999999999999
Q ss_pred HHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---C----ceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccCh
Q psy11741 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---D----RCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINP 195 (352)
Q Consensus 123 ~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~----~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~ 195 (352)
.+||+ -|++|+|+|+++.|++.|+++....+ . ++.+...|+... .+.||.|+|..+++|+
T Consensus 105 epLAr----lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-------~~~fDaVvcsevleHV-- 171 (282)
T KOG1270|consen 105 EPLAR----LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-------TGKFDAVVCSEVLEHV-- 171 (282)
T ss_pred hhhHh----hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-------ccccceeeeHHHHHHH--
Confidence 99999 77899999999999999999844332 2 255666666532 3569999999999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccC---ceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 196 NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQD---NFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 196 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
.++..+++.+.++|||||.+++.+.++....+. .+..+.+ .+.+.+......|.++.++..+++.+++.+...
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~---~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v 247 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINRTILSFA---GTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDV 247 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhh---ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhh
Confidence 999999999999999999999999887543322 1111111 123344455567899999999999999887765
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=164.37 Aligned_cols=196 Identities=19% Similarity=0.308 Sum_probs=134.3
Q ss_pred HHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEE
Q psy11741 59 QTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYG 138 (352)
Q Consensus 59 ~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~g 138 (352)
..|++++.+|-+..|+........ ..+.+.+..++... ..++.+|||+|||+|.++..+++ .+.+|+|
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~~r~--~~~~~~~~~~l~~l------~~~~~~vLDiGcG~G~~a~~la~----~g~~v~~ 71 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQIRQ--AILWQDLDRLLAEL------PPRPLRVLDAGGGEGQTAIKLAE----LGHQVIL 71 (255)
T ss_pred CChhhHHHHHHHhccCCCccHHHH--HHHHHHHHHHHHhc------CCCCCEEEEeCCCchHHHHHHHH----cCCEEEE
Confidence 467888888877777653322111 11223333344332 12367999999999999999998 6679999
Q ss_pred EeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEE
Q psy11741 139 CDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216 (352)
Q Consensus 139 vD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (352)
+|+|+.|++.|+++....+ .+++++++|+.+. .++.+++||+|++..+++|+ .++..+++++.++|||||+++
T Consensus 72 vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l---~~~~~~~fD~V~~~~vl~~~--~~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 72 CDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI---AQHLETPVDLILFHAVLEWV--ADPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred EECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH---hhhcCCCCCEEEehhHHHhh--CCHHHHHHHHHHHcCCCeEEE
Confidence 9999999999998876543 5788999998742 12346799999999999999 677899999999999999999
Q ss_pred EEeCCCCchhhHhhhcCcc--ccCceee--cCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 217 FRDYGRYDLVQLRFKKGRC--LQDNFYA--RGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
+..++...........+.. ....... .........++++++..+++++||+++..
T Consensus 147 i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~ 205 (255)
T PRK11036 147 LMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGK 205 (255)
T ss_pred EEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeee
Confidence 8877654321111111100 0000000 01111224578999999999999999865
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=160.61 Aligned_cols=197 Identities=19% Similarity=0.333 Sum_probs=135.2
Q ss_pred HHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEE
Q psy11741 57 LIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFV 136 (352)
Q Consensus 57 ~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v 136 (352)
....|+..+..| |.+.. ...+.....|....+..+. ..++.+|||+|||+|.++..+++... ++.+|
T Consensus 7 ~~~~f~~~a~~y-d~~~~--~~~~~~~~~~~~~~l~~l~---------~~~~~~vLDiGcG~G~~~~~la~~~~-~~~~v 73 (231)
T TIGR02752 7 VHKVFEKIYKKY-DRMNS--VISFQRHKKWRKDTMKRMN---------VQAGTSALDVCCGTADWSIALAEAVG-PEGHV 73 (231)
T ss_pred HHHHHHHhhhHH-hHHHH--HhcCCchHHHHHHHHHhcC---------CCCCCEEEEeCCCcCHHHHHHHHHhC-CCCEE
Confidence 456666666666 54321 1234455566544444332 22378999999999999999988753 56699
Q ss_pred EEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEE
Q psy11741 137 YGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215 (352)
Q Consensus 137 ~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 215 (352)
+|+|+|+.|++.|+++.... ..++.++.+|+.. +++++++||+|++..+++++ ++...+++++.++|+|||.+
T Consensus 74 ~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~V~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l 147 (231)
T TIGR02752 74 IGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME----LPFDDNSFDYVTIGFGLRNV--PDYMQVLREMYRVVKPGGKV 147 (231)
T ss_pred EEEECCHHHHHHHHHHHHhcCCCceEEEEechhc----CCCCCCCccEEEEecccccC--CCHHHHHHHHHHHcCcCeEE
Confidence 99999999999999886542 2578999999873 44567899999999999988 67789999999999999999
Q ss_pred EEEeCCCCchhhHhhh-----------cCccccCce--eecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 216 LFRDYGRYDLVQLRFK-----------KGRCLQDNF--YARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 216 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
++.+...++....... .+..+.... +....+....+++.+++.++++++||.+++..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 217 (231)
T TIGR02752 148 VCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVK 217 (231)
T ss_pred EEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEE
Confidence 9887655433211100 000000000 00001123356889999999999999988764
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-20 Score=152.62 Aligned_cols=195 Identities=21% Similarity=0.339 Sum_probs=139.9
Q ss_pred HHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCC----CC
Q psy11741 58 IQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKN----DN 133 (352)
Q Consensus 58 ~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~----~~ 133 (352)
-..|...+..| |..+.. .+...++-|.......+-|. ++.++||+|||||.++..+.+.... .+
T Consensus 63 ~~vF~~vA~~Y-D~mND~--mSlGiHRlWKd~~v~~L~p~---------~~m~~lDvaGGTGDiaFril~~v~s~~~~~~ 130 (296)
T KOG1540|consen 63 HHVFESVAKKY-DIMNDA--MSLGIHRLWKDMFVSKLGPG---------KGMKVLDVAGGTGDIAFRILRHVKSQFGDRE 130 (296)
T ss_pred HHHHHHHHHHH-HHHHHH--hhcchhHHHHHHhhhccCCC---------CCCeEEEecCCcchhHHHHHHhhccccCCCC
Confidence 34556666665 443322 23445555654444544443 3799999999999999999987732 23
Q ss_pred eEEEEEeCCHHHHHHHHhccccC----CCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhc
Q psy11741 134 VFVYGCDFSENAVNILKEHEEYK----PDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYL 209 (352)
Q Consensus 134 ~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~L 209 (352)
.+|+++|+|+.|+..++++.... ...+.++++|+. .+|+++.+||..++.+.|.++ .++.+.|++++|+|
T Consensus 131 ~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE----~LpFdd~s~D~yTiafGIRN~--th~~k~l~EAYRVL 204 (296)
T KOG1540|consen 131 SKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE----DLPFDDDSFDAYTIAFGIRNV--THIQKALREAYRVL 204 (296)
T ss_pred ceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc----cCCCCCCcceeEEEecceecC--CCHHHHHHHHHHhc
Confidence 78999999999999999987442 245899999998 788999999999999999988 89999999999999
Q ss_pred CCCEEEEEEeCCCCchhhHh-hhc----------CccccC--ceeecCCCeeeeccCHHHHHHHHHhCCCceEE
Q psy11741 210 KPGGMVLFRDYGRYDLVQLR-FKK----------GRCLQD--NFYARGDGTLVYFFTREEVKTMFESAGFVEKQ 270 (352)
Q Consensus 210 kpgG~l~~~~~~~~~~~~~~-~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~ 270 (352)
||||+|.+.+++..+...+. +-. +..+.. ..|.....+...+.+.+++..+++++||..+.
T Consensus 205 KpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 205 KPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred CCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 99999999988765522221 110 100000 00111223344578999999999999999886
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=159.38 Aligned_cols=151 Identities=21% Similarity=0.327 Sum_probs=115.6
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||||||+|..+..++.. .+.+|+|+|+|+.|++.|+++... ..++.+..+|+. ..++++++||+|+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~---~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~----~~~~~~~~FD~V~ 122 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEK---YGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDIL----KKDFPENTFDMIY 122 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhh---cCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcc----cCCCCCCCeEEEE
Confidence 34789999999999999988874 456999999999999999988654 357899999987 4456688999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+++|++..+...++++++++|||||.+++.++........... .. . +. ......+.+.+++..+++++|
T Consensus 123 s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~----~~-~-~~--~~~~~~~~~~~~~~~~l~~aG 194 (263)
T PTZ00098 123 SRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEE----FK-A-YI--KKRKYTLIPIQEYGDLIKSCN 194 (263)
T ss_pred EhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHH----HH-H-HH--HhcCCCCCCHHHHHHHHHHCC
Confidence 9999999866689999999999999999999987644321000000 00 0 00 001123468999999999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|.++...
T Consensus 195 F~~v~~~ 201 (263)
T PTZ00098 195 FQNVVAK 201 (263)
T ss_pred CCeeeEE
Confidence 9998763
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=159.17 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..++..+ ++.+|+|+|+|+.|++.|+++ ++.++++|+.. ++ ++++||+|++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~--p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~----~~-~~~~fD~v~~ 95 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW--PGAVIEALDSSPEMVAAARER------GVDARTGDVRD----WK-PKPDTDVVVS 95 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHhc------CCcEEEcChhh----CC-CCCCceEEEE
Confidence 37899999999999999999876 678999999999999999764 47889999863 22 3578999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh----hhcCccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR----FKKGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
+.++||+ .++..++++++++|||||.+++..++........ ......+..............+.+.+++.++++
T Consensus 96 ~~~l~~~--~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 96 NAALQWV--PEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred ehhhhhC--CCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 9999999 6788999999999999999999755422111110 000000000000000111223568999999999
Q ss_pred hCCCceEEeee
Q psy11741 263 SAGFVEKQNLI 273 (352)
Q Consensus 263 ~~Gf~~~~~~~ 273 (352)
++||++.....
T Consensus 174 ~aGf~v~~~~~ 184 (255)
T PRK14103 174 DAGCKVDAWET 184 (255)
T ss_pred hCCCeEEEEee
Confidence 99998655443
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-19 Score=163.17 Aligned_cols=156 Identities=19% Similarity=0.284 Sum_probs=114.2
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
.++.+|||||||+|.++..+++.+ +.+|+|+|+|+.|++.|+++....+ .++.+.++|+. .+++++++||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~---g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~----~~~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY---GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL----NQPFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc----cCCCCCCCccE
Confidence 357899999999999999999853 5699999999999999998765432 57999999987 45677899999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh--hhc-CccccCceeecCCCeeeeccCHHHHHHH
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR--FKK-GRCLQDNFYARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (352)
|++..+++|+ .+...++++++++|||||.|++.++......... ... ...+..... .......+.+.+++..+
T Consensus 190 V~s~~~~~h~--~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~~~p~~~s~~~~~~~ 265 (340)
T PLN02244 190 VWSMESGEHM--PDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKIC--AAYYLPAWCSTSDYVKL 265 (340)
T ss_pred EEECCchhcc--CCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHH--hhccCCCCCCHHHHHHH
Confidence 9999999999 6788999999999999999999875432110000 000 000000000 00001123589999999
Q ss_pred HHhCCCceEEee
Q psy11741 261 FESAGFVEKQNL 272 (352)
Q Consensus 261 l~~~Gf~~~~~~ 272 (352)
++++||..+...
T Consensus 266 l~~aGf~~v~~~ 277 (340)
T PLN02244 266 AESLGLQDIKTE 277 (340)
T ss_pred HHHCCCCeeEee
Confidence 999999998753
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-19 Score=155.80 Aligned_cols=107 Identities=21% Similarity=0.470 Sum_probs=91.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|..+..+++.+..++.+++|+|+|+.|++.|+++.... ..++.++++|+.+ +++ ..+|+|+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~----~~~--~~~D~vv 130 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD----IAI--ENASMVV 130 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh----CCC--CCCCEEe
Confidence 7799999999999998888754337889999999999999999987653 2479999999874 333 3599999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++.++||+++++...++++++++|||||.|++.+.
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999999877788999999999999999999874
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-19 Score=148.24 Aligned_cols=138 Identities=29% Similarity=0.486 Sum_probs=103.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+++|+|+|+.+++. .++.....+.. ....++++||+|+|.
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~----~~~~~~g~D~~~~~~~~---------~~~~~~~~~~~----~~~~~~~~fD~i~~~ 85 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAK----RGFEVTGVDISPQMIEK---------RNVVFDNFDAQ----DPPFPDGSFDLIICN 85 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHH----TTSEEEEEESSHHHHHH---------TTSEEEEEECH----THHCHSSSEEEEEEE
T ss_pred CCEEEEEcCCCCHHHHHHHH----hCCEEEEEECCHHHHhh---------hhhhhhhhhhh----hhhccccchhhHhhH
Confidence 78999999999999999977 55699999999999988 11233333322 122347899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|+ .++..+|+++.++|||||++++.++.........+.. ..+....+.+..+++.+++..+++++||+
T Consensus 86 ~~l~~~--~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ll~~~G~~ 157 (161)
T PF13489_consen 86 DVLEHL--PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLK------WRYDRPYGGHVHFFSPDELRQLLEQAGFE 157 (161)
T ss_dssp SSGGGS--SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHH------CCGTCHHTTTTEEBBHHHHHHHHHHTTEE
T ss_pred HHHhhc--ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHh------cCCcCccCceeccCCHHHHHHHHHHCCCE
Confidence 999999 6899999999999999999999987754211111111 01111111344679999999999999999
Q ss_pred eEE
Q psy11741 268 EKQ 270 (352)
Q Consensus 268 ~~~ 270 (352)
+++
T Consensus 158 iv~ 160 (161)
T PF13489_consen 158 IVE 160 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
|
... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.5e-19 Score=134.37 Aligned_cols=106 Identities=24% Similarity=0.408 Sum_probs=89.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc--cCCCceEEEEecC-CCCCCCCCCCCCcceE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE--YKPDRCHAFVCDV-TSEDWNPPFAPESLDI 183 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~--~~~~~v~~~~~d~-~~~~~~~~~~~~~fD~ 183 (352)
|+.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.|+++.. ....+++++++|+ .. .. ..+.||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~-~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF--PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFD----PD-FLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGG----TT-TSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccC----cc-cCCCCCE
Confidence 37899999999999999999965 88899999999999999999983 3458999999999 32 11 2456999
Q ss_pred EEehh-hhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIF-VLDAI-NPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~-~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|++.. +++++ +.++...+++.+++.|+|||++++.+
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99998 55544 33678899999999999999999974
|
... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=146.39 Aligned_cols=140 Identities=16% Similarity=0.289 Sum_probs=109.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++. .+.+++|+|+|+.|++.|+++.. ...++++|+. .+++++++||+|+++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~----~~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~----~~~~~~~~fD~V~s~ 110 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRE----RGSQVTALDLSPPMLAQARQKDA----ADHYLAGDIE----SLPLATATFDLAWSN 110 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHH----cCCeEEEEECCHHHHHHHHhhCC----CCCEEEcCcc----cCcCCCCcEEEEEEC
Confidence 67899999999999988877 66799999999999999988753 2467889986 455667899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++++ .++..++.++.++|+|||.+++..++......+.-.... . ........+++.+++..++...|+.
T Consensus 111 ~~l~~~--~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~-~------~~~~~~~~~~~~~~l~~~l~~~~~~ 181 (251)
T PRK10258 111 LAVQWC--GNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQA-V------DERPHANRFLPPDAIEQALNGWRYQ 181 (251)
T ss_pred chhhhc--CCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHH-h------ccCCccccCCCHHHHHHHHHhCCce
Confidence 999988 788999999999999999999998776544333211100 0 0112233578899999999988876
Q ss_pred e
Q psy11741 268 E 268 (352)
Q Consensus 268 ~ 268 (352)
.
T Consensus 182 ~ 182 (251)
T PRK10258 182 H 182 (251)
T ss_pred e
Confidence 4
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=165.00 Aligned_cols=146 Identities=25% Similarity=0.422 Sum_probs=113.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||||||+|..+..+++. .+.+|+|+|+|+.|++.|+++......++.+.++|+.. .++++++||+|++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~I~s 338 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAEN---FDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTK----KTYPDNSFDVIYS 338 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHh---cCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCccc----CCCCCCCEEEEEE
Confidence 4779999999999999999885 45689999999999999998876555678999999873 4456789999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhh-HhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQ-LRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
..+++|+ .++..++++++++|||||.+++.++....... ..+. .+. ...+ ....+.+++.++++++|
T Consensus 339 ~~~l~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-------~~~-~~~g--~~~~~~~~~~~~l~~aG 406 (475)
T PLN02336 339 RDTILHI--QDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFA-------EYI-KQRG--YDLHDVQAYGQMLKDAG 406 (475)
T ss_pred CCccccc--CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHH-------HHH-HhcC--CCCCCHHHHHHHHHHCC
Confidence 9999999 67889999999999999999998764322100 0000 000 0001 13468899999999999
Q ss_pred CceEEe
Q psy11741 266 FVEKQN 271 (352)
Q Consensus 266 f~~~~~ 271 (352)
|.++..
T Consensus 407 F~~i~~ 412 (475)
T PLN02336 407 FDDVIA 412 (475)
T ss_pred Ceeeee
Confidence 999865
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=148.39 Aligned_cols=201 Identities=18% Similarity=0.222 Sum_probs=133.3
Q ss_pred CCCHHHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCC
Q psy11741 52 QIDKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKN 131 (352)
Q Consensus 52 ~~~~~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~ 131 (352)
++.+..+..|+..++.||+..-.... ...-.......+...+. ..++.+|||+|||+|.++..+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~--------~~~~~~vLdiG~G~G~~~~~l~~---- 68 (233)
T PRK05134 3 NVDPAEIAKFSALAARWWDPNGEFKP--LHRINPLRLNYIREHAG--------GLFGKRVLDVGCGGGILSESMAR---- 68 (233)
T ss_pred cccHHHHHHHHHHHHHHhccCCCcHH--HHHhhHHHHHHHHHhcc--------CCCCCeEEEeCCCCCHHHHHHHH----
Confidence 45677899999999999985321111 00101111122222221 22478999999999999988887
Q ss_pred CCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCC
Q psy11741 132 DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKP 211 (352)
Q Consensus 132 ~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp 211 (352)
.+.+++++|+++.+++.|+++....+..+.+...|+.+. .....++||+|++..+++++ .+...+++.+.++|+|
T Consensus 69 ~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~Ii~~~~l~~~--~~~~~~l~~~~~~L~~ 143 (233)
T PRK05134 69 LGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEEL---AAEHPGQFDVVTCMEMLEHV--PDPASFVRACAKLVKP 143 (233)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHh---hhhcCCCccEEEEhhHhhcc--CCHHHHHHHHHHHcCC
Confidence 456899999999999999987654444677777777642 11235789999999999998 6778899999999999
Q ss_pred CEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 212 GGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 212 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
||.+++..+..............................+++.+++.++++++||.++..
T Consensus 144 gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 144 GGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred CcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 999999876543211110000000000001111222345689999999999999999876
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=154.23 Aligned_cols=151 Identities=19% Similarity=0.270 Sum_probs=108.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||||||+|.++..++... + ..|+|+|+|+.|+..++..... ...++.++.+|+. .+++ +++||+|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g--~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e----~lp~-~~~FD~V 193 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAG--A-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE----QLPA-LKAFDTV 193 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC--C-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH----HCCC-cCCcCEE
Confidence 37899999999999999998853 2 2699999999999765443221 2357899999987 4455 6789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+|..+++|+ .++..++++++++|+|||.+++.+............+ ...|... .......+.+++..+++++
T Consensus 194 ~s~~vl~H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p-----~~~y~~~-~~~~~lps~~~l~~~L~~a 265 (322)
T PRK15068 194 FSMGVLYHR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP-----GDRYAKM-RNVYFIPSVPALKNWLERA 265 (322)
T ss_pred EECChhhcc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc-----hhHHhcC-ccceeCCCHHHHHHHHHHc
Confidence 999999998 7888999999999999999998754322111000000 0001000 1112246899999999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||+.++...
T Consensus 266 GF~~i~~~~ 274 (322)
T PRK15068 266 GFKDVRIVD 274 (322)
T ss_pred CCceEEEEe
Confidence 999998754
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.8e-19 Score=130.20 Aligned_cols=95 Identities=26% Similarity=0.491 Sum_probs=82.5
Q ss_pred EEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhh
Q psy11741 112 LEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLD 191 (352)
Q Consensus 112 LD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~ 191 (352)
||+|||+|..+..+++. ++.+++|+|+|+.+++.++++... .++.+..+|+. .+++++++||+|++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~----~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR---GGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAE----DLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT---TTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTT----SSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc---cCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHH----hCcccccccccccccccee
Confidence 89999999999999995 578999999999999999998754 34669999987 6688899999999999999
Q ss_pred ccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 192 AINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 192 ~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
|+ +++..+++++.|+|||||++++
T Consensus 72 ~~--~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL--EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ec--cCHHHHHHHHHHHcCcCeEEeC
Confidence 99 8999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=151.21 Aligned_cols=158 Identities=18% Similarity=0.331 Sum_probs=114.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|..+..+++.+..++.+++|+|+|+.|++.|+++.... ..+++++++|+.+ +++ ..+|+|+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~----~~~--~~~d~v~ 127 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH----VEI--KNASMVI 127 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh----CCC--CCCCEEe
Confidence 6799999999999999998865436889999999999999999887643 3468999999974 333 3589999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh---------hhcCccccC-cee--ecCCCeeeeccC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR---------FKKGRCLQD-NFY--ARGDGTLVYFFT 253 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---------~~~~~~~~~-~~~--~~~~~~~~~~~~ 253 (352)
+.+++||+++++...++++++++|+|||.+++.+.......... +........ ... ...-.......+
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 207 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDS 207 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCC
Confidence 99999999877889999999999999999999875432211100 000000000 000 000011234679
Q ss_pred HHHHHHHHHhCCCceEEe
Q psy11741 254 REEVKTMFESAGFVEKQN 271 (352)
Q Consensus 254 ~~~~~~ll~~~Gf~~~~~ 271 (352)
.+++.++++++||..++.
T Consensus 208 ~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 208 IETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHHcCCchHHH
Confidence 999999999999986553
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-18 Score=143.28 Aligned_cols=137 Identities=21% Similarity=0.354 Sum_probs=105.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|..+..+++ .+.+|+|+|+|+.|++.++++....+ .++.+.+.|+.. .++ +++||+|++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~----~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~----~~~-~~~fD~I~~ 101 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAA----NGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN----LTF-DGEYDFILS 101 (197)
T ss_pred CCcEEEECCCCCHHHHHHHH----CCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh----CCc-CCCcCEEEE
Confidence 67999999999999999998 67799999999999999998766533 458888888864 233 467999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe-CCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD-YGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
..++|++++++...+++++.++|+|||.+++.. +...+. ....+ ..+.++.+++...++ |
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~----------------~~~~~-~~~~~~~~el~~~~~--~ 162 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY----------------PCTVG-FPFAFKEGELRRYYE--G 162 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC----------------CCCCC-CCCccCHHHHHHHhC--C
Confidence 999999987889999999999999999966543 221110 00011 123478899999887 8
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|.++...
T Consensus 163 ~~~~~~~ 169 (197)
T PRK11207 163 WEMVKYN 169 (197)
T ss_pred CeEEEee
Confidence 9887653
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=141.02 Aligned_cols=170 Identities=16% Similarity=0.148 Sum_probs=119.1
Q ss_pred hhHHHHhhhccccccc--chhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH
Q psy11741 67 KNWDAFYNVHQNRFFK--DRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN 144 (352)
Q Consensus 67 ~yw~~~y~~~~~~f~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~ 144 (352)
++|++.|......|.. ....+...+..+.. .++.+|||+|||.|..+..||+ .|.+|+|+|+|+.
T Consensus 1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~---------~~~~rvLd~GCG~G~da~~LA~----~G~~V~gvD~S~~ 67 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALGL---------PAGARVFVPLCGKSLDLAWLAE----QGHRVLGVELSEI 67 (213)
T ss_pred ChHHHHHhcCCCCCccCCCCHHHHHHHHhhCC---------CCCCeEEEeCCCchhHHHHHHh----CCCeEEEEeCCHH
Confidence 3789888776655532 22333333332211 1267999999999999999998 8899999999999
Q ss_pred HHHHHHhccc-------------cCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCC
Q psy11741 145 AVNILKEHEE-------------YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKP 211 (352)
Q Consensus 145 ~l~~a~~~~~-------------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp 211 (352)
+++.+.+... ....++++.++|+.+... ...++||.|+-..+++|++++.....++.+.++|||
T Consensus 68 Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp 144 (213)
T TIGR03840 68 AVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA---ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP 144 (213)
T ss_pred HHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc---ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC
Confidence 9998643211 123568999999985321 113579999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 212 GGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 212 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
||++++..+...... . +...+.++.+++.+++.. +|.+...
T Consensus 145 gG~~ll~~~~~~~~~-----------------~-~gpp~~~~~~eL~~~f~~-~~~i~~~ 185 (213)
T TIGR03840 145 GARQLLITLDYDQSE-----------------M-AGPPFSVSPAEVEALYGG-HYEIELL 185 (213)
T ss_pred CCeEEEEEEEcCCCC-----------------C-CCcCCCCCHHHHHHHhcC-CceEEEE
Confidence 998777655431100 0 111245889999998863 4555544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-18 Score=143.93 Aligned_cols=138 Identities=14% Similarity=0.237 Sum_probs=105.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|..+..+++ .+.+|+|+|+|+.|++.++++....+.++.+...|+.. .++ +++||+|++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~----~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~----~~~-~~~fD~I~~~ 101 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL----AGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINA----AAL-NEDYDFIFST 101 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchh----ccc-cCCCCEEEEe
Confidence 67999999999999999998 66799999999999999988776544457777778753 223 3579999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.++++++.++...++++++++|+|||++++.+...... +..+ ....+.++++++.+++. +|+
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~---------------~~~~-~~~~~~~~~~el~~~f~--~~~ 163 (195)
T TIGR00477 102 VVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD---------------YPCH-MPFSFTFKEDELRQYYA--DWE 163 (195)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC---------------CCCC-CCcCccCCHHHHHHHhC--CCe
Confidence 99999987888999999999999999966654321100 0000 11123588999999986 588
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
++...
T Consensus 164 ~~~~~ 168 (195)
T TIGR00477 164 LLKYN 168 (195)
T ss_pred EEEee
Confidence 77664
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=146.76 Aligned_cols=152 Identities=21% Similarity=0.294 Sum_probs=119.1
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
...+|.+|||||||.|.+++.+|+. -+.+|+|+++|+++.+.+++++...+ .++++...|..+. .+.|
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~---y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-------~e~f 138 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEE---YGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-------EEPF 138 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHH---cCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc-------cccc
Confidence 4567999999999999999999996 46799999999999999999876644 4788999988743 3459
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHH
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 261 (352)
|-|++..+++|+..+.....++.+.++|+|||.+++..+..+..... .....+.. |..+++ ..++..++....
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~--~~~~~i~~--yiFPgG---~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR--RFPDFIDK--YIFPGG---ELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc--cchHHHHH--hCCCCC---cCCCHHHHHHHH
Confidence 99999999999988899999999999999999999988766542221 00000111 111222 246788999999
Q ss_pred HhCCCceEEee
Q psy11741 262 ESAGFVEKQNL 272 (352)
Q Consensus 262 ~~~Gf~~~~~~ 272 (352)
+++||.+.+..
T Consensus 212 ~~~~~~v~~~~ 222 (283)
T COG2230 212 SEAGFVVLDVE 222 (283)
T ss_pred HhcCcEEehHh
Confidence 99999988764
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=149.62 Aligned_cols=143 Identities=24% Similarity=0.301 Sum_probs=110.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.|+++.. ..++.+..+|+. .+++++++||+|++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~--~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e----~lp~~~~sFDvVIs 184 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAE----DLPFPTDYADRYVS 184 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHH----hCCCCCCceeEEEE
Confidence 36799999999999999988876 55789999999999999998754 246788999987 45566789999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
..+++++ .+...++++++++|+|||.+++.....+.....+. ... ....+.+.+++.++++++||
T Consensus 185 ~~~L~~~--~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~-----~~~--------~~~~~~t~eEl~~lL~~aGF 249 (340)
T PLN02490 185 AGSIEYW--PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRF-----FAD--------VWMLFPKEEEYIEWFTKAGF 249 (340)
T ss_pred cChhhhC--CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHH-----hhh--------hhccCCCHHHHHHHHHHCCC
Confidence 9999998 56678999999999999999886543221100000 000 01123578999999999999
Q ss_pred ceEEee
Q psy11741 267 VEKQNL 272 (352)
Q Consensus 267 ~~~~~~ 272 (352)
+.++..
T Consensus 250 ~~V~i~ 255 (340)
T PLN02490 250 KDVKLK 255 (340)
T ss_pred eEEEEE
Confidence 998764
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=142.66 Aligned_cols=182 Identities=19% Similarity=0.218 Sum_probs=121.7
Q ss_pred HHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeE
Q psy11741 56 NLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVF 135 (352)
Q Consensus 56 ~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~ 135 (352)
...+.|+..+..| |..- ...++..+..|....+..+.... .++.+|||+|||+|.++..+++.. +.+
T Consensus 10 ~v~~~f~~iA~~Y-D~~n--~~~s~g~~~~wr~~~~~~l~~~~-------~~~~~VLDlGcGtG~~~~~l~~~~---~~~ 76 (226)
T PRK05785 10 ELQEAYNKIPKAY-DRAN--RFISFNQDVRWRAELVKTILKYC-------GRPKKVLDVAAGKGELSYHFKKVF---KYY 76 (226)
T ss_pred HHHHHHHhhhHHH-HHhh--hhccCCCcHHHHHHHHHHHHHhc-------CCCCeEEEEcCCCCHHHHHHHHhc---CCE
Confidence 3557788888887 4321 11245566677666555554321 126799999999999999998853 458
Q ss_pred EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEE
Q psy11741 136 VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215 (352)
Q Consensus 136 v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 215 (352)
|+|+|+|+.|++.|+++. .++++|+. .+|+++++||+|++.++++|+ .++..++++++++|||.+.
T Consensus 77 v~gvD~S~~Ml~~a~~~~-------~~~~~d~~----~lp~~d~sfD~v~~~~~l~~~--~d~~~~l~e~~RvLkp~~~- 142 (226)
T PRK05785 77 VVALDYAENMLKMNLVAD-------DKVVGSFE----ALPFRDKSFDVVMSSFALHAS--DNIEKVIAEFTRVSRKQVG- 142 (226)
T ss_pred EEEECCCHHHHHHHHhcc-------ceEEechh----hCCCCCCCEEEEEecChhhcc--CCHHHHHHHHHHHhcCceE-
Confidence 999999999999998752 35678876 567889999999999999998 7889999999999999432
Q ss_pred EEEeCCCCchhhHh---------hh--cCccccC--ceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 216 LFRDYGRYDLVQLR---------FK--KGRCLQD--NFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 216 ~~~~~~~~~~~~~~---------~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
++ +++.++....+ .. .+..+.. ..|.-...+...+.+.+++.++++++|
T Consensus 143 il-e~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~ 204 (226)
T PRK05785 143 FI-AMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA 204 (226)
T ss_pred EE-EeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 22 33332211111 00 0111111 111112223345788999999999974
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.6e-18 Score=136.36 Aligned_cols=109 Identities=25% Similarity=0.460 Sum_probs=91.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..++.... ++.+++|+|+|+.|++.|+++++..+ .++++.++|+.+.. .. ++ ++||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~-~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~-~~-~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELN-PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP-QE-LE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHST-TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC-GC-SS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcC-CCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccc-cc-cC-CCeeEEE
Confidence 378999999999999999995432 67899999999999999999876533 47999999998521 11 33 7999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+..+++++ .+...+++++.++|++||.+++.++.
T Consensus 79 ~~~~l~~~--~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHF--PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGT--SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhc--cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999 78889999999999999999998765
|
... |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-18 Score=150.59 Aligned_cols=137 Identities=20% Similarity=0.301 Sum_probs=107.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|..+..+++ .+.+|+|+|+|+.|++.+++++...+.++.+...|+... .+ +++||+|++.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~----~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~----~~-~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL----LGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSA----SI-QEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcc----cc-cCCccEEEEc
Confidence 56999999999999999998 677999999999999999988776556788888888642 22 6789999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++++++++...+++++.++|+|||++++........ +. ........++..++.+++.. |+
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~---------------~~-~~~p~~~~~~~~el~~~~~~--~~ 253 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTED---------------YP-CPMPFSFTFKEGELKDYYQD--WE 253 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc---------------CC-CCCCCCcccCHHHHHHHhCC--CE
Confidence 99999988889999999999999999977643221110 00 01122345889999999864 77
Q ss_pred eEEe
Q psy11741 268 EKQN 271 (352)
Q Consensus 268 ~~~~ 271 (352)
++..
T Consensus 254 i~~~ 257 (287)
T PRK12335 254 IVKY 257 (287)
T ss_pred EEEE
Confidence 7765
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=146.85 Aligned_cols=154 Identities=18% Similarity=0.258 Sum_probs=112.9
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|..+..+++... +..+|+|+|+|+.|++.|+++....+ .++.+..+|+. .+++++++||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g-~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~----~l~~~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVG-PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIE----ALPVADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchh----hCCCCCCceeEE
Confidence 3588999999999998887776543 45689999999999999998865432 57889999986 455667899999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..++++. .+...+++++.++|||||++++.++............... ...+......+.+++..+++++
T Consensus 151 i~~~v~~~~--~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~~~~l~~a 221 (272)
T PRK11873 151 ISNCVINLS--PDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAE-------LYAGCVAGALQEEEYLAMLAEA 221 (272)
T ss_pred EEcCcccCC--CCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHH-------HHhccccCCCCHHHHHHHHHHC
Confidence 999999887 6778899999999999999999765432110000000000 0001111236788999999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||..+....
T Consensus 222 Gf~~v~i~~ 230 (272)
T PRK11873 222 GFVDITIQP 230 (272)
T ss_pred CCCceEEEe
Confidence 999887643
|
|
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=133.65 Aligned_cols=151 Identities=23% Similarity=0.291 Sum_probs=110.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceE-EEEecCCCCCCCCC-CCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCH-AFVCDVTSEDWNPP-FAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~-~~~~d~~~~~~~~~-~~~~~fD~V 184 (352)
...||++|||||..-...--. |+.+|+++|+++.|-+.|.+.+.. ...++. |+.++..+ ++ ++++++|.|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~---p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~----l~~l~d~s~DtV 149 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWK---PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGEN----LPQLADGSYDTV 149 (252)
T ss_pred ccceEEecccCCCCcccccCC---CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhc----CcccccCCeeeE
Confidence 456899999999886554322 788999999999999999888765 345666 88888874 44 568999999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..+++.. +++.+.|++++++|+|||++++.++...................+....+|.. ++. +..+.++++
T Consensus 150 V~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~---ltr-d~~e~Leda 223 (252)
T KOG4300|consen 150 VCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCV---LTR-DTGELLEDA 223 (252)
T ss_pred EEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceE---Eeh-hHHHHhhhc
Confidence 999999988 89999999999999999999999887654333222222222222223334433 333 355677888
Q ss_pred CCceEEe
Q psy11741 265 GFVEKQN 271 (352)
Q Consensus 265 Gf~~~~~ 271 (352)
.|..+..
T Consensus 224 ~f~~~~~ 230 (252)
T KOG4300|consen 224 EFSIDSC 230 (252)
T ss_pred ccccchh
Confidence 8887765
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=141.92 Aligned_cols=140 Identities=22% Similarity=0.421 Sum_probs=110.5
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+|||||||+|..+..+++.+ ++.+++|+|+|+.+++.|+++.... ..++.+...|+... ++ .++||+|++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~--~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~----~~-~~~fD~I~~~ 74 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH--PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD----PF-PDTYDLVFGF 74 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC----CC-CCCCCEeehH
Confidence 79999999999999999876 6679999999999999999887542 35789999998642 33 3589999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|+ .+...++++++++|+|||.+++.++....... . .......++.+..++.++++++||.
T Consensus 75 ~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--------~------~~~~~~~~~~s~~~~~~~l~~~Gf~ 138 (224)
T smart00828 75 EVIHHI--KDKMDLFSNISRHLKDGGHLVLADFIANLLSA--------I------EHEETTSYLVTREEWAELLARNNLR 138 (224)
T ss_pred HHHHhC--CCHHHHHHHHHHHcCCCCEEEEEEcccccCcc--------c------cccccccccCCHHHHHHHHHHCCCe
Confidence 999999 67889999999999999999998764321000 0 0011122357899999999999999
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
+++..
T Consensus 139 ~~~~~ 143 (224)
T smart00828 139 VVEGV 143 (224)
T ss_pred EEEeE
Confidence 98764
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=146.31 Aligned_cols=154 Identities=19% Similarity=0.296 Sum_probs=107.7
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
...++.+|||||||.|.++..+++. .|++|+|+.+|+...+.|++++...+ .++++...|..+. +.+|
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~---~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-------~~~f 128 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAER---YGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-------PGKF 128 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHH---H--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----------S-
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHH---cCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-------CCCC
Confidence 4556999999999999999999996 37799999999999999999887644 5789999998742 3499
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcC--ccccCceeecCCCeeeeccCHHHHHH
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKG--RCLQDNFYARGDGTLVYFFTREEVKT 259 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
|.|++..+++|+..++...+++++.++|+|||.+++..+............. ..+.... .+.+ ..++.+++..
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyi--FPgg---~lps~~~~~~ 203 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYI--FPGG---YLPSLSEILR 203 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHT--STTS------BHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEee--CCCC---CCCCHHHHHH
Confidence 9999999999998889999999999999999999998766544322211110 1111111 1222 2367888999
Q ss_pred HHHhCCCceEEee
Q psy11741 260 MFESAGFVEKQNL 272 (352)
Q Consensus 260 ll~~~Gf~~~~~~ 272 (352)
.++++||.+....
T Consensus 204 ~~~~~~l~v~~~~ 216 (273)
T PF02353_consen 204 AAEDAGLEVEDVE 216 (273)
T ss_dssp HHHHTT-EEEEEE
T ss_pred HHhcCCEEEEEEE
Confidence 9999999988764
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-18 Score=129.12 Aligned_cols=99 Identities=22% Similarity=0.475 Sum_probs=82.5
Q ss_pred EEEEcCCccccHHHHHhhcCC-CCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh-
Q psy11741 111 ILEIGCGVGNSVFPIVEHCKN-DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF- 188 (352)
Q Consensus 111 vLD~GcG~G~~~~~l~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~- 188 (352)
|||+|||+|..+..++..+.. +..+++|+|+|+.|++.++++....+.++++++.|+. .++..+++||+|++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~----~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADAR----DLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTT----CHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHh----HCcccCCCeeEEEEcCC
Confidence 799999999999999987621 2379999999999999999998766568999999997 4556678999999954
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCE
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGG 213 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG 213 (352)
+++|+++++...+++++.++|+|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5999999999999999999999998
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-17 Score=139.98 Aligned_cols=149 Identities=19% Similarity=0.283 Sum_probs=110.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..++. .+.+++|+|+|+.|++.|+++..... .++.+.++|+.. + +++||+|
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~----~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~---~~~fD~i 123 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAK----RGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS----L---CGEFDIV 123 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh----C---CCCcCEE
Confidence 378999999999999999987 55689999999999999998876433 378999999874 2 2789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..+++|++++++..+++++.+++++++++.+...+.. ...... .. ..+..........+++.+++.++++++
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~-~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~ 197 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAW-LAFLKM-IG----ELFPGSSRATSAYLHPMTDLERALGEL 197 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchH-HHHHHH-HH----hhCcCcccccceEEecHHHHHHHHHHc
Confidence 999999998777889999999999998776665322211 111100 01 111111122344668999999999999
Q ss_pred CCceEEee
Q psy11741 265 GFVEKQNL 272 (352)
Q Consensus 265 Gf~~~~~~ 272 (352)
||.++...
T Consensus 198 Gf~v~~~~ 205 (219)
T TIGR02021 198 GWKIVREG 205 (219)
T ss_pred Cceeeeee
Confidence 99998764
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=148.27 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=105.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc--cCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE--YKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++++|||+|||+|.++..++... ...|+|+|+|+.|+..++.... ....++.+..+++.+ ++. ..+||+|
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g---~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~----lp~-~~~FD~V 192 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHG---AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ----LHE-LYAFDTV 192 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC---CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH----CCC-CCCcCEE
Confidence 47899999999999998888742 2379999999999986543211 123467788888763 333 3589999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+|..+++|+ .++..+|++++++|+|||.|++.+............+ ...+.. .......++..++..+++++
T Consensus 193 ~s~gvL~H~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p-----~~ry~k-~~nv~flpS~~~L~~~L~~a 264 (314)
T TIGR00452 193 FSMGVLYHR--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP-----KDRYAK-MKNVYFIPSVSALKNWLEKV 264 (314)
T ss_pred EEcchhhcc--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCc-----hHHHHh-ccccccCCCHHHHHHHHHHC
Confidence 999999999 7888999999999999999999764321110000000 000000 01112346899999999999
Q ss_pred CCceEEeeee
Q psy11741 265 GFVEKQNLID 274 (352)
Q Consensus 265 Gf~~~~~~~~ 274 (352)
||+.++....
T Consensus 265 GF~~V~i~~~ 274 (314)
T TIGR00452 265 GFENFRILDV 274 (314)
T ss_pred CCeEEEEEec
Confidence 9999987543
|
Known examples to date are restricted to the proteobacteria. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.8e-17 Score=142.55 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=108.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||||||+|.++..+++.+ ++.+|+|+|+|+.|++.|+++. .++.+..+|+.. +. ++++||+|++
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~----~~-~~~~fD~v~~ 99 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW--PAARITGIDSSPAMLAEARSRL----PDCQFVEADIAS----WQ-PPQALDLIFA 99 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhc----cC-CCCCccEEEE
Confidence 37899999999999999999876 6789999999999999998875 357889999863 22 3468999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh-h--hcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR-F--KKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
+.+++|+ .+...+++++.++|+|||.+++............ . ......+...+.........+.+..++.+++.+
T Consensus 100 ~~~l~~~--~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (258)
T PRK01683 100 NASLQWL--PDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAP 177 (258)
T ss_pred ccChhhC--CCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHh
Confidence 9999999 6778999999999999999999653321111000 0 000000011111111112245678899999999
Q ss_pred CCCceEEe
Q psy11741 264 AGFVEKQN 271 (352)
Q Consensus 264 ~Gf~~~~~ 271 (352)
+|+.+...
T Consensus 178 ~g~~v~~~ 185 (258)
T PRK01683 178 AACRVDIW 185 (258)
T ss_pred CCCceeee
Confidence 99876443
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=131.15 Aligned_cols=138 Identities=19% Similarity=0.301 Sum_probs=102.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
++++||+|||.|+.+..||+ .|..|+++|.|+.+++.+++.+...+..++..+.|+.+. .+ ++.||+|++.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~----~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~----~~-~~~yD~I~st 101 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLAS----QGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDF----DF-PEEYDFIVST 101 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHH----TT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCB----S--TTTEEEEEEE
T ss_pred CCcEEEcCCCCcHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhc----cc-cCCcCEEEEE
Confidence 78999999999999999999 899999999999999999888776667799999998743 23 4689999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.++++++++....+++.+.+.++|||++++........ +.. .....+.+.+.++...+. |++
T Consensus 102 ~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d---------------~p~-~~~~~f~~~~~EL~~~y~--dW~ 163 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD---------------YPC-PSPFPFLLKPGELREYYA--DWE 163 (192)
T ss_dssp SSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS---------------S---SS--S--B-TTHHHHHTT--TSE
T ss_pred EEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC---------------CCC-CCCCCcccCHHHHHHHhC--CCe
Confidence 99999999999999999999999999988865421100 011 112233467788888876 677
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
++...
T Consensus 164 il~y~ 168 (192)
T PF03848_consen 164 ILKYN 168 (192)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76643
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-17 Score=140.92 Aligned_cols=157 Identities=17% Similarity=0.225 Sum_probs=111.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcC--CCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK--NDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..|++... .++.+++|+|+|+.|++.|+++... .++.+...+... ++..+++||+|+
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~----l~~~~~~fD~V~ 134 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--PGVTFRQAVSDE----LVAEGERFDVVT 134 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--CCCeEEEEeccc----ccccCCCccEEE
Confidence 67999999999999988876432 1456999999999999999887543 346666666542 333568999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCcc-ccCceeecCCC--eeeeccCHHHHHHHHH
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRC-LQDNFYARGDG--TLVYFFTREEVKTMFE 262 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~ll~ 262 (352)
++.++||+++++...+++++.++++ |.+++.+..........+..... .....+...++ ....+++.+++.++++
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 9999999976667899999999998 56666676665332222211111 11111222232 3345899999999999
Q ss_pred hCCCceEEeee
Q psy11741 263 SAGFVEKQNLI 273 (352)
Q Consensus 263 ~~Gf~~~~~~~ 273 (352)
+ ||++.....
T Consensus 213 ~-Gf~~~~~~~ 222 (232)
T PRK06202 213 Q-GWRVERQWP 222 (232)
T ss_pred C-CCeEEeccc
Confidence 9 999887654
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=135.96 Aligned_cols=172 Identities=16% Similarity=0.161 Sum_probs=118.3
Q ss_pred hhhHHHHhhhcccccc-cc-hhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH
Q psy11741 66 AKNWDAFYNVHQNRFF-KD-RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE 143 (352)
Q Consensus 66 ~~yw~~~y~~~~~~f~-~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 143 (352)
.++|++.|......|. .. ...+...+..+. ..++.+|||+|||.|..+..||+ .|.+|+|+|+|+
T Consensus 3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~---------~~~~~rvL~~gCG~G~da~~LA~----~G~~V~avD~s~ 69 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALA---------LPAGSRVLVPLCGKSLDMLWLAE----QGHEVLGVELSE 69 (218)
T ss_pred HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhC---------CCCCCeEEEeCCCChHhHHHHHh----CCCeEEEEccCH
Confidence 4579988877665453 22 223333332221 11267999999999999999998 889999999999
Q ss_pred HHHHHHHhccc-------------cCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcC
Q psy11741 144 NAVNILKEHEE-------------YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLK 210 (352)
Q Consensus 144 ~~l~~a~~~~~-------------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk 210 (352)
.+++.+.+... ....++++.++|+.+.. +...+.||+|+-..+++|++++.....++.+.++|+
T Consensus 70 ~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~---~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~ 146 (218)
T PRK13255 70 LAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT---AADLADVDAVYDRAALIALPEEMRERYVQQLAALLP 146 (218)
T ss_pred HHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC---cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC
Confidence 99998743211 12356889999998532 112358999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 211 PGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 211 pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
|||.+++........ ..+...+..+.+++.+++.. +|.+....
T Consensus 147 pgG~~~l~~~~~~~~------------------~~~gPp~~~~~~el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 147 AGCRGLLVTLDYPQE------------------ELAGPPFSVSDEEVEALYAG-CFEIELLE 189 (218)
T ss_pred CCCeEEEEEEEeCCc------------------cCCCCCCCCCHHHHHHHhcC-CceEEEee
Confidence 999755533321100 00111235889999999853 36665543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.5e-17 Score=138.74 Aligned_cols=161 Identities=18% Similarity=0.218 Sum_probs=111.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.+++|||||||+|.++..++.+ ....|+|+|++.......+......+ ..+......+. .++. .+.||+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~---GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE----~Lp~-~~~FDtV 186 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR---GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVE----DLPN-LGAFDTV 186 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc---CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchh----hccc-cCCcCEE
Confidence 3899999999999999999884 33379999999987666433222222 22222223333 4454 6789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+|..|++|. .++...|+++++.|+|||.|++.+..........+ .....|. .........+...+..+++++
T Consensus 187 F~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L-----~P~~rYa-~m~nv~FiPs~~~L~~wl~r~ 258 (315)
T PF08003_consen 187 FSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVL-----VPEDRYA-KMRNVWFIPSVAALKNWLERA 258 (315)
T ss_pred EEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEE-----ccCCccc-CCCceEEeCCHHHHHHHHHHc
Confidence 999999999 88999999999999999999998764332221111 1111121 122233457999999999999
Q ss_pred CCceEEeeeeeeeeeecCC
Q psy11741 265 GFVEKQNLIDRRLQVNRGK 283 (352)
Q Consensus 265 Gf~~~~~~~~~~~~~~~~~ 283 (352)
||..+++.-...+......
T Consensus 259 gF~~v~~v~~~~Tt~~EQR 277 (315)
T PF08003_consen 259 GFKDVRCVDVSPTTIEEQR 277 (315)
T ss_pred CCceEEEecCccCCHHHhc
Confidence 9999998665555544333
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-17 Score=132.02 Aligned_cols=220 Identities=13% Similarity=0.133 Sum_probs=139.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
...+|.|+|||+|..+..|+++. |+..++|+|.|++|++.|+++. ++++|..+|+.. .. +....|++++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~Rw--P~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~---w~--p~~~~dllfa 98 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRW--PDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRT---WK--PEQPTDLLFA 98 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhC--CCCeEeeccCCHHHHHHHHHhC----CCCceecccHhh---cC--CCCccchhhh
Confidence 47899999999999999999998 9999999999999999998774 678999999985 22 3578999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhh----cCccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFK----KGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
+.+++++ ++-..+|.++...|.|||+|.+..+...+...-..- ....+... +....-......++..+.+++.
T Consensus 99 NAvlqWl--pdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~-l~~~~~~r~~v~s~a~Yy~lLa 175 (257)
T COG4106 99 NAVLQWL--PDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQE-LGGRGLTRAPLPSPAAYYELLA 175 (257)
T ss_pred hhhhhhc--cccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhh-hCccccccCCCCCHHHHHHHhC
Confidence 9999999 788999999999999999999987654432222111 11111111 1111112334678899999998
Q ss_pred hCCCceEEeeeeeeeeeecCCccceeeeeEeeEEecccc--ccchHHHHHHHhhcCchhhhhhhhhhhhhccccccceee
Q psy11741 263 SAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVHY--LFVTEEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYR 340 (352)
Q Consensus 263 ~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~el~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~r 340 (352)
..+-.+.--...+..+.. +......|+...-.. -| -.+.++-+..|.+- ...+........+-..-+.|+|
T Consensus 176 ~~~~rvDiW~T~Y~h~l~---~a~aIvdWvkgTgLr-P~L~~L~e~~~~~FL~~Y---~~~l~~aYP~~~dGr~ll~FpR 248 (257)
T COG4106 176 PLACRVDIWHTTYYHQLP---GADAIVDWVKGTGLR-PYLDRLDEEERQRFLDRY---LALLAEAYPPRADGRVLLAFPR 248 (257)
T ss_pred cccceeeeeeeeccccCC---Cccchhhheeccccc-eeccccCHHHHHHHHHHH---HHHHHHhCCCccCCcEEeecce
Confidence 877665443332222222 222333455543210 01 12222222222210 0011111222223345568999
Q ss_pred eeeehhc
Q psy11741 341 VWIQAKY 347 (352)
Q Consensus 341 ~~~~~~~ 347 (352)
+||.|+.
T Consensus 249 lFiVA~~ 255 (257)
T COG4106 249 LFIVATR 255 (257)
T ss_pred EEEEEec
Confidence 9998864
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=139.06 Aligned_cols=166 Identities=18% Similarity=0.312 Sum_probs=124.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.++++.. .++.++.+|+.. .++++++||+|++.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~----~~~~~~~fD~vi~~ 105 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF--PQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEK----LPLEDSSFDLIVSN 105 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC--CCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhh----CCCCCCceeEEEEh
Confidence 5789999999999999999876 66789999999999999988764 368899999874 44567899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|+ .+...++.++.++|+|||.+++.++............. .....+.+.+++.+++.++ |.
T Consensus 106 ~~l~~~--~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~-f~ 170 (240)
T TIGR02072 106 LALQWC--DDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFG------------QHGLRYLSLDELKALLKNS-FE 170 (240)
T ss_pred hhhhhc--cCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHH------------HhccCCCCHHHHHHHHHHh-cC
Confidence 999999 67889999999999999999998776544322211000 0122457889999999988 87
Q ss_pred eEEeeeeeeeeeecCCccceeeeeEeeEEeccccccchHHHHHHHhhcCchh
Q psy11741 268 EKQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVHYLFVTEEVKTMFESAGFVE 319 (352)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGF~~ 319 (352)
........ +..++.+..++.+.+...|...
T Consensus 171 ~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~g~~~ 200 (240)
T TIGR02072 171 LLTLEEEL----------------------ITLSFDDPLDVLRHLKKTGANG 200 (240)
T ss_pred CcEEEEEE----------------------EEEeCCCHHHHHHHHHHhccCc
Confidence 66543211 1123446677777777777543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=141.26 Aligned_cols=148 Identities=17% Similarity=0.203 Sum_probs=102.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC------CCceEEEEecCCCCCCCCCCCCCc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK------PDRCHAFVCDVTSEDWNPPFAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~ 180 (352)
++.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|+++.... ..++.+...|+.. + +++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~----~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~----l---~~~ 212 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLAL----EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES----L---SGK 212 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh----c---CCC
Confidence 367999999999999999998 6679999999999999999986542 2457888888752 1 578
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhh-hcCccccCceeecCCCeeeeccCHHHHHH
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF-KKGRCLQDNFYARGDGTLVYFFTREEVKT 259 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
||+|+|..+++|++.+....+++.+.+ +.+||.++. . .+........ ..+..+ .........++++.+++..
T Consensus 213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs-~-~p~~~~~~~l~~~g~~~----~g~~~~~r~y~~s~eel~~ 285 (315)
T PLN02585 213 YDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS-F-APKTLYYDILKRIGELF----PGPSKATRAYLHAEADVER 285 (315)
T ss_pred cCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE-e-CCcchHHHHHHHHHhhc----CCCCcCceeeeCCHHHHHH
Confidence 999999999999866666677887775 456666443 2 2221111000 111111 0011112334568999999
Q ss_pred HHHhCCCceEEee
Q psy11741 260 MFESAGFVEKQNL 272 (352)
Q Consensus 260 ll~~~Gf~~~~~~ 272 (352)
+++++||++....
T Consensus 286 lL~~AGf~v~~~~ 298 (315)
T PLN02585 286 ALKKAGWKVARRE 298 (315)
T ss_pred HHHHCCCEEEEEE
Confidence 9999999987654
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=138.06 Aligned_cols=159 Identities=23% Similarity=0.409 Sum_probs=114.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..++..+. +..+++|+|+++.+++.++++... ...++.+..+|+.+ .+++.++||+|+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~I~ 126 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVG-KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA----LPFPDNSFDAVT 126 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc----CCCCCCCccEEE
Confidence 68999999999999999988762 257999999999999999998754 23568899999874 334567899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhh-----------cCccccCc--eeecCCCeeeecc
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFK-----------KGRCLQDN--FYARGDGTLVYFF 252 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~~ 252 (352)
+..+++++ .+...+++.+.++|+|||.+++.+...+........ .+...... .+.........++
T Consensus 127 ~~~~l~~~--~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (239)
T PRK00216 127 IAFGLRNV--PDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFP 204 (239)
T ss_pred EecccccC--CCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCC
Confidence 99999988 678899999999999999998877654332111000 00000000 0000001112356
Q ss_pred CHHHHHHHHHhCCCceEEeee
Q psy11741 253 TREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 253 ~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
+.+++..+++++||+++....
T Consensus 205 ~~~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 205 DQEELAAMLEEAGFERVRYRN 225 (239)
T ss_pred CHHHHHHHHHhCCCceeeeee
Confidence 889999999999999887643
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=137.00 Aligned_cols=157 Identities=25% Similarity=0.310 Sum_probs=112.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC-ceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD-RCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++ .+..++|+|+|+.+++.++++....+. ++.+...|+.+.. ....++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLAR----LGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA---EKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh---cCCCCCccEEE
Confidence 377999999999999998887 445799999999999999988765444 5888888876421 11147899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+++++ .++..+++.+.++|+|||.+++...+.............................+++..++.++++++|
T Consensus 118 ~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 118 CMEVLEHV--PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred ehhHHHhC--CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence 99999999 6788999999999999999998876543211111000000000111111222234678999999999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|++++..
T Consensus 196 ~~i~~~~ 202 (224)
T TIGR01983 196 LRVKDVK 202 (224)
T ss_pred Ceeeeee
Confidence 9998764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=136.85 Aligned_cols=195 Identities=17% Similarity=0.219 Sum_probs=124.0
Q ss_pred HHHHHhhHHhhhhHHHHhhhccccccc-----chhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcC
Q psy11741 56 NLIQTLNEDVAKNWDAFYNVHQNRFFK-----DRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCK 130 (352)
Q Consensus 56 ~~~~~~~~~~~~yw~~~y~~~~~~f~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~ 130 (352)
.+...|+..+...|+.+|......... ...-....+...++.. ...++.+|||+|||+|.++..+++
T Consensus 12 ~v~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~vLDvGcG~G~~~~~l~~--- 83 (230)
T PRK07580 12 EVRTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPAD-----GDLTGLRILDAGCGVGSLSIPLAR--- 83 (230)
T ss_pred hhhHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHhc-----CCCCCCEEEEEeCCCCHHHHHHHH---
Confidence 345667777777799888753321110 0001111111122210 122367999999999999999987
Q ss_pred CCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHh
Q psy11741 131 NDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKY 208 (352)
Q Consensus 131 ~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~ 208 (352)
.+..|+|+|+|+.|++.|+++....+ .++.+..+|+.. .+++||+|++..+++|++.++...+++.+.+.
T Consensus 84 -~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~ 155 (230)
T PRK07580 84 -RGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-------LLGRFDTVVCLDVLIHYPQEDAARMLAHLASL 155 (230)
T ss_pred -cCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-------ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhh
Confidence 45579999999999999998876533 378889888431 25789999999999998777888999999987
Q ss_pred cCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 209 LKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 209 LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
+++++++.+.... ......... ...+. .........+++..++.++++++||.+....
T Consensus 156 ~~~~~~i~~~~~~-~~~~~~~~l-~~~~~----~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 213 (230)
T PRK07580 156 TRGSLIFTFAPYT-PLLALLHWI-GGLFP----GPSRTTRIYPHREKGIRRALAAAGFKVVRTE 213 (230)
T ss_pred cCCeEEEEECCcc-HHHHHHHHh-ccccC----CccCCCCccccCHHHHHHHHHHCCCceEeee
Confidence 7655444332111 111111111 11100 0112223346789999999999999988764
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=136.61 Aligned_cols=158 Identities=26% Similarity=0.483 Sum_probs=113.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|..+..+++... ...+++|+|+++.+++.++++.. ...++.+..+|+.+ .+++.++||+|++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~-~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~----~~~~~~~~D~i~~ 112 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAP-DRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEA----LPFEDNSFDAVTI 112 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcC-CCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhc----CCCCCCcEEEEEE
Confidence 378999999999999999998762 22689999999999999998865 34568899999874 3345678999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh----h-----h--cCccccCc--eeecCCCeeeeccC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR----F-----K--KGRCLQDN--FYARGDGTLVYFFT 253 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~----~-----~--~~~~~~~~--~~~~~~~~~~~~~~ 253 (352)
..+++++ .+...+++.+.++|+|||.+++.+...+...... . . .+...... .+....+....+++
T Consensus 113 ~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (223)
T TIGR01934 113 AFGLRNV--TDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPS 190 (223)
T ss_pred eeeeCCc--ccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCC
Confidence 9999988 6788999999999999999998776433211000 0 0 00000000 00000011123568
Q ss_pred HHHHHHHHHhCCCceEEee
Q psy11741 254 REEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 254 ~~~~~~ll~~~Gf~~~~~~ 272 (352)
.+++..+++++||..+...
T Consensus 191 ~~~~~~~l~~aGf~~~~~~ 209 (223)
T TIGR01934 191 QEELAAMLKEAGFEEVRYR 209 (223)
T ss_pred HHHHHHHHHHcCCccceee
Confidence 8999999999999987764
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-16 Score=140.93 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=103.6
Q ss_pred hhHHhhhhHHHHhhhccc-ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEE
Q psy11741 61 LNEDVAKNWDAFYNVHQN-RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGC 139 (352)
Q Consensus 61 ~~~~~~~yw~~~y~~~~~-~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gv 139 (352)
|+....+.|++.+..... ........+......++... .++.+|||+|||+|..+..|++.+. .+.+|+|+
T Consensus 23 yd~~G~~lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~-------~~~~~iLELGcGtG~~t~~Ll~~l~-~~~~~~~i 94 (301)
T TIGR03438 23 YDARGSELFEQICELPEYYPTRTEAAILERHADEIAAAT-------GAGCELVELGSGSSRKTRLLLDALR-QPARYVPI 94 (301)
T ss_pred ccchHHHHHHHHHCCCccccHHHHHHHHHHHHHHHHHhh-------CCCCeEEecCCCcchhHHHHHHhhc-cCCeEEEE
Confidence 555555666655432110 11122234444444444332 1267899999999999999999762 26799999
Q ss_pred eCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCC--CCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEE
Q psy11741 140 DFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPP--FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215 (352)
Q Consensus 140 D~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 215 (352)
|+|+.|++.|+++.... ..++.++++|+.+.. .++ ...+...++++..+++++++++...+|++++++|+|||.|
T Consensus 95 DiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~ 173 (301)
T TIGR03438 95 DISADALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGL 173 (301)
T ss_pred ECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 99999999998886542 245778899997531 111 1111334555556788898889999999999999999999
Q ss_pred EEEeCCCC
Q psy11741 216 LFRDYGRY 223 (352)
Q Consensus 216 ~~~~~~~~ 223 (352)
++......
T Consensus 174 lig~d~~~ 181 (301)
T TIGR03438 174 LIGVDLVK 181 (301)
T ss_pred EEeccCCC
Confidence 98654443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=137.84 Aligned_cols=158 Identities=20% Similarity=0.251 Sum_probs=112.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..++..+. +..+++|+|+|+.+++.++++......++.+...|+.. .++++++||+|++
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~v~~ 93 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVG-PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG----LPFPDGSFDAVRS 93 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc----CCCCCCCceEEEE
Confidence 378999999999999999988763 46799999999999999998744445678999999873 3455789999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
..+++|+ .++..+++++.++|+|||.+++.++........ ....... ...................+..+++++||
T Consensus 94 ~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 169 (241)
T PRK08317 94 DRVLQHL--EDPARALAEIARVLRPGGRVVVLDTDWDTLVWH-SGDRALM-RKILNFWSDHFADPWLGRRLPGLFREAGL 169 (241)
T ss_pred echhhcc--CCHHHHHHHHHHHhcCCcEEEEEecCCCceeec-CCChHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHcCC
Confidence 9999999 678899999999999999999877532110000 0000000 00000000001112456789999999999
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
..+....
T Consensus 170 ~~~~~~~ 176 (241)
T PRK08317 170 TDIEVEP 176 (241)
T ss_pred CceeEEE
Confidence 9887644
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-18 Score=126.35 Aligned_cols=98 Identities=29% Similarity=0.469 Sum_probs=66.1
Q ss_pred EEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEehhhh
Q psy11741 112 LEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL 190 (352)
Q Consensus 112 LD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l 190 (352)
||+|||+|.++..+++.+ +..+++|+|+|+.|++.|+++..... .+......+..+.. .....++||+|++..++
T Consensus 1 LdiGcG~G~~~~~l~~~~--~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL--PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLF--DYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC---EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS-----CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChh--hcccccccceehhhhhH
Confidence 799999999999999987 78999999999999999988877643 34444444443211 11123699999999999
Q ss_pred hccChhHHHHHHHHHHHhcCCCEEE
Q psy11741 191 DAINPNKMQHVINQVYKYLKPGGMV 215 (352)
Q Consensus 191 ~~~~~~~~~~~l~~~~~~LkpgG~l 215 (352)
||+ +++..++++++++|+|||+|
T Consensus 77 ~~l--~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL--EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S----S-HHHHHHHHTTT-TSS-EE
T ss_pred hhh--hhHHHHHHHHHHHcCCCCCC
Confidence 999 89999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=132.34 Aligned_cols=101 Identities=24% Similarity=0.374 Sum_probs=86.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|..+..++... ++.+++|+|+|+.|++.|+++. +++.+.++|+.+ ++++++||+|++.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~--~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-----~~~~~sfD~V~~~ 112 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL--PFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-----PFKDNFFDLVLTK 112 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC--CCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-----CCCCCCEEEEEEC
Confidence 6789999999999999998865 5779999999999999998864 346788888763 4568899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+++|++++++..+++++.+++ ++.+++.++.
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 9999998888999999999997 5677777654
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=137.84 Aligned_cols=141 Identities=16% Similarity=0.257 Sum_probs=100.2
Q ss_pred hhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCcccc----HHHHHhhcC---CCCeEEEEEeCCHHHH
Q psy11741 74 NVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNS----VFPIVEHCK---NDNVFVYGCDFSENAV 146 (352)
Q Consensus 74 ~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~----~~~l~~~~~---~~~~~v~gvD~s~~~l 146 (352)
..+.+.|+.+...+......++|..... ....++.+|||+|||+|.. +..+++... ..+.+|+|+|+|+.|+
T Consensus 67 ti~~T~FfR~~~~~~~l~~~vlp~l~~~-~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L 145 (264)
T smart00138 67 TTNETRFFRESKHFEALEEKVLPLLIAS-RRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL 145 (264)
T ss_pred hcCCCcccCCcHHHHHHHHHHhHHHHHh-cCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH
Confidence 4455677776554433333333321100 0122357999999999974 444555432 1257999999999999
Q ss_pred HHHHhcccc----------------------------CCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHH
Q psy11741 147 NILKEHEEY----------------------------KPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKM 198 (352)
Q Consensus 147 ~~a~~~~~~----------------------------~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~ 198 (352)
+.|++..-. ...++.|.++|+.+ .+.+.++||+|+|.++++|+++++.
T Consensus 146 ~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~----~~~~~~~fD~I~crnvl~yf~~~~~ 221 (264)
T smart00138 146 EKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA----ESPPLGDFDLIFCRNVLIYFDEPTQ 221 (264)
T ss_pred HHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC----CCCccCCCCEEEechhHHhCCHHHH
Confidence 999986410 11368999999984 3335789999999999999988888
Q ss_pred HHHHHHHHHhcCCCEEEEEEe
Q psy11741 199 QHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 199 ~~~l~~~~~~LkpgG~l~~~~ 219 (352)
..++++++++|+|||+|++..
T Consensus 222 ~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 222 RKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred HHHHHHHHHHhCCCeEEEEEC
Confidence 999999999999999999963
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=126.33 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=98.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|..+..++... ++.+|+|+|+|+.|++.|+++.+..+ .++++.++|+.+ .+. .++||+|++
T Consensus 46 g~~VLDiGcGtG~~al~la~~~--~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~----~~~-~~~fDlV~~ 118 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR--PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE----FGQ-EEKFDVVTS 118 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC--CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh----CCC-CCCccEEEE
Confidence 7899999999999999998765 77899999999999999999877644 459999999874 333 578999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
.. + .++..+++.++++|+|||.+++.... ....++..+.+..|+
T Consensus 119 ~~----~--~~~~~~l~~~~~~LkpGG~lv~~~~~------------------------------~~~~~l~~~~~~~~~ 162 (187)
T PRK00107 119 RA----V--ASLSDLVELCLPLLKPGGRFLALKGR------------------------------DPEEEIAELPKALGG 162 (187)
T ss_pred cc----c--cCHHHHHHHHHHhcCCCeEEEEEeCC------------------------------ChHHHHHHHHHhcCc
Confidence 64 2 45678999999999999999987432 234557777777888
Q ss_pred ceEEee
Q psy11741 267 VEKQNL 272 (352)
Q Consensus 267 ~~~~~~ 272 (352)
.+....
T Consensus 163 ~~~~~~ 168 (187)
T PRK00107 163 KVEEVI 168 (187)
T ss_pred eEeeeE
Confidence 876653
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-16 Score=147.65 Aligned_cols=111 Identities=26% Similarity=0.454 Sum_probs=92.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|..+..+++.+ ++.+++|+|+|+.|++.|+++....+.++.++++|+.+. ...+++++||+|++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~--P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL--p~~fedeSFDvVVs 493 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET--EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL--SSSFEKESVDTIVY 493 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC--ccccCCCCEEEEEE
Confidence 37899999999999998888876 788999999999999999987655456788889998742 11256789999999
Q ss_pred hhhhhcc-----------ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAI-----------NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+.++|++ +.++...++++++++|||||.+++.+..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 9988865 2357889999999999999999998743
|
|
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-16 Score=122.17 Aligned_cols=130 Identities=27% Similarity=0.443 Sum_probs=102.7
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+|||+|||.|.++..|++.. -...++|+|+|+.+++.|+..++..+ ..|+|.+.|+.++ .+..++||+|+-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg--f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~----~~~~~qfdlvlD 142 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG--FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP----DFLSGQFDLVLD 142 (227)
T ss_pred cceeeccCCchHHHHHHHHhc--CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC----cccccceeEEee
Confidence 399999999999999999854 22248999999999999988776543 3499999999964 344688999998
Q ss_pred hhhhhccC--hh----HHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHH
Q psy11741 187 IFVLDAIN--PN----KMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 187 ~~~l~~~~--~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (352)
..++..++ ++ .+...+..+.++|+|||+++|...+ ++.+++.+.
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN------------------------------~T~dELv~~ 192 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN------------------------------FTKDELVEE 192 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC------------------------------ccHHHHHHH
Confidence 77665552 22 2345678889999999999998665 789999999
Q ss_pred HHhCCCceEEeeee
Q psy11741 261 FESAGFVEKQNLID 274 (352)
Q Consensus 261 l~~~Gf~~~~~~~~ 274 (352)
++..||........
T Consensus 193 f~~~~f~~~~tvp~ 206 (227)
T KOG1271|consen 193 FENFNFEYLSTVPT 206 (227)
T ss_pred HhcCCeEEEEeecc
Confidence 99999987765443
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.3e-16 Score=138.55 Aligned_cols=152 Identities=18% Similarity=0.293 Sum_probs=110.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+..+|||||||+|.++..+++.+ |+.+++++|. +.+++.+++++...+ .+++++.+|+.+. +++ .+|+|
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~--p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~----~~~--~~D~v 219 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF--PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE----SYP--EADAV 219 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC--CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC----CCC--CCCEE
Confidence 46799999999999999999987 7889999998 789999988876533 5799999998742 222 36999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhH--hhhcCccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL--RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
++..++|+++++....++++++++|+|||++++.++...+.... ........... .......+.+.+++.++++
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~~~ll~ 295 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAG----MPFSVLGFKEQARYKEILE 295 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcc----cccccccCCCHHHHHHHHH
Confidence 99999998877777899999999999999999987633211110 00000000000 0001112345799999999
Q ss_pred hCCCceEEe
Q psy11741 263 SAGFVEKQN 271 (352)
Q Consensus 263 ~~Gf~~~~~ 271 (352)
++||+.+..
T Consensus 296 ~aGf~~v~~ 304 (306)
T TIGR02716 296 SLGYKDVTM 304 (306)
T ss_pred HcCCCeeEe
Confidence 999998764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=144.78 Aligned_cols=145 Identities=17% Similarity=0.257 Sum_probs=111.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||||||+|.++..+++. ..+|+|+|+|+.|++.+++... ...++.++++|+... .+++++++||+|++.
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~----~~~v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~~~~--~~~~~~~~fD~I~~~ 110 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK----AGQVIALDFIESVIKKNESING-HYKNVKFMCADVTSP--DLNISDGSVDLIFSN 110 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHhc-cCCceEEEEeccccc--ccCCCCCCEEEEehh
Confidence 679999999999999999984 4589999999999998865432 235789999998643 345667899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|+++++...+++++.++|||||++++.+....... .... ......+.....+..++.++||.
T Consensus 111 ~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~f~~~~~~ 176 (475)
T PLN02336 111 WLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSG------------DSKR--KNNPTHYREPRFYTKVFKECHTR 176 (475)
T ss_pred hhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCC------------cccc--cCCCCeecChHHHHHHHHHheec
Confidence 999999777789999999999999999999765321100 0000 11122335678999999999998
Q ss_pred eEEeee
Q psy11741 268 EKQNLI 273 (352)
Q Consensus 268 ~~~~~~ 273 (352)
......
T Consensus 177 ~~~~~~ 182 (475)
T PLN02336 177 DEDGNS 182 (475)
T ss_pred cCCCCE
Confidence 876543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-15 Score=125.34 Aligned_cols=153 Identities=15% Similarity=0.193 Sum_probs=104.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++.. .+..++|+|+|+.+++.++++ ++.++++|+.+.. .++++++||+|+++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~---~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~l--~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDE---KQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEGL--EAFPDKSFDYVILS 82 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhc---cCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhcc--cccCCCCcCEEEEh
Confidence 679999999999999888764 445789999999999998753 3678888886421 12557899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchh-hHh-hhcCccccCc--eeecCCCeeeeccCHHHHHHHHHh
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV-QLR-FKKGRCLQDN--FYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
.+++|+ .++..+++++.+.+++ +++..++..... ... ...+...... .+...+..+..+++.+++.+++++
T Consensus 83 ~~l~~~--~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~ 157 (194)
T TIGR02081 83 QTLQAT--RNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGE 157 (194)
T ss_pred hHhHcC--cCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHH
Confidence 999999 6788899988887654 344333321111 001 1111110000 011122334568899999999999
Q ss_pred CCCceEEeeeeee
Q psy11741 264 AGFVEKQNLIDRR 276 (352)
Q Consensus 264 ~Gf~~~~~~~~~~ 276 (352)
+||+++.......
T Consensus 158 ~Gf~v~~~~~~~~ 170 (194)
T TIGR02081 158 LNLRILDRAAFDV 170 (194)
T ss_pred CCCEEEEEEEecc
Confidence 9999998765433
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-15 Score=137.39 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=107.4
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||||||+|.++..+++. .+.+|+|+|+|+.+++.|+++... .++++...|+.. + +++||.|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~---~g~~V~giDlS~~~l~~A~~~~~~--l~v~~~~~D~~~----l---~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEH---YGVSVVGVTISAEQQKLAQERCAG--LPVEIRLQDYRD----L---NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHhcc--CeEEEEECchhh----c---CCCCCEEE
Confidence 45789999999999999999875 456999999999999999988742 357788888753 2 46899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+++|++..++..+++++.++|||||.+++.+++...... .....+. .+..+. ....+.+++...++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~---~~~~~i~--~yifp~---g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT---NVDPWIN--KYIFPN---GCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC---CCCCCce--eeecCC---CcCCCHHHHHHHHH-CC
Confidence 999999997778889999999999999999998765432110 0001111 111111 13457788887766 58
Q ss_pred CceEEe
Q psy11741 266 FVEKQN 271 (352)
Q Consensus 266 f~~~~~ 271 (352)
|.+.+.
T Consensus 305 ~~v~d~ 310 (383)
T PRK11705 305 FVMEDW 310 (383)
T ss_pred cEEEEE
Confidence 887665
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-15 Score=123.19 Aligned_cols=126 Identities=17% Similarity=0.245 Sum_probs=99.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++.. +.+++|+|+|+.|++.++++....+.++.+..+|+.+. ..++||+|+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~------~~~~fD~Vi~n 89 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGK----GKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG------VRGKFDVILFN 89 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhc----CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc------cCCcccEEEEC
Confidence 678999999999999999884 33899999999999999998776556788888987642 14589999998
Q ss_pred hhhhccChh-------------------HHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCee
Q psy11741 188 FVLDAINPN-------------------KMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL 248 (352)
Q Consensus 188 ~~l~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
..+++.+.. ....+++++.++|+|||.+++.....
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~-------------------------- 143 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL-------------------------- 143 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc--------------------------
Confidence 766555211 14678999999999999999875331
Q ss_pred eeccCHHHHHHHHHhCCCceEEee
Q psy11741 249 VYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 249 ~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
.+..++...+++.||......
T Consensus 144 ---~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 144 ---NGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred ---CChHHHHHHHHhCCCeEEEEE
Confidence 236678899999999887663
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=122.59 Aligned_cols=103 Identities=20% Similarity=0.358 Sum_probs=84.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
-.++||+|||.|.++..|+.++ -+++++|+|+.+++.|+++.... ++|.+.+.|+.+. .++++||+|+++
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC----d~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~-----~P~~~FDLIV~S 113 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC----DRLLAVDISPRALARARERLAGL-PHVEWIQADVPEF-----WPEGRFDLIVLS 113 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE----EEEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT--------SS-EEEEEEE
T ss_pred cceeEecCCCccHHHHHHHHhh----CceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCCC-----CCCCCeeEEEEe
Confidence 5689999999999999999965 48999999999999999998754 6899999999752 357899999999
Q ss_pred hhhhccCh-hHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 188 FVLDAINP-NKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 188 ~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.+++++++ +++..++..+...|+|||.|++...
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99999964 6899999999999999999999765
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=123.35 Aligned_cols=98 Identities=17% Similarity=0.228 Sum_probs=80.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|..+..++... ++.+|+|+|+|+.|++.++++.+..+ .+++++++|+.+. + ..++||+|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~--~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~----~-~~~~fD~I~s 115 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR--PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF----Q-HEEQFDVITS 115 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC--CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc----c-ccCCccEEEe
Confidence 7899999999999999988754 66789999999999999988876543 4699999998742 2 2578999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.. ++ ++..+++.+.++|+|||.+++.
T Consensus 116 ~~-~~-----~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 116 RA-LA-----SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hh-hh-----CHHHHHHHHHHhcCCCCEEEEE
Confidence 75 33 3456788889999999999986
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-14 Score=123.60 Aligned_cols=142 Identities=16% Similarity=0.163 Sum_probs=108.3
Q ss_pred hhhhHHHHhhhcccccccc--hhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCC
Q psy11741 65 VAKNWDAFYNVHQNRFFKD--RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFS 142 (352)
Q Consensus 65 ~~~yw~~~y~~~~~~f~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s 142 (352)
..++|++.|..+...|... ...+...+..+.. .++.+||..|||.|..+..|+. .|.+|+|+|+|
T Consensus 8 ~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~---------~~~~rvLvPgCGkg~D~~~LA~----~G~~V~GvDlS 74 (226)
T PRK13256 8 NNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNI---------NDSSVCLIPMCGCSIDMLFFLS----KGVKVIGIELS 74 (226)
T ss_pred CHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCC---------CCCCeEEEeCCCChHHHHHHHh----CCCcEEEEecC
Confidence 3458998888877777443 2233344443322 1367999999999999999999 88999999999
Q ss_pred HHHHHHHHhcc-------------ccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhc
Q psy11741 143 ENAVNILKEHE-------------EYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYL 209 (352)
Q Consensus 143 ~~~l~~a~~~~-------------~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~L 209 (352)
+.+++.+.+.. ...+.++++.++|+.+... .+-..+.||+|+-..++++++++...+..+.+.++|
T Consensus 75 ~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~-~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL 153 (226)
T PRK13256 75 EKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK-IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVC 153 (226)
T ss_pred HHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc-cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHh
Confidence 99999985521 1124579999999985321 011236899999999999999999999999999999
Q ss_pred CCCEEEEEEeC
Q psy11741 210 KPGGMVLFRDY 220 (352)
Q Consensus 210 kpgG~l~~~~~ 220 (352)
+|||.+++..+
T Consensus 154 ~pgg~llll~~ 164 (226)
T PRK13256 154 SNNTQILLLVM 164 (226)
T ss_pred CCCcEEEEEEE
Confidence 99999888754
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=118.34 Aligned_cols=147 Identities=18% Similarity=0.328 Sum_probs=111.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||.|.+...|.+. .+...+|+|+++..+..|.++- +.++++|+.+.. ..+++++||.|+++
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~---k~v~g~GvEid~~~v~~cv~rG------v~Viq~Dld~gL--~~f~d~sFD~VIls 82 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE---KQVDGYGVEIDPDNVAACVARG------VSVIQGDLDEGL--ADFPDQSFDYVILS 82 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh---cCCeEEEEecCHHHHHHHHHcC------CCEEECCHHHhH--hhCCCCCccEEehH
Confidence 889999999999999888875 7789999999999999887763 678999998632 13779999999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchh-hHhhh-cCc-----cccCceeecCCCeeeeccCHHHHHHH
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV-QLRFK-KGR-----CLQDNFYARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (352)
.+++++ .++..+|+++.|+ |...+++.++..... ...+. .|. .+...|| +.+..++.|..+++++
T Consensus 83 qtLQ~~--~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WY---dTPNih~~Ti~DFe~l 154 (193)
T PF07021_consen 83 QTLQAV--RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWY---DTPNIHLCTIKDFEDL 154 (193)
T ss_pred hHHHhH--hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCccc---CCCCcccccHHHHHHH
Confidence 999999 8889999998776 556666655442211 11121 222 2233333 3445568999999999
Q ss_pred HHhCCCceEEeee
Q psy11741 261 FESAGFVEKQNLI 273 (352)
Q Consensus 261 l~~~Gf~~~~~~~ 273 (352)
+++.|+.+.+...
T Consensus 155 c~~~~i~I~~~~~ 167 (193)
T PF07021_consen 155 CRELGIRIEERVF 167 (193)
T ss_pred HHHCCCEEEEEEE
Confidence 9999999987644
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=128.70 Aligned_cols=109 Identities=21% Similarity=0.198 Sum_probs=85.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecC-CCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDV-TSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~-~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|..+..+++.. ++.+++|+|+|+.|++.|+++....+ .++.++++|+ ... ...+++++||+|+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~--p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l--~~~~~~~~~D~V~ 116 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKAN--PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL--LDMFPDGSLDRIY 116 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHC--CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH--HHHcCccccceEE
Confidence 7799999999999999998876 67799999999999999998876533 5799999998 421 1114578899999
Q ss_pred ehhhhhccC------hhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 186 LIFVLDAIN------PNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 186 ~~~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+.+...+.. ......+++++.++|+|||.+++...
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 876543221 11257789999999999999999754
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=121.52 Aligned_cols=123 Identities=15% Similarity=0.210 Sum_probs=96.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.|+++....+ .++++..+|+.. ++ .++||+|+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-----~~-~~~~D~v~ 102 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF--PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-----EL-PGKADAIF 102 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-----hc-CcCCCEEE
Confidence 37899999999999999999875 67899999999999999998875432 468888888642 12 35799999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+....++ +..+++.+.++|+|||++++..... .+..++..++++.|
T Consensus 103 ~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g 148 (187)
T PRK08287 103 IGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAHLEKCG 148 (187)
T ss_pred ECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHHHHHCC
Confidence 8765433 4567899999999999998864321 23567888999999
Q ss_pred CceEEe
Q psy11741 266 FVEKQN 271 (352)
Q Consensus 266 f~~~~~ 271 (352)
|..++.
T Consensus 149 ~~~~~~ 154 (187)
T PRK08287 149 VSELDC 154 (187)
T ss_pred CCcceE
Confidence 987665
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=122.76 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=95.3
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||+|||+|.++..+++.. +..+|+|+|+++.|++.+.+++... .++.++.+|+.......++ .++||+|+
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v--~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l-~~~~D~i~ 146 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIV--EEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHV-VEKVDVIY 146 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhc-cccCCEEE
Confidence 347899999999999999999976 3458999999999999877665433 5789999998742111222 35699998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+... .+.....+++++.++|||||.+++...... . .. ..... . . .++..++++++|
T Consensus 147 ~d~~----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~----~--------d~-----~~~~~-~-~-~~~~~~~l~~aG 202 (226)
T PRK04266 147 QDVA----QPNQAEIAIDNAEFFLKDGGYLLLAIKARS----I--------DV-----TKDPK-E-I-FKEEIRKLEEGG 202 (226)
T ss_pred ECCC----ChhHHHHHHHHHHHhcCCCcEEEEEEeccc----c--------cC-----cCCHH-H-H-HHHHHHHHHHcC
Confidence 5321 223345678999999999999999533210 0 00 00000 0 1 134559999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|+.+...
T Consensus 203 F~~i~~~ 209 (226)
T PRK04266 203 FEILEVV 209 (226)
T ss_pred CeEEEEE
Confidence 9998764
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=123.24 Aligned_cols=174 Identities=22% Similarity=0.301 Sum_probs=118.0
Q ss_pred hhhhHHHHhhhcccccccch--hhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCC
Q psy11741 65 VAKNWDAFYNVHQNRFFKDR--HWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFS 142 (352)
Q Consensus 65 ~~~yw~~~y~~~~~~f~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s 142 (352)
..++|++.|..+...|.... ..+...+..+. ..++.+||..|||.|..+..|++ .|.+|+|+|+|
T Consensus 2 ~~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~---------~~~~~rvLvPgCG~g~D~~~La~----~G~~VvGvDls 68 (218)
T PF05724_consen 2 DPEFWEERWQEGQTPWDQGEPNPALVEYLDSLA---------LKPGGRVLVPGCGKGYDMLWLAE----QGHDVVGVDLS 68 (218)
T ss_dssp HHHHHHHHHHTT--TT--TTSTHHHHHHHHHHT---------TSTSEEEEETTTTTSCHHHHHHH----TTEEEEEEES-
T ss_pred CHHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcC---------CCCCCeEEEeCCCChHHHHHHHH----CCCeEEEEecC
Confidence 35789999988887776542 33444444321 22367999999999999999999 88999999999
Q ss_pred HHHHHHHHh-ccc------------cCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhc
Q psy11741 143 ENAVNILKE-HEE------------YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYL 209 (352)
Q Consensus 143 ~~~l~~a~~-~~~------------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~L 209 (352)
+.+++.+.+ +.. ....+|++.++|+.+.. +...++||+|+=..+++.++++...+..+.+.++|
T Consensus 69 ~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~---~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll 145 (218)
T PF05724_consen 69 PTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP---PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLL 145 (218)
T ss_dssp HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG---GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCE
T ss_pred HHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC---hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 999999832 211 01246889999998521 11235899999999999999999999999999999
Q ss_pred CCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 210 KPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 210 kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
+|||.+++.+...+. . ...| ..+..+.+++.+++. .+|++.....
T Consensus 146 ~p~g~~lLi~l~~~~--------~---------~~~G-PPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 146 KPGGRGLLITLEYPQ--------G---------EMEG-PPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp EEEEEEEEEEEES-C--------S---------CSSS-SS----HHHHHHHHT-TTEEEEEEEE
T ss_pred CCCCcEEEEEEEcCC--------c---------CCCC-cCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 999995444322110 0 0111 112368899999998 8998887755
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-14 Score=130.38 Aligned_cols=131 Identities=17% Similarity=0.226 Sum_probs=98.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++... ++.+++|+|+|+.|++.|+++....+.++.++++|+.+.. .+ ..++||+|+|+
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~--p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~--l~-~~~~FDLIVSN 326 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALER--PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD--MP-SEGKWDIIVSN 326 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc--cc-cCCCccEEEEC
Confidence 5699999999999999998765 7789999999999999999998766668999999986431 11 24579999994
Q ss_pred hhhh-----cc------------------ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecC
Q psy11741 188 FVLD-----AI------------------NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARG 244 (352)
Q Consensus 188 ~~l~-----~~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
--.. .. ..+....+++.+.++|+|||.+++.. +.
T Consensus 327 PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G~---------------------- 383 (423)
T PRK14966 327 PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-GF---------------------- 383 (423)
T ss_pred CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-Cc----------------------
Confidence 3110 00 01235577888889999999988742 21
Q ss_pred CCeeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 245 DGTLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 245 ~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
...+.+.+++++.||..+....
T Consensus 384 -------~Q~e~V~~ll~~~Gf~~v~v~k 405 (423)
T PRK14966 384 -------DQGAAVRGVLAENGFSGVETLP 405 (423)
T ss_pred -------cHHHHHHHHHHHCCCcEEEEEE
Confidence 2366788999999998776643
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=119.61 Aligned_cols=151 Identities=14% Similarity=0.208 Sum_probs=103.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+..+.||+|+|.|+.+..++... --+|-.+|+.+..++.|++.... ...-..+.+..+.+. ....++||+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~---f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f----~P~~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV---FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF----TPEEGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC----SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--------TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHh---cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc----cCCCCcEeEEE
Confidence 36789999999999998876632 23899999999999999976654 223356777777642 22357999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+-+++.|++++++..+|+++...|+|+|++++-+..... + ...+...+.+. ..+.+.+..+|++||
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~--------~----~~~~D~~DsSv--TRs~~~~~~lF~~AG 193 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS--------G----FDEFDEEDSSV--TRSDEHFRELFKQAG 193 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS--------S----EEEEETTTTEE--EEEHHHHHHHHHHCT
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC--------C----CcccCCccCee--ecCHHHHHHHHHHcC
Confidence 999999999999999999999999999999997643211 0 11233334333 357889999999999
Q ss_pred CceEEeeeeeeee
Q psy11741 266 FVEKQNLIDRRLQ 278 (352)
Q Consensus 266 f~~~~~~~~~~~~ 278 (352)
+.++.......++
T Consensus 194 l~~v~~~~Q~~fP 206 (218)
T PF05891_consen 194 LRLVKEEKQKGFP 206 (218)
T ss_dssp -EEEEEEE-TT--
T ss_pred CEEEEeccccCCC
Confidence 9999887654333
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-14 Score=111.21 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=82.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..+++.. ++.+|+|+|+|+.+++.++++....+ .++.++..|+... ++...++||.|++
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~v~~ 94 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV--PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA---LEDSLPEPDRVFI 94 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC--CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc---ChhhcCCCCEEEE
Confidence 6799999999999999999876 56799999999999999998866532 4688888887531 2222468999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.... .....+++.+.+.|+|||.+++..+
T Consensus 95 ~~~~-----~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 95 GGSG-----GLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCcc-----hhHHHHHHHHHHHcCCCCEEEEEec
Confidence 6543 3446899999999999999998643
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=118.11 Aligned_cols=129 Identities=21% Similarity=0.310 Sum_probs=93.3
Q ss_pred EEEeCCHHHHHHHHhccccC----CCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCC
Q psy11741 137 YGCDFSENAVNILKEHEEYK----PDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPG 212 (352)
Q Consensus 137 ~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 212 (352)
+|+|+|+.|++.|+++.... ..+++++++|+. .+|+++++||+|++.++++++ .++..++++++++||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~----~lp~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAI----DLPFDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechh----hCCCCCCCeeEEEecchhhcC--CCHHHHHHHHHHHcCcC
Confidence 48999999999998765421 246999999997 567778899999999999999 78899999999999999
Q ss_pred EEEEEEeCCCCchhhHhhh-----cCccc-cCce------eecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 213 GMVLFRDYGRYDLVQLRFK-----KGRCL-QDNF------YARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 213 G~l~~~~~~~~~~~~~~~~-----~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
|.+++.++..+........ ..... .... |.....+...+.+.+++.++++++||+.+..
T Consensus 75 G~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~ 145 (160)
T PLN02232 75 SRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACH 145 (160)
T ss_pred eEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceE
Confidence 9999998876543211100 00000 0000 0000111134689999999999999998865
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=122.91 Aligned_cols=104 Identities=23% Similarity=0.358 Sum_probs=82.0
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+|||+|||+|.++..++... ++.+|+|+|+|+.+++.|++++...+ .++.++++|+.+. ++.++||+|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~--~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-----~~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF--PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-----LAGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-----CcCCCccEEEE
Confidence 689999999999999999876 67899999999999999999977543 3489999998642 22348999998
Q ss_pred h-------------hhhhccC----------hhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 I-------------FVLDAIN----------PNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~-------------~~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+ .+..|-+ ......++..+.++|+|||++++..
T Consensus 189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 4 1112111 1256788999999999999998853
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-14 Score=117.88 Aligned_cols=124 Identities=20% Similarity=0.263 Sum_probs=95.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..++.... ++.+|+++|+++.+++.|+++....+ .++.++.+|+.+. ++...++||.|
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~-~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~---l~~~~~~~D~V 115 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVG-ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI---LFTINEKFDRI 115 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh---HhhcCCCCCEE
Confidence 478999999999999999887643 45689999999999999998876543 5788888888642 22224689999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++... ..++..+++.+.++|+|||.+++..... -+..++...+++.
T Consensus 116 ~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~l~~~ 161 (198)
T PRK00377 116 FIGGG-----SEKLKEIISASWEIIKKGGRIVIDAILL-----------------------------ETVNNALSALENI 161 (198)
T ss_pred EECCC-----cccHHHHHHHHHHHcCCCcEEEEEeecH-----------------------------HHHHHHHHHHHHc
Confidence 98532 2466789999999999999998853321 2356788888999
Q ss_pred CCce
Q psy11741 265 GFVE 268 (352)
Q Consensus 265 Gf~~ 268 (352)
||..
T Consensus 162 g~~~ 165 (198)
T PRK00377 162 GFNL 165 (198)
T ss_pred CCCe
Confidence 9844
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-14 Score=124.10 Aligned_cols=107 Identities=17% Similarity=0.235 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCccccHHHH-HhhcCCCCeEEEEEeCCHHHHHHHHhcccc---CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPI-VEHCKNDNVFVYGCDFSENAVNILKEHEEY---KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l-~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
++.+|+|||||.|.++..+ ++... ++.+++|+|+++.+++.|++.+.. ...+++|.++|+.+. ....+.||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~-p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~----~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHL-PTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV----TESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc----ccccCCcC
Confidence 4789999999988554443 32222 778999999999999999998843 236799999999752 11246899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|++. ++++++.++...+++++++.|+|||.+++..
T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99999 8888877899999999999999999999975
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=113.97 Aligned_cols=105 Identities=20% Similarity=0.360 Sum_probs=84.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCc-eEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDR-CHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++...+.. +.++..|..+. .++++||+|++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~--~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-----~~~~~fD~Iv~ 104 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRG--PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-----LPDGKFDLIVS 104 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTS--TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-----CCTTCEEEEEE
T ss_pred CCeEEEecCChHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-----ccccceeEEEE
Confidence 7899999999999999999976 7778999999999999999998875533 89999998752 23689999999
Q ss_pred hhhhhccC---hhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAIN---PNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~---~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+--++.-. ..-...+++.+.++|+|||.+++..
T Consensus 105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 105 NPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp ---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 76544331 1346789999999999999997753
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-13 Score=120.68 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=94.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..++... ++.+++|+|+|+.+++.|++++...+ .++.++++|+.+. +++++||+|+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~--~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-----~~~~~fD~Iv 194 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF--PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-----LPGRKYDLIV 194 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-----cCCCCccEEE
Confidence 5789999999999999999876 67899999999999999999987543 4689999998642 2356899999
Q ss_pred ehh------hhhccC-----------------hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceee
Q psy11741 186 LIF------VLDAIN-----------------PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242 (352)
Q Consensus 186 ~~~------~l~~~~-----------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
++- .+.++. .+....+++.+.++|+|||++++...
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g---------------------- 252 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG---------------------- 252 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC----------------------
Confidence 851 111110 12346788999999999999998532
Q ss_pred cCCCeeeeccCHHHHHHHHHhCCCceEE
Q psy11741 243 RGDGTLVYFFTREEVKTMFESAGFVEKQ 270 (352)
Q Consensus 243 ~~~~~~~~~~~~~~~~~ll~~~Gf~~~~ 270 (352)
.+.+.+.+++.+.||.-..
T Consensus 253 ---------~~~~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 253 ---------NSMEALEEAYPDVPFTWLE 271 (284)
T ss_pred ---------cCHHHHHHHHHhCCCceee
Confidence 1235677888888876543
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-14 Score=124.61 Aligned_cols=101 Identities=25% Similarity=0.444 Sum_probs=81.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCC-CeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKND-NVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+|||+|||+|.++..+++.+... +..++|+|+|+.|++.|+++. +++.+.++|+. .+|+++++||+|++
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~----~lp~~~~sfD~I~~ 157 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSH----RLPFADQSLDAIIR 157 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecc----cCCCcCCceeEEEE
Confidence 5789999999999999998865311 347999999999999998764 45889999987 56677889999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCch
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 225 (352)
.+.- ..++++.++|||||++++..++....
T Consensus 158 ~~~~---------~~~~e~~rvLkpgG~li~~~p~~~~l 187 (272)
T PRK11088 158 IYAP---------CKAEELARVVKPGGIVITVTPGPRHL 187 (272)
T ss_pred ecCC---------CCHHHHHhhccCCCEEEEEeCCCcch
Confidence 6431 23578999999999999987766543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-14 Score=117.80 Aligned_cols=139 Identities=19% Similarity=0.281 Sum_probs=100.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
-.++||+|||||..+..|... ..+++|+|+|+.|+++|.++-.. -++.+.|+.... ....+.+||+|.+.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~----a~~ltGvDiS~nMl~kA~eKg~Y----D~L~~Aea~~Fl--~~~~~er~DLi~Aa 195 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM----ADRLTGVDISENMLAKAHEKGLY----DTLYVAEAVLFL--EDLTQERFDLIVAA 195 (287)
T ss_pred cceeeecccCcCcccHhHHHH----HhhccCCchhHHHHHHHHhccch----HHHHHHHHHHHh--hhccCCcccchhhh
Confidence 568999999999998888763 34799999999999999887432 133444443211 11236789999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.|+.++ .++..++..+..+|+|||.|.++.-...+... +..+ ++..+-.+..-++..++..||.
T Consensus 196 DVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-------------f~l~-ps~RyAH~~~YVr~~l~~~Gl~ 259 (287)
T COG4976 196 DVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-------------FVLG-PSQRYAHSESYVRALLAASGLE 259 (287)
T ss_pred hHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCC-------------eecc-hhhhhccchHHHHHHHHhcCce
Confidence 999999 88999999999999999999997543221110 1100 1111224566789999999999
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
++...
T Consensus 260 ~i~~~ 264 (287)
T COG4976 260 VIAIE 264 (287)
T ss_pred EEEee
Confidence 99874
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-13 Score=119.86 Aligned_cols=128 Identities=20% Similarity=0.355 Sum_probs=97.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc-cCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-YKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..++... +..+++|+|+|+.+++.|+++.. ....++.++.+|+... ..+++||+|+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~--~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-----~~~~~fD~Iv 180 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER--PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-----LPGGRFDLIV 180 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-----CCCCceeEEE
Confidence 46799999999999999999876 67899999999999999999876 3346799999998642 2257899999
Q ss_pred ehhh------hhcc------------------ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCcee
Q psy11741 186 LIFV------LDAI------------------NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFY 241 (352)
Q Consensus 186 ~~~~------l~~~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
++-- ++.+ ..+....+++++.++|+|||++++.. +.
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~------------------- 240 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GY------------------- 240 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-Cc-------------------
Confidence 8421 1101 01345678899999999999999852 11
Q ss_pred ecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 242 ARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
...+.+..++++.||..+..
T Consensus 241 ----------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 ----------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred ----------hHHHHHHHHHHhCCCceeEE
Confidence 23456888999999986655
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-14 Score=119.37 Aligned_cols=111 Identities=21% Similarity=0.266 Sum_probs=85.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+|||||||+|.++..++... +..+++|+|+++.|++.|+++.... ..++.++++|+.+.. ...++++++|.|++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~--p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN--PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-DKFFPDGSLSKVFL 93 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC--CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH-HhhCCCCceeEEEE
Confidence 5689999999999999999876 7889999999999999998876553 258999999987421 11134568999998
Q ss_pred hhhhhccChh------HHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAINPN------KMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+...+.... ....++++++++|||||.|++.+..
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 7644332110 1257899999999999999987533
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=119.69 Aligned_cols=129 Identities=21% Similarity=0.373 Sum_probs=98.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++... ++.+++|+|+|+.+++.|+++....+ .++.+..+|+.+. +++++||+|++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~fD~Vi~ 160 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER--PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-----LPGGKFDLIVS 160 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc-----CcCCceeEEEE
Confidence 5689999999999999999876 67799999999999999998876533 3689999998642 34678999998
Q ss_pred hhh------hhccCh------------------hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceee
Q psy11741 187 IFV------LDAINP------------------NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242 (352)
Q Consensus 187 ~~~------l~~~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
+-. .+.+.. .....+++.+.++|+|||.+++...
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------------- 218 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------------- 218 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------
Confidence 422 111111 1235788999999999999998521
Q ss_pred cCCCeeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 243 RGDGTLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 243 ~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
+...+++.++++++||..+....
T Consensus 219 --------~~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 219 --------YDQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred --------ccHHHHHHHHHHhCCCCceEEEe
Confidence 13356789999999998877644
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.6e-13 Score=107.60 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=100.7
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+++|||||||..+..++... +..+++++|-++++++..++|+... .+|+..+.+|+-+. ++- ..++|.|
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~--p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~---L~~-~~~~dai 106 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAG--PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA---LPD-LPSPDAI 106 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh---hcC-CCCCCEE
Confidence 348899999999999999999544 8889999999999999999998763 48899999998753 221 1279999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+.... .....+|+.+...|||||++++..... -+.....+.+++.
T Consensus 107 FIGGg------~~i~~ile~~~~~l~~ggrlV~naitl-----------------------------E~~~~a~~~~~~~ 151 (187)
T COG2242 107 FIGGG------GNIEEILEAAWERLKPGGRLVANAITL-----------------------------ETLAKALEALEQL 151 (187)
T ss_pred EECCC------CCHHHHHHHHHHHcCcCCeEEEEeecH-----------------------------HHHHHHHHHHHHc
Confidence 98765 355788999999999999999975432 2345567788999
Q ss_pred CC-ceEEeee
Q psy11741 265 GF-VEKQNLI 273 (352)
Q Consensus 265 Gf-~~~~~~~ 273 (352)
|+ +++++..
T Consensus 152 g~~ei~~v~i 161 (187)
T COG2242 152 GGREIVQVQI 161 (187)
T ss_pred CCceEEEEEe
Confidence 99 5555543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-13 Score=129.93 Aligned_cols=129 Identities=19% Similarity=0.291 Sum_probs=96.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..++... ++.+|+|+|+|+.+++.|++++...+ .++.++.+|+.+. .+.++||+|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~--p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-----~~~~~fDlIv 211 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL--PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-----IEKQKFDFIV 211 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-----CcCCCccEEE
Confidence 4689999999999999998876 77899999999999999999976543 4688999997641 2356899999
Q ss_pred ehh--------------hhhc-----c-----ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCcee
Q psy11741 186 LIF--------------VLDA-----I-----NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFY 241 (352)
Q Consensus 186 ~~~--------------~l~~-----~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
++- +..| + ..+....+++.+.++|+|||.+++. .+.
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~------------------- 271 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF------------------- 271 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC-------------------
Confidence 832 1111 0 0123556788899999999999885 321
Q ss_pred ecCCCeeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 242 ARGDGTLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
-..+.+.+++.+.||..+....
T Consensus 272 ----------~q~~~v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 272 ----------KQEEAVTQIFLDHGYNIESVYK 293 (506)
T ss_pred ----------chHHHHHHHHHhcCCCceEEEe
Confidence 2456788888899998776543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-13 Score=112.79 Aligned_cols=126 Identities=22% Similarity=0.350 Sum_probs=95.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC-c--eEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD-R--CHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~--v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||+|||+|.++..++. .+.+++|+|+|+.+++.++++....+. + +.++.+|+.+. +.+++||+|
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~d~v 94 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAK----NGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-----FRGDKFDVI 94 (188)
T ss_pred CCEEEEEccccCHHHHHHHh----hcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-----ccccCceEE
Confidence 67999999999999999988 467999999999999999888765332 2 78888887642 234589999
Q ss_pred Eehhhhhcc-------------------ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCC
Q psy11741 185 LLIFVLDAI-------------------NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGD 245 (352)
Q Consensus 185 ~~~~~l~~~-------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (352)
+++..+... +...+..+++++.++|+|||.+++....
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------------ 150 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------------ 150 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc------------------------
Confidence 986433221 1234567899999999999998886422
Q ss_pred CeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 246 GTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 246 ~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
....+++..+++++||.+...
T Consensus 151 -----~~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 151 -----LTGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred -----cCCHHHHHHHHHHCCCeeeee
Confidence 134567889999999987754
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-13 Score=117.47 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||+|||+|.++..++.... +...|+++|+|+.|++.....+.. ..|+.++..|+.... ......++||+|+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG-~~G~VyAVD~s~r~~~dLl~~ak~-r~NI~~I~~Da~~p~-~y~~~~~~vDvV~ 207 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVG-PEGVVYAVEFSHRSGRDLTNMAKK-RPNIVPIIEDARYPQ-KYRMLVPMVDVIF 207 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhC-CCCEEEEEECcHHHHHHHHHHhhh-cCCCEEEECCccChh-hhhcccCCCCEEE
Confidence 4578999999999999999999875 345899999999765444333221 257899999987431 1222245899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+... .+++...++.++.++|||||.|++.
T Consensus 208 ~Dva----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 208 ADVA----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EeCC----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 8663 2356667778899999999999994
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=116.24 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|..+..+++... ++.+|+++|+++.+++.|++++...+ .++++..+|+.+. ++ ..++||+|
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~-~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~---~~-~~~~fD~I 146 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIE-RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG---LE-KHAPFDAI 146 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC---Cc-cCCCccEE
Confidence 478999999999999998888763 34589999999999999998876543 3589999998742 22 24689999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++..++++++ .++.+.|+|||+|++..
T Consensus 147 i~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 147 IVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 9988877662 35778999999998853
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-13 Score=110.69 Aligned_cols=104 Identities=25% Similarity=0.404 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+.-|||||||+|..+..+.. +|..++|+|+|+.|++.|.+..-. -.+..+|+-+ .+|+.+++||.||+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~----~Gh~wiGvDiSpsML~~a~~~e~e----gdlil~DMG~---GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSD----SGHQWIGVDISPSMLEQAVERELE----GDLILCDMGE---GLPFRPGTFDGVIS 118 (270)
T ss_pred CCcEEEEeccCCCcchheecc----CCceEEeecCCHHHHHHHHHhhhh----cCeeeeecCC---CCCCCCCccceEEE
Confidence 367899999999999888877 889999999999999999873211 3577888874 78899999999999
Q ss_pred hhhhhcc---------ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAI---------NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
...++++ +...+..++..++.+|++|+..++..+.
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred eeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 7766555 1234556788899999999999997543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-13 Score=122.29 Aligned_cols=113 Identities=21% Similarity=0.317 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--------C---CCceEEEEecCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--------K---PDRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--------~---~~~v~~~~~d~~~~~~~~~ 175 (352)
++.+|||+|||-|..+.-+... .-..++|+|+|...|+.|+++... . .-...++.+|.........
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~---~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA---KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhHHHHHhc---CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence 5889999999999988877774 445899999999999999998721 0 1245677787764322112
Q ss_pred CCC--CcceEEEehhhhhcc--ChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 176 FAP--ESLDIVLLIFVLDAI--NPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 176 ~~~--~~fD~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
+.+ ..||+|-|-+++|+. +.+....+|+.+.+.|+|||+|+.+.+..
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 233 599999999999988 67778889999999999999999987654
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-13 Score=117.36 Aligned_cols=119 Identities=22% Similarity=0.354 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++. ...+|+|+|+|+.+++.|+++....+..... .+. ..+.+||+|++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~---g~~~v~giDis~~~l~~A~~n~~~~~~~~~~---~~~-------~~~~~fD~Vva 185 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKL---GAKKVLAVDIDPQAVEAARENAELNGVELNV---YLP-------QGDLKADVIVA 185 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHHcCCCceE---EEc-------cCCCCcCEEEE
Confidence 4789999999999988877663 2236999999999999999987654321011 111 11227999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
+... +....++.++.++|||||++++..+.. ...+++...+++.||
T Consensus 186 ni~~-----~~~~~l~~~~~~~LkpgG~lilsgi~~-----------------------------~~~~~v~~~l~~~Gf 231 (250)
T PRK00517 186 NILA-----NPLLELAPDLARLLKPGGRLILSGILE-----------------------------EQADEVLEAYEEAGF 231 (250)
T ss_pred cCcH-----HHHHHHHHHHHHhcCCCcEEEEEECcH-----------------------------hhHHHHHHHHHHCCC
Confidence 6432 345678899999999999999975432 235678889999999
Q ss_pred ceEEee
Q psy11741 267 VEKQNL 272 (352)
Q Consensus 267 ~~~~~~ 272 (352)
.++...
T Consensus 232 ~~~~~~ 237 (250)
T PRK00517 232 TLDEVL 237 (250)
T ss_pred EEEEEE
Confidence 988653
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=122.77 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=86.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|||+|||+|.++..+++.. ++.+|+++|+|+.|++.|++++...+....+...|+... ..++||+|+++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~--p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~------~~~~fDlIvsN 268 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHS--PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD------IKGRFDMIISN 268 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc------cCCCccEEEEC
Confidence 4689999999999999999876 677999999999999999998876555566777776531 25789999998
Q ss_pred hhhhcc---ChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 188 FVLDAI---NPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 188 ~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
..+|.. +......+++.+.++|+|||.|++..
T Consensus 269 PPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 269 PPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 877753 23567899999999999999998864
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-13 Score=123.24 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=84.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+.+|||+|||+|.++..+++.. |..+|+++|+|+.|++.|+++++... .++++...|+... .++++||+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~--P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-----~~~~~fDl 301 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKN--PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-----VEPFRFNA 301 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-----CCCCCEEE
Confidence 4699999999999999999876 78899999999999999999875432 3678888887542 23468999
Q ss_pred EEehhhhhc---cChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDA---INPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+|+-.+|. ++......+++.+.++|+|||.|++..
T Consensus 302 IlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 302 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 999765543 233455789999999999999999973
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=112.74 Aligned_cols=127 Identities=16% Similarity=0.120 Sum_probs=93.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++.. ...+++|+|+|+.+++.+++++...+.++.+..+|+... +++++||+|+++
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~---~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-----~~~~~fD~Vi~n 108 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA---GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-----VEFRPFDVVVSN 108 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-----ccCCCeeEEEEC
Confidence 679999999999999988873 224899999999999999998766555688888887641 246789999996
Q ss_pred hhhhccC-------------------hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCee
Q psy11741 188 FVLDAIN-------------------PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL 248 (352)
Q Consensus 188 ~~l~~~~-------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
--....+ ...+..+++++.++|||||.+++.....
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~-------------------------- 162 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL-------------------------- 162 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc--------------------------
Confidence 3211110 1125678889999999999999853221
Q ss_pred eeccCHHHHHHHHHhCCCceEEe
Q psy11741 249 VYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 249 ~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
.+..++...+++.||.....
T Consensus 163 ---~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 163 ---SGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred ---cCHHHHHHHHHHCCCCeEEE
Confidence 13456777888888875443
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-13 Score=118.89 Aligned_cols=101 Identities=20% Similarity=0.355 Sum_probs=77.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++. ...+|+|+|+|+.|++.|+++....+ ..+.+...+.. +..+++||+|
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~---g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~------~~~~~~fDlV 229 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL---GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE------QPIEGKADVI 229 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc------cccCCCceEE
Confidence 4789999999999999887763 33489999999999999999876543 23455555422 1235789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+++... .....++.++.++|||||+++++.+.
T Consensus 230 van~~~-----~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 230 VANILA-----EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEecCH-----HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 997543 34567899999999999999997543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-13 Score=114.50 Aligned_cols=100 Identities=19% Similarity=0.140 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|..+..+++... ++.+|+++|+++.+++.|++++...+ .++.++.+|+... ....+.||+|
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~-~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~----~~~~~~fD~I 149 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVG-KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG----YEENAPYDRI 149 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC----CCcCCCcCEE
Confidence 3488999999999999988888654 45699999999999999999876543 5799999998642 2235789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
++.....++ ...+.+.|||||++++.
T Consensus 150 ~~~~~~~~~--------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 150 YVTAAGPDI--------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred EECCCcccc--------hHHHHHhhCCCcEEEEE
Confidence 997765544 23567789999999885
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.5e-13 Score=121.47 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|.++..++. .+.+++|+|+++.|++.|+++++..+ .++.+.++|+.+ ++..+++||+|
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~----~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~----l~~~~~~~D~I 252 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGL----MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK----LPLSSESVDAI 252 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHH----hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc----CCcccCCCCEE
Confidence 4578999999999999887766 66799999999999999999876533 347888999874 45557899999
Q ss_pred Eehhhhh-------ccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 185 LLIFVLD-------AINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 185 ~~~~~l~-------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++.--.. +...+....+++.+.++|+|||++++...
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 9952211 11113367899999999999999988643
|
This family is found exclusively in the Archaea. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-13 Score=113.59 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|..+..+++... +..+|+++|+++.+++.|++++...+ .++.++.+|+... . ....+||+|
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~-~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~---~-~~~~~fD~I 150 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVG-RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG---W-EPLAPYDRI 150 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC---C-cccCCCCEE
Confidence 3478999999999999999988753 34579999999999999999877643 5799999998642 1 124689999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++.....++ ...+.+.|+|||++++..
T Consensus 151 i~~~~~~~~--------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 151 YVTAAGPKI--------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred EEcCCcccc--------cHHHHHhcCcCcEEEEEE
Confidence 987665444 345778899999999853
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=114.83 Aligned_cols=125 Identities=21% Similarity=0.307 Sum_probs=92.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCc--eEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDR--CHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||||.+++..++. ....++|+|++|.+++.|+.|+..++.. +.....+... . ...++||+|
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kL---GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~----~-~~~~~~DvI 233 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKL---GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE----V-PENGPFDVI 233 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHc---CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh----h-cccCcccEE
Confidence 5889999999999999988884 3346999999999999999998765433 2222222211 1 123699999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+++-. . +-+..+...+.++|||||+++++-+-. -..+.+.+.++++
T Consensus 234 VANIL-A----~vl~~La~~~~~~lkpgg~lIlSGIl~-----------------------------~q~~~V~~a~~~~ 279 (300)
T COG2264 234 VANIL-A----EVLVELAPDIKRLLKPGGRLILSGILE-----------------------------DQAESVAEAYEQA 279 (300)
T ss_pred Eehhh-H----HHHHHHHHHHHHHcCCCceEEEEeehH-----------------------------hHHHHHHHHHHhC
Confidence 99652 2 345678899999999999999984321 1256788889999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||.++....
T Consensus 280 gf~v~~~~~ 288 (300)
T COG2264 280 GFEVVEVLE 288 (300)
T ss_pred CCeEeEEEe
Confidence 999988744
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=112.31 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=96.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|||+|||+|.++..++... ++.+|+|+|+|+.|++.|+++. +++.++++|+.+. . .+++||+|+++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~--~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~----~-~~~kFDlIIsN 133 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC--KPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEF----E-SNEKFDVVISN 133 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhh----c-ccCCCcEEEEc
Confidence 5689999999999988887754 4579999999999999999874 3588999998742 1 24689999997
Q ss_pred hhhhccChhH------------------HHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeee
Q psy11741 188 FVLDAINPNK------------------MQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLV 249 (352)
Q Consensus 188 ~~l~~~~~~~------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (352)
-.+++.+..+ +...+.....+|+|+|.+++.-.+.+ .| .
T Consensus 134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~----------------~y-------~ 190 (279)
T PHA03411 134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP----------------YY-------D 190 (279)
T ss_pred CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc----------------cc-------c
Confidence 7776654332 24566777788899997766521111 01 1
Q ss_pred eccCHHHHHHHHHhCCCceEE
Q psy11741 250 YFFTREEVKTMFESAGFVEKQ 270 (352)
Q Consensus 250 ~~~~~~~~~~ll~~~Gf~~~~ 270 (352)
..+++++++.+++++||....
T Consensus 191 ~sl~~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 191 GTMKSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred ccCCHHHHHHHHHhcCcEecC
Confidence 127899999999999998654
|
|
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-12 Score=108.82 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=109.4
Q ss_pred CCCHHHHHHhhHHhhhhHHHHhhhccccccc-chhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcC
Q psy11741 52 QIDKNLIQTLNEDVAKNWDAFYNVHQNRFFK-DRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCK 130 (352)
Q Consensus 52 ~~~~~~~~~~~~~~~~yw~~~y~~~~~~f~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~ 130 (352)
..+..+..||+.....=-.+. .....-+.. -.+|+...+-.....+ +..++|+|||-|..++-+-++
T Consensus 71 ~~~~~Va~HYN~~~e~g~e~R-q~S~Ii~lRnfNNwIKs~LI~~y~~~---------~~~~~~LgCGKGGDLlKw~kA-- 138 (389)
T KOG1975|consen 71 SKSSEVAEHYNERTEVGREKR-QRSPIIFLRNFNNWIKSVLINLYTKR---------GDDVLDLGCGKGGDLLKWDKA-- 138 (389)
T ss_pred chhHHHHHHHHHHHHHhHhhh-ccCceeehhhhhHHHHHHHHHHHhcc---------ccccceeccCCcccHhHhhhh--
Confidence 445667788877654332211 011111222 2467766655444332 778999999999998887764
Q ss_pred CCCeEEEEEeCCHHHHHHHHhccccCC-------CceEEEEecCCCCCC--CCCCCCCcceEEEehhhhhcc--ChhHHH
Q psy11741 131 NDNVFVYGCDFSENAVNILKEHEEYKP-------DRCHAFVCDVTSEDW--NPPFAPESLDIVLLIFVLDAI--NPNKMQ 199 (352)
Q Consensus 131 ~~~~~v~gvD~s~~~l~~a~~~~~~~~-------~~v~~~~~d~~~~~~--~~~~~~~~fD~V~~~~~l~~~--~~~~~~ 199 (352)
.-..++|+|+++..++.|+++..... -.+.|+.+|...... .+++++.+||+|-|-+++|+. +.+...
T Consensus 139 -gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar 217 (389)
T KOG1975|consen 139 -GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESAR 217 (389)
T ss_pred -cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHH
Confidence 33479999999999999999876421 236788999876432 223345669999999999876 667888
Q ss_pred HHHHHHHHhcCCCEEEEEEeCC
Q psy11741 200 HVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 200 ~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+|+++++.|+|||+++-+.++
T Consensus 218 ~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 218 IALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred HHHHHHHhhcCCCcEEEEecCc
Confidence 9999999999999999987544
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-12 Score=115.05 Aligned_cols=103 Identities=16% Similarity=0.215 Sum_probs=81.4
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+|||+|||+|.++..++... ++.+|+|+|+|+.+++.|++++...+ .++.++++|+.+ .+ ++++||+|++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~--p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~---~l--~~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF--PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA---AL--PGRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh---hC--CCCCccEEEE
Confidence 689999999999999999876 77899999999999999999987543 469999999864 22 3468999998
Q ss_pred hh------hh-------hccC----------hhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IF------VL-------DAIN----------PNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~------~l-------~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+- .+ .|-+ .+....+++.+.++|+|||.+++.
T Consensus 208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 51 11 1110 123568899999999999999985
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.4e-13 Score=119.74 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=87.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+..+||||||+|.++..+|... |...++|+|+++.+++.|.+++... ..|+.++++|+.... ..++++++|.|++
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~--P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll--~~~~~~s~D~I~l 198 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN--PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL--ELLPSNSVEKIFV 198 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh--hhCCCCceeEEEE
Confidence 5689999999999999999987 7889999999999999998887654 368999999986431 2356889999998
Q ss_pred hhhhhccChh----HHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAINPN----KMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+...+.... ....+++.++++|+|||.+.+.+-.
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 6543332111 1257899999999999999997543
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=110.36 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC----CCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW----NPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~----~~~~~~~~fD 182 (352)
++.+|||+|||+|.++..+++... +...|+|+|+++ |. . .+++.++++|+..... ..++.+++||
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~-~~~~V~aVDi~~-~~-----~----~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIG-DKGRVIACDILP-MD-----P----IVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcC-CCceEEEEeccc-cc-----C----CCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 377999999999999999998764 456899999998 21 1 1458999999985310 0023467899
Q ss_pred EEEehhhhhccChh--H-------HHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 183 IVLLIFVLDAINPN--K-------MQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~l~~~~~~--~-------~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+|++..+.++.... + ...+|+.+.++|+|||.|++..+.
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 99997765544211 1 256899999999999999997554
|
|
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.8e-13 Score=109.33 Aligned_cols=101 Identities=20% Similarity=0.304 Sum_probs=75.1
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCc--eEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDR--CHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
.++|+|||+|..++.++..+. +|+|+|+|+.||+.|++.....-.+ .+....++. .+--.+++.|+|++.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k----~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v----~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK----EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMV----DLLGGEESVDLITAA 107 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh----hheeecCCHHHHHHhhcCCCcccccCCccccccccc----cccCCCcceeeehhh
Confidence 789999999988888888653 7999999999999999875431111 111111111 222227899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCE-EEEEEeCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGG-MVLFRDYG 221 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~ 221 (352)
.++|++ ++.++.+.+.++||+.| .+.+-.++
T Consensus 108 qa~HWF---dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 108 QAVHWF---DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hhHHhh---chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 999998 77899999999998755 77776555
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-12 Score=109.63 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=102.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
..+|||+|||+|..++.++++. +..+++|||+.+.|.+.|+++.+. ...++.+++.|+..... .....+||+|+
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~--~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~--~~~~~~fD~Ii 120 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRT--EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK--ALVFASFDLII 120 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccC--CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh--cccccccCEEE
Confidence 7899999999999999999976 458999999999999999999876 34789999999986432 23345799999
Q ss_pred ehhhh----------------hccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeee
Q psy11741 186 LIFVL----------------DAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLV 249 (352)
Q Consensus 186 ~~~~l----------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (352)
|+=-. +|...-+...+++.+.++|||||.+.+....
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------------------------- 172 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------------------------- 172 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH----------------------------
Confidence 93211 1112235778899999999999999986321
Q ss_pred eccCHHHHHHHHHhCCCceEEeee
Q psy11741 250 YFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 250 ~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
-...++..++.+.+|.......
T Consensus 173 --erl~ei~~~l~~~~~~~k~i~~ 194 (248)
T COG4123 173 --ERLAEIIELLKSYNLEPKRIQF 194 (248)
T ss_pred --HHHHHHHHHHHhcCCCceEEEE
Confidence 2355678888888888877654
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=114.30 Aligned_cols=122 Identities=20% Similarity=0.303 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||||.+++..++. ...+|+|+|+++.+++.|++|+..++....+...... . ...++||+|++
T Consensus 161 ~g~~vLDvG~GSGILaiaA~kl---GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~----~--~~~~~~dlvvA 231 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKL---GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE----D--LVEGKFDLVVA 231 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHT---TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS----C--TCCS-EEEEEE
T ss_pred CCCEEEEeCCcHHHHHHHHHHc---CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec----c--cccccCCEEEE
Confidence 4789999999999999888884 2337999999999999999998865533333332111 1 22589999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
+-.. +-+..++..+.++|+|||+|+++-+-. -..+++.+.+++ ||
T Consensus 232 NI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~-----------------------------~~~~~v~~a~~~-g~ 276 (295)
T PF06325_consen 232 NILA-----DVLLELAPDIASLLKPGGYLILSGILE-----------------------------EQEDEVIEAYKQ-GF 276 (295)
T ss_dssp ES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEEG-----------------------------GGHHHHHHHHHT-TE
T ss_pred CCCH-----HHHHHHHHHHHHhhCCCCEEEEccccH-----------------------------HHHHHHHHHHHC-CC
Confidence 6443 445678888999999999999974321 235677888876 99
Q ss_pred ceEEee
Q psy11741 267 VEKQNL 272 (352)
Q Consensus 267 ~~~~~~ 272 (352)
.+++..
T Consensus 277 ~~~~~~ 282 (295)
T PF06325_consen 277 ELVEER 282 (295)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987764
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-12 Score=109.81 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=93.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++... ++.+++|+|+|+.+++.|++++...+ ++++++|+.+. ++ ...++||+|++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~--~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~---l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL--DGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDA---LPTALRGRVDILAA 159 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhh---cchhcCCCEeEEEE
Confidence 4589999999999999998865 67799999999999999999986543 57888998642 11 11357999998
Q ss_pred hhh------hhccCh------------------hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceee
Q psy11741 187 IFV------LDAINP------------------NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242 (352)
Q Consensus 187 ~~~------l~~~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
+-- +..+++ +-+..+++.+.++|+|||++++....
T Consensus 160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~--------------------- 218 (251)
T TIGR03704 160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE--------------------- 218 (251)
T ss_pred CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---------------------
Confidence 521 111111 12457888888999999999986321
Q ss_pred cCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 243 RGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 243 ~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
-...++..++++.||...-.
T Consensus 219 ---------~~~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 219 ---------RQAPLAVEAFARAGLIARVA 238 (251)
T ss_pred ---------chHHHHHHHHHHCCCCceee
Confidence 22456788888899876554
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-12 Score=105.31 Aligned_cols=157 Identities=17% Similarity=0.200 Sum_probs=107.6
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-Cc-eEEEEecCCCCCCCCC----CCCCcceE
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DR-CHAFVCDVTSEDWNPP----FAPESLDI 183 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~-v~~~~~d~~~~~~~~~----~~~~~fD~ 183 (352)
+|||||||||..+.++++.+ |.....-.|+++..+...+......+ .| ..-+..|+....+... ...++||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l--P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL--PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC--CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 69999999999999999999 88899999999988655544333211 22 2355778887644433 23578999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
|++.+++|-++......+++.+.++|+|||.|++.-+-..+-.. ......--+......+ ...-..+.+++..+..+
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~--ts~SN~~FD~sLr~rd-p~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKF--TSESNAAFDASLRSRD-PEWGIRDIEDVEALAAA 182 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEe--CCcHHHHHHHHHhcCC-CCcCccCHHHHHHHHHH
Confidence 99999999999999999999999999999999986432111000 0000000000011111 12335788999999999
Q ss_pred CCCceEEe
Q psy11741 264 AGFVEKQN 271 (352)
Q Consensus 264 ~Gf~~~~~ 271 (352)
+|+...+.
T Consensus 183 ~GL~l~~~ 190 (204)
T PF06080_consen 183 HGLELEED 190 (204)
T ss_pred CCCccCcc
Confidence 99997654
|
The function of this family is unknown. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=108.13 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=79.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..++... ++.+|+++|+|+.+++.+++++...+ .+++++.+|+.+. ++.....+|.++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~--~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~---~~~~~~~~d~v~ 114 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLC--PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC---LAQLAPAPDRVC 114 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH---HhhCCCCCCEEE
Confidence 47899999999999999998754 66799999999999999999876533 5688999988541 111123456665
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
... ......+++++.++|+|||.+++....
T Consensus 115 ~~~------~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 115 IEG------GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred EEC------CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 421 145678999999999999999997543
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.7e-12 Score=110.62 Aligned_cols=124 Identities=21% Similarity=0.359 Sum_probs=93.8
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
+|||+|||||.++..++... +.++|+|+|+|+.+++.|++|+...+ .++.+++.|.... . .++||+|+++=
T Consensus 113 ~ilDlGTGSG~iai~la~~~--~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-----~-~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG--PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-----L-RGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhC--cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-----c-CCceeEEEeCC
Confidence 79999999999999999987 77899999999999999999988765 5566777776542 2 34899999931
Q ss_pred --hh---hccC------------------hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCC
Q psy11741 189 --VL---DAIN------------------PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGD 245 (352)
Q Consensus 189 --~l---~~~~------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (352)
.- .+.. .+-...++..+.+.|+|||.+++..-
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g------------------------- 239 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG------------------------- 239 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC-------------------------
Confidence 10 0110 13456788889999999999998532
Q ss_pred CeeeeccCHHHHHHHHHhCC-CceEEe
Q psy11741 246 GTLVYFFTREEVKTMFESAG-FVEKQN 271 (352)
Q Consensus 246 ~~~~~~~~~~~~~~ll~~~G-f~~~~~ 271 (352)
+-+.+.+.+++.+.| |..+..
T Consensus 240 -----~~q~~~v~~~~~~~~~~~~v~~ 261 (280)
T COG2890 240 -----LTQGEAVKALFEDTGFFEIVET 261 (280)
T ss_pred -----CCcHHHHHHHHHhcCCceEEEE
Confidence 134677899999999 554444
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-12 Score=101.10 Aligned_cols=107 Identities=21% Similarity=0.370 Sum_probs=82.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..+++.. ..+++|+|+++..++.|+.++...+ .++.+.++|+.+.. ..+++++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~---~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG---AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC---TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC---CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhccCceeEEEE
Confidence 3589999999999999998853 4799999999999999999987643 57999999987531 124578999999
Q ss_pred ehhhhhcc------ChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAI------NPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++--.... .......+++.+.++|+|||.+++..
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 96544322 11245688999999999999998864
|
... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-12 Score=106.28 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCccccHHHH----Hhhc---CCCCeEEEEEeCCHHHHHHHHhcc-------------------cc-----
Q psy11741 107 STKNILEIGCGVGNSVFPI----VEHC---KNDNVFVYGCDFSENAVNILKEHE-------------------EY----- 155 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l----~~~~---~~~~~~v~gvD~s~~~l~~a~~~~-------------------~~----- 155 (352)
+..+|+..||++|.-.-.| .+.. .....+++|+|+|+.+++.|++-. ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4679999999999744333 2311 112579999999999999998642 00
Q ss_pred -----CCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 156 -----KPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 156 -----~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
....|.|.+.|+.+ .+.+.+.||+|+|.+|+-+++++...++++.+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~----~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD----PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCC----CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 01468899999985 122367899999999999999999999999999999999999996
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.2e-12 Score=108.67 Aligned_cols=99 Identities=23% Similarity=0.338 Sum_probs=84.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|||||+|+|.++..+++++ |+.+++.+|. |..++.+++ ..+++++.+|+.+ ++| . +|++++.
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~--P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~---~~P--~--~D~~~l~ 165 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAY--PNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFD---PLP--V--ADVYLLR 165 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHS--TTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTT---CCS--S--ESEEEEE
T ss_pred ccEEEeccCcchHHHHHHHHHC--CCCcceeecc-Hhhhhcccc-----ccccccccccHHh---hhc--c--ccceeee
Confidence 5689999999999999999988 9999999999 788888887 4789999999973 333 3 9999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCC--EEEEEEeCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPG--GMVLFRDYG 221 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~~ 221 (352)
.++|++++++...+|+++++.|+|| |+|+|.+..
T Consensus 166 ~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 166 HVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp SSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9999999999999999999999999 999998754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=105.90 Aligned_cols=99 Identities=18% Similarity=0.126 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|..+..++... .+++++|+++.+++.|++++...+ .++.+..+|..+. .+ ..++||+|
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~----~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~-~~~~fD~I 148 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV----RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG---WP-AYAPFDRI 148 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh----CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC---CC-cCCCcCEE
Confidence 347899999999999998777742 379999999999999999876543 4689999997542 22 24789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++...++++ .+.+.+.|+|||.+++...
T Consensus 149 ~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 998765544 3456789999999998643
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=103.54 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC----CCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW----NPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~----~~~~~~~~fD 182 (352)
++.+|||+|||+|.++..+++... +..+++|+|+|+.+ . ..++.+.++|+.+... ....+.++||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~-~~~~v~~vDis~~~------~----~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVG-GKGRVIAVDLQPMK------P----IENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhC-CCceEEEEeccccc------c----CCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 478999999999999998888653 44589999999864 1 1457888889864210 0013456899
Q ss_pred EEEehhhh--------hcc-ChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVL--------DAI-NPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l--------~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|++.... .|. ..+....++..+.++|+|||.+++..+
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 99985432 111 112457899999999999999999643
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.8e-12 Score=110.20 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=83.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||||||+|.++..+++.. ++.+++++|+++.+++.|++.+... .++++++.+|+.+. +....++||+|+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~--p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~---l~~~~~~yD~I~ 141 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYL--PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY---IAVHRHSTDVIL 141 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH---HHhCCCCCCEEE
Confidence 6789999999999999998876 7889999999999999999987542 36899999998642 112246899999
Q ss_pred ehhhhh-ccCh-hHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 186 LIFVLD-AINP-NKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 186 ~~~~l~-~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+...-. ..+. -....+++.+.++|+|||++++..+
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 853211 1111 1236899999999999999999644
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=91.19 Aligned_cols=102 Identities=22% Similarity=0.400 Sum_probs=82.7
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc-cCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
+|+|+|||.|..+..++. . ...+++++|+++.++..+++... ....++.+...|+.+... ...++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~-~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP---EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc---ccCCceEEEEEcc
Confidence 489999999999988887 2 66799999999999999984322 233678899999875321 2357899999999
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+++++ ......+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98873 378899999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-11 Score=101.40 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=116.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-Cc-eEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DR-CHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~-v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.+.+||||+||.|+..+............+...|+|+..++.+++.++..+ .+ ++|.++|+.+.. .+.-.+...+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-SLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh-HhhccCCCCCEE
Confidence 477999999999999988888774323689999999999999999887643 34 499999998753 222224567999
Q ss_pred EehhhhhccChhH-HHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 185 LLIFVLDAINPNK-MQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 185 ~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
+++..++.+++.+ ....++.+.+++.|||+++.+. .++.+++.+...... . +..+........+..++.++++.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg--QPwHPQle~IAr~Lt-s--Hr~g~~WvMRrRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG--QPWHPQLEMIARVLT-S--HRDGKAWVMRRRSQAEMDQLVEA 288 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC--CCCCcchHHHHHHHh-c--ccCCCceEEEecCHHHHHHHHHH
Confidence 9999999886655 5568999999999999999864 222333322221110 0 11122344556899999999999
Q ss_pred CCCceEEeee
Q psy11741 264 AGFVEKQNLI 273 (352)
Q Consensus 264 ~Gf~~~~~~~ 273 (352)
+||.-+....
T Consensus 289 aGF~K~~q~I 298 (311)
T PF12147_consen 289 AGFEKIDQRI 298 (311)
T ss_pred cCCchhhhee
Confidence 9999777655
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=114.64 Aligned_cols=115 Identities=17% Similarity=0.271 Sum_probs=86.8
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
...++.+|||+|||+|..+..+++.. ++.+|+|+|+|+.+++.+++++...+.++.+.++|+.... ..+..++||.
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~--~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~--~~~~~~~fD~ 316 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELA--PQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA--QWWDGQPFDR 316 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch--hhcccCCCCE
Confidence 34458899999999999999999876 4468999999999999999998776666789999987421 1123568999
Q ss_pred EEehh------hhh------c-cChh-------HHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 184 VLLIF------VLD------A-INPN-------KMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 184 V~~~~------~l~------~-~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|++.- ++. + .++. .+..+|..+.++|||||.+++.+...
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99522 111 1 1111 24578999999999999999987643
|
|
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=100.41 Aligned_cols=149 Identities=14% Similarity=0.274 Sum_probs=95.7
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC------C---------------------
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP------D--------------------- 158 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~------~--------------------- 158 (352)
..+..+|||||.+|.++..+++.+ ....|+|+||++..++.|+++.+... .
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F--~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDF--GPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhh--ccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 347889999999999999999998 45569999999999999999865311 0
Q ss_pred ---------ceEEEEecCCCCCC-CCCCCCCcceEEEehhhhh--cc--ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCc
Q psy11741 159 ---------RCHAFVCDVTSEDW-NPPFAPESLDIVLLIFVLD--AI--NPNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224 (352)
Q Consensus 159 ---------~v~~~~~d~~~~~~-~~~~~~~~fD~V~~~~~l~--~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 224 (352)
++.|...+..-... -+.+....||+|+|..+-. |+ .++-+..+++++.++|.|||+|++ ++.+..
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-EPQpWk 213 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-EPQPWK 213 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-cCCchH
Confidence 11111111100000 0112356899999977643 33 357789999999999999999999 454443
Q ss_pred hhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 225 LVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
...-.......+..++ ...++.++....++.+.
T Consensus 214 sY~kaar~~e~~~~ny-------~~i~lkp~~f~~~l~q~ 246 (288)
T KOG2899|consen 214 SYKKAARRSEKLAANY-------FKIFLKPEDFEDWLNQI 246 (288)
T ss_pred HHHHHHHHHHHhhcCc-------cceecCHHHHHhhhhhh
Confidence 3222211111111111 11346788888887665
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=109.11 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=81.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc------CCCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY------KPDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
+.+||+||||+|..+..+++.. ...+|+++|+++.+++.|++.+.. ..++++++.+|+... +....++|
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~--~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~---l~~~~~~y 151 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHP--SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF---VAETENSF 151 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCC--CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH---HhhCCCcc
Confidence 6799999999999999988752 345899999999999999987642 246899999998752 22236789
Q ss_pred eEEEehhhhhccChhH--HHHHHHHHHHhcCCCEEEEEEe
Q psy11741 182 DIVLLIFVLDAINPNK--MQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+|++...-....... ...+++.+++.|+|||++++..
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999865332221111 2577899999999999998853
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=114.33 Aligned_cols=112 Identities=17% Similarity=0.237 Sum_probs=85.8
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||+|||+|..+..+++... .+.+|+|+|+|+.+++.+++++...+ .++.+.++|+... + ++++||.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~----~-~~~~fD~ 321 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQ-NRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF----S-PEEQPDA 321 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc----c-cCCCCCE
Confidence 44578999999999999998888654 34589999999999999999987644 4689999998742 2 3568999
Q ss_pred EEeh----h--hhh-------ccChh-------HHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 184 VLLI----F--VLD-------AINPN-------KMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 184 V~~~----~--~l~-------~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|++. . ++. +.+++ .+..+|..+.++|||||+++..+.+.
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9962 1 111 11222 24578999999999999999988764
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-11 Score=113.78 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=88.2
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
...++.+|||+|||+|..+..+++... ...+|+++|+++.+++.+++++...+ .++.++.+|+.......+...++||
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~-~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMG-DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 345588999999999999999998753 34589999999999999999987654 4689999998753211113357899
Q ss_pred EEEeh------hhhhccC-------hh-------HHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 183 IVLLI------FVLDAIN-------PN-------KMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 183 ~V~~~------~~l~~~~-------~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
.|++. .++.+-+ +. .+..+|.++.++|||||+|+..+...
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99973 2232211 11 25788999999999999999877653
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-11 Score=111.54 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=79.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||+|||+|.++..++.. ...+|+++|+|+.+++.|++++...+ .+++++++|+.+....+....++||+|
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~---ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG---GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 789999999999998776652 34489999999999999999987644 368999999875211111124689999
Q ss_pred EehhhhhccCh-------hHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFVLDAINP-------NKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~l~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++.--...-+. .....++..+.++|+|||.|+....+
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 98521100011 24556677788999999999986543
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=102.80 Aligned_cols=135 Identities=10% Similarity=0.184 Sum_probs=95.1
Q ss_pred hhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHH----HHhhcCC--CCeEEEEEeCCHHHH
Q psy11741 73 YNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFP----IVEHCKN--DNVFVYGCDFSENAV 146 (352)
Q Consensus 73 y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~----l~~~~~~--~~~~v~gvD~s~~~l 146 (352)
...+.+.|+.+...+......+.+. .+..+|+..||+||.-.-. +.+..+. ...+|+|+|+|+.++
T Consensus 89 ltineT~FFRd~~~f~~L~~~~~~~--------~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL 160 (287)
T PRK10611 89 LTTNLTAFFREAHHFPILAEHARRR--------SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL 160 (287)
T ss_pred hhCCCCCccCCcHHHHHHHHHHHhc--------CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHH
Confidence 3455567887765443322222111 1247999999999974333 3332211 247899999999999
Q ss_pred HHHHhcc------------------cc--------------CCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccC
Q psy11741 147 NILKEHE------------------EY--------------KPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAIN 194 (352)
Q Consensus 147 ~~a~~~~------------------~~--------------~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~ 194 (352)
+.|++-. .. ....|.|.+.|+.+.. .+ +.+.||+|+|.+++.|++
T Consensus 161 ~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~--~~-~~~~fD~I~cRNvliyF~ 237 (287)
T PRK10611 161 EKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQ--WA-VPGPFDAIFCRNVMIYFD 237 (287)
T ss_pred HHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCC--Cc-cCCCcceeeHhhHHhcCC
Confidence 9998752 00 1145788888887531 11 257899999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 195 PNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 195 ~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
++...++++.+++.|+|||+|++.
T Consensus 238 ~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 238 KTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEe
Confidence 899999999999999999999885
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-11 Score=100.25 Aligned_cols=127 Identities=22% Similarity=0.258 Sum_probs=101.5
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
+..++.+|||.|.|+|.++..|+.... +..+|+.+|+.+...+.|++|++.. ..++++..+|+.+.. ....|
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg-~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-----~~~~v 164 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVG-PEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI-----DEEDV 164 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhC-CCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-----ccccc
Confidence 456799999999999999999998775 6679999999999999999998763 355899999998642 23489
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHH
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 261 (352)
|.|+. +..++..++..+.++|+|||.+++..++. -..+.....+
T Consensus 165 Dav~L-------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~v-----------------------------eQv~kt~~~l 208 (256)
T COG2519 165 DAVFL-------DLPDPWNVLEHVSDALKPGGVVVVYSPTV-----------------------------EQVEKTVEAL 208 (256)
T ss_pred CEEEE-------cCCChHHHHHHHHHHhCCCcEEEEEcCCH-----------------------------HHHHHHHHHH
Confidence 99986 44788999999999999999999875442 1234455667
Q ss_pred HhCCCceEEee
Q psy11741 262 ESAGFVEKQNL 272 (352)
Q Consensus 262 ~~~Gf~~~~~~ 272 (352)
++.||..++..
T Consensus 209 ~~~g~~~ie~~ 219 (256)
T COG2519 209 RERGFVDIEAV 219 (256)
T ss_pred HhcCccchhhh
Confidence 77788877653
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-11 Score=120.42 Aligned_cols=104 Identities=15% Similarity=0.194 Sum_probs=80.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||+|||+|.++..++.. ...+|+++|+|+.+++.|++++...+ .+++++++|+.+. +....++||+|
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~---Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~---l~~~~~~fDlI 612 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG---GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW---LKEAREQFDLI 612 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH---HHHcCCCcCEE
Confidence 789999999999999999983 22369999999999999999987543 3689999998642 11114689999
Q ss_pred Eehh-----------hhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIF-----------VLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~-----------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++.- .... ..+...++..+.++|+|||.+++..
T Consensus 613 ilDPP~f~~~~~~~~~~~~--~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDV--QRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred EECCCCCCCCCccchhhhH--HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9831 1111 2456788899999999999998864
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-11 Score=112.74 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=86.9
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||+|||+|..+..++.... ++.+|+++|+|+.+++.+++++...+ .++.+.++|+.... ....++||.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~---~~~~~~fD~ 310 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMK-DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT---EYVQDTFDR 310 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh---hhhhccCCE
Confidence 44588999999999999999998764 45699999999999999999987654 45889999987421 123568999
Q ss_pred EEehh---hhhcc----------Ch-------hHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 184 VLLIF---VLDAI----------NP-------NKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 184 V~~~~---~l~~~----------~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|++.. .+..+ ++ ..+..+|..+.++|||||.++..+.+.
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99721 12211 11 134678999999999999999987764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.2e-11 Score=119.94 Aligned_cols=131 Identities=23% Similarity=0.298 Sum_probs=94.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-----------------CceEEEEecCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-----------------DRCHAFVCDVTSE 170 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-----------------~~v~~~~~d~~~~ 170 (352)
+.+|||+|||+|.+++.+++.. +..+|+|+|+|+.+++.|++|+...+ .+++++++|+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~--~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW--LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 5689999999999999999976 66799999999999999999876421 3689999998752
Q ss_pred CCCCCCCCCcceEEEehh--------------hhhc------------c----------ChhHHHHHHHHHHHhcCCCEE
Q psy11741 171 DWNPPFAPESLDIVLLIF--------------VLDA------------I----------NPNKMQHVINQVYKYLKPGGM 214 (352)
Q Consensus 171 ~~~~~~~~~~fD~V~~~~--------------~l~~------------~----------~~~~~~~~l~~~~~~LkpgG~ 214 (352)
..-...+||+|+++= +..| . ...-..+++.++.++|+|||.
T Consensus 197 ---~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~ 273 (1082)
T PLN02672 197 ---CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI 273 (1082)
T ss_pred ---ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 211123699999821 1100 0 012246788888899999999
Q ss_pred EEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHH-HHHHhCCCceEEeee
Q psy11741 215 VLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVK-TMFESAGFVEKQNLI 273 (352)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~Gf~~~~~~~ 273 (352)
+++.. +. -..+.+. .++++.||..+....
T Consensus 274 l~lEi-G~-----------------------------~q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 274 MIFNM-GG-----------------------------RPGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred EEEEE-Cc-----------------------------cHHHHHHHHHHHHCCCCeeEEee
Confidence 99853 21 1234566 577788888776654
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-11 Score=105.45 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|..+..+++... ....|+++|+++.+++.++++++..+ .++.+...|+.. ++...++||.|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~-~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~----~~~~~~~fD~V 144 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMK-NEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRV----FGAAVPKFDAI 144 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcC-CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHH----hhhhccCCCEE
Confidence 3578999999999999999988764 33489999999999999999987654 468888888763 22234569999
Q ss_pred Eehh------hhhc-------cCh-------hHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 185 LLIF------VLDA-------INP-------NKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 185 ~~~~------~l~~-------~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
++.- ++.. .++ ..+..+|+.+.++|||||+|+.++.+.
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9721 1111 111 134569999999999999999887654
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=98.97 Aligned_cols=146 Identities=18% Similarity=0.255 Sum_probs=95.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
...++||||+|.|..+..++..+. +|++.|.|+.|....+++- .+ +.|..+ ....+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~----~v~aTE~S~~Mr~rL~~kg------~~--vl~~~~----w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK----EVYATEASPPMRWRLSKKG------FT--VLDIDD----WQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc----eEEeecCCHHHHHHHHhCC------Ce--EEehhh----hhccCCceEEEee
Confidence 467899999999999999998664 6999999999988877652 22 223332 1122568999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCcc-ccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRC-LQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
.+++..- .++..+|+.+++.|+|+|++++...-+... ......+.. -........+. ..--..+.+.+.++.+|
T Consensus 158 LNvLDRc--~~P~~LL~~i~~~l~p~G~lilAvVlP~~p-yVE~~~g~~~~P~e~l~~~g~--~~E~~v~~l~~v~~p~G 232 (265)
T PF05219_consen 158 LNVLDRC--DRPLTLLRDIRRALKPNGRLILAVVLPFRP-YVEFGGGKSNRPSELLPVKGA--TFEEQVSSLVNVFEPAG 232 (265)
T ss_pred hhhhhcc--CCHHHHHHHHHHHhCCCCEEEEEEEecccc-cEEcCCCCCCCchhhcCCCCC--cHHHHHHHHHHHHHhcC
Confidence 9999987 788999999999999999999865332211 000101000 00000111110 11112334458899999
Q ss_pred CceEEeee
Q psy11741 266 FVEKQNLI 273 (352)
Q Consensus 266 f~~~~~~~ 273 (352)
|+++....
T Consensus 233 F~v~~~tr 240 (265)
T PF05219_consen 233 FEVERWTR 240 (265)
T ss_pred CEEEEEec
Confidence 99987643
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-11 Score=107.32 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++... ....|+++|+++.+++.|++++...+ .++.++.+|+... ....++||+|+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~-~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~----~~~~~~fD~Ii 154 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVG-EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG----VPEFAPYDVIF 154 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc----ccccCCccEEE
Confidence 478999999999999999998653 23479999999999999998876533 5688999997642 12235799999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+...+.++ ...+.+.|+|||.+++..
T Consensus 155 ~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 155 VTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 87655443 234677899999988853
|
|
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-11 Score=97.84 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=115.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
...++|||||-|.+...+... .-.+++-+|.|-.|++.++..-. ....+...++|-. .+++.++++|+|+++
T Consensus 73 fp~a~diGcs~G~v~rhl~~e---~vekli~~DtS~~M~~s~~~~qd-p~i~~~~~v~DEE----~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE---GVEKLIMMDTSYDMIKSCRDAQD-PSIETSYFVGDEE----FLDFKENSVDLIISS 144 (325)
T ss_pred CcceeecccchhhhhHHHHhc---chhheeeeecchHHHHHhhccCC-CceEEEEEecchh----cccccccchhhhhhh
Confidence 457999999999999998874 33478999999999999986532 2234556666654 567889999999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeec-C-CCeeeeccCHHHHHHHHHhCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYAR-G-DGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ll~~~G 265 (352)
..+|+. .++...+.++...|||+|.|+-..++......++....- ...... + .+....+....++..++.++|
T Consensus 145 lslHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqL---AelER~GGiSphiSPf~qvrDiG~LL~rAG 219 (325)
T KOG2940|consen 145 LSLHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQL---AELEREGGISPHISPFTQVRDIGNLLTRAG 219 (325)
T ss_pred hhhhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhH---HHHHhccCCCCCcChhhhhhhhhhHHhhcC
Confidence 999999 788999999999999999999988777666555432210 000011 1 122234556788999999999
Q ss_pred CceEEeeeee
Q psy11741 266 FVEKQNLIDR 275 (352)
Q Consensus 266 f~~~~~~~~~ 275 (352)
|....+..+.
T Consensus 220 F~m~tvDtDE 229 (325)
T KOG2940|consen 220 FSMLTVDTDE 229 (325)
T ss_pred cccceecccc
Confidence 9998876644
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=104.22 Aligned_cols=107 Identities=15% Similarity=0.274 Sum_probs=79.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcc--------ccCCCceEEEEecCCCCCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE--------EYKPDRCHAFVCDVTSEDWNPPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~--------~~~~~~v~~~~~d~~~~~~~~~~~~~ 179 (352)
+.+||++|||+|..+..+++.. +..+|++||+++.+++.|++.. ....++++++.+|+... +....+
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~--~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f---L~~~~~ 225 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYE--TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF---LSSPSS 225 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcC--CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH---HHhcCC
Confidence 6799999999999888888753 4568999999999999999631 11347899999998852 222356
Q ss_pred cceEEEehhhhh---ccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLD---AINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~---~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+||+|++...-. ....-.-..+++.+++.|+|||++++..
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 899999864211 1111123568899999999999998863
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-11 Score=104.10 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=83.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCC--CCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPP--FAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~--~~~~~fD~ 183 (352)
+++|||+|||+|..+..++.... ++.+++++|+++.+++.|++++...+ .+++++.+|+.+....+. .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~-~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALP-EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 78999999999999998888764 45699999999999999999987643 579999999875211110 11468999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|++.. ........+..+.++|+|||.+++..
T Consensus 148 VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 98743 22456678899999999999999864
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.4e-11 Score=111.68 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=84.1
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEE--EEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHA--FVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~--~~~d~~~~~~~~~~~~~~f 181 (352)
.+.++.+|||+|||+|..+..+++.. ++.+|+|+|+++.+++.++++++..+..+.+ ..+|..... .....++|
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~--~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~--~~~~~~~f 310 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELA--PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS--QWAENEQF 310 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc--cccccccc
Confidence 34558899999999999999999876 4568999999999999999998765543433 555554211 11135789
Q ss_pred eEEEeh------hhhhccC-------hh-------HHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 182 DIVLLI------FVLDAIN-------PN-------KMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 182 D~V~~~------~~l~~~~-------~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|.|++. +++.+.+ ++ .+..+|.++.++|||||.|+..+.+.
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999962 2333321 11 25689999999999999999987764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=101.86 Aligned_cols=105 Identities=16% Similarity=0.234 Sum_probs=83.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCce-EEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC-HAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||.|.++..+++.. |..+++-+|+|..+++.|+++...++... .+...|+.+. . .++||+|+|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~--p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-----v-~~kfd~Iis 230 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKS--PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-----V-EGKFDLIIS 230 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhC--CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-----c-cccccEEEe
Confidence 4599999999999999999987 78899999999999999999988654333 5677777642 2 239999999
Q ss_pred hhhhhcc---ChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 187 IFVLDAI---NPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 187 ~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+=-+|.= ...-..+++....++|++||.|.+...
T Consensus 231 NPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 231 NPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 7666532 112234899999999999999998744
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=100.21 Aligned_cols=140 Identities=14% Similarity=0.218 Sum_probs=99.3
Q ss_pred hhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccH----HHHHhhcCC---CCeEEEEEeCCHHH
Q psy11741 73 YNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV----FPIVEHCKN---DNVFVYGCDFSENA 145 (352)
Q Consensus 73 y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~----~~l~~~~~~---~~~~v~gvD~s~~~ 145 (352)
...+.+.|+.+.......-..++|..... ......+|+-.||+||.-. ..+.+.+.. ...+|+|.|+|..+
T Consensus 64 ltin~T~FFR~~~~f~~l~~~v~p~l~~~--~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~ 141 (268)
T COG1352 64 LTINVTEFFRDPEHFEELRDEVLPELVKR--KKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSV 141 (268)
T ss_pred hhhccchhccCcHHHHHHHHHHHHHHHhh--ccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHH
Confidence 34455678877765544444444422110 0113679999999999743 334444421 36799999999999
Q ss_pred HHHHHhcc-------------------cc-----------CCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccCh
Q psy11741 146 VNILKEHE-------------------EY-----------KPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINP 195 (352)
Q Consensus 146 l~~a~~~~-------------------~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~ 195 (352)
|+.|+.-. .. ....|.|.+.|+....+ ..+.||+|+|.+|+-+++.
T Consensus 142 L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~----~~~~fD~IfCRNVLIYFd~ 217 (268)
T COG1352 142 LEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP----FLGKFDLIFCRNVLIYFDE 217 (268)
T ss_pred HHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc----ccCCCCEEEEcceEEeeCH
Confidence 99997542 00 01357788888876431 3578999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 196 NKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 196 ~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+...++++.++..|+|||+|++.
T Consensus 218 ~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 218 ETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEc
Confidence 99999999999999999999996
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=110.45 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=84.5
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||+|||+|..+..+++... +..+|+++|+++.+++.+++++...+ .++.++++|+.... ..+ .++||+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~-~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~--~~~-~~~fD~ 323 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLK-NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH--EKF-AEKFDK 323 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc--chh-cccCCE
Confidence 34578999999999999999998753 45699999999999999999887644 45899999987531 112 268999
Q ss_pred EEehhh---hhcc----------ChhH-------HHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 184 VLLIFV---LDAI----------NPNK-------MQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~~~---l~~~----------~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|++..- ...+ ++.+ +..+|+.+.++|||||.++..+..
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 997421 1110 1112 356899999999999999987654
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.6e-11 Score=96.19 Aligned_cols=167 Identities=19% Similarity=0.311 Sum_probs=94.0
Q ss_pred HhhccccCCCHHHHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHH
Q psy11741 45 VENNSVLQIDKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFP 124 (352)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~ 124 (352)
+.+..++..+.+..+.|.+...-| +.|...... +-..|-...+..++.... ...+...|-|+|||.+.++..
T Consensus 18 lNE~LYT~~s~~A~~lf~~dP~~F-~~YH~Gfr~---Qv~~WP~nPvd~iI~~l~----~~~~~~viaD~GCGdA~la~~ 89 (219)
T PF05148_consen 18 LNEQLYTTSSEEALKLFQEDPELF-DIYHEGFRQ---QVKKWPVNPVDVIIEWLK----KRPKSLVIADFGCGDAKLAKA 89 (219)
T ss_dssp HHHHHHHS-HHHHHHHHHH-HHHH-HHHHHHHHH---HHCTSSS-HHHHHHHHHC----TS-TTS-EEEES-TT-HHHHH
T ss_pred HHHhHhcCCHHHHHHHHHhCHHHH-HHHHHHHHH---HHhcCCCCcHHHHHHHHH----hcCCCEEEEECCCchHHHHHh
Confidence 344444444555555555555433 433221110 112333334444443321 122256899999999988755
Q ss_pred HHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHH
Q psy11741 125 IVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQ 204 (352)
Q Consensus 125 l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~ 204 (352)
+. .+.+|...|+-.. +-.+..+|+. ..|+++++.|++++..+|... ++...+++
T Consensus 90 ~~-----~~~~V~SfDLva~--------------n~~Vtacdia----~vPL~~~svDv~VfcLSLMGT---n~~~fi~E 143 (219)
T PF05148_consen 90 VP-----NKHKVHSFDLVAP--------------NPRVTACDIA----NVPLEDESVDVAVFCLSLMGT---NWPDFIRE 143 (219)
T ss_dssp -------S---EEEEESS-S--------------STTEEES-TT----S-S--TT-EEEEEEES---SS----HHHHHHH
T ss_pred cc-----cCceEEEeeccCC--------------CCCEEEecCc----cCcCCCCceeEEEEEhhhhCC---CcHHHHHH
Confidence 42 3457999998542 2246778997 677889999999988877654 88899999
Q ss_pred HHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 205 VYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 205 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
+.|+|||||.|.|.+... ++-+.+.+.+.++..||......
T Consensus 144 A~RvLK~~G~L~IAEV~S---------------------------Rf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 144 ANRVLKPGGILKIAEVKS---------------------------RFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp HHHHEEEEEEEEEEEEGG---------------------------G-S-HHHHHHHHHCTTEEEEEEE
T ss_pred HHheeccCcEEEEEEecc---------------------------cCcCHHHHHHHHHHCCCeEEecc
Confidence 999999999999986431 23467889999999999988753
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=100.06 Aligned_cols=130 Identities=19% Similarity=0.282 Sum_probs=96.9
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
..|+.+|||.|.|+|.++..|+..+. +..+|+..|+.+...+.|+++++..+ .++++...|+.+..+.... +..+|
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~-p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~~~~D 115 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVG-PTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL-ESDFD 115 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT--TTSEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhC-CCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc-cCccc
Confidence 44599999999999999999999887 66799999999999999999988743 5899999999753221111 36799
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhc-CCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHH
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYL-KPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 261 (352)
.|+. +..++..++..+.++| +|||++.+-.++. -........|
T Consensus 116 avfL-------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i-----------------------------eQv~~~~~~L 159 (247)
T PF08704_consen 116 AVFL-------DLPDPWEAIPHAKRALKKPGGRICCFSPCI-----------------------------EQVQKTVEAL 159 (247)
T ss_dssp EEEE-------ESSSGGGGHHHHHHHE-EEEEEEEEEESSH-----------------------------HHHHHHHHHH
T ss_pred EEEE-------eCCCHHHHHHHHHHHHhcCCceEEEECCCH-----------------------------HHHHHHHHHH
Confidence 9986 3367778899999999 8999999865432 2244566778
Q ss_pred HhCCCceEEee
Q psy11741 262 ESAGFVEKQNL 272 (352)
Q Consensus 262 ~~~Gf~~~~~~ 272 (352)
++.||..++..
T Consensus 160 ~~~gf~~i~~~ 170 (247)
T PF08704_consen 160 REHGFTDIETV 170 (247)
T ss_dssp HHTTEEEEEEE
T ss_pred HHCCCeeeEEE
Confidence 88999888754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=95.23 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++ .+.+++++|+++.+++.++++... ..+++++.+|+.+ +++++.+||.|++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~----~~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~----~~~~~~~~d~vi~ 83 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLE----RAARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALK----FDLPKLQPYKVVG 83 (169)
T ss_pred CcCEEEEECCCccHHHHHHHh----cCCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhc----CCccccCCCEEEE
Confidence 367999999999999999998 456899999999999999988754 3578999999984 3344557999988
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+--. ++..+.+..+++.. .+.++|.+++.
T Consensus 84 n~Py-~~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 84 NLPY-NISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred CCCc-ccHHHHHHHHHhcC--CCcceEEEEEE
Confidence 6443 34333444444322 24578888886
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=95.66 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=80.7
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||||||+|..+.-|++.. .+|+.+|..+...+.|+++++..+ .|+.+.++|-... ++ +...||.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~----~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G---~~-~~aPyD~ 141 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLV----GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG---WP-EEAPYDR 141 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHh----CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC---CC-CCCCcCE
Confidence 3458999999999999999998853 389999999999999999988755 4799999998753 22 2478999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|++......++. .+.+.|+|||++++-.-
T Consensus 142 I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 142 IIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 999887766632 25567899999999643
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.2e-11 Score=98.96 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=76.5
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||||||+|..+..++...+ +...|+++|..+...+.|++++...+ .++.++.+|.... .+ ....||.
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg-~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g---~~-~~apfD~ 144 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVG-PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG---WP-EEAPFDR 144 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHS-TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT---TG-GG-SEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcC-ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc---cc-cCCCcCE
Confidence 34589999999999999998888765 55689999999999999999987633 5899999998652 22 2468999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|++......++ ..+.+.|++||+|++-.
T Consensus 145 I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 145 IIVTAAVPEIP--------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp EEESSBBSS----------HHHHHTEEEEEEEEEEE
T ss_pred EEEeeccchHH--------HHHHHhcCCCcEEEEEE
Confidence 99987765442 22566799999999953
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-10 Score=96.59 Aligned_cols=111 Identities=18% Similarity=0.261 Sum_probs=81.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCC-CCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSED-WNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~-~~~~~~~~~fD~V 184 (352)
+..|||+|||+|.++..++..+ +...++++|.|+.++..|.+|+... ...+.....+++... ++.+...+++|++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L--~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGL--PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cceEEEecCCccHHHHHHHhcC--CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 4589999999999999999988 7889999999999999999998753 255666655444332 1334557899999
Q ss_pred Eehhh--h----hcc------------------ChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 185 LLIFV--L----DAI------------------NPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 185 ~~~~~--l----~~~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+++=- . ..+ ..+....++.-+.|+|+|||.+.+...
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 98311 0 000 012445667778899999999999754
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-09 Score=95.30 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=85.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC--CCeEEEEEeCCHHHHHHHHhccc-cCCCc--eEEEEecCCCCCCCCCC--CCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN--DNVFVYGCDFSENAVNILKEHEE-YKPDR--CHAFVCDVTSEDWNPPF--APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~-~~~~~--v~~~~~d~~~~~~~~~~--~~~~ 180 (352)
+..|+|+|||+|.-+..|++.+.. ....++++|+|..+++.+.++.. ..-+. +.-+++|+.+....++- ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 568999999999998888877732 34689999999999999998877 33233 44578888764322221 1234
Q ss_pred ceEEEeh-hhhhccChhHHHHHHHHHHH-hcCCCEEEEEEe
Q psy11741 181 LDIVLLI-FVLDAINPNKMQHVINQVYK-YLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~-~~l~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~ 219 (352)
..+|+.. +++.++++++...+|+++++ .|+|||.|++..
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 5666665 48999999999999999999 999999998854
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=94.40 Aligned_cols=147 Identities=21% Similarity=0.294 Sum_probs=95.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC----------------C-------------
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK----------------P------------- 157 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~----------------~------------- 157 (352)
++.++||||||+-..-..-|.. .--+|+..|.++..++..++-.+.. +
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~---~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE---WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG---TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH---hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 4779999999996543222221 3347999999998887655433110 0
Q ss_pred Cce-EEEEecCCCCCCCCCC---CCCcceEEEehhhhhcc--ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhh
Q psy11741 158 DRC-HAFVCDVTSEDWNPPF---APESLDIVLLIFVLDAI--NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFK 231 (352)
Q Consensus 158 ~~v-~~~~~d~~~~~~~~~~---~~~~fD~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 231 (352)
..| .++.+|+.+.. ++.. .+.+||+|++.++++.. +.+...++++++.++|||||.|++...
T Consensus 133 ~~Vk~Vv~cDV~~~~-pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~----------- 200 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPN-PLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV----------- 200 (256)
T ss_dssp HHEEEEEE--TTSSS-TTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE-----------
T ss_pred HhhceEEEeeccCCC-CCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE-----------
Confidence 113 36778998754 2211 12369999999999877 567899999999999999999999743
Q ss_pred cCccccCceeecCCCe-eeeccCHHHHHHHHHhCCCceEEee
Q psy11741 232 KGRCLQDNFYARGDGT-LVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
+...+|..+... .....+.+.+++.++++||.+....
T Consensus 201 ----l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 201 ----LGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ----SS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ----cCceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 223445444442 3346889999999999999988775
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-10 Score=107.22 Aligned_cols=103 Identities=22% Similarity=0.327 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...+ .+++++++|+.+.....++.+++||+|+
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~----~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQ----AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 4679999999999999999884 4589999999999999999876543 5799999998753212234456899998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+.-- .......++.+.+ ++|+++++++.
T Consensus 373 ~dPP-----r~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 373 LDPP-----RAGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred ECcC-----CcChHHHHHHHHh-cCCCeEEEEEe
Confidence 7421 1122345555555 68999999874
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.8e-10 Score=106.96 Aligned_cols=106 Identities=12% Similarity=0.149 Sum_probs=79.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCC-eEEEEEeCCHHHHHHHHhcc--cc------CCCceEEEEecCCCCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDN-VFVYGCDFSENAVNILKEHE--EY------KPDRCHAFVCDVTSEDWNPPFAP 178 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~-~~v~gvD~s~~~l~~a~~~~--~~------~~~~v~~~~~d~~~~~~~~~~~~ 178 (352)
+++|||+|||+|..+..+++. +. .+++++|+++.+++.|+++. .. ..++++++.+|..+. +...+
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~---~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~---l~~~~ 371 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKY---PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW---LRKLA 371 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhC---CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH---HHhCC
Confidence 679999999999999998874 43 69999999999999999842 11 236799999998752 22224
Q ss_pred CcceEEEehhhhhccCh---hHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 179 ESLDIVLLIFVLDAINP---NKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++||+|++.......+. -.-..+++.++++|+|||++++..
T Consensus 372 ~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 372 EKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 68999999743222110 112457899999999999999864
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-10 Score=100.73 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=78.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+||+||||+|..+..+++.. +..+++++|+++.+++.|++.+.. ..+++++..+|.... +....++||
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~--~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~---l~~~~~~yD 147 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK--SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF---LADTENTFD 147 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC--CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH---HHhCCCCcc
Confidence 5699999999999998888753 356899999999999999987542 135678888887532 111246899
Q ss_pred EEEehhhhhccChhH--HHHHHHHHHHhcCCCEEEEEE
Q psy11741 183 IVLLIFVLDAINPNK--MQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|++......-+... ...+++.+++.|+|||++++.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 999865422111122 467889999999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-10 Score=100.51 Aligned_cols=108 Identities=18% Similarity=0.200 Sum_probs=80.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+++||+||||.|..+..+++.. +..+|+.+|+++.+++.|++.+.. ..++++++.+|+...... .++++||
T Consensus 92 pkrVLiIGgG~G~~~rellk~~--~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~--~~~~~yD 167 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHS--SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN--APEGTYD 167 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCC--CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh--ccCCCCC
Confidence 7899999999999999998752 346899999999999999997643 246899999997642111 1256899
Q ss_pred EEEehhhhhccChh--HHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPN--KMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|++...-...... .-..+++.+++.|+|||+++...
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 99985433221111 13568899999999999998753
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.3e-10 Score=93.75 Aligned_cols=98 Identities=12% Similarity=0.182 Sum_probs=72.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcC-CCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK-NDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..+++... .+..+|+|+|+++.+++.|+++. .++.+...|+... ++ +++||+|++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~~~~----~~-~~~FDlIIs 120 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----PEATWINADALTT----EF-DTLFDMAIS 120 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----cCCEEEEcchhcc----cc-cCCccEEEE
Confidence 67999999999999999887542 13568999999999999999875 3478999998742 22 568999999
Q ss_pred hhhhhcc----------ChhHHHHHHHHHHHhcCCCEE
Q psy11741 187 IFVLDAI----------NPNKMQHVINQVYKYLKPGGM 214 (352)
Q Consensus 187 ~~~l~~~----------~~~~~~~~l~~~~~~LkpgG~ 214 (352)
+=-..-. +..-...++..+.++++||+.
T Consensus 121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 5322211 112355688888887777775
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-10 Score=95.04 Aligned_cols=108 Identities=21% Similarity=0.302 Sum_probs=80.6
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+||||||.|.++..+|... |+..++|+|++...+..|.+++.. ...|+.++++|+.... ..-++++++|.|+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~--Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l-~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN--PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELL-RRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS--TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHH-HHHSTTTSEEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHC--CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHH-hhcccCCchheEEEe
Confidence 378999999999999999987 899999999999999999887665 4589999999987521 112346899999986
Q ss_pred hhhhccChh------HHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 188 FVLDAINPN------KMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 188 ~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+---+.... -...++..++++|+|||.|.+.+
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 543322111 23478999999999999999875
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.3e-10 Score=102.75 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=85.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+++|||+-|-||.++...|. .|+ +|++||.|..+++.|++|++-++ ..+.++++|+.+......-...+||+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~----gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAAL----GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred CCeEEEecccCcHHHHHHHh----cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 88999999999999999988 666 99999999999999999987644 45789999998632222222458999
Q ss_pred EEeh---------hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 184 VLLI---------FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~---------~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|++- ....- ..+...++..+.++|+|||.+++.+..
T Consensus 294 IilDPPsF~r~k~~~~~~--~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 294 IILDPPSFARSKKQEFSA--QRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEECCcccccCcccchhH--HHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9981 11111 257788999999999999999997654
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=5e-10 Score=97.92 Aligned_cols=106 Identities=12% Similarity=0.171 Sum_probs=84.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCC--CCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPP--FAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~--~~~~~fD~ 183 (352)
+++|||+|||+|..+..++...+ ++.+++++|.++.+.+.|+++++..+ .+++++.+|+.+....+. -..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~-~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLP-ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 78999999999999999998765 45679999999999999999987644 579999999875211110 11368999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+.-. +..+....++.+.++|+|||.+++..
T Consensus 198 VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 198 AFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEECC-----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 99753 33567888999999999999999964
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-10 Score=96.36 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=84.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCC--CCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPP--FAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~--~~~~~fD~ 183 (352)
+++||||||++|.-+..+++.++ ++.+|+.+|+++...+.|++.++..+ .+++++.+|+.+....+. ...++||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~-~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALP-EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTST-TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhc-ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 77999999999999999999875 56799999999999999999887644 689999999864211111 11358999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|+.-. ...+....+..+.++|+|||++++...
T Consensus 125 VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 125 VFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEcc-----cccchhhHHHHHhhhccCCeEEEEccc
Confidence 99854 345677888888999999999999743
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.9e-10 Score=92.92 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=85.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEE-ecCCCCCCCCCCCCCcceE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFV-CDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~-~d~~~~~~~~~~~~~~fD~ 183 (352)
++++|||||++.|.-+..++..+.. ..+++.+|+++++.+.|+++++..+ .++..+. +|..+.... ...++||+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~--~~~~~fDl 135 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR--LLDGSFDL 135 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh--ccCCCccE
Confidence 4889999999999999999999852 6699999999999999999988744 4577777 476643211 34689999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|+.-. ...+....+..+.++|+|||++++...
T Consensus 136 iFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 136 VFIDA-----DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred EEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 98743 346778899999999999999999753
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.8e-10 Score=89.16 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=62.0
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
..++.|+|+|||||.++...+.. ....|+|+|+++++++.+++|......++.|+++|+.+. .+.+|.|+
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~l---Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~-------~~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALL---GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF-------RGKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhc---CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-------CCccceEE
Confidence 34778999999999999887774 346899999999999999999988778899999999853 56788888
Q ss_pred ehh
Q psy11741 186 LIF 188 (352)
Q Consensus 186 ~~~ 188 (352)
.+=
T Consensus 114 mNP 116 (198)
T COG2263 114 MNP 116 (198)
T ss_pred ECC
Confidence 853
|
|
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.6e-09 Score=87.79 Aligned_cols=110 Identities=22% Similarity=0.384 Sum_probs=87.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
...|-|+|||.+.++.. ....|+..|+-+ .+-.+..+|+. ..|+++++.|+++++
T Consensus 181 ~~vIaD~GCGEakiA~~-------~~~kV~SfDL~a--------------~~~~V~~cDm~----~vPl~d~svDvaV~C 235 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS-------ERHKVHSFDLVA--------------VNERVIACDMR----NVPLEDESVDVAVFC 235 (325)
T ss_pred ceEEEecccchhhhhhc-------cccceeeeeeec--------------CCCceeecccc----CCcCccCcccEEEee
Confidence 67899999999987652 344789999743 23467789998 577889999999887
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.++.- .++..+++++.|+|+|||.+.|.+... +|.+...+...+...||.
T Consensus 236 LSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~S---------------------------Rf~dv~~f~r~l~~lGF~ 285 (325)
T KOG3045|consen 236 LSLMG---TNLADFIKEANRILKPGGLLYIAEVKS---------------------------RFSDVKGFVRALTKLGFD 285 (325)
T ss_pred Hhhhc---ccHHHHHHHHHHHhccCceEEEEehhh---------------------------hcccHHHHHHHHHHcCCe
Confidence 77654 488899999999999999999986532 245667788999999999
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
+....
T Consensus 286 ~~~~d 290 (325)
T KOG3045|consen 286 VKHKD 290 (325)
T ss_pred eeehh
Confidence 87754
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.6e-10 Score=93.57 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=88.4
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC-ceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD-RCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+||||||.|.++..+|+.. |...++|||+....+..|.+++...+. |+.+++.|+......+ .++++.|-|+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n--P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~-~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN--PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYL-IPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC--CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhc-CCCCCeeEEEEE
Confidence 478999999999999999987 889999999999999999988887777 9999999998653222 346699999987
Q ss_pred hhhhccCh------hHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 188 FVLDAINP------NKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 188 ~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+.--|... =-...+++.+.++|+|||.|.+.+-
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 65333211 1245789999999999999999753
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-09 Score=93.74 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=83.5
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEe-cCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVC-DVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~-d~~~~~~~~~~~~~~fD 182 (352)
..+|..|||-=||||.++..... -|++++|+|++..|++-|+.|++..+ ....+... |++ .+|++++++|
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl----~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~----~lpl~~~~vd 266 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGL----MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDAT----NLPLRDNSVD 266 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhh----cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccc----cCCCCCCccc
Confidence 44588999999999999888776 88999999999999999999998754 44545554 887 5667777899
Q ss_pred EEEehh-----h-hhccC-hhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIF-----V-LDAIN-PNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~-----~-l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.|++-- + ..-.. .+-...+|+.+.++|++||++++..
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 999821 1 11111 2346789999999999999999964
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=97.49 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=72.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++. .+.+|+|+|+|+.|++.|++++...+ .+++++++|+.+.. ....++||+|++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~----~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~---~~~~~~~D~Vv~ 246 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT----PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA---TAQGEVPDLVLV 246 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH---HhcCCCCeEEEE
Confidence 67999999999999999998 56799999999999999999987644 47999999987421 112357999997
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.-- .......+.++...++|++++++++
T Consensus 247 dPP-----r~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 247 NPP-----RRGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CCC-----CCCccHHHHHHHHHcCCCeEEEEEC
Confidence 521 1111122222333467888888764
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-09 Score=88.51 Aligned_cols=105 Identities=9% Similarity=0.017 Sum_probs=74.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++.. ...+|+++|.++.+++.++++++..+ .++.++++|+... ++...++||+|++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr---~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~---l~~~~~~fDlV~~ 127 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSR---YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF---LAQPGTPHNVVFV 127 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH---HhhcCCCceEEEE
Confidence 679999999999999865543 33589999999999999999877543 4689999998642 2222457999998
Q ss_pred hhhhhccChhHHHHHHHHHHH--hcCCCEEEEEEeCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYK--YLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~ 221 (352)
.=-.. - .-...+++.+.. +|+|+|++++....
T Consensus 128 DPPy~-~--g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 128 DPPFR-K--GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCCCC-C--ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 53311 1 223345555554 37999999987543
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-09 Score=100.94 Aligned_cols=103 Identities=18% Similarity=0.292 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.|++++...+ .+++++.+|+.+....++..+++||+|+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~----~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQ----AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHh----CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 3679999999999999999984 4589999999999999999886543 5799999998642111223346799998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+.---. .-...+++.+.+ ++|+++++++
T Consensus 368 ~dPPr~----G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 368 LDPPRK----GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred ECcCCC----CCCHHHHHHHHh-cCCCEEEEEc
Confidence 632100 012445555544 7899988775
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-09 Score=89.71 Aligned_cols=109 Identities=24% Similarity=0.306 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
++.+|||+|||+|..++.++... ...+|+..|.++ .++.++.+++.+. .++.+...|-.+..........+||
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~--~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF--GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT---T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred CCceEEEECCccchhHHHHHhcc--CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 37899999999999999888863 467899999999 9999988876533 5677777665431100112346899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|++..+++.- +....+++.+.++|+|+|.+++...
T Consensus 122 ~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999999865 8889999999999999998777543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-08 Score=78.91 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=98.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..-+||||||+|..+..|++... ++..+.++|+++.+++...+.++.++.++..++.|+.... ..++.|+++.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~-~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-----~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG-PQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-----RNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-----ccCCccEEEEC
Confidence 56799999999999999999876 7788999999999999988888777777889999987532 24788888762
Q ss_pred h--hh-------------hcc----ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCee
Q psy11741 188 F--VL-------------DAI----NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL 248 (352)
Q Consensus 188 ~--~l-------------~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
- +. .+. ..+-..+++..+-.+|.|.|++++.....
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~-------------------------- 171 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA-------------------------- 171 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh--------------------------
Confidence 1 10 011 11235577778888999999999975432
Q ss_pred eeccCHHHHHHHHHhCCCceEEe
Q psy11741 249 VYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 249 ~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
-.++++..+++..||.+...
T Consensus 172 ---N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 172 ---NKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred ---cCHHHHHHHHhhcccceeEE
Confidence 23677888899999987654
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-08 Score=89.02 Aligned_cols=154 Identities=16% Similarity=0.049 Sum_probs=89.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-C--CceEEEE-ecCCCCCCCCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-P--DRCHAFV-CDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~--~~v~~~~-~d~~~~~~~~~~~~~~fD 182 (352)
++.+|||||||+|.+...++... ++++++|+|+++.+++.|++++... + .++.+.. .|..........+.+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~--~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE--YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 36799999999998888887765 6889999999999999999998765 2 4566654 232211101112357899
Q ss_pred EEEehhhhhccChhH---HHHHHH----------------HHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeec
Q psy11741 183 IVLLIFVLDAINPNK---MQHVIN----------------QVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYAR 243 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~---~~~~l~----------------~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
+|+|+=-++.-..+. -..-.+ ...+++.+||.+-+...-.... ..+... ..++..
T Consensus 192 livcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS--~~~~~~----~gwfts 265 (321)
T PRK11727 192 ATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES--KAFAKQ----VLWFTS 265 (321)
T ss_pred EEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH--HHHHhh----CcEEEE
Confidence 999964433221110 011111 1335566788766543221111 111111 011111
Q ss_pred CCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 244 GDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 244 ~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
- ...--+...+...+++.|...+.+
T Consensus 266 m---v~kk~~l~~l~~~L~~~~~~~~~~ 290 (321)
T PRK11727 266 L---VSKKENLPPLYRALKKVGAVEVKT 290 (321)
T ss_pred E---eeccCCHHHHHHHHHHcCCceEEE
Confidence 0 011246889999999999965544
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-09 Score=91.09 Aligned_cols=106 Identities=11% Similarity=0.076 Sum_probs=84.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCC---CCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPF---APESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~---~~~~fD 182 (352)
.++|||||+++|.-++.++...+ ++.+++.+|.++...+.|++++...+ .+|+++.+|+.+....+.. ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~-~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALP-EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCC-CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 77999999999999999998775 56799999999999999999987643 7899999998752111110 136899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+.-.- .......++.+.++|+|||++++..
T Consensus 159 ~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 159 FIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 9997532 3566778888889999999999864
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.4e-09 Score=92.51 Aligned_cols=109 Identities=21% Similarity=0.254 Sum_probs=77.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+++|||+-|-||.++...+. .|+ +|+.||.|..+++.|++|+..++ .++++++.|+.+....+. ..++||+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~----gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~-~~~~fD~ 198 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAA----GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK-KGGRFDL 198 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHH----TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH-HTT-EEE
T ss_pred CCceEEecCCCCHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh-cCCCCCE
Confidence 78999999999999998877 555 79999999999999999987543 578999999875211111 2468999
Q ss_pred EEeh---hhhhccC-hhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 184 VLLI---FVLDAIN-PNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~---~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|++- +.=.... ..+...++..+.++|+|||.|++....
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 9981 1100000 257788999999999999999886544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=9e-09 Score=91.15 Aligned_cols=150 Identities=13% Similarity=0.197 Sum_probs=102.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
-...+|+|.|.|+.+..+...+ |. +-|+++....+-.+..... +.|..+-+|+.+ +.| +-|+|++.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f--p~--ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq---~~P----~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY--PH--IKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQ---DTP----KGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC--CC--CceeecCHHHHHhhhhhhc---CCcceecccccc---cCC----CcCeEEEE
Confidence 3678999999999999999865 44 6777777777766665543 338888899876 333 34699999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhh-hcCccccCcee--ecCCCeeeeccCHHHHHHHHHhC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF-KKGRCLQDNFY--ARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+++||+++++..++|++++..|+|||.+++.+...+......- ..........+ ....+ ..-.+..++..++.++
T Consensus 244 WiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~--Gkert~~e~q~l~~~~ 321 (342)
T KOG3178|consen 244 WILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSG--GKERTLKEFQALLPEE 321 (342)
T ss_pred eecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhcc--ceeccHHHHHhcchhh
Confidence 9999999999999999999999999999998764332000000 00000000000 00010 1125788999999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||.+..+..
T Consensus 322 gF~~~~~~~ 330 (342)
T KOG3178|consen 322 GFPVCMVAL 330 (342)
T ss_pred cCceeEEEe
Confidence 999877643
|
|
| >KOG1331|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.7e-09 Score=89.97 Aligned_cols=99 Identities=24% Similarity=0.436 Sum_probs=80.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+..++|+|||.|..+.. +|...++|+|++...+..|++.-. .....+|+. .+|+.+.+||.+++.
T Consensus 46 gsv~~d~gCGngky~~~------~p~~~~ig~D~c~~l~~~ak~~~~-----~~~~~ad~l----~~p~~~~s~d~~lsi 110 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV------NPLCLIIGCDLCTGLLGGAKRSGG-----DNVCRADAL----KLPFREESFDAALSI 110 (293)
T ss_pred cceeeecccCCcccCcC------CCcceeeecchhhhhccccccCCC-----ceeehhhhh----cCCCCCCccccchhh
Confidence 77899999999976432 166789999999998888765421 157788887 677888999999999
Q ss_pred hhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 188 FVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 188 ~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.++||+ +......+++++.+.|+|||..++..+.
T Consensus 111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 111 AVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 999999 4566778999999999999998876554
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-08 Score=79.36 Aligned_cols=113 Identities=17% Similarity=0.133 Sum_probs=92.4
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC-CCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP-PFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~fD~V 184 (352)
..+.-|||+|.|+|.++..++++.- +...+++++.|+.......+... .+.++.+|+.+....+ .+.+..||.|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv-~~~~L~~iE~~~dF~~~L~~~~p----~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGV-RPESLTAIEYSPDFVCHLNQLYP----GVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCC-CccceEEEEeCHHHHHHHHHhCC----CccccccchhhHHHHHhhcCCCeeeeE
Confidence 3478999999999999999998754 55689999999999999988763 3568888887643222 2446789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
+|..-+-.++.....++|+.+...|.+||.++.-.+++.
T Consensus 122 iS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 122 ISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred EeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 998877777778888999999999999999998888753
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9e-09 Score=85.37 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=100.9
Q ss_pred CCCCCCCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhcccc---CCCceEEEEecCCCCCCCCCCCC
Q psy11741 103 TDTCSTKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEY---KPDRCHAFVCDVTSEDWNPPFAP 178 (352)
Q Consensus 103 ~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~ 178 (352)
.+...+.+|||.+.|-|..++..++ .|+ .|+.++.++..++.|.-|.-. ....++.+.+|+.+.. ..+++
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~----rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V--~~~~D 203 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALE----RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV--KDFDD 203 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHH----cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH--hcCCc
Confidence 3455689999999999999998888 566 999999999999999877432 1246899999987642 34668
Q ss_pred CcceEEEeh---hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHH
Q psy11741 179 ESLDIVLLI---FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTRE 255 (352)
Q Consensus 179 ~~fD~V~~~---~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (352)
.+||+|+-. +++. ..=.-..+.++++|+|||||.++-..-++... |.. .--+.
T Consensus 204 ~sfDaIiHDPPRfS~A--geLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------------yrG-------~d~~~ 259 (287)
T COG2521 204 ESFDAIIHDPPRFSLA--GELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------------YRG-------LDLPK 259 (287)
T ss_pred cccceEeeCCCccchh--hhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------------ccc-------CChhH
Confidence 999999861 1111 11244678999999999999999865443210 000 01245
Q ss_pred HHHHHHHhCCCceEEe
Q psy11741 256 EVKTMFESAGFVEKQN 271 (352)
Q Consensus 256 ~~~~ll~~~Gf~~~~~ 271 (352)
.+...|+++||.++..
T Consensus 260 gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 260 GVAERLRRVGFEVVKK 275 (287)
T ss_pred HHHHHHHhcCceeeee
Confidence 6888999999997765
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-08 Score=81.00 Aligned_cols=123 Identities=21% Similarity=0.328 Sum_probs=91.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~V~~ 186 (352)
..++|||||=+......-. .-..|+.||+.+. .-...+.|+.+. ++| -+.++||+|.+
T Consensus 52 ~lrlLEVGals~~N~~s~~-----~~fdvt~IDLns~--------------~~~I~qqDFm~r--plp~~~~e~FdvIs~ 110 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTS-----GWFDVTRIDLNSQ--------------HPGILQQDFMER--PLPKNESEKFDVISL 110 (219)
T ss_pred cceEEeecccCCCCccccc-----CceeeEEeecCCC--------------CCCceeeccccC--CCCCCcccceeEEEE
Confidence 4799999998765543322 4457999999762 124567788754 222 23678999999
Q ss_pred hhhhhccC-hhHHHHHHHHHHHhcCCCEE-----EEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHH
Q psy11741 187 IFVLDAIN-PNKMQHVINQVYKYLKPGGM-----VLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 187 ~~~l~~~~-~~~~~~~l~~~~~~LkpgG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (352)
+.||.+++ +...-.+++++.+.|+|+|. |++..+.+ ++ ...++++.+.+..+
T Consensus 111 SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~------------Cv----------~NSRy~~~~~l~~i 168 (219)
T PF11968_consen 111 SLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP------------CV----------TNSRYMTEERLREI 168 (219)
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch------------Hh----------hcccccCHHHHHHH
Confidence 99999994 77888999999999999999 88764321 11 23356889999999
Q ss_pred HHhCCCceEEeee
Q psy11741 261 FESAGFVEKQNLI 273 (352)
Q Consensus 261 l~~~Gf~~~~~~~ 273 (352)
++..||..+....
T Consensus 169 m~~LGf~~~~~~~ 181 (219)
T PF11968_consen 169 MESLGFTRVKYKK 181 (219)
T ss_pred HHhCCcEEEEEEe
Confidence 9999999988743
|
|
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.5e-09 Score=91.83 Aligned_cols=104 Identities=21% Similarity=0.306 Sum_probs=77.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+++.|||+|||+|.++...|++ ...+|+|+|.|.-+ +.|++.+..++ ..+++.++.+.+. .+| .++.|+|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA---GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP--~eKVDiI 131 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA---GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--ELP--VEKVDII 131 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh---CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ecC--ccceeEE
Confidence 4889999999999999999886 34589999998754 88888776543 4578888888754 344 6799999
Q ss_pred Eehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
++-++-+++ -...+..+|-.=-+.|+|||.++-.
T Consensus 132 vSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 132 VSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred eehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 996654444 2234555555555889999998753
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=93.97 Aligned_cols=100 Identities=11% Similarity=0.105 Sum_probs=73.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++. .+.+|+|+|+++.+++.|+++++..+ .++++..+|+.+.. ....++||+|++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~----~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~---~~~~~~~D~vi~ 306 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAG----PDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA---TAQMSAPELVLV 306 (374)
T ss_pred CCEEEEccCCccHHHHHHhh----cCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH---HhcCCCCCEEEE
Confidence 57899999999999999987 56789999999999999999986644 47999999986421 111246999987
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.=--.. -...+++.+. .++|+++++++.
T Consensus 307 DPPr~G----~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 307 NPPRRG----IGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCCCC----CcHHHHHHHH-hcCCCeEEEEEe
Confidence 421111 1234445454 379999988864
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-08 Score=88.34 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=69.1
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+..+....+..+- ..++.+|||+|||+|.++..+++. +.+++|+|+++.|++.++++... ..
T Consensus 10 nfl~d~~~~~~iv~~~~---------~~~~~~VLEIG~G~G~lt~~L~~~----~~~v~~vEid~~~~~~l~~~~~~-~~ 75 (258)
T PRK14896 10 HFLIDDRVVDRIVEYAE---------DTDGDPVLEIGPGKGALTDELAKR----AKKVYAIELDPRLAEFLRDDEIA-AG 75 (258)
T ss_pred cccCCHHHHHHHHHhcC---------CCCcCeEEEEeCccCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHhcc-CC
Confidence 56666666555444331 223789999999999999999984 45899999999999999988754 35
Q ss_pred ceEEEEecCCCCCCCCCCCCCcceEEEehhhh
Q psy11741 159 RCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL 190 (352)
Q Consensus 159 ~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l 190 (352)
++.++++|+.+. ++ ..||.|+++.-.
T Consensus 76 ~v~ii~~D~~~~----~~--~~~d~Vv~NlPy 101 (258)
T PRK14896 76 NVEIIEGDALKV----DL--PEFNKVVSNLPY 101 (258)
T ss_pred CEEEEEeccccC----Cc--hhceEEEEcCCc
Confidence 799999999743 22 248999886543
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-07 Score=81.86 Aligned_cols=145 Identities=22% Similarity=0.272 Sum_probs=97.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc--------------------------------
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-------------------------------- 154 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-------------------------------- 154 (352)
.+.+||--|||.|+++..+|. .|..+.|.|.|--|+-..+-.+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~----~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAK----LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CccEEEEcCCCcchHHHHHhh----ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 367999999999999999999 78899999999998765432110
Q ss_pred ---------cCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCch
Q psy11741 155 ---------YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225 (352)
Q Consensus 155 ---------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 225 (352)
..+.++....+|+.+.-. .+...++||+|+..+.+.-. .++...++.|.++|||||+-+ ..++--
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~-~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WI--N~GPLl- 205 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYG-PDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWI--NFGPLL- 205 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecC-CcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEE--ecCCcc-
Confidence 011244555566553210 01113789999998877755 889999999999999999433 222210
Q ss_pred hhHhhhcCccccCceeec-CCCeeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 226 VQLRFKKGRCLQDNFYAR-GDGTLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
..+... ......--++.+|+..++++.||+++....
T Consensus 206 ------------yh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 206 ------------YHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ------------ccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000000 011112347899999999999999987654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-08 Score=90.06 Aligned_cols=105 Identities=20% Similarity=0.320 Sum_probs=79.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+++||.||+|.|..+..+++.. +..+++.||+++.+++.|++.+.. ..++++++.+|.... +...+++||
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~--~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~---L~~~~~~yD 178 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK--TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE---LEKRDEKFD 178 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC--CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH---HhhCCCCcc
Confidence 6799999999999999888753 456899999999999999988653 247899999998863 223357899
Q ss_pred EEEehhhhhcc--C-hh--HHHHHHH-HHHHhcCCCEEEEEE
Q psy11741 183 IVLLIFVLDAI--N-PN--KMQHVIN-QVYKYLKPGGMVLFR 218 (352)
Q Consensus 183 ~V~~~~~l~~~--~-~~--~~~~~l~-~~~~~LkpgG~l~~~ 218 (352)
+|++-.. ... . +. .-..+++ .+.+.|+|||++++.
T Consensus 179 vIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 179 VIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9998532 110 0 00 1235677 789999999998875
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-08 Score=88.83 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++.. .+|+|+|+++.|++.++++... .++.++++|+.+. ++++-.+|.|++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~----~~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~----~~~~~~~~~vv~ 111 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA----AKVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKV----DLSELQPLKVVA 111 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC----CcEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcC----CHHHcCcceEEE
Confidence 37799999999999999999953 3899999999999999887643 6799999998853 222212477777
Q ss_pred hh
Q psy11741 187 IF 188 (352)
Q Consensus 187 ~~ 188 (352)
+-
T Consensus 112 Nl 113 (272)
T PRK00274 112 NL 113 (272)
T ss_pred eC
Confidence 53
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-08 Score=82.29 Aligned_cols=107 Identities=10% Similarity=0.017 Sum_probs=72.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||++||+|.++..++.+. ...|+++|.++.+++.+++++...+ .++.++.+|+......+......||+|+
T Consensus 50 g~~vLDLfaGsG~lglea~srg---a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRG---AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 7899999999999999999853 2389999999999999999876543 3688999998542111111122478887
Q ss_pred ehhhhhccChhHHHHHHHHHH--HhcCCCEEEEEEeC
Q psy11741 186 LIFVLDAINPNKMQHVINQVY--KYLKPGGMVLFRDY 220 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~ 220 (352)
..=-... .....++..+. .+|+++|++++...
T Consensus 127 ~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 127 LDPPFFN---GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred ECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 6322111 22334444443 46899998888643
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-08 Score=88.03 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=68.1
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-- 156 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-- 156 (352)
+|..+..+....+..+. ..++.+|||||||+|.++..+++ .+.+|+|+|+++.|++.+++++...
T Consensus 17 nFL~d~~i~~~Iv~~~~---------~~~~~~VLEIG~G~G~LT~~Ll~----~~~~V~avEiD~~li~~l~~~~~~~~~ 83 (294)
T PTZ00338 17 HILKNPLVLDKIVEKAA---------IKPTDTVLEIGPGTGNLTEKLLQ----LAKKVIAIEIDPRMVAELKKRFQNSPL 83 (294)
T ss_pred cccCCHHHHHHHHHhcC---------CCCcCEEEEecCchHHHHHHHHH----hCCcEEEEECCHHHHHHHHHHHHhcCC
Confidence 56666666555444332 22378999999999999999988 4458999999999999999887543
Q ss_pred CCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 157 PDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 157 ~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
..+++++.+|+.+. . ...||+|+++.
T Consensus 84 ~~~v~ii~~Dal~~----~--~~~~d~VvaNl 109 (294)
T PTZ00338 84 ASKLEVIEGDALKT----E--FPYFDVCVANV 109 (294)
T ss_pred CCcEEEEECCHhhh----c--ccccCEEEecC
Confidence 36799999999753 2 23689888753
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.6e-08 Score=81.91 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHH-HHhccccCCCceEEEEecCCCCCC-CCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNI-LKEHEEYKPDRCHAFVCDVTSEDW-NPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~-a~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++. ...+|+|+|+++.|+.. .+++.. -+.+...|+....+ ..+..-..+|++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~---ga~~v~avD~~~~~l~~~l~~~~~----v~~~~~~ni~~~~~~~~~~d~~~~Dvs 147 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK---GAKEVYGVDVGYNQLAEKLRQDER----VKVLERTNIRYVTPADIFPDFATFDVS 147 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc---CCCEEEEEeCCHHHHHHHHhcCCC----eeEeecCCcccCCHhHcCCCceeeeEE
Confidence 3779999999999999999984 34589999999988876 333321 11233344442111 111112367766
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCc-cccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGR-CLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
+++.. .++..+.++|+| |.+++.. - | + |..+. .....-... ....+..-.+++...+.+
T Consensus 148 fiS~~----------~~l~~i~~~l~~-~~~~~L~-K-P---q--FE~~~~~~~~~giv~--~~~~~~~~~~~~~~~~~~ 207 (228)
T TIGR00478 148 FISLI----------SILPELDLLLNP-NDLTLLF-K-P---Q--FEAGREKKNKKGVVR--DKEAIALALHKVIDKGES 207 (228)
T ss_pred EeehH----------hHHHHHHHHhCc-CeEEEEc-C-h---H--hhhcHhhcCcCCeec--CHHHHHHHHHHHHHHHHc
Confidence 65433 246778889999 7666532 1 1 1 11111 000000000 001122345667777888
Q ss_pred CCCceEEee
Q psy11741 264 AGFVEKQNL 272 (352)
Q Consensus 264 ~Gf~~~~~~ 272 (352)
.||.+....
T Consensus 208 ~~~~~~~~~ 216 (228)
T TIGR00478 208 PDFQEKKII 216 (228)
T ss_pred CCCeEeeEE
Confidence 999987764
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-07 Score=81.86 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEE-EEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHA-FVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~-~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.+.+|||+|||+|..+..+...++ .-.+++++|.|+.|++.++.........-.. ...+.... ..++ ...|+|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~--~~~DLvi 107 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRD--FLPF--PPDDLVI 107 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcc--cccC--CCCcEEE
Confidence 377999999999988777766664 4568999999999999998876543211110 11111110 1111 2349999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+.++|..++......+++.+.+.+.+ .|++.+.+.+.. +-...++++.+.+.|
T Consensus 108 ~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G-------------------------f~~i~~aR~~l~~~~ 160 (274)
T PF09243_consen 108 ASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG-------------------------FRRIAEARDQLLEKG 160 (274)
T ss_pred EehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH-------------------------HHHHHHHHHHHhhCC
Confidence 99999999667788888888887766 888877664321 233566777888888
Q ss_pred CceEEeee
Q psy11741 266 FVEKQNLI 273 (352)
Q Consensus 266 f~~~~~~~ 273 (352)
+.++.-..
T Consensus 161 ~~v~APCp 168 (274)
T PF09243_consen 161 AHVVAPCP 168 (274)
T ss_pred CceECCCc
Confidence 87776443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=83.11 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=59.3
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+..+....+..+. ..++.+|||+|||+|.++..+++.. ..++++|+++.+++.++++... ..
T Consensus 10 ~fl~d~~i~~~i~~~~~---------~~~~~~VLEiG~G~G~lt~~L~~~~----~~v~~iE~d~~~~~~l~~~~~~-~~ 75 (253)
T TIGR00755 10 NFLIDESVIQKIVEAAN---------VLEGDVVLEIGPGLGALTEPLLKRA----KKVTAIEIDPRLAEILRKLLSL-YE 75 (253)
T ss_pred ccCCCHHHHHHHHHhcC---------CCCcCEEEEeCCCCCHHHHHHHHhC----CcEEEEECCHHHHHHHHHHhCc-CC
Confidence 56666666555544332 2237899999999999999999853 4699999999999999887643 36
Q ss_pred ceEEEEecCCC
Q psy11741 159 RCHAFVCDVTS 169 (352)
Q Consensus 159 ~v~~~~~d~~~ 169 (352)
++.++.+|+..
T Consensus 76 ~v~v~~~D~~~ 86 (253)
T TIGR00755 76 RLEVIEGDALK 86 (253)
T ss_pred cEEEEECchhc
Confidence 78999999874
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=72.72 Aligned_cols=93 Identities=23% Similarity=0.253 Sum_probs=70.3
Q ss_pred CCeEEEEcCCccc-cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGN-SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~-~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||||||+|. ++..|++ .|..|+|+|+++..++.++++. +.++++|+.+....+ -+.+|+|++
T Consensus 17 ~~kileIG~GfG~~vA~~L~~----~G~~ViaIDi~~~aV~~a~~~~------~~~v~dDlf~p~~~~---y~~a~liys 83 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKE----SGFDVIVIDINEKAVEKAKKLG------LNAFVDDLFNPNLEI---YKNAKLIYS 83 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHH----CCCEEEEEECCHHHHHHHHHhC------CeEEECcCCCCCHHH---HhcCCEEEE
Confidence 5789999999996 7777876 7889999999999999887763 688999998653211 357899987
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.. ++.++...+.++++.+. .-+++...
T Consensus 84 ir-----pp~el~~~~~~la~~~~--~~~~i~~l 110 (134)
T PRK04148 84 IR-----PPRDLQPFILELAKKIN--VPLIIKPL 110 (134)
T ss_pred eC-----CCHHHHHHHHHHHHHcC--CCEEEEcC
Confidence 53 55677777777777554 44666543
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-07 Score=87.88 Aligned_cols=115 Identities=17% Similarity=0.259 Sum_probs=85.6
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+.++.+|||+|||+|.-+..++..+. ....++++|+++.-++..+++++..+ .++.+...|...... ...+.||.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~-~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~---~~~~~fD~ 186 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMN-NQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA---ALPETFDA 186 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh---hchhhcCe
Confidence 34588999999999999999999875 33489999999999999999988754 567777888764211 12467999
Q ss_pred EEe----hh--hhh-------ccCh-------hHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 184 VLL----IF--VLD-------AINP-------NKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 184 V~~----~~--~l~-------~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
|++ +. ++. .+++ .-+..+|..+.++|||||+|+-++.+..
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 995 21 111 1111 1346889999999999999998887644
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.8e-08 Score=90.08 Aligned_cols=105 Identities=21% Similarity=0.318 Sum_probs=71.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcC--CCCeEEEEEeCCHHHHHHHHhccc--cCCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK--NDNVFVYGCDFSENAVNILKEHEE--YKPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~l~~a~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+..|||||||+|.++...+++.. ....+|++|+.++.++...+++.. ..+.+|+++.+|+++. .. +.++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v----~l-pekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV----EL-PEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS----CH-SS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC----CC-CCceeE
Confidence 57899999999999876666431 124699999999988877755432 2457899999999853 22 358999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
|++=..-.+...+-...+|....+.|||||+++=
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 9994332222224556678888999999999874
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.1e-08 Score=79.49 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCe---------EEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNV---------FVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~---------~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~ 175 (352)
++..|||.-||+|.+.+..+... ... +++|+|+++.+++.|++|++..+ ..+.+.+.|+. .++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~--~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~----~l~ 101 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMG--ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAR----ELP 101 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHH--TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GG----GGG
T ss_pred CCCEEeecCCCCCHHHHHHHHHh--hCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchh----hcc
Confidence 37799999999999998876655 332 38999999999999999987643 46889999998 455
Q ss_pred CCCCcceEEEehhhhhcc-C-----hhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 176 FAPESLDIVLLIFVLDAI-N-----PNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 176 ~~~~~fD~V~~~~~l~~~-~-----~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+.++++|.|+++--...- . ..-...+++++.++|++..++++.
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 567899999995322211 1 123456778888999994444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-07 Score=81.72 Aligned_cols=104 Identities=20% Similarity=0.276 Sum_probs=75.0
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
...++.|||+|||+|.++...+.+ ...+|++++.|+ |.+.|++..+.+ ..+|.++.+-+.+. .+ +++.|
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqA---GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL---PEk~D 245 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQA---GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDI--EL---PEKVD 245 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHh---CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccc--cC---chhcc
Confidence 345889999999999999888885 445899999875 899998876653 36788888887753 22 47899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
+|++--+-..+-.+......-..++.|+|.|.++-
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 99984332222113334444456799999998875
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-07 Score=76.79 Aligned_cols=96 Identities=24% Similarity=0.288 Sum_probs=76.7
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
+++|+|+|.|.-++.++-.. |..+++.+|.+..-+...+......+ .|+++....+.+ +....+||+|++..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~--p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-----~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR--PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-----PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH---TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-----TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhC--CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-----cccCCCccEEEeeh
Confidence 89999999999999998877 88999999999987777766655433 579999998875 22468999999987
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+ ..+..++.-+..++++||.+++.
T Consensus 124 v------~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 124 V------APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp S------SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred h------cCHHHHHHHHHHhcCCCCEEEEE
Confidence 6 34567888899999999999885
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-08 Score=75.33 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+++++|+|||.|-++...+-. ..-.|+|+|+.+.+++.+++|++....++.++++|+.+ +.+..+.||.++.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~---~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdild----le~~~g~fDtavi 120 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP---KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILD----LELKGGIFDTAVI 120 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC---CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccc----hhccCCeEeeEEe
Confidence 4889999999999988544431 34479999999999999999998877778999999985 3345688999988
Q ss_pred hhhh
Q psy11741 187 IFVL 190 (352)
Q Consensus 187 ~~~l 190 (352)
+--+
T Consensus 121 NppF 124 (185)
T KOG3420|consen 121 NPPF 124 (185)
T ss_pred cCCC
Confidence 5433
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.61 E-value=4e-08 Score=90.87 Aligned_cols=100 Identities=26% Similarity=0.380 Sum_probs=69.5
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEE---EeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYG---CDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~g---vD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
..+||+|||+|.++..|.+ .+..+.. -|..+..++.|.++- +....+-+.. ..+|+++++||+|.
T Consensus 119 R~~LDvGcG~aSF~a~l~~----r~V~t~s~a~~d~~~~qvqfaleRG------vpa~~~~~~s--~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLE----RNVTTMSFAPNDEHEAQVQFALERG------VPAMIGVLGS--QRLPFPSNAFDMVH 186 (506)
T ss_pred EEEEeccceeehhHHHHhh----CCceEEEcccccCCchhhhhhhhcC------cchhhhhhcc--ccccCCccchhhhh
Confidence 3579999999999999988 4433322 255556777776552 1222222111 27899999999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|..++-.....+ ..+|-++-|+|+|||+++++...
T Consensus 187 csrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 187 CSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cccccccchhcc-cceeehhhhhhccCceEEecCCc
Confidence 988765553222 46889999999999999997543
|
; GO: 0008168 methyltransferase activity |
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-07 Score=76.46 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-----------CCceEEEEecCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-----------PDRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----------~~~v~~~~~d~~~~~~~~~ 175 (352)
++.+.||+|+|+|.++..++.....++...+|||.-++.++.+++++... ..++.++.+|.....
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~---- 157 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY---- 157 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC----
Confidence 48899999999999998888777657777799999999999999986531 246778899987532
Q ss_pred CCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 176 FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 176 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.+..+||.|++.... ..+.+++...|+|||.+++-
T Consensus 158 ~e~a~YDaIhvGAaa--------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 158 AEQAPYDAIHVGAAA--------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CccCCcceEEEccCc--------cccHHHHHHhhccCCeEEEe
Confidence 235789999987432 23445566778999999985
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-07 Score=81.13 Aligned_cols=105 Identities=14% Similarity=0.184 Sum_probs=82.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-----CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-----PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+++||-||-|.|..++.+++.. +-.+++.||+++..++.|++.+... .++++.+..|..+.. .-...+||
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~--~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v---~~~~~~fD 151 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHL--PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL---RDCEEKFD 151 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcC--CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH---HhCCCcCC
Confidence 3699999999999999999976 5678999999999999999987542 378899999987532 22234899
Q ss_pred EEEehhhhhccChh---HHHHHHHHHHHhcCCCEEEEEE
Q psy11741 183 IVLLIFVLDAINPN---KMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 183 ~V~~~~~l~~~~~~---~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|++...-. ..+. .-..+++.++++|+++|+++..
T Consensus 152 vIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 152 VIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 999855422 1110 1267899999999999999997
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.4e-08 Score=88.12 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=67.7
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCC-----------
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPF----------- 176 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~----------- 176 (352)
.+|||++||+|.++..+++. ..+|+|+|+|+.+++.|++++...+ .++.++.+|+.+....+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~----~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN----FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccccHHHHHHHhh----CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 57999999999999988884 3489999999999999999986543 4799999998652111100
Q ss_pred -CCCcceEEEehhhhhccChhH---HHHHHHHHHHhcCCCEEEEEEe
Q psy11741 177 -APESLDIVLLIFVLDAINPNK---MQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 177 -~~~~fD~V~~~~~l~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
...+||+|+.. |+. ...+++.+. +|+++++++.
T Consensus 284 ~~~~~~D~v~lD-------PPR~G~~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 284 LKSYNFSTIFVD-------PPRAGLDDETLKLVQ---AYERILYISC 320 (362)
T ss_pred ccCCCCCEEEEC-------CCCCCCcHHHHHHHH---ccCCEEEEEe
Confidence 01258999872 221 123344443 3788888864
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-07 Score=90.05 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=83.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
....+||||||.|.++..+|... |...++|+|++...+..+.++.... -.|+.+...|+... ..-++++++|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~--p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~--~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN--PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLI--LNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC--CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHH--HHhcCcccccEEE
Confidence 36688999999999999999987 8899999999999888887765443 36788888776422 1125678999999
Q ss_pred ehhhhhccCh------hHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINP------NKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
..+---|... =-...+++.++++|+|||.+.+.+
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 8765333210 123478899999999999999864
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=80.55 Aligned_cols=119 Identities=19% Similarity=0.257 Sum_probs=88.2
Q ss_pred CCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcc
Q psy11741 103 TDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 103 ~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
+.+.++.+|||++++.|.-|..+++...+.+..|+++|.|+.=++..+++++..+ .++.....|...... .....++|
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~-~~~~~~~f 230 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE-LLPGGEKF 230 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccc-cccccCcC
Confidence 3566789999999999999999999886556778999999999999999988755 456777877653221 11112369
Q ss_pred eEEEe------hhhhh-------ccCh-------hHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 182 DIVLL------IFVLD-------AINP-------NKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 182 D~V~~------~~~l~-------~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|.|++ .+++. ..++ .-+..+|..+.++|||||.|+.++.+.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 99997 11221 1111 235688999999999999999988764
|
|
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.8e-07 Score=76.04 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=84.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCC--CCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNP--PFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~--~~~~~~fD~ 183 (352)
++++||||.=+|.-++.+|..++ .+.+|+++|+++...+.+.+..+.. ...|+++++++.+....+ ....++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp-~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALP-EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcC-CCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 78999999999999999999987 5779999999999999997766543 367999999887632111 124689999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++.-. ...+....+.++.+++|+||+|++..
T Consensus 153 aFvDa-----dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVDA-----DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEcc-----chHHHHHHHHHHHhhcccccEEEEec
Confidence 98632 22455588899999999999999964
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-07 Score=85.64 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=75.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||++||+|..++.++... +...|+++|+++.+++.+++|++..+ .++.+...|+... +.. .++||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~--~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~---l~~-~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALET--GVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL---LHE-ERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH---Hhh-cCCCCEEEE
Confidence 4689999999999999998864 33589999999999999999986543 4567888888642 111 457999987
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.- +.....++..+.+.+++||+++++
T Consensus 132 DP------~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DP------FGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CC------CCCcHHHHHHHHHHhcCCCEEEEE
Confidence 42 123356777767778999999997
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-07 Score=85.14 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=49.2
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTS 169 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~ 169 (352)
.+|||+|||+|.++..+++.. ..|+|+|+++.|++.|++++...+ .++.++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~----~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF----RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC----CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 479999999999999998853 489999999999999999987644 478999999865
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-08 Score=80.76 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=71.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.++||+|+|.|.++..++..+. +|++.++|..|....+++- -++ ....+ ....+-+||+|.|.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe----evyATElS~tMr~rL~kk~----ynV----l~~~e----w~~t~~k~dli~cl 176 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE----EVYATELSWTMRDRLKKKN----YNV----LTEIE----WLQTDVKLDLILCL 176 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH----HHHHHHhhHHHHHHHhhcC----Cce----eeehh----hhhcCceeehHHHH
Confidence 68999999999999999887553 6899999999999887652 111 11111 01114469999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCC-CEEEEEEe
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKP-GGMVLFRD 219 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 219 (352)
+++.-- .++-++|+.++.+|+| .|.+++.-
T Consensus 177 NlLDRc--~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 177 NLLDRC--FDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHhh--cChHHHHHHHHHHhccCCCcEEEEE
Confidence 988755 5788999999999999 78877653
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-07 Score=72.11 Aligned_cols=139 Identities=20% Similarity=0.156 Sum_probs=85.9
Q ss_pred CCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeecc
Q psy11741 173 NPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFF 252 (352)
Q Consensus 173 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (352)
..+|.+++.|+|++..+++|++.++-..+++++++.|||||+|-+..+...-..+...... ..+.... ..-+.+....
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~v-qvggpgp-ndhP~~r~v~ 117 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDV-QVGGPGP-NDHPLHRIVK 117 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhh-hccCCCC-CCCcHHHHHH
Confidence 4567899999999999999999899999999999999999999998765433322211110 0000000 0000112234
Q ss_pred CHHHHHHHHHhCCCceEEeeeeeeeeeecCCccceeeeeEeeEEeccccccchHHHHHHHhhcCchhhhhhhhhh---hh
Q psy11741 253 TREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVHYLFVTEEVKTMFESAGFVEKQNLIDRR---LQ 329 (352)
Q Consensus 253 ~~~~~~~ll~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGF~~~~~~~~~~---~~ 329 (352)
+...+...+.++||.+.-. -+.++....+++.+| ++...+.+. -.
T Consensus 118 t~r~m~n~~m~~~~~~kl~-------------------------------e~ee~~g~fle~~~~-ven~~~~rs~~~d~ 165 (185)
T COG4627 118 TMRMMFNGFMDAGFVVKLL-------------------------------EYEEELGMFLEEDWF-VENGEIVRSFDLDQ 165 (185)
T ss_pred HHHHHHHHHHhhhheehhh-------------------------------hHHHHhhhhhhhccc-cccceeeeecCcCc
Confidence 6677888888888875422 234566666777777 332222222 23
Q ss_pred hccccccceeeeeeeh
Q psy11741 330 VNRGKQIKMYRVWIQA 345 (352)
Q Consensus 330 ~~~~~~~~~~r~~~~~ 345 (352)
.+|...+.++...+.+
T Consensus 166 rnre~rl~~~~Lilea 181 (185)
T COG4627 166 RNREIRLAFTSLILEA 181 (185)
T ss_pred ccccceecceEEEEEe
Confidence 3666666666665554
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3e-06 Score=71.24 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=75.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCc-ceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPES-LDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~-fD~V~ 185 (352)
+.+++|||+|.|.-+.++|-.+ |..+++-+|....-+...+......+ .|++++++.+.+... ... ||+|+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~--p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-----~~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF--PDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-----EKKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc--cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-----ccccCcEEE
Confidence 5799999999999999988555 88889999999887777766655543 669999998875321 123 99999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
++.+ ..+..++.-+..++++||.++.
T Consensus 141 sRAv------a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 141 SRAV------ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred eehc------cchHHHHHHHHHhcccCCcchh
Confidence 9876 3455677778899999998765
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-07 Score=81.14 Aligned_cols=81 Identities=14% Similarity=0.005 Sum_probs=63.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++..+||++||.|..+..+++.++ +..+|+|+|.++.|++.|+++... ..++.++++|+.+....++..-.++|.|++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~-~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~ 96 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLG-PKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVLAEGLGKVDGILL 96 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCC-CCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence 477999999999999999999863 357999999999999999988765 568999999988532111111127999998
Q ss_pred hhh
Q psy11741 187 IFV 189 (352)
Q Consensus 187 ~~~ 189 (352)
...
T Consensus 97 DLG 99 (296)
T PRK00050 97 DLG 99 (296)
T ss_pred CCC
Confidence 553
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.5e-07 Score=75.33 Aligned_cols=97 Identities=24% Similarity=0.389 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++..|||+.||.|.+++.+|+.. .+..|+++|++|.+++..+++++.+. ..+....+|+.+.. + .+.+|-|
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~--~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~---~--~~~~drv 173 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHG--KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL---P--EGKFDRV 173 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT---SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------TT-EEEE
T ss_pred cceEEEEccCCccHHHHHHhhhc--CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc---C--ccccCEE
Confidence 37899999999999999999854 66789999999999999999877543 56889999988531 2 6889999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (352)
++..- .....+|..+.+++++||++-
T Consensus 174 im~lp------~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLP------ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--T------SSGGGGHHHHHHHEEEEEEEE
T ss_pred EECCh------HHHHHHHHHHHHHhcCCcEEE
Confidence 98643 222346777888999999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.4e-07 Score=77.10 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=64.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC------CCCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW------NPPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~f 181 (352)
+.+|||+||++|.++..+++... +..+|+|+|+.+. ....++.+.++|+.+... .++...+.+
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~-~~~~v~avDl~~~----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGG-PAGRVVAVDLGPM----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTT-TEEEEEEEESSST----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred ccEEEEcCCcccceeeeeeeccc-ccceEEEEecccc----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence 58999999999999999998642 4589999999875 111345555555543210 011112689
Q ss_pred eEEEehhhhhcc---------ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 182 DIVLLIFVLDAI---------NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 182 D~V~~~~~l~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|+|+|-.+.... ...-....+.-+.+.|+|||.+++-.+.
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 999996622111 1133445566666889999999987654
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-07 Score=77.37 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=74.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+-||||.++...+.+ ....|+.||.++.++...++|++..+ .++..+..|+............+||+|+
T Consensus 43 g~~vLDLFaGSGalGlEALSR---GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSR---GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCeEEEcCCccCccHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 889999999999999988874 33489999999999999999987633 3578888886532111111367899999
Q ss_pred ehhhhhccChhH-HHHHHHHHH--HhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNK-MQHVINQVY--KYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~-~~~~l~~~~--~~LkpgG~l~~~~~~ 221 (352)
+.=-.. . .. ...++..+. .+|+++|.+++....
T Consensus 120 lDPPY~-~--~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 120 LDPPYA-K--GLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp E--STT-S--CHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred ECCCcc-c--chHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 842211 1 23 366777776 789999999997543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.9e-07 Score=78.19 Aligned_cols=107 Identities=15% Similarity=0.176 Sum_probs=77.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCC-cc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPE-SL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~-~f 181 (352)
+++||=||-|.|..+..+++.. +..++++||+++.+++.|++.+.. ..++++++..|..... ....+ +|
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~--~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l---~~~~~~~y 151 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHP--PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFL---KETQEEKY 151 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTST--T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHH---HTSSST-E
T ss_pred cCceEEEcCCChhhhhhhhhcC--CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHH---HhccCCcc
Confidence 7899999999999999998753 356899999999999999987653 2478999999986522 11234 89
Q ss_pred eEEEehhhhhccChh--HHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 182 DIVLLIFVLDAINPN--KMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+|++-..-...... --..+++.+++.|+|||++++..
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999984332111111 13578899999999999999975
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.3e-06 Score=67.78 Aligned_cols=106 Identities=25% Similarity=0.457 Sum_probs=73.1
Q ss_pred EEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCc-eEEEEecCCCCCCCCCCCC-CcceEEEehh
Q psy11741 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDR-CHAFVCDVTSEDWNPPFAP-ESLDIVLLIF 188 (352)
Q Consensus 111 vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~-~~fD~V~~~~ 188 (352)
++|+|||+|..+ .++.... .+..++|+|+++.++..++......... +.+...|.... ..++.. ..||++.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG-RGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG--VLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC-CCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC--CCCCCCCCceeEEeeee
Confidence 999999999976 3333211 2257899999999999965554321111 57777776642 144545 4899994444
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
..++.. ....+..+.+.++|+|.+++......
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 444442 78899999999999999999876543
|
|
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.6e-07 Score=82.53 Aligned_cols=108 Identities=23% Similarity=0.406 Sum_probs=88.1
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
..++..++|+|||.|.....++.. ....++|+|.++..+..+....... ..+..++.+|+. ..|+++++||
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f---~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~----~~~fedn~fd 180 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVF---KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFG----KMPFEDNTFD 180 (364)
T ss_pred CcccccccccCcCcCchhHHHHHh---ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhh----cCCCCccccC
Confidence 334668999999999999988875 6678999999998888876654431 233445777776 5678899999
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+.+..+.+|. .+...++++++++++|||+++..++.
T Consensus 181 ~v~~ld~~~~~--~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 181 GVRFLEVVCHA--PDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cEEEEeecccC--CcHHHHHHHHhcccCCCceEEeHHHH
Confidence 99999999999 88999999999999999999987643
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.1e-06 Score=69.94 Aligned_cols=104 Identities=18% Similarity=0.328 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHH----HHHHHhccccCCCceEEEEecCCCCCCCCCCCCCc
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENA----VNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPES 180 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 180 (352)
..++.+||-+|.++|....+++...+ +...|++++.|+.. +..|+++ .|+-.+..|+..+.....+ -+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg-~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DAr~P~~Y~~l-v~~ 143 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVG-PDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDARHPEKYRML-VEM 143 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-TTSGGGGTTT-S--
T ss_pred CCCCCEEEEecccCCCccchhhhccC-CCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccCCChHHhhcc-ccc
Confidence 34588999999999999999998876 56789999999954 4445444 6799999999865432223 358
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+|++.-. .+++..-++.++...||+||.+++..
T Consensus 144 VDvI~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQDVA----QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE-S----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEecCC----ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999987432 34667777888889999999999863
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.2e-07 Score=71.69 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=62.3
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
.|+|+.||.|..++.+|+ ...+|+++|+++..++.|+.|++-.+ .++.++++|+.+....+.. ...+|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~----~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~-~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFAR----TFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS-NKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHH----TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHH----hCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc-cccccEEEEC
Confidence 689999999999999999 45589999999999999999988754 6899999998863222221 1128999971
Q ss_pred -------------hhh-hccChhHHHHHHHHHHHhc
Q psy11741 188 -------------FVL-DAINPNKMQHVINQVYKYL 209 (352)
Q Consensus 188 -------------~~l-~~~~~~~~~~~l~~~~~~L 209 (352)
+-+ ..+.+-+...+++.+.++.
T Consensus 77 PPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t 112 (163)
T PF09445_consen 77 PPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT 112 (163)
T ss_dssp --BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-
T ss_pred CCCCCccccccCccCHHHccCCCCHHHHHHHHHhhC
Confidence 122 2333445666777665553
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.5e-06 Score=73.42 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=72.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+++||=+|.|.|..++.+++. +. +|+-||+++.+++.+++.+.. ..++++++.. +.+ ...++||
T Consensus 73 pk~VLIiGGGDGg~~REvLkh---~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~------~~~~~fD 141 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY---DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD------LDIKKYD 141 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc---CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh------ccCCcCC
Confidence 789999999999999999996 43 999999999999999995432 3466776652 211 1246899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|++-.. ......+.+++.|+|||+++...
T Consensus 142 VIIvDs~-------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 142 LIICLQE-------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEEcCC-------CChHHHHHHHHhcCCCcEEEECC
Confidence 9998643 11466788999999999999964
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.6e-06 Score=72.72 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=67.7
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+.+.+.+.+...- ..++..|||||+|.|.+|..|++ .+..|+++++++.+++..++... ...
T Consensus 11 nFL~d~~v~~kIv~~a~---------~~~~d~VlEIGpG~GaLT~~Ll~----~~~~v~aiEiD~~l~~~L~~~~~-~~~ 76 (259)
T COG0030 11 NFLIDKNVIDKIVEAAN---------ISPGDNVLEIGPGLGALTEPLLE----RAARVTAIEIDRRLAEVLKERFA-PYD 76 (259)
T ss_pred ccccCHHHHHHHHHhcC---------CCCCCeEEEECCCCCHHHHHHHh----hcCeEEEEEeCHHHHHHHHHhcc-ccc
Confidence 56666655444443322 23378999999999999999999 66689999999999999998875 347
Q ss_pred ceEEEEecCCCCCCCCCCCCC-cceEEEeh
Q psy11741 159 RCHAFVCDVTSEDWNPPFAPE-SLDIVLLI 187 (352)
Q Consensus 159 ~v~~~~~d~~~~~~~~~~~~~-~fD~V~~~ 187 (352)
+++.+.+|+.+.. ++.- .++.|+++
T Consensus 77 n~~vi~~DaLk~d----~~~l~~~~~vVaN 102 (259)
T COG0030 77 NLTVINGDALKFD----FPSLAQPYKVVAN 102 (259)
T ss_pred ceEEEeCchhcCc----chhhcCCCEEEEc
Confidence 8999999998643 2211 56777774
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.7e-06 Score=77.09 Aligned_cols=105 Identities=22% Similarity=0.289 Sum_probs=84.2
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
-++|-+|||.-.++..+.+. .-..|+-+|+|+..++....+.....+-+.+...|+. .+.+++++||+|+...
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~---G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~----~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN---GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMD----QLVFEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc---CCCCceeccccHHHHHHHHhccccCCcceEEEEecch----hccCCCcceeEEEecC
Confidence 38999999999888887774 3347999999999999887765444567889999998 5678899999999999
Q ss_pred hhhccC-hh-------HHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 189 VLDAIN-PN-------KMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 189 ~l~~~~-~~-------~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.++++- ++ .....+.++.++|+|||+.+..+.
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 888772 11 234678899999999999887665
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.4e-06 Score=68.49 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+++|||+|+|+|..++..++. ....|+..|+.+..+...+-|.+.++.++.+...|... ++..||+|+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a---GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-------~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA---GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-------SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh---hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-------CCcceeEEEe
Confidence 4899999999999998887775 34478999999999999999988888888999888763 3678999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCc
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 224 (352)
..+++.- ....+++.-..++...|-.+++.++++..
T Consensus 149 gDlfy~~--~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 149 GDLFYNH--TEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred eceecCc--hHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 8887643 56667777444444555566676666543
|
|
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=67.90 Aligned_cols=132 Identities=20% Similarity=0.186 Sum_probs=96.3
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
...|+.+|||-|+|+|.++.++++..+ |..+++-.|+...-.+.|++.++. .+.++++..-|++..-+ ......+
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~-ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF--~~ks~~a 178 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVA-PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF--LIKSLKA 178 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhC-cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc--ccccccc
Confidence 345699999999999999999999887 677899999999888888888776 45899999999997533 2336789
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHH
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 261 (352)
|.|+.. ...+..++-.++.+||.+|.-++. +.+ .. -..+.-.+.+
T Consensus 179 DaVFLD-------lPaPw~AiPha~~~lk~~g~r~cs-FSP-CI--------------------------EQvqrtce~l 223 (314)
T KOG2915|consen 179 DAVFLD-------LPAPWEAIPHAAKILKDEGGRLCS-FSP-CI--------------------------EQVQRTCEAL 223 (314)
T ss_pred ceEEEc-------CCChhhhhhhhHHHhhhcCceEEe-ccH-HH--------------------------HHHHHHHHHH
Confidence 999863 245556667777788887753332 111 11 1133456678
Q ss_pred HhCCCceEEeee
Q psy11741 262 ESAGFVEKQNLI 273 (352)
Q Consensus 262 ~~~Gf~~~~~~~ 273 (352)
.++||..+....
T Consensus 224 ~~~gf~~i~~vE 235 (314)
T KOG2915|consen 224 RSLGFIEIETVE 235 (314)
T ss_pred HhCCCceEEEEE
Confidence 889998877643
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-06 Score=74.34 Aligned_cols=172 Identities=17% Similarity=0.226 Sum_probs=97.3
Q ss_pred cchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccc--cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-C
Q psy11741 82 KDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGN--SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-D 158 (352)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~--~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~ 158 (352)
.++.++.+....+.... .-...||||||--. .+-.+++... |..+|+-+|..|..+..++..+.... .
T Consensus 51 ~nR~Fl~RaVr~la~~~--------GIrQFLDlGsGlPT~~nvHevAq~~~-P~aRVVYVD~DPvv~ah~ralL~~~~~g 121 (267)
T PF04672_consen 51 ANRAFLRRAVRYLAEEA--------GIRQFLDLGSGLPTAGNVHEVAQRVA-PDARVVYVDNDPVVLAHARALLADNPRG 121 (267)
T ss_dssp HHHHHHHHHHHHHHCTT-----------EEEEET--S--SS-HHHHHHHH--TT-EEEEEESSHHHHHCCHHHHTT-TTS
T ss_pred HHHHHHHHHHHHHHHhc--------CcceEEEcccCCCCCCCHhHHHHhhC-CCceEEEECCCchHHHHHHhhhcCCCCc
Confidence 34566666666666542 14579999999653 5566666654 89999999999999999988766542 2
Q ss_pred ceEEEEecCCCCCCCCC-------CCCCcceEEEehhhhhccCh-hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhh
Q psy11741 159 RCHAFVCDVTSEDWNPP-------FAPESLDIVLLIFVLDAINP-NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF 230 (352)
Q Consensus 159 ~v~~~~~d~~~~~~~~~-------~~~~~fD~V~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 230 (352)
...++++|+.+...-+. +.-.+-=.|++..++||+++ +++..+++.++..|.||.+|+++..+........
T Consensus 122 ~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~- 200 (267)
T PF04672_consen 122 RTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERA- 200 (267)
T ss_dssp EEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHH-
T ss_pred cEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHH-
Confidence 37899999987431111 11122235677789999954 7899999999999999999999876543211110
Q ss_pred hcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEE
Q psy11741 231 KKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQ 270 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~ 270 (352)
.. + ...+. ..+....+.+.+++..+|. ||+.++
T Consensus 201 ~~---~-~~~~~-~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 201 EA---L-EAVYA-QAGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp HH---H-HHHHH-HCCS----B-HHHHHHCCT--TSEE-T
T ss_pred HH---H-HHHHH-cCCCCceecCHHHHHHHcC--CCccCC
Confidence 00 0 01111 1234445678999999887 887765
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.2e-06 Score=68.48 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC----CCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN----PPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~----~~~~~~~fD 182 (352)
++..|+|+||..|.++..+++... ++..|+|+|+.|- ...+++.++++|++..... ..+....+|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~-~~~~ivavDi~p~----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLG-AGGKIVAVDILPM----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhC-CCCcEEEEECccc----------ccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 378999999999999999998875 5556999999763 1225699999999875421 112344579
Q ss_pred EEEehhh--------hhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 183 IVLLIFV--------LDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~--------l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+|++-.. .+|. ...-...++.-+..+|+|||.+++-.+.
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 9997332 1222 1122334556667899999999997653
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-05 Score=66.01 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=88.1
Q ss_pred EEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCc-ceEEEeh
Q psy11741 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPES-LDIVLLI 187 (352)
Q Consensus 111 vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~-fD~V~~~ 187 (352)
|.||||--|.+...|++.. ...+++++|+++..++.|+++....+ .++.+..+|-.+ .+ +.+. .|.|+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~--~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~---~l--~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG--KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE---VL--KPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTT--SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG---G----GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc---cc--CCCCCCCEEEEe
Confidence 6899999999999999964 45589999999999999999987643 679999999654 22 2333 7888876
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+ ...-...+|......++....|++.-. .....++.++.+.||.
T Consensus 74 GM----GG~lI~~ILe~~~~~~~~~~~lILqP~-------------------------------~~~~~LR~~L~~~gf~ 118 (205)
T PF04816_consen 74 GM----GGELIIEILEAGPEKLSSAKRLILQPN-------------------------------THAYELRRWLYENGFE 118 (205)
T ss_dssp EE-----HHHHHHHHHHTGGGGTT--EEEEEES-------------------------------S-HHHHHHHHHHTTEE
T ss_pred cC----CHHHHHHHHHhhHHHhccCCeEEEeCC-------------------------------CChHHHHHHHHHCCCE
Confidence 64 335667888888887777667887522 2467899999999999
Q ss_pred eEEeee
Q psy11741 268 EKQNLI 273 (352)
Q Consensus 268 ~~~~~~ 273 (352)
+++...
T Consensus 119 I~~E~l 124 (205)
T PF04816_consen 119 IIDEDL 124 (205)
T ss_dssp EEEEEE
T ss_pred EEEeEE
Confidence 988754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.9e-06 Score=66.71 Aligned_cols=105 Identities=12% Similarity=0.129 Sum_probs=81.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+||+||-|-|.....+-++ +..+-+.|+..+..++..+...-....||....+--.+.. ..++++.||-|+.
T Consensus 101 kggrvLnVGFGMgIidT~iQe~---~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl--~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEA---PPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVL--NTLPDKHFDGIYY 175 (271)
T ss_pred CCceEEEeccchHHHHHHHhhc---CCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhh--ccccccCcceeEe
Confidence 4899999999999888777665 4445677899999999998876555577777766444321 1245888999997
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
--.-.+. ++...+.+.+.++|||+|++-..
T Consensus 176 DTy~e~y--Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 176 DTYSELY--EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred echhhHH--HHHHHHHHHHhhhcCCCceEEEe
Confidence 6554555 89999999999999999998764
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.6e-06 Score=75.98 Aligned_cols=102 Identities=23% Similarity=0.244 Sum_probs=75.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+=||.|.+++.+|+ ...+|+|+|+++.+++.|+++++.++ .|+.|..+|+.+...... ....+|.|+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~----~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-~~~~~d~Vv 367 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAK----RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-EGYKPDVVV 367 (432)
T ss_pred CCCEEEEeccCCChhhhhhcc----cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-ccCCCCEEE
Confidence 467999999999999999997 66799999999999999999988754 669999999886432111 235789998
Q ss_pred ehhhhhccChhHHH-HHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQ-HVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~-~~l~~~~~~LkpgG~l~~~~ 219 (352)
..= +..-.. .+++.+.+ ++|..++++++
T Consensus 368 vDP-----PR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 368 VDP-----PRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred ECC-----CCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence 721 111122 34444444 57888888864
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.4e-06 Score=66.69 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=79.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
...+.|+|+|+|.++...+. ..-+|++++.+|.-.+.|.++..-. ..+++.+.+|+... .+ ...|+|+|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~----~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y----~f--e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAH----AAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY----DF--ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHh----hhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc----cc--cccceeHH
Confidence 46799999999999887777 4448999999999999999997543 37899999999843 23 46799998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
-..-..+-.+.+..+++.+.+.||.+|.++-.
T Consensus 103 EmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 103 EMLDTALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred HHhhHHhhcccccHHHHHHHHHhhcCCccccH
Confidence 54322233367788999999999999988754
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=66.04 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCC--cce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPE--SLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~--~fD 182 (352)
.+.++||+-+|||.++...+.+ ....++.||.+..++...++|.+..+ .++..+..|+.. .++.... .||
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR---GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~---~L~~~~~~~~FD 116 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR---GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR---ALKQLGTREPFD 116 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH---HHHhcCCCCccc
Confidence 3899999999999999998885 44589999999999999999987655 778888998873 2222223 499
Q ss_pred EEEehhhhhccChhHHHHHHHH--HHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQ--VYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~ 220 (352)
+|+.-=-.+ ...-+....+.. -...|+|+|.+++...
T Consensus 117 lVflDPPy~-~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 117 LVFLDPPYA-KGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred EEEeCCCCc-cchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 999832222 100111222333 4467999999999643
|
|
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.5e-06 Score=69.57 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=60.8
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
..++..|||||.|||.++..|.+ .+.+|+++++++.|+....++....+ ....+..+|+.+. +...||
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe----~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~------d~P~fd 125 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLE----AGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT------DLPRFD 125 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHH----hcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC------CCcccc
Confidence 34578999999999999999999 77899999999999999999887644 6788999998753 124689
Q ss_pred EEEe
Q psy11741 183 IVLL 186 (352)
Q Consensus 183 ~V~~ 186 (352)
.+++
T Consensus 126 ~cVs 129 (315)
T KOG0820|consen 126 GCVS 129 (315)
T ss_pred eeec
Confidence 9888
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-05 Score=71.82 Aligned_cols=127 Identities=18% Similarity=0.278 Sum_probs=77.2
Q ss_pred chhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcC-----CCCeEEEEEeCCHHHHHHHHhccccCC
Q psy11741 83 DRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCK-----NDNVFVYGCDFSENAVNILKEHEEYKP 157 (352)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~ 157 (352)
....+...+..++.. .++.+|+|.+||+|.++..+.+.+. ....+++|+|+++.++..|+.+..-.+
T Consensus 30 TP~~i~~l~~~~~~~--------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 30 TPREIVDLMVKLLNP--------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp --HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhc--------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 334455555555532 2367899999999999988876431 156799999999999999987653222
Q ss_pred ---CceEEEEecCCCCCCCCCC-CCCcceEEEehhhhhcc------------------C-hhHHHHHHHHHHHhcCCCEE
Q psy11741 158 ---DRCHAFVCDVTSEDWNPPF-APESLDIVLLIFVLDAI------------------N-PNKMQHVINQVYKYLKPGGM 214 (352)
Q Consensus 158 ---~~v~~~~~d~~~~~~~~~~-~~~~fD~V~~~~~l~~~------------------~-~~~~~~~l~~~~~~LkpgG~ 214 (352)
.+......|..... .. ....||+|+++--+... + ...-..++..+.+.|++||+
T Consensus 102 ~~~~~~~i~~~d~l~~~---~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~ 178 (311)
T PF02384_consen 102 IDNSNINIIQGDSLEND---KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGR 178 (311)
T ss_dssp HHCBGCEEEES-TTTSH---SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEE
T ss_pred ccccccccccccccccc---ccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccc
Confidence 23457778865421 12 24789999994211111 0 01223578889999999999
Q ss_pred EEEEeC
Q psy11741 215 VLFRDY 220 (352)
Q Consensus 215 l~~~~~ 220 (352)
+.+..+
T Consensus 179 ~~~Ilp 184 (311)
T PF02384_consen 179 AAIILP 184 (311)
T ss_dssp EEEEEE
T ss_pred eeEEec
Confidence 777643
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.3e-05 Score=69.52 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=94.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+|.+|||.=||.|.+++.+|... ...|+++|++|.+++..+++++.++ ..+..+++|+.... ...+.+|-|
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g---~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~----~~~~~aDrI 260 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKG---RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA----PELGVADRI 260 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcC---CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh----hccccCCEE
Confidence 38899999999999999999953 2349999999999999999987643 44889999998532 222789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++... .....++..+.+.+++||++...+..+.+.. .......+.....+.
T Consensus 261 im~~p------~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~-----------------------~~~~~~~i~~~~~~~ 311 (341)
T COG2520 261 IMGLP------KSAHEFLPLALELLKDGGIIHYYEFVPEDDI-----------------------EERPEKRIKSAARKG 311 (341)
T ss_pred EeCCC------CcchhhHHHHHHHhhcCcEEEEEeccchhhc-----------------------ccchHHHHHHHHhhc
Confidence 98643 3445667778888899999998876543210 002356677777778
Q ss_pred CCceEEe
Q psy11741 265 GFVEKQN 271 (352)
Q Consensus 265 Gf~~~~~ 271 (352)
|+++...
T Consensus 312 ~~~~~v~ 318 (341)
T COG2520 312 GYKVEVL 318 (341)
T ss_pred cCcceEE
Confidence 7754433
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.5e-06 Score=75.80 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=77.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+.||+|..++.++.+.. ....|+++|+++.+++.+++|++..+ .++.+.+.|+... +.....+||+|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~-ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~---l~~~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE-GVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV---LRYRNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH---HHHhCCCCCEEEe
Confidence 35899999999999999998641 12489999999999999999987643 3578888888742 2112357999987
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.- + .....++..+.+.+++||+|+++
T Consensus 121 DP-f-----Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 121 DP-F-----GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CC-C-----CCcHHHHHHHHHhcccCCEEEEE
Confidence 42 1 23346888889999999999997
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.2e-05 Score=78.73 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcC----------------------------------------CCCeEEEEEeCCHHHH
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCK----------------------------------------NDNVFVYGCDFSENAV 146 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~----------------------------------------~~~~~v~gvD~s~~~l 146 (352)
++..++|.+||+|++.+..+.... ....+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 467899999999999988765310 0123699999999999
Q ss_pred HHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhh-cc-ChhHHHHHHHHHHHhc---CCCEEEEEEe
Q psy11741 147 NILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLD-AI-NPNKMQHVINQVYKYL---KPGGMVLFRD 219 (352)
Q Consensus 147 ~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~-~~-~~~~~~~~l~~~~~~L---kpgG~l~~~~ 219 (352)
+.|++|+...+ ..+.+.++|+.+. ..+...++||+|+++--.. .+ ...+...+.+.+.+.+ .+|+.+++.+
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~--~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADL--KNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhc--ccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 99999987654 4588999998753 1222245799999963221 11 2234445545544444 4888887765
Q ss_pred CC
Q psy11741 220 YG 221 (352)
Q Consensus 220 ~~ 221 (352)
..
T Consensus 348 ~~ 349 (702)
T PRK11783 348 SS 349 (702)
T ss_pred CC
Confidence 43
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=73.96 Aligned_cols=57 Identities=25% Similarity=0.439 Sum_probs=45.6
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTS 169 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~ 169 (352)
.+|||+-||.|.++..+|. ...+|+|+|+++.+++.|++++...+ .|++|..+++.+
T Consensus 198 ~~vlDlycG~G~fsl~la~----~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAK----KAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHC----CSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHh----hCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 3899999999999999999 55689999999999999999988754 689999887653
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.6e-05 Score=75.93 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=54.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC------CCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCC-CCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN------DNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNP-PFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~------~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~-~~~~~ 179 (352)
..+|||.|||+|.++..++..+.. ...+++|+|+++.++..|+.++...+ ..+.....|........ ....+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 568999999999999998876621 12578999999999999988865432 23444555543221111 11135
Q ss_pred cceEEEeh
Q psy11741 180 SLDIVLLI 187 (352)
Q Consensus 180 ~fD~V~~~ 187 (352)
.||+|+++
T Consensus 112 ~fD~IIgN 119 (524)
T TIGR02987 112 LFDIVITN 119 (524)
T ss_pred cccEEEeC
Confidence 79999983
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=59.70 Aligned_cols=143 Identities=22% Similarity=0.181 Sum_probs=87.2
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH----------HHHHHHhccccCCCceEEEEecCCCCCCCC
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN----------AVNILKEHEEYKPDRCHAFVCDVTSEDWNP 174 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----------~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 174 (352)
..++.+|+|+-.|.|.++..++...+ +...|+++=..+. +-..+++... .|++.+-.+.. .+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vg-p~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~---aN~e~~~~~~~----A~ 117 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVG-PKGKVYAYVPAELTKFAKREGPRLNAAAREPVY---ANVEVIGKPLV----AL 117 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcC-CceeEEEecchhhcccccchhhhhhhhhhhhhh---hhhhhhCCccc----cc
Confidence 44589999999999999999999887 4447777644332 1111211111 22222222222 12
Q ss_pred CCCCCcceEEEehhhhhc-----cChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeee
Q psy11741 175 PFAPESLDIVLLIFVLDA-----INPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLV 249 (352)
Q Consensus 175 ~~~~~~fD~V~~~~~l~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (352)
. +.+..|++.....-|. +.+....++...+++.|||||++++.++... .+..+ .+....
T Consensus 118 ~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~--------pG~~~-------~dt~~~ 181 (238)
T COG4798 118 G-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRAD--------PGSGL-------SDTITL 181 (238)
T ss_pred C-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecccc--------CCCCh-------hhhhhh
Confidence 2 2344555555332221 2356788899999999999999999876532 11111 111223
Q ss_pred eccCHHHHHHHHHhCCCceEEe
Q psy11741 250 YFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 250 ~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
+..+..-+....+.+||.....
T Consensus 182 ~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 182 HRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred cccChHHHHHHHHhhcceeeee
Confidence 4578888999999999987654
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.3e-06 Score=64.49 Aligned_cols=101 Identities=21% Similarity=0.264 Sum_probs=43.9
Q ss_pred EEEcCCccccHHHHHhhcCCCC-eEEEEEeCCHH---HHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 112 LEIGCGVGNSVFPIVEHCKNDN-VFVYGCDFSEN---AVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 112 LD~GcG~G~~~~~l~~~~~~~~-~~v~gvD~s~~---~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
||+|+..|..+..+++.++..+ .+++++|..+. .-+..++ .....+++++.++..+... .++.++||+|+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~l~--~~~~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDFLP--SLPDGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHH--HHHH--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHHHH--HcCCCCEEEEEEC
Confidence 6899999999999988775222 37999999994 3333332 1123569999998754211 1224789999985
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.. |. .+.....++.+.+.|+|||++++.+
T Consensus 77 g~-H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 77 GD-HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp S------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC-CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 42 22 2667788899999999999999875
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.4e-05 Score=71.03 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=83.2
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+.++.+|||+++|.|.-+..++.... ....+++.|+++.-+...+.+....+ .++.....|..... .......||.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~-~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~--~~~~~~~fd~ 159 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMG-NKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLD--PKKPESKFDR 159 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTT-TTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHH--HHHHTTTEEE
T ss_pred ccccccccccccCCCCceeeeeeccc-chhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccc--ccccccccch
Confidence 34588999999999999999999875 35689999999999999988887654 56777777776421 0112346999
Q ss_pred EEeh------hhhhcc-------Ch-------hHHHHHHHHHHHhc----CCCEEEEEEeCC
Q psy11741 184 VLLI------FVLDAI-------NP-------NKMQHVINQVYKYL----KPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~------~~l~~~-------~~-------~~~~~~l~~~~~~L----kpgG~l~~~~~~ 221 (352)
|++- .++..- ++ .-+..+|+.+.+.+ ||||+++-++.+
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 9981 111111 01 13557899999999 999999998765
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.3e-05 Score=63.35 Aligned_cols=105 Identities=18% Similarity=0.251 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc-------c---CCCceEEEEecCCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-------Y---KPDRCHAFVCDVTSEDWNPPF 176 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-------~---~~~~v~~~~~d~~~~~~~~~~ 176 (352)
++...+|||||.|......+... +-.+.+||++.+...+.|+.... . ....+.+..+|+.+... ...
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~--~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~-~~~ 118 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQT--GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF-VKD 118 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH----SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH-HHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHc--CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh-Hhh
Confidence 47789999999999988777654 33459999999988877765321 1 23567788888764210 000
Q ss_pred CCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 177 APESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 177 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
.-...|+|++++... + ++....|.++...||+|.+++-
T Consensus 119 ~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 119 IWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred hhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEE
Confidence 003469999987642 3 4666677888888999977664
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00025 Score=59.88 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=81.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCC--CeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKND--NVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+...+|+|+|+..-+..|...+... -.+++.+|+|...++...+.+.. .+..+.-+++|.......+| ..++==+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl~ 157 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRLF 157 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEEE
Confidence 6789999999999998888877422 25899999999988765444332 33456667788765332333 2233334
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++...++..+++++...+|.+++..|+||-++++..
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 555678999999999999999999999999998864
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.5e-05 Score=66.22 Aligned_cols=106 Identities=15% Similarity=0.240 Sum_probs=65.2
Q ss_pred CCeEEEEcCCccccHHHH-HhhcCCCCeEEEEEeCCHHHHHHHHhcccc---CCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPI-VEHCKNDNVFVYGCDFSENAVNILKEHEEY---KPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l-~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+.+|+=||||.=-++..+ ++... .+..++++|+++.+++.+++.... .+.++.|..+|+.+. +..-..||+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~-~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~----~~dl~~~Dv 195 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHG-PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDV----TYDLKEYDV 195 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HT-T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-----GG----SE
T ss_pred cceEEEEcCCCcchHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcc----ccccccCCE
Confidence 569999999986655444 43322 577899999999999999887662 347799999998742 222358999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+...... ++.++-.+++.++.+.++||..+++..
T Consensus 196 V~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 99866543 234677899999999999999988863
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.3e-05 Score=69.26 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=51.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTS 169 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~ 169 (352)
.+..+||+.||||.+++.+++ +...|+|+++++.+++-|+.++..++ .|.+|+++-+.+
T Consensus 383 ~~k~llDv~CGTG~iglala~----~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALAR----GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCcEEEEEeecCCceehhhhc----cccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 467899999999999999999 56689999999999999999988754 789999995544
|
|
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.9e-05 Score=62.03 Aligned_cols=130 Identities=17% Similarity=0.183 Sum_probs=86.9
Q ss_pred CCeEEEEcCCccccHHH-HHhhcCCCCeEEEEEeCCHHHHHHHHhccccC----CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFP-IVEHCKNDNVFVYGCDFSENAVNILKEHEEYK----PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~-l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+||++|.|--.++-. +|... +...|...|-++..++..++..... ..++.....+.... .......+||
T Consensus 30 g~~ilelgggft~laglmia~~a--~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a--qsq~eq~tFD 105 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKA--PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA--QSQQEQHTFD 105 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeec--CCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh--HHHHhhCccc
Confidence 67899999996555443 34433 7778999999999988876643221 12222222222111 1112245899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
+|++..++.+- +....+.+.|..+|+|.|..++..+.+. -+.+.+.+...
T Consensus 106 iIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~fsPRRg----------------------------~sL~kF~de~~ 155 (201)
T KOG3201|consen 106 IILAADCLFFD--EHHESLVDTIKSLLRPSGRALLFSPRRG----------------------------QSLQKFLDEVG 155 (201)
T ss_pred EEEeccchhHH--HHHHHHHHHHHHHhCcccceeEecCccc----------------------------chHHHHHHHHH
Confidence 99999887654 6777888999999999999777543221 45777888888
Q ss_pred hCCCceEEe
Q psy11741 263 SAGFVEKQN 271 (352)
Q Consensus 263 ~~Gf~~~~~ 271 (352)
..||.+.-.
T Consensus 156 ~~gf~v~l~ 164 (201)
T KOG3201|consen 156 TVGFTVCLE 164 (201)
T ss_pred hceeEEEec
Confidence 899887643
|
|
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.5e-06 Score=67.67 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=72.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
...|+|.-||.|..+...+. .+..|+++|++|.-+..|+.+++-. +.+|+|+++|+.+....+.+....+|+|+
T Consensus 95 ~~~iidaf~g~gGntiqfa~----~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFAL----QGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred cchhhhhhhcCCchHHHHHH----hCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 56799999999999999988 6678999999999999999998864 36899999999764333444444566777
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGM 214 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 214 (352)
.+--.. .+.....-+-.+..+++|.|.
T Consensus 171 ~sppwg--gp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 171 LSPPWG--GPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred cCCCCC--CcchhhhhhhhhhhhcchhHH
Confidence 643322 234445555555556666543
|
|
| >KOG2798|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00026 Score=61.84 Aligned_cols=146 Identities=19% Similarity=0.254 Sum_probs=89.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcc---cc----------------------------
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE---EY---------------------------- 155 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~---~~---------------------------- 155 (352)
...+||--|||.|+++..|+. .|..+-|-+.|--|+=...=-+ +.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~----~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~ 225 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLAC----LGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISI 225 (369)
T ss_pred cCceEEecCCCchhHHHHHHH----hcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccC
Confidence 367899999999999999999 6667777788776654322110 00
Q ss_pred --------CC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCch
Q psy11741 156 --------KP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225 (352)
Q Consensus 156 --------~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 225 (352)
.+ .......+|+.+-- ..+-..+.||+|+..+.+... .+....|..|..+|||||+-+=.-+-...
T Consensus 226 PD~~p~~~~~~~~~fsicaGDF~evy-~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLlYH- 301 (369)
T KOG2798|consen 226 PDIHPASSNGNTGSFSICAGDFLEVY-GTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLLYH- 301 (369)
T ss_pred ccccccccCCCCCCccccccceeEEe-cCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccceeee-
Confidence 00 00111223333210 111123579999988777655 78899999999999999986643211100
Q ss_pred hhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 226 VQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
+....-. ......-++.+++..+....||+++...
T Consensus 302 ----F~d~~g~--------~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 302 ----FEDTHGV--------ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred ----ccCCCCC--------cccccccccHHHHHHHHHhcCcEEEEee
Confidence 0000000 0011223789999999999999998764
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=66.83 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=76.3
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCC--CC----------------------------e-------EEEEEeCCHHHH
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKN--DN----------------------------V-------FVYGCDFSENAV 146 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~--~~----------------------------~-------~v~gvD~s~~~l 146 (352)
+..++..++|.=||+|++++..|....+ || . .++|+|+++.++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 4555678999999999999887775421 11 1 377999999999
Q ss_pred HHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhh-cc-ChhH----HHHHHHHHHHhcCCCEEEEEE
Q psy11741 147 NILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLD-AI-NPNK----MQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 147 ~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~-~~-~~~~----~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+.|+.|+...+ ..|+|.++|+... +-+.+.+|+|+|+--.. -+ +... ...+.+.+++.++-.+.+++.
T Consensus 268 ~~Ak~NA~~AGv~d~I~f~~~d~~~l----~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 268 EGAKANARAAGVGDLIEFKQADATDL----KEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHHHhcCCCceEEEEEcchhhC----CCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 99999988754 5699999999853 22226899999953211 11 1122 223444555666666777775
Q ss_pred e
Q psy11741 219 D 219 (352)
Q Consensus 219 ~ 219 (352)
.
T Consensus 344 t 344 (381)
T COG0116 344 T 344 (381)
T ss_pred c
Confidence 3
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=65.85 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.++||+||++|.++..+++ .|.+|++||.++ |-.... ..++|.....|.... .| +.+.+|+++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~----rG~~V~AVD~g~-l~~~L~-----~~~~V~h~~~d~fr~---~p-~~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVR----RGMFVTAVDNGP-MAQSLM-----DTGQVEHLRADGFKF---RP-PRKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHH----cCCEEEEEechh-cCHhhh-----CCCCEEEEeccCccc---CC-CCCCCCEEE
Confidence 4588999999999999999999 677999999665 222211 236788888887642 22 157899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPG 212 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~Lkpg 212 (352)
|-.+ +.+.++++-+.+.|..|
T Consensus 276 cDmv------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 276 CDMV------EKPARVAELMAQWLVNG 296 (357)
T ss_pred Eecc------cCHHHHHHHHHHHHhcC
Confidence 8654 45567778888888766
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.7e-05 Score=59.98 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcC--CCCeEEEEEeCCHHHHHHHHhccccCC----CceEEEEecCCCCCCCCCCCCCc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCK--NDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFVCDVTSEDWNPPFAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~ 180 (352)
+...|+|+|||.|.++..++..+. .++.+|+|+|.++..++.+.++.+... .++.+..+++.... ....
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 99 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-----SSDP 99 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-----ccCC
Confidence 477999999999999999998331 177899999999999999988765432 34555555544211 1456
Q ss_pred ceEEEehhhhhccC
Q psy11741 181 LDIVLLIFVLDAIN 194 (352)
Q Consensus 181 fD~V~~~~~l~~~~ 194 (352)
.++++....-..++
T Consensus 100 ~~~~vgLHaCG~Ls 113 (141)
T PF13679_consen 100 PDILVGLHACGDLS 113 (141)
T ss_pred CeEEEEeecccchH
Confidence 78888876665553
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00018 Score=63.52 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=58.9
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+.......+..+-.. ++..|||+|+|.|.++..|++. +.+++++|+++.+++..+++.. ...
T Consensus 11 nFL~~~~~~~~Iv~~~~~~---------~~~~VlEiGpG~G~lT~~L~~~----~~~v~~vE~d~~~~~~L~~~~~-~~~ 76 (262)
T PF00398_consen 11 NFLVDPNIADKIVDALDLS---------EGDTVLEIGPGPGALTRELLKR----GKRVIAVEIDPDLAKHLKERFA-SNP 76 (262)
T ss_dssp SEEEHHHHHHHHHHHHTCG---------TTSEEEEESSTTSCCHHHHHHH----SSEEEEEESSHHHHHHHHHHCT-TCS
T ss_pred CeeCCHHHHHHHHHhcCCC---------CCCEEEEeCCCCccchhhHhcc----cCcceeecCcHhHHHHHHHHhh-hcc
Confidence 5555655444444433222 3789999999999999999985 3689999999999999998765 457
Q ss_pred ceEEEEecCCC
Q psy11741 159 RCHAFVCDVTS 169 (352)
Q Consensus 159 ~v~~~~~d~~~ 169 (352)
+++++.+|+..
T Consensus 77 ~~~vi~~D~l~ 87 (262)
T PF00398_consen 77 NVEVINGDFLK 87 (262)
T ss_dssp SEEEEES-TTT
T ss_pred cceeeecchhc
Confidence 89999999985
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00014 Score=58.82 Aligned_cols=105 Identities=19% Similarity=0.267 Sum_probs=67.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEe-cCCCCCCC----CCCCCCcc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC-DVTSEDWN----PPFAPESL 181 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~-d~~~~~~~----~~~~~~~f 181 (352)
|+.+|||+||..|.++.-..+... |...|.|||+-. +. ....+.++++ |++++... ..+++...
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~-p~g~v~gVDllh---------~~-p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVN-PNGMVLGVDLLH---------IE-PPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhC-CCceEEEEeeee---------cc-CCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 488999999999999988877765 777899999843 21 1234556665 77764321 12357889
Q ss_pred eEEEehhhhhc--cChhHHHH-------HHHHHHHhcCCCEEEEEEeCCC
Q psy11741 182 DIVLLIFVLDA--INPNKMQH-------VINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 182 D~V~~~~~l~~--~~~~~~~~-------~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|+|++-..-.. +..-|... ++.-....++|+|.+++-.+..
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 99998432110 01122223 3333445678999999976654
|
|
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=9.4e-05 Score=60.52 Aligned_cols=109 Identities=14% Similarity=0.248 Sum_probs=65.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--------CCCceEEEEecCCCCCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--------KPDRCHAFVCDVTSEDWNPPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~v~~~~~d~~~~~~~~~~~~~ 179 (352)
...+.|||||-|.++..|+..+ |..-++|.+|--..-+..+.++.. .-.|+.....+.....-.+ +..+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f--PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~-f~kg 137 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF--PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNF-FEKG 137 (249)
T ss_pred cceEEeeccCccchhhhccccC--ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccch-hhhc
Confidence 4568999999999999999988 888899999877766666655432 1245666666654321000 1122
Q ss_pred cceEEEehhhhhcc-Ch-----hHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDAI-NP-----NKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~~-~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+.+-.+..+---|+ .. --...++.+..-+|++||.++..+
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22222211111111 00 012256778888999999988753
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00027 Score=57.95 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=78.1
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
..++.+||=+|..+|....+++.-. +...++|++.|+.+....-..+.. .+|+-.+..|+..+.....+ -+..|+|
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv--~~G~iYaVEfs~R~~reLl~~a~~-R~Ni~PIL~DA~~P~~Y~~~-Ve~VDvi 149 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIV--GEGRIYAVEFSPRPMRELLDVAEK-RPNIIPILEDARKPEKYRHL-VEKVDVI 149 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhcc--CCCcEEEEEecchhHHHHHHHHHh-CCCceeeecccCCcHHhhhh-cccccEE
Confidence 4458999999999999999999987 456899999999876655444332 36788899999864321122 3568998
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+.--. .+++..-+..++...||+||.+++.
T Consensus 150 y~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 150 YQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 86321 4456666778889999999987775
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00027 Score=63.06 Aligned_cols=105 Identities=11% Similarity=0.178 Sum_probs=77.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCC-CeEEEEEeCCHHHHHHHHhcc--c------cCCCceEEEEecCCCCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKND-NVFVYGCDFSENAVNILKEHE--E------YKPDRCHAFVCDVTSEDWNPPFAP 178 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~-~~~v~gvD~s~~~l~~a~~~~--~------~~~~~v~~~~~d~~~~~~~~~~~~ 178 (352)
..+||-+|.|.|.-++.+.+. | -.+++-+|++|.|++.++++. . ...++++.+..|+.+ .+.-..
T Consensus 290 a~~vLvlGGGDGLAlRellky---P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~---wlr~a~ 363 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKY---PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ---WLRTAA 363 (508)
T ss_pred cceEEEEcCCchHHHHHHHhC---CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH---HHHhhc
Confidence 568999999999999998886 5 568999999999999998442 1 134788999999875 233335
Q ss_pred CcceEEEehh------hhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 179 ESLDIVLLIF------VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 179 ~~fD~V~~~~------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+.||+||... ++.-+ .-..+...+++.|+++|.++++.-.
T Consensus 364 ~~fD~vIVDl~DP~tps~~rl---YS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 364 DMFDVVIVDLPDPSTPSIGRL---YSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred ccccEEEEeCCCCCCcchhhh---hhHHHHHHHHHhcCcCceEEEecCC
Confidence 6899999732 22211 2235667788999999999997543
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00039 Score=58.76 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCce-EEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC-HAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++..+||+|+.||.++..+++. ....|+|+|..-..+..--++ .+++ .+...|+.... ...+ .+..|+++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~---gAk~VyavDVG~~Ql~~kLR~----d~rV~~~E~tN~r~l~-~~~~-~~~~d~~v 149 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR---GAKHVYAVDVGYGQLHWKLRN----DPRVIVLERTNVRYLT-PEDF-TEKPDLIV 149 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc---CCcEEEEEEccCCccCHhHhc----CCcEEEEecCChhhCC-HHHc-ccCCCeEE
Confidence 4889999999999999999885 345899999988766544332 2333 33445555321 1112 23678998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCc-cccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGR-CLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
|--++- .+..+|..+..+++|+|.++...-.. |..+. .+...-....+ ..+..-..++.+++.+.
T Consensus 150 ~DvSFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQ-------FEagr~~v~kkGvv~d~--~~~~~v~~~i~~~~~~~ 215 (245)
T COG1189 150 IDVSFI-----SLKLILPALLLLLKDGGDLVLLVKPQ-------FEAGREQVGKKGVVRDP--KLHAEVLSKIENFAKEL 215 (245)
T ss_pred EEeehh-----hHHHHHHHHHHhcCCCceEEEEecch-------hhhhhhhcCcCceecCc--chHHHHHHHHHHHHhhc
Confidence 865543 44678888999999999877643211 11111 11100001111 11223467788889999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||.+.....
T Consensus 216 g~~~~gl~~ 224 (245)
T COG1189 216 GFQVKGLIK 224 (245)
T ss_pred CcEEeeeEc
Confidence 999987743
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00043 Score=63.59 Aligned_cols=112 Identities=17% Similarity=0.280 Sum_probs=66.0
Q ss_pred CCeEEEEcCCccccHHHHHhhc-------------CCCCeEEEEEeCCHHHHHH-HHhccc---------c----CCCce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHC-------------KNDNVFVYGCDFSENAVNI-LKEHEE---------Y----KPDRC 160 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~-------------~~~~~~v~gvD~s~~~l~~-a~~~~~---------~----~~~~v 160 (352)
..+|+|+|||+|..++.+.... ..|..+|..-|+...-... .+.... . .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 5689999999998876654321 0135677777764321111 111000 0 01111
Q ss_pred EEE---EecCCCCCCCCCCCCCcceEEEehhhhhccC--hh----------------------------------HHHHH
Q psy11741 161 HAF---VCDVTSEDWNPPFAPESLDIVLLIFVLDAIN--PN----------------------------------KMQHV 201 (352)
Q Consensus 161 ~~~---~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~--~~----------------------------------~~~~~ 201 (352)
-|. -+.+. .--+|.++.+++++.+++|+++ |+ |+..+
T Consensus 144 ~f~~gvpGSFY----~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~F 219 (386)
T PLN02668 144 YFAAGVPGSFY----RRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGF 219 (386)
T ss_pred eEEEecCcccc----ccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHH
Confidence 122 12222 2236789999999999999995 11 23345
Q ss_pred HHHHHHhcCCCEEEEEEeCCCC
Q psy11741 202 INQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 202 l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
|+.=++-|.|||.+++...++.
T Consensus 220 L~~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 220 LRARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHHHHhccCcEEEEEEecCC
Confidence 5555677899999999887764
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.68 E-value=9.5e-05 Score=58.76 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=48.1
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCC
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTS 169 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~ 169 (352)
.|||+|||.|..+..++... +..+++++|+++.+.+.++++....+ .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~--~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG--AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC--CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 38999999999999998865 66689999999999999999876532 458888877764
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00039 Score=63.25 Aligned_cols=116 Identities=20% Similarity=0.214 Sum_probs=83.5
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
.+.++.+|||+++..|.-+.++|..+.+ ...|++.|.+..-+.....++...+ .+......|..+... -.++ ++||
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn-~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~-~~~~-~~fD 314 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKN-TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPE-KEFP-GSFD 314 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcC-CceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccc-cccC-cccc
Confidence 6778999999999999999999988763 4479999999999999988887655 455556677654321 1133 3899
Q ss_pred EEEehh------hhh------cc--------ChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 183 IVLLIF------VLD------AI--------NPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 183 ~V~~~~------~l~------~~--------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
-|+.-. ++. .. -..-++++|..+..++++||+|+-++.+.
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 998621 110 00 00235678888999999999999987654
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=64.04 Aligned_cols=115 Identities=17% Similarity=0.281 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..+++|||+|.|.|.-+.++-.-+ |.. .++.++.|+..-++........ .........|++....+++. ...|++
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~--Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl 188 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIW--PDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTL 188 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccC--CCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeeh
Confidence 346789999999998776665555 332 5677788886655554433221 12233344455543334442 356777
Q ss_pred EEehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 184 VLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 184 V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
|+...-+-+. +...+...++.+..++.|||.|++.+.+.+
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 7776654444 344566689999999999999999987654
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00041 Score=59.36 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=61.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|+|||||.--++.++.... ++..++|+|++..+++....-....+.+......|+... .+....|+.+..
T Consensus 106 p~sVlDigCGlNPlalp~~~~~--~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~-----~~~~~~DlaLll 178 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEA--PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD-----PPKEPADLALLL 178 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSS--TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS-----HTTSEESEEEEE
T ss_pred CchhhhhhccCCceehhhcccC--CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc-----CCCCCcchhhHH
Confidence 6799999999998888877654 678999999999999999888776777788888998742 236789999998
Q ss_pred hhhhcc
Q psy11741 188 FVLDAI 193 (352)
Q Consensus 188 ~~l~~~ 193 (352)
-+++.+
T Consensus 179 K~lp~l 184 (251)
T PF07091_consen 179 KTLPCL 184 (251)
T ss_dssp T-HHHH
T ss_pred HHHHHH
Confidence 888888
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00051 Score=60.12 Aligned_cols=81 Identities=19% Similarity=0.105 Sum_probs=61.6
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~ 183 (352)
..+++..+|+--|.|..+..+++.+. +..+++|+|-++.+++.|++.......++.+++..+.+....++ ...+++|.
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~-~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vDG 99 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLP-DLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVDG 99 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCC-CCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCceeE
Confidence 34478999999999999999999884 45579999999999999999987766788888887664322111 12346666
Q ss_pred EEe
Q psy11741 184 VLL 186 (352)
Q Consensus 184 V~~ 186 (352)
|+.
T Consensus 100 iL~ 102 (314)
T COG0275 100 ILL 102 (314)
T ss_pred EEE
Confidence 664
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0004 Score=63.27 Aligned_cols=113 Identities=18% Similarity=0.282 Sum_probs=61.5
Q ss_pred CCeEEEEcCCccccHHHHHhhc--------------CCCCeEEEEEeCCHHHHH-HHHhcccc-----CCCc--eEEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHC--------------KNDNVFVYGCDFSENAVN-ILKEHEEY-----KPDR--CHAFVC 165 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~--------------~~~~~~v~gvD~s~~~l~-~a~~~~~~-----~~~~--v~~~~~ 165 (352)
.-+|+|+||.+|..++.+.... ..+..+|+--|+-..-.. ..+..... ...+ +..+-+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 5689999999999888765532 113367888887442111 11111100 0112 223334
Q ss_pred cCCCCCCCCCCCCCcceEEEehhhhhccCh--h-----------------------------------HHHHHHHHHHHh
Q psy11741 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINP--N-----------------------------------KMQHVINQVYKY 208 (352)
Q Consensus 166 d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~--~-----------------------------------~~~~~l~~~~~~ 208 (352)
.+.+ --+|+++.|++++.+++||++. + |+..+|+.=++-
T Consensus 97 SFy~----rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 97 SFYG----RLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp -TTS------S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhh----ccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 4442 2367899999999999999841 1 344556556677
Q ss_pred cCCCEEEEEEeCCCCc
Q psy11741 209 LKPGGMVLFRDYGRYD 224 (352)
Q Consensus 209 LkpgG~l~~~~~~~~~ 224 (352)
|+|||++++...++.+
T Consensus 173 Lv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEEE-ST
T ss_pred eccCcEEEEEEeeccc
Confidence 8999999998776554
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0007 Score=59.52 Aligned_cols=156 Identities=15% Similarity=0.209 Sum_probs=97.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc----CCCceEEEEecCCCCCCCC-----CCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY----KPDRCHAFVCDVTSEDWNP-----PFAP 178 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~~~-----~~~~ 178 (352)
...|+.+|||-=.-...+.. . ++..++=+|.-. .++.-++.+.. ...+..++..|+. ..|.. .+..
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~--~-~~~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~ 156 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPW--P-DGTRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDP 156 (260)
T ss_pred CcEEEEeCCccccHHHhcCC--C-CCCeEEECCChH-HHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCC
Confidence 34699999998665554432 1 346677777643 45544444432 2467888899987 33211 2333
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh--hhcCccccCceeecCCCeeeeccCHHH
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR--FKKGRCLQDNFYARGDGTLVYFFTREE 256 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (352)
..--++++-.++.+++++....+++.+.+...||+.+++...++....... .... ...............++.++
T Consensus 157 ~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 233 (260)
T TIGR00027 157 TAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPV---YHAARGVDGSGLVFGIDRAD 233 (260)
T ss_pred CCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHH---HHhhhcccccccccCCChhh
Confidence 445678888899999999999999999999889999999765542111000 0000 00000011122334578899
Q ss_pred HHHHHHhCCCceEEe
Q psy11741 257 VKTMFESAGFVEKQN 271 (352)
Q Consensus 257 ~~~ll~~~Gf~~~~~ 271 (352)
+..+|...||.....
T Consensus 234 ~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999998754
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00018 Score=64.11 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~V~ 185 (352)
++..++|.-||.|..+..+++.+ +..+|+|+|.++.+++.|+++......++.+++++..+....+. ....++|.|+
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l--~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl 97 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQL--GTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGIL 97 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence 47899999999999999999987 34789999999999999998876555678899888775321121 1235789888
Q ss_pred ehhh
Q psy11741 186 LIFV 189 (352)
Q Consensus 186 ~~~~ 189 (352)
+...
T Consensus 98 ~DLG 101 (305)
T TIGR00006 98 VDLG 101 (305)
T ss_pred Eecc
Confidence 8543
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0049 Score=51.58 Aligned_cols=124 Identities=9% Similarity=0.099 Sum_probs=91.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.++.||||--|.+...|.+.. +...+++.|+++..++.|.+++... ..+++...+|... .+. .+..+|+|+
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~--~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~---~l~-~~d~~d~iv 90 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNN--PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA---VLE-LEDEIDVIV 90 (226)
T ss_pred CCceeeccCchhHhHHHHHhcC--CcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc---ccC-ccCCcCEEE
Confidence 5669999999999999999976 6778999999999999999988763 3667777887653 222 245789988
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
..++- -.-...+|++-.+-|+.=-.+++. ++ -...+++.++.+.+
T Consensus 91 IAGMG----G~lI~~ILee~~~~l~~~~rlILQ-Pn------------------------------~~~~~LR~~L~~~~ 135 (226)
T COG2384 91 IAGMG----GTLIREILEEGKEKLKGVERLILQ-PN------------------------------IHTYELREWLSANS 135 (226)
T ss_pred EeCCc----HHHHHHHHHHhhhhhcCcceEEEC-CC------------------------------CCHHHHHHHHHhCC
Confidence 76542 245567777777777643456663 11 34677899999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|.++...
T Consensus 136 ~~I~~E~ 142 (226)
T COG2384 136 YEIKAET 142 (226)
T ss_pred ceeeeee
Confidence 9988754
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00098 Score=59.06 Aligned_cols=83 Identities=12% Similarity=0.019 Sum_probs=47.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC---CCceEEEEecCCCCCC-CCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK---PDRCHAFVCDVTSEDW-NPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~-~~~~~~~~fD~ 183 (352)
..++||||||...+--.|.... .+++++|.|+++..++.|+++.... ..+|+++...-....+ .+....+.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~--~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL--YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhh--cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 5689999999987654454444 6899999999999999999998765 3668777553222111 12223468999
Q ss_pred EEehhhhhc
Q psy11741 184 VLLIFVLDA 192 (352)
Q Consensus 184 V~~~~~l~~ 192 (352)
.+|+=-++.
T Consensus 181 tmCNPPFy~ 189 (299)
T PF05971_consen 181 TMCNPPFYS 189 (299)
T ss_dssp EEE-----S
T ss_pred EecCCcccc
Confidence 999766554
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.025 Score=48.31 Aligned_cols=136 Identities=15% Similarity=0.074 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCC-CCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF-APESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~V~ 185 (352)
.+++||-+|=.-- .+++++... ...+|+.+|+++.+++..++.++..+.+++.+..|+.+ .+|. -.++||+++
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~--~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~---~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTG--LPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD---PLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS------TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcH-HHHHHHhhC--CCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc---cCCHHHhcCCCEEE
Confidence 3889999985542 334444322 66799999999999999999888777779999999987 3432 258999998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCE-EEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGG-MVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
..=. + +.+-..-++.+..+.||..| ..++.--...... .-..++.+.+.+.
T Consensus 118 TDPP-y--T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~-------------------------~~~~~~Q~~l~~~ 169 (243)
T PF01861_consen 118 TDPP-Y--TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASP-------------------------DKWLEVQRFLLEM 169 (243)
T ss_dssp E----S--SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--H-------------------------HHHHHHHHHHHTS
T ss_pred eCCC-C--CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcH-------------------------HHHHHHHHHHHHC
Confidence 7321 1 23566788899999998655 5455322111000 0112567778899
Q ss_pred CCceEEeeeeee
Q psy11741 265 GFVEKQNLIDRR 276 (352)
Q Consensus 265 Gf~~~~~~~~~~ 276 (352)
||.+.+...+..
T Consensus 170 gl~i~dii~~Fn 181 (243)
T PF01861_consen 170 GLVITDIIPDFN 181 (243)
T ss_dssp --EEEEEEEEEE
T ss_pred CcCHHHHHhhhc
Confidence 999988765443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0019 Score=54.45 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=72.1
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH----HHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCc
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN----AVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPES 180 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 180 (352)
..++.+||-+|+++|.....+..... |..-|++++.|.. .+..|+++ .||-.+..|++.+.. .-..-+-
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVG-peG~VYAVEfs~rsGRdL~nmAkkR-----tNiiPIiEDArhP~K-YRmlVgm 226 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVG-PEGCVYAVEFSHRSGRDLINMAKKR-----TNIIPIIEDARHPAK-YRMLVGM 226 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccC-CCceEEEEEecccchHHHHHHhhcc-----CCceeeeccCCCchh-eeeeeee
Confidence 44589999999999999888888776 6668999999984 34444443 678888889875321 1111235
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.|+|++.-. .++....+.-+....||+||-++++.
T Consensus 227 VDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 227 VDVIFADVA----QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 677765321 23444445566778899999999864
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0015 Score=56.09 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=54.9
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC------C----CceEEEEecCCCCCCCCCCCCC
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK------P----DRCHAFVCDVTSEDWNPPFAPE 179 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~----~~v~~~~~d~~~~~~~~~~~~~ 179 (352)
+|||+-+|+|..+..++. .|++|+++|-++.+....+.+.... . .+++++.+|..... .-...
T Consensus 91 ~VLD~TAGlG~Da~~las----~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L---~~~~~ 163 (250)
T PRK10742 91 DVVDATAGLGRDAFVLAS----VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL---TDITP 163 (250)
T ss_pred EEEECCCCccHHHHHHHH----cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH---hhCCC
Confidence 899999999999999998 6778999999999888877665541 1 46788888876532 21234
Q ss_pred cceEEEe
Q psy11741 180 SLDIVLL 186 (352)
Q Consensus 180 ~fD~V~~ 186 (352)
+||+|++
T Consensus 164 ~fDVVYl 170 (250)
T PRK10742 164 RPQVVYL 170 (250)
T ss_pred CCcEEEE
Confidence 7999998
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00091 Score=55.82 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=58.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcC--CCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCC----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK--NDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~----~~~~f 181 (352)
+..|+|+|.-.|.-+..+|..+. ....+|+|+|+.................+|+++++|..+...-.+. .....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 67899999999988877765441 1556999999965433222211111237899999998764311111 11233
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.+|+. .+-|.. ++..+.|+....+++||+++++.+.
T Consensus 113 vlVil-Ds~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 113 VLVIL-DSSHTH--EHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp EEEEE-SS------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred eEEEE-CCCccH--HHHHHHHHHhCccCCCCCEEEEEec
Confidence 34443 232322 6778889999999999999999653
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0011 Score=62.11 Aligned_cols=99 Identities=16% Similarity=0.299 Sum_probs=66.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCe--EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNV--FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
-..|+|...|.|.++.+|... +-+ +|+-+ ..+..+...-.+- .--...|-.+ .++.-+.+||+|.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~---~VWVMNVVP~-~~~ntL~vIydRG------LIG~yhDWCE---~fsTYPRTYDLlH 432 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD---PVWVMNVVPV-SGPNTLPVIYDRG------LIGVYHDWCE---AFSTYPRTYDLLH 432 (506)
T ss_pred eeeeeeecccccHHHHHhccC---CceEEEeccc-CCCCcchhhhhcc------cchhccchhh---ccCCCCcchhhee
Confidence 457999999999999998773 322 23322 2222222222221 1223345443 3333468999999
Q ss_pred ehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+..++... +..++..++-++-|+|+|||.+++.+
T Consensus 433 A~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 433 ADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 99888765 56788899999999999999999974
|
; GO: 0008168 methyltransferase activity |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.039 Score=53.17 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=89.6
Q ss_pred HHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCC--CeE
Q psy11741 58 IQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKND--NVF 135 (352)
Q Consensus 58 ~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~--~~~ 135 (352)
-..|....++| .+--+.....|+..+....-....+.+ .+..+|.|..||+|.+.....+.+... ...
T Consensus 147 G~~yE~ll~~f-a~~~~k~~GEfyTP~~v~~liv~~l~~---------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~ 216 (489)
T COG0286 147 GDAYEYLLRKF-AEAEGKEAGEFYTPREVSELIVELLDP---------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIF 216 (489)
T ss_pred hHHHHHHHHHH-HHhcCCCCCccCChHHHHHHHHHHcCC---------CCCCeecCCCCchhHHHHHHHHHHHhhcccee
Confidence 45555555544 332233223555555433322222222 225699999999999988887776422 367
Q ss_pred EEEEeCCHHHHHHHHhccccCCCc--eEEEEecCCCCCCCC-CCCCCcceEEEehhhhh---cc----------------
Q psy11741 136 VYGCDFSENAVNILKEHEEYKPDR--CHAFVCDVTSEDWNP-PFAPESLDIVLLIFVLD---AI---------------- 193 (352)
Q Consensus 136 v~gvD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~-~~~~~~fD~V~~~~~l~---~~---------------- 193 (352)
++|.|+++.....|+-+.--.+.+ +....+|-....... ....+.||.|+++--+. +.
T Consensus 217 ~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~ 296 (489)
T COG0286 217 IYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYG 296 (489)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccC
Confidence 999999999999999886544332 344445443321111 12346799988832110 00
Q ss_pred ----ChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 194 ----NPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 194 ----~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
....-...++.+...|+|||+..+..
T Consensus 297 ~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 297 VFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred CCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 11123678899999999988666543
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0074 Score=47.18 Aligned_cols=84 Identities=21% Similarity=0.326 Sum_probs=56.4
Q ss_pred EEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccC---------hhHHHHHHH
Q psy11741 135 FVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAIN---------PNKMQHVIN 203 (352)
Q Consensus 135 ~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~---------~~~~~~~l~ 203 (352)
+|+|+|+-+.+++.++++....+ .+++++..+=...... .+.+++|+++.+. .+++ ++.-..+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~--i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY--IPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT----S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh--CccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHH
Confidence 58999999999999999987643 4688887654432211 2235899988753 3332 345668899
Q ss_pred HHHHhcCCCEEEEEEeCCC
Q psy11741 204 QVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 204 ~~~~~LkpgG~l~~~~~~~ 222 (352)
.+.++|+|||++.+..+..
T Consensus 77 ~al~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHHHEEEEEEEEEEE--S
T ss_pred HHHHhhccCCEEEEEEeCC
Confidence 9999999999999987653
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0011 Score=49.01 Aligned_cols=39 Identities=23% Similarity=0.615 Sum_probs=31.6
Q ss_pred cceEEEehhhhhcc----ChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLDAI----NPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+||+|+|..+.-++ .++-+..+++.+++.|+|||.|++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998875544 3567889999999999999999995
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2793|consensus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.015 Score=50.10 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=64.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhc------cccCCCceEEEEecCCCCCCCCCCCCCc-
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH------EEYKPDRCHAFVCDVTSEDWNPPFAPES- 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~------~~~~~~~v~~~~~d~~~~~~~~~~~~~~- 180 (352)
..+||++|+|+|..+...+.. .+.+|+..|+..........+ ....+..+.....+-.... ...+....
T Consensus 87 ~~~vlELGsGtglvG~~aa~~---~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~-~~~~~~~~~ 162 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALL---LGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNAL-DVSFRLPNP 162 (248)
T ss_pred ceeEEEecCCccHHHHHHHHH---hcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcc-cHhhccCCc
Confidence 567999999999766666654 566888888765433332211 1111223433333322211 11111233
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|+|+++.++.+- .....++..++.+|..+|.+++...
T Consensus 163 ~DlilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 163 FDLILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred ccEEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 9999999988765 6677778888888888886666543
|
|
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.026 Score=51.00 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEEcCCccccHHHHHhhcCCC--CeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCC-----
Q psy11741 103 TDTCSTKNILEIGCGVGNSVFPIVEHCKND--NVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNP----- 174 (352)
Q Consensus 103 ~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~----- 174 (352)
+...++.+|||+++..|.-+..+.+..-.. ...|++=|.++.=+.......... .+++.....|+....-..
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence 356679999999999999998888876322 237999999987666665554332 244445555554321110
Q ss_pred CCCCCcceEEEehh------hhhc--------------cC-hhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 175 PFAPESLDIVLLIF------VLDA--------------IN-PNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 175 ~~~~~~fD~V~~~~------~l~~--------------~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
+.....||-|++-- ++.+ .+ +.-+..+|.+..++||+||.++-++.+..
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 12234689988710 0100 00 12345789999999999999999887643
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0098 Score=52.68 Aligned_cols=114 Identities=19% Similarity=0.284 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcC------------------CCCeEEEEEeCCH--HHHHHHHhccc------------
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCK------------------NDNVFVYGCDFSE--NAVNILKEHEE------------ 154 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~------------------~~~~~v~gvD~s~--~~l~~a~~~~~------------ 154 (352)
+..+||.||.|.|.-...++..+. .+..+++.||+.+ ..+......+.
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 457999999999988888777661 1225899999965 23333222211
Q ss_pred ------cCCCceEEEEecCCCCCCCC--C-CCCCcceEEEehhhhhcc---ChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 155 ------YKPDRCHAFVCDVTSEDWNP--P-FAPESLDIVLLIFVLDAI---NPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 155 ------~~~~~v~~~~~d~~~~~~~~--~-~~~~~fD~V~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
...-++.|.+.|+.....+. . +...+.++|...+++.-+ +...-.++|.++-..++||..|+|.+.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 12256889999998643210 0 112357888888776654 446677899999999999999998763
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.049 Score=49.25 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=37.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC------CCeEEEEEeCCHHHHHHHHhccc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN------DNVFVYGCDFSENAVNILKEHEE 154 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~------~~~~v~gvD~s~~~l~~a~~~~~ 154 (352)
+..++|+|.|+|.++..+++.... ...++.-|++|+...+.=+++++
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 568999999999999988876521 25689999999998877666654
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.054 Score=48.54 Aligned_cols=159 Identities=11% Similarity=0.169 Sum_probs=98.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----CceEEEEecCCCCCCCCCC-----CC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFVCDVTSEDWNPPF-----AP 178 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~-----~~ 178 (352)
...|+-+|||--.-+..+-. . .+..|+-+|. |+.++.=++.+...+ ...+++..|+.+..|...+ ..
T Consensus 93 ~~qvViLgaGLDTRayRl~~--~-~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~ 168 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDW--P-KGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDR 168 (297)
T ss_pred ccEEEEeccccccceeecCC--C-CCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCc
Confidence 46799999987544333322 1 3577888887 445555555554432 3689999999966553333 34
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhh-cCccccCc-eeecCCCeeeeccCHHH
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFK-KGRCLQDN-FYARGDGTLVYFFTREE 256 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~ 256 (352)
..--++++-+++.+++++...+++..|..++.||..++.....+.. ...... ........ .............+..+
T Consensus 169 ~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e 247 (297)
T COG3315 169 SRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGS-LRDRLRRPAARKTMRGEDLDRGELVYFGDDPAE 247 (297)
T ss_pred CCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHH-HHhcccchhhhhhccccccccccceeccCCHHH
Confidence 5566788888999999999999999999999998888875431111 110000 00000000 00011122233456899
Q ss_pred HHHHHHhCCCceEEe
Q psy11741 257 VKTMFESAGFVEKQN 271 (352)
Q Consensus 257 ~~~ll~~~Gf~~~~~ 271 (352)
+..++.+.||.....
T Consensus 248 ~~~~l~~~g~~~~~~ 262 (297)
T COG3315 248 IETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHhcCEEEEec
Confidence 999999999988765
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.014 Score=52.12 Aligned_cols=78 Identities=19% Similarity=0.125 Sum_probs=54.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-CCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-APESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-~~~~fD~V 184 (352)
++..++|+--|.|..+..+++.+ ++.+++|+|-++.+++.|+++......++.++..++.+....+. . ...++|.|
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~--~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~~~~dgi 97 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKL--PNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGINKVDGI 97 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT---TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTTS-EEEE
T ss_pred CCceEEeecCCcHHHHHHHHHhC--CCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCCCccCEE
Confidence 37899999999999999999988 56899999999999999999887666778888887764321111 1 23466777
Q ss_pred Ee
Q psy11741 185 LL 186 (352)
Q Consensus 185 ~~ 186 (352)
+.
T Consensus 98 L~ 99 (310)
T PF01795_consen 98 LF 99 (310)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.025 Score=56.94 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=65.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcC-----CC-----CeEEEEEeCCH---HHHHHHHhc-----------cc---------
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK-----ND-----NVFVYGCDFSE---NAVNILKEH-----------EE--------- 154 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~-----~~-----~~~v~gvD~s~---~~l~~a~~~-----------~~--------- 154 (352)
.-+|+|+|-|+|.......+... .+ ..+++++|..| +.+..+.+. ..
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 46899999999997766665441 12 46889999643 333332211 10
Q ss_pred ------cCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHH-HHHHHHHHHhcCCCEEEEEE
Q psy11741 155 ------YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKM-QHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 155 ------~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~-~~~l~~~~~~LkpgG~l~~~ 218 (352)
.....+++..+|+.+. ++.....+|+++.-..--.-+++.+ ..+++.++++++|||.+.-.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~---~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANEL---LPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHH---HHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 0112445667787642 2222356999998543222233333 46899999999999998854
|
|
| >KOG2920|consensus | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0032 Score=54.78 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHh-cc----------ccCCCceEEEEecCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKE-HE----------EYKPDRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~-~~----------~~~~~~v~~~~~d~~~~~~~~~ 175 (352)
.+++|||+|||+|...+..... ....+...|++...++.-.- +. .+...-......++.+ +...
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~---~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~d--g~~~ 190 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVK---GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSD--GVFN 190 (282)
T ss_pred cCceeEecCCcccccchhhhhh---ccceeeeEecchhheeeecccceecchhhhhhhhhcccceecccccccc--chhh
Confidence 3889999999999988877663 22677788887766621110 00 0000001111110000 0111
Q ss_pred CCC-CcceEEEehhhhhccChhHHHHH-HHHHHHhcCCCEEEEEE
Q psy11741 176 FAP-ESLDIVLLIFVLDAINPNKMQHV-INQVYKYLKPGGMVLFR 218 (352)
Q Consensus 176 ~~~-~~fD~V~~~~~l~~~~~~~~~~~-l~~~~~~LkpgG~l~~~ 218 (352)
... -.||+|.++.++... .....+ +.....+++++|++++.
T Consensus 191 ~t~~~~ydlIlsSetiy~~--~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 191 HTERTHYDLILSSETIYSI--DSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred hccccchhhhhhhhhhhCc--chhhhhHhhhhhhcCCccchhhhh
Confidence 111 279999998888766 444554 55566777889987764
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.032 Score=50.48 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=65.6
Q ss_pred CCCCCeEEEEcCC-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|+=+|+| .|..+..+|+. .+++|+++|.|+.-++.|++.-.. .++... +.. ....-.+.||+
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka---~ga~Via~~~~~~K~e~a~~lGAd-----~~i~~~--~~~-~~~~~~~~~d~ 232 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKA---MGAEVIAITRSEEKLELAKKLGAD-----HVINSS--DSD-ALEAVKEIADA 232 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHH---cCCeEEEEeCChHHHHHHHHhCCc-----EEEEcC--Cch-hhHHhHhhCcE
Confidence 4568899888886 45678888887 558999999999999999887432 222221 100 11111234999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|+..-. ...+....+.|++||.+++.-..
T Consensus 233 ii~tv~---------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG---------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC---------hhhHHHHHHHHhcCCEEEEECCC
Confidence 987543 34566778889999999986544
|
|
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.011 Score=50.22 Aligned_cols=46 Identities=59% Similarity=0.860 Sum_probs=44.2
Q ss_pred cCHHHHHHHHHhCCCceEEeeeeeeeeeecCCccceeeeeEeeEEe
Q psy11741 252 FTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSY 297 (352)
Q Consensus 252 ~~~~~~~~ll~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (352)
++.+++..++.++||..++..++.++.+++.....++|.|+++.|+
T Consensus 216 F~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~ 261 (264)
T KOG2361|consen 216 FTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQ 261 (264)
T ss_pred ccHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEee
Confidence 7899999999999999999999999999999999999999999886
|
|
| >KOG2539|consensus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.012 Score=54.64 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=71.3
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCC-CcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAP-ESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~fD~ 183 (352)
...+..++|+|.|.|.-...+........-.++.||.|..|+.......+.....-......+......+|.+. +.||+
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceee
Confidence 34466789999988865544443332123468999999999999988766511111111111111111334433 45999
Q ss_pred EEehhhhhcc-ChhHHHHHHHHHH-HhcCCCEEEEEEeCC
Q psy11741 184 VLLIFVLDAI-NPNKMQHVINQVY-KYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~~~l~~~-~~~~~~~~l~~~~-~~LkpgG~l~~~~~~ 221 (352)
|++.+.++++ +......+.+.+. +..++||.+++.+.+
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 9999999988 3344444555444 556899998887654
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.011 Score=49.16 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE 153 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~ 153 (352)
.+.++.|.+||+|.++.-+.-..+..-..|+|.|+++.+++.|++|.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 47789999999999876665544323458999999999999999986
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.034 Score=42.19 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=61.2
Q ss_pred CCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccCh
Q psy11741 116 CGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINP 195 (352)
Q Consensus 116 cG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~ 195 (352)
||.|.++..+++.+...+..++.+|.++..++.++... +.++.+|..+...-....-.+.|.|++.. +.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~ 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG------VEVIYGDATDPEVLERAGIEKADAVVILT-----DD 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT------SEEEES-TTSHHHHHHTTGGCESEEEEES-----SS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc------cccccccchhhhHHhhcCccccCEEEEcc-----CC
Confidence 67778999998888655568999999999988887653 67889998864211111234677777642 22
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 196 NKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 196 ~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+.....+....+-+.|...++...
T Consensus 73 d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 73 DEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEE
Confidence 334445555667778887777753
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.052 Score=41.26 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=39.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY 155 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 155 (352)
+++|+|||.+-|..++.++.+ ....|+++++++...+..+++.+.
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~---GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLR---GASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred CCEEEEecCCccchhhHHhhc---CccEEEEeccCHHHHHHHHHHhhh
Confidence 889999999999999998885 344899999999999999887653
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.021 Score=48.81 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=45.4
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhc---cccC-------CCceEEEEecCCCCCCCCCCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH---EEYK-------PDRCHAFVCDVTSEDWNPPFAP 178 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~---~~~~-------~~~v~~~~~d~~~~~~~~~~~~ 178 (352)
.+|||+-+|-|..+.-++. -|.+|++++-||.+....+.- +... ..+++++.+|..+. +..++
T Consensus 77 ~~VLDaTaGLG~Da~vlA~----~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~---L~~~~ 149 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS----LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY---LRQPD 149 (234)
T ss_dssp --EEETT-TTSHHHHHHHH----HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH---CCCHS
T ss_pred CEEEECCCcchHHHHHHHc----cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH---HhhcC
Confidence 4899999999999998886 467999999999765544422 2111 14789999998863 33457
Q ss_pred CcceEEEehhhhh
Q psy11741 179 ESLDIVLLIFVLD 191 (352)
Q Consensus 179 ~~fD~V~~~~~l~ 191 (352)
.+||+|++-=++.
T Consensus 150 ~s~DVVY~DPMFp 162 (234)
T PF04445_consen 150 NSFDVVYFDPMFP 162 (234)
T ss_dssp S--SEEEE--S--
T ss_pred CCCCEEEECCCCC
Confidence 8999999854443
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.32 Score=43.21 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=49.6
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
+|+|+.||.|.++..+.. .|. .+.++|+++.+++..+.+... ....+|+.+.... .. ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~----~G~~~v~a~e~~~~a~~~~~~N~~~-----~~~~~Di~~~~~~-~~-~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEK----AGFEIVAANEIDKSAAETYEANFPN-----KLIEGDITKIDEK-DF-IPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHH----cCCEEEEEEeCCHHHHHHHHHhCCC-----CCccCccccCchh-hc-CCCCCEEEeCC
Confidence 689999999999888876 334 468899999999999888642 2566777753211 11 35699999844
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1099|consensus | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.015 Score=48.82 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=70.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC----CCe---EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC----CCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN----DNV---FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN----PPF 176 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~----~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~----~~~ 176 (352)
-.+++|++...|.++..|.+++-. .+. .+++||+-+- . .-+.|.-+++|++..... -.|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-a---------PI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-A---------PIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-C---------ccCceEEeecccCCHhHHHHHHHHh
Confidence 458999999999999999887732 112 3999998542 1 124578889999865321 124
Q ss_pred CCCcceEEEehh-----hhhccC----hhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 177 APESLDIVLLIF-----VLDAIN----PNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 177 ~~~~fD~V~~~~-----~l~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
...+.|+|+|-. .+|.++ .+-+..+|.-...+|||||.|+--.+.
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 456899999944 355552 123445666677899999999875443
|
|
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.044 Score=47.96 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
.+++||-||-|-|...+..+++- .--++.-+|+....++..++-... .++++....+|-..... ....++|
T Consensus 121 npkkvlVVgggDggvlrevikH~--~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~--~~~~~~~ 196 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHK--SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLE--DLKENPF 196 (337)
T ss_pred CCCeEEEEecCCccceeeeeccc--cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHH--HhccCCc
Confidence 47899999999999988887752 344788999999988888776542 45788888888654321 2236899
Q ss_pred eEEEehhhhhccC--hhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 182 DIVLLIFVLDAIN--PNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+|+.-..=--.+ .--.......+.+.||+||+++...
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9999743211111 1234567788899999999998864
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.036 Score=45.28 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=77.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC--CCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC---CCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN--DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP---FAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~~~fD 182 (352)
+..|+|.|.--|.-++..|...-. ...+|+++|++-..+.-+... .+.|.|++++-.++....+ ...+.--
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----~p~i~f~egss~dpai~eqi~~~~~~y~k 145 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----VPDILFIEGSSTDPAIAEQIRRLKNEYPK 145 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----CCCeEEEeCCCCCHHHHHHHHHHhcCCCc
Confidence 678999999999888777764421 347999999987665444332 3679999998776432111 1122224
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCc
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 224 (352)
+.+|..+-|+. +...+.|+-+..+|..|-++++.+.+..+
T Consensus 146 IfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 146 IFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred EEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 55555666776 78888899999999999999998765543
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.25 Score=40.21 Aligned_cols=131 Identities=14% Similarity=0.129 Sum_probs=74.4
Q ss_pred EcCCccccHHHHHhhcCCCCeEEEE--EeCCHHHHHHHH---hccccC-CCceE-EEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 114 IGCGVGNSVFPIVEHCKNDNVFVYG--CDFSENAVNILK---EHEEYK-PDRCH-AFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 114 ~GcG~G~~~~~l~~~~~~~~~~v~g--vD~s~~~l~~a~---~~~~~~-~~~v~-~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
||=|.=.++..|++... .+.++++ .|..+...+... .+.... ..++. ..-.|+++.........+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~-~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFG-SATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcC-CCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 45555556677777764 2445554 455444443332 222211 12222 3445777654444445788999998
Q ss_pred hhhhhc-----------cChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHH
Q psy11741 187 IFVLDA-----------INPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTRE 255 (352)
Q Consensus 187 ~~~l~~-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (352)
++--.- .+..-+..+++.+..+|+++|.+.+....... ++.=
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------------------------y~~W 134 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------------------------YDSW 134 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------------------------Cccc
Confidence 653111 01234557788899999999999997433211 1111
Q ss_pred HHHHHHHhCCCceEEee
Q psy11741 256 EVKTMFESAGFVEKQNL 272 (352)
Q Consensus 256 ~~~~ll~~~Gf~~~~~~ 272 (352)
.+..+.+++||..++..
T Consensus 135 ~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKV 151 (166)
T ss_pred cHHHHHHhcCCEEEEEe
Confidence 35577788999987764
|
|
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.15 Score=39.87 Aligned_cols=102 Identities=11% Similarity=0.071 Sum_probs=62.7
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
.++..+.+|+|+|.|++....++.. -..-+|+++++-.+..++-+.-. ......|..-|+-+. .+ +.|.
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g---~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~----dl--~dy~ 140 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCG---LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV----DL--RDYR 140 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhC---CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc----cc--cccc
Confidence 3446789999999999988887742 24679999999988888766433 335677777777542 22 2343
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.|+...+-..+ .+ +-.++..-|..+..++-.-+
T Consensus 141 ~vviFgaes~m--~d---Le~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058|consen 141 NVVIFGAESVM--PD---LEDKLRTELPANTRVVACRF 173 (199)
T ss_pred eEEEeehHHHH--hh---hHHHHHhhCcCCCeEEEEec
Confidence 33333222222 22 22334445566666665543
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.17 Score=43.86 Aligned_cols=108 Identities=22% Similarity=0.292 Sum_probs=63.1
Q ss_pred CCeEEEEcCCccccHHHHHhh---cCCCCeEEEEEeCCH--------------------------HHHHHHHhccccCC-
Q psy11741 108 TKNILEIGCGVGNSVFPIVEH---CKNDNVFVYGCDFSE--------------------------NAVNILKEHEEYKP- 157 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~---~~~~~~~v~gvD~s~--------------------------~~l~~a~~~~~~~~- 157 (352)
++.|+|+||-.|..+..++.. +..++-++++.|.=+ ..++..++++...+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 678999999999866554332 222455777776411 24555666665432
Q ss_pred --CceEEEEecCCCCCCCCC-CCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 158 --DRCHAFVCDVTSEDWNPP-FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 158 --~~v~~~~~d~~~~~~~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
.++.++.+.+.+ .+| .+..++-++.+-.-+ .+....+|+.++..|.|||++++.+++.
T Consensus 155 ~~~~v~~vkG~F~d---TLp~~p~~~IAll~lD~Dl----YesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 155 LDDNVRFVKGWFPD---TLPDAPIERIALLHLDCDL----YESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp SSTTEEEEES-HHH---HCCC-TT--EEEEEE---S----HHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CcccEEEECCcchh---hhccCCCccEEEEEEeccc----hHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 589999998865 232 123344333332211 1456788999999999999999998875
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.014 Score=43.05 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=26.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE 143 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 143 (352)
....+|+|||+|.+.-.|.. .|..-.|+|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~----EGy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNS----EGYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHh----CCCCcccccccc
Confidence 56799999999998877777 677789999743
|
; GO: 0008168 methyltransferase activity |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.034 Score=49.66 Aligned_cols=46 Identities=7% Similarity=-0.023 Sum_probs=39.7
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE 154 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~ 154 (352)
..++..|||.-||+|..+....+ .+-+.+|+|++++.++.|++++.
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~----lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKA----SGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHH
Confidence 34589999999999998877666 56689999999999999999864
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.04 Score=47.18 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=33.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHh
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKE 151 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~ 151 (352)
++..|||.-||+|..+....+ -+.+.+|+|+++...+.|++
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~----l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEE----LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHH----TT-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHH----cCCeEEEEeCCHHHHHHhcC
Confidence 488999999999998877776 66689999999999999864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.047 Score=50.63 Aligned_cols=102 Identities=18% Similarity=0.144 Sum_probs=72.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--C-ceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--D-RCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~-~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||.=+|+|.=++..+.... ....|+.-|+|+.+++..++|.+.++ . .++....|+.... ......||+|
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~-~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll---~~~~~~fD~I 125 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELA-GVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL---YSRQERFDVI 125 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-S-SECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH---CHSTT-EEEE
T ss_pred CceEEeccccccHHHHHHHHHcC-CCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh---hhccccCCEE
Confidence 46899999999998888888752 33589999999999999999976543 2 4677788876421 1246789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
=.- +-..+..+|..+.+.++.||.|.++.
T Consensus 126 DlD------PfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 126 DLD------PFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EE--------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred EeC------CCCCccHhHHHHHHHhhcCCEEEEec
Confidence 542 12456788999999999999999964
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.084 Score=46.26 Aligned_cols=78 Identities=19% Similarity=0.145 Sum_probs=51.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCC------CeEEEEEeCCHHHHHHHHhccccC-------CCceEEEEecCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKND------NVFVYGCDFSENAVNILKEHEEYK-------PDRCHAFVCDVTSEDWNP 174 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~------~~~v~gvD~s~~~l~~a~~~~~~~-------~~~v~~~~~d~~~~~~~~ 174 (352)
+.+|+|+|+|+|.++..++..+... ..+++-||+|+.+.+.-++++... ..++.+ ..++.+ .
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~----~ 93 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEE----V 93 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGC----S
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhc----c
Confidence 4689999999999999998877422 358999999999988888876542 234444 223221 1
Q ss_pred CCCCCcceEEEehhhhhccC
Q psy11741 175 PFAPESLDIVLLIFVLDAIN 194 (352)
Q Consensus 175 ~~~~~~fD~V~~~~~l~~~~ 194 (352)
| ..-+|+++.++..++
T Consensus 94 p----~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 94 P----FPGFIIANELFDALP 109 (252)
T ss_dssp -----CCEEEEEESSGGGS-
T ss_pred c----CCEEEEEeeehhcCc
Confidence 1 346777777777663
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.11 Score=49.22 Aligned_cols=109 Identities=22% Similarity=0.328 Sum_probs=76.8
Q ss_pred CCeEEEEcCCccccHHHHHhhc--CCCCeEEEEEeCCHHHHHHHHh-ccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHC--KNDNVFVYGCDFSENAVNILKE-HEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~--~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
...|+-+|.|-|-+.....++. .....++++++.+|.++-..+. +......+|+.+..|++. .+.+..+.|++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~----w~ap~eq~DI~ 443 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRK----WNAPREQADII 443 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccc----cCCchhhccch
Confidence 4568899999998776654433 1256789999999998877654 344456789999999995 33235789998
Q ss_pred Eehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++- .|..+ +.+--...|..+-+.|||+|+.+-..+.
T Consensus 444 VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYt 480 (649)
T KOG0822|consen 444 VSE-LLGSFGDNELSPECLDGAQKFLKPDGISIPSSYT 480 (649)
T ss_pred HHH-hhccccCccCCHHHHHHHHhhcCCCceEccchhh
Confidence 872 23333 2233346788889999999988866543
|
|
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.063 Score=48.02 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHH-------hccccCC---CceEEEEecCCCCCCCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILK-------EHEEYKP---DRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~-------~~~~~~~---~~v~~~~~d~~~~~~~~~ 175 (352)
.++.-|.|-=.|||.+....+. -|+.|+|.||+-.|+...+ .|++..+ .-+.++.+|.....+.
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~----FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r-- 280 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAH----FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR-- 280 (421)
T ss_pred CCCCEEecCccccCceeeehhh----hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh--
Confidence 4588999999999999888887 6789999999998887432 2333222 3456788888865442
Q ss_pred CCCCcceEEEeh------------------------hhhhccCh-------hHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 176 FAPESLDIVLLI------------------------FVLDAINP-------NKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 176 ~~~~~fD~V~~~------------------------~~l~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
....||.|+|. ..-.|.+. .-...+|.-.++.|.-||++++-.+
T Consensus 281 -sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 281 -SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred -hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 25689999990 01112211 1223455667788999999998644
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.1 Score=47.30 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=73.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+|||.=||+|.=++.++... +..+++.-|+||.+++.+++|...+ +.+......|+... +......||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~--~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~l---m~~~~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET--GVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANAL---LHELHRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhc--CccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHH---HHhcCCCccEEec
Confidence 5689999999999888888865 4448999999999999999998765 45555555665432 1112367887733
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
. +-..+..++..+.+.++.||++.++-
T Consensus 128 ----D--PFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 ----D--PFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred ----C--CCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 1 12455677888888888999999853
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.072 Score=45.85 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=39.9
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY 155 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 155 (352)
..++..|||.-||+|..+....+ .+.+.+|+|+++...+.|.+++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~----~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQ----SGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHH
Confidence 34588999999999998877766 566899999999999999888754
|
|
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.071 Score=49.19 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=58.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCC-CCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFA-PESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~-~~~fD~V 184 (352)
...|||+|.|||.++...+.+. +-.|++++.-..|.+.|++-....+ .+|+++.---+ +.... .-..|++
T Consensus 67 kv~vLdigtGTGLLSmMAvrag---aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSt----ev~vg~~~RadI~ 139 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAG---ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRST----EVKVGGSSRADIA 139 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhc---CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccc----eeeecCcchhhhh
Confidence 3468999999999988777754 3369999999999999998766543 55655543222 11111 1235655
Q ss_pred EehhhhhccChhHHHHHHHHHHHhc-CCCE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYL-KPGG 213 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG 213 (352)
+.-.+...+--+-....++.+++.| +||.
T Consensus 140 v~e~fdtEligeGalps~qhAh~~L~~~nc 169 (636)
T KOG1501|consen 140 VREDFDTELIGEGALPSLQHAHDMLLVDNC 169 (636)
T ss_pred hHhhhhhhhhccccchhHHHHHHHhcccCC
Confidence 5433322221222344555555544 4443
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.026 Score=44.79 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=59.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCce-EEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC-HAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+++++-+|+..-..-. +|-.. ...+++.++.++--++.- + ..++ .+...|+... ...-.++||.+.|
T Consensus 2 ~~~g~V~GS~~PwvEv-~aL~~--GA~~iltveyn~L~i~~~---~---~dr~ssi~p~df~~~---~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEV-MALQH--GAAKILTVEYNKLEIQEE---F---RDRLSSILPVDFAKN---WQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhH-HHHHc--CCceEEEEeecccccCcc---c---ccccccccHHHHHHH---HHHhhccchhhhe
Confidence 5677888887543332 33222 455788888765211110 0 0111 1222333221 1112578999999
Q ss_pred hhhhhccC---------hhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAIN---------PNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
..+++|.. +.--...+.++.++|||||.|++..+.
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred echhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence 99998872 223346778889999999999998654
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.1 Score=44.03 Aligned_cols=84 Identities=14% Similarity=0.027 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCC-CCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDW-NPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~-~~~~~~~~fD 182 (352)
+..++||||.|.-.+=-.+-. ..-+++.+|.|+++..++.|+.....++ ..++.....=..-.+ ..--..+.||
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~--~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGV--HEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred CceEEEeeccCcccccccccc--eeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 467889999887654322222 2268899999999999999988765432 234444321111000 1111257899
Q ss_pred EEEehhhhhc
Q psy11741 183 IVLLIFVLDA 192 (352)
Q Consensus 183 ~V~~~~~l~~ 192 (352)
+++|+--+|.
T Consensus 156 ~tlCNPPFh~ 165 (292)
T COG3129 156 ATLCNPPFHD 165 (292)
T ss_pred eEecCCCcch
Confidence 9999776653
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.46 Score=45.86 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcCCccc-cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC-------CCC-
Q psy11741 105 TCSTKNILEIGCGVGN-SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW-------NPP- 175 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~-~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-------~~~- 175 (352)
..++.+|+=+|||.=. .+...++. .|+.|+++|.++.-++.+++.- .++...|..+... .+.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~---lGA~V~a~D~~~~rle~aeslG------A~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGS---LGAIVRAFDTRPEVAEQVESMG------AEFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHcC------CeEEEeccccccccccchhhhcch
Confidence 3458999999999744 55555655 5668999999999999888742 2222222211000 000
Q ss_pred ---------CC--CCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 176 ---------FA--PESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 176 ---------~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+. -+.+|+|+.......- ..+..+.+++.+.+||||+++..-.
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~--~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGK--PAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcc--cCcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 1468999876543221 2233445899999999999887543
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.15 Score=47.79 Aligned_cols=107 Identities=12% Similarity=0.126 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEec-CCCCCCCCCCCCCcceE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCD-VTSEDWNPPFAPESLDI 183 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~~fD~ 183 (352)
++.+||.+|||+ |..+..+++.. +. +++++|.++..++.+++.... ..+.....+ ........ .....+|+
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~---g~~~vi~~~~~~~~~~~~~~~~~~--~vi~~~~~~~~~~~l~~~-~~~~~~D~ 257 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLL---GAERVIAIDRVPERLEMARSHLGA--ETINFEEVDDVVEALREL-TGGRGPDV 257 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHcCCc--EEEcCCcchHHHHHHHHH-cCCCCCCE
Confidence 477899999988 88888888874 43 699999999999998875211 101111111 10000001 11336898
Q ss_pred EEehhhhh-------c----c--ChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLD-------A----I--NPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~-------~----~--~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+-...-. + . +..+....+..+.+.|+|+|.+++..
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 87742111 0 0 11233567888999999999988753
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.036 Score=51.93 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
.++.+|||.=|++|.-++..+.... ...+|++-|.++..++..+++.+..+ ..++....|+.......+.....||+
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~-~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELP-GVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhc-chhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 3477999999999999999999874 23479999999999999998877542 33445556655332222333578999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|-.- +......+|..+.+.++.||.|.++.
T Consensus 187 IDLD------PyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 187 IDLD------PYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred EecC------CCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 8542 22445678888889999999999964
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.24 Score=42.65 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCCEEEEEE
Q psy11741 198 MQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 198 ~~~~l~~~~~~LkpgG~l~~~ 218 (352)
....+.+++++|||||.+++.
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 457889999999999988763
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.47 Score=43.07 Aligned_cols=129 Identities=16% Similarity=0.228 Sum_probs=75.6
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
+++|+-||.|.+...+.. .|. .+.++|+++.+.+.-+.+.. ....+|+.+.... .++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~----ag~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~-~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQ----AGFEVVWAVEIDPDACETYKANFP------EVICGDITEIDPS-DLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHH----TTEEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHH-HHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHh----cCcEEEEEeecCHHHHHhhhhccc------ccccccccccccc-cccc-cceEEEecc
Confidence 689999999999998888 454 56899999999999888864 6778888854211 2333 599999844
Q ss_pred hhhccC----------h-hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHH
Q psy11741 189 VLDAIN----------P-NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEV 257 (352)
Q Consensus 189 ~l~~~~----------~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (352)
-..-++ + ..+..-+-++.+.++|. ++++.. .+. ... . . .....+.+
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk-~~~~EN-V~~-l~~----------~-----~-----~~~~~~~i 126 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPK-YFLLEN-VPG-LLS----------S-----K-----NGEVFKEI 126 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-S-EEEEEE-EGG-GGT----------G-----G-----GHHHHHHH
T ss_pred CCceEeccccccccccccchhhHHHHHHHhhccce-EEEecc-cce-eec----------c-----c-----cccccccc
Confidence 322221 0 11222333444556886 344432 110 000 0 0 00235678
Q ss_pred HHHHHhCCCceEEeee
Q psy11741 258 KTMFESAGFVEKQNLI 273 (352)
Q Consensus 258 ~~ll~~~Gf~~~~~~~ 273 (352)
...|++.||.+....+
T Consensus 127 ~~~l~~lGY~v~~~vl 142 (335)
T PF00145_consen 127 LEELEELGYNVQWRVL 142 (335)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred cccccccceeehhccc
Confidence 8889999998775544
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.099 Score=49.12 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=75.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCC---CCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNP---PFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~---~~~~~~fD~ 183 (352)
+..+|-+|-|+|.+...+...+ +...++++++.|.|++.|++.+.... .+......|-.+..... ...+..||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~--p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL--PKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeec--CccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 5678999999999988887766 77899999999999999999875421 22333333322211001 113567999
Q ss_pred EEehh---hhhcc--ChhH--HHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 184 VLLIF---VLDAI--NPNK--MQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 184 V~~~~---~l~~~--~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
++.-- -.|-+ ++.. ...+|..+...|.|.|.+++....+.
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 88611 02323 2222 23578889999999999998765443
|
|
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.2 Score=44.64 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=65.9
Q ss_pred CCCCCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEe-----cCCCCCCCCCCC
Q psy11741 104 DTCSTKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC-----DVTSEDWNPPFA 177 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~-----d~~~~~~~~~~~ 177 (352)
+-..+.+||=+|+|+ |..+...|+.+ ...+|+.+|+++.-++.|++. ... .+..... ++.+. ..-.+.
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~--GA~~VVi~d~~~~Rle~Ak~~-Ga~--~~~~~~~~~~~~~~~~~-v~~~~g 239 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAM--GASDVVITDLVANRLELAKKF-GAT--VTDPSSHKSSPQELAEL-VEKALG 239 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHc--CCCcEEEeecCHHHHHHHHHh-CCe--EEeeccccccHHHHHHH-HHhhcc
Confidence 445688999999997 55556666765 566899999999999999983 211 0111110 00000 001122
Q ss_pred CCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 178 PESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 178 ~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
...+|+.+....+ ...++.....+++||.+++..++..
T Consensus 240 ~~~~d~~~dCsG~--------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 240 KKQPDVTFDCSGA--------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred ccCCCeEEEccCc--------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 3458888765443 3345556778999999888776543
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.27 Score=45.60 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=53.4
Q ss_pred CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 158 DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 158 ~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
.+++++.+++.+... ..+++++|.++......+++++.....++++.+.++|||++++-....
T Consensus 275 drv~i~t~si~~~L~--~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLR--RLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHH--hCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 678899988876322 235799999999999999999999999999999999999999976543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.14 Score=42.39 Aligned_cols=94 Identities=13% Similarity=0.342 Sum_probs=58.3
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----CceEEEEecCCCCCCC-----CCCCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFVCDVTSEDWN-----PPFAPE 179 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-----~~~~~~ 179 (352)
..|+.+|||--.....+.... ++..++-+|... +++.-++.....+ .+.+++.+|+.+..+. ..+..+
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~--~~~~~~evD~p~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPA--GGVRWFEVDLPE-VIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTT--TTEEEEEEE-HH-HHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred cEEEEcCCCCCchHHHhhccc--cceEEEEeCCHH-HHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 389999999987777776642 477888888844 5554444443321 2356789998864321 123345
Q ss_pred cceEEEehhhhhccChhHHHHHHHHH
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQV 205 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~ 205 (352)
.--++++-.++.+++++....+|+.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 56678888889999988888888776
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.5 Score=43.59 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=62.4
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEe-cCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC-DVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|+=+|||+ |.++..+++.. ...+|+++|.++.-++.|++..... .+..... +......... ....+|+++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~--Ga~~Viv~d~~~~Rl~~A~~~~g~~--~~~~~~~~~~~~~~~~~t-~g~g~D~vi 243 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLL--GASVVIVVDRSPERLELAKEAGGAD--VVVNPSEDDAGAEILELT-GGRGADVVI 243 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHHHHHhCCCe--EeecCccccHHHHHHHHh-CCCCCCEEE
Confidence 44899999997 44556666654 5568999999999999998843211 0000001 1000000010 123699988
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
-... ....+..+.++++|||.+.+.-..
T Consensus 244 e~~G--------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 244 EAVG--------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ECCC--------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 6443 234788899999999988876543
|
|
| >KOG1098|consensus | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.1 Score=50.23 Aligned_cols=102 Identities=14% Similarity=0.209 Sum_probs=62.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC----CCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP----FAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~----~~~~~fD~ 183 (352)
+..|||+||.+|.++.-.++.++ .+.-|+|+|+-|- ...+++...+.|++......+ ...-..|+
T Consensus 45 a~~vlDLcaAPG~W~QVA~q~~p-v~slivGvDl~pi----------kp~~~c~t~v~dIttd~cr~~l~k~l~t~~adv 113 (780)
T KOG1098|consen 45 AHVVLDLCAAPGGWLQVASQSMP-VGSLIVGVDLVPI----------KPIPNCDTLVEDITTDECRSKLRKILKTWKADV 113 (780)
T ss_pred cchheeeccCCcHHHHHHHHhCC-CCceEEEeeeeec----------ccCCccchhhhhhhHHHHHHHHHHHHHhCCCcE
Confidence 67899999999999988888776 6778999999763 122455566666654321111 01123477
Q ss_pred EEehhh----hhcc-----ChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFV----LDAI-----NPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~----l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|+.-.+ ..+. ...-....|+-....|+.||.++--.+
T Consensus 114 VLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvf 159 (780)
T KOG1098|consen 114 VLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVF 159 (780)
T ss_pred EeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccc
Confidence 775221 1111 011223556667788999999665433
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.4 Score=33.04 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=57.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
.++|+++|-|-=. ..++.+...|..++++|+.+. +. +..+.++..|++++...+ -...|+|++.
T Consensus 14 ~gkVvEVGiG~~~---~VA~~L~e~g~dv~atDI~~~-------~a---~~g~~~v~DDitnP~~~i---Y~~A~lIYSi 77 (129)
T COG1255 14 RGKVVEVGIGFFL---DVAKRLAERGFDVLATDINEK-------TA---PEGLRFVVDDITNPNISI---YEGADLIYSI 77 (129)
T ss_pred CCcEEEEccchHH---HHHHHHHHcCCcEEEEecccc-------cC---cccceEEEccCCCccHHH---hhCccceeec
Confidence 5599999987643 233333337889999999886 22 245889999999754222 2356888763
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
- ++.++...+-.+.+.++- .+++.
T Consensus 78 R-----pppEl~~~ildva~aVga--~l~I~ 101 (129)
T COG1255 78 R-----PPPELQSAILDVAKAVGA--PLYIK 101 (129)
T ss_pred C-----CCHHHHHHHHHHHHhhCC--CEEEE
Confidence 2 456777777777776554 35554
|
|
| >KOG1209|consensus | Back alignment and domain information |
|---|
Probab=91.81 E-value=1.2 Score=37.40 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=52.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH-HHHHHHhccccCCCceEEEEecCCCCCC-------CCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN-AVNILKEHEEYKPDRCHAFVCDVTSEDW-------NPPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~v~~~~~d~~~~~~-------~~~~~~~ 179 (352)
.+.||=.||.+|.++..+++.+...|+.|+++--+-+ |-+.+.+ + .+.....|+.++.. -..++++
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~-----gl~~~kLDV~~~~~V~~v~~evr~~~~G 80 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-F-----GLKPYKLDVSKPEEVVTVSGEVRANPDG 80 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-h-----CCeeEEeccCChHHHHHHHHHHhhCCCC
Confidence 6789999999999999999988778999998865543 3333322 1 25566777765431 1123578
Q ss_pred cceEEEehh
Q psy11741 180 SLDIVLLIF 188 (352)
Q Consensus 180 ~fD~V~~~~ 188 (352)
+.|+.+.+.
T Consensus 81 kld~L~NNA 89 (289)
T KOG1209|consen 81 KLDLLYNNA 89 (289)
T ss_pred ceEEEEcCC
Confidence 888888643
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.081 Score=40.74 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=46.7
Q ss_pred ceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhH-HHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCcccc
Q psy11741 159 RCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNK-MQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQ 237 (352)
Q Consensus 159 ~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 237 (352)
.+++..+|+.+ .++.-...||+|+....--.-+++. -..+++.++++++|||.+.-..
T Consensus 32 ~L~L~~gDa~~---~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys------------------ 90 (124)
T PF05430_consen 32 TLTLWFGDARE---MLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS------------------ 90 (124)
T ss_dssp EEEEEES-HHH---HHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-------------------
T ss_pred EEEEEEcHHHH---HHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee------------------
Confidence 45666777753 1221236789988754322222222 2468999999999999876631
Q ss_pred CceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 238 DNFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
....++..|.++||.+...
T Consensus 91 ---------------~a~~Vr~~L~~aGF~v~~~ 109 (124)
T PF05430_consen 91 ---------------SAGAVRRALQQAGFEVEKV 109 (124)
T ss_dssp ----------------BHHHHHHHHHCTEEEEEE
T ss_pred ---------------chHHHHHHHHHcCCEEEEc
Confidence 2345888999999998654
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=91.03 E-value=1.3 Score=40.20 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=59.4
Q ss_pred CCCeEEEEcCC-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC---CCCCCCcce
Q psy11741 107 STKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN---PPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~---~~~~~~~fD 182 (352)
++.+||..||| .|..+..+++. .+.+|++++.++...+.+++.. +..+..+ .+.... .....+.+|
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~---~G~~V~~~~~s~~~~~~~~~~g------~~~~~~~-~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKA---MGAAVIAVDIKEEKLELAKELG------ADEVLNS-LDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHHhC------CCEEEcC-CCcCHHHHHHHhcCCCce
Confidence 36788888876 36777777776 5678999999999888886531 1111111 110000 012345799
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+..... ...+..+.+.|+++|.++...
T Consensus 235 ~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 235 VIFDFVGT--------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEEECCCC--------HHHHHHHHHHhhcCCEEEEEC
Confidence 88753211 235777889999999988753
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG2651|consensus | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.39 Score=43.72 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH 152 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~ 152 (352)
+-..|+|+|.|.|.++..++-. .+..|.+||-|....+.|++.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~---y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLG---YGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhc---cCceEEEeccchHHHHHHHHH
Confidence 3568999999999999998875 678999999998887777643
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.11 Score=40.73 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=49.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..-|||+|=|.|+.--.|.+.+ |+-.|+++|-.-. .+....++.-.++.+|+.+....++.-..+.-++.+-
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~--p~R~I~vfDR~l~------~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD 100 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIF--PDRRIYVFDRALA------CHPSSTPPEEDLILGDIRETLPALARFGAGAALAHAD 100 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH----SS-EEEEESS--------S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE-
T ss_pred CCceEEeccCCCccHHHHHHhC--CCCeEEEEeeecc------cCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEee
Confidence 5679999999999999999988 8889999986332 1222223445677787764210011112333444443
Q ss_pred hhhhccCh--hHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 188 FVLDAINP--NKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 188 ~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
...++-.. .....+-.-+..+|.|||+++-.
T Consensus 101 ~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 101 IGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp ---S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred cCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 33222110 11112223466889999998875
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.82 Score=45.49 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=67.2
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
.+|+= ||.|+++..+++.+...+..++.+|.+++.++.+++. ....+.+|+++...-....-.+.|++++..
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 401 PQVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY------GYKVYYGDATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred CCEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------CCeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence 35555 5566688888777655788999999999999988753 256889999864311111234678777642
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhh
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQ 227 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 227 (352)
+.++....+-...+.+.|...++....++.+...
T Consensus 473 -----~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~ 506 (601)
T PRK03659 473 -----NEPEDTMKIVELCQQHFPHLHILARARGRVEAHE 506 (601)
T ss_pred -----CCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH
Confidence 2223333344445567888888887665544333
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.5 Score=43.20 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=59.2
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
.+|+=+|| |..+..+++.+...+..++.+|.+++.++.+++. ....+.+|..+...-....-++.|.+++.-
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~viv~~ 489 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER------GIRAVLGNAANEEIMQLAHLDCARWLLLTI 489 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC------CCeEEEcCCCCHHHHHhcCccccCEEEEEc
Confidence 45555555 5578888887765778999999999988888753 367889999864311111234678665431
Q ss_pred hhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 189 VLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 189 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
. ++++-..+... .+...|...++..
T Consensus 490 ~----~~~~~~~iv~~-~~~~~~~~~iiar 514 (558)
T PRK10669 490 P----NGYEAGEIVAS-AREKRPDIEIIAR 514 (558)
T ss_pred C----ChHHHHHHHHH-HHHHCCCCeEEEE
Confidence 1 11122223333 3445677666664
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.16 E-value=1.8 Score=42.84 Aligned_cols=105 Identities=11% Similarity=0.153 Sum_probs=61.1
Q ss_pred CeEEEEcCCccccHHHHHhhcC--CCCeEEEEEeCCHHHHHHHHhc---cccC-------CCceEEEEecCCCCCCC---
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCK--NDNVFVYGCDFSENAVNILKEH---EEYK-------PDRCHAFVCDVTSEDWN--- 173 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~l~~a~~~---~~~~-------~~~v~~~~~d~~~~~~~--- 173 (352)
..|+-+|+|-|-+.....++.. ....+|++|+.++..+.....+ .... +..|+++..|++.-...
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 4689999999987666555432 1356899999996643333222 1122 45699999999864211
Q ss_pred ----CCCCCCcceEEEehhhhhccC-hhHHHHHHHHHHHhcCC----CEE
Q psy11741 174 ----PPFAPESLDIVLLIFVLDAIN-PNKMQHVINQVYKYLKP----GGM 214 (352)
Q Consensus 174 ----~~~~~~~fD~V~~~~~l~~~~-~~~~~~~l~~~~~~Lkp----gG~ 214 (352)
+|..-+++|+|++- .|..+. .+--...|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 11112479999982 222221 12223455555666654 665
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.60 E-value=4 Score=37.23 Aligned_cols=128 Identities=15% Similarity=0.198 Sum_probs=78.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+++|+-||.|.+..-+.. .|. -+.++|+++.+++.-+.+... ......|+..... ..+....+|+++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~----agf~~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~-~~~~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEE----AGFEIVFANEIDPPAVATYKANFPH----GDIILGDIKELDG-EALRKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHh----cCCeEEEEEecCHHHHHHHHHhCCC----CceeechHhhcCh-hhccccCCCEEEe
Confidence 46899999999999988877 444 457899999999998888653 3455666654321 1111117899998
Q ss_pred hhhhhccCh-------hH----HHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHH
Q psy11741 187 IFVLDAINP-------NK----MQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTRE 255 (352)
Q Consensus 187 ~~~l~~~~~-------~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (352)
..-.+.++. ++ +..-+.++...++| -.+++ +..+. + +.. ..-..+
T Consensus 74 GpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~-ENV~g----l-------~~~-----------~~~~~~ 129 (328)
T COG0270 74 GPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVL-ENVKG----L-------LSS-----------KGQTFD 129 (328)
T ss_pred CCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEE-ecCch----H-------Hhc-----------CchHHH
Confidence 543333311 12 22334455566778 33444 32211 0 000 113578
Q ss_pred HHHHHHHhCCCce
Q psy11741 256 EVKTMFESAGFVE 268 (352)
Q Consensus 256 ~~~~ll~~~Gf~~ 268 (352)
.+...|++.||.+
T Consensus 130 ~i~~~L~~~GY~~ 142 (328)
T COG0270 130 EIKKELEELGYGV 142 (328)
T ss_pred HHHHHHHHcCCcc
Confidence 8999999999973
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=89.45 E-value=2.2 Score=38.76 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=46.9
Q ss_pred EEEEcCCccccHHHHHhhcCCCCeEE-EEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 111 ILEIGCGVGNSVFPIVEHCKNDNVFV-YGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 111 vLD~GcG~G~~~~~l~~~~~~~~~~v-~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
|+|+-||.|.++.-+.. .|.++ .++|+++.+.+.-+.+... ....+|+.+.... .+ ..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~----aG~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~-~~--~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQ----AGFKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPS-DI--PDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHH----cCCeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhh-hC--CCcCEEEecC
Confidence 58999999999988876 55665 5799999999998887632 3456777653210 11 2589998743
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.38 E-value=1.1 Score=41.30 Aligned_cols=110 Identities=19% Similarity=0.277 Sum_probs=58.7
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEE-EEecCCCCCC---CCCCCCCcceE
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHA-FVCDVTSEDW---NPPFAPESLDI 183 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~-~~~d~~~~~~---~~~~~~~~fD~ 183 (352)
.+|-=+ |-|..++++|..+...|.+|+|+|+++..++..++-.... .+...- +..-+....+ ..+..-...|+
T Consensus 10 ~~I~Vi--GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv 87 (436)
T COG0677 10 ATIGVI--GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDV 87 (436)
T ss_pred eEEEEE--ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCE
Confidence 445445 4566777777776658899999999999888776432110 000000 0000000000 00101124566
Q ss_pred EEehh-h-hh---ccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIF-V-LD---AINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~-~-l~---~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++..- + +. .-+........+.+.+.|++|-.+++..-
T Consensus 88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST 129 (436)
T COG0677 88 FIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST 129 (436)
T ss_pred EEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 54411 1 11 11234567888999999999988777543
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.28 E-value=1.3 Score=38.20 Aligned_cols=110 Identities=16% Similarity=0.090 Sum_probs=60.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH-HHHHHHHhccccCCCceEEEEecCCCCCCCCCC------CCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE-NAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF------APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~~ 180 (352)
++++|-.|+. |.++..+++.+...+.+|++++.+. ...+.........+.++.++.+|+.+...-... .-+.
T Consensus 6 ~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (248)
T PRK07806 6 GKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG 84 (248)
T ss_pred CcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 6788888864 4566666666544788898887653 223332222222234577888998753210000 0135
Q ss_pred ceEEEehhhhhcc-----------ChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDAI-----------NPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~~-----------~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.|+|+.+...... +..-...+++.+.+.++.+|.+++.
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 7887765432111 1112445677777777666666654
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=88.93 E-value=8 Score=37.62 Aligned_cols=110 Identities=10% Similarity=0.170 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcC--CCCeEEEEEeCCHHHHHHHHhccccC---CCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCK--NDNVFVYGCDFSENAVNILKEHEEYK---PDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
++..|.|..||+|.+......... .....++|.+....+...|+.+..-. +.......+|-.... .......|
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~--d~~~~~~~ 294 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTK--EWENENGF 294 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCc--cccccccC
Confidence 357899999999998876544321 12356899999999999998764221 112222233322110 00123457
Q ss_pred eEEEehhh---------------------hhccC--hhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 182 DIVLLIFV---------------------LDAIN--PNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 182 D~V~~~~~---------------------l~~~~--~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
|.|+++-- .|.++ ...-..++..+..+|++||...+.
T Consensus 295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred CEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 77665221 11111 123346777788899999975554
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.90 E-value=3 Score=37.96 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=55.7
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+||=.|+|. |..+..+++. .|.++++++.++.-++.+++.-.. .+ .|..+ . ..+.+|++
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~---~G~~vi~~~~~~~~~~~a~~~Ga~------~v-i~~~~----~--~~~~~d~~ 227 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALA---QGATVHVMTRGAAARRLALALGAA------SA-GGAYD----T--PPEPLDAA 227 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHH---CCCeEEEEeCChHHHHHHHHhCCc------ee-ccccc----c--CcccceEE
Confidence 3478999999753 3344555555 567899999999888888764221 11 11111 0 12357876
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+..... ...+....+.|++||.+++.-
T Consensus 228 i~~~~~--------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAPA--------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EECCCc--------HHHHHHHHHhhCCCcEEEEEe
Confidence 542211 135777888999999988754
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG2918|consensus | Back alignment and domain information |
|---|
Probab=88.62 E-value=13 Score=33.28 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=91.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----------------------CceEEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----------------------DRCHAFVC 165 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----------------------~~v~~~~~ 165 (352)
...|+.+|||.-.....|..........++=||.++.....+....+... ++-...-+
T Consensus 88 ~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g~ 167 (335)
T KOG2918|consen 88 KKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIGC 167 (335)
T ss_pred ceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeeecc
Confidence 67899999999998888887653356678889998876666622211100 11112222
Q ss_pred cCCCCCC------CCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCc
Q psy11741 166 DVTSEDW------NPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDN 239 (352)
Q Consensus 166 d~~~~~~------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
|+.+... .-....+-.-++++-.++.+++++.-..+++.+.+....++.+....+++.+.-.-.+ ..+
T Consensus 168 DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM------~~n 241 (335)
T KOG2918|consen 168 DLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVM------LAN 241 (335)
T ss_pred chhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHH------HHH
Confidence 2221100 0001112223444455778888888888999998887777777666555443211111 011
Q ss_pred eeec--CCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 240 FYAR--GDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 240 ~~~~--~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
+-.+ .-.+...+.+.+..+.-+.++||+.+..
T Consensus 242 lk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a 275 (335)
T KOG2918|consen 242 LKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIA 275 (335)
T ss_pred HHhcCCCCchhhhcccHHHHHHHHHhcCCceeeh
Confidence 1111 1123335678999999999999998765
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.54 E-value=1.1 Score=38.90 Aligned_cols=95 Identities=22% Similarity=0.306 Sum_probs=57.5
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC---CCCCCcce
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP---PFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~~fD 182 (352)
++.+||-.|+|+ |..+..+++. .+.++++++.++...+.++.... . ..+ +........ ....+.+|
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~---~g~~v~~~~~~~~~~~~~~~~g~---~--~~~--~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKA---AGARVIVTDRSDEKLELAKELGA---D--HVI--DYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCeEEEEcCCHHHHHHHHHhCC---c--eec--cCCcCCHHHHHHHhcCCCCC
Confidence 478999999986 5566666665 56799999999888777754311 0 111 111100000 01235699
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+....- . ..+..+.+.|+++|.++...
T Consensus 204 ~vi~~~~~-----~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVGG-----P---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCCC-----H---HHHHHHHHhcccCCEEEEEc
Confidence 99864221 1 34666778889999988753
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=87.89 E-value=2.1 Score=39.39 Aligned_cols=94 Identities=14% Similarity=0.166 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeC---CHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDF---SENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~---s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
++.+||=+|||. |.++..+++. .+.++++++. ++.-++.+++.-. ..+ +..+.........+.+|
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~---~G~~vi~~~~~~~~~~~~~~~~~~Ga------~~v--~~~~~~~~~~~~~~~~d 240 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRL---RGFEVYVLNRRDPPDPKADIVEELGA------TYV--NSSKTPVAEVKLVGEFD 240 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHcCC------EEe--cCCccchhhhhhcCCCC
Confidence 477899888864 4455666665 5668999986 6777777765321 111 11111000000124689
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+-... . ...+....++|++||.+++.-
T Consensus 241 ~vid~~g-----~---~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 241 LIIEATG-----V---PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EEEECcC-----C---HHHHHHHHHHccCCcEEEEEe
Confidence 8876432 1 125677888999999887654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=87.84 E-value=9.8 Score=35.45 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhc-----CCCCeEEEEEeC----CHHHHHHHHhcccc----CCCceEEEEecCCCCC--
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHC-----KNDNVFVYGCDF----SENAVNILKEHEEY----KPDRCHAFVCDVTSED-- 171 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~-----~~~~~~v~gvD~----s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~-- 171 (352)
+..+|+|+|.|.|.-=..|.+.+ +.|..++|||+. +...++.+.++... .+...+|...-.....
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 46789999999996333333333 225679999999 77777777666432 2333444442111110
Q ss_pred --CCCCCCCCcceEEEehhhhhccCh-----hH-HHHHHHHHHHhcCCCEEEEEE
Q psy11741 172 --WNPPFAPESLDIVLLIFVLDAINP-----NK-MQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 172 --~~~~~~~~~fD~V~~~~~l~~~~~-----~~-~~~~l~~~~~~LkpgG~l~~~ 218 (352)
..+...++..=+|-|.+.+|++.. .+ ...+|+. .+.|+|.-++++.
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~vvv~~E 243 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPKVVVLVE 243 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCCEEEEEe
Confidence 012223344444555667888831 12 3345554 4568999666554
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=3.9 Score=34.91 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=63.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC------CCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP------PFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~~~f 181 (352)
+++||=.|++ |.++..+++.+...|.+|++++-++..++.+.+..... .++.++.+|+.+..... ...-+.+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-GNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 6789999986 55666666665447889999999887665553333222 35788889887532000 0001346
Q ss_pred eEEEehhhhhcc-C---h-----------hHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 182 DIVLLIFVLDAI-N---P-----------NKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~-~---~-----------~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|.++........ . . .-...+++.+...++++|.+++..
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 777764432110 0 0 112234555666677788776643
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.75 E-value=3.6 Score=36.09 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=68.9
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCC-CCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPF-APESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~-~~~~f 181 (352)
+...++.|+-+| -.-..+++++. ....-++..+|+++..+....+.++..+ .+++....|+.+ ++|. -.+.|
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aL--t~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~---plpe~~~~kF 222 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALAL--TGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN---PLPEDLKRKF 222 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHh--cCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc---cChHHHHhhC
Confidence 344578899998 33334444433 2255589999999999999988877655 459999999986 3331 14689
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCC---EEEEEEe
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPG---GMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~ 219 (352)
|+++..- -+.+ ..+..++.+=...||.- |++.++.
T Consensus 223 DvfiTDP-peTi--~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 223 DVFITDP-PETI--KALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred CeeecCc-hhhH--HHHHHHHhccHHHhcCCCccceEeeee
Confidence 9887521 1111 33445555555667654 7777753
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.73 E-value=2.5 Score=36.98 Aligned_cols=110 Identities=13% Similarity=0.021 Sum_probs=63.1
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCc
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPES 180 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 180 (352)
++.+|=.|+++ +.++..+++.+...|.+|+.++.+....+.+.+..... ..+.++.+|+.+...- ....-+.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 88 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL-DAPIFLPLDVREPGQLEAVFARIAEEWGR 88 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh-ccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence 67899999887 36777777766557889988888764433222222111 2245677888753210 0001256
Q ss_pred ceEEEehhhhhc----------cChhHHHHH-----------HHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDA----------INPNKMQHV-----------INQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~----------~~~~~~~~~-----------l~~~~~~LkpgG~l~~~ 218 (352)
.|+++.+..+.. .+.+++... .+.+...++.+|.++..
T Consensus 89 ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 89 LDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred CCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 899887654321 223334333 35566667777776653
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=87.18 E-value=1.8 Score=43.19 Aligned_cols=103 Identities=12% Similarity=0.082 Sum_probs=64.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|+=+||| +++..+++.+...+..++.+|.+++.++.+++. ....+.+|.++...-....-++.|++++.
T Consensus 400 ~~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 3567776665 466666666554678999999999999988653 25688999986431111123467877764
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
. +.++....+-...+.+.|.-.++....+..
T Consensus 472 ~-----~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~ 502 (621)
T PRK03562 472 I-----DDPQTSLQLVELVKEHFPHLQIIARARDVD 502 (621)
T ss_pred e-----CCHHHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence 2 223333334445555678777776654443
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.06 E-value=4.7 Score=34.64 Aligned_cols=81 Identities=20% Similarity=0.044 Sum_probs=51.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
+++||=.|+ +|.++..+++.+...+.++++++.++..+....+.....+.++.++.+|+.+...-.. + .-+.+
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 85 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL 85 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 677886665 5667777777665478899999988876665544433333568888999875321000 0 01468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+.+..
T Consensus 86 d~vi~~ag 93 (250)
T PRK12939 86 DGLVNNAG 93 (250)
T ss_pred CEEEECCC
Confidence 88887543
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.85 E-value=2.8 Score=38.39 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCccc-cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGN-SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~-~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+||=+|||.=. .+..+++... .+.+|+++|.++.-++.+++ +. . . ....+.. ....+|+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~-g~~~vi~~~~~~~k~~~a~~-~~---~-~-~~~~~~~--------~~~g~d~vi 227 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIY-PESKLVVFGKHQEKLDLFSF-AD---E-T-YLIDDIP--------EDLAVDHAF 227 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc-CCCcEEEEeCcHhHHHHHhh-cC---c-e-eehhhhh--------hccCCcEEE
Confidence 47899999985422 3344555321 34589999999988888764 21 1 1 1111111 112488887
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
-... . ......+....++|++||.+++.-
T Consensus 228 D~~G--~---~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 ECVG--G---RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ECCC--C---CccHHHHHHHHHhCcCCcEEEEEe
Confidence 4321 0 112346777888999999988754
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=86.82 E-value=0.78 Score=35.13 Aligned_cols=91 Identities=22% Similarity=0.323 Sum_probs=47.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|+|+|-|.=......++. .|..|+++|+.+. ++ ...+.++..|+.++...+ -...|+|++.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~---~G~dV~~tDi~~~-------~a---~~g~~~v~DDif~P~l~i---Y~~a~lIYSi 77 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKE---RGFDVIATDINPR-------KA---PEGVNFVVDDIFNPNLEI---YEGADLIYSI 77 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHH---HS-EEEEE-SS-S--------------STTEE---SSS--HHH---HTTEEEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHH---cCCcEEEEECccc-------cc---ccCcceeeecccCCCHHH---hcCCcEEEEe
Confidence 459999999886533333332 6789999999986 11 134789999998643111 1357888874
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
. ++.++...+.++++.+ |.-+++...+
T Consensus 78 R-----PP~El~~~il~lA~~v--~adlii~pL~ 104 (127)
T PF03686_consen 78 R-----PPPELQPPILELAKKV--GADLIIRPLG 104 (127)
T ss_dssp S-------TTSHHHHHHHHHHH--T-EEEEE-BT
T ss_pred C-----CChHHhHHHHHHHHHh--CCCEEEECCC
Confidence 3 3456666666666644 4557776443
|
; PDB: 2K4M_A. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.79 E-value=3.5 Score=37.77 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+||=.|||. |..+..+++. .+. +|+++|.++.-++.+++.-... -+.....++. ......+.+|+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~---~G~~~Vi~~~~~~~~~~~a~~lGa~~--vi~~~~~~~~----~~~~~~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKT---LGAAEIVCADVSPRSLSLAREMGADK--LVNPQNDDLD----HYKAEKGYFDVS 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCcEEEEEeCCHHHHHHHHHcCCcE--EecCCcccHH----HHhccCCCCCEE
Confidence 377888888742 3344555554 455 6899999999999887642110 0000011111 111112358988
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+-... . ...+..+.++|++||.+++..
T Consensus 240 id~~G-----~---~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 FEVSG-----H---PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EECCC-----C---HHHHHHHHHHhhcCCEEEEEc
Confidence 75322 1 235666778899999988754
|
|
| >KOG2078|consensus | Back alignment and domain information |
|---|
Probab=86.59 E-value=0.58 Score=43.30 Aligned_cols=60 Identities=20% Similarity=0.352 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC---CCceEEEEecCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK---PDRCHAFVCDVTS 169 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~---~~~v~~~~~d~~~ 169 (352)
.++..|.|+-||.|-++.+++. .+..|++-|.++++++..+.++..+ +.++..+.+|+..
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~k----K~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAK----KGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred CCcchhhhhhcCcCccccchhh----cCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 4578899999999999999998 7789999999999999999987643 2347777777654
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=86.58 E-value=9.1 Score=30.94 Aligned_cols=97 Identities=11% Similarity=0.167 Sum_probs=61.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~V~~ 186 (352)
..+|+-|||=+-...+. + ...++.+++..|++... ...+.+ .|+.-|...+. .++ .-.++||+|++
T Consensus 26 ~~~iaclstPsl~~~l~--~-~~~~~~~~~Lle~D~RF--------~~~~~~-~F~fyD~~~p~-~~~~~l~~~~d~vv~ 92 (162)
T PF10237_consen 26 DTRIACLSTPSLYEALK--K-ESKPRIQSFLLEYDRRF--------EQFGGD-EFVFYDYNEPE-ELPEELKGKFDVVVI 92 (162)
T ss_pred CCEEEEEeCcHHHHHHH--h-hcCCCccEEEEeecchH--------HhcCCc-ceEECCCCChh-hhhhhcCCCceEEEE
Confidence 67999999977443322 2 11267789999998743 222333 56777776543 222 11579999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
-=-+ ++.+-+.+....+.-++++++.+++.+
T Consensus 93 DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 93 DPPF--LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred CCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 4332 444555667777777779988888864
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences | Back alignment and domain information |
|---|
Probab=86.39 E-value=5.6 Score=42.17 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=77.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+..+||+|.|.=.=.+.+.. +..-|+.+|.-|..- ..........|++.|.....+. ....+|.+.|.
T Consensus 823 ~~~~lDLGTGPE~RiLsliP----~~~pvtmvD~RP~ae-----~m~~w~t~T~y~~~DYl~~~~~---~~~~~D~vtai 890 (1289)
T PF06016_consen 823 PDHWLDLGTGPECRILSLIP----PDTPVTMVDTRPFAE-----PMNCWNTQTQYIQADYLSDAWW---NGTPFDAVTAI 890 (1289)
T ss_dssp C-CEEEET--TT-CHHHCS-----TTSEEEEEESS--SS-----SCCCCSTTEEEEES-TTSCCGG---CC---SEEEEC
T ss_pred cceEEEccCCccceeeeccC----CCCceEEEecCCccc-----ccchhhhcceeeeeccccceeE---ecCCCCEEEEE
Confidence 67899999988655555554 778999999977421 1111224578999999875542 24679999998
Q ss_pred hhhhcc---ChhHHHHHHHHHHHhcCCCE--EEEEEeCCCCchhh-HhhhcCccccCcee-ecCCCeeeeccCHHHHHHH
Q psy11741 188 FVLDAI---NPNKMQHVINQVYKYLKPGG--MVLFRDYGRYDLVQ-LRFKKGRCLQDNFY-ARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 188 ~~l~~~---~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 260 (352)
++|... ..-++...++.+.+.+++.| .+++....+-.... .+-..........| ....+....+.+.+++.++
T Consensus 891 lSLGAAaA~a~~tl~~~l~~~l~~~~~~~~~~l~lQLNcPl~~~~~v~~~LeId~~~~~Y~F~~~~R~EPY~~~~~l~~~ 970 (1289)
T PF06016_consen 891 LSLGAAAASANVTLDAGLQQFLSQCVQANVKRLWLQLNCPLDSSRSVRGLLEIDTTNKTYVFPTLGRVEPYIDPDDLEQA 970 (1289)
T ss_dssp TCHHHHHHHCT--HHHHHHHHHHHHHCTT-SEEEEE-B--SSSS--BTTTEEEETTTTEEEETTTTEEEEB--HHHHHHH
T ss_pred eeehhhhhcCCCcHHHHHHHHHHHHHhCCccEEEEEecCCCCCCCCCCceEEEeccccEEEcCCCCcCCCCCCHHHHHHH
Confidence 777544 33477888999988888776 46665332221110 00000001111222 3344566677888888888
Q ss_pred HHhC
Q psy11741 261 FESA 264 (352)
Q Consensus 261 l~~~ 264 (352)
+++.
T Consensus 971 i~~~ 974 (1289)
T PF06016_consen 971 IRAH 974 (1289)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A. |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.34 E-value=2.8 Score=36.62 Aligned_cols=78 Identities=12% Similarity=0.025 Sum_probs=48.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|++ |.++..+++.+...|.+|+.+|.++..++...+.. +.++.++.+|+.+...-.. + .-+..
T Consensus 6 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 6 GKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 5678888754 45666666666447889999999876554443322 3457888999986421000 0 01467
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 82 d~lv~~ag 89 (261)
T PRK08265 82 DILVNLAC 89 (261)
T ss_pred CEEEECCC
Confidence 88887543
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.34 E-value=2.1 Score=43.32 Aligned_cols=110 Identities=23% Similarity=0.248 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
++++||=.|++ |.++..+++.+...|.+|+++|.++..++.+....... .++.++.+|+.+...-.. + ..+.
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 45788887764 44556666655447889999999988776655443222 357888899875321000 0 1246
Q ss_pred ceEEEehhhhhcc------ChhH-----------HHHHHHHHHHhcCC---CEEEEEE
Q psy11741 181 LDIVLLIFVLDAI------NPNK-----------MQHVINQVYKYLKP---GGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~~------~~~~-----------~~~~l~~~~~~Lkp---gG~l~~~ 218 (352)
+|+|+.+...... +.++ ...+++.+.+.+++ ||.+++.
T Consensus 499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 8998876543211 1111 23456666777765 5776664
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=86.04 E-value=3.1 Score=37.87 Aligned_cols=94 Identities=15% Similarity=0.282 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC-CCCCCCCcceE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW-NPPFAPESLDI 183 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~fD~ 183 (352)
++.+||-.|||. |..+..+++. .|. ++++++.++...+.+++... . .++ |...... ......+.+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~---~G~~~v~~~~~s~~~~~~~~~~g~---~--~vi--~~~~~~~~~~~~~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARR---AGAAEIVATDLADAPLAVARAMGA---D--ETV--NLARDPLAAYAADKGDFDV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCcEEEEECCCHHHHHHHHHcCC---C--EEE--cCCchhhhhhhccCCCccE
Confidence 478888888876 6666667775 565 78999999988887655321 0 111 1111000 11111235899
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
|+..... ...++.+.+.|+++|.++..
T Consensus 235 vld~~g~--------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 235 VFEASGA--------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EEECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 8864221 12466778899999998864
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=86.01 E-value=2.2 Score=41.22 Aligned_cols=102 Identities=13% Similarity=0.189 Sum_probs=62.3
Q ss_pred CCCCCeEEEEcCCccc-cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCC-----------C
Q psy11741 105 TCSTKNILEIGCGVGN-SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSED-----------W 172 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~-~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-----------~ 172 (352)
..++.+||=+|||.=. .+..+++. .|..|+++|.++.-++.++..- ..++..|..+.. .
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~---lGA~V~v~d~~~~rle~a~~lG------a~~v~v~~~e~g~~~~gYa~~~s~ 231 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANS---LGAIVRAFDTRPEVKEQVQSMG------AEFLELDFKEEGGSGDGYAKVMSE 231 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHcC------CeEEeccccccccccccceeecCH
Confidence 3457899999998753 33444444 5678999999999888887631 223333321100 0
Q ss_pred C--------CCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 173 N--------PPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 173 ~--------~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
+ ++..-..+|+|+....+..- ..+.-+.+++.+.+|||++++-
T Consensus 232 ~~~~~~~~~~~e~~~~~DIVI~TalipG~--~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 232 EFIAAEMELFAAQAKEVDIIITTALIPGK--PAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcccCCC--CCCeeehHHHHhhCCCCCEEEE
Confidence 0 11012469999876544332 2334567888999999988663
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.88 E-value=3.8 Score=36.60 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=60.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH-HHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN-AVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
+++||=.|++. .++..+++.+...|.+|+.++.++. .++.........+.++.++.+|+.+...-.. + .-+.
T Consensus 46 ~k~iLItGasg-gIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~ 124 (290)
T PRK06701 46 GKVALITGGDS-GIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR 124 (290)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 67888888654 4566666655447888988887642 2333222222234567788999875321000 0 0135
Q ss_pred ceEEEehhhhhc-------cChh-----------HHHHHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDA-------INPN-----------KMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~-------~~~~-----------~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|+|+.+..... .+.+ -...+++.+.+.++++|.+++.
T Consensus 125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 788876543211 1111 2234455566666777776664
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=85.63 E-value=1.4 Score=35.67 Aligned_cols=115 Identities=18% Similarity=0.153 Sum_probs=66.6
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+|-=||+ |..+..+++.+...+..|++.|.++...+...+.. +. ...+..+ + -...|+|++.-.
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g------~~-~~~s~~e----~---~~~~dvvi~~v~ 66 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG------AE-VADSPAE----A---AEQADVVILCVP 66 (163)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT------EE-EESSHHH----H---HHHBSEEEE-SS
T ss_pred EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh------hh-hhhhhhh----H---hhcccceEeecc
Confidence 3444666 45677777766547889999999998777665541 11 1122211 0 134588876421
Q ss_pred hhccChhHHHHHHHH--HHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 190 LDAINPNKMQHVINQ--VYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 190 l~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
+.+....++.. +...|++|.+++-..-.. .-+..++.+.+++.|..
T Consensus 67 ----~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~----------------------------p~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 67 ----DDDAVEAVLFGENILAGLRPGKIIIDMSTIS----------------------------PETSRELAERLAAKGVR 114 (163)
T ss_dssp ----SHHHHHHHHHCTTHGGGS-TTEEEEE-SS------------------------------HHHHHHHHHHHHHTTEE
T ss_pred ----cchhhhhhhhhhHHhhccccceEEEecCCcc----------------------------hhhhhhhhhhhhhccce
Confidence 34667788888 888888886665432111 12345677778888876
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
.++.-
T Consensus 115 ~vdap 119 (163)
T PF03446_consen 115 YVDAP 119 (163)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 66543
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.57 E-value=6.9 Score=33.96 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCC
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPE 179 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~ 179 (352)
.++.+|-.|.++ +.++..+++.+...|.+|+.++.+....+.+++.. ...+.++.+|+.+...- ....-+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV---DEEDLLVECDVASDESIERAFATIKERVG 82 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc---cCceeEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 367889888874 56777777777558889998887654333333221 23567888998753210 000125
Q ss_pred cceEEEehhhh
Q psy11741 180 SLDIVLLIFVL 190 (352)
Q Consensus 180 ~fD~V~~~~~l 190 (352)
.+|+++.+..+
T Consensus 83 ~iD~lv~nAg~ 93 (252)
T PRK06079 83 KIDGIVHAIAY 93 (252)
T ss_pred CCCEEEEcccc
Confidence 68998876543
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.20 E-value=0.76 Score=41.01 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=36.1
Q ss_pred eEEEEecCCCCCCCCCCCCCcceEEEeh--hhh--h------ccCh----hHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 160 CHAFVCDVTSEDWNPPFAPESLDIVLLI--FVL--D------AINP----NKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 160 v~~~~~d~~~~~~~~~~~~~~fD~V~~~--~~l--~------~~~~----~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
..++++|+.+... .+++++||+|++. +.+ . .... +-....+.++.++|||||.+++.
T Consensus 9 ~~i~~gD~~~~l~--~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELK--KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHH--hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4567777765321 2346788888882 211 0 0000 22357889999999999999985
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=85.10 E-value=20 Score=34.39 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=41.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 169 (352)
..+++|+-||.|.+...+-.. ..-.|.++|+++.+.+.-+.+.... +.......|+.+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a---G~~~v~a~Eid~~A~~TY~~N~~~~-p~~~~~~~DI~~ 145 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI---GGQCVFTSEWNKHAVRTYKANWYCD-PATHRFNEDIRD 145 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc---CCEEEEEEechHHHHHHHHHHcCCC-CccceeccChhh
Confidence 569999999999999888663 2235678999999988888775311 223444566654
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=85.08 E-value=11 Score=33.69 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH--HHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE--NAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAP 178 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~ 178 (352)
.++++|-.|++ |.++..+++.+...|.+|+.++.+. ...+.........+.++.++.+|+.+...- ....-
T Consensus 48 ~~k~vlITGas-~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36788988864 5566666666654788888876542 233333332222344577888998753200 00012
Q ss_pred CcceEEEehhhh-------hccChhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 179 ESLDIVLLIFVL-------DAINPNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 179 ~~fD~V~~~~~l-------~~~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
+..|+++.+... ...+.+++. .+++.+.+.++.+|.+++.
T Consensus 127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 184 (294)
T PRK07985 127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT 184 (294)
T ss_pred CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence 457888765432 122233332 3455566666777876664
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=84.97 E-value=0.75 Score=35.34 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=56.5
Q ss_pred CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--C--CCCCCCcceEEEehhhhhc
Q psy11741 117 GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--N--PPFAPESLDIVLLIFVLDA 192 (352)
Q Consensus 117 G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~--~~~~~~~fD~V~~~~~l~~ 192 (352)
|.|..+..+++. .|.+|+++|.++.-++.+++.-. ..+ .|..+... . .......+|+|+-...
T Consensus 1 ~vG~~a~q~ak~---~G~~vi~~~~~~~k~~~~~~~Ga------~~~-~~~~~~~~~~~i~~~~~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKA---MGAKVIATDRSEEKLELAKELGA------DHV-IDYSDDDFVEQIRELTGGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHH---TTSEEEEEESSHHHHHHHHHTTE------SEE-EETTTSSHHHHHHHHTTTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHH---cCCEEEEEECCHHHHHHHHhhcc------ccc-ccccccccccccccccccccceEEEEecC---
Confidence 457788888887 45899999999999999987531 111 22221100 0 0012347999875422
Q ss_pred cChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 193 INPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 193 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
-...++....+|+|+|.+++.-..
T Consensus 68 -----~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 -----SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp -----SHHHHHHHHHHEEEEEEEEEESST
T ss_pred -----cHHHHHHHHHHhccCCEEEEEEcc
Confidence 135778888999999999987543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.55 E-value=1.6 Score=37.88 Aligned_cols=80 Identities=16% Similarity=-0.002 Sum_probs=49.7
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~ 188 (352)
++||=.|++ |.++..+++.+...|.+|++++-++...+.........+.++.++.+|+.+............|+|+.+.
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a 81 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA 81 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence 468877774 4566666665544788999998887665554443333344678889998753210011124689888754
Q ss_pred h
Q psy11741 189 V 189 (352)
Q Consensus 189 ~ 189 (352)
.
T Consensus 82 g 82 (257)
T PRK09291 82 G 82 (257)
T ss_pred C
Confidence 3
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.25 E-value=3.3 Score=36.19 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=63.2
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCC---HHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCC
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFS---ENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFA 177 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s---~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~ 177 (352)
++.+|=.|+++ +.++..+++.+...|++|+.++.+ +..++...+... +.++.++.+|+.+...- ....
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 67899999873 677778777775578899888654 233333333221 34577888999864210 0001
Q ss_pred CCcceEEEehhhhh----------ccChhHHHH-----------HHHHHHHhcCCCEEEEEE
Q psy11741 178 PESLDIVLLIFVLD----------AINPNKMQH-----------VINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 178 ~~~fD~V~~~~~l~----------~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~ 218 (352)
-+.+|+++.+..+. ..+.+++.. +.+.+...++++|.++..
T Consensus 85 ~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~i 146 (257)
T PRK08594 85 VGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTL 146 (257)
T ss_pred CCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEE
Confidence 25789887654322 112222221 234556677778876654
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=84.15 E-value=4.1 Score=38.93 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=50.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|+=+|| |.++..+++.+...+..++.+|.+++.++.+++.. ..+.++.+|..+...-....-..+|.|++.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----PNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----CCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 456777666 67888888877656889999999999888776642 235678888875321111223568887763
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.09 E-value=14 Score=32.88 Aligned_cols=81 Identities=16% Similarity=0.064 Sum_probs=50.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.|+++ .++..+++.+...|.+|+.++.++..++...+.... +..+..+.+|+.+...- ....-+.+
T Consensus 9 gk~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 86 (296)
T PRK05872 9 GKVVVVTGAAR-GIGAELARRLHARGAKLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERFGGI 86 (296)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 67888777655 456666666644788999999998877665444321 23455566888753200 00011568
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+|+.+..+
T Consensus 87 d~vI~nAG~ 95 (296)
T PRK05872 87 DVVVANAGI 95 (296)
T ss_pred CEEEECCCc
Confidence 999986654
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.37 E-value=4.2 Score=34.86 Aligned_cols=82 Identities=11% Similarity=0.010 Sum_probs=51.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
.+++|=.|+ +|.++..+++.+...+.+|++++.++...+...+.....+.++.++.+|+.+...-.. + .-+..
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP 84 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 567888885 5667777777665478899999998876555444333333567888999875321000 0 01357
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+...
T Consensus 85 d~lv~~ag~ 93 (241)
T PRK07454 85 DVLINNAGM 93 (241)
T ss_pred CEEEECCCc
Confidence 988875543
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.30 E-value=16 Score=32.01 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=47.8
Q ss_pred CCeEEEEcCCcc-ccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCc
Q psy11741 108 TKNILEIGCGVG-NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G-~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 180 (352)
++.+|=.|+++| .++..+++.+...|++|+.++.+....+.+.+.... ...+.++.+|+.+...- ..-.-+.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 84 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ-LGSDIVLPCDVAEDASIDAMFAELGKVWPK 84 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhc-cCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence 678888998763 666666666644788898888764322333222211 13356778888763210 0001256
Q ss_pred ceEEEehhhh
Q psy11741 181 LDIVLLIFVL 190 (352)
Q Consensus 181 fD~V~~~~~l 190 (352)
+|+++.+..+
T Consensus 85 iD~linnAg~ 94 (262)
T PRK07984 85 FDGFVHSIGF 94 (262)
T ss_pred CCEEEECCcc
Confidence 8998886643
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=83.27 E-value=6.2 Score=37.68 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=59.5
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+|+=+|| |.++..+++.+...+..++++|.++..++.+++. ..+.++.+|..+...-....-..+|.|++...
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-----~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-----LDVRTVVGNGSSPDVLREAGAEDADLLIAVTD 74 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-----cCEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence 4566665 7888888887765788999999999987776542 23677888876532111111346888776431
Q ss_pred hhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 190 LDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 190 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.++....+....+.+.|.-.+++.
T Consensus 75 -----~~~~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 75 -----SDETNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred -----ChHHHHHHHHHHHHhcCCCeEEEE
Confidence 123334444555556455444543
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.26 E-value=2.9 Score=38.87 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=48.5
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCC-eEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDN-VFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
.+||=||| |..+...+..+...+ .+|+..|-|....+.+..... .+++..+.|+.+...-... -..+|+|++.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---~~v~~~~vD~~d~~al~~l-i~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---GKVEALQVDAADVDALVAL-IKDFDLVINA 75 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---ccceeEEecccChHHHHHH-HhcCCEEEEe
Confidence 47899999 556666655543233 799999999988887766532 3688999998764210011 1345888873
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.17 E-value=3.9 Score=36.14 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=61.9
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-----CCCCcceE
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-----FAPESLDI 183 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~~~fD~ 183 (352)
+.+|=-|+ |.++..+++.+. .|.+|+.+|.++..++.+.+.....+.++.++.+|+.+...-.. ...+.+|+
T Consensus 3 k~~lItGa--~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 34565564 468888888886 78899999998776655544333334467888899876421000 01256899
Q ss_pred EEehhhhhccChhHH-----------HHHHHHHHHhcCCCEEEEE
Q psy11741 184 VLLIFVLDAINPNKM-----------QHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 184 V~~~~~l~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~ 217 (352)
++.+..+... ..++ ..+++.+...++++|.+++
T Consensus 80 li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 80 LVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred EEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 8876543321 1122 2334555666666665443
|
|
| >KOG3924|consensus | Back alignment and domain information |
|---|
Probab=83.15 E-value=2 Score=39.46 Aligned_cols=109 Identities=10% Similarity=0.140 Sum_probs=68.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcc----------ccCCCceEEEEecCCCCCCCC
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE----------EYKPDRCHAFVCDVTSEDWNP 174 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~----------~~~~~~v~~~~~d~~~~~~~~ 174 (352)
..++....|+|+|.|.....++... ....-+|+++....-+.|..+. ......+..+.+++..... .
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a--~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~-v 266 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYA--GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKR-V 266 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhh--ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHH-H
Confidence 3347788999999999988887764 3335577777654444443321 1223456777777764321 1
Q ss_pred CCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 175 PFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 175 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
..-....++|+++++.. + +++..-+.++..-+++|.+++-..
T Consensus 267 ~eI~~eatvi~vNN~~F--d-p~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 267 TEIQTEATVIFVNNVAF--D-PELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred HHHhhcceEEEEecccC--C-HHHHHhhHHHHhhCCCcceEeccc
Confidence 11134678888877643 3 344444558888999998887654
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.06 E-value=4.5 Score=35.96 Aligned_cols=86 Identities=19% Similarity=0.140 Sum_probs=50.4
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+|.=||+| .++..++..+...+.+|+++|.++..++.+..... +.....+. . .-...|+|+..-
T Consensus 2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~-----~~~~~~~~-------~-~~~~aDlVilav- 65 (279)
T PRK07417 2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL-----VDEASTDL-------S-LLKDCDLVILAL- 65 (279)
T ss_pred eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-----cccccCCH-------h-HhcCCCEEEEcC-
Confidence 35556665 34444444443367799999999988887765411 11110111 0 123578888753
Q ss_pred hhccChhHHHHHHHHHHHhcCCCEEE
Q psy11741 190 LDAINPNKMQHVINQVYKYLKPGGMV 215 (352)
Q Consensus 190 l~~~~~~~~~~~l~~~~~~LkpgG~l 215 (352)
++.....+++++...++|+.++
T Consensus 66 ----p~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 66 ----PIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ----CHHHHHHHHHHHHHhCCCCcEE
Confidence 4455567788888888877433
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=82.96 E-value=19 Score=30.52 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=59.7
Q ss_pred CCeEEEEcCCccc--cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGN--SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~--~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
.+.|++++|+.|. .++.|+.+-..-+.++++|-+.+..+...++.....+ ..++|+.++..+. -++ .-...|+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~--~~~-~~~~iDF 118 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEE--VMP-GLKGIDF 118 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHH--HHh-hccCCCE
Confidence 5678999776543 3455544433367789999998887777776665433 3468888874321 111 1245788
Q ss_pred EEehhhhhccChhHHH-HHHHHHHHhcCCCEEEEEE
Q psy11741 184 VLLIFVLDAINPNKMQ-HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~-~~l~~~~~~LkpgG~l~~~ 218 (352)
++...- .++.. .+|+.+. +.|.|-+++.
T Consensus 119 ~vVDc~-----~~d~~~~vl~~~~--~~~~GaVVV~ 147 (218)
T PF07279_consen 119 VVVDCK-----REDFAARVLRAAK--LSPRGAVVVC 147 (218)
T ss_pred EEEeCC-----chhHHHHHHHHhc--cCCCceEEEE
Confidence 776432 24444 5555432 4556666654
|
The function of this family is unknown. |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.79 E-value=2.6 Score=33.76 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=30.0
Q ss_pred EEcCCcc--ccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhc--ccc--CCCceEEEEecC
Q psy11741 113 EIGCGVG--NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEY--KPDRCHAFVCDV 167 (352)
Q Consensus 113 D~GcG~G--~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~--~~~--~~~~v~~~~~d~ 167 (352)
|||++.| ..+..++.....++.+++++|+++..++..+++ ..- ....+++....+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 544444321112678999999999999988887 321 112356665544
|
; PDB: 2PY6_A. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=82.70 E-value=6.7 Score=34.42 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeE-EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVF-VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+||=.|||. |..+..+++. .+.+ +++++.++...+.+++.-. ...+ .. ... .. .....+|+|
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~---~g~~~vi~~~~~~~~~~~~~~~g~--~~~~--~~--~~~---~~-~~~~~~d~v 163 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKA---AGAREVVGVDPDAARRELAEALGP--ADPV--AA--DTA---DE-IGGRGADVV 163 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCCcEEEECCCHHHHHHHHHcCC--Cccc--cc--cch---hh-hcCCCCCEE
Confidence 377888888865 5566666665 4556 9999999988887765420 0101 00 000 00 123468988
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+....- ...+....+.|+++|.++..
T Consensus 164 l~~~~~--------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 164 IEASGS--------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEccCC--------hHHHHHHHHHhcCCcEEEEE
Confidence 753210 12566677889999998764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.63 E-value=2.5 Score=38.58 Aligned_cols=81 Identities=12% Similarity=0.001 Sum_probs=52.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCC------CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF------APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~~f 181 (352)
+++||=.|+++ .++..+++.+...|.+|+.++-++..++...+.....+.++.++.+|+.+...-... ..+.+
T Consensus 7 ~k~vlITGAs~-GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 85 (330)
T PRK06139 7 GAVVVITGASS-GIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRI 85 (330)
T ss_pred CCEEEEcCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 66788777754 455666665544788999999998887766555444445677888898753210000 01568
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 86 D~lVnnAG 93 (330)
T PRK06139 86 DVWVNNVG 93 (330)
T ss_pred CEEEECCC
Confidence 99888654
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.57 E-value=7.6 Score=33.86 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
..++....|+|...|.++..|.+ .+..|++||-.+- .+..- ....|+-...|-.+. .| .....|-.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVk----r~m~V~aVDng~m-a~sL~-----dtg~v~h~r~DGfk~---~P-~r~~idWm 274 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVK----RNMRVYAVDNGPM-AQSLM-----DTGQVTHLREDGFKF---RP-TRSNIDWM 274 (358)
T ss_pred hcCCceeeecccCCCccchhhhh----cceEEEEeccchh-hhhhh-----cccceeeeeccCccc---cc-CCCCCceE
Confidence 34688999999999999999999 8889999998653 22111 124567777776542 22 25678888
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPG 212 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 212 (352)
+|..+ +.+.++-..+...|..|
T Consensus 275 VCDmV------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 275 VCDMV------EKPARVAALIAKWLVNG 296 (358)
T ss_pred Eeehh------cCcHHHHHHHHHHHHcc
Confidence 88544 55566666677776654
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.52 E-value=4 Score=35.39 Aligned_cols=81 Identities=14% Similarity=0.042 Sum_probs=52.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.|+ +|.++..+++.+...|.+|+.++.++..++.........+.++.++.+|+.+...- ....-+++
T Consensus 11 ~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 89 (256)
T PRK06124 11 GQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRL 89 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 778888885 55567777766644788999999998766655444433345678889998753210 00011467
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|.|+.+..
T Consensus 90 d~vi~~ag 97 (256)
T PRK06124 90 DILVNNVG 97 (256)
T ss_pred CEEEECCC
Confidence 88887544
|
|
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=81.85 E-value=12 Score=27.29 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=47.6
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCC-eeeeccCHHHHHHHHHhCCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDG-TLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~Gf 266 (352)
.++-|.+.++..++|..+....+ |.++++.-.......+.-..|. +++.++. +..+....+++.+.+.++||
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t~--~~~ifTfAP~T~~L~~m~~iG~-----lFP~~dRsp~i~~~~e~~l~~~l~~~g~ 75 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRTR--GSLIFTFAPRTPLLALMHAIGK-----LFPRPDRSPRIYPHREEDLRRALAAAGW 75 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhcc--CcEEEEECCCCHHHHHHHHHhc-----cCCCCCCCCcEEEeCHHHHHHHHHhCCC
Confidence 34456678899999999988644 6677753322222222112222 2333333 33456788999999999999
Q ss_pred ceEEe
Q psy11741 267 VEKQN 271 (352)
Q Consensus 267 ~~~~~ 271 (352)
.+...
T Consensus 76 ~~~r~ 80 (97)
T PF07109_consen 76 RIGRT 80 (97)
T ss_pred eeeec
Confidence 87765
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.62 E-value=4.3 Score=35.18 Aligned_cols=82 Identities=16% Similarity=0.047 Sum_probs=53.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.|+ +|.++..+++.+...|++|++++.++..++.........+.++.++.+|+.+...- ....-+..
T Consensus 10 ~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 88 (255)
T PRK07523 10 GRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI 88 (255)
T ss_pred CCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 678888885 66677777776655788999999998776655544443344577888898753210 00012457
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+|+.+...
T Consensus 89 d~li~~ag~ 97 (255)
T PRK07523 89 DILVNNAGM 97 (255)
T ss_pred CEEEECCCC
Confidence 888876543
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=81.53 E-value=6.3 Score=35.46 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=51.3
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeE-EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVF-VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+||=+|||. |.++..+++. .+.+ ++++|.++..++.|.... ..|..+ . ....+|+|+
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~---~G~~~v~~~~~~~~rl~~a~~~~----------~i~~~~---~---~~~g~Dvvi 205 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKA---AGGSPPAVWETNPRRRDGATGYE----------VLDPEK---D---PRRDYRAIY 205 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHH---cCCceEEEeCCCHHHHHhhhhcc----------ccChhh---c---cCCCCCEEE
Confidence 56788888753 4455666665 4554 677898887776664321 011111 0 134589887
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
-...- ...+..+.+.|+++|.+++.-
T Consensus 206 d~~G~--------~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 206 DASGD--------PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ECCCC--------HHHHHHHHHhhhcCcEEEEEe
Confidence 53221 235667788999999988753
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.35 E-value=19 Score=32.21 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=60.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH--HHHHHHhccccCCCceEEEEecCCCCCCCCC------CCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN--AVNILKEHEEYKPDRCHAFVCDVTSEDWNPP------FAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~--~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~ 179 (352)
+++||=.|+ +|.++..+++.+...|.+|+.+..+.. ..+...+.....+.++.++.+|+.+...-.. ..-+
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 133 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELG 133 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence 578888885 455667777666447788887665432 2222222222234457788899875321000 0014
Q ss_pred cceEEEehhhhhc-------cChhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLDA-------INPNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~~-------~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
..|+++.+..... ++.+++. .+++.+.+.++++|.++..
T Consensus 134 ~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 134 GLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 6899887654321 1222222 3455566667778876664
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.25 E-value=5 Score=35.08 Aligned_cols=80 Identities=16% Similarity=0.069 Sum_probs=51.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|+ +|.++..+++.+...|++|++++.++..++...+.....+.++.++.+|+.+...-.. + .-+.+
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 88 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRL 88 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 678888885 5667777777665578899999998876665544433334567888899875321000 0 01468
Q ss_pred eEEEehh
Q psy11741 182 DIVLLIF 188 (352)
Q Consensus 182 D~V~~~~ 188 (352)
|+|+...
T Consensus 89 d~vi~~A 95 (263)
T PRK07814 89 DIVVNNV 95 (263)
T ss_pred CEEEECC
Confidence 9888754
|
|
| >KOG0821|consensus | Back alignment and domain information |
|---|
Probab=81.25 E-value=2.4 Score=35.72 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=40.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 169 (352)
..-|.+||.|.|.+++.+..+ ...++..++.++..+.-.+-..+..+.+......|+..
T Consensus 51 ~~~v~eIgPgpggitR~il~a---~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNA---DVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLR 109 (326)
T ss_pred cceeEEecCCCCchhHHHHhc---chhheeeeeeccccChHHHHHhhcCCcceEEeccccce
Confidence 678999999999999999875 33367777777766555544433333455555666553
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.97 E-value=4.8 Score=35.02 Aligned_cols=81 Identities=17% Similarity=-0.012 Sum_probs=53.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
++++|=.| |+|.++..+++.+...|.+|+.++-++..++.........+.++.++.+|+.+...- .....+.+
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~i 90 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHV 90 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 67888888 456677777777654788999999988776666544433345677889998853210 00001467
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|.|+.+..
T Consensus 91 d~vi~~ag 98 (259)
T PRK08213 91 DILVNNAG 98 (259)
T ss_pred CEEEECCC
Confidence 88887654
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.51 E-value=5.2 Score=34.76 Aligned_cols=109 Identities=15% Similarity=0.067 Sum_probs=59.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCC----HHHHHHHHhccccCCCceEEEEecCCCCCCCC------CCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFS----ENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP------PFA 177 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s----~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~------~~~ 177 (352)
++++|=.|++ |.++..+++.+...+.+++.++.+ ....+...+.....+.++.++.+|+.+...-. ...
T Consensus 8 ~k~vlItGa~-~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 86 (257)
T PRK12744 8 GKVVLIAGGA-KNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA 86 (257)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence 5688888864 457777777665467776666542 22233222222222346788899987532100 001
Q ss_pred CCcceEEEehhhhh------ccChhHHH-----------HHHHHHHHhcCCCEEEEE
Q psy11741 178 PESLDIVLLIFVLD------AINPNKMQ-----------HVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 178 ~~~fD~V~~~~~l~------~~~~~~~~-----------~~l~~~~~~LkpgG~l~~ 217 (352)
.+..|+++.+.... ..+.+++. .+++.+.+.++++|.+++
T Consensus 87 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 87 FGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred hCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 24689888765432 22222222 345666667777776554
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.24 E-value=5.6 Score=34.46 Aligned_cols=81 Identities=15% Similarity=0.016 Sum_probs=52.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
+++||=.| |+|.++..+++.+...+.+|++++.++..++...........++.++.+|+.+...- .....+..
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 87 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTI 87 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 67888888 555667777776654788999999998877665554333334578888898753100 00011357
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+.+..
T Consensus 88 d~li~~ag 95 (258)
T PRK06949 88 DILVNNSG 95 (258)
T ss_pred CEEEECCC
Confidence 88887554
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.16 E-value=5.7 Score=33.88 Aligned_cols=79 Identities=19% Similarity=0.098 Sum_probs=50.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
+.+||=.| |+|.++..+++.+...+.+|++++.++.......+..... ..+.++.+|+.+...-.. + .-+.+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 56788888 4777778887766547889999998887665554433222 457788888875321000 0 01367
Q ss_pred eEEEehh
Q psy11741 182 DIVLLIF 188 (352)
Q Consensus 182 D~V~~~~ 188 (352)
|+|+...
T Consensus 84 d~vi~~a 90 (237)
T PRK07326 84 DVLIANA 90 (237)
T ss_pred CEEEECC
Confidence 8888654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 352 | ||||
| 4gek_A | 261 | Crystal Structure Of Wild-Type Cmoa From E.Coli Len | 4e-04 |
| >pdb|4GEK|A Chain A, Crystal Structure Of Wild-Type Cmoa From E.Coli Length = 261 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-28
Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 16/191 (8%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
K +L+ G G P + D YG + S+ + + + + D+
Sbjct: 25 KTVLDCGAGGD---LPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIR 81
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
PF ES+ V + + N ++ I+++ + LKPGG+ D
Sbjct: 82 ----KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKD---E 134
Query: 229 RFKKGRCLQDNFYA---RGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQI 285
R+ KG + + + RG+ + + + EE F+ + K++ + R +N G +I
Sbjct: 135 RYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVVER--INDGLKI 192
Query: 286 KM-YRVWIQAK 295
K Y +I K
Sbjct: 193 KQGYVDYIAEK 203
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 3e-20
Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 36/205 (17%)
Query: 67 KNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIV 126
++ Y K H+ +++ + K +L+IGC G +
Sbjct: 4 SPKNSLYE------EKSGHYYNAVNPNLLKHIKKEW------KEVLDIGCSSGA----LG 47
Query: 127 EHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186
K + V G + A KE + H + D+ + D P+ E D V+
Sbjct: 48 AAIKENGTRVSGIEAFPEAAEQAKEKLD------HVVLGDIETMDM--PYEEEQFDCVIF 99
Query: 187 IFVLDAI-NPNKMQHVINQVYKYLKPGGMVLF----RDYGRYDLVQLRFKKGRCLQDNFY 241
VL+ + +P VI +V Y+K G++L + L G Y
Sbjct: 100 GDVLEHLFDPWA---VIEKVKPYIKQNGVILASIPNVSHISVLAPLL---AGNWTY-TEY 152
Query: 242 ARGDGTLVYFFTREEVKTMFESAGF 266
D T + FFT E+ MF AG+
Sbjct: 153 GLLDKTHIRFFTFNEMLRMFLKAGY 177
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 8e-20
Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 23/214 (10%)
Query: 64 DVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVF 123
+ A +D+F ++ + +I+E + + +LE G G GN
Sbjct: 11 EWAHTYDSFVQGEDIQYKEVFAHY----EDILEDVVNKSFGN-----VLEFGVGTGNLTN 61
Query: 124 PIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183
++ + VYG + S I KE P D + P S+D
Sbjct: 62 KLLLAGRT----VYGIEPSREMRMIAKEKL---PKEFSITEGDFL----SFEV-PTSIDT 109
Query: 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYAR 243
++ + + ++ I + + L GG ++F D D Q F+
Sbjct: 110 IVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQL 169
Query: 244 GDGTLV-YFFTREEVKTMFESAGF-VEKQNLIDR 275
+ Y+ ++T+FE+ GF V L
Sbjct: 170 ANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHF 203
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 1e-17
Identities = 31/197 (15%), Positives = 68/197 (34%), Gaps = 31/197 (15%)
Query: 70 DAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHC 129
+Y + + +F R + I + +L+IGCG G +E C
Sbjct: 11 SDYYFLFEEKFRGSRELVKARLRRYIPYFKGCR-------RVLDIGCGRGE----FLELC 59
Query: 130 KNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189
K + + G D +E+ + + + + D ++ + LD V++
Sbjct: 60 KEEGIESIGVDINEDMIKFCEG-------KFNVVKSDA--IEYLKSLPDKYLDGVMISHF 110
Query: 190 LDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLV 249
++ ++P ++ +++ Y +K ++ + L D T
Sbjct: 111 VEHLDPERLFELLSLCYSKMKYSSYIV-----------IESPNPTSLYSLINFYIDPTHK 159
Query: 250 YFFTREEVKTMFESAGF 266
E +K + E GF
Sbjct: 160 KPVHPETLKFILEYLGF 176
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 1e-17
Identities = 37/225 (16%), Positives = 73/225 (32%), Gaps = 37/225 (16%)
Query: 61 LNEDVAKNWDA---FYNVHQNRFFKD--RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIG 115
+E K WD+ F+N + + R + F + ++ +L++G
Sbjct: 12 WHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKK----------EAEVLDVG 61
Query: 116 CGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP 175
CG G + + G D SE + KE E D++ + P
Sbjct: 62 CGDGYGTYKLSRTGYK----AVGVDISEVMIQKGKERGEG--PDLSFIKGDLS----SLP 111
Query: 176 FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRC 235
F E + ++ I L+ ++ +N++ + LK G G +
Sbjct: 112 FENEQFEAIMAINSLEWT-EEPLR-ALNEIKRVLKSDGYACIAILGPTAKPREN------ 163
Query: 236 LQDNFYARGDGTLVYFFTREEVKTMFESAGF--VEKQNLIDRRLQ 278
G + E + + + GF V+ + R +
Sbjct: 164 --SYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVN 206
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 4e-17
Identities = 30/224 (13%), Positives = 66/224 (29%), Gaps = 30/224 (13%)
Query: 54 DKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILE 113
+ I+ + V+ +D + +F + I + +IL+
Sbjct: 2 SLSEIKRKFDAVSGKYDE----QRRKFIPCFDDFYGVSVSIASVDTENP-------DILD 50
Query: 114 IGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN 173
+G G G ++E D SE + I K + D + D+
Sbjct: 51 LGAGTGLLSAFLMEKYPEATF--TLVDMSEKMLEIAKNRFR-GNLKVKYIEADYSKYDFE 107
Query: 174 PPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR---------YD 224
+ D+V+ + + + + + Y LK G+ + D
Sbjct: 108 EKY-----DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNK 162
Query: 225 LVQLRFKK--GRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266
+ ++ + G ++ L + + AGF
Sbjct: 163 TIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGF 206
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 4e-17
Identities = 43/257 (16%), Positives = 77/257 (29%), Gaps = 63/257 (24%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
E ++ ++ VH+ + + + E +EIG G G
Sbjct: 18 ERFVNEYERWFLVHRFAYLSELQAVKCLLPE---------------GRGVEIGVGTGRFA 62
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
P+ G + SE I ++ N P ES D
Sbjct: 63 VPLKI--------KIGVEPSERMAEIARKR------GVFVLKGTAE----NLPLKDESFD 104
Query: 183 IVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFY 241
L++ + + +P + + + Y+ LK GG ++ R + ++K +
Sbjct: 105 FALMVTTICFVDDPER---ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNK------E 155
Query: 242 ARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVHY 301
FF+ EE+ + AGF E + +Q
Sbjct: 156 KSVFYKNARFFSTEELMDLMRKAGFEEFK--------------------VVQTLFKHPSE 195
Query: 302 LFVTEEVKTMFESAGFV 318
L E VK + FV
Sbjct: 196 LSEIEPVKEGYGEGAFV 212
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 9e-17
Identities = 38/256 (14%), Positives = 91/256 (35%), Gaps = 38/256 (14%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
++ + + + +++ + L + ++ +L++ CGVG
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKK----------RGKVLDLACGVGGFS 53
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
F + ++ V G D SE+ + +E+ + + V D F ++ D
Sbjct: 54 FLLEDYGFE----VVGVDISEDMIRKAREYAKSRESNVEFIVGDAR----KLSFEDKTFD 105
Query: 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242
V+ I + P ++ V +V + LKP G + +L+ L+++
Sbjct: 106 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR-------LKESLVV 158
Query: 243 RGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVHYL 302
+ +E +T+ F +Q+ R + VW + + L
Sbjct: 159 GQKYWISKVIPDQEERTVV--IEFKSEQDSFRVR-----------FNVWGKTGVELLAKL 205
Query: 303 FVTEEVKTMFESAGFV 318
+ T+E + + ++
Sbjct: 206 YFTKEAEEKVGNYSYL 221
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 3e-16
Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 23/216 (10%)
Query: 55 KNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEI 114
+ ++ AKN D F + + E II T ++I
Sbjct: 3 SENKKKFDKKGAKNMDEISKTL----FAPIYPIIAE--NIINRFGITA------GTCIDI 50
Query: 115 GCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCDVTSEDW 172
G G G + + + DFS++ I ++ + DR DV
Sbjct: 51 GSGPGALSIALAKQSDFS---IRALDFSKHMNEIALKNIADANLNDRIQIVQGDVH---- 103
Query: 173 NPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK 232
N P D+++ + + ++Y+ LK GG ++
Sbjct: 104 NIPIEDNYADLIVSRGSVFFW-EDVAT-AFREIYRILKSGGKTYIGGGFGNKELRDSISA 161
Query: 233 GRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
++ + + + E + + + G
Sbjct: 162 EMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISS 197
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Length = 289 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 6e-15
Identities = 36/240 (15%), Positives = 75/240 (31%), Gaps = 59/240 (24%)
Query: 64 DVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVG-NSV 122
+ Y + + + + ++ + S + +++IG G +
Sbjct: 31 EPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEV---SGRTLIDIGSGPTVYQL 87
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNIL-----KEHEEYKPDRCHAFVC------------ 165
H ++ + DF E L +E + C
Sbjct: 88 LSACSHFED----ITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDK 143
Query: 166 --------------DVTSEDWNPPFAPESL--DIVLLIFVLDAINPNKM--QHVINQVYK 207
DV +P L D ++ F L+A++P+ Q ++ +
Sbjct: 144 ERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITT 203
Query: 208 YLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL-VYFFTREEVKTMFESAGF 266
L+PGG +L L++++Y G+ L V + EEV+ +G+
Sbjct: 204 LLRPGGHLLL---------------IGALEESWYLAGEARLTVVPVSEEEVREALVRSGY 248
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 9e-15
Identities = 32/221 (14%), Positives = 64/221 (28%), Gaps = 24/221 (10%)
Query: 58 IQTLNEDVAKNWDAF--YNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIG 115
+++L D K ++F + H + ++ + II + TK S IL IG
Sbjct: 5 MRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTK----SEIKILSIG 60
Query: 116 CGVGNSVFPIVE----HCKNDNVFVYGCDFSENAVNILKEHEEYKPD------RCHAFVC 165
G G I+ + + S + KE + H
Sbjct: 61 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS 120
Query: 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225
+ D + +I +L + + + + L +L
Sbjct: 121 SEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSG 178
Query: 226 VQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266
+KK L + T +++ M ++ G
Sbjct: 179 WDKLWKK------YGSRFPQDDLCQYITSDDLTQMLDNLGL 213
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 3e-14
Identities = 33/208 (15%), Positives = 59/208 (28%), Gaps = 30/208 (14%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
A +DA + + + +E L + ++LE+ G G
Sbjct: 16 RARASEYDATFVPYMDS----------AAPAALERLRAGNIR----GDVLELASGTGYWT 61
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ V D S + H D D+ DW P D
Sbjct: 62 RHLSGLADR----VTALDGSAEMIAEAGRH---GLDNVEFRQQDL--FDWTPD---RQWD 109
Query: 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242
V L + ++ + V + PGG+V F D ++ +
Sbjct: 110 AVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRT 169
Query: 243 RGDGT----LVYFFTREEVKTMFESAGF 266
DG + F + E+ + G+
Sbjct: 170 LQDGRSFRIVKVFRSPAELTERLTALGW 197
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 5e-14
Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 18/162 (11%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
N+LE+G G+ + + + SE A++ + +
Sbjct: 44 GNLLELGSFKGD----FTSRLQEHFNDITCVEASEEAISHAQGRLKDG--------ITYI 91
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL-V 226
+ P D ++L VL+ I +P + + +L GG + +
Sbjct: 92 HSRFEDAQLPRRYDNIVLTHVLEHIDDPVAL--LKRINDDWLAEGGRLFLVCPNANAVSR 149
Query: 227 QLRFKKGRCLQDNFYARGDGTL--VYFFTREEVKTMFESAGF 266
Q+ K G ++ + + + ++ AG
Sbjct: 150 QIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 2e-13
Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 10/160 (6%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTS 169
+LE GCG+G + ++ N + + D S ++ +E+ E+ ++
Sbjct: 41 VLEAGCGIGAQTVILAKN--NPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIF- 97
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL- 228
+ PF S D + + FVL+ + + + + + K LKPGG + +
Sbjct: 98 ---SLPFEDSSFDHIFVCFVLEHL-QSPEE-ALKSLKKVLKPGGTITVIEGDHGSCYFHP 152
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
KK + ++ + + +GF +
Sbjct: 153 EGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 5e-13
Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 8/162 (4%)
Query: 62 NEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNS 121
+ +VA W+ ++N W ++ L + +++ CG G
Sbjct: 12 DINVADAWEQYWNKTL-VNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQ 70
Query: 122 VFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESL 181
+ + V G D S++A+ I + + D + E
Sbjct: 71 TKFLSQFFPR----VIGLDVSKSALEIAAKENTAA--NISYRLLDGLVPEQAAQIHSEIG 124
Query: 182 D-IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222
D + + I K + + + L G + + G
Sbjct: 125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 5e-13
Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 27/197 (13%)
Query: 69 WDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEH 128
WD Y + D F+ F ++EP + IL +GCG + +
Sbjct: 10 WDQRYQGAADSAPYDWFGDFSSFRALLEPELRPE------DRILVLGCGNSALSYELFLG 63
Query: 129 CKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIF 188
+ V D+S V ++ + P + DV F S D+VL
Sbjct: 64 GFPN---VTSVDYSSVVVAAMQACYAHVP-QLRWETMDVR----KLDFPSASFDVVLEKG 115
Query: 189 VLDAINPN-------------KMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRC 235
LDA+ + V+++V + L PGG + + +
Sbjct: 116 TLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYY 175
Query: 236 LQDNFYARGDGTLVYFF 252
+A +
Sbjct: 176 GWSLRHATYGSGFHFHL 192
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 8e-13
Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 26/168 (15%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
IL++G G G + + G + + V + ++ +T
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQ----IEGLEPATRLVELARQ----THPSVTFHHGTIT-- 94
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF 230
+ +P+ +L + L + P ++ + + ++ GG +L F
Sbjct: 95 --DLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM-----------SF 141
Query: 231 KKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQ 278
G L+ Y + E+ E+AGF + D R
Sbjct: 142 FSGPSLE---PMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFP 186
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 1e-12
Identities = 37/206 (17%), Positives = 72/206 (34%), Gaps = 19/206 (9%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+L+IG G+G I E +G D N VN+ E ++ D+
Sbjct: 57 SKVLDIGSGLGGGCMYINEKY---GAHTHGIDICSNIVNMANERVS-GNNKIIFEANDIL 112
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
F + D++ + A++ + + YK+LKP G +L DY +
Sbjct: 113 ----TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENW 168
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMY 288
+ ++ Y T EE + + F D N+ + +
Sbjct: 169 DDEFKEYVKQRKY--------TLITVEEYADILTACNFKNVV-SKDLSDYWNQLLE-VEH 218
Query: 289 RVWIQAKSYFVHYLFVTEEVKTMFES 314
+ + K F+ LF ++ ++ +
Sbjct: 219 KYLHENKEEFLK-LFSEKKFISLDDG 243
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 1e-12
Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 21/160 (13%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCD 166
I +IGCG G + H V G DF ++I + +R V
Sbjct: 48 SLIADIGCGTGGQTMVLAGHV---TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGS 104
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV 226
+ + PF E LD++ + I + +N+ KYLK GG + + +
Sbjct: 105 MD----DLPFRNEELDLIWSEGAIYNIGFERG---LNEWRKYLKKGGYLAVSECSWFT-- 155
Query: 227 QLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266
R + + Y T AG+
Sbjct: 156 DERPAEINDFWMDAYPE-------IDTIPNQVAKIHKAGY 188
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 1e-12
Identities = 35/218 (16%), Positives = 71/218 (32%), Gaps = 45/218 (20%)
Query: 53 IDKNLIQTLNEDVAKNWDAFYNVHQNRFFK--DRHWLFTEFTEIIEPLSSTKTDTCSTKN 110
++ ++ Q ++D FY + + + R T+F + +
Sbjct: 1 MEPDMTQAFDDDTL----RFYRGNATAYAERQPRSATLTKFLGELPAGAK---------- 46
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
ILE+GCG G ++ V D S V +
Sbjct: 47 ILELGCGAGYQAEAMLAA----GFDVDATDGSPELAAEASRR----------LGRPVRTM 92
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF 230
++ A ++ D V L + +++ V+ +++ LKPGG+ +
Sbjct: 93 LFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA-----------SY 141
Query: 231 KKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
K G + AR + + E ++ + AG
Sbjct: 142 KSGEGEGRDKLAR----YYNYPSEEWLRARYAEAGTWA 175
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 1e-12
Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 21/160 (13%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCDVT 168
I +IGCG G + ++ + G D + + I E+ + DR +
Sbjct: 50 IADIGCGTGGQTLFLADYV---KGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD 106
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
N PF E LD++ + I + +N+ KYLK GG + + +
Sbjct: 107 ----NLPFQNEELDLIWSEGAIYNIGF---ERGMNEWSKYLKKGGFIAVSEASWFT---- 155
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
E AG+
Sbjct: 156 -----SERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTP 190
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 1e-12
Identities = 22/170 (12%), Positives = 50/170 (29%), Gaps = 18/170 (10%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCDVT 168
+ + CG + + + ++ V + G D+ A++ + D
Sbjct: 122 VASVPCGWMSELLAL-DYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDA- 179
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQ 227
W E D++ + + ++ + + ++ LKPGG ++ +
Sbjct: 180 ---WKLDT-REGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALS 235
Query: 228 LRFKKGRCLQDN---------FYARGDGTLVYFFTREEVKTMFESAGFVE 268
D F T + + E AGF +
Sbjct: 236 PDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTD 285
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 2e-12
Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 22/186 (11%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCDVT 168
+L++GCG+G + +V V G S VN +R D
Sbjct: 65 VLDVGCGIGKPAVRLATAR---DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAM 121
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
+ PF S D V + L + P++ + ++ + L+PGG V D+ V+
Sbjct: 122 ----DLPFEDASFDAVWALESLHHM-PDR-GRALREMARVLRPGGTVAIADFVLLAPVEG 175
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMY 288
K+ + + G G ++ +E ++ A V +D Q
Sbjct: 176 AKKEAV----DAFRAGGG-VLSLGGIDEYESDVRQAELVVTS-TVDISAQARP-----SL 224
Query: 289 RVWIQA 294
+A
Sbjct: 225 VKTAEA 230
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-12
Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 24/133 (18%)
Query: 93 EIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH 152
E + + K I++ GCG G ++E +Y D + A+ +KE
Sbjct: 8 EYLPNIFEGKKGV-----IVDYGCGNGFYCKYLLEFATK----LYCIDINVIALKEVKE- 57
Query: 153 EEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL-DAINPNKMQHVINQVYKYLKP 211
+ + + S+D +L D + + I++V + LK
Sbjct: 58 ------KFDSVITLSD----PKEIPDNSVDFILFANSFHDMDDKQHV---ISEVKRILKD 104
Query: 212 GGMVLFRDYGRYD 224
G V+ D+ + +
Sbjct: 105 DGRVIIIDWRKEN 117
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-12
Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 25/158 (15%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTS 169
+L++G G G + + + + VY D E VN E + +
Sbjct: 41 VLDVGTGAGFYLPYLSKMVG-EKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN- 98
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
P ++D + + F + ++ + ++ + KP + D+ + +
Sbjct: 99 ---KIPLPDNTVDFIFMAFTFHEL-SEPLK-FLEELKRVAKPFAYLAIIDWKKEER---- 149
Query: 230 FKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267
KG ++ ++ EV + E AG
Sbjct: 150 -DKGPPPEE------------VYSEWEVGLILEDAGIR 174
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 3e-12
Identities = 31/200 (15%), Positives = 64/200 (32%), Gaps = 21/200 (10%)
Query: 72 FYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKN 131
++ H H ++ ++++ + + +L++ G G+ K
Sbjct: 7 HHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEE-----VLDVATGGGHVANAFAPFVKK 61
Query: 132 DNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL 190
V D +E+ + + + E + D PF E IV
Sbjct: 62 ----VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE----QMPFTDERFHIVTCRIAA 113
Query: 191 DAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVY 250
PN +++ Y+ LK GG +L D + + D +
Sbjct: 114 HHF-PNPAS-FVSEAYRVLKKGGQLLLVDNSAPENDAFDV-----FYNYVEKERDYSHHR 166
Query: 251 FFTREEVKTMFESAGFVEKQ 270
+ + + M E AGF ++
Sbjct: 167 AWKKSDWLKMLEEAGFELEE 186
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 4e-12
Identities = 27/208 (12%), Positives = 54/208 (25%), Gaps = 33/208 (15%)
Query: 65 VAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFP 124
A +D H + T + P LE+G G G P
Sbjct: 8 AAYAYDR-LRAHPPEVA---GQIATAMASAVHPKGEEPV-------FLELGVGTGRIALP 56
Query: 125 IVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184
++ D + + ++ + D P ES+ V
Sbjct: 57 LIARGYR----YIALDADAAMLEVFRQKIAGVDRKVQVVQADAR----AIPLPDESVHGV 108
Query: 185 LLIFVLDAINPNKMQHV------INQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQD 238
+++ + V + + + LKPGG +L + ++
Sbjct: 109 IVVHLW--------HLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFA 160
Query: 239 NFYARGDGTLVYFFTREEVKTMFESAGF 266
++ +EV+ G
Sbjct: 161 AEEGFPVERGLHAKRLKEVEEALRRLGL 188
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 4e-12
Identities = 26/188 (13%), Positives = 55/188 (29%), Gaps = 29/188 (15%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVT 168
L++G G G + +V V + + + +E+ D
Sbjct: 86 GLDLGAGYGGAARFLVRKF---GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL 142
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAIN--PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV 226
P S D + + DA P+K V + + LKP G++ D + D +
Sbjct: 143 ----EIPCEDNSYDFI---WSQDAFLHSPDK-LKVFQECARVLKPRGVMAITDPMKEDGI 194
Query: 227 QLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIK 286
+ + + + +++ + G V + R + +
Sbjct: 195 DKSSIQPILDRIKLH--------DMGSLGLYRSLAKECGLVTLR-TFSRPDSL-----VH 240
Query: 287 MYRVWIQA 294
Y
Sbjct: 241 HYSKVKAE 248
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 1e-11
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 11/115 (9%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
N LEIGC G + HCK + D A+ + + H
Sbjct: 53 SNGLEIGCAAGAFTEKLAPHCKR----LTVIDVMPRAIGRACQRTKRWS---HISWAATD 105
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGR 222
++ E D++++ VL + + +M+ I+ + K L PGG ++F
Sbjct: 106 ILQFST---AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 1e-11
Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 16/159 (10%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTS 169
+L+IG G G++ + + G D ++ V + +E +
Sbjct: 25 VLDIGAGAGHTALAFSPYVQE----CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE- 79
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
+ PF +S DI+ + + + + +V + LK G L D+ + L
Sbjct: 80 ---SLPFPDDSFDIITCRYAAHHF-SDVRK-AVREVARVLKQDGRFLLVDHYAPEDPVLD 134
Query: 230 FKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
++ D + V + E + MF +
Sbjct: 135 E-----FVNHLNRLRDPSHVRESSLSEWQAMFSANQLAY 168
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-11
Identities = 34/222 (15%), Positives = 62/222 (27%), Gaps = 38/222 (17%)
Query: 62 NEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNS 121
++ + + +++ + E +++ + K +L++GCG G
Sbjct: 10 DKHFFEQYSQMP---RSKEGLKAAGEWHELKKMLPDFNQ--------KTVLDLGCGFGWH 58
Query: 122 VFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESL 181
EH V G D SE + K + + P++
Sbjct: 59 CIYAAEHGAKK---VLGIDLSERMLTEAKRKTTS--PVVCYEQKAIE----DIAIEPDAY 109
Query: 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR--------FKKG 233
++VL L I + +VY LK G +F R K
Sbjct: 110 NVVLSSLALHYIA--SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKL 167
Query: 234 RCLQDNFYAR--------GDGTLVYFFTREEVKTMFESAGFV 267
D ++ G+ Y T GF
Sbjct: 168 HWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQ 209
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 1e-11
Identities = 28/207 (13%), Positives = 63/207 (30%), Gaps = 24/207 (11%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
A+ W R I+ + + + +L++GCG G +
Sbjct: 18 HQNAQAWIDAV-----RHGAIESRRQVTDQAILLAILGRQP-----ERVLDLGCGEGWLL 67
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ + + G D V+ + + A + + D
Sbjct: 68 RALADRG----IEAVGVDGDRTLVDAARAA--GAGEVHLASYAQLAEAK---VPVGKDYD 118
Query: 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242
++ F L + + +++ + L PGG ++ + + + ++ G +
Sbjct: 119 LICANFALLHQDIIE---LLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGF 175
Query: 243 RGDGTLV--YFFTREEVKTMFESAGFV 267
GD + YF T + AG
Sbjct: 176 AGDWQPMPWYFRTLASWLNALDMAGLR 202
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 3e-11
Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 43/192 (22%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFV 164
+LE+ G+G FP ++ V + S + + ++ P DRC
Sbjct: 84 GPVLELAAGMGRLTFPFLDLGWE----VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQ 139
Query: 165 CDVTSEDWNPPFAPESLDIVLLIF-VLDAINPNKMQHVINQVYKYLKPGGMVLF------ 217
D+++ + F V++ ++ ++ + + V ++L+PGG L
Sbjct: 140 GDMSAFALDKRF-----GTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194
Query: 218 ---------------RDYGRYDLVQLRFKKGRCLQDNFYARGDGT--------LVYFFTR 254
R RY L + + + T
Sbjct: 195 AAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAP 254
Query: 255 EEVKTMFESAGF 266
++V +GF
Sbjct: 255 DQVVRELVRSGF 266
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 3e-11
Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 27/166 (16%)
Query: 64 DVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVF 123
D A+ A ++ I+ L D +L+IGCG G
Sbjct: 50 DSAEMMQARRAFLDAGHYQPLRD------AIVAQLRERLDDKA--TAVLDIGCGEGYYTH 101
Query: 124 PIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183
+ + +G D S+ A+ + + V PF+ S+D
Sbjct: 102 AFADAL--PEITTFGLDVSKVAIKAAAKR----YPQVTFCVASS----HRLPFSDTSMDA 151
Query: 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
++ I+ ++ + +KPGG V+ G L++L+
Sbjct: 152 IIRIYAP---------CKAEELARVVKPGGWVITATPGPRHLMELK 188
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 4e-11
Identities = 33/178 (18%), Positives = 69/178 (38%), Gaps = 30/178 (16%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH------EEYKPDRCHA 162
IL+IGCG G + + V G D + A+ + + + +
Sbjct: 32 DEILDIGCGSGKISLELASKGYS----VTGIDINSEAIRLAETAARSPGLNQKTGGKAEF 87
Query: 163 FVCDVTSEDWNPPFAPESLDIVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYG 221
V + + + F S D ++ L ++ +P + +I +V++ LKPG + ++G
Sbjct: 88 KVENAS----SLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG 143
Query: 222 RYDLVQLRFKKGRCLQDNFYARGDGTLV-------------YFFTREEVKTMFESAGF 266
+ L+ + R L D + +G+ + + FT +E+ + F
Sbjct: 144 Q--NWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRF 199
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 4e-11
Identities = 36/259 (13%), Positives = 84/259 (32%), Gaps = 49/259 (18%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
A +D + + W +F ++ + L++ CG GN
Sbjct: 4 NKFAHIYDKLIRADVDY----KKWS--DFIIEKCVENNLVF-----DDYLDLACGTGNLT 52
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ KN + D S+ ++ + + + D+++ + N F D
Sbjct: 53 ENLCPKFKN----TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKF-----D 103
Query: 183 IVLLIFVLDAIN----PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQD 238
++ D+ N + ++ V +LK GG+ +F D+ +K + L +
Sbjct: 104 LITCCL--DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF------DIN-SYYKLSQVLGN 154
Query: 239 NFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSYF 298
N + D + Y++ + F + + V G+ K +
Sbjct: 155 NDFNYDDDEVFYYWENQ----------FEDDLVSMYISFFVRDGEFYKRFDEE------H 198
Query: 299 VHYLFVTEEVKTMFESAGF 317
+ E+++ +
Sbjct: 199 EERAYKEEDIEKYLKHGQL 217
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 4e-11
Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 36/213 (16%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
K I +IGCG G + + +H + V G D SE + I +E +V D+
Sbjct: 35 KRIADIGCGTGTATLLLADHYE-----VTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMR 89
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAIN----PNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224
+ P D + ++ D++N ++ + + L GG +LF D
Sbjct: 90 ELELPEPV-----DAITILC--DSLNYLQTEADVKQTFDSAARLLTDGGKLLF------D 136
Query: 225 LVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQ 284
+ Y E+ ++ + E+ + L +
Sbjct: 137 VHSP----------YKMETLFNGKTYATHAEQSSYIWFA-DPGEEPLSVVHELTFFIEGE 185
Query: 285 IKMYRVWIQAKSYFVHYLFVTEEVKTMFESAGF 317
Y + + E+ T AGF
Sbjct: 186 DGRYDRVDE---THHQRTYPPEQYITWLREAGF 215
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 6e-11
Identities = 41/229 (17%), Positives = 82/229 (35%), Gaps = 39/229 (17%)
Query: 69 WDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVG-NSVFPIVE 127
D +F D++ L +E++E + K L++GCG G NS++ +
Sbjct: 6 RDE-------NYFTDKYELTRTHSEVLEAVKVVKP-----GKTLDLGCGNGRNSLY-LAA 52
Query: 128 HCKNDNVFVYGCDFSENAVNILKE-HEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186
+ + V D + ++ ++ D H V D+ + ++ + D +L
Sbjct: 53 NGYD----VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY-----DFILS 103
Query: 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDG 246
VL + + +I + + KPGG L D G + G+
Sbjct: 104 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA--MDTADYPCTVGF---PFAFKEGE- 157
Query: 247 TLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAK 295
L ++ E E G + + + G +IK+ + A+
Sbjct: 158 -LRRYYEGWERVKYNEDVGELHRTDA--------NGNRIKLRFATMLAR 197
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 9e-11
Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 18/164 (10%)
Query: 58 IQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCG 117
++ L++D+ + K + S +L++GCG
Sbjct: 78 VEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCK-------VLDLGCG 130
Query: 118 VG-NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF 176
G NS++ + V D +EN++ L E +E + + D+ + + +
Sbjct: 131 QGRNSLY-LSLL----GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185
Query: 177 APESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220
D ++ V +N ++ +I + ++ GG L
Sbjct: 186 -----DFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 1e-10
Identities = 40/257 (15%), Positives = 86/257 (33%), Gaps = 41/257 (15%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
+A+ +D Y R + ++ F E + + +L++ CG G
Sbjct: 6 TLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKR---------EVRRVLDLACGTGIPT 56
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ E V G D E + + + + + + DV + F D
Sbjct: 57 LELAERGYE----VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF-----D 107
Query: 183 IVLLIF-VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFY 241
V + F + + ++ + ++V + LKPGG+ + D+ + Y
Sbjct: 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT-DFPCWF----------------Y 150
Query: 242 ARGDGTLVYFFTREEVKTMFESAGFVE-KQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVH 300
DG +V+ + E K + VE + + V + + ++
Sbjct: 151 GGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKAFLV---DDEL 207
Query: 301 YLFVTEEVKTMFESAGF 317
++ EV+ + F
Sbjct: 208 NIYTPREVR-LLAEKYF 223
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 1e-10
Identities = 32/170 (18%), Positives = 70/170 (41%), Gaps = 23/170 (13%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC---------- 160
+L++GCG G V+ + ++ V G D +N + + +++ EY ++
Sbjct: 87 VLDLGCGTGRDVYLASKLVG-EHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVR 145
Query: 161 --HAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218
F+ ++ + + S+DIV+ V + NK+ + ++++ L+ GG + F
Sbjct: 146 FLKGFIENLATAE-PEGVPDSSVDIVISNCVCNLS-TNKLA-LFKEIHRVLRDGGELYFS 202
Query: 219 DYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
D + ++ L Y L E+ + + AGF +
Sbjct: 203 DVYADRRLSEAAQQDPIL----YG---ECLGGALYLEDFRRLVAEAGFRD 245
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 17/176 (9%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
IL++GCG G I + V G D + + ++ H V D
Sbjct: 61 ILDLGCGTGQLTEKIAQSGAE----VLGTDNAATMIEKARQ----NYPHLHFDVADA--R 110
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF 230
++ + LD V +L + + I +++ LK GG + G+ ++ +
Sbjct: 111 NFRV---DKPLDAVFSNAML--HWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILE 165
Query: 231 KKGRCLQDNFYARGDGTLVYFF-TREEVKTMFESAGF-VEKQNLIDRRLQVNRGKQ 284
L+ ++F + E + E GF V L +R + G+
Sbjct: 166 ALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALFNRPTTLAEGEF 221
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 2e-10
Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCDVT 168
L GCG G+ V + + V G D SE+A+ E K + DV
Sbjct: 70 ALVPGCGGGHDVVAMASPERF----VVGLDISESALAKANETYGSSPKAEYFSFVKEDVF 125
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220
+ F D++ AI P +Y+ LKP G ++ Y
Sbjct: 126 TWRPTELF-----DLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY 172
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 4e-10
Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 38/202 (18%)
Query: 69 WDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVG-NSVFPIVE 127
WD ++ + + + + I IL + G G N+ F
Sbjct: 2 WDERFSQSEYVYGTEPNDFLVSVANQIPQ-----------GKILCLAEGEGRNACFLASL 50
Query: 128 HCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187
+ V D S + K+ + K + ++ D+ ++ + ++ I
Sbjct: 51 GYE-----VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL--ADF--DIVADAWEGIVSI 101
Query: 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGT 247
F + + Q + +VY+ LKPGG+ + + L Y G
Sbjct: 102 FC--HLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQL--------------QYNTGGPK 145
Query: 248 LV-YFFTREEVKTMFESAGFVE 268
+ E +++ S ++
Sbjct: 146 DLDLLPKLETLQSELPSLNWLI 167
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 58.4 bits (140), Expect = 4e-10
Identities = 33/218 (15%), Positives = 75/218 (34%), Gaps = 28/218 (12%)
Query: 62 NEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNS 121
+E+VA+ + + + E + N+ ++GC G +
Sbjct: 23 DENVAEVFPDMIQ-RSVPGYSNIITAIGMLAERFVT---------ADSNVYDLGCSRGAA 72
Query: 122 VFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTSEDWNPPFAPES 180
+ NV + G D S+ V ++H Y + +C+
Sbjct: 73 TLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNA---- 128
Query: 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQD-- 238
+V+L F L + P ++ ++Y+ L P G+++ + R++ ++
Sbjct: 129 -SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFK 187
Query: 239 --NFYARGD--------GTLVYFFTREEVKTMFESAGF 266
N Y+ + ++ + E K ++ GF
Sbjct: 188 RANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGF 225
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 5e-10
Identities = 22/186 (11%), Positives = 52/186 (27%), Gaps = 29/186 (15%)
Query: 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC 165
T L+ G G+G ++ + ++ + K P +
Sbjct: 92 HGTSRALDCGAGIGRITKNLLTKLYAT---TDLLEPVKHMLEEAKRELAGMP-VGKFILA 147
Query: 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225
+ P + D++++ + + + L P G + F++
Sbjct: 148 SME----TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG- 202
Query: 226 VQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQ- 284
D F + + + + K +F +G ++ Q
Sbjct: 203 ------------DRFLVDKEDSSLT-RSDIHYKRLFNESGV----RVVKEAFQEEWPTDL 245
Query: 285 --IKMY 288
+KMY
Sbjct: 246 FPLKMY 251
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 5e-10
Identities = 32/204 (15%), Positives = 68/204 (33%), Gaps = 33/204 (16%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
+A+ ++A+Y + ++ P S +LE+G G G +
Sbjct: 4 ASLAEAYEAWYGTPLGAY--VIAEEERALKGLLPPGES----------LLEVGAGTGYWL 51
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ G + SE + + + + PF ES D
Sbjct: 52 RRLPYPQ------KVGVEPSEAMLAVGRR----RAPEATWVRAWGE----ALPFPGESFD 97
Query: 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242
+VLL L+ + + + V+ + + L+PGG ++ +++ +A
Sbjct: 98 VVLLFTTLEFV-EDVER-VLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWA 155
Query: 243 RGDGTLVYFFTREEVKTMFESAGF 266
+ F RE++K +
Sbjct: 156 QA-----RFLAREDLKALLGPPEA 174
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 7e-10
Identities = 29/197 (14%), Positives = 70/197 (35%), Gaps = 28/197 (14%)
Query: 95 IEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE 154
++ + T L+ G G+G ++ + V D +E+ + K +
Sbjct: 67 LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFRE---VDMVDITEDFLVQAKTYLG 123
Query: 155 YKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGM 214
+ R + C +D+ P+S D++ + +V+ + + + + L+P G+
Sbjct: 124 EEGKRVRNYFC-CGLQDF--TPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGI 180
Query: 215 VLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLID 274
++ +D Q+ + V + V+ + SAG +L+
Sbjct: 181 IVIKD--------------NMAQEGVILDDVDSSVC-RDLDVVRRIICSAGL----SLLA 221
Query: 275 RRLQVNRGKQ---IKMY 288
Q N + + +
Sbjct: 222 EERQENLPDEIYHVYSF 238
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 7e-10
Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 26/174 (14%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
I+++GCG G EH + +V G D SE + + D+
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGAS---YVLGLDLSEKMLARARAA--GPDTGITYERADLD 99
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD-------YG 221
+S D+ L + + + V++ L PGG +F
Sbjct: 100 K----LHLPQDSFDLAYSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPA 153
Query: 222 RYDLVQLRFKKGRCLQDNFYARG--------DGTLVYFFTREEVKTMFESAGFV 267
R + D + G G + + T +GF
Sbjct: 154 RPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFA 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 8e-10
Identities = 59/427 (13%), Positives = 123/427 (28%), Gaps = 119/427 (27%)
Query: 3 ETGEVRPQFGNR----VLQED--------------SNVFQHNAWDHVQWDEEQEQQARKL 44
ETGE Q+ + V ++ ++ DH+ ++ +L
Sbjct: 10 ETGEH--QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 45 VENNSVLQIDKNLIQTLNEDV-AKN----WDAF-------------YNVHQNRFFKDRHW 86
++L + ++Q E+V N Y ++R + D
Sbjct: 68 FW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ- 124
Query: 87 LFT--------EFTEIIEPLSSTKTDTCSTKNILEIG-CGVGNSVFPI-------VEHCK 130
+F + ++ + L + KN+L G G G + + V+
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELR----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 131 NDNVF---VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE---DWNPPFAPESLDIV 184
+ +F + C+ E + +L+ + + TS N S+
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQ-------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 185 LLIFVLDAINPNK---MQHVIN-QVYKYLKPGGMVLF--RDYGRYDLVQLRFKKGRCLQD 238
L + N + +V N + + +L R D + L
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 239 NFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRG-----KQI-KMYRVWI 292
+ T +EVK++ Q+L +V I + R +
Sbjct: 294 HSMT---------LTPDEVKSLLLKYLDCRPQDL---PREVLTTNPRRLSIIAESIRDGL 341
Query: 293 QAKSYFVHYLFVTEEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYR--------VWIQ 344
+ H +++ T+ ES + + R KM+ I
Sbjct: 342 ATWDNWKHVNC--DKLTTIIES--SLNVLEPAEYR---------KMFDRLSVFPPSAHIP 388
Query: 345 AKYMKPL 351
+ +
Sbjct: 389 TILLSLI 395
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 9e-10
Identities = 38/269 (14%), Positives = 86/269 (31%), Gaps = 39/269 (14%)
Query: 59 QTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGV 118
Q + + A+ W + ++R + + WL ++ +L++ CG
Sbjct: 21 QYADGEAARVWQLYIGDTRSRTAEYKAWL----LGLLRQHG--------CHRVLDVACGT 68
Query: 119 GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP---- 174
G +VE + V D S+ + + + + +W
Sbjct: 69 GVDSIMLVEEGFS----VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD 124
Query: 175 PFAPESLDIVLLIF------VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
A + D V+ + + ++ + + + ++PGG+++ D+ YD +
Sbjct: 125 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI-DHRNYDYILS 183
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMY 288
N Y + D T +++ T + +D +QV +
Sbjct: 184 TGCAPP--GKNIYYKSDLT-------KDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAP 234
Query: 289 RVWIQAKSYFVHYLFVTEEVKTMFESAGF 317
SY+ H L + + A
Sbjct: 235 GFSKFRLSYYPHCL---ASFTELVQEAFG 260
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 1e-09
Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 21/170 (12%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
+LE GCG G DFS + + + + + E
Sbjct: 52 VLEAGCGHGPDAARFGPQAAR----WAAYDFSPELLKLARA----NAPHADVYEWNGKGE 103
Query: 171 DWNPPFAPESL-DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
P + +++ + VI ++ + P L+ R ++ ++
Sbjct: 104 ---LPAGLGAPFGLIVSRRGPTS--------VILRLPELAAPDAHFLYVG-PRLNVPEVP 151
Query: 230 FKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQV 279
+ D L + T E+ + E G + ++ D V
Sbjct: 152 ERLAAVGWDIVAEDHVSVLAHAPTWEDWQMRGEFMGKLARRADWDAEATV 201
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 1e-09
Identities = 28/181 (15%), Positives = 52/181 (28%), Gaps = 24/181 (13%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN------AVNILKEHEEYKPDRCHA-F 163
ILEIGCG G+ + + + V G D + + H P
Sbjct: 47 ILEIGCGQGDLSAVLADQV-GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTV 105
Query: 164 VCDVTSEDWNPPFAPESLDIVLLIFVL----DAINPNKMQHVINQVYKYLKPGGMVLFRD 219
+ D P A + D V+L L A + + V +
Sbjct: 106 HFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNM------AAVCDHVDVAE 159
Query: 220 YGR--YDLVQLRFKKGRCLQDNFYARGDGTLVY---FFTREEVKTMFESAGF-VEKQNLI 273
+ L Q+ + +Q YA + T + + + + ++
Sbjct: 160 WSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219
Query: 274 D 274
+
Sbjct: 220 E 220
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 1e-09
Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 60/239 (25%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
++A+ +D + KD H + ++ S ++L++ CG G +
Sbjct: 16 GEIAELYDLVHQ----GKGKDYHREAADLAALVRRHSPKA------ASLLDVACGTGMHL 65
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ + V G + S + + I + D+ F
Sbjct: 66 RHLADSFGT----VEGLELSADMLAIARRRNP----DAVLHHGDMRDFSLGRRF-----S 112
Query: 183 IVLLIFVLDAIN----PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQD 238
V +F +I ++ + + ++ P G+V+ + + + ++
Sbjct: 113 AVTCMF--SSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEA 170
Query: 239 N-----------------------FYARGDGTLVYF--------FTREEVKTMFESAGF 266
A D + + FTRE+ + F +AG
Sbjct: 171 GGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGL 229
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 3e-09
Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 41/214 (19%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
++L++ CG G + + + G + SE+ + ++ + D+
Sbjct: 42 SSLLDVACGTGTHLEHFTKEFGD----TAGLELSEDMLTHARK----RLPDATLHQGDMR 93
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAIN----PNKMQHVINQVYKYLKPGGMVLFRDYGRYD 224
F V+ +F ++ ++ + ++L+PGG+V+ +
Sbjct: 94 DFRLGRKF-----SAVVSMF--SSVGYLKTTEELGAAVASFAEHLEPGGVVVV------E 140
Query: 225 LVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQV-NRGK 283
R DG V + + ++ V + GK
Sbjct: 141 PWWFPETFADGWVSADVVRRDGRTVARVSHSVRE---------GNATRMEVHFTVADPGK 191
Query: 284 QIKMYRVWIQAKSYFVHYLFVTEEVKTMFESAGF 317
++ + + LF E + F +AG
Sbjct: 192 GVRHFS------DVHLITLFHQAEYEAAFTAAGL 219
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 3e-09
Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 17/166 (10%)
Query: 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169
+I++ GCG G ++ + G D E + +E P D T
Sbjct: 25 HIVDYGCGYGYLGLVLMPLL-PEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT- 82
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
+ DI + L ++ + ++ ++ +K GG ++ + +
Sbjct: 83 ---EIEL-NDKYDIAICHAFL--LHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASY 136
Query: 230 FKKGRCLQDNFYARGDGTLVYFFTR---------EEVKTMFESAGF 266
G + L T+ ++ G
Sbjct: 137 LLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGV 182
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 4e-09
Identities = 23/157 (14%), Positives = 49/157 (31%), Gaps = 20/157 (12%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
IL+ GCG G + + + V G D ++ K+ V D++
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHD----VLGTDLDPILIDYAKQ----DFPEARWVVGDLS-- 99
Query: 171 DWNPPFAPESLDIVLLIF-VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
+ D+++ V+ + + + + +++ L G + V
Sbjct: 100 --VDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGD 157
Query: 230 FKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266
F R L F ++K + + F
Sbjct: 158 F-------LEVAERVGLELENAFESWDLKPFVQGSEF 187
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 5e-09
Identities = 34/218 (15%), Positives = 60/218 (27%), Gaps = 43/218 (19%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
+ K + D + II L+ K I +IG G G
Sbjct: 6 NSIGKQYSQT-------RVPDIRIV----NAIINLLNLPKGSV-----IADIGAGTGGYS 49
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ +FVY + S H + F N +S+D
Sbjct: 50 VALANQ----GLFVYAVEPSIVMRQQAVVH-----PQVEWFTGYAE----NLALPDKSVD 96
Query: 183 IVLLIFVLDAINPNKMQHV------INQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCL 236
V+ I + H ++ + ++ G +VL R + L
Sbjct: 97 GVISILAI--------HHFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFL 148
Query: 237 QDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLID 274
++ +E K E+ F+ +L D
Sbjct: 149 WEDALRFLPLDEQINLLQENTKRRVEAIPFLLPHDLSD 186
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Length = 263 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 1e-08
Identities = 32/235 (13%), Positives = 65/235 (27%), Gaps = 62/235 (26%)
Query: 69 WDAFYNVHQNRFFKDR--HWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCG-VGNSVFPI 125
+Y+ + + + + P + DT +++IG G V
Sbjct: 21 LATYYSFDGSPSPEAEMLKFNLECLHKTFGP-GGLQGDT-----LIDIGSGPTIYQVLAA 74
Query: 126 VEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC------------------------- 160
+ ++ + DF++ L++ + +P
Sbjct: 75 CDSFQD----ITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130
Query: 161 ------HAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKM--QHVINQVYKYLKPG 212
CDV + P D VL + ++ + + + + LKPG
Sbjct: 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG 190
Query: 213 GMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL-VYFFTREEVKTMFESAGF 266
G ++ L+ Y G + EV+ AGF
Sbjct: 191 GHLVT---------------TVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGF 230
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* Length = 265 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-08
Identities = 36/248 (14%), Positives = 75/248 (30%), Gaps = 63/248 (25%)
Query: 69 WDAFYNVHQNRFFKD--RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVG-NSVFPI 125
+ +Y+ ++ L +I + + +++IG G +
Sbjct: 22 LEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKG------ELLIDIGSGPTIYQLLSA 75
Query: 126 VEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC------------------------- 160
E + D+++ + L++ + +P
Sbjct: 76 CESFTE----IIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131
Query: 161 ------HAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKM--QHVINQVYKYLKPG 212
CDVT + D +L LDA P+ + + + LKPG
Sbjct: 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPG 191
Query: 213 GMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL-VYFFTREEVKTMFESAGF-VEKQ 270
G ++ D L+ ++Y G+ E V+ E AG+ +E+
Sbjct: 192 GFLVMVD---------------ALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQF 236
Query: 271 NLIDRRLQ 278
+I +
Sbjct: 237 EVISQNYS 244
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 3e-08
Identities = 18/110 (16%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCD 166
K ++++GCG GN + +++ + + G D S + + K+ + P+ +
Sbjct: 31 KKVIDLGCGEGNLLSLLLKDKSFEQI--TGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
S D +I V++ ++ N++Q ++++ +P +++
Sbjct: 89 FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-07
Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 31/196 (15%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+L++G G G + E V D S+ + + +E +
Sbjct: 56 CRVLDLGGGTGKWSLFLQERGFE----VVLVDPSKEMLEVAREK-----GVKNVVEAKAE 106
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAIN--PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV 226
+ PF + + VL + D ++ NK + +++ + L P G+++ Y +
Sbjct: 107 ----DLPFPSGAFEAVLALG--DVLSYVENKDK-AFSEIRRVLVPDGLLIATVDNFYTFL 159
Query: 227 QLRFKKG------RCLQDNFYARGDGTLV---YFFTREEVKTM--FESAGF--VEKQNLI 273
Q +K R L+ + G Y F E++ ++ FE+ +
Sbjct: 160 QQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVDIRGIGVMEYP 219
Query: 274 DRRLQVNRGKQIKMYR 289
D R+ ++ +
Sbjct: 220 DERISEREETIFRLEQ 235
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 2e-07
Identities = 16/111 (14%), Positives = 43/111 (38%), Gaps = 4/111 (3%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+++ GCG G+ + ++++ + + G D S + + K ++ V T
Sbjct: 723 STLVDFGCGSGSLLDSLLDYPTSLQ-TIIGVDISPKGLARAAKMLHVKLNKEACNVKSAT 781
Query: 169 SEDWN---PPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
D + +DI + V++ + ++ +V P +++
Sbjct: 782 LYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 5e-07
Identities = 39/249 (15%), Positives = 79/249 (31%), Gaps = 48/249 (19%)
Query: 62 NEDVAKNWDAFYNVHQNRFFKDRHWLFTEF---------TEIIEPLSSTKTDTCSTKNIL 112
E + YN + R + R T +I + ++L
Sbjct: 16 MEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRG------DSVL 69
Query: 113 EIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTSED 171
++GCG G ++++ + YG D +E ++N + K F +
Sbjct: 70 DLGCGKG---GDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR 126
Query: 172 WNPPFAPESLDIVLLIFVLDAI--NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
+ D++ F + + ++L+PGG + R +++ R
Sbjct: 127 HMDLG--KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILE-R 183
Query: 230 FKKGRCLQDNFYARGDGT----------------------LVYFFTREEVKTMFESAGF- 266
+K+GR D + + + YF + F+ G
Sbjct: 184 YKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLS 243
Query: 267 -VEKQNLID 274
VE++ ID
Sbjct: 244 LVERKGFID 252
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 25/202 (12%), Positives = 55/202 (27%), Gaps = 29/202 (14%)
Query: 69 WDA-FYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVE 127
W A Y +F +R + + N ++GCG GNS + +
Sbjct: 6 WSAQQYL----KFEDERTRPARDLLAQVPLERV--------LNGYDLGCGPGNSTELLTD 53
Query: 128 HCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187
+ + G D ++ + + + D+ W P + D++
Sbjct: 54 RYGVNV--ITGIDSDDDMLEKAADRLP----NTNFGKADL--ATWKP---AQKADLLYAN 102
Query: 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGT 247
V + V++Q+ L+ GG++ + + G
Sbjct: 103 AVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGG 160
Query: 248 LV---YFFTREEVKTMFESAGF 266
+ +
Sbjct: 161 GLRRKPLPPPSDYFNALSPKSS 182
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-06
Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 32/153 (20%)
Query: 67 KNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIV 126
++ +AF H+ + + W I L + + GCG I
Sbjct: 31 EDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLV----VADFGCGDCRLASSIR 86
Query: 127 EHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186
V+ D + + VCD+ P ES+D+ +
Sbjct: 87 NP-------VHCFDLASLDPRVT--------------VCDMA----QVPLEDESVDVAVF 121
Query: 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219
L N + + + LKPGG++ +
Sbjct: 122 CLSLMGTNIRDF---LEEANRVLKPGGLLKVAE 151
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 3e-06
Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 8/134 (5%)
Query: 90 EFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNIL 149
+F ++I+ + ++++GCG G + + + K + G D S +
Sbjct: 24 DFYKMIDEYHDGERKL-----LVDVGCGPGTATLQMAQELKPFE-QIIGSDLSATMIKTA 77
Query: 150 KEHEEYKPDRCHAFVCDVTS-EDWNPPFAPESLD-IVLLIFVLDAINPNKMQHVINQVYK 207
+ +E PD ++S +D+ A + +I ++ + + Y
Sbjct: 78 EVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYA 137
Query: 208 YLKPGGMVLFRDYG 221
L+ G + Y
Sbjct: 138 NLRKDGTIAIWGYA 151
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 4e-06
Identities = 17/114 (14%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH------EEYKPDRCHA 162
+ ++++GCG GN + +++ + + G D S ++ I +E + +R
Sbjct: 31 RRVIDLGCGQGNLLKILLKDSFFEQI--TGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 88
Query: 163 FVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
+T +D D +I V++ ++ +++ ++++ +P +++
Sbjct: 89 IQGALTYQD----KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 5e-05
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNI----LKEHEEYKPDRCHAFV 164
I+++GCG G V + KN V D S AV ++ + DRC +
Sbjct: 224 GEIVDLGCGNG--VIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI 281
Query: 165 CDVTSEDWNPPFAPESLDIVLL---IFVLDAINPNKMQHVINQVYKYLKPGG 213
+ S P + VL A+ N + + + LK G
Sbjct: 282 NNALSG-----VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING 328
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 8e-05
Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 11/118 (9%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTS 169
+++ CG GN + + V+G D + A+ + + + D
Sbjct: 26 VVDATCGNGNDTAFLASLVGENG-RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ 84
Query: 170 EDWNPPFAPESLDIVLLIFVLDAI-------NPNKMQHVINQVYKYLKPGGMVLFRDY 220
+ + V+ P +++ + L GG++ Y
Sbjct: 85 N--MDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 1e-04
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 14/113 (12%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDV 167
+ + IG G ++ H V + + + ++ E D + D
Sbjct: 124 ERAVFIGGGPLPLTGILLSHVYGMRV--NVVEIEPDIAELSRKVIEGLGVDGVNVITGDE 181
Query: 168 TSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220
T D D++++ A + V +++Y+ +++R Y
Sbjct: 182 TVIDGLEF------DVLMV-----AALAEPKRRVFRNIHRYVDTETRIIYRTY 223
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+ +L++G G G + V G + +V L++ E + A DV
Sbjct: 235 RQVLDLGAGYG----ALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVD 290
Query: 169 SEDWNPPFAPESLDIVLL---IFVLDAINPNKMQHVINQVYKYLKPGG---MVLFRDYGR 222
DI++ V A+ + Q +N L+PGG +V
Sbjct: 291 EALT----EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKY 346
Query: 223 YDLVQLRFKKGRCLQDN 239
L++ +F + L+
Sbjct: 347 EPLLEEKFGAFQTLKVA 363
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 30/184 (16%), Positives = 48/184 (26%), Gaps = 27/184 (14%)
Query: 93 EIIEPLSSTKTDTCSTK-------NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENA 145
I P + K T IL++G G G + + G D S
Sbjct: 15 RIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH---GITGTGIDMSSLF 71
Query: 146 VNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVIN 203
K E +R H D A E D+ +
Sbjct: 72 TAQAKRRAEELGVSERVHFIHNDAAG-----YVANEKCDVAACVGATWIAGG--FAGAEE 124
Query: 204 QVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263
+ + LKPGG++L + + + F T + F+
Sbjct: 125 LLAQSLKPGGIMLIGEPYW-----RQLPATEEIAQACGVSSTS---DFLTLPGLVGAFDD 176
Query: 264 AGFV 267
G+
Sbjct: 177 LGYD 180
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 15/118 (12%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDVTS 169
+++ G GN + K VY D E A+ + + + + D
Sbjct: 26 VVDATMGNGNDTAFLAGLSKK----VYAFDVQEQALGKTSQRLSDLGIENTE-LILD--G 78
Query: 170 EDWNPPFAPESLDIVLLIFVL-------DAINPNKMQHVINQVYKYLKPGGMVLFRDY 220
+ + E + + P+ I ++ L+ GG + Y
Sbjct: 79 HENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 2e-04
Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
IL +G G + + + +YG +F+ + L + + + + +
Sbjct: 81 ILYLGIASGTTASHMSDIIGPRGR-IYGVEFAPRVMRDLLTVVRDRRN-----IFPILGD 134
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
P ++ V ++ D P + V+ +L+ GG +L
Sbjct: 135 ARFPEKYRHLVEGVDGLYA-DVAQPEQAAIVVRNARFFLRDGGYMLM 180
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-04
Identities = 26/182 (14%), Positives = 46/182 (25%), Gaps = 15/182 (8%)
Query: 94 IIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE 153
I S T D + + +L I G G + + D +A+ E
Sbjct: 35 ISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIA---LLVATDPDADAIARGNERY 91
Query: 154 EYKPDRCHA-----------FVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVI 202
D F +I+ F + + +
Sbjct: 92 NKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATV 151
Query: 203 NQ-VYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261
+ + GG VL L +L KK + N + + V + +
Sbjct: 152 MNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYN 211
Query: 262 ES 263
S
Sbjct: 212 PS 213
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 2e-04
Identities = 21/203 (10%), Positives = 47/203 (23%), Gaps = 38/203 (18%)
Query: 102 KTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKE---------- 151
+ +L CG + + + V G + SE AV
Sbjct: 17 SLNVVPGARVLVPLCGKSQDMSWLSGQGYH----VVGAELSEAAVERYFTERGEQPHITS 72
Query: 152 ---HEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKY 208
+ Y + D + + A+ + + + +
Sbjct: 73 QGDFKVYAAPGIEIWCGDFFALTARDI---GHCAAFYDRAAMIALPADMRERYVQHLEAL 129
Query: 209 LKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVE 268
+ L L+ L + + + + + + V
Sbjct: 130 MPQACSGL--------LITLEYDQAL----------LEGPPFSVPQTWLHRVMSGNWEVT 171
Query: 269 KQNLIDRRLQVNRGKQIKMYRVW 291
K D RG + + R+
Sbjct: 172 KVGGQDTLHSSARGLKAGLERMD 194
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 23/159 (14%), Positives = 46/159 (28%), Gaps = 19/159 (11%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH--EEYKPDRCHAFVCDVT 168
+++ GCG G S+ V G S + E D + VC++
Sbjct: 121 LVDAGCGRGGSMVMAHRRF---GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML 177
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
+ PF ++ ++ + + ++ ++LK GG +
Sbjct: 178 ----DTPFDKGAVTASWNN---ESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQ 230
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267
K + +F +R E V
Sbjct: 231 PSKWVSQINAHF-------ECNIHSRREYLRAMADNRLV 262
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 5e-04
Identities = 19/133 (14%), Positives = 46/133 (34%), Gaps = 13/133 (9%)
Query: 84 RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE 143
+ L + ++ + + L +G G + + + V Y +++
Sbjct: 56 KSKLAAAIIKGLKVMPIKRDSKI-----LYLGASAGTTPSHVADIADKGIV--YAIEYAP 108
Query: 144 NAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVIN 203
+ L + + + + D P ++ V +I+ D PN+ + +I
Sbjct: 109 RIMRELLDACAEREN-IIPILGDANK----PQEYANIVEKVDVIYE-DVAQPNQAEILIK 162
Query: 204 QVYKYLKPGGMVL 216
+LK GG +
Sbjct: 163 NAKWFLKKGGYGM 175
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 39.9 bits (92), Expect = 7e-04
Identities = 31/246 (12%), Positives = 71/246 (28%), Gaps = 46/246 (18%)
Query: 94 IIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE 153
I E L + +L++GCG G + + N + D ++ +V ++
Sbjct: 21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRIN---KLVCTDIADVSVKQCQQRY 77
Query: 154 EYKPDRCHA-------FVCDVTSEDW---NPPFAPESLDIVLLIFVLDAI--NPNKMQHV 201
E +R + F+ +S++ DI FV + + +
Sbjct: 78 EDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMM 137
Query: 202 INQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261
+ + L PGG + ++L++ G +Y ++
Sbjct: 138 LRNACERLSPGGYFIGTTPNSFELIRRLEAS--------ETESFGNEIYTVKFQKKG--- 186
Query: 262 ESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKSYFVHYLFVTEEVKTMFESAGF--VE 319
+ Y ++ +L + M + V
Sbjct: 187 ------------------DYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVY 228
Query: 320 KQNLID 325
K+ ++
Sbjct: 229 KKTFLE 234
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 26/169 (15%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCD 166
K +L+IG G V++ K V + D + ++++ +R H +
Sbjct: 181 KRLLDIGGNTGKWATQCVQYNKEVEVTIV--DL-PQQLEMMRKQTAGLSGSERIHGHGAN 237
Query: 167 VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL----FRDYGR 222
+ D PF P D V + LD + ++ ++ +V + + V D R
Sbjct: 238 LLDRD--VPF-PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQR 294
Query: 223 YDLVQLRFKKGRCLQD-NFY----ARGDGTLVYFFTREEVKTMFESAGF 266
Y+ CL + Y A G+ F +++ E+AG
Sbjct: 295 YE------TASYCLTQISLYFTAMANGNSK---MFHSDDLIRCIENAGL 334
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.89 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.89 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.87 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.87 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.87 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.87 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.87 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.86 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.86 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.86 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.85 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.85 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.85 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.85 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.84 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.84 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.84 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.84 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.84 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.84 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.84 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.84 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.84 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.84 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.83 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.83 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.83 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.83 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.83 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.83 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.82 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.82 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.81 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.81 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.81 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.81 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.81 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.81 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.81 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.8 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.8 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.8 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.8 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.8 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.8 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.8 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.8 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.8 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.8 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.8 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.8 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.79 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.79 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.79 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.79 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.79 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.79 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.79 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.78 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.78 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.78 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.78 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.78 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.77 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.77 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.77 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.77 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.76 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.76 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.76 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.75 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.74 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.74 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.73 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.73 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.73 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.73 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.72 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.71 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.71 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.71 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.71 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.71 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.7 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.7 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.7 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.7 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.7 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.69 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.69 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.69 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.69 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.69 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.69 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.68 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.68 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.68 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.68 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.67 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.67 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.67 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.67 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.67 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.66 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.66 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.65 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.65 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.65 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.65 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.65 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.64 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.64 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.64 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.63 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.63 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.63 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.63 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.63 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.62 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.62 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.61 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.61 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.61 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.6 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.6 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.6 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.59 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.59 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.59 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.58 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.58 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.58 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.58 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.58 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.58 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.57 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.56 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.56 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.56 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.56 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.56 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.55 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.55 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.55 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.55 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.55 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.54 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.54 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.54 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.54 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.53 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.53 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.53 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.53 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.53 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.52 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.52 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.52 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.52 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.52 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.51 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.51 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.51 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.51 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.51 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.51 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.51 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.51 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.51 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.51 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.51 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.51 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.5 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.5 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.5 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.5 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.5 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.5 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.49 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.48 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.48 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.48 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.48 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.48 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.47 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.47 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.47 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.47 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.47 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.46 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.46 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.45 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.45 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.45 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.44 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.43 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.43 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.43 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.42 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.42 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.42 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.42 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.42 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.42 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.41 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.41 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.41 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.41 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.41 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.41 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.4 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.4 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.4 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.4 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.4 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.39 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.39 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.39 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.38 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.38 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.38 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.37 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.37 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.37 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.37 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.37 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.36 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.34 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.34 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.34 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.33 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.33 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.31 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.31 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.3 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.3 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.3 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.3 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.28 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.27 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.27 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.27 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.25 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.24 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.22 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.2 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.19 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.13 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.12 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.11 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.1 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.09 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.09 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.05 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.03 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.03 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.01 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.01 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.0 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.99 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.99 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.99 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.96 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.94 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.93 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.9 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.89 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.87 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.78 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.77 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.76 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.76 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.75 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.73 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.72 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.72 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.71 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.7 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.69 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.68 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.68 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.59 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.51 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.49 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.47 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.43 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.4 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.37 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.26 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.25 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.23 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.17 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.11 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.99 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.91 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.88 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.88 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.81 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.77 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.47 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.41 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.4 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.3 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.17 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.06 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.86 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.67 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.51 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.37 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.26 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 96.24 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.11 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.1 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.74 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.58 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.88 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.72 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.69 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 94.59 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.52 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.48 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.41 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 94.08 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.05 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.02 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 93.99 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.86 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.84 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 93.83 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 93.8 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.54 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.43 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 93.34 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.34 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.21 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 93.05 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.8 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 92.76 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 92.72 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.52 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 92.39 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 92.36 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 92.08 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.07 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 91.8 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 91.69 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 91.63 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 91.57 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 91.57 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 91.45 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 91.3 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 91.27 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 91.23 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 91.18 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 91.15 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 91.14 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.13 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.0 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 90.97 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 90.93 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 90.92 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 90.67 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 90.55 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 90.47 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 90.46 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 90.4 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 90.33 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 90.3 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 90.26 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 90.15 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 90.14 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 90.11 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.07 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 90.04 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 90.01 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 89.98 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 89.85 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.76 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 89.55 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.48 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 89.44 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 89.44 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 89.4 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 89.16 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 89.11 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 89.01 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 88.94 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 88.74 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 88.72 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 88.26 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 88.13 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 88.12 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 88.11 | |
| 1ej6_A | 1289 | Lambda2; icosahedral, non-equivalence, dsRNA virus | 87.99 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 87.94 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 87.91 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 87.48 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 87.41 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 87.16 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 87.09 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 87.04 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 86.86 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 86.74 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 86.73 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.72 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 86.72 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 86.69 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 86.58 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 86.46 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 86.41 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 86.23 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 86.19 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 86.12 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 85.96 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 85.95 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 85.61 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 85.6 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 85.38 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 85.31 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 84.67 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 84.58 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 84.22 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 84.09 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 84.01 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 83.91 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 83.89 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 83.81 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 83.73 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 83.63 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 83.63 | |
| 3iyl_W | 1299 | VP1; non-enveloped virus, membrane penetration pro | 83.5 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 83.39 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 83.29 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 83.26 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 83.06 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 83.06 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 82.96 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 82.82 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 82.71 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 82.57 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 82.54 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 82.53 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 82.53 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 81.57 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 81.26 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 81.15 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 81.15 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 81.03 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 80.79 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 80.45 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 80.04 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 80.04 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 80.02 |
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=178.03 Aligned_cols=161 Identities=18% Similarity=0.354 Sum_probs=119.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||||||+|..+..+++.+..++++|+|+|+|+.|++.|++++... ..+++++++|+.+ +++ ++||+|
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~----~~~--~~~d~v 143 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD----IAI--ENASMV 143 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT----CCC--CSEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc----ccc--cccccc
Confidence 38899999999999999999987657889999999999999999987653 3579999999974 443 569999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh---------hhcCccccCc-eee--cCCCeeeecc
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR---------FKKGRCLQDN-FYA--RGDGTLVYFF 252 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~--~~~~~~~~~~ 252 (352)
++.++++|+++++...+|++++++|||||+|++.+.......... +.....+... ... .........+
T Consensus 144 ~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 144 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 999999999888888999999999999999999876543321110 0000000000 000 0000112347
Q ss_pred CHHHHHHHHHhCCCceEEeee
Q psy11741 253 TREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 253 ~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
+.+++..+|+++||..+++.+
T Consensus 224 s~~~~~~~L~~AGF~~ve~~f 244 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWF 244 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEE
T ss_pred CHHHHHHHHHHcCCCeEEEEE
Confidence 889999999999999887654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=177.45 Aligned_cols=185 Identities=17% Similarity=0.213 Sum_probs=133.9
Q ss_pred HhhhhHHHHhhhcccccccc--hhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEe
Q psy11741 64 DVAKNWDAFYNVHQNRFFKD--RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCD 140 (352)
Q Consensus 64 ~~~~yw~~~y~~~~~~f~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD 140 (352)
.+..||+.||..+...+..+ ..|....+..++.. +..++.+|||||||+|.++..++. .+. +|+|+|
T Consensus 16 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~vLDiGCG~G~~~~~~~~----~~~~~v~g~D 85 (263)
T 2a14_A 16 LPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGP------GGLQGDTLIDIGSGPTIYQVLAAC----DSFQDITLSD 85 (263)
T ss_dssp CHHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHST------TSCCEEEEEESSCTTCCGGGTTGG----GTEEEEEEEE
T ss_pred CHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHhcC------CCCCCceEEEeCCCccHHHHHHHH----hhhcceeecc
Confidence 46789999998776655554 67877777777643 133478999999999988776665 444 799999
Q ss_pred CCHHHHHHHHhccccCC------------------------------CceE-EEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 141 FSENAVNILKEHEEYKP------------------------------DRCH-AFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 141 ~s~~~l~~a~~~~~~~~------------------------------~~v~-~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+|+.|++.|+++++... .++. ++++|+.+.....+...++||+|+++++
T Consensus 86 ~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~ 165 (263)
T 2a14_A 86 FTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLA 165 (263)
T ss_dssp SCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC
T ss_pred ccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHH
Confidence 99999999988654321 1233 8899998632111123568999999999
Q ss_pred hhcc--ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCe-eeeccCHHHHHHHHHhCCC
Q psy11741 190 LDAI--NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGT-LVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 190 l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~Gf 266 (352)
+||+ +.+++..++++++++|||||.|++...... ..+..+... ....++.+++.++++++||
T Consensus 166 l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~---------------~~~~~g~~~~~~~~~~~~~l~~~l~~aGF 230 (263)
T 2a14_A 166 MECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL---------------PSYMVGKREFSCVALEKGEVEQAVLDAGF 230 (263)
T ss_dssp HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC---------------CEEEETTEEEECCCCCHHHHHHHHHHTTE
T ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecC---------------ccceeCCeEeeccccCHHHHHHHHHHCCC
Confidence 9986 346888999999999999999999864321 111112111 2235799999999999999
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
.++....
T Consensus 231 ~i~~~~~ 237 (263)
T 2a14_A 231 DIEQLLH 237 (263)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 9988754
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=165.03 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=116.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++. .+.+++|+|+|+.|++.|+++. .++.+.++|+.+ +++++++||+|++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~----~~~~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLAS----LGHQIEGLEPATRLVELARQTH----PSVTFHHGTITD----LSDSPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHH----TTCCEEEECCCHHHHHHHHHHC----TTSEEECCCGGG----GGGSCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHh----cCCeEEEEeCCHHHHHHHHHhC----CCCeEEeCcccc----cccCCCCeEEEEeh
Confidence 67999999999999999998 5669999999999999999874 468999999874 45667899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|++.+++..++++++++|+|||.+++.++....... .........+++.+++..+++++||+
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~Gf~ 175 (203)
T 3h2b_A 110 YSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEP--------------MYHPVATAYRWPLPELAQALETAGFQ 175 (203)
T ss_dssp SSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEE--------------ECCSSSCEEECCHHHHHHHHHHTTEE
T ss_pred hhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhh--------------hhchhhhhccCCHHHHHHHHHHCCCc
Confidence 9999997779999999999999999999998766532110 01112234568999999999999999
Q ss_pred eEEeee
Q psy11741 268 EKQNLI 273 (352)
Q Consensus 268 ~~~~~~ 273 (352)
++....
T Consensus 176 ~~~~~~ 181 (203)
T 3h2b_A 176 VTSSHW 181 (203)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 998754
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-22 Score=172.66 Aligned_cols=180 Identities=14% Similarity=0.183 Sum_probs=130.4
Q ss_pred HHHhhHHhhhhHHHHhhhcccccccc--hhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeE
Q psy11741 58 IQTLNEDVAKNWDAFYNVHQNRFFKD--RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVF 135 (352)
Q Consensus 58 ~~~~~~~~~~yw~~~y~~~~~~f~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~ 135 (352)
...+.....+||++.|......|... ...+...+..+.. ..++.+|||+|||+|..+..|++ .|.+
T Consensus 25 ~~~~~~~~~~~Wd~~y~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~vLD~GCG~G~~~~~La~----~G~~ 92 (252)
T 2gb4_A 25 VQKNQVLTLEDWKEKWVTRHISFHQEQGHQLLKKHLDTFLK--------GQSGLRVFFPLCGKAIEMKWFAD----RGHT 92 (252)
T ss_dssp TTTTCCCCHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHT--------TCCSCEEEETTCTTCTHHHHHHH----TTCE
T ss_pred ccccccCCHHHHHHHHhcCCCCcccCCCCHHHHHHHHHhcc--------CCCCCeEEEeCCCCcHHHHHHHH----CCCe
Confidence 45556677889999988765555332 2223333333321 11378999999999999999998 6789
Q ss_pred EEEEeCCHHHHHHHHhcccc------------------CCCceEEEEecCCCCCCCCCCCC-CcceEEEehhhhhccChh
Q psy11741 136 VYGCDFSENAVNILKEHEEY------------------KPDRCHAFVCDVTSEDWNPPFAP-ESLDIVLLIFVLDAINPN 196 (352)
Q Consensus 136 v~gvD~s~~~l~~a~~~~~~------------------~~~~v~~~~~d~~~~~~~~~~~~-~~fD~V~~~~~l~~~~~~ 196 (352)
|+|+|+|+.|++.|+++... ...++.+.++|+.+ ++..+ ++||+|++..++++++++
T Consensus 93 V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~----l~~~~~~~FD~V~~~~~l~~l~~~ 168 (252)
T 2gb4_A 93 VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD----LPRANIGKFDRIWDRGALVAINPG 168 (252)
T ss_dssp EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT----GGGGCCCCEEEEEESSSTTTSCGG
T ss_pred EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc----CCcccCCCEEEEEEhhhhhhCCHH
Confidence 99999999999999776431 23679999999984 44433 799999999999999888
Q ss_pred HHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 197 KMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 197 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
+...+++++.++|||||++++.++.... .. ..+ ..+.++.+++..++.. +|+++...
T Consensus 169 ~~~~~l~~~~~~LkpGG~l~l~~~~~~~--------~~---------~~g-~~~~~~~~el~~~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 169 DHDRYADIILSLLRKEFQYLVAVLSYDP--------TK---------HAG-PPFYVPSAELKRLFGT-KCSMQCLE 225 (252)
T ss_dssp GHHHHHHHHHHTEEEEEEEEEEEEECCT--------TS---------CCC-SSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEEEecCC--------cc---------CCC-CCCCCCHHHHHHHhhC-CeEEEEEe
Confidence 8899999999999999999765432110 00 001 1123789999999987 59887764
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-22 Score=169.37 Aligned_cols=154 Identities=22% Similarity=0.258 Sum_probs=114.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+++|+|+|+.+++.|+++.. .++.+.++|+.+ ++++ ++||+|++.
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~----~~~~-~~fD~v~~~ 113 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLL----AGRTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLS----FEVP-TSIDTIVST 113 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHH----TTCEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSS----CCCC-SCCSEEEEE
T ss_pred CCeEEEeCCCCCHHHHHHHh----CCCeEEEEeCCHHHHHHHHHhCC---CceEEEeCChhh----cCCC-CCeEEEEEC
Confidence 78999999999999999998 56799999999999999998865 568999999984 4444 899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceee-cCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA-RGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
.+++|++..+...+++++.++|||||.+++.++...................+.. ........+++.+++..+++++||
T Consensus 114 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 193 (220)
T 3hnr_A 114 YAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGF 193 (220)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTE
T ss_pred cchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCC
Confidence 9999996555556999999999999999998765443222111000000000000 000111235689999999999999
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
+++....
T Consensus 194 ~v~~~~~ 200 (220)
T 3hnr_A 194 HVTFTRL 200 (220)
T ss_dssp EEEEEEC
T ss_pred EEEEeec
Confidence 9887654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=167.02 Aligned_cols=175 Identities=19% Similarity=0.255 Sum_probs=130.7
Q ss_pred HhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH
Q psy11741 64 DVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE 143 (352)
Q Consensus 64 ~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 143 (352)
....+|+..|......|..... ...+..++... ..++.+|||+|||+|.++..+++ ++.+|+|+|+|+
T Consensus 31 ~~~~~w~~~~~~~~~~~~~~~~--~~~l~~~~~~~------~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~ 98 (235)
T 3lcc_A 31 VEEGGWEKCWEEEITPWDQGRA--TPLIVHLVDTS------SLPLGRALVPGCGGGHDVVAMAS----PERFVVGLDISE 98 (235)
T ss_dssp HHHHHHHHHHHTTCCTTCCSSC--CHHHHHHHHTT------CSCCEEEEEETCTTCHHHHHHCB----TTEEEEEECSCH
T ss_pred cCHHHHHHHHhcCCCCcccCCC--CHHHHHHHHhc------CCCCCCEEEeCCCCCHHHHHHHh----CCCeEEEEECCH
Confidence 3457899888765555542211 01112222211 11256999999999999999987 788999999999
Q ss_pred HHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 144 NAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 144 ~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+++.|+++.... ..++.+.++|+.+. + ++++||+|++..+++++++++...+++++.++|+|||.+++.++.
T Consensus 99 ~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 173 (235)
T 3lcc_A 99 SALAKANETYGSSPKAEYFSFVKEDVFTW----R-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYP 173 (235)
T ss_dssp HHHHHHHHHHTTSGGGGGEEEECCCTTTC----C-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHHhhccCCCcceEEEECchhcC----C-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 9999999987652 35799999999852 2 356999999999999998789999999999999999999998765
Q ss_pred CCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEeeee
Q psy11741 222 RYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLID 274 (352)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~~ 274 (352)
.... .....+.++.+++..+++++||.++.....
T Consensus 174 ~~~~-------------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 174 ITDH-------------------VGGPPYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp CSCC-------------------CSCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred cccc-------------------CCCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence 4210 011123478999999999999999887553
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=165.87 Aligned_cols=158 Identities=21% Similarity=0.361 Sum_probs=118.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC------ceEEEEecCCCCCCCCCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD------RCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
+.+|||+|||+|.++..+++ .+.+++|+|+|+.+++.|+++....+. ++.+.++|+. .+++++++|
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~ 102 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELAS----KGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENAS----SLSFHDSSF 102 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTT----SCCSCTTCE
T ss_pred CCeEEEECCCCCHHHHHHHh----CCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccc----ccCCCCCce
Confidence 78999999999999999998 567999999999999999998765332 6899999987 445667899
Q ss_pred eEEEehhhhhccC-hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhh---c---CccccCceeec-----CCCeee
Q psy11741 182 DIVLLIFVLDAIN-PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFK---K---GRCLQDNFYAR-----GDGTLV 249 (352)
Q Consensus 182 D~V~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~-----~~~~~~ 249 (352)
|+|++..+++|++ +.....+++++.++|+|||.+++.++........... . .......+... ......
T Consensus 103 D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (235)
T 3sm3_A 103 DFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIA 182 (235)
T ss_dssp EEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred eEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceee
Confidence 9999999999993 4556699999999999999999988755422111000 0 00000011111 012344
Q ss_pred eccCHHHHHHHHHhCCCceEEeee
Q psy11741 250 YFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 250 ~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
.+++.+++..+++++||+++....
T Consensus 183 ~~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 183 HHFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp ECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred EeCCHHHHHHHHHHcCCEEEEEEe
Confidence 678999999999999999998755
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-21 Score=161.42 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=112.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|++. ...++.+.++|+.+ + +++++||+|++.
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~----~~~v~~~D~s~~~~~~a~~~---~~~~~~~~~~d~~~----~-~~~~~~D~v~~~ 114 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGL----ADRVTALDGSAEMIAEAGRH---GLDNVEFRQQDLFD----W-TPDRQWDAVFFA 114 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHH----SSEEEEEESCHHHHHHHGGG---CCTTEEEEECCTTS----C-CCSSCEEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHhc---CCCCeEEEeccccc----C-CCCCceeEEEEe
Confidence 679999999999999999984 56999999999999999882 22679999999974 2 457899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCee----eeccCHHHHHHHHHh
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL----VYFFTREEVKTMFES 263 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ll~~ 263 (352)
.+++|++.+....++++++++|+|||.+++.+++.+......................+.+ ..+++.+++.+++++
T Consensus 115 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 194 (218)
T 3ou2_A 115 HWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTA 194 (218)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHH
Confidence 9999997666799999999999999999999877643221111100000000001112221 236799999999999
Q ss_pred CCCceEEee
Q psy11741 264 AGFVEKQNL 272 (352)
Q Consensus 264 ~Gf~~~~~~ 272 (352)
+||++....
T Consensus 195 aGf~v~~~~ 203 (218)
T 3ou2_A 195 LGWSCSVDE 203 (218)
T ss_dssp TTEEEEEEE
T ss_pred CCCEEEeee
Confidence 999966543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=162.94 Aligned_cols=159 Identities=17% Similarity=0.215 Sum_probs=120.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.|+++....+ ++.+.++|+.+ ++++ ++||+|++
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~----~~~~-~~fD~v~~ 115 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKY--PEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSK----YDFE-EKYDMVVS 115 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHC--TTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTT----CCCC-SCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhc----cCCC-CCceEEEE
Confidence 47899999999999999999976 68899999999999999999876554 89999999974 3444 89999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhh---------hcCccccCceee--cCCCeeeeccCHH
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF---------KKGRCLQDNFYA--RGDGTLVYFFTRE 255 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~--~~~~~~~~~~~~~ 255 (352)
..+++|++..+...++++++++|||||.+++.+........... .....+...... .........++.+
T Consensus 116 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (234)
T 3dtn_A 116 ALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMN 195 (234)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHH
T ss_pred eCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHH
Confidence 99999997666678999999999999999998866543322110 000000000000 0111344568899
Q ss_pred HHHHHHHhCCCceEEeee
Q psy11741 256 EVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 256 ~~~~ll~~~Gf~~~~~~~ 273 (352)
++.++++++||+.++...
T Consensus 196 ~~~~ll~~aGF~~v~~~~ 213 (234)
T 3dtn_A 196 QQLNWLKEAGFRDVSCIY 213 (234)
T ss_dssp HHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHcCCCceeeee
Confidence 999999999999998765
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=160.36 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=114.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+++|+|+|+.+++.|+++. ++.+..+|+.. ++ .+++||+|++.
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~----~~-~~~~fD~v~~~ 109 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLA----AGFDVDATDGSPELAAEASRRL-----GRPVRTMLFHQ----LD-AIDAYDAVWAH 109 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHH-----TSCCEECCGGG----CC-CCSCEEEEEEC
T ss_pred CCcEEEECCCCCHHHHHHHH----cCCeEEEECCCHHHHHHHHHhc-----CCceEEeeecc----CC-CCCcEEEEEec
Confidence 77999999999999999998 5679999999999999999886 36788888874 33 57899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC-C
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG-F 266 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G-f 266 (352)
.+++|++.+++..++++++++|||||++++........ .....+....+++.+++..+++++| |
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~~aG~f 174 (211)
T 3e23_A 110 ACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGE---------------GRDKLARYYNYPSEEWLRARYAEAGTW 174 (211)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSC---------------EECTTSCEECCCCHHHHHHHHHHHCCC
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcc---------------cccccchhccCCCHHHHHHHHHhCCCc
Confidence 99999977799999999999999999999976443210 1112233445689999999999999 9
Q ss_pred ceEEeeee
Q psy11741 267 VEKQNLID 274 (352)
Q Consensus 267 ~~~~~~~~ 274 (352)
+++.....
T Consensus 175 ~~~~~~~~ 182 (211)
T 3e23_A 175 ASVAVESS 182 (211)
T ss_dssp SEEEEEEE
T ss_pred EEEEEEec
Confidence 99987653
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=158.29 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=124.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+ +|||+|||+|.++..+++ .+.+++|+|+|+.+++.|+++....+.++.+.++|+.. +++++++||+|++.
T Consensus 31 ~-~vLdiGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~v~~~ 101 (202)
T 2kw5_A 31 G-KILCLAEGEGRNACFLAS----LGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLAD----FDIVADAWEGIVSI 101 (202)
T ss_dssp S-EEEECCCSCTHHHHHHHT----TTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTT----BSCCTTTCSEEEEE
T ss_pred C-CEEEECCCCCHhHHHHHh----CCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhh----cCCCcCCccEEEEE
Confidence 5 999999999999999988 56699999999999999999876545579999999874 44567899999985
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
. .|++.++...+++++.++|+|||.+++.++....... ..+ .......+++.+++..+++ ||+
T Consensus 102 ~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---~~~----------~~~~~~~~~~~~~l~~~l~--Gf~ 164 (202)
T 2kw5_A 102 F--CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY---NTG----------GPKDLDLLPKLETLQSELP--SLN 164 (202)
T ss_dssp C--CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG---TSC----------CSSSGGGCCCHHHHHHHCS--SSC
T ss_pred h--hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccC---CCC----------CCCcceeecCHHHHHHHhc--Cce
Confidence 3 4556688999999999999999999998876543211 000 1122345789999999999 999
Q ss_pred eEEeeeeeeeeeecCCccceeeeeEeeEEe
Q psy11741 268 EKQNLIDRRLQVNRGKQIKMYRVWIQAKSY 297 (352)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (352)
++....... ....+.....+..|++...+
T Consensus 165 v~~~~~~~~-~~~~g~~~~~~~~~i~~~~~ 193 (202)
T 2kw5_A 165 WLIANNLER-NLDEGAYHQGKAALIQLLGQ 193 (202)
T ss_dssp EEEEEEEEE-ECSCSSSSCCEEEEEEEEEC
T ss_pred EEEEEEEEe-ecCCCCCcccHHHHHHHHHH
Confidence 998754332 23344555567788876543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-21 Score=163.98 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=116.0
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.|+++....+ .++.+.++|+. .+++++++||+|++
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~D~v~~ 117 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQ---SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVH----NIPIEDNYADLIVS 117 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHH---SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTT----BCSSCTTCEEEEEE
T ss_pred CEEEEECCCCCHHHHHHHHc---CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHH----HCCCCcccccEEEE
Confidence 39999999999999999986 57899999999999999999876543 47999999997 45566889999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcC-ccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKG-RCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
..+++|+ .++..++++++++|+|||.+++.+.............. ......+. .........++.+++..+++++|
T Consensus 118 ~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aG 194 (219)
T 3dlc_A 118 RGSVFFW--EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWK-EFNRKNISQENVERFQNVLDEIG 194 (219)
T ss_dssp ESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHH-HHHHHHSSHHHHHHHHHHHHHHT
T ss_pred CchHhhc--cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHH-hhhhhccccCCHHHHHHHHHHcC
Confidence 9999999 78899999999999999999998755433111100000 00000000 00001223467899999999999
Q ss_pred CceEEeee
Q psy11741 266 FVEKQNLI 273 (352)
Q Consensus 266 f~~~~~~~ 273 (352)
|+++....
T Consensus 195 f~~v~~~~ 202 (219)
T 3dlc_A 195 ISSYEIIL 202 (219)
T ss_dssp CSSEEEEE
T ss_pred CCeEEEEe
Confidence 99987753
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-20 Score=160.71 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=114.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|+++.... ..++.+..+|+.. +++++++||+|+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~v~ 151 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL---FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQD----FTPEPDSYDVIW 151 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT---CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGG----CCCCSSCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhh----cCCCCCCEEEEE
Confidence 47899999999999999988852 458999999999999999987654 3568899999874 445567899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+++|++.+....+++++.++|+|||++++.+..... ...+..... ....+.+++..+++++|
T Consensus 152 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-------------~~~~~~~~~--~~~~~~~~~~~~l~~aG 216 (241)
T 2ex4_A 152 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-------------GVILDDVDS--SVCRDLDVVRRIICSAG 216 (241)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS-------------SEEEETTTT--EEEEBHHHHHHHHHHTT
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC-------------cceecccCC--cccCCHHHHHHHHHHcC
Confidence 999999997666789999999999999999997754332 011111111 22358999999999999
Q ss_pred CceEEeee
Q psy11741 266 FVEKQNLI 273 (352)
Q Consensus 266 f~~~~~~~ 273 (352)
|.++....
T Consensus 217 f~~~~~~~ 224 (241)
T 2ex4_A 217 LSLLAEER 224 (241)
T ss_dssp CCEEEEEE
T ss_pred CeEEEeee
Confidence 99988754
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-21 Score=166.96 Aligned_cols=151 Identities=15% Similarity=0.296 Sum_probs=111.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|+++.. ++.++++|+.+ +++ +++||+|++.
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~----~~~-~~~fD~v~~~ 117 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLAD----SFGTVEGLELSADMLAIARRRNP----DAVLHHGDMRD----FSL-GRRFSAVTCM 117 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTT----TSSEEEEEESCHHHHHHHHHHCT----TSEEEECCTTT----CCC-SCCEEEEEEC
T ss_pred CCcEEEeCCcCCHHHHHHHH----cCCeEEEEECCHHHHHHHHhhCC----CCEEEECChHH----CCc-cCCcCEEEEc
Confidence 68999999999999999988 55689999999999999998753 68999999984 333 6899999999
Q ss_pred h-hhhccC-hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhh-------hcCcc---------------ccCceeec
Q psy11741 188 F-VLDAIN-PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF-------KKGRC---------------LQDNFYAR 243 (352)
Q Consensus 188 ~-~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-------~~~~~---------------~~~~~~~~ 243 (352)
. +++|+. +++...++++++++|+|||.+++..+..+....... ..+.. ....+...
T Consensus 118 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (263)
T 3pfg_A 118 FSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVA 197 (263)
T ss_dssp TTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEe
Confidence 8 999994 468889999999999999999997543322110000 00000 00000000
Q ss_pred -CC--------CeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 244 -GD--------GTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 244 -~~--------~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
.. .....+++.+++..+|+++||+++.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~ 234 (263)
T 3pfg_A 198 GPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFM 234 (263)
T ss_dssp ETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEE
T ss_pred cCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEe
Confidence 11 11245789999999999999998876
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-21 Score=169.25 Aligned_cols=156 Identities=21% Similarity=0.317 Sum_probs=117.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||||||+|.++..+++ .+.+|+|+|+|+.|++.|+++....+ .++.++++|+.+. .++.+++||+|+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD~v~ 141 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAE----RGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDV---ASHLETPVDLIL 141 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGT---GGGCSSCEEEEE
T ss_pred CCEEEEeCCcchHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHh---hhhcCCCceEEE
Confidence 67999999999999999998 56799999999999999999876543 5799999999842 125578999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCc--cccCceee--cCCCeeeeccCHHHHHHHH
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGR--CLQDNFYA--RGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~ll 261 (352)
+..+++|+ .++..+++++.++|||||++++.+++...........+. .+...... ........+++.+++..++
T Consensus 142 ~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 219 (285)
T 4htf_A 142 FHAVLEWV--ADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWL 219 (285)
T ss_dssp EESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHH
T ss_pred ECchhhcc--cCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHH
Confidence 99999999 677899999999999999999988765432211111110 00000000 1112233568999999999
Q ss_pred HhCCCceEEee
Q psy11741 262 ESAGFVEKQNL 272 (352)
Q Consensus 262 ~~~Gf~~~~~~ 272 (352)
+++||+++...
T Consensus 220 ~~aGf~v~~~~ 230 (285)
T 4htf_A 220 EEAGWQIMGKT 230 (285)
T ss_dssp HHTTCEEEEEE
T ss_pred HHCCCceeeee
Confidence 99999998764
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-20 Score=161.03 Aligned_cols=145 Identities=19% Similarity=0.287 Sum_probs=116.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.|+++.. ..++.++++|+.+ +++++++||+|++.
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~----~~~~~~~fD~v~~~ 123 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSR----TGYKAVGVDISEVMIQKGKERGE--GPDLSFIKGDLSS----LPFENEQFEAIMAI 123 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHTTTC--BTTEEEEECBTTB----CSSCTTCEEEEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHH----cCCeEEEEECCHHHHHHHHhhcc--cCCceEEEcchhc----CCCCCCCccEEEEc
Confidence 78999999999999999998 56799999999999999998853 3679999999984 45668899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|+ .+...++++++++|+|||++++.+++.......... .. ......+...++.+++..+++++||+
T Consensus 124 ~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~l~~~Gf~ 193 (242)
T 3l8d_A 124 NSLEWT--EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSY------PR--LYGKDVVCNTMMPWEFEQLVKEQGFK 193 (242)
T ss_dssp SCTTSS--SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGG------GG--GGTCCCSSCCCCHHHHHHHHHHTTEE
T ss_pred ChHhhc--cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhh------hh--hccccccccCCCHHHHHHHHHHcCCE
Confidence 999999 788899999999999999999988665432211000 00 01122234568999999999999999
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
++...
T Consensus 194 ~~~~~ 198 (242)
T 3l8d_A 194 VVDGI 198 (242)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 98764
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=163.14 Aligned_cols=145 Identities=11% Similarity=0.184 Sum_probs=115.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|+++.... .++.+.++|+.. +++++++||+|++
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~----~~~~~~~fD~v~~ 164 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKL---YATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMET----ATLPPNTYDLIVI 164 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHH---CSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGG----CCCCSSCEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHhh---cCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHH----CCCCCCCeEEEEE
Confidence 47899999999999999998853 347999999999999999987644 678999999874 4456789999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
..+++|++.+++..++++++++|||||++++.+...... ..... .......++.+++..+++++||
T Consensus 165 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~l~~aGf 230 (254)
T 1xtp_A 165 QWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD-------------RFLVD-KEDSSLTRSDIHYKRLFNESGV 230 (254)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--C-------------CEEEE-TTTTEEEBCHHHHHHHHHHHTC
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc-------------cceec-ccCCcccCCHHHHHHHHHHCCC
Confidence 999999987789999999999999999999987432110 00111 1122345789999999999999
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
.++....
T Consensus 231 ~~~~~~~ 237 (254)
T 1xtp_A 231 RVVKEAF 237 (254)
T ss_dssp CEEEEEE
T ss_pred EEEEeee
Confidence 9988754
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=163.36 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=115.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||||||+|.++..+++ .+.+|+|+|+|+.|++.|+++... ++.+.++|+.+. .++++||+|++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~-----~~~~~fD~v~~~ 110 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQE----HFNDITCVEASEEAISHAQGRLKD---GITYIHSRFEDA-----QLPRRYDNIVLT 110 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTT----TCSCEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGC-----CCSSCEEEEEEE
T ss_pred CCcEEEECCCCCHHHHHHHH----hCCcEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHc-----CcCCcccEEEEh
Confidence 67899999999999999988 445899999999999999988653 799999998752 247899999999
Q ss_pred hhhhccChhHHHHHHHHHH-HhcCCCEEEEEEeCCCCchhhHhhhcCccccCc-eee--cCCCeeeeccCHHHHHHHHHh
Q psy11741 188 FVLDAINPNKMQHVINQVY-KYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDN-FYA--RGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~ll~~ 263 (352)
.+++|+ .++..++++++ ++|||||++++.+++.................. .+. .....+..+++.+++.+++++
T Consensus 111 ~~l~~~--~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (250)
T 2p7i_A 111 HVLEHI--DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 188 (250)
T ss_dssp SCGGGC--SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred hHHHhh--cCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence 999999 67789999999 999999999999877654322211100111000 000 001223356899999999999
Q ss_pred CCCceEEee
Q psy11741 264 AGFVEKQNL 272 (352)
Q Consensus 264 ~Gf~~~~~~ 272 (352)
+||+++...
T Consensus 189 ~Gf~~~~~~ 197 (250)
T 2p7i_A 189 AGLQVTYRS 197 (250)
T ss_dssp TTCEEEEEE
T ss_pred CCCeEEEEe
Confidence 999998774
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-21 Score=162.14 Aligned_cols=138 Identities=9% Similarity=0.037 Sum_probs=107.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-------------CCCceEEEEecCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-------------KPDRCHAFVCDVTSEDWNP 174 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-------------~~~~v~~~~~d~~~~~~~~ 174 (352)
+.+|||+|||+|..+..|++ .+.+|+|+|+|+.|++.|+++... ...+++++++|+.+ +
T Consensus 23 ~~~vLD~GCG~G~~~~~la~----~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~----l 94 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSG----QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA----L 94 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHH----HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS----S
T ss_pred CCEEEEeCCCCcHhHHHHHH----CCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc----C
Confidence 78999999999999999998 567999999999999999987542 13579999999984 4
Q ss_pred CCCC-CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccC
Q psy11741 175 PFAP-ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFT 253 (352)
Q Consensus 175 ~~~~-~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (352)
++.+ ++||+|++..+++|+++++...++++++++|||||++++....... . ...+ ..+.++
T Consensus 95 ~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~--------~---------~~~~-~~~~~~ 156 (203)
T 1pjz_A 95 TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ--------A---------LLEG-PPFSVP 156 (203)
T ss_dssp THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS--------S---------SSSS-CCCCCC
T ss_pred CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCc--------c---------ccCC-CCCCCC
Confidence 4443 7899999999999998778889999999999999985544332110 0 0001 112368
Q ss_pred HHHHHHHHHhCCCceEEee
Q psy11741 254 REEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 254 ~~~~~~ll~~~Gf~~~~~~ 272 (352)
.+++..+++. ||+++...
T Consensus 157 ~~el~~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 157 QTWLHRVMSG-NWEVTKVG 174 (203)
T ss_dssp HHHHHHTSCS-SEEEEEEE
T ss_pred HHHHHHHhcC-CcEEEEec
Confidence 9999999998 99877654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=163.40 Aligned_cols=144 Identities=19% Similarity=0.284 Sum_probs=115.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||||||+|.++..+++ .+.+|+|+|+|+.+++.|+++ +.+..+|+.+. ..++++++||+|++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~-------~~~~~~d~~~~--~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKE----EGIESIGVDINEDMIKFCEGK-------FNVVKSDAIEY--LKSLPDKYLDGVMIS 108 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHH----HTCCEEEECSCHHHHHHHHTT-------SEEECSCHHHH--HHTSCTTCBSEEEEE
T ss_pred CCeEEEEeCCCCHHHHHHHh----CCCcEEEEECCHHHHHHHHhh-------cceeeccHHHH--hhhcCCCCeeEEEEC
Confidence 68999999999999999988 456899999999999999876 67888887642 014567899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|++.++...+++++.++|||||++++.+++.......... + ....+..+++.+++..+++++||+
T Consensus 109 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---------~--~~~~~~~~~~~~~l~~~l~~aGf~ 177 (240)
T 3dli_A 109 HFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINF---------Y--IDPTHKKPVHPETLKFILEYLGFR 177 (240)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHH---------T--TSTTCCSCCCHHHHHHHHHHHTCE
T ss_pred CchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHH---------h--cCccccccCCHHHHHHHHHHCCCe
Confidence 99999977788999999999999999999988775543222110 0 112344568899999999999999
Q ss_pred eEEeeeee
Q psy11741 268 EKQNLIDR 275 (352)
Q Consensus 268 ~~~~~~~~ 275 (352)
++......
T Consensus 178 ~~~~~~~~ 185 (240)
T 3dli_A 178 DVKIEFFE 185 (240)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 98876543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=167.63 Aligned_cols=157 Identities=15% Similarity=0.254 Sum_probs=116.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCC-CCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPF-APESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~-~~~~fD~V 184 (352)
+.+|||+|||+|.++..+++. +..+++|+|+|+.|++.|+++....+ .++.+.++|+.+ .++ ++++||+|
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~fD~v 137 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERA---GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG----RHMDLGKEFDVI 137 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHH---TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT----SCCCCSSCEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc----cccCCCCCcCEE
Confidence 789999999999999998874 34489999999999999999876543 468999999974 334 46899999
Q ss_pred Eehhhhhc--cChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhc---Cc-----------ccc---Cceee---
Q psy11741 185 LLIFVLDA--INPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK---GR-----------CLQ---DNFYA--- 242 (352)
Q Consensus 185 ~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~---~~-----------~~~---~~~~~--- 242 (352)
++..+++| .+.++...+++++.++|+|||.+++..++....... +.. +. .+. ...+.
T Consensus 138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 216 (298)
T 1ri5_A 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILER-YKQGRMSNDFYKIELEKMEDVPMESVREYRFTL 216 (298)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH-HHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEE
T ss_pred EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHH-HccCccCCeeEEEEeCccccccccccceEEEEE
Confidence 99999988 456889999999999999999999988664322110 000 00 000 00010
Q ss_pred --cCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 243 --RGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 243 --~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
.......++++.+++..+++++||+++...
T Consensus 217 ~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~ 248 (298)
T 1ri5_A 217 LDSVNNCIEYFVDFTRMVDGFKRLGLSLVERK 248 (298)
T ss_dssp TTSCSSEEEECCCHHHHHHHHHTTTEEEEEEE
T ss_pred chhhcCCcccccCHHHHHHHHHHcCCEEEEec
Confidence 111234567899999999999999988763
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.2e-20 Score=154.98 Aligned_cols=156 Identities=20% Similarity=0.314 Sum_probs=119.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|..+..++.. ++.+++|+|+|+.|++.|+++....+.++.+.++|+.+ +++++++||+|++.
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~v~~~ 96 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVE---DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRK----LPFKDESMSFVYSY 96 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHH---TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTS----CCSCTTCEEEEEEC
T ss_pred CCEEEEECCCCCHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhh----CCCCCCceeEEEEc
Confidence 689999999999985544443 67799999999999999999876555678999999974 45667899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceee---cCCCeeeeccCHHHHHHHHHhC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA---RGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
.+++|++.++...++++++++|+|||.+++.+++..+... ..+..+....+. ........+++.+++..+++.+
T Consensus 97 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 173 (209)
T 2p8j_A 97 GTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERY---NKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDM 173 (209)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTT---TCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTS
T ss_pred ChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhc---cchhhhccccceeccCCCceeEEecCHHHHHHHHhhc
Confidence 9999998789999999999999999999998876543211 111112222221 1223334678999999999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||...+...
T Consensus 174 g~~~~~~~~ 182 (209)
T 2p8j_A 174 KVLFKEDRV 182 (209)
T ss_dssp EEEEEEEEE
T ss_pred Cceeeeeee
Confidence 998876543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=161.60 Aligned_cols=155 Identities=21% Similarity=0.300 Sum_probs=114.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.|+++.. ..++.+.++|+. .+++++++||+|+
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~----~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~----~~~~~~~~fD~v~ 113 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEH----GAKKVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIE----DIAIEPDAYNVVL 113 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT----TCSEEEEEESCHHHHHHHHHHCC--CTTEEEEECCGG----GCCCCTTCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHc----CCCEEEEEECCHHHHHHHHHhhc--cCCeEEEEcchh----hCCCCCCCeEEEE
Confidence 4789999999999999999984 33 89999999999999999876 467999999997 4456678999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh-----hhcCcc---ccCceee--------cCCCeee
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR-----FKKGRC---LQDNFYA--------RGDGTLV 249 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~--------~~~~~~~ 249 (352)
+..+++|+ +++..++++++++|||||.+++...++....... ...+.. ....++. .......
T Consensus 114 ~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (253)
T 3g5l_A 114 SSLALHYI--ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQK 191 (253)
T ss_dssp EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEE
T ss_pred Echhhhhh--hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCcc
Confidence 99999999 7889999999999999999999765432110000 000000 0000000 0011122
Q ss_pred eccCHHHHHHHHHhCCCceEEeee
Q psy11741 250 YFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 250 ~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
+..+.+++.++++++||+++.+..
T Consensus 192 ~~~t~~~~~~~l~~aGF~~~~~~e 215 (253)
T 3g5l_A 192 YHRTVTTYIQTLLKNGFQINSVIE 215 (253)
T ss_dssp ECCCHHHHHHHHHHTTEEEEEEEC
T ss_pred EecCHHHHHHHHHHcCCeeeeeec
Confidence 334999999999999999988753
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=164.66 Aligned_cols=152 Identities=17% Similarity=0.226 Sum_probs=115.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+ .++.+.++|+. .+++++++||+|+
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~----~l~~~~~~fD~V~ 108 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPF----VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE----QMPFTDERFHIVT 108 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-----CCCSCTTCEEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHH----hCCCCCCCEEEEE
Confidence 3789999999999999999885 3499999999999999998876543 57999999987 4567788999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+++|+ .++..++++++++|||||++++.+...+........... . .......+...++.+++.++++++|
T Consensus 109 ~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~l~~aG 181 (260)
T 1vl5_A 109 CRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNY-V----EKERDYSHHRAWKKSDWLKMLEEAG 181 (260)
T ss_dssp EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHH-H----HHHHCTTCCCCCBHHHHHHHHHHHT
T ss_pred EhhhhHhc--CCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHH-H----HHhcCccccCCCCHHHHHHHHHHCC
Confidence 99999999 678899999999999999999976543322111100000 0 0001122334578999999999999
Q ss_pred CceEEeee
Q psy11741 266 FVEKQNLI 273 (352)
Q Consensus 266 f~~~~~~~ 273 (352)
|.++....
T Consensus 182 f~~~~~~~ 189 (260)
T 1vl5_A 182 FELEELHC 189 (260)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEE
Confidence 99887654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=162.84 Aligned_cols=105 Identities=20% Similarity=0.397 Sum_probs=89.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|+++....+.++.+.++|+.+ ++. +++||+|++.
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~----~~~-~~~fD~v~~~ 112 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAE----RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE----IAF-KNEFDAVTMF 112 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG----CCC-CSCEEEEEEC
T ss_pred CCEEEEeCCCCCHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh----ccc-CCCccEEEEc
Confidence 67999999999999999998 56799999999999999999877656679999999985 333 3689999986
Q ss_pred h-hhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 188 F-VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 188 ~-~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
. ++++++.++...++++++++|+|||.+++...+
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 113 FSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp SSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 4 566667778999999999999999999986543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=165.74 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=117.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+.+|||||||+|.++..+++ .+.+|+|+|+|+.|++.|+++....+ .++.++++|+.+ +++ +++||+
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~----~~~-~~~fD~ 153 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLD----LGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA----FAL-DKRFGT 153 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHT----TTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB----CCC-SCCEEE
T ss_pred CCcEEEEeccCCHHHHHHHH----cCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc----CCc-CCCcCE
Confidence 45999999999999999998 56789999999999999999887654 679999999985 344 689998
Q ss_pred EEeh-hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhh--------hcCcc--ccCc-----------ee
Q psy11741 184 VLLI-FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF--------KKGRC--LQDN-----------FY 241 (352)
Q Consensus 184 V~~~-~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~--------~~~~~--~~~~-----------~~ 241 (352)
|++. .+++++++++...++++++++|+|||.|++..++......... ..+.. +... +.
T Consensus 154 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 233 (299)
T 3g2m_A 154 VVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIH 233 (299)
T ss_dssp EEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEE
T ss_pred EEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEE
Confidence 8864 6788887778999999999999999999998877643211000 00000 0000 00
Q ss_pred ecC--------CCeeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 242 ARG--------DGTLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 242 ~~~--------~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
... .....++++.+++..+++++||+++....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~ 273 (299)
T 3g2m_A 234 PADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTP 273 (299)
T ss_dssp ESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEE
T ss_pred eccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEe
Confidence 000 11234578999999999999999998753
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=164.40 Aligned_cols=151 Identities=20% Similarity=0.298 Sum_probs=119.1
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|+++.... .++.+.++|+.+ +++++++||+|+
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~----~~~~~~~fD~v~ 125 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKY---GAHTHGIDICSNIVNMANERVSGN-NKIIFEANDILT----KEFPENNFDLIY 125 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTT----CCCCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEECcccc----CCCCCCcEEEEe
Confidence 347899999999999999999963 569999999999999999987654 789999999984 456688999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+++|+++.++..+++++.++|||||.+++.++......... ..+ ..........+++.+++..+++++|
T Consensus 126 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~l~~~G 197 (266)
T 3ujc_A 126 SRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWD----DEF----KEYVKQRKYTLITVEEYADILTACN 197 (266)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCC----HHH----HHHHHHHTCCCCCHHHHHHHHHHTT
T ss_pred HHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccch----HHH----HHHHhcCCCCCCCHHHHHHHHHHcC
Confidence 99999999888999999999999999999999876443211000 000 0000001123578999999999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|.++...
T Consensus 198 f~~~~~~ 204 (266)
T 3ujc_A 198 FKNVVSK 204 (266)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 9998764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-20 Score=160.46 Aligned_cols=184 Identities=18% Similarity=0.276 Sum_probs=127.7
Q ss_pred hhhhHHHHhhhcccccccc--hhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeC
Q psy11741 65 VAKNWDAFYNVHQNRFFKD--RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDF 141 (352)
Q Consensus 65 ~~~yw~~~y~~~~~~f~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~ 141 (352)
...||+.+|......+... ..+....+..++.. +..++.+|||+|||+|.++..++. .+. +|+|+|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~vLDlGcG~G~~~~~l~~----~~~~~v~gvD~ 87 (265)
T 2i62_A 18 PRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCL------GAVKGELLIDIGSGPTIYQLLSAC----ESFTEIIVSDY 87 (265)
T ss_dssp HHHHHHHHHCCCSSCHHHHHHHHHHHHHHHHHHHS------SSCCEEEEEEESCTTCCGGGTTGG----GTEEEEEEEES
T ss_pred HHHHHHHHhCcCCcchhHHHHHHhhHHHHHHHhcc------cccCCCEEEEECCCccHHHHHHhh----cccCeEEEecC
Confidence 4679999997655433221 11211222233322 123478999999999999998887 444 8999999
Q ss_pred CHHHHHHHHhccccCCC------------------------------ce-EEEEecCCCCCCCCCCCCCcceEEEehhhh
Q psy11741 142 SENAVNILKEHEEYKPD------------------------------RC-HAFVCDVTSEDWNPPFAPESLDIVLLIFVL 190 (352)
Q Consensus 142 s~~~l~~a~~~~~~~~~------------------------------~v-~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l 190 (352)
|+.|++.|+++....+. ++ .+.++|+.+.....+...++||+|++..++
T Consensus 88 s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l 167 (265)
T 2i62_A 88 TDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCL 167 (265)
T ss_dssp CHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCH
T ss_pred CHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhh
Confidence 99999999888654321 27 899999986321111223799999999999
Q ss_pred hccCh--hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCe-eeeccCHHHHHHHHHhCCCc
Q psy11741 191 DAINP--NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGT-LVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 191 ~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~Gf~ 267 (352)
+++.+ .++..+++++.++|||||+|++.+.... .++..+... ....++.+++..+++++||.
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 232 (265)
T 2i62_A 168 DAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKS---------------SYYMIGEQKFSSLPLGWETVRDAVEEAGYT 232 (265)
T ss_dssp HHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC---------------CEEEETTEEEECCCCCHHHHHHHHHHTTCE
T ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCC---------------ceEEcCCccccccccCHHHHHHHHHHCCCE
Confidence 95532 5889999999999999999999864321 122222222 23457899999999999999
Q ss_pred eEEeee
Q psy11741 268 EKQNLI 273 (352)
Q Consensus 268 ~~~~~~ 273 (352)
++....
T Consensus 233 ~~~~~~ 238 (265)
T 2i62_A 233 IEQFEV 238 (265)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988754
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=154.77 Aligned_cols=143 Identities=15% Similarity=0.243 Sum_probs=117.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++... +..+++|+|+|+.+++.|+++....+ .++.+..+|+. .+++++++||+|+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~----~~~~~~~~fD~v~ 111 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVG-EKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN----KIPLPDNTVDFIF 111 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHT-TTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTT----BCSSCSSCEEEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccc----cCCCCCCCeeEEE
Confidence 378999999999999999998753 55799999999999999999876533 47999999987 3456678999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+++|+ .+...+++++.++|+|||.+++.++..... .........++.+++..+++++|
T Consensus 112 ~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~G 172 (219)
T 3dh0_A 112 MAFTFHEL--SEPLKFLEELKRVAKPFAYLAIIDWKKEER-----------------DKGPPPEEVYSEWEVGLILEDAG 172 (219)
T ss_dssp EESCGGGC--SSHHHHHHHHHHHEEEEEEEEEEEECSSCC-----------------SSSCCGGGSCCHHHHHHHHHHTT
T ss_pred eehhhhhc--CCHHHHHHHHHHHhCCCeEEEEEEeccccc-----------------ccCCchhcccCHHHHHHHHHHCC
Confidence 99999999 678999999999999999999987654321 01112234578999999999999
Q ss_pred CceEEeee
Q psy11741 266 FVEKQNLI 273 (352)
Q Consensus 266 f~~~~~~~ 273 (352)
|+++....
T Consensus 173 f~~~~~~~ 180 (219)
T 3dh0_A 173 IRVGRVVE 180 (219)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEe
Confidence 99887643
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-20 Score=160.53 Aligned_cols=152 Identities=17% Similarity=0.209 Sum_probs=116.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++. +.+++|+|+|+.|++.|+++....+ .++.+.++|+. .+++++++||+|+
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~----~~~~~~~~fD~v~ 92 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPY----VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE----SLPFPDDSFDIIT 92 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT----BCCSCTTCEEEEE
T ss_pred CCCEEEEEccCcCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccc----cCCCCCCcEEEEE
Confidence 4789999999999999999884 4489999999999999998875433 57999999987 4556678999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+++|+ .++..++++++++|||||++++.+...+.......... .......+.+...++.+++..+++++|
T Consensus 93 ~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ll~~aG 165 (239)
T 1xxl_A 93 CRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVN-----HLNRLRDPSHVRESSLSEWQAMFSANQ 165 (239)
T ss_dssp EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHH-----HHHHHHCTTCCCCCBHHHHHHHHHHTT
T ss_pred ECCchhhc--cCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHH-----HHHHhccccccCCCCHHHHHHHHHHCC
Confidence 99999999 67889999999999999999998765433221110000 000001122334578999999999999
Q ss_pred CceEEeee
Q psy11741 266 FVEKQNLI 273 (352)
Q Consensus 266 f~~~~~~~ 273 (352)
|.++....
T Consensus 166 f~~~~~~~ 173 (239)
T 1xxl_A 166 LAYQDIQK 173 (239)
T ss_dssp EEEEEEEE
T ss_pred CcEEEEEe
Confidence 99887643
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-19 Score=158.61 Aligned_cols=149 Identities=21% Similarity=0.302 Sum_probs=106.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-----------------------------
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----------------------------- 157 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----------------------------- 157 (352)
++.+|||||||+|..+..++.. .+.+|+|+|+|+.|++.|++++....
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 147 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACS---HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG---GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhcc---CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence 3789999999999954433332 45699999999999999988543210
Q ss_pred --CceEEEEecCCCCC-CC-CCCCCCcceEEEehhhhhccCh--hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhh
Q psy11741 158 --DRCHAFVCDVTSED-WN-PPFAPESLDIVLLIFVLDAINP--NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFK 231 (352)
Q Consensus 158 --~~v~~~~~d~~~~~-~~-~~~~~~~fD~V~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 231 (352)
..+.++.+|+.... .. ..+++++||+|++.++++|+.+ +++..++++++++|||||+|++.....
T Consensus 148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~--------- 218 (289)
T 2g72_A 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE--------- 218 (289)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES---------
T ss_pred HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecC---------
Confidence 01456777887521 10 1234577999999999999543 589999999999999999999974211
Q ss_pred cCccccCceeecCCCe-eeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 232 KGRCLQDNFYARGDGT-LVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 232 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
..++..+... ...+++.+++.++++++||.++....
T Consensus 219 ------~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 255 (289)
T 2g72_A 219 ------ESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRT 255 (289)
T ss_dssp ------CCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ------cceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeE
Confidence 1122222222 23468999999999999999988754
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-20 Score=162.72 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=114.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||||||+|.++..+++ ++.+|+|+|+|+.|++.|+++. .++.+.++|+.. +++ +++||+|++
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~----~~~-~~~fD~v~~ 123 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQ----SGAEVLGTDNAATMIEKARQNY----PHLHFDVADARN----FRV-DKPLDAVFS 123 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHC----TTSCEEECCTTT----CCC-SSCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHh----CCCeEEEEECCHHHHHHHHhhC----CCCEEEECChhh----CCc-CCCcCEEEE
Confidence 378999999999999999998 7789999999999999998875 468899999874 444 579999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccC-ceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQD-NFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
..+++|+ .++..++++++++|||||++++..+...............+.. ............+++.+++..+++++|
T Consensus 124 ~~~l~~~--~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 201 (279)
T 3ccf_A 124 NAMLHWV--KEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQG 201 (279)
T ss_dssp ESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHT
T ss_pred cchhhhC--cCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcC
Confidence 9999999 6788999999999999999999877654321111000000000 000001112234678999999999999
Q ss_pred CceEEeee
Q psy11741 266 FVEKQNLI 273 (352)
Q Consensus 266 f~~~~~~~ 273 (352)
|.++....
T Consensus 202 f~~~~~~~ 209 (279)
T 3ccf_A 202 FDVTYAAL 209 (279)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 99987653
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=154.77 Aligned_cols=153 Identities=14% Similarity=0.212 Sum_probs=111.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+++|+|+|+.+++.|+++ .++.+...|+.+.........++||+|++.
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 123 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALAD----RGIEAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDLICAN 123 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHT----TTCEEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHH----CCCEEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCCCccEEEEC
Confidence 68999999999999999988 567999999999999999987 346778877764311111234569999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCcee---ecCCCeeeeccCHHHHHHHHHhC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFY---ARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
.+++ . .++..++++++++|+|||++++.++++.......+.. ......+. ........++++.+++..+++++
T Consensus 124 ~~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 199 (227)
T 3e8s_A 124 FALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQD-GWREESFAGFAGDWQPMPWYFRTLASWLNALDMA 199 (227)
T ss_dssp SCCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSC-EEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHT
T ss_pred chhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCccccCcccccc-ccchhhhhccccCcccceEEEecHHHHHHHHHHc
Confidence 9998 4 6778999999999999999999987654321110000 00000000 01123455678999999999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||.++.+..
T Consensus 200 Gf~~~~~~~ 208 (227)
T 3e8s_A 200 GLRLVSLQE 208 (227)
T ss_dssp TEEEEEEEC
T ss_pred CCeEEEEec
Confidence 999988643
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=161.28 Aligned_cols=149 Identities=15% Similarity=0.121 Sum_probs=114.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|++.|+++.... ..++.+.++|+. .+++++++||+|
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~fD~v 154 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKF---GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL----EIPCEDNSYDFI 154 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT----SCSSCTTCEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcc----cCCCCCCCEeEE
Confidence 47899999999999999999864 459999999999999999887543 357999999987 456678899999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..+++|+ .++..++++++++|||||++++.++........... ..++... ....+.+.+++..+++++
T Consensus 155 ~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~l~~a 224 (297)
T 2o57_A 155 WSQDAFLHS--PDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI------QPILDRI--KLHDMGSLGLYRSLAKEC 224 (297)
T ss_dssp EEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGG------HHHHHHH--TCSSCCCHHHHHHHHHHT
T ss_pred Eecchhhhc--CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHH------HHHHHHh--cCCCCCCHHHHHHHHHHC
Confidence 999999999 568999999999999999999987643321100000 0000000 001246899999999999
Q ss_pred CCceEEee
Q psy11741 265 GFVEKQNL 272 (352)
Q Consensus 265 Gf~~~~~~ 272 (352)
||.++...
T Consensus 225 Gf~~~~~~ 232 (297)
T 2o57_A 225 GLVTLRTF 232 (297)
T ss_dssp TEEEEEEE
T ss_pred CCeEEEEE
Confidence 99988764
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-19 Score=154.35 Aligned_cols=151 Identities=15% Similarity=0.221 Sum_probs=112.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++ .+.+++|+|+|+.|++.|+++......++.+.++|+. .+++++++||+|++
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~----~~~~~~~~fD~v~~ 110 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIA----RGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADAR----AIPLPDESVHGVIV 110 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHT----TTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTT----SCCSCTTCEEEEEE
T ss_pred CCCEEEEeCCcCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccc----cCCCCCCCeeEEEE
Confidence 378999999999999999998 4679999999999999999987434578999999997 44566789999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCc-hh---hHhhhcCccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYD-LV---QLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
..+++|+ .+...+++++.++|+|||.+++. +.... .. ...... ..... ..........+++.+++.++++
T Consensus 111 ~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 184 (263)
T 2yqz_A 111 VHLWHLV--PDWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWR-AFAAE--EGFPVERGLHAKRLKEVEEALR 184 (263)
T ss_dssp ESCGGGC--TTHHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHH-HHHHH--HTCCCCCCHHHHHHHHHHHHHH
T ss_pred CCchhhc--CCHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHH-HHHHH--hCCCcccccccCCHHHHHHHHH
Confidence 9999999 67889999999999999999987 22210 01 000000 00000 0000111334678899999999
Q ss_pred hCCCceEEe
Q psy11741 263 SAGFVEKQN 271 (352)
Q Consensus 263 ~~Gf~~~~~ 271 (352)
++||.++..
T Consensus 185 ~~Gf~~~~~ 193 (263)
T 2yqz_A 185 RLGLKPRTR 193 (263)
T ss_dssp HTTCCCEEE
T ss_pred HcCCCcceE
Confidence 999997765
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.6e-20 Score=168.90 Aligned_cols=159 Identities=18% Similarity=0.268 Sum_probs=118.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC---------CCceEEEEecCCCCCC--CCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK---------PDRCHAFVCDVTSEDW--NPP 175 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~---------~~~v~~~~~d~~~~~~--~~~ 175 (352)
++.+|||+|||+|.++..+++.+. ++.+|+|+|+|+.|++.|++++... ..++.++++|+.+... ..+
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVG-EHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHT-TTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 478999999999999999998764 5679999999999999999986422 2689999999974210 116
Q ss_pred CCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHH
Q psy11741 176 FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTRE 255 (352)
Q Consensus 176 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (352)
+++++||+|++..+++|+ .++..++++++++|||||+|++.++................ + .......++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLS--TNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPIL----Y---GECLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHH----H---HTTCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcC--CCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHH----h---hcccccCCCHH
Confidence 678899999999999999 67899999999999999999998754321110000000000 0 00111246789
Q ss_pred HHHHHHHhCCCceEEeeeee
Q psy11741 256 EVKTMFESAGFVEKQNLIDR 275 (352)
Q Consensus 256 ~~~~ll~~~Gf~~~~~~~~~ 275 (352)
++..+++++||..++.....
T Consensus 233 ~~~~ll~~aGF~~v~~~~~~ 252 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVSVG 252 (383)
T ss_dssp HHHHHHHHTTCCCEEEEEEE
T ss_pred HHHHHHHHCCCceEEEEecc
Confidence 99999999999988765433
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=155.89 Aligned_cols=156 Identities=15% Similarity=0.269 Sum_probs=116.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+++|+|+|+.|++.|+++....+.++.+.++|+.+ ++++ ++||+|++.
T Consensus 38 ~~~vLdiG~G~G~~~~~l~~----~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~-~~fD~v~~~ 108 (246)
T 1y8c_A 38 FDDYLDLACGTGNLTENLCP----KFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN----LNIN-RKFDLITCC 108 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGG----GSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG----CCCS-CCEEEEEEC
T ss_pred CCeEEEeCCCCCHHHHHHHH----CCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEeccccc----CCcc-CCceEEEEc
Confidence 78999999999999999988 45689999999999999999876555579999999874 3343 789999999
Q ss_pred h-hhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCc---------cccCc------------eeecC
Q psy11741 188 F-VLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGR---------CLQDN------------FYARG 244 (352)
Q Consensus 188 ~-~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~---------~~~~~------------~~~~~ 244 (352)
. +++|+ ++++...++++++++|+|||.+++...++...... +.... ..+.. ++...
T Consensus 109 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (246)
T 1y8c_A 109 LDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQV-LGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRD 187 (246)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTT-TTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhh-cCcceEEecCCcEEEEEecccCCceEEEEEEEEEec
Confidence 8 99999 55789999999999999999999976653221110 00000 00000 00001
Q ss_pred C--------CeeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 245 D--------GTLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 245 ~--------~~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
+ ..+..+++.+++..+++++||+++....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~ 224 (246)
T 1y8c_A 188 GEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVD 224 (246)
T ss_dssp SSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred CCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEc
Confidence 1 1234678999999999999999988754
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=161.11 Aligned_cols=159 Identities=12% Similarity=0.137 Sum_probs=114.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++.++ .+.+|+|+|+|+.+++.|+++....+.++.+.++|+.+ +++ +++||+|++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~----~~~-~~~fD~v~~ 95 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLP-EGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE----IEL-NDKYDIAIC 95 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSC-TTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTT----CCC-SSCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhh----cCc-CCCeeEEEE
Confidence 478999999999999999999762 25899999999999999999987666689999999984 344 469999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchh-hHhhhcCc-------cccCceee-cCCCeeeeccCHHHH
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV-QLRFKKGR-------CLQDNFYA-RGDGTLVYFFTREEV 257 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~ 257 (352)
..+++|+ .+...++++++++|||||++++.++...... ......+. ......+. ........+....++
T Consensus 96 ~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (284)
T 3gu3_A 96 HAFLLHM--TTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKI 173 (284)
T ss_dssp ESCGGGC--SSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTH
T ss_pred CChhhcC--CCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHH
Confidence 9999999 6778999999999999999999887611000 00000000 00000000 000011123456689
Q ss_pred HHHHHhCCCceEEeee
Q psy11741 258 KTMFESAGFVEKQNLI 273 (352)
Q Consensus 258 ~~ll~~~Gf~~~~~~~ 273 (352)
..+++++||..+....
T Consensus 174 ~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 174 PIYLSELGVKNIECRV 189 (284)
T ss_dssp HHHHHHTTCEEEEEEE
T ss_pred HHHHHHcCCCeEEEEE
Confidence 9999999999887643
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=156.09 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=111.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++.+ ++.+++|+|+|+.|++.|+++. .++.+.++|+.. ++ ++++||+|++
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~----~~-~~~~fD~v~~ 101 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRY--GVNVITGIDSDDDMLEKAADRL----PNTNFGKADLAT----WK-PAQKADLLYA 101 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHH--CTTSEEEEESCHHHHHHHHHHS----TTSEEEECCTTT----CC-CSSCEEEEEE
T ss_pred CCCEEEEecCcCCHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhC----CCcEEEECChhh----cC-ccCCcCEEEE
Confidence 47899999999999999999976 6779999999999999999872 568999999874 34 4789999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhc---CccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK---GRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
..+++|+ .++..++++++++|+|||.+++.+++........... ....+.............+++.+++.+++++
T Consensus 102 ~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (259)
T 2p35_A 102 NAVFQWV--PDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSP 179 (259)
T ss_dssp ESCGGGS--TTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGG
T ss_pred eCchhhC--CCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHh
Confidence 9999999 7889999999999999999999876543211110000 0000000000000123456899999999999
Q ss_pred CCCceE
Q psy11741 264 AGFVEK 269 (352)
Q Consensus 264 ~Gf~~~ 269 (352)
+||.+.
T Consensus 180 aGf~v~ 185 (259)
T 2p35_A 180 KSSRVD 185 (259)
T ss_dssp GEEEEE
T ss_pred cCCceE
Confidence 999754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-19 Score=152.39 Aligned_cols=151 Identities=15% Similarity=0.252 Sum_probs=111.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC------CceEEEEecCCCCCCCCCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP------DRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
+.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.|++++...+ .++.+.++|+. ..+.+.++|
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~----~~~~~~~~f 103 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDS--FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT----YQDKRFHGY 103 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCT--TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT----SCCGGGCSC
T ss_pred CCEEEEeCCCCCHHHHHHHhhC--CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc----cccccCCCc
Confidence 7799999999999999999854 55799999999999999999875432 27999999985 334446799
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHH---
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVK--- 258 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 258 (352)
|+|++..+++|++.++...+++++.++|||||++++....... ..+ .. +.. .......+...++.+++.
T Consensus 104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~---~~~--~~-~~~--~~~~~~~~~~~~~~~~l~~~~ 175 (217)
T 3jwh_A 104 DAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYN---VKF--AN-LPA--GKLRHKDHRFEWTRSQFQNWA 175 (217)
T ss_dssp SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHH---HHT--C--------------CCSCBCHHHHHHHH
T ss_pred CEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccc---hhh--cc-ccc--ccccccccccccCHHHHHHHH
Confidence 9999999999997777899999999999999977775432111 000 00 000 001112333457899998
Q ss_pred -HHHHhCCCceEEee
Q psy11741 259 -TMFESAGFVEKQNL 272 (352)
Q Consensus 259 -~ll~~~Gf~~~~~~ 272 (352)
.+++++||++....
T Consensus 176 ~~~~~~~Gf~v~~~~ 190 (217)
T 3jwh_A 176 NKITERFAYNVQFQP 190 (217)
T ss_dssp HHHHHHSSEEEEECC
T ss_pred HHHHHHcCceEEEEe
Confidence 89999999886653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.8e-19 Score=151.47 Aligned_cols=154 Identities=19% Similarity=0.272 Sum_probs=112.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++ .+. +++|+|+|+.|++.|+++... .++.+.++|+.. +++++++||+|+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~----~~~~~~~fD~v~ 112 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHE----HGASYVLGLDLSEKMLARARAAGPD--TGITYERADLDK----LHLPQDSFDLAY 112 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHH----TTCSEEEEEESCHHHHHHHHHTSCS--SSEEEEECCGGG----CCCCTTCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHH----CCCCeEEEEcCCHHHHHHHHHhccc--CCceEEEcChhh----ccCCCCCceEEE
Confidence 378999999999999999988 444 899999999999999988653 368999999874 345578999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh--h---hcCcc--ccCceee--------cCCCeeee
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR--F---KKGRC--LQDNFYA--------RGDGTLVY 250 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~---~~~~~--~~~~~~~--------~~~~~~~~ 250 (352)
+..+++|+ .+...++++++++|+|||.+++.+.++....... . ..+.. ....++. .......+
T Consensus 113 ~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (243)
T 3bkw_A 113 SSLALHYV--EDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKH 190 (243)
T ss_dssp EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEE
T ss_pred Eecccccc--chHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEE
Confidence 99999999 6788999999999999999999875431100000 0 00000 0000000 00022234
Q ss_pred ccCHHHHHHHHHhCCCceEEee
Q psy11741 251 FFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 251 ~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
.++.+++..+++++||+++...
T Consensus 191 ~~t~~~~~~~l~~aGF~~~~~~ 212 (243)
T 3bkw_A 191 HRTVGTTLNALIRSGFAIEHVE 212 (243)
T ss_dssp ECCHHHHHHHHHHTTCEEEEEE
T ss_pred eccHHHHHHHHHHcCCEeeeec
Confidence 4689999999999999998764
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=158.64 Aligned_cols=100 Identities=19% Similarity=0.321 Sum_probs=87.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||||||+|..+..|++ .+.+|+|+|+|+.|++.|+++ +++.+.++|+. .+++++++||+|++.
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~----~~~~v~gvD~s~~ml~~a~~~-----~~v~~~~~~~e----~~~~~~~sfD~v~~~ 106 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAE----FFERVHAVDPGEAQIRQALRH-----PRVTYAVAPAE----DTGLPPASVDVAIAA 106 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHT----TCSEEEEEESCHHHHHTCCCC-----TTEEEEECCTT----CCCCCSSCEEEEEEC
T ss_pred CCCEEEEcCCCCHHHHHHHH----hCCEEEEEeCcHHhhhhhhhc-----CCceeehhhhh----hhcccCCcccEEEEe
Confidence 57899999999999999998 566999999999999987653 57999999987 567789999999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
.++|+++ ...++++++++|||||+|++..++..
T Consensus 107 ~~~h~~~---~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 107 QAMHWFD---LDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp SCCTTCC---HHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred eehhHhh---HHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 9999883 56799999999999999998876654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=160.15 Aligned_cols=154 Identities=17% Similarity=0.272 Sum_probs=115.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||||||+|.++..+++.. ++.+++|+|+|+.+++.|+++....+ .++.+..+|+.. +++++++||+|+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~~~~~fD~v~ 110 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNN--PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS----LPFEDSSFDHIF 110 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHC--TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG----CCSCTTCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccccc----CCCCCCCeeEEE
Confidence 47899999999999999999975 67899999999999999999876543 579999999983 456678999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCch------hhHhhhcCccccCceeecCCCeeeeccCHHHHHH
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL------VQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKT 259 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
+..+++|+ .+...+++++.++|||||++++.+...... ....... ..............++..++..
T Consensus 111 ~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~ 183 (276)
T 3mgg_A 111 VCFVLEHL--QSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAW-----NCLIRVQAYMKGNSLVGRQIYP 183 (276)
T ss_dssp EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHH-----HHHHHHHHHTTCCTTGGGGHHH
T ss_pred Eechhhhc--CCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHH-----HHHHHHHHhcCCCcchHHHHHH
Confidence 99999999 667799999999999999999987543111 0000000 0000000000012245678999
Q ss_pred HHHhCCCceEEeee
Q psy11741 260 MFESAGFVEKQNLI 273 (352)
Q Consensus 260 ll~~~Gf~~~~~~~ 273 (352)
+++++||.++....
T Consensus 184 ~l~~aGf~~v~~~~ 197 (276)
T 3mgg_A 184 LLQESGFEKIRVEP 197 (276)
T ss_dssp HHHHTTCEEEEEEE
T ss_pred HHHHCCCCeEEEee
Confidence 99999999988754
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=157.91 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=113.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++.. +.+++|+|+|+.|++.|+++....+ .++.+.++|+.+ +++ +++||+|
T Consensus 36 ~~~~VLDiGcG~G~~~~~la~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~----~~~-~~~fD~V 107 (256)
T 1nkv_A 36 PGTRILDLGSGSGEMLCTWARDH---GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG----YVA-NEKCDVA 107 (256)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHT---CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT----CCC-SSCEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh----CCc-CCCCCEE
Confidence 47899999999999999999863 5689999999999999999876543 479999999974 344 6899999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhh-HhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQ-LRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
++..+++|+ .++..+|++++++|||||.+++.+........ ..+.. . ........+++.+++..++++
T Consensus 108 ~~~~~~~~~--~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~l~~ 176 (256)
T 1nkv_A 108 ACVGATWIA--GGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ------A---CGVSSTSDFLTLPGLVGAFDD 176 (256)
T ss_dssp EEESCGGGT--SSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHH------T---TTCSCGGGSCCHHHHHHHHHT
T ss_pred EECCChHhc--CCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHH------H---HhcccccccCCHHHHHHHHHH
Confidence 999999999 57899999999999999999997643211100 00000 0 001122356889999999999
Q ss_pred CCCceEEee
Q psy11741 264 AGFVEKQNL 272 (352)
Q Consensus 264 ~Gf~~~~~~ 272 (352)
+||.++...
T Consensus 177 aGf~~~~~~ 185 (256)
T 1nkv_A 177 LGYDVVEMV 185 (256)
T ss_dssp TTBCCCEEE
T ss_pred CCCeeEEEE
Confidence 999988753
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-19 Score=156.88 Aligned_cols=141 Identities=13% Similarity=0.277 Sum_probs=103.9
Q ss_pred hHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeC
Q psy11741 62 NEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDF 141 (352)
Q Consensus 62 ~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~ 141 (352)
.....++|+.++......+..-. ..+..+++.. ++.+|||||||+|.++..+++ .+.+|+|+|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~~--------~~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~ 87 (293)
T 3thr_A 24 DGEAARVWQLYIGDTRSRTAEYK----AWLLGLLRQH--------GCHRVLDVACGTGVDSIMLVE----EGFSVTSVDA 87 (293)
T ss_dssp TCHHHHHHHHHHTCCSCBCHHHH----HHHHHHHHHT--------TCCEEEETTCTTSHHHHHHHH----TTCEEEEEES
T ss_pred CchHHHHHHHHHhcCcchHHHHH----HHHHHHhccc--------CCCEEEEecCCCCHHHHHHHH----CCCeEEEEEC
Confidence 34556678877754332221112 2222233221 278999999999999999998 5669999999
Q ss_pred CHHHHHHHHhccccC-----CCceEEEEecCCCCCCCCC---CCCCcceEEEeh-hhhhccCh-----hHHHHHHHHHHH
Q psy11741 142 SENAVNILKEHEEYK-----PDRCHAFVCDVTSEDWNPP---FAPESLDIVLLI-FVLDAINP-----NKMQHVINQVYK 207 (352)
Q Consensus 142 s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~~---~~~~~fD~V~~~-~~l~~~~~-----~~~~~~l~~~~~ 207 (352)
|+.|++.|+++.... ..++.+..+|+.. ++ +++++||+|++. .+++|+.. +++..+++++++
T Consensus 88 s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~ 163 (293)
T 3thr_A 88 SDKMLKYALKERWNRRKEPAFDKWVIEEANWLT----LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 163 (293)
T ss_dssp CHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG----HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhcccccccceeeEeecChhh----CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHH
Confidence 999999998865221 1457788888763 33 457899999998 89999954 569999999999
Q ss_pred hcCCCEEEEEEeCCC
Q psy11741 208 YLKPGGMVLFRDYGR 222 (352)
Q Consensus 208 ~LkpgG~l~~~~~~~ 222 (352)
+|||||++++..++.
T Consensus 164 ~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 164 MVRPGGLLVIDHRNY 178 (293)
T ss_dssp TEEEEEEEEEEEECH
T ss_pred HcCCCeEEEEEeCCH
Confidence 999999999987653
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=149.11 Aligned_cols=141 Identities=21% Similarity=0.340 Sum_probs=109.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++. . +|+|+|+.+++.|+++ ++.+.++|+.. +++++++||+|++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~----~----~~vD~s~~~~~~a~~~------~~~~~~~d~~~----~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKI----K----IGVEPSERMAEIARKR------GVFVLKGTAEN----LPLKDESFDFALMV 109 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTC----C----EEEESCHHHHHHHHHT------TCEEEECBTTB----CCSCTTCEEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHH----H----hccCCCHHHHHHHHhc------CCEEEEccccc----CCCCCCCeeEEEEc
Confidence 67999999999999988876 3 9999999999999886 47899999873 45567899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|+ .++..+++++.++|+|||.+++.+++............ ... ........+++.+++..+++++||+
T Consensus 110 ~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~l~~~l~~~Gf~ 181 (219)
T 1vlm_A 110 TTICFV--DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKN-KEK-----SVFYKNARFFSTEELMDLMRKAGFE 181 (219)
T ss_dssp SCGGGS--SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHT-TTC------CCSTTCCCCCHHHHHHHHHHTTCE
T ss_pred chHhhc--cCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHH-hcC-----cchhcccccCCHHHHHHHHHHCCCe
Confidence 999999 67889999999999999999998876543221111110 000 0011223568999999999999999
Q ss_pred eEEeeee
Q psy11741 268 EKQNLID 274 (352)
Q Consensus 268 ~~~~~~~ 274 (352)
++.....
T Consensus 182 ~~~~~~~ 188 (219)
T 1vlm_A 182 EFKVVQT 188 (219)
T ss_dssp EEEEEEE
T ss_pred EEEEecc
Confidence 9887554
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-19 Score=149.67 Aligned_cols=141 Identities=21% Similarity=0.262 Sum_probs=108.6
Q ss_pred hhhhHHHHhhhccc----ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEe
Q psy11741 65 VAKNWDAFYNVHQN----RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCD 140 (352)
Q Consensus 65 ~~~yw~~~y~~~~~----~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD 140 (352)
..+||+.+|..... .++.....+...+...+ .++.+|||+|||+|.++..+++.. .. +++|+|
T Consensus 6 ~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~vLdiGcG~G~~~~~l~~~~--~~-~v~~~D 72 (215)
T 2pxx_A 6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPEL----------RPEDRILVLGCGNSALSYELFLGG--FP-NVTSVD 72 (215)
T ss_dssp CHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGC----------CTTCCEEEETCTTCSHHHHHHHTT--CC-CEEEEE
T ss_pred chhHHHHHhccCCCCCCcccccCHHHHHHHHHHhc----------CCCCeEEEECCCCcHHHHHHHHcC--CC-cEEEEe
Confidence 45789999986652 34444433333333332 237899999999999999999853 22 899999
Q ss_pred CCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccC-------------hhHHHHHHHHHHH
Q psy11741 141 FSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAIN-------------PNKMQHVINQVYK 207 (352)
Q Consensus 141 ~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~-------------~~~~~~~l~~~~~ 207 (352)
+|+.+++.|+++... ..++.+.++|+.+ +++++++||+|++..+++++. ..+...+++++.+
T Consensus 73 ~s~~~~~~a~~~~~~-~~~i~~~~~d~~~----~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (215)
T 2pxx_A 73 YSSVVVAAMQACYAH-VPQLRWETMDVRK----LDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSR 147 (215)
T ss_dssp SCHHHHHHHHHHTTT-CTTCEEEECCTTS----CCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccc-CCCcEEEEcchhc----CCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHH
Confidence 999999999998754 3578999999874 456678999999988887763 3577899999999
Q ss_pred hcCCCEEEEEEeCCCC
Q psy11741 208 YLKPGGMVLFRDYGRY 223 (352)
Q Consensus 208 ~LkpgG~l~~~~~~~~ 223 (352)
+|+|||.+++.+++.+
T Consensus 148 ~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 148 VLVPGGRFISMTSAAP 163 (215)
T ss_dssp HEEEEEEEEEEESCCH
T ss_pred hCcCCCEEEEEeCCCc
Confidence 9999999999887653
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-19 Score=157.49 Aligned_cols=153 Identities=23% Similarity=0.344 Sum_probs=115.6
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
.++.+|||||||+|.++..+++. .+.+|+|+|+|+.+++.|+++....+ .++.+..+|+. .+++++++||+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~fD~ 132 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATA---RDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAM----DLPFEDASFDA 132 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHH---SCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT----SCCSCTTCEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccc----cCCCCCCCccE
Confidence 34789999999999999999886 35699999999999999998876533 46999999997 45566789999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
|++..+++|+ .+...+++++.++|||||.+++.++........... ..+ ..+... .....+++.+++..++++
T Consensus 133 v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~--~~~-~~~~~~--~~~~~~~~~~~~~~~l~~ 205 (273)
T 3bus_A 133 VWALESLHHM--PDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKK--EAV-DAFRAG--GGVLSLGGIDEYESDVRQ 205 (273)
T ss_dssp EEEESCTTTS--SCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHH--HHH-HHHHHH--HTCCCCCCHHHHHHHHHH
T ss_pred EEEechhhhC--CCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHH--HHH-HHHHhh--cCccCCCCHHHHHHHHHH
Confidence 9999999999 667899999999999999999987543211000000 000 000000 012245889999999999
Q ss_pred CCCceEEee
Q psy11741 264 AGFVEKQNL 272 (352)
Q Consensus 264 ~Gf~~~~~~ 272 (352)
+||.++...
T Consensus 206 aGf~~~~~~ 214 (273)
T 3bus_A 206 AELVVTSTV 214 (273)
T ss_dssp TTCEEEEEE
T ss_pred cCCeEEEEE
Confidence 999998764
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-19 Score=153.68 Aligned_cols=102 Identities=14% Similarity=0.266 Sum_probs=87.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe-
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL- 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 186 (352)
+.+|||+|||+|.++..+++.. .+++|+|+|+.|++.|+++. .++.+.++|+.+ ++. +++||+|+|
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~----~~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~----~~~-~~~~D~v~~~ 107 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEF----GDTAGLELSEDMLTHARKRL----PDATLHQGDMRD----FRL-GRKFSAVVSM 107 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHH----SEEEEEESCHHHHHHHHHHC----TTCEEEECCTTT----CCC-SSCEEEEEEC
T ss_pred CCeEEEecccCCHHHHHHHHhC----CcEEEEeCCHHHHHHHHHhC----CCCEEEECCHHH----ccc-CCCCcEEEEc
Confidence 7899999999999999999854 38999999999999999875 458999999874 333 678999996
Q ss_pred hhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 187 IFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 187 ~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
..+++|+ ++++...++++++++|+|||.+++.++..
T Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 108 FSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 4489988 45788999999999999999999986554
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.6e-20 Score=159.83 Aligned_cols=144 Identities=15% Similarity=0.247 Sum_probs=110.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++ ++.+|+|+|+|+.|++.|+++. ++.+.++|+. .+++++++||+|++
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~d~~----~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALAN----QGLFVYAVEPSIVMRQQAVVHP-----QVEWFTGYAE----NLALPDKSVDGVIS 100 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHT----TTCEEEEECSCHHHHHSSCCCT-----TEEEECCCTT----SCCSCTTCBSEEEE
T ss_pred CCCEEEEEcCcccHHHHHHHh----CCCEEEEEeCCHHHHHHHHhcc-----CCEEEECchh----hCCCCCCCEeEEEE
Confidence 378999999999999999998 7789999999999999887764 7999999997 45567889999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
..+++|+ .++..++++++++|| ||++++.++.......... ..............+.+.+++. +++++||
T Consensus 101 ~~~l~~~--~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF 170 (261)
T 3ege_A 101 ILAIHHF--SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWL------YDYFPFLWEDALRFLPLDEQIN-LLQENTK 170 (261)
T ss_dssp ESCGGGC--SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGG------GGTCHHHHHHHHTSCCHHHHHH-HHHHHHC
T ss_pred cchHhhc--cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHH------HHHHHHHhhhhhhhCCCHHHHH-HHHHcCC
Confidence 9999999 788999999999999 9988887765432110000 0000000011122356778888 9999999
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
..+....
T Consensus 171 ~~v~~~~ 177 (261)
T 3ege_A 171 RRVEAIP 177 (261)
T ss_dssp SEEEEEE
T ss_pred CceeEEE
Confidence 9887643
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-19 Score=150.98 Aligned_cols=151 Identities=17% Similarity=0.296 Sum_probs=111.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC------CceEEEEecCCCCCCCCCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP------DRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
+.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.|+++....+ .++.+.++|+. ..+..+++|
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~----~~~~~~~~f 103 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDK--SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV----YRDKRFSGY 103 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTST--TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS----SCCGGGTTC
T ss_pred CCEEEEecCCCCHHHHHHHhcC--CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc----ccccccCCC
Confidence 7799999999999999999864 55799999999999999998865422 27999999985 344556899
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHH---
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVK--- 258 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 258 (352)
|+|++..+++|++.++...+++++.++|||||+++........... .. +.. .......+...++.+++.
T Consensus 104 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~-----~~-~~~--~~~~~~~~~~~~~~~~l~~~~ 175 (219)
T 3jwg_A 104 DAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHY-----GN-LFE--GNLRHRDHRFEWTRKEFQTWA 175 (219)
T ss_dssp SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCC-----CC-T-------GGGCCTTSBCHHHHHHHH
T ss_pred CEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhh-----cc-cCc--ccccccCceeeecHHHHHHHH
Confidence 9999999999997777799999999999999976665332111000 00 000 000112233457899998
Q ss_pred -HHHHhCCCceEEee
Q psy11741 259 -TMFESAGFVEKQNL 272 (352)
Q Consensus 259 -~ll~~~Gf~~~~~~ 272 (352)
.+++++||++....
T Consensus 176 ~~l~~~~Gf~v~~~~ 190 (219)
T 3jwg_A 176 VKVAEKYGYSVRFLQ 190 (219)
T ss_dssp HHHHHHHTEEEEEEE
T ss_pred HHHHHHCCcEEEEEe
Confidence 88999999876543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-19 Score=158.16 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=115.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||||||+|..+..++.... ++.+|+|+|+|+.+++.|+++....+ .+++++++|+.+ ++++ ++||+|
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~-~~fD~v 191 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSAC-PGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK----LDTR-EGYDLL 191 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTC-TTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG----CCCC-SCEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc----CCcc-CCeEEE
Confidence 478999999999999999863221 78899999999999999999886543 349999999984 4444 899999
Q ss_pred Eehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCc-cccC-------ceeecC-CCeeeeccCH
Q psy11741 185 LLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGR-CLQD-------NFYARG-DGTLVYFFTR 254 (352)
Q Consensus 185 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~-~~~~~~~~~~ 254 (352)
++..+++|+ ++.....++++++++|||||++++.++.............. .... ..+... ......+++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
T 3ocj_A 192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTH 271 (305)
T ss_dssp ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCH
T ss_pred EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCH
Confidence 999999998 45555678999999999999999988654322111000000 0000 000000 1122245899
Q ss_pred HHHHHHHHhCCCceEEee
Q psy11741 255 EEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 255 ~~~~~ll~~~Gf~~~~~~ 272 (352)
+++..+++++||+++...
T Consensus 272 ~~~~~~l~~aGF~~v~~~ 289 (305)
T 3ocj_A 272 AQTRAQLEEAGFTDLRFE 289 (305)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEE
Confidence 999999999999998875
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=148.89 Aligned_cols=153 Identities=26% Similarity=0.284 Sum_probs=114.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. ..+..+|+... ..++++++||+|++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~----~~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~--~~~~~~~~fD~v~~ 99 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN----GTRVSGIEAFPEAAEQAKEKL------DHVVLGDIETM--DMPYEEEQFDCVIF 99 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT----TCEEEEEESSHHHHHHHHTTS------SEEEESCTTTC--CCCSCTTCEEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHHhC------CcEEEcchhhc--CCCCCCCccCEEEE
Confidence 3789999999999999999884 479999999999999998875 26788888742 24556789999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
..+++|+ .+...+++++.++|+|||.+++..++..........................+..+++.+++.++++++||
T Consensus 100 ~~~l~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 177 (230)
T 3cc8_A 100 GDVLEHL--FDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGY 177 (230)
T ss_dssp ESCGGGS--SCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTE
T ss_pred CChhhhc--CCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCC
Confidence 9999999 56789999999999999999998876544322211100000000000112234467899999999999999
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
+++....
T Consensus 178 ~~~~~~~ 184 (230)
T 3cc8_A 178 SISKVDR 184 (230)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 9987654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=154.68 Aligned_cols=157 Identities=16% Similarity=0.101 Sum_probs=117.0
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
.++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++....+ .++.+..+|+.+ + +++||+
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~---~~~fD~ 140 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEY---DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE----F---DEPVDR 140 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH---CCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG----C---CCCCSE
T ss_pred CCcCEEEEeeccCcHHHHHHHHhC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH----c---CCCccE
Confidence 457899999999999999999964 3689999999999999999876543 479999999874 2 689999
Q ss_pred EEehhhhhcc-------ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccc-----cCceeecCCCeeeec
Q psy11741 184 VLLIFVLDAI-------NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCL-----QDNFYARGDGTLVYF 251 (352)
Q Consensus 184 V~~~~~l~~~-------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 251 (352)
|++..+++|+ +.++...+++++.++|||||++++.++................ ...+.....-+....
T Consensus 141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 220 (302)
T 3hem_A 141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRL 220 (302)
T ss_dssp EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCC
T ss_pred EEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCC
Confidence 9999999999 4467899999999999999999998876554332211100000 000000000011134
Q ss_pred cCHHHHHHHHHhCCCceEEee
Q psy11741 252 FTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 252 ~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
.+.+++..+++++||.++...
T Consensus 221 ~s~~~~~~~l~~aGf~~~~~~ 241 (302)
T 3hem_A 221 PRISQVDYYSSNAGWKVERYH 241 (302)
T ss_dssp CCHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHHHHHHHhCCcEEEEEE
Confidence 789999999999999988764
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-19 Score=154.17 Aligned_cols=147 Identities=21% Similarity=0.328 Sum_probs=112.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|+++....+ .++.++++|+. .+++++++||+|
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~----~~~~~~~~fD~i 118 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGH---VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMD----DLPFRNEELDLI 118 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTT---CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT----SCCCCTTCEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhc---cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChh----hCCCCCCCEEEE
Confidence 4789999999999999999985 56699999999999999999876543 56999999997 445667899999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..+++|+ ++..+++++.++|||||++++.++.......... .... +.. ....+.+.+++.++++++
T Consensus 119 ~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-----~~~~-~~~---~~~~~~~~~~~~~~l~~a 186 (267)
T 3kkz_A 119 WSEGAIYNI---GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAE-----INDF-WMD---AYPEIDTIPNQVAKIHKA 186 (267)
T ss_dssp EESSCGGGT---CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH-----HHHH-HHH---HCTTCEEHHHHHHHHHHT
T ss_pred EEcCCceec---CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHH-----HHHH-HHH---hCCCCCCHHHHHHHHHHC
Confidence 999999998 4688999999999999999998753211000000 0000 000 001346789999999999
Q ss_pred CCceEEee
Q psy11741 265 GFVEKQNL 272 (352)
Q Consensus 265 Gf~~~~~~ 272 (352)
||.++...
T Consensus 187 Gf~~v~~~ 194 (267)
T 3kkz_A 187 GYLPVATF 194 (267)
T ss_dssp TEEEEEEE
T ss_pred CCEEEEEE
Confidence 99998764
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-19 Score=157.16 Aligned_cols=161 Identities=18% Similarity=0.274 Sum_probs=112.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC-------ceEEEEecCCCCCC--C--CCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD-------RCHAFVCDVTSEDW--N--PPF 176 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~~~~~--~--~~~ 176 (352)
+.+|||||||+|..+..++.. .+.+|+|+|+|+.|++.|+++....+. ++.+.+.|+..... . .++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~---~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYG---EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCeEEEEecCCcHhHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 689999999999877766653 456899999999999999998754322 26788888854321 1 124
Q ss_pred CCCcceEEEehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhh-----cCc-cccCce---------
Q psy11741 177 APESLDIVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFK-----KGR-CLQDNF--------- 240 (352)
Q Consensus 177 ~~~~fD~V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-----~~~-~~~~~~--------- 240 (352)
++++||+|+|.+++|++ +.++...++++++++|||||+|++.+++.......... .+. .....+
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 205 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADD 205 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETT
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccc
Confidence 56899999999999875 44567899999999999999999988764332211000 000 000000
Q ss_pred ----e-ecC--CCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 241 ----Y-ARG--DGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 241 ----~-~~~--~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
+ ..+ .....++...+++..+++++||+++..
T Consensus 206 ~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~ 243 (302)
T 2vdw_A 206 RIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDN 243 (302)
T ss_dssp EEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEE
T ss_pred ccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEe
Confidence 1 111 122335788899999999999999876
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-19 Score=155.85 Aligned_cols=158 Identities=14% Similarity=0.120 Sum_probs=112.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCC-CCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFA-PESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|+++.. ..++.++++|+.+.....++. ...||+|+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~----~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~ 129 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFF----PRVIGLDVSKSALEIAAKENT--AANISYRLLDGLVPEQAAQIHSEIGDANIY 129 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHS----SCEEEEESCHHHHHHHHHHSC--CTTEEEEECCTTCHHHHHHHHHHHCSCEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHhC----CCEEEEECCHHHHHHHHHhCc--ccCceEEECcccccccccccccccCccEEE
Confidence 47899999999999999999854 389999999999999998873 347999999987421100111 12489999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhc---CccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK---GRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
+..+++|+++++...++++++++|||||++++.++.......+.... +............+.....++.+++..++
T Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 208 (245)
T 3ggd_A 130 MRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF- 208 (245)
T ss_dssp EESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC-
T ss_pred EcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh-
Confidence 99999999877999999999999999999998887765432211100 00000000000111122347899999999
Q ss_pred hCCCceEEee
Q psy11741 263 SAGFVEKQNL 272 (352)
Q Consensus 263 ~~Gf~~~~~~ 272 (352)
+||+++...
T Consensus 209 -aGf~~~~~~ 217 (245)
T 3ggd_A 209 -PDFEILSQG 217 (245)
T ss_dssp -TTEEEEEEE
T ss_pred -CCCEEEecc
Confidence 999998764
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-18 Score=142.35 Aligned_cols=139 Identities=19% Similarity=0.297 Sum_probs=110.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..+++ .+.+++|+|+|+.+++.|+++....+ .++.+..+|+.+ +++ +++||+|++
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~-~~~~D~v~~ 103 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAA----NGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN----LTF-DRQYDFILS 103 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG----CCC-CCCEEEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh----CCC-CCCceEEEE
Confidence 67999999999999999998 46699999999999999998876433 479999999874 344 688999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
..+++|+++++...+++++.++|+|||.+++.+...... +. ........++.+++.++++. |
T Consensus 104 ~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~---------------~~-~~~~~~~~~~~~~l~~~~~~--f 165 (199)
T 2xvm_A 104 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTAD---------------YP-CTVGFPFAFKEGELRRYYEG--W 165 (199)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSS---------------SC-CCSCCSCCBCTTHHHHHTTT--S
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCC---------------cC-CCCCCCCccCHHHHHHHhcC--C
Confidence 999999977799999999999999999987755322110 00 01122245788999999986 8
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
+++....
T Consensus 166 ~~~~~~~ 172 (199)
T 2xvm_A 166 ERVKYNE 172 (199)
T ss_dssp EEEEEEC
T ss_pred eEEEecc
Confidence 8887643
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=151.30 Aligned_cols=143 Identities=21% Similarity=0.365 Sum_probs=111.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++.. +. +|+|+|+|+.+++.|+++....+ .++.+.++|+. .+++++++||+|
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~--~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~fD~v 118 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYV--KG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD----NLPFQNEELDLI 118 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHC--CS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT----SCSSCTTCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHhC--CC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChh----hCCCCCCCEEEE
Confidence 47799999999999999999975 33 99999999999999999876543 45999999996 456668899999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCc---hhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHH
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYD---LVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 261 (352)
++..+++|+ +...+++++.++|||||++++.++.... ..... ..+... ...+.+.+++..++
T Consensus 119 ~~~~~l~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~~l 183 (257)
T 3f4k_A 119 WSEGAIYNI---GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIE--------DFWMDA----YPEISVIPTCIDKM 183 (257)
T ss_dssp EEESCSCCC---CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHH--------HHHHHH----CTTCCBHHHHHHHH
T ss_pred EecChHhhc---CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHH--------HHHHHh----CCCCCCHHHHHHHH
Confidence 999999998 4678999999999999999998743111 00000 000000 01146899999999
Q ss_pred HhCCCceEEe
Q psy11741 262 ESAGFVEKQN 271 (352)
Q Consensus 262 ~~~Gf~~~~~ 271 (352)
+++||.++..
T Consensus 184 ~~aGf~~v~~ 193 (257)
T 3f4k_A 184 ERAGYTPTAH 193 (257)
T ss_dssp HHTTEEEEEE
T ss_pred HHCCCeEEEE
Confidence 9999999875
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-18 Score=148.08 Aligned_cols=154 Identities=22% Similarity=0.362 Sum_probs=114.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ . .+++|+|+|+.|++.|+++....+.++.+.++|+.+ ++++ ++||+|++.
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~----~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~-~~fD~v~~~ 103 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLAD----H-YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE----LELP-EPVDAITIL 103 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTT----T-SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG----CCCS-SCEEEEEEC
T ss_pred CCeEEEecCCCCHHHHHHhh----C-CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh----cCCC-CCcCEEEEe
Confidence 67999999999999998887 4 589999999999999999876655679999999874 3333 789999998
Q ss_pred h-hhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCc----------cccCc--------------ee
Q psy11741 188 F-VLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGR----------CLQDN--------------FY 241 (352)
Q Consensus 188 ~-~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~----------~~~~~--------------~~ 241 (352)
. +++|+ +.++...+++++.++|+|||.+++...++...... .... ..+.. ++
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (243)
T 3d2l_A 104 CDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETL--FNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFF 181 (243)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTT--TSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEE
T ss_pred CCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHh--cCCcceeEECCCcEEEEEeecCccccEEEEEEEEE
Confidence 6 89988 66788999999999999999999976543221110 0000 00000 00
Q ss_pred ec-CC--------CeeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 242 AR-GD--------GTLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 242 ~~-~~--------~~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
.. .. ..+..+++.+++.++++++||+++....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 222 (243)
T 3d2l_A 182 IEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTG 222 (243)
T ss_dssp EECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEec
Confidence 00 11 1233578999999999999999988743
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=156.97 Aligned_cols=147 Identities=14% Similarity=0.172 Sum_probs=115.3
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
..++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|+++....+ .++.+.++|+. .+++++++||
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~----~~~~~~~~fD 187 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF---GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML----DTPFDKGAVT 187 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT----SCCCCTTCEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh----cCCCCCCCEe
Confidence 3457899999999999999999853 5689999999999999999877544 47999999997 4456678999
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchh-----hHhhhcCccccCceeecCCCeeeeccCHHHH
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV-----QLRFKKGRCLQDNFYARGDGTLVYFFTREEV 257 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (352)
+|++..+++|++ +..+++++.++|||||++++.+....... ....... . ....+++.+++
T Consensus 188 ~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-----~-------~~~~~~s~~~~ 252 (312)
T 3vc1_A 188 ASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINA-----H-------FECNIHSRREY 252 (312)
T ss_dssp EEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHH-----H-------HTCCCCBHHHH
T ss_pred EEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHh-----h-------hcCCCCCHHHH
Confidence 999999999993 88999999999999999999875433211 0000000 0 00125789999
Q ss_pred HHHHHhCCCceEEeee
Q psy11741 258 KTMFESAGFVEKQNLI 273 (352)
Q Consensus 258 ~~ll~~~Gf~~~~~~~ 273 (352)
..+++++||+++....
T Consensus 253 ~~~l~~aGf~~~~~~~ 268 (312)
T 3vc1_A 253 LRAMADNRLVPHTIVD 268 (312)
T ss_dssp HHHHHTTTEEEEEEEE
T ss_pred HHHHHHCCCEEEEEEe
Confidence 9999999999987743
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=154.65 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=115.5
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
.++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++....+ .++.+..+|+.+ ++ ++||+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~---~~fD~ 132 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKY---DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ----FD---EPVDR 132 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG----CC---CCCSE
T ss_pred CCcCEEEEECCcccHHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh----CC---CCeeE
Confidence 357899999999999999999654 4499999999999999999876432 579999999863 32 78999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccc------cCceeecCCCeeeeccCHHHH
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCL------QDNFYARGDGTLVYFFTREEV 257 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 257 (352)
|++..+++|++++++..+++++.++|||||.+++.++.......... .+... ...+.....-....+++.+++
T Consensus 133 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 211 (287)
T 1kpg_A 133 IVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHE-RGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV 211 (287)
T ss_dssp EEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTT-TTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred EEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCcccccc-ccccccccccchhhhHHheeCCCCCCCCHHHH
Confidence 99999999998778999999999999999999998876543222100 00000 000000000001134689999
Q ss_pred HHHHHhCCCceEEee
Q psy11741 258 KTMFESAGFVEKQNL 272 (352)
Q Consensus 258 ~~ll~~~Gf~~~~~~ 272 (352)
.++++++||+++...
T Consensus 212 ~~~l~~aGf~~~~~~ 226 (287)
T 1kpg_A 212 QECASANGFTVTRVQ 226 (287)
T ss_dssp HHHHHTTTCEEEEEE
T ss_pred HHHHHhCCcEEEEEE
Confidence 999999999998764
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-19 Score=156.86 Aligned_cols=159 Identities=15% Similarity=0.120 Sum_probs=106.5
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcC--CCCeE--EEEEeCCHHHHHHHHhccccC--CCceEEE--EecCCCCC--CCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCK--NDNVF--VYGCDFSENAVNILKEHEEYK--PDRCHAF--VCDVTSED--WNPP 175 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~--~~~~~--v~gvD~s~~~l~~a~~~~~~~--~~~v~~~--~~d~~~~~--~~~~ 175 (352)
.++.+|||||||+|.++..++..+. .++.. ++|+|+|+.|++.|+++.... ..++.+. .+++.+.. +..+
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 3467999999999987654433221 14554 499999999999999886532 2345544 34432100 0012
Q ss_pred CCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCch-hhHhhhcCccccCceeecCCCeeeeccCH
Q psy11741 176 FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL-VQLRFKKGRCLQDNFYARGDGTLVYFFTR 254 (352)
Q Consensus 176 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (352)
+++++||+|++..++||+ +++..+|++++++|||||++++...+.... ..+.......+ ..+.+..+++.
T Consensus 131 ~~~~~fD~V~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 201 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRF-------PQDDLCQYITS 201 (292)
T ss_dssp TCCCCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGS-------CCCTTCCCCCH
T ss_pred cCCCceeEEEEeeeeeec--CCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhc-------cCCCcccCCCH
Confidence 457899999999999999 788999999999999999999976554221 11100000000 11123456889
Q ss_pred HHHHHHHHhCCCceEEeee
Q psy11741 255 EEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 255 ~~~~~ll~~~Gf~~~~~~~ 273 (352)
+++.++++++||.++....
T Consensus 202 ~~~~~~l~~aGf~~~~~~~ 220 (292)
T 2aot_A 202 DDLTQMLDNLGLKYECYDL 220 (292)
T ss_dssp HHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHCCCceEEEEe
Confidence 9999999999999876544
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=160.51 Aligned_cols=159 Identities=15% Similarity=0.190 Sum_probs=117.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
..+|||||||+|.++..+++.+ ++.+++++|+ +.+++.|+++....+ .+++++.+|+.+.. +|++ ++||+|+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~p-~~~D~v~ 253 (363)
T 3dp7_A 180 PKRLLDIGGNTGKWATQCVQYN--KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRD--VPFP-TGFDAVW 253 (363)
T ss_dssp CSEEEEESCTTCHHHHHHHHHS--TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSS--CCCC-CCCSEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhC--CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccC--CCCC-CCcCEEE
Confidence 6799999999999999999987 8889999999 999999999876543 57999999997531 1343 7899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..++|++++++...+|++++++|+|||+|++.+...+............................++.+++.++++++|
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AG 333 (363)
T 3dp7_A 254 MSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAG 333 (363)
T ss_dssp EESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTT
T ss_pred EechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcC
Confidence 99999999888889999999999999999999876543211100000000000000000111123468999999999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|+++...
T Consensus 334 f~~v~~~ 340 (363)
T 3dp7_A 334 LEVEEIQ 340 (363)
T ss_dssp EEESCCC
T ss_pred CeEEEEE
Confidence 9998764
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-18 Score=144.36 Aligned_cols=106 Identities=24% Similarity=0.416 Sum_probs=91.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++....+.++.+.++|+.+ +++++++||+|++.
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~v~~~ 110 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDY----GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK----LSFEDKTFDYVIFI 110 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS----CCSCTTCEEEEEEE
T ss_pred CCeEEEEeccCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc----CCCCCCcEEEEEEc
Confidence 679999999999999999884 3499999999999999999876655789999999874 44557899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.++++....+...++++++++|+|||.+++.+++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 111 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 9866555588899999999999999999998765
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.5e-19 Score=157.49 Aligned_cols=156 Identities=15% Similarity=0.310 Sum_probs=111.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-----------------------------
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----------------------------- 157 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----------------------------- 157 (352)
++.+|||||||+|.++..++..+ ++.+|+|+|+|+.|++.|+++.....
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~--~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKW--GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHT--CCSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 37899999999999999999987 67799999999999999998865321
Q ss_pred ------------------------------CceEEEEecCCCCCCC-CCCCCCcceEEEehhhhhcc----ChhHHHHHH
Q psy11741 158 ------------------------------DRCHAFVCDVTSEDWN-PPFAPESLDIVLLIFVLDAI----NPNKMQHVI 202 (352)
Q Consensus 158 ------------------------------~~v~~~~~d~~~~~~~-~~~~~~~fD~V~~~~~l~~~----~~~~~~~~l 202 (352)
.++.|.++|+...... +++.+++||+|+|..+++|+ +.+++..++
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 4799999998743200 12357899999999999777 455889999
Q ss_pred HHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh--CCCceEEee
Q psy11741 203 NQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES--AGFVEKQNL 272 (352)
Q Consensus 203 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~Gf~~~~~~ 272 (352)
++++++|+|||+|++...... . +.....+....+.. .....+.++++..+|.+ +||+.++..
T Consensus 204 ~~~~~~LkpGG~lil~~~~~~---~--y~~~~~~~~~~~~~---~~~~~~~p~~~~~~L~~~~~GF~~~~~~ 267 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEPQPWS---S--YGKRKTLTETIYKN---YYRIQLKPEQFSSYLTSPDVGFSSYELV 267 (292)
T ss_dssp HHHHHHEEEEEEEEEECCCHH---H--HHTTTTSCHHHHHH---HHHCCCCGGGHHHHHTSTTTCCCEEEEC
T ss_pred HHHHHHhCCCcEEEEecCCch---h--hhhhhcccHHHHhh---hhcEEEcHHHHHHHHHhcCCCceEEEEe
Confidence 999999999999999643211 1 11110011000000 00112457889999998 999887764
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=141.15 Aligned_cols=129 Identities=22% Similarity=0.320 Sum_probs=105.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++ ..++.+..+| . ++++++||+|++.
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~----~~~v~~~~~d-~------~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEF----ATKLYCIDINVIALKEVKEK----FDSVITLSDP-K------EIPDNSVDFILFA 82 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTT----EEEEEEECSCHHHHHHHHHH----CTTSEEESSG-G------GSCTTCEEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhh----cCeEEEEeCCHHHHHHHHHh----CCCcEEEeCC-C------CCCCCceEEEEEc
Confidence 779999999999999999985 34999999999999999987 3568899888 2 3457899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|+ .+...+++++.++|+|||.+++.++...... ........++.+++..+++ ||+
T Consensus 83 ~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~--Gf~ 141 (170)
T 3i9f_A 83 NSFHDM--DDKQHVISEVKRILKDDGRVIIIDWRKENTG-----------------IGPPLSIRMDEKDYMGWFS--NFV 141 (170)
T ss_dssp SCSTTC--SCHHHHHHHHHHHEEEEEEEEEEEECSSCCS-----------------SSSCGGGCCCHHHHHHHTT--TEE
T ss_pred cchhcc--cCHHHHHHHHHHhcCCCCEEEEEEcCccccc-----------------cCchHhhhcCHHHHHHHHh--CcE
Confidence 999999 6788999999999999999999876543210 0111223478999999999 999
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
++...
T Consensus 142 ~~~~~ 146 (170)
T 3i9f_A 142 VEKRF 146 (170)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 88764
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-18 Score=153.20 Aligned_cols=156 Identities=17% Similarity=0.187 Sum_probs=116.2
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|+++....+ .++.+..+|+.+ + +++||+
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~---~~~fD~ 158 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERF---DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED----F---AEPVDR 158 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG----C---CCCCSE
T ss_pred CCcCEEEEEcccchHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH----C---CCCcCE
Confidence 457899999999999999999863 5699999999999999999876543 468999999864 2 278999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCcc------ccCceeecCCCeeeeccCHHHH
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRC------LQDNFYARGDGTLVYFFTREEV 257 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 257 (352)
|++..+++|++.+++..+++++.++|||||.+++.++........... +.. ....+.....-....+++.+++
T Consensus 159 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 237 (318)
T 2fk8_A 159 IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAAR-GKKLSFETARFIKFIVTEIFPGGRLPSTEMM 237 (318)
T ss_dssp EEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTT-CHHHHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred EEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhc-cccccccccchhhHHHHhcCCCCcCCCHHHH
Confidence 999999999987889999999999999999999988765543221000 000 0000000000001134689999
Q ss_pred HHHHHhCCCceEEee
Q psy11741 258 KTMFESAGFVEKQNL 272 (352)
Q Consensus 258 ~~ll~~~Gf~~~~~~ 272 (352)
..+++++||+++...
T Consensus 238 ~~~l~~aGf~~~~~~ 252 (318)
T 2fk8_A 238 VEHGEKAGFTVPEPL 252 (318)
T ss_dssp HHHHHHTTCBCCCCE
T ss_pred HHHHHhCCCEEEEEE
Confidence 999999999988753
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-18 Score=144.15 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=91.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|+++.... .++.+.++|+.+. + ++++||+|++
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~----~-~~~~fD~v~~ 120 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAP----HCKRLTVIDVMPRAIGRACQRTKRW-SHISWAATDILQF----S-TAELFDLIVV 120 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGG----GEEEEEEEESCHHHHHHHHHHTTTC-SSEEEEECCTTTC----C-CSCCEEEEEE
T ss_pred CCCcEEEEcCCCCHHHHHHHH----cCCEEEEEECCHHHHHHHHHhcccC-CCeEEEEcchhhC----C-CCCCccEEEE
Confidence 367999999999999999988 4569999999999999999987654 4799999999853 3 4789999999
Q ss_pred hhhhhccC-hhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAIN-PNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
..+++|++ ++....+++++.++|||||.+++.+..
T Consensus 121 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 121 AEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp ESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 99999995 466678999999999999999997654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=145.57 Aligned_cols=135 Identities=19% Similarity=0.271 Sum_probs=103.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+ +. +++|+|+|+.|++.|+++. .++.+.++|+. .+++++++||+|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-------~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~----~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-------PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGE----ALPFPGESFDVVL 100 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-------CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTT----SCCSCSSCEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC-------CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccc----cCCCCCCcEEEEE
Confidence 3789999999999988776 23 8999999999999999886 46889999987 4556678999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+++|+ .++..+++++.++|||||.+++.+++................ .....+..+++.+++.++++ |
T Consensus 101 ~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 101 LFTTLEFV--EDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKG-----VLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp EESCTTTC--SCHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTT-----CTTGGGCCCCCHHHHHHHHC--S
T ss_pred EcChhhhc--CCHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhcc-----CccccccccCCHHHHHHHhc--C
Confidence 99999999 678899999999999999999998776533211110000000 01112446789999999998 7
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=138.14 Aligned_cols=127 Identities=14% Similarity=0.182 Sum_probs=108.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+++|+|+|+.+++.++++. .++.+.++|+.. +++++++||+|++.
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~----~~~~v~~~D~~~~~~~~a~~~~----~~~~~~~~d~~~----~~~~~~~~D~i~~~ 114 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSK----QGHDVLGTDLDPILIDYAKQDF----PEARWVVGDLSV----DQISETDFDLIVSA 114 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHH----TTCEEEEEESCHHHHHHHHHHC----TTSEEEECCTTT----SCCCCCCEEEEEEC
T ss_pred CCeEEEECCCCCHHHHHHHH----CCCcEEEEcCCHHHHHHHHHhC----CCCcEEEccccc----CCCCCCceeEEEEC
Confidence 78999999999999999988 4669999999999999999876 348899999874 34557899999998
Q ss_pred -hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 188 -FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 188 -~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
.++++++.++...+++.+.++|+|||.+++...... .++.+++..+++++||
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~---------------------------~~~~~~~~~~l~~~Gf 167 (195)
T 3cgg_A 115 GNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR---------------------------GWVFGDFLEVAERVGL 167 (195)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS---------------------------SCCHHHHHHHHHHHTE
T ss_pred CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC---------------------------CcCHHHHHHHHHHcCC
Confidence 688888878889999999999999999999754321 1678899999999999
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
.++....
T Consensus 168 ~~~~~~~ 174 (195)
T 3cgg_A 168 ELENAFE 174 (195)
T ss_dssp EEEEEES
T ss_pred EEeeeec
Confidence 9887643
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=151.35 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=114.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+..+|||+|||+|..+..+++.+ ++.+++++|+ +.+++.|+++....+ .++++..+|+.+ ..| . +||+|
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~p--~-~~D~v 239 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAH--EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD---PLP--A-GAGGY 239 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHC--TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS---CCC--C-SCSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHC--CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC---CCC--C-CCcEE
Confidence 36799999999999999999987 7889999999 999999998876533 679999999873 222 3 79999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++.+++|+++.++...+|++++++|+|||++++.+...+.. .. ........... .....++.+++..+++++
T Consensus 240 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~----~~~~d~~~~~~---~~~~~~t~~e~~~ll~~a 311 (332)
T 3i53_A 240 VLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA----GTGMDLRMLTY---FGGKERSLAELGELAAQA 311 (332)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C----CHHHHHHHHHH---HSCCCCCHHHHHHHHHHT
T ss_pred EEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc----cHHHHHHHHhh---CCCCCCCHHHHHHHHHHC
Confidence 99999999977778999999999999999999988654432 00 00000000000 011247899999999999
Q ss_pred CCceEEee
Q psy11741 265 GFVEKQNL 272 (352)
Q Consensus 265 Gf~~~~~~ 272 (352)
||++++..
T Consensus 312 Gf~~~~~~ 319 (332)
T 3i53_A 312 GLAVRAAH 319 (332)
T ss_dssp TEEEEEEE
T ss_pred CCEEEEEE
Confidence 99998764
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-18 Score=149.18 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=114.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH------HHHHHHhccccCC--CceEEEEec-CCCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN------AVNILKEHEEYKP--DRCHAFVCD-VTSEDWNPPFA 177 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~------~l~~a~~~~~~~~--~~v~~~~~d-~~~~~~~~~~~ 177 (352)
++.+|||||||+|.++..+++..+ +..+|+|+|+|+. +++.|+++....+ .++.+..+| +... .++++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g-~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 119 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVG-SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD--LGPIA 119 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHC-TTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC--CGGGT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc--cCCCC
Confidence 378999999999999999998753 4479999999997 9999998876543 579999998 4321 45566
Q ss_pred CCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhH---hhh--cCccccCceeecCCCeeeecc
Q psy11741 178 PESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL---RFK--KGRCLQDNFYARGDGTLVYFF 252 (352)
Q Consensus 178 ~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~ 252 (352)
+++||+|++..+++|+ .+...+++.+.++++|||.+++.++........ ... ...................++
T Consensus 120 ~~~fD~v~~~~~l~~~--~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (275)
T 3bkx_A 120 DQHFDRVVLAHSLWYF--ASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLI 197 (275)
T ss_dssp TCCCSEEEEESCGGGS--SCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCC
T ss_pred CCCEEEEEEccchhhC--CCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccC
Confidence 7899999999999999 444567777778888899999988665321100 000 000000000011122333568
Q ss_pred CHHHHHHHHHhCCCceEEeee
Q psy11741 253 TREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 253 ~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
+.+++.++++++||+++....
T Consensus 198 s~~~l~~~l~~aGf~~~~~~~ 218 (275)
T 3bkx_A 198 TPDTLAQIAHDNTWTYTAGTI 218 (275)
T ss_dssp CHHHHHHHHHHHTCEEEECCC
T ss_pred CHHHHHHHHHHCCCeeEEEEE
Confidence 999999999999999987643
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=144.05 Aligned_cols=139 Identities=12% Similarity=0.002 Sum_probs=99.5
Q ss_pred HHHHhhHHhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEE
Q psy11741 57 LIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFV 136 (352)
Q Consensus 57 ~~~~~~~~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v 136 (352)
..+.|+..+..||+..+..+ ...+....+..+ + ..++.+|||||||+|.++..+++ .+.+|
T Consensus 10 ~a~~wd~~a~~f~~~~~~~~------~~~~~~~il~~l-~--------l~~g~~VLDlGcGtG~~a~~La~----~g~~V 70 (261)
T 3iv6_A 10 KAEAWELIGNQFWTIGRVAA------RPSDRENDIFLE-N--------IVPGSTVAVIGASTRFLIEKALE----RGASV 70 (261)
T ss_dssp THHHHHTTTTHHHHTSCGGG------SCCHHHHHHHTT-T--------CCTTCEEEEECTTCHHHHHHHHH----TTCEE
T ss_pred hhhHHHHHHHHHHHHhhccc------cHHHHHHHHHhc-C--------CCCcCEEEEEeCcchHHHHHHHh----cCCEE
Confidence 45667777777877544321 012322332222 1 23478999999999999999998 66799
Q ss_pred EEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC-CCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEE
Q psy11741 137 YGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP-PFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMV 215 (352)
Q Consensus 137 ~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 215 (352)
+|+|+|+.|++.|+++.... ++..++.+..... ...+++||+|++..+++|+..++...+++++.++| |||.+
T Consensus 71 ~gvD~S~~ml~~Ar~~~~~~-----~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l 144 (261)
T 3iv6_A 71 TVFDFSQRMCDDLAEALADR-----CVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTV 144 (261)
T ss_dssp EEEESCHHHHHHHHHHTSSS-----CCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEE
T ss_pred EEEECCHHHHHHHHHHHHhc-----cceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEE
Confidence 99999999999999987543 2233333211100 11257899999999999998888999999999999 99999
Q ss_pred EEEeC
Q psy11741 216 LFRDY 220 (352)
Q Consensus 216 ~~~~~ 220 (352)
+++..
T Consensus 145 ~lS~~ 149 (261)
T 3iv6_A 145 RASVK 149 (261)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99754
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=147.31 Aligned_cols=138 Identities=18% Similarity=0.268 Sum_probs=110.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.|+++....+.++.+.++|+.+. +. +++||+|++.
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~----~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~-~~~fD~i~~~ 191 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSL----LGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAA----NI-QENYDFIVST 191 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGC----CC-CSCEEEEEEC
T ss_pred CCcEEEECCCCCHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccc----cc-cCCccEEEEc
Confidence 78999999999999999998 567999999999999999998876656899999999853 33 6899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|+++++...+++++.++|+|||.+++........ +. ........++.+++..++.. |.
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---------------~~-~~~~~~~~~~~~~l~~~~~~--~~ 253 (286)
T 3m70_A 192 VVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDD---------------VP-CPLPFSFTFAENELKEYYKD--WE 253 (286)
T ss_dssp SSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSS---------------SC-CSSCCSCCBCTTHHHHHTTT--SE
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCC---------------CC-CCCCccccCCHHHHHHHhcC--CE
Confidence 99999988889999999999999999977754322110 00 01122345778889998865 87
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
++...
T Consensus 254 ~~~~~ 258 (286)
T 3m70_A 254 FLEYN 258 (286)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77664
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.6e-18 Score=147.97 Aligned_cols=148 Identities=18% Similarity=0.274 Sum_probs=104.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+++|+|+|+.|++.|+++.. . .+.++|+. .+++++++||+|++.
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~l~~a~~~~~---~--~~~~~d~~----~~~~~~~~fD~v~~~ 121 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQE----RGFEVVLVDPSKEMLEVAREKGV---K--NVVEAKAE----DLPFPSGAFEAVLAL 121 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHT----TTCEEEEEESCHHHHHHHHHHTC---S--CEEECCTT----SCCSCTTCEEEEEEC
T ss_pred CCeEEEeCCCcCHHHHHHHH----cCCeEEEEeCCHHHHHHHHhhcC---C--CEEECcHH----HCCCCCCCEEEEEEc
Confidence 78999999999999999988 56799999999999999998864 1 27888887 445667899999998
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCcc------ccCceeecCC---CeeeeccCHHHHH
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRC------LQDNFYARGD---GTLVYFFTREEVK 258 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~~ 258 (352)
.++.|+. .++..+++++.++|+|||.+++..++.............. +......... .....+++.+++.
T Consensus 122 ~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 200 (260)
T 2avn_A 122 GDVLSYV-ENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLD 200 (260)
T ss_dssp SSHHHHC-SCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGS
T ss_pred chhhhcc-ccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHH
Confidence 8666553 3489999999999999999999876643111000000000 0000000000 0112367888888
Q ss_pred HHHHhCCCceEEee
Q psy11741 259 TMFESAGFVEKQNL 272 (352)
Q Consensus 259 ~ll~~~Gf~~~~~~ 272 (352)
.+ +||+++...
T Consensus 201 ~l---aGf~~~~~~ 211 (260)
T 2avn_A 201 SL---EGFETVDIR 211 (260)
T ss_dssp SC---TTEEEEEEE
T ss_pred Hh---cCceEEEEE
Confidence 87 999988764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.4e-18 Score=150.08 Aligned_cols=105 Identities=15% Similarity=0.297 Sum_probs=91.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC---CCceEEEEecCCCCCCCCCCCC------
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK---PDRCHAFVCDVTSEDWNPPFAP------ 178 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~------ 178 (352)
+.+|||||||+|..+..+++.+. ++.+|+|+|+|+.|++.|+++.... ..++.++++|+.+ +++++
T Consensus 37 ~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~~~~ 111 (299)
T 3g5t_A 37 RKLLVDVGCGPGTATLQMAQELK-PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD----FKFLGADSVDK 111 (299)
T ss_dssp CSEEEEETCTTTHHHHHHHHHSS-CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC----CGGGCTTTTTS
T ss_pred CCEEEEECCCCCHHHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh----CCccccccccC
Confidence 78999999999999999996432 6789999999999999999987654 5789999999984 34444
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++||+|++..++||+ ++..+++++.++|+|||.|++.++
T Consensus 112 ~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 150 (299)
T 3g5t_A 112 QKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGY 150 (299)
T ss_dssp SCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 799999999999999 788999999999999999998544
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-16 Score=142.01 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=92.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--------CCCceEEEEecCCCCCCCCCC--C
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--------KPDRCHAFVCDVTSEDWNPPF--A 177 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~v~~~~~d~~~~~~~~~~--~ 177 (352)
+.+|||+|||+|.++..+++. ++.+++|+|+|+.|++.|+++... ...++.+.++|+.......++ +
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKG---RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCEEEEECCCCcHHHHHHHhc---CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 679999999999999999873 567999999999999999987653 224789999999864311123 3
Q ss_pred CCcceEEEehhhhhcc--ChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 178 PESLDIVLLIFVLDAI--NPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 178 ~~~fD~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
+++||+|++..++|++ +.++...++++++++|+|||.+++.+++.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 4589999999999987 55778899999999999999999987654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-17 Score=137.02 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=101.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.|++++...+ .++.++++|+... ...+++++||+|++
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQN--PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL--TDYFEDGEIDRLYL 117 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHC--TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG--GGTSCTTCCSEEEE
T ss_pred CCeEEEEccCcCHHHHHHHHHC--CCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHH--HhhcCCCCCCEEEE
Confidence 6799999999999999999976 77899999999999999999876533 5899999999742 11145778999999
Q ss_pred hhhhhccChh------HHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHH
Q psy11741 187 IFVLDAINPN------KMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 187 ~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (352)
.....+.... ....+++.+.++|+|||.+++.+... ...+.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~~~~~~~~~ 168 (214)
T 1yzh_A 118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR-----------------------------GLFEYSLVS 168 (214)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH-----------------------------HHHHHHHHH
T ss_pred ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH-----------------------------HHHHHHHHH
Confidence 8654332100 23679999999999999999964321 012456778
Q ss_pred HHhCCCceEEeee
Q psy11741 261 FESAGFVEKQNLI 273 (352)
Q Consensus 261 l~~~Gf~~~~~~~ 273 (352)
++++||..+....
T Consensus 169 ~~~~g~~~~~~~~ 181 (214)
T 1yzh_A 169 FSQYGMKLNGVWL 181 (214)
T ss_dssp HHHHTCEEEEEES
T ss_pred HHHCCCeeeeccc
Confidence 8889998876543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=149.83 Aligned_cols=151 Identities=14% Similarity=0.144 Sum_probs=115.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+..+|||||||+|.++..+++.+ ++.+++++|+ +.+++.|+++.... ..++++..+|+.. .. +. .||+|
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~---~~--p~-~~D~v 272 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAF--PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE---TI--PD-GADVY 272 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC--TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT---CC--CS-SCSEE
T ss_pred cCcEEEEeCCCccHHHHHHHHHC--CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC---CC--CC-CceEE
Confidence 46899999999999999999987 7889999999 99999999887653 3679999999873 22 23 79999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..++|++++++...+|++++++|+|||++++.+...+...... ............ ....++.+++..+++++
T Consensus 273 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~d~~~~~~~---~g~~~t~~e~~~ll~~a 346 (369)
T 3gwz_A 273 LIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS---TLFVDLLLLVLV---GGAERSESEFAALLEKS 346 (369)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH---HHHHHHHHHHHH---SCCCBCHHHHHHHHHTT
T ss_pred EhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc---hhHhhHHHHhhc---CCccCCHHHHHHHHHHC
Confidence 999999999777778999999999999999999876443311100 000000000000 11247899999999999
Q ss_pred CCceEEee
Q psy11741 265 GFVEKQNL 272 (352)
Q Consensus 265 Gf~~~~~~ 272 (352)
||+++...
T Consensus 347 Gf~~~~~~ 354 (369)
T 3gwz_A 347 GLRVERSL 354 (369)
T ss_dssp TEEEEEEE
T ss_pred CCeEEEEE
Confidence 99998874
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=148.44 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=115.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++.+ ++.+++|+|+| .+++.|+++.... ..++++..+|+.+. +++. .||+|
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~-~~D~v 236 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHN--PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV----DYGN-DYDLV 236 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHC--TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS----CCCS-CEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHC--CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC----CCCC-CCcEE
Confidence 37899999999999999999987 77899999999 9999999886543 24699999998742 3333 49999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++.+++|+++.++...++++++++|+|||++++.+...+........ ............ .....++.+++.++++++
T Consensus 237 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~t~~~~~~ll~~a 313 (335)
T 2r3s_A 237 LLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPD-AAAFSLVMLATT--PNGDAYTFAEYESMFSNA 313 (335)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHH-HHHHHHHHHHHS--SSCCCCCHHHHHHHHHHT
T ss_pred EEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchH-HHHHHHHHHeeC--CCCCcCCHHHHHHHHHHC
Confidence 99999999987888999999999999999999988654421100000 000000000000 012347899999999999
Q ss_pred CCceEEee
Q psy11741 265 GFVEKQNL 272 (352)
Q Consensus 265 Gf~~~~~~ 272 (352)
||..+...
T Consensus 314 Gf~~~~~~ 321 (335)
T 2r3s_A 314 GFSHSQLH 321 (335)
T ss_dssp TCSEEEEE
T ss_pred CCCeeeEE
Confidence 99988763
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-18 Score=158.81 Aligned_cols=146 Identities=20% Similarity=0.188 Sum_probs=106.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||||||+|.++..+++ .+.+++|+|+|+.|++.|+++.... ....+...+.. .+++++++||+|++
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~----~g~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~~~----~l~~~~~~fD~I~~ 177 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQE----AGVRHLGFEPSSGVAAKAREKGIRV-RTDFFEKATAD----DVRRTEGPANVIYA 177 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHH----TTCEEEEECCCHHHHHHHHTTTCCE-ECSCCSHHHHH----HHHHHHCCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHH----cCCcEEEECCCHHHHHHHHHcCCCc-ceeeechhhHh----hcccCCCCEEEEEE
Confidence 478999999999999999998 5669999999999999998872110 00011122222 23345689999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
..+++|+ .++..++++++++|||||++++..++....... .. +......+..+++.+++..+++++||
T Consensus 178 ~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~----~~------~~~~~~~~~~~~s~~~l~~ll~~aGf 245 (416)
T 4e2x_A 178 ANTLCHI--PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK----TS------FDQIFDEHFFLFSATSVQGMAQRCGF 245 (416)
T ss_dssp ESCGGGC--TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHH----TC------GGGCSTTCCEECCHHHHHHHHHHTTE
T ss_pred CChHHhc--CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhh----cc------hhhhhhhhhhcCCHHHHHHHHHHcCC
Confidence 9999999 689999999999999999999986553221110 00 01111234456899999999999999
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
.+++...
T Consensus 246 ~~~~~~~ 252 (416)
T 4e2x_A 246 ELVDVQR 252 (416)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9987754
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=150.43 Aligned_cols=154 Identities=13% Similarity=0.178 Sum_probs=114.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||||||+|.++..+++.+ ++.+++++|+ +.+++.|+++....+ .++++..+|+.+.. ++.++.||+|+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~~D~v~ 253 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRH--PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDAR---NFEGGAADVVM 253 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHC--TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGG---GGTTCCEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhC--CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCc---ccCCCCccEEE
Confidence 6799999999999999999987 7889999999 889999998866533 46999999987521 11346799999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhh-HhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQ-LRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+..++|++++++...++++++++|+|||++++.+...+.... .... ............ ....++.+++..+++++
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~t~~e~~~ll~~a 329 (352)
T 3mcz_A 254 LNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALS--ADFSLHMMVNTN--HGELHPTPWIAGVVRDA 329 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHH--HHHHHHHHHHST--TCCCCCHHHHHHHHHHT
T ss_pred EecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchH--HHhhHHHHhhCC--CCCcCCHHHHHHHHHHC
Confidence 999999998778899999999999999999998764332110 0000 000000000000 11237899999999999
Q ss_pred CCceEEe
Q psy11741 265 GFVEKQN 271 (352)
Q Consensus 265 Gf~~~~~ 271 (352)
||++++.
T Consensus 330 Gf~~~~~ 336 (352)
T 3mcz_A 330 GLAVGER 336 (352)
T ss_dssp TCEEEEE
T ss_pred CCceeee
Confidence 9999874
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=135.94 Aligned_cols=182 Identities=13% Similarity=0.121 Sum_probs=119.5
Q ss_pred ccCCCHHHHHHhhHHhhhh--HHHHhhhccccccc-chhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHH
Q psy11741 50 VLQIDKNLIQTLNEDVAKN--WDAFYNVHQNRFFK-DRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIV 126 (352)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~y--w~~~y~~~~~~f~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~ 126 (352)
..++++...+.+......+ |+..+.... ... ...|....+..+..... ....++.+|||+|||+|..+..++
T Consensus 15 ~~~l~~~~~~~~~~~~~~l~~~~~~~~l~~--~~~~~~~~~~~~~d~l~~~~~---~~~~~~~~vLDiG~G~G~~~~~la 89 (240)
T 1xdz_A 15 GISLSPRQLEQFELYYDMLVEWNEKINLTS--ITEKKEVYLKHFYDSITAAFY---VDFNQVNTICDVGAGAGFPSLPIK 89 (240)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHSCCCS--CCSHHHHHHHTHHHHHGGGGT---SCGGGCCEEEEECSSSCTTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhHhcCccc--cCCHHHHHHHHHHHHHhHHHh---cccCCCCEEEEecCCCCHHHHHHH
Confidence 4566777777777666655 555432211 111 11222222222211100 001137899999999999999999
Q ss_pred hhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHH
Q psy11741 127 EHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQV 205 (352)
Q Consensus 127 ~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~ 205 (352)
... ++.+|+|+|+|+.|++.|+++....+ .+++++++|+.+.... +..+++||+|++.. + .++..+++.+
T Consensus 90 ~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~V~~~~----~--~~~~~~l~~~ 160 (240)
T 1xdz_A 90 ICF--PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-KDVRESYDIVTARA----V--ARLSVLSELC 160 (240)
T ss_dssp HHC--TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-TTTTTCEEEEEEEC----C--SCHHHHHHHH
T ss_pred HhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-ccccCCccEEEEec----c--CCHHHHHHHH
Confidence 754 77899999999999999999876533 4699999998642110 11157899999865 2 4678999999
Q ss_pred HHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 206 YKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 206 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
.++|+|||.+++....... ....++...++..||.+....
T Consensus 161 ~~~LkpgG~l~~~~g~~~~---------------------------~~~~~~~~~l~~~g~~~~~~~ 200 (240)
T 1xdz_A 161 LPLVKKNGLFVALKAASAE---------------------------EELNAGKKAITTLGGELENIH 200 (240)
T ss_dssp GGGEEEEEEEEEEECC-CH---------------------------HHHHHHHHHHHHTTEEEEEEE
T ss_pred HHhcCCCCEEEEEeCCCch---------------------------HHHHHHHHHHHHcCCeEeEEE
Confidence 9999999999886321100 113457778899999887653
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=140.25 Aligned_cols=139 Identities=12% Similarity=0.244 Sum_probs=101.7
Q ss_pred hHHHHhh---hcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccc----cHHHHHhhcCC-C-CeEEEE
Q psy11741 68 NWDAFYN---VHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGN----SVFPIVEHCKN-D-NVFVYG 138 (352)
Q Consensus 68 yw~~~y~---~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~----~~~~l~~~~~~-~-~~~v~g 138 (352)
-|..+.. .+.+.|+.+...+...-..++|.. ++.+|||+|||||. ++..+++.++. + +.+|+|
T Consensus 71 e~~~l~~~lt~~~t~FfRd~~~f~~l~~~llp~~--------~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~a 142 (274)
T 1af7_A 71 EWQAFINALTTNLTAFFREAHHFPILAEHARRRH--------GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFA 142 (274)
T ss_dssp HHHHHHHHHCCCCCCTTTTTTHHHHHHHHHHHSC--------SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEE
T ss_pred HHHHHHHHHhhcCccccCChHHHHHHHHHccCCC--------CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEE
Confidence 3554442 344567776555444334455541 25799999999998 55556665321 1 579999
Q ss_pred EeCCHHHHHHHHhcccc-----------------------CC---------CceEEEEecCCCCCCCCCCC-CCcceEEE
Q psy11741 139 CDFSENAVNILKEHEEY-----------------------KP---------DRCHAFVCDVTSEDWNPPFA-PESLDIVL 185 (352)
Q Consensus 139 vD~s~~~l~~a~~~~~~-----------------------~~---------~~v~~~~~d~~~~~~~~~~~-~~~fD~V~ 185 (352)
+|+|+.|++.|+++.-. .+ .+|.|.++|+.+. +++ .++||+|+
T Consensus 143 tDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~----~~~~~~~fDlI~ 218 (274)
T 1af7_A 143 SDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEK----QYNVPGPFDAIF 218 (274)
T ss_dssp EESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCS----SCCCCCCEEEEE
T ss_pred EECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCC----CCCcCCCeeEEE
Confidence 99999999999987410 00 3689999999752 232 57899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
|.++++|++++...+++++++++|+|||+|++.
T Consensus 219 crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 219 CRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp ECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 999999998888899999999999999999984
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.2e-17 Score=147.38 Aligned_cols=153 Identities=19% Similarity=0.330 Sum_probs=114.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||||||+|.++..+++.+ ++.+++++|+ +.+++.|+++.... ..++++..+|+.+. ++++ +|+|
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~--~D~v 260 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHF--PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE----SYPE--ADAV 260 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHC--TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS----CCCC--CSEE
T ss_pred CCCEEEEECCcccHHHHHHHHHC--CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC----CCCC--CCEE
Confidence 47899999999999999999987 7889999999 99999999887653 24699999999742 3333 3999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceee-cC-CCeeeeccCHHHHHHHHH
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA-RG-DGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~ll~ 262 (352)
++..++|++++++...+|++++++|+|||++++.+...+........ ... .... .. ......+++.+++.++++
T Consensus 261 ~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~--~~~--~~~~~~~~g~~~~~~~t~~e~~~ll~ 336 (359)
T 1x19_A 261 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFD--YLS--HYILGAGMPFSVLGFKEQARYKEILE 336 (359)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHH--HHH--HHGGGGGSSCCCCCCCCGGGHHHHHH
T ss_pred EEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHH--HHH--HHHHhcCCCCcccCCCCHHHHHHHHH
Confidence 99999999977779999999999999999998877554321000000 000 0000 11 111224588999999999
Q ss_pred hCCCceEEee
Q psy11741 263 SAGFVEKQNL 272 (352)
Q Consensus 263 ~~Gf~~~~~~ 272 (352)
++||+++...
T Consensus 337 ~aGf~~v~~~ 346 (359)
T 1x19_A 337 SLGYKDVTMV 346 (359)
T ss_dssp HHTCEEEEEE
T ss_pred HCCCceEEEE
Confidence 9999988764
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=135.82 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=102.1
Q ss_pred CCCeEEEEcCC-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+||| +|.++..+++.. +.+|+|+|+|+.+++.|++++...+.++.++++|+... .++++++||+|+
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD~I~ 128 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF---NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGII---KGVVEGTFDVIF 128 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH---CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSS---TTTCCSCEEEEE
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhh---hhcccCceeEEE
Confidence 37899999999 999999999853 56999999999999999999877656899999997532 234468999999
Q ss_pred ehhhhhccC-----------------hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCee
Q psy11741 186 LIFVLDAIN-----------------PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL 248 (352)
Q Consensus 186 ~~~~l~~~~-----------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
++-.+++.+ .+....+++.+.++|||||++++......
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------------------- 183 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE------------------------- 183 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-------------------------
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-------------------------
Confidence 875544321 12357899999999999999998643210
Q ss_pred eeccCHHHHHHHHHhCCCceEEee
Q psy11741 249 VYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 249 ~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
...+++..++++.||.+....
T Consensus 184 ---~~~~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 184 ---KLLNVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp ---HHHHHHHHHHHHTTCEEEEEE
T ss_pred ---hHHHHHHHHHHHcCCceEEEE
Confidence 235678889999999776653
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-17 Score=149.63 Aligned_cols=150 Identities=13% Similarity=0.118 Sum_probs=109.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+..+|||||||+|.++..+++.+ ++.+++++|+ +.+++.|++. .+++++.+|+.+ +++.+ |+|++
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~p~~--D~v~~ 267 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKY--PSINAINFDL-PHVIQDAPAF-----SGVEHLGGDMFD-----GVPKG--DAIFI 267 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC--TTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-----CCCCC--SEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhC--CCCEEEEEeh-HHHHHhhhhc-----CCCEEEecCCCC-----CCCCC--CEEEE
Confidence 46899999999999999999987 8889999999 8888877643 579999999874 23333 99999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhH--hhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL--RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
..++|++++++...+|++++++|+|||+|++.+...+..... ................ .....++.+++.++++++
T Consensus 268 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~g~~rt~~e~~~ll~~A 345 (368)
T 3reo_A 268 KWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYN--PGGKERTEKEFQALAMAS 345 (368)
T ss_dssp ESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHS--SBCCCCCHHHHHHHHHHT
T ss_pred echhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhc--CCCccCCHHHHHHHHHHC
Confidence 999999988888899999999999999999988654321100 0000000000000000 011236899999999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||+.+++..
T Consensus 346 GF~~v~~~~ 354 (368)
T 3reo_A 346 GFRGFKVAS 354 (368)
T ss_dssp TCCEEEEEE
T ss_pred CCeeeEEEE
Confidence 999988643
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=140.74 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=109.3
Q ss_pred CCeEEEEcCCc---cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC-------CCCC
Q psy11741 108 TKNILEIGCGV---GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN-------PPFA 177 (352)
Q Consensus 108 ~~~vLD~GcG~---G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~ 177 (352)
..+|||||||+ |.++..+.+.. ++.+|+|+|+|+.|++.|+++... ..++.++++|+.+..+. -.++
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~--p~~~v~~vD~sp~~l~~Ar~~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVN--PDARVVYVDIDPMVLTHGRALLAK-DPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHC--TTCEEEEEESSHHHHHHHHHHHTT-CTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred CCEEEEECCCCCCCChHHHHHHHhC--CCCEEEEEECChHHHHHHHHhcCC-CCCeEEEEeeCCCchhhhccchhhccCC
Confidence 47999999999 98876666554 778999999999999999998743 35799999999752100 0122
Q ss_pred CCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHH
Q psy11741 178 PESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEV 257 (352)
Q Consensus 178 ~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (352)
..+||+|++..++||++.++...++++++++|+|||+|++.+........... +. ..+... +....+++.+++
T Consensus 155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~-----~~-~~~~~~-~~~~~~~s~~ei 227 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQK-----LA-RITREN-LGEGWARTPEEI 227 (274)
T ss_dssp TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHH-----HH-HHHHHH-HSCCCCBCHHHH
T ss_pred CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHH-----HH-HHHHhc-CCCCccCCHHHH
Confidence 35899999999999997667999999999999999999998876532011000 00 001100 012245799999
Q ss_pred HHHHHhCCCceEE
Q psy11741 258 KTMFESAGFVEKQ 270 (352)
Q Consensus 258 ~~ll~~~Gf~~~~ 270 (352)
..+| .||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 5998765
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=146.70 Aligned_cols=153 Identities=21% Similarity=0.214 Sum_probs=112.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||||||+|.++..+++.+ ++.+++++|+ +.+++.|+++....+ .++++..+|+.+ .++ . .||+|
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~--~-~~D~v 252 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRA--PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK---PLP--V-TADVV 252 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHC--TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS---CCS--C-CEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHC--CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC---cCC--C-CCCEE
Confidence 47899999999999999999987 7889999999 999999998876533 479999999874 222 2 49999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC--CCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY--GRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
++..++|+++.++...++++++++|+|||++++.+. ..+......... ........... ...++.+++.++++
T Consensus 253 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~ll~ 327 (374)
T 1qzz_A 253 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFST--LLDLRMLTFMG---GRVRTRDEVVDLAG 327 (374)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHH--HHHHHHHHHHS---CCCCCHHHHHHHHH
T ss_pred EEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhh--hcchHHHHhCC---CcCCCHHHHHHHHH
Confidence 999999999766778999999999999999999877 322111000000 00000000001 13479999999999
Q ss_pred hCCCceEEeee
Q psy11741 263 SAGFVEKQNLI 273 (352)
Q Consensus 263 ~~Gf~~~~~~~ 273 (352)
++||+++....
T Consensus 328 ~aGf~~~~~~~ 338 (374)
T 1qzz_A 328 SAGLALASERT 338 (374)
T ss_dssp TTTEEEEEEEE
T ss_pred HCCCceEEEEE
Confidence 99999887643
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-17 Score=140.74 Aligned_cols=104 Identities=14% Similarity=0.224 Sum_probs=87.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe-
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL- 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 186 (352)
+.+|||||||+|..+..+++. .+.+++|||+|+.|++.|+++....+.++.++.+|+... ..++++++||.|+.
T Consensus 61 G~rVLdiG~G~G~~~~~~~~~---~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 61 GGRVLEVGFGMAIAASKVQEA---PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV--APTLPDGHFDGILYD 135 (236)
T ss_dssp CEEEEEECCTTSHHHHHHTTS---CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH--GGGSCTTCEEEEEEC
T ss_pred CCeEEEECCCccHHHHHHHHh---CCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhh--cccccccCCceEEEe
Confidence 889999999999999998875 346899999999999999999887778899999887642 22456788999975
Q ss_pred ----hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 ----IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ----~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
...++|+ .+...++++++|+|||||+|++.
T Consensus 136 ~~~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 136 TYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eeecccchhhh--cchhhhhhhhhheeCCCCEEEEE
Confidence 4455666 78999999999999999999874
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=135.10 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=105.1
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
...++.+|||+|||+|.++..+++..+ +..+|+|+|+|+.|++.+++++... .|+..+.+|+.... ..+...+++|+
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG-~~G~V~avD~s~~~~~~l~~~a~~~-~ni~~V~~d~~~p~-~~~~~~~~vDv 150 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIG-PRGRIYGVEFAPRVMRDLLTVVRDR-RNIFPILGDARFPE-KYRHLVEGVDG 150 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC-TTCEEEEEECCHHHHHHHHHHSTTC-TTEEEEESCTTCGG-GGTTTCCCEEE
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhHhh-cCeeEEEEeccCcc-ccccccceEEE
Confidence 455699999999999999999999876 6779999999999999999887653 58999999987543 23455688999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
|++.. .+. ++...++.++.+.|||||.+++....... ... ... . ....+..+.+++
T Consensus 151 Vf~d~--~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~-d~~---------------~p~-~---~~~~~ev~~L~~ 206 (233)
T 4df3_A 151 LYADV--AQP--EQAAIVVRNARFFLRDGGYMLMAIKARSI-DVT---------------TEP-S---EVYKREIKTLMD 206 (233)
T ss_dssp EEECC--CCT--THHHHHHHHHHHHEEEEEEEEEEEECCHH-HHH---------------TCC-C---HHHHHHHHHHHH
T ss_pred EEEec--cCC--hhHHHHHHHHHHhccCCCEEEEEEecccC-CCC---------------CCh-H---HHHHHHHHHHHH
Confidence 98642 332 67788999999999999999986432210 000 000 0 112344567889
Q ss_pred CCCceEEee
Q psy11741 264 AGFVEKQNL 272 (352)
Q Consensus 264 ~Gf~~~~~~ 272 (352)
+||+.++..
T Consensus 207 ~GF~l~e~i 215 (233)
T 4df3_A 207 GGLEIKDVV 215 (233)
T ss_dssp TTCCEEEEE
T ss_pred CCCEEEEEE
Confidence 999988753
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=129.20 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=100.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.|+++....+ .++ ++.+|+.+ .++..+++||+|
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~---~~~~~~~~~D~i 98 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRST--PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR---AFDDVPDNPDVI 98 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTS--SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG---GGGGCCSCCSEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh---hhhccCCCCCEE
Confidence 37799999999999999999976 68899999999999999999876543 267 88888754 333323789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..++++ ..+++++.++|+|||.+++..... .+...+..++++.
T Consensus 99 ~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~-----------------------------~~~~~~~~~~~~~ 143 (178)
T 3hm2_A 99 FIGGGLTA------PGVFAAAWKRLPVGGRLVANAVTV-----------------------------ESEQMLWALRKQF 143 (178)
T ss_dssp EECC-TTC------TTHHHHHHHTCCTTCEEEEEECSH-----------------------------HHHHHHHHHHHHH
T ss_pred EECCcccH------HHHHHHHHHhcCCCCEEEEEeecc-----------------------------ccHHHHHHHHHHc
Confidence 99888776 578999999999999999976542 2345677888889
Q ss_pred CCceEEeeeee
Q psy11741 265 GFVEKQNLIDR 275 (352)
Q Consensus 265 Gf~~~~~~~~~ 275 (352)
|+.........
T Consensus 144 ~~~~~~~~~~~ 154 (178)
T 3hm2_A 144 GGTISSFAISH 154 (178)
T ss_dssp CCEEEEEEEEE
T ss_pred CCeeEEEEeec
Confidence 98887765543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-17 Score=148.79 Aligned_cols=149 Identities=14% Similarity=0.149 Sum_probs=109.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+..+|||||||+|.++..+++.+ ++.+++++|+ +.+++.|++. .+++++.+|+.+ +++.+ |+|++
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-----~~p~~--D~v~~ 265 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHY--PTIKGVNFDL-PHVISEAPQF-----PGVTHVGGDMFK-----EVPSG--DTILM 265 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC--TTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-----CCCCC--SEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC--CCCeEEEecC-HHHHHhhhhc-----CCeEEEeCCcCC-----CCCCC--CEEEe
Confidence 36899999999999999999987 8889999999 8888877643 579999999874 23333 99999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhH--hhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL--RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
..++|++++++...+|++++++|+|||+|++.+...+..... ................. ....++.+++..+++++
T Consensus 266 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~--~g~~rt~~e~~~ll~~A 343 (364)
T 3p9c_A 266 KWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNP--GGRERYEREFQALARGA 343 (364)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCS--SCCCCBHHHHHHHHHHT
T ss_pred hHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhccc--CCccCCHHHHHHHHHHC
Confidence 999999988889999999999999999999988654321000 00000000000000000 11236899999999999
Q ss_pred CCceEEee
Q psy11741 265 GFVEKQNL 272 (352)
Q Consensus 265 Gf~~~~~~ 272 (352)
||+.++..
T Consensus 344 GF~~v~~~ 351 (364)
T 3p9c_A 344 GFTGVKST 351 (364)
T ss_dssp TCCEEEEE
T ss_pred CCceEEEE
Confidence 99998864
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-16 Score=129.68 Aligned_cols=120 Identities=12% Similarity=0.127 Sum_probs=98.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|+++....+ .++.+..+|+.+. ++ ..++||+|+
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~-~~~~~D~i~ 113 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLM--PNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG---LD-DLPDPDRVF 113 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHC--TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT---CT-TSCCCSEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh---hh-cCCCCCEEE
Confidence 47899999999999999999975 66899999999999999999876533 5799999998642 21 236799999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+++ +...+++++.++|+|||++++..... .+.+++..+++++|
T Consensus 114 ~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~~~~~~~~~l~~~g 159 (204)
T 3e05_A 114 IGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL-----------------------------DTLTKAVEFLEDHG 159 (204)
T ss_dssp ESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH-----------------------------HHHHHHHHHHHHTT
T ss_pred ECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc-----------------------------ccHHHHHHHHHHCC
Confidence 987654 56789999999999999999975431 23567888999999
Q ss_pred C
Q psy11741 266 F 266 (352)
Q Consensus 266 f 266 (352)
|
T Consensus 160 ~ 160 (204)
T 3e05_A 160 Y 160 (204)
T ss_dssp C
T ss_pred C
Confidence 9
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-16 Score=146.48 Aligned_cols=149 Identities=14% Similarity=0.135 Sum_probs=107.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc--cCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE--YKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||||||+|..+..+++.+ ++.+++++|++ .++. +++.. ....++++..+|+.+ .+ + +||+|
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~---~~--p--~~D~v 251 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREH--PGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLR---EV--P--HADVH 251 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHC--TTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTT---CC--C--CCSEE
T ss_pred CCceEEEECCccCHHHHHHHHHC--CCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCC---CC--C--CCcEE
Confidence 37799999999999999999987 88899999994 4554 33332 234679999999863 22 2 89999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..++|++++++...+|++++++|||||+|++.+...+........ .......... .....++.+++.++++++
T Consensus 252 ~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~--~~~d~~~~~~---~~~~~~t~~e~~~ll~~a 326 (348)
T 3lst_A 252 VLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQS--KEMDFMMLAA---RTGQERTAAELEPLFTAA 326 (348)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHH--HHHHHHHHHT---TSCCCCBHHHHHHHHHHT
T ss_pred EEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchh--hhcChhhhhc---CCCcCCCHHHHHHHHHHC
Confidence 99999999977777899999999999999999987644321100000 0000000000 111246899999999999
Q ss_pred CCceEEee
Q psy11741 265 GFVEKQNL 272 (352)
Q Consensus 265 Gf~~~~~~ 272 (352)
||++++..
T Consensus 327 Gf~~~~~~ 334 (348)
T 3lst_A 327 GLRLDRVV 334 (348)
T ss_dssp TEEEEEEE
T ss_pred CCceEEEE
Confidence 99998774
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=145.47 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=112.8
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+|||+|||+|..+..+++.+ ++.+++++|+ +.+++.|+++.... ..++++..+|+.+ +++ ++||+|++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~-~~~D~v~~ 239 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAE--PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-----EVP-SNGDIYLL 239 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHC--TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-----CCC-SSCSEEEE
T ss_pred CEEEEeCCCchHHHHHHHHHC--CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-----CCC-CCCCEEEE
Confidence 799999999999999999987 7789999999 99999999886542 3579999999874 223 57999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
..++|++++++...++++++++|+|||++++.+...+......... ........... ...++.+++.++++++||
T Consensus 240 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~t~~e~~~ll~~aGf 314 (334)
T 2ip2_A 240 SRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSV--LWDVHLFMACA---GRHRTTEEVVDLLGRGGF 314 (334)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHH--HHHHHHHHHHS---CCCCBHHHHHHHHHHTTE
T ss_pred chhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhH--HhhhHhHhhCC---CcCCCHHHHHHHHHHCCC
Confidence 9999999777778999999999999999999876543211000000 00000000000 123689999999999999
Q ss_pred ceEEee
Q psy11741 267 VEKQNL 272 (352)
Q Consensus 267 ~~~~~~ 272 (352)
.++...
T Consensus 315 ~~~~~~ 320 (334)
T 2ip2_A 315 AVERIV 320 (334)
T ss_dssp EEEEEE
T ss_pred ceeEEE
Confidence 988764
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=145.25 Aligned_cols=153 Identities=19% Similarity=0.207 Sum_probs=114.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||||||+|.++..+++.. ++.+++++|+ +.+++.|+++....+ .++++..+|+.+ .++ ..||+|
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~---~~~D~v 253 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRA--PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE---PLP---RKADAI 253 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC--TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS---CCS---SCEEEE
T ss_pred cCcEEEEeCCcCcHHHHHHHHhC--CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC---CCC---CCccEE
Confidence 47899999999999999999987 7789999999 999999998876533 479999999874 222 249999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC-CCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG-RYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
++..++|+++.++...++++++++|+|||++++.+.. .++........ ........... ...++.+++.+++++
T Consensus 254 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~t~~e~~~ll~~ 328 (360)
T 1tw3_A 254 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFT--ELDLRMLVFLG---GALRTREKWDGLAAS 328 (360)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHH--HHHHHHHHHHS---CCCCBHHHHHHHHHH
T ss_pred EEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhh--hccHHHhhhcC---CcCCCHHHHHHHHHH
Confidence 9999999997777789999999999999999998876 32211000000 00000000000 134789999999999
Q ss_pred CCCceEEeee
Q psy11741 264 AGFVEKQNLI 273 (352)
Q Consensus 264 ~Gf~~~~~~~ 273 (352)
+||.++....
T Consensus 329 aGf~~~~~~~ 338 (360)
T 1tw3_A 329 AGLVVEEVRQ 338 (360)
T ss_dssp TTEEEEEEEE
T ss_pred CCCeEEEEEe
Confidence 9999887643
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=135.39 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=96.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCC-CCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFA-PESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|+++ ..++.++++|+.+ .++++ +++||+|++
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~d~~~---~~~~~~~~~fD~v~~ 117 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGP----QAARWAAYDFSPELLKLARAN----APHADVYEWNGKG---ELPAGLGAPFGLIVS 117 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGG----GSSEEEEEESCHHHHHHHHHH----CTTSEEEECCSCS---SCCTTCCCCEEEEEE
T ss_pred CCeEEEeCCCCCHHHHHHHH----cCCEEEEEECCHHHHHHHHHh----CCCceEEEcchhh---ccCCcCCCCEEEEEe
Confidence 78999999999999999998 456999999999999999988 3568999999964 45666 789999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
. .++..+++++.++|||||.++... ...+.+++...++++||
T Consensus 118 ~--------~~~~~~l~~~~~~LkpgG~l~~~~------------------------------~~~~~~~~~~~l~~~Gf 159 (226)
T 3m33_A 118 R--------RGPTSVILRLPELAAPDAHFLYVG------------------------------PRLNVPEVPERLAAVGW 159 (226)
T ss_dssp E--------SCCSGGGGGHHHHEEEEEEEEEEE------------------------------SSSCCTHHHHHHHHTTC
T ss_pred C--------CCHHHHHHHHHHHcCCCcEEEEeC------------------------------CcCCHHHHHHHHHHCCC
Confidence 6 245677889999999999999210 12355678999999999
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
.......
T Consensus 160 ~~~~~~~ 166 (226)
T 3m33_A 160 DIVAEDH 166 (226)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 9887644
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-16 Score=132.57 Aligned_cols=123 Identities=12% Similarity=0.209 Sum_probs=100.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+++....+ .++.+.++|+.+. .+++||+|++
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~------~~~~fD~i~~ 131 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHKL---GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD------VDGKFDLIVA 131 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT------CCSCEEEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc------CCCCceEEEE
Confidence 789999999999999998873 44599999999999999999877544 3499999998742 2578999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
...+++ ...+++++.++|+|||++++.++.. .+.+++..+++++||
T Consensus 132 ~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~~-----------------------------~~~~~~~~~~~~~Gf 177 (205)
T 3grz_A 132 NILAEI-----LLDLIPQLDSHLNEDGQVIFSGIDY-----------------------------LQLPKIEQALAENSF 177 (205)
T ss_dssp ESCHHH-----HHHHGGGSGGGEEEEEEEEEEEEEG-----------------------------GGHHHHHHHHHHTTE
T ss_pred CCcHHH-----HHHHHHHHHHhcCCCCEEEEEecCc-----------------------------ccHHHHHHHHHHcCC
Confidence 876654 4788999999999999999975432 246778999999999
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
.++....
T Consensus 178 ~~~~~~~ 184 (205)
T 3grz_A 178 QIDLKMR 184 (205)
T ss_dssp EEEEEEE
T ss_pred ceEEeec
Confidence 9887643
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=137.94 Aligned_cols=108 Identities=15% Similarity=0.299 Sum_probs=87.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe-
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL- 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 186 (352)
+.+|||||||+|.++..+++. ...+|+|+|+|+.|++.|+++....+.++.++++|+.+. ..++++++||+|++
T Consensus 61 ~~~vLDiGcGtG~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~fD~V~~d 135 (236)
T 1zx0_A 61 GGRVLEVGFGMAIAASKVQEA---PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV--APTLPDGHFDGILYD 135 (236)
T ss_dssp CEEEEEECCTTSHHHHHHHTS---CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH--GGGSCTTCEEEEEEC
T ss_pred CCeEEEEeccCCHHHHHHHhc---CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHh--hcccCCCceEEEEEC
Confidence 789999999999999999763 334899999999999999998876667899999998742 11566789999999
Q ss_pred hhhh--hccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 187 IFVL--DAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 187 ~~~l--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.+.+ +.....+...++++++++|||||+|++.++
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 4442 222335667889999999999999998654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=133.86 Aligned_cols=108 Identities=14% Similarity=0.228 Sum_probs=85.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||||||+|.++..+++.. ++.+++|+|+|+.|++.|++++...+ .++.++++|+... ...+++++||.|++
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l--~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQN--PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL--TDVFEPGEVKRVYL 114 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHC--TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH--HHHCCTTSCCEEEE
T ss_pred CceEEEEecCCCHHHHHHHHHC--CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHH--HhhcCcCCcCEEEE
Confidence 6789999999999999999976 78899999999999999999876543 5799999998741 11145788999987
Q ss_pred hhhhhccChh------HHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAINPN------KMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+...+.... ....+++++.++|+|||.|++.+
T Consensus 115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 6543222100 13678999999999999999975
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=147.54 Aligned_cols=158 Identities=10% Similarity=0.127 Sum_probs=111.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-------CCCceEEEEecCCCCCCCCCCCCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-------KPDRCHAFVCDVTSEDWNPPFAPES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~v~~~~~d~~~~~~~~~~~~~~ 180 (352)
+.+|||||||+|.++..+++... +..+|+|+|+|+.|++.|++++.. ...++.++++|+.+ +++.+++
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~-p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d----Lp~~d~s 796 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPT-SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE----FDSRLHD 796 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCC-CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS----CCTTSCS
T ss_pred CCEEEEECCCCCHHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh----CCcccCC
Confidence 78999999999999999998542 336999999999999999885431 22579999999984 5556789
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhh-cC--ccccC--ceeecCCCeeeeccCHH
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFK-KG--RCLQD--NFYARGDGTLVYFFTRE 255 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~~~ 255 (352)
||+|++..+++|+++.....+++++.++|||| .+++.+++......+... .. ..... .........+...++.+
T Consensus 797 FDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTRe 875 (950)
T 3htx_A 797 VDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEWTRE 875 (950)
T ss_dssp CCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSCSCCBCHH
T ss_pred eeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCcceeecHH
Confidence 99999999999997767778999999999999 888877654322111100 00 00000 00011122333457888
Q ss_pred HHHH----HHHhCCCceEEe
Q psy11741 256 EVKT----MFESAGFVEKQN 271 (352)
Q Consensus 256 ~~~~----ll~~~Gf~~~~~ 271 (352)
++.. +.++.||.+.-.
T Consensus 876 EFr~Wae~LAer~GYsVefv 895 (950)
T 3htx_A 876 QFNQWASKLGKRHNYSVEFS 895 (950)
T ss_dssp HHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHhcCcEEEEE
Confidence 8877 677889977544
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=131.23 Aligned_cols=108 Identities=16% Similarity=0.227 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|+++....+ .++++.+.|+.... .+.+++||+|+
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~----~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~---~~~~~~fD~v~ 94 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAG----LSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD---HYVREPIRAAI 94 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHT----TSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG---GTCCSCEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHH----hCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH---hhccCCcCEEE
Confidence 378999999999999999998 46799999999999999999876533 67899987765311 13367899998
Q ss_pred ehh-hhhc----c--ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIF-VLDA----I--NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~-~l~~----~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+.. .+++ + .+++...+++++.++|||||.+++..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 95 FNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred EeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 863 2221 0 2366778899999999999999997654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-16 Score=133.55 Aligned_cols=146 Identities=10% Similarity=0.036 Sum_probs=97.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHH----HhccccC-CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNIL----KEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a----~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+|||+|||+|.++..+++.. ++.+|+|+|+|+.|++.+ +++.... ..++.+.++|+.+ +++++++ |
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~----l~~~~~~-d 100 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQN--PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER----LPPLSGV-G 100 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHC--TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT----CCSCCCE-E
T ss_pred CCEEEEecCCCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh----CCCCCCC-C
Confidence 7899999999999999999976 789999999999988863 3333222 2479999999984 4455555 6
Q ss_pred EEEe---hhhhh--ccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHH
Q psy11741 183 IVLL---IFVLD--AINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEV 257 (352)
Q Consensus 183 ~V~~---~~~l~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (352)
.|++ ...++ |+ .+...++++++++|||||.+++........... .... ........+..+.+
T Consensus 101 ~v~~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~~~~l 167 (218)
T 3mq2_A 101 ELHVLMPWGSLLRGVL--GSSPEMLRGMAAVCRPGASFLVALNLHAWRPSV-----PEVG------EHPEPTPDSADEWL 167 (218)
T ss_dssp EEEEESCCHHHHHHHH--TSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBC-----GGGT------TCCCCCHHHHHHHH
T ss_pred EEEEEccchhhhhhhh--ccHHHHHHHHHHHcCCCcEEEEEeccccccccc-----cccc------cCCccchHHHHHHH
Confidence 6553 23332 55 455889999999999999999954221110000 0000 00001111234558
Q ss_pred HHHHHhCCCceEEeee
Q psy11741 258 KTMFESAGFVEKQNLI 273 (352)
Q Consensus 258 ~~ll~~~Gf~~~~~~~ 273 (352)
..+++++||.+.....
T Consensus 168 ~~~l~~aGf~i~~~~~ 183 (218)
T 3mq2_A 168 APRYAEAGWKLADCRY 183 (218)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHcCCCceeeec
Confidence 8899999999987654
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-15 Score=136.91 Aligned_cols=151 Identities=19% Similarity=0.217 Sum_probs=113.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+|||||||+|.++..+++++ |+.++++.|. |.+++.|+++... ...+++++.+|+.+. + ...+|+|++
T Consensus 180 ~~~v~DvGgG~G~~~~~l~~~~--p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~----~--~~~~D~~~~ 250 (353)
T 4a6d_A 180 FPLMCDLGGGAGALAKECMSLY--PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKD----P--LPEADLYIL 250 (353)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC--SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTS----C--CCCCSEEEE
T ss_pred CCeEEeeCCCCCHHHHHHHHhC--CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccC----C--CCCceEEEe
Confidence 6799999999999999999988 8899999998 7899999987654 347899999998742 2 235799999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhh-HhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQ-LRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
..++|++++++...+|++++++|+|||.+++.+...++... .... ....-.......+ ..++.+++..+++++|
T Consensus 251 ~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~--~~~dl~ml~~~~g---~ert~~e~~~ll~~AG 325 (353)
T 4a6d_A 251 ARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLT--QLYSLNMLVQTEG---QERTPTHYHMLLSSAG 325 (353)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHH--HHHHHHHHHSSSC---CCCCHHHHHHHHHHHT
T ss_pred eeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHH--HHHHHHHHHhCCC---cCCCHHHHHHHHHHCC
Confidence 99999998888899999999999999999998764332100 0000 0000000001111 2368999999999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|+.+++.
T Consensus 326 f~~v~v~ 332 (353)
T 4a6d_A 326 FRDFQFK 332 (353)
T ss_dssp CEEEEEE
T ss_pred CceEEEE
Confidence 9998764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=133.05 Aligned_cols=103 Identities=14% Similarity=0.174 Sum_probs=85.0
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||||||+|.++..++... ++.+|+|+|+|+.|++.|++++...+ .+++++++|+.+ ++ +++||+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~--~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~----l~--d~~FDv 191 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHV--YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV----ID--GLEFDV 191 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHT--TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG----GG--GCCCSE
T ss_pred CCCcCEEEEECCCccHHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh----CC--CCCcCE
Confidence 4458999999999998775544443 68899999999999999999876533 689999999874 33 689999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|++... . ++...+++++.++|||||+|++...
T Consensus 192 V~~~a~---~--~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 192 LMVAAL---A--EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEECTT---C--SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEECCC---c--cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 998554 3 6778999999999999999999764
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=125.12 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=95.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+ +|+|+|+|+.|++. ..++.+.++|+.+ ++++++||+|+++
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~----~~-~v~gvD~s~~~~~~--------~~~~~~~~~d~~~-----~~~~~~fD~i~~n 85 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRK----RN-TVVSTDLNIRALES--------HRGGNLVRADLLC-----SINQESVDVVVFN 85 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTT----TS-EEEEEESCHHHHHT--------CSSSCEEECSTTT-----TBCGGGCSEEEEC
T ss_pred CCeEEEeccCccHHHHHHHh----cC-cEEEEECCHHHHhc--------ccCCeEEECChhh-----hcccCCCCEEEEC
Confidence 67999999999999999988 55 99999999999987 2468899999874 2345899999998
Q ss_pred hhhhccChh-------HHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHH
Q psy11741 188 FVLDAINPN-------KMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 188 ~~l~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (352)
..+++.+.. +...+++++.+.| |||.+++..... .+.+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~ 135 (170)
T 3q87_B 86 PPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLAR 135 (170)
T ss_dssp CCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHH
T ss_pred CCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHH
Confidence 777754322 4467888888888 999999975321 357789999
Q ss_pred HHhCCCceEEeee
Q psy11741 261 FESAGFVEKQNLI 273 (352)
Q Consensus 261 l~~~Gf~~~~~~~ 273 (352)
++++||..+....
T Consensus 136 l~~~gf~~~~~~~ 148 (170)
T 3q87_B 136 LEERGYGTRILKV 148 (170)
T ss_dssp HHHTTCEEEEEEE
T ss_pred HHHCCCcEEEEEe
Confidence 9999999887654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=127.37 Aligned_cols=125 Identities=10% Similarity=0.055 Sum_probs=99.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-C-ceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-D-RCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~-~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|++++...+ . ++.++.+|+.+. ++ ...+||+|
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~----~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~---~~-~~~~~D~v 126 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCL----AGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA---LA-DLPLPEAV 126 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG---GT-TSCCCSEE
T ss_pred CCCEEEEecCCCCHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh---cc-cCCCCCEE
Confidence 378999999999999999998 46799999999999999999876543 3 799999998752 22 23579999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++...+ +.. +++++.++|||||++++..... -+..++..++++.
T Consensus 127 ~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~l~~~ 170 (204)
T 3njr_A 127 FIGGGG------SQA-LYDRLWEWLAPGTRIVANAVTL-----------------------------ESETLLTQLHARH 170 (204)
T ss_dssp EECSCC------CHH-HHHHHHHHSCTTCEEEEEECSH-----------------------------HHHHHHHHHHHHH
T ss_pred EECCcc------cHH-HHHHHHHhcCCCcEEEEEecCc-----------------------------ccHHHHHHHHHhC
Confidence 986632 344 9999999999999999976542 2356678889999
Q ss_pred CCceEEeeeee
Q psy11741 265 GFVEKQNLIDR 275 (352)
Q Consensus 265 Gf~~~~~~~~~ 275 (352)
|+.+.......
T Consensus 171 g~~i~~i~~~~ 181 (204)
T 3njr_A 171 GGQLLRIDIAQ 181 (204)
T ss_dssp CSEEEEEEEEE
T ss_pred CCcEEEEEeec
Confidence 98888765533
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=127.66 Aligned_cols=153 Identities=12% Similarity=0.138 Sum_probs=100.8
Q ss_pred hccccCCCHHHHHHhhHHhhhh--HHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHH
Q psy11741 47 NNSVLQIDKNLIQTLNEDVAKN--WDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFP 124 (352)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~y--w~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~ 124 (352)
......+++...+.+....... |+.+|......- ....+....+..+.... ..++.+|||+|||+|.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~------~~~~~~vLDiG~G~G~~~~~ 82 (207)
T 1jsx_A 10 KDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVRD-PNEMLVRHILDSIVVAP------YLQGERFIDVGTGPGLPGIP 82 (207)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHGG------GCCSSEEEEETCTTTTTHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHhhhhhhh------hcCCCeEEEECCCCCHHHHH
Confidence 3444566666666666554443 455554322110 11112222233222211 11267999999999999999
Q ss_pred HHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHH
Q psy11741 125 IVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVIN 203 (352)
Q Consensus 125 l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~ 203 (352)
++... ++.+++|+|+|+.+++.|+++....+ .++.+..+|+.+. + +.++||+|++.. + .++..+++
T Consensus 83 l~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~-~~~~~D~i~~~~----~--~~~~~~l~ 149 (207)
T 1jsx_A 83 LSIVR--PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF----P-SEPPFDGVISRA----F--ASLNDMVS 149 (207)
T ss_dssp HHHHC--TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS----C-CCSCEEEEECSC----S--SSHHHHHH
T ss_pred HHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhC----C-ccCCcCEEEEec----c--CCHHHHHH
Confidence 99876 67899999999999999999876543 3599999998742 2 357899999854 2 45678999
Q ss_pred HHHHhcCCCEEEEEEe
Q psy11741 204 QVYKYLKPGGMVLFRD 219 (352)
Q Consensus 204 ~~~~~LkpgG~l~~~~ 219 (352)
.+.++|+|||.+++..
T Consensus 150 ~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 150 WCHHLPGEQGRFYALK 165 (207)
T ss_dssp HHTTSEEEEEEEEEEE
T ss_pred HHHHhcCCCcEEEEEe
Confidence 9999999999999963
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-16 Score=132.58 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=94.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCC-HHHHHHH---HhccccCC-CceEEEEecCCCCCCCCCCC-CCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFS-ENAVNIL---KEHEEYKP-DRCHAFVCDVTSEDWNPPFA-PESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s-~~~l~~a---~~~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~f 181 (352)
+.+|||||||+|.++..+++.. ++.+|+|+|+| +.|++.| +++....+ .++.+.++|+... +.. .+.+
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~--~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l----~~~~~d~v 98 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAIND--QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL----PFELKNIA 98 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTC--TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC----CGGGTTCE
T ss_pred CCEEEEEeccCcHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh----hhhccCeE
Confidence 7799999999999999998654 88999999999 7777776 77765533 5799999998743 211 2445
Q ss_pred eEEEehhhhhcc---ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHH
Q psy11741 182 DIVLLIFVLDAI---NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVK 258 (352)
Q Consensus 182 D~V~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (352)
|.|++.+...+. ...+...++++++++|||||.+++............+... ....... .++..+++.
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~el~ 169 (225)
T 3p2e_A 99 DSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKR--------GLPLLSK-AYFLSEQYK 169 (225)
T ss_dssp EEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC----------------------CCH-HHHHSHHHH
T ss_pred EEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhc--------CCCCCCh-hhcchHHHH
Confidence 555554322111 0012356899999999999999983321111100000000 0000001 112223599
Q ss_pred HHHHhCCCceEEeee
Q psy11741 259 TMFESAGFVEKQNLI 273 (352)
Q Consensus 259 ~ll~~~Gf~~~~~~~ 273 (352)
.+++++||.+.....
T Consensus 170 ~~l~~aGf~v~~~~~ 184 (225)
T 3p2e_A 170 AELSNSGFRIDDVKE 184 (225)
T ss_dssp HHHHHHTCEEEEEEE
T ss_pred HHHHHcCCCeeeeee
Confidence 999999999887654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=129.63 Aligned_cols=110 Identities=20% Similarity=0.323 Sum_probs=91.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++ .+++|+|+|+. ++.+.++|+.+ +++++++||+|++.
T Consensus 68 ~~~vLDiG~G~G~~~~~l~-------~~v~~~D~s~~--------------~~~~~~~d~~~----~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIR-------NPVHCFDLASL--------------DPRVTVCDMAQ----VPLEDESVDVAVFC 122 (215)
T ss_dssp TSCEEEETCTTCHHHHHCC-------SCEEEEESSCS--------------STTEEESCTTS----CSCCTTCEEEEEEE
T ss_pred CCeEEEECCcCCHHHHHhh-------ccEEEEeCCCC--------------CceEEEecccc----CCCCCCCEeEEEEe
Confidence 6799999999999887763 37999999986 36788899874 45667899999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.++|+ .+...+++++.++|+|||.+++.++.. .+.+.+++..+++++||.
T Consensus 123 ~~l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~---------------------------~~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 123 LSLMG---TNIRDFLEEANRVLKPGGLLKVAEVSS---------------------------RFEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp SCCCS---SCHHHHHHHHHHHEEEEEEEEEEECGG---------------------------GCSCHHHHHHHHHHTTEE
T ss_pred hhccc---cCHHHHHHHHHHhCCCCeEEEEEEcCC---------------------------CCCCHHHHHHHHHHCCCE
Confidence 99863 578899999999999999999986432 113789999999999999
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
++...
T Consensus 173 ~~~~~ 177 (215)
T 2zfu_A 173 IVSKD 177 (215)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88753
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-16 Score=135.60 Aligned_cols=171 Identities=15% Similarity=0.190 Sum_probs=114.4
Q ss_pred chhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCc--cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-Cc
Q psy11741 83 DRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGV--GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DR 159 (352)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~--G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~ 159 (352)
++.|+.+.+..+.... ...+|||||||+ +..+..+++... ++.+|+++|.|+.|++.|++++...+ .+
T Consensus 62 nr~fl~rav~~l~~~~--------g~~q~LDLGcG~pT~~~~~~la~~~~-P~arVv~VD~sp~mLa~Ar~~l~~~~~~~ 132 (277)
T 3giw_A 62 NRDWMNRAVAHLAKEA--------GIRQFLDIGTGIPTSPNLHEIAQSVA-PESRVVYVDNDPIVLTLSQGLLASTPEGR 132 (277)
T ss_dssp HHHHHHHHHHHHHHTS--------CCCEEEEESCCSCCSSCHHHHHHHHC-TTCEEEEEECCHHHHHTTHHHHCCCSSSE
T ss_pred HHHHHHHHHHHhcccc--------CCCEEEEeCCCCCcccHHHHHHHHHC-CCCEEEEEeCChHHHHHHHHHhccCCCCc
Confidence 4555555555554321 146899999997 445566665443 78899999999999999999876432 47
Q ss_pred eEEEEecCCCCCCCC--CCCCCcce-----EEEehhhhhccChhH-HHHHHHHHHHhcCCCEEEEEEeCCCCch-hhHhh
Q psy11741 160 CHAFVCDVTSEDWNP--PFAPESLD-----IVLLIFVLDAINPNK-MQHVINQVYKYLKPGGMVLFRDYGRYDL-VQLRF 230 (352)
Q Consensus 160 v~~~~~d~~~~~~~~--~~~~~~fD-----~V~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~ 230 (352)
+.++++|+.+....+ +...+.|| .|+++.+|||+++.+ +..+++++++.|+|||+|++.+...... .....
T Consensus 133 ~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~ 212 (277)
T 3giw_A 133 TAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGR 212 (277)
T ss_dssp EEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHH
T ss_pred EEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHH
Confidence 999999998531000 10023344 588899999996544 7899999999999999999987765321 11100
Q ss_pred hcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 231 KKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
.. ..+.. .+....+.+.+++..+|. ||+.++-
T Consensus 213 ~~------~~~~~-~g~p~~~rs~~ei~~~f~--GlelveP 244 (277)
T 3giw_A 213 VA------REYAA-RNMPMRLRTHAEAEEFFE--GLELVEP 244 (277)
T ss_dssp HH------HHHHH-TTCCCCCCCHHHHHHTTT--TSEECTT
T ss_pred HH------HHHHh-cCCCCccCCHHHHHHHhC--CCcccCC
Confidence 00 00111 122345689999999994 9997653
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-16 Score=142.00 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=107.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|||||||+|.++..+++.+ ++.+++++|+ +.+++.|++. .++++..+|+.+ +++ .||+|++.
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~p--~~D~v~~~ 253 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETF--PKLKCIVFDR-PQVVENLSGS-----NNLTYVGGDMFT-----SIP--NADAVLLK 253 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC--TTCEEEEEEC-HHHHTTCCCB-----TTEEEEECCTTT-----CCC--CCSEEEEE
T ss_pred CceEEEeCCCccHHHHHHHHHC--CCCeEEEeeC-HHHHhhcccC-----CCcEEEeccccC-----CCC--CccEEEee
Confidence 6799999999999999999987 7889999999 9999887653 349999999864 222 39999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCC---CEEEEEEeCCCCchhh----HhhhcCccccCceeecCCCeeeeccCHHHHHHH
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKP---GGMVLFRDYGRYDLVQ----LRFKKGRCLQDNFYARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (352)
.++||++..+...+|++++++||| ||++++.+...+.... ..... .......... ...++.+++..+
T Consensus 254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~--~~d~~~~~~~----g~~~t~~e~~~l 327 (352)
T 1fp2_A 254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKL--LMDVNMACLN----GKERNEEEWKKL 327 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHH--HHHHHGGGGT----CCCEEHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHh--hccHHHHhcc----CCCCCHHHHHHH
Confidence 999999766667999999999999 9999998764332110 00000 0000000001 123689999999
Q ss_pred HHhCCCceEEeee
Q psy11741 261 FESAGFVEKQNLI 273 (352)
Q Consensus 261 l~~~Gf~~~~~~~ 273 (352)
++++||+++....
T Consensus 328 l~~aGf~~~~~~~ 340 (352)
T 1fp2_A 328 FIEAGFQHYKISP 340 (352)
T ss_dssp HHHTTCCEEEEEE
T ss_pred HHHCCCCeeEEEe
Confidence 9999999887643
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=133.33 Aligned_cols=128 Identities=19% Similarity=0.281 Sum_probs=102.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++... ++.+|+|+|+|+.+++.|+++....+ .++.+.++|+.+. +++++||+|++
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-----~~~~~fD~Iv~ 182 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASER--PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-----LAGQQFAMIVS 182 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHC--TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-----GTTCCEEEEEE
T ss_pred CCEEEEecCCccHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-----cccCCccEEEE
Confidence 6799999999999999999876 77899999999999999999976533 4699999998742 23578999999
Q ss_pred hh-------------hhhccC----------hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeec
Q psy11741 187 IF-------------VLDAIN----------PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYAR 243 (352)
Q Consensus 187 ~~-------------~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
+. +++|.+ ......+++.+.++|+|||++++...
T Consensus 183 npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----------------------- 239 (276)
T 2b3t_A 183 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----------------------- 239 (276)
T ss_dssp CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------------------
T ss_pred CCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------------
Confidence 72 333221 14668899999999999999999621
Q ss_pred CCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 244 GDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 244 ~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
..+.+++.++++++||..+...
T Consensus 240 -------~~~~~~~~~~l~~~Gf~~v~~~ 261 (276)
T 2b3t_A 240 -------WQQGEAVRQAFILAGYHDVETC 261 (276)
T ss_dssp -------SSCHHHHHHHHHHTTCTTCCEE
T ss_pred -------chHHHHHHHHHHHCCCcEEEEE
Confidence 1357789999999999877654
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-16 Score=144.92 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=107.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||||||+|.++..+++.+ ++.+++++|+ +.+++.|++. .+++++.+|+.+ +++. ||+|++
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~~~--~D~v~~ 273 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKY--PLIKGINFDL-PQVIENAPPL-----SGIEHVGGDMFA-----SVPQ--GDAMIL 273 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC--TTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-----CCCC--EEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHHC--CCCeEEEeCh-HHHHHhhhhc-----CCCEEEeCCccc-----CCCC--CCEEEE
Confidence 36799999999999999999987 7789999999 9999877653 459999999874 2333 999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhh-h-cCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF-K-KGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
..++||++.++...+|++++++|+|||++++.+...+....... . .............. ...++.+++..+++++
T Consensus 274 ~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~t~~e~~~ll~~a 350 (372)
T 1fp1_D 274 KAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVG---GRERTEKQYEKLSKLS 350 (372)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHS---CCCEEHHHHHHHHHHT
T ss_pred ecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccC---CccCCHHHHHHHHHHC
Confidence 99999997666679999999999999999998653321100000 0 00000000000000 1236899999999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||+++....
T Consensus 351 Gf~~~~~~~ 359 (372)
T 1fp1_D 351 GFSKFQVAC 359 (372)
T ss_dssp TCSEEEEEE
T ss_pred CCceEEEEE
Confidence 999987643
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-15 Score=128.48 Aligned_cols=137 Identities=16% Similarity=0.303 Sum_probs=98.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|++++... .++.++.+|+.......++. ++||+|+
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~--~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~- 148 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIA--DKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIV-EKVDVIY- 148 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHT--TTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEE-
T ss_pred CCCEEEEEcccCCHHHHHHHHHc--CCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCcccccccC-ccEEEEE-
Confidence 47899999999999999999975 3468999999999999999887654 78999999987421113444 7899998
Q ss_pred hhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 187 IFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 187 ~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+++ .+.....+++++.++|+|||.+++. +..... . .... ...+..+++. +++++|
T Consensus 149 ----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~------~----------~~~~--~~~~~~~~l~-~l~~~G 204 (230)
T 1fbn_A 149 ----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSI------D----------VTKD--PKEIFKEQKE-ILEAGG 204 (230)
T ss_dssp ----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGT------C----------SSSC--HHHHHHHHHH-HHHHHT
T ss_pred ----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCC------C----------CCCC--HHHhhHHHHH-HHHHCC
Confidence 333 2344577899999999999999996 211000 0 0000 0012346777 889999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|..+...
T Consensus 205 f~~~~~~ 211 (230)
T 1fbn_A 205 FKIVDEV 211 (230)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 9887653
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-16 Score=129.00 Aligned_cols=103 Identities=14% Similarity=0.201 Sum_probs=85.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++... |+.+|+|+|+|+.|++.+++++...+....+...|... . .+.++||+|++.
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~--p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~---~--~~~~~~DvVLa~ 122 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNEN--EKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKES---D--VYKGTYDVVFLL 122 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSS--CCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHH---H--HTTSEEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccc---c--CCCCCcChhhHh
Confidence 6799999999999999998865 77899999999999999999987655433344466542 1 346889999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.++|++ ++....+.++.+.|+|||+++--.
T Consensus 123 k~LHlL--~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 123 KMLPVL--KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp TCHHHH--HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hHHHhh--hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 999999 778888889999999999888753
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-16 Score=133.03 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=87.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||||||+|.++..+++.. ++.+|+|+|+|+.|++.|++++...+ .++.++++|+.+.. ...+++++||.|++
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~--p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l-~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDR--PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVL-HKMIPDNSLRMVQL 111 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHC--TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHH-HHHSCTTCEEEEEE
T ss_pred CCeEEEEeeeChHHHHHHHHHC--CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHH-HHHcCCCChheEEE
Confidence 6799999999999999999876 78899999999999999999876543 57999999987410 10145789999998
Q ss_pred hhhhhccChhHH------HHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAINPNKM------QHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+...+...... ..++++++++|||||+|++.+..
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~ 152 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW 152 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence 754433321221 25999999999999999997643
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=133.06 Aligned_cols=122 Identities=14% Similarity=0.181 Sum_probs=98.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+..+.+..+|+.+. +++++||+|+++
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~----g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-----~~~~~fD~Vv~n 191 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKL----GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-----LPFGPFDLLVAN 191 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHT----TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-----GGGCCEEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHh----CCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-----CcCCCCCEEEEC
Confidence 789999999999999998883 44999999999999999998776544488888887641 235789999986
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
...+ ....++..+.++|+|||++++..+.. .+.+++...++++||.
T Consensus 192 ~~~~-----~~~~~l~~~~~~LkpgG~lils~~~~-----------------------------~~~~~v~~~l~~~Gf~ 237 (254)
T 2nxc_A 192 LYAE-----LHAALAPRYREALVPGGRALLTGILK-----------------------------DRAPLVREAMAGAGFR 237 (254)
T ss_dssp CCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEG-----------------------------GGHHHHHHHHHHTTCE
T ss_pred CcHH-----HHHHHHHHHHHHcCCCCEEEEEeecc-----------------------------CCHHHHHHHHHHCCCE
Confidence 5443 45788999999999999999975321 2467899999999999
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
++...
T Consensus 238 ~~~~~ 242 (254)
T 2nxc_A 238 PLEEA 242 (254)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88764
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-15 Score=127.85 Aligned_cols=130 Identities=14% Similarity=0.090 Sum_probs=99.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||||||+|..+..++... ++.+|+|+|+|+.+++.|+++....+ .+++++++|+.+... .+..+++||+|+
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~-~~~~~~~fD~I~ 156 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVR--PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAR-EAGHREAYARAV 156 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHC--TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTT-STTTTTCEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhc-ccccCCCceEEE
Confidence 47899999999999999999876 78899999999999999999877643 469999999874321 011247899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+ .++..+++.+.++|||||++++....... -...++...++..|
T Consensus 157 s~a~------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G 203 (249)
T 3g89_A 157 ARAV------APLCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLG 203 (249)
T ss_dssp EESS------CCHHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHT
T ss_pred ECCc------CCHHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcC
Confidence 9653 35578999999999999999885422110 11234666778889
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|.+....
T Consensus 204 ~~~~~~~ 210 (249)
T 3g89_A 204 GRLGEVL 210 (249)
T ss_dssp EEEEEEE
T ss_pred CeEEEEE
Confidence 9887754
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=126.92 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||+|||+|..+..+++.. ++.+|+|+|+|+.|++.+.+.++.. .++.++.+|+.......++ .++||+|+
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~--~~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~-~~~fD~V~ 131 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIV--DEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGI-VEKVDLIY 131 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHT--TTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTT-CCCEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhccc-ccceeEEE
Confidence 347899999999999999999876 3458999999999876655544322 4688888888752111233 37899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+.. ..+.+...++++++++|||||.|++..
T Consensus 132 ~~~----~~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 132 QDI----AQKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp ECC----CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eec----cChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 862 122455567999999999999999973
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-15 Score=125.99 Aligned_cols=110 Identities=16% Similarity=0.258 Sum_probs=88.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..+++.+. +..+|+|+|+|+.+++.|++++...+ .++.++++|+.+.. ...+++||+|+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~v~ 98 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVG-ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD---KYIDCPVKAVM 98 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHC-TTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG---GTCCSCEEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh---hhccCCceEEE
Confidence 78999999999999999999763 45699999999999999999977643 47999999987421 13457899999
Q ss_pred ehhhhh-------ccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLD-------AINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~-------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+...+. .....+...+++++.++|+|||++++..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 876441 112346678999999999999999998654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.5e-15 Score=122.52 Aligned_cols=106 Identities=16% Similarity=0.262 Sum_probs=88.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-Cc--eEEEEecCCCCCCCCCCCCCcceE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DR--CHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~--v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++....+ .+ +.+..+|+.+. .++++||+
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~ 122 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADE----VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-----VKDRKYNK 122 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-----CTTSCEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHc----CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-----cccCCceE
Confidence 4789999999999999999884 5699999999999999999876543 33 99999998752 23678999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|++...+++ ...+...+++++.++|+|||.+++.....
T Consensus 123 v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 123 IITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp EEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred EEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 999887765 23678899999999999999999986653
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=129.12 Aligned_cols=109 Identities=13% Similarity=0.241 Sum_probs=83.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-------CCCceEEEEecCCCCCCCCC--CCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-------KPDRCHAFVCDVTSEDWNPP--FAP 178 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~v~~~~~d~~~~~~~~~--~~~ 178 (352)
+.+|||||||+|.++..+++.. ++..++|+|+|+.|++.|++++.. ...++.++++|+.+ .++ +++
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~---~l~~~~~~ 121 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLF--PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMK---HLPNFFYK 121 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGS--TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTT---CHHHHCCT
T ss_pred CCeEEEEccCCcHHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHH---hhhhhCCC
Confidence 6789999999999999999876 778999999999999999876531 23679999999874 233 567
Q ss_pred CcceEEEehhhhhccChh------HHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 179 ESLDIVLLIFVLDAINPN------KMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++||.|++.+...+.... ....+++++.++|||||.|++.+..
T Consensus 122 ~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 122 GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp TCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 899999875432222000 0147999999999999999997543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.5e-15 Score=135.32 Aligned_cols=107 Identities=20% Similarity=0.286 Sum_probs=91.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.|++++...+.+++++++|+.+. ..++++||+|++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~----~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~----~~~~~~fD~Ii~ 304 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLAR----MGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEA----LTEEARFDIIVT 304 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHH----TTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT----SCTTCCEEEEEE
T ss_pred CCCEEEEEeeeCCHHHHHHHH----cCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhc----cccCCCeEEEEE
Confidence 377999999999999999998 566999999999999999999877666689999999753 233579999999
Q ss_pred hhhhhc---cChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDA---INPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+..+++ ...++...+++++.++|+|||.+++....
T Consensus 305 npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 305 NPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred CCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 988887 33478889999999999999999997543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-16 Score=133.78 Aligned_cols=130 Identities=17% Similarity=0.207 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCC-----Ccc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAP-----ESL 181 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-----~~f 181 (352)
++.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.|+++....+.++.+.++|+.+ ++++ ++|
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~~~~f 102 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALAC--PGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-----WLIERAERGRPW 102 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHC--TTEEEEEEECC-------------------CCHHHHHH-----HHHHHHHTTCCB
T ss_pred CCCEEEEecCCHhHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-----hhhhhhhccCcc
Confidence 37899999999999999999976 68899999999999999999877644478888898874 2233 899
Q ss_pred eEEEehhhh------hccChh------------------HHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCcccc
Q psy11741 182 DIVLLIFVL------DAINPN------------------KMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQ 237 (352)
Q Consensus 182 D~V~~~~~l------~~~~~~------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 237 (352)
|+|+++..+ ++++.. ....+++++.++|||||++++.+...
T Consensus 103 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------- 167 (215)
T 4dzr_A 103 HAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH--------------- 167 (215)
T ss_dssp SEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT---------------
T ss_pred cEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC---------------
Confidence 999995332 222111 12788899999999999944433321
Q ss_pred CceeecCCCeeeeccCHHHHHHHHH--hCCCceEEee
Q psy11741 238 DNFYARGDGTLVYFFTREEVKTMFE--SAGFVEKQNL 272 (352)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~ll~--~~Gf~~~~~~ 272 (352)
...+.+..+++ +.||..+...
T Consensus 168 --------------~~~~~~~~~l~~~~~gf~~~~~~ 190 (215)
T 4dzr_A 168 --------------NQADEVARLFAPWRERGFRVRKV 190 (215)
T ss_dssp --------------SCHHHHHHHTGGGGGGTEECCEE
T ss_pred --------------ccHHHHHHHHHHhhcCCceEEEE
Confidence 34667888888 8999776653
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=125.82 Aligned_cols=109 Identities=9% Similarity=0.079 Sum_probs=88.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++.. ...+|+|+|+|+.|++.|++++...+ .+++++++|+.+.. ..+++++||+|++
T Consensus 45 ~~~vLDlgcG~G~~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~fD~i~~ 119 (189)
T 3p9n_A 45 GLAVLDLYAGSGALGLEALSR---GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVV--AAGTTSPVDLVLA 119 (189)
T ss_dssp TCEEEEETCTTCHHHHHHHHT---TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHH--HHCCSSCCSEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHC---CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHH--hhccCCCccEEEE
Confidence 789999999999999987773 44589999999999999999876543 57999999987421 1123678999999
Q ss_pred hhhhhccChhHHHHHHHHHHH--hcCCCEEEEEEeCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYK--YLKPGGMVLFRDYGR 222 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~ 222 (352)
...+++. .++...+++.+.+ +|+|||++++.....
T Consensus 120 ~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 120 DPPYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 8776543 3678899999999 999999999976543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-15 Score=131.74 Aligned_cols=126 Identities=15% Similarity=0.156 Sum_probs=100.5
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-C-CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-P-DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
..++.+|||+|||+|.++..+++... ++.+|+|+|+|+.+++.|+++.... + .++.+.++|+.+ ++++++||
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-----~~~~~~fD 181 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALN-GKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-----FISDQMYD 181 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHT-TSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-----CCCSCCEE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-----cCcCCCcc
Confidence 34578999999999999999998632 5779999999999999999987654 3 579999999874 23467899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
+|++ ++ .+...+++++.++|+|||++++.+... ...+++...++
T Consensus 182 ~Vi~-----~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~-----------------------------~~~~~~~~~l~ 225 (275)
T 1yb2_A 182 AVIA-----DI--PDPWNHVQKIASMMKPGSVATFYLPNF-----------------------------DQSEKTVLSLS 225 (275)
T ss_dssp EEEE-----CC--SCGGGSHHHHHHTEEEEEEEEEEESSH-----------------------------HHHHHHHHHSG
T ss_pred EEEE-----cC--cCHHHHHHHHHHHcCCCCEEEEEeCCH-----------------------------HHHHHHHHHHH
Confidence 9998 33 455689999999999999999976431 12456777788
Q ss_pred hCCCceEEee
Q psy11741 263 SAGFVEKQNL 272 (352)
Q Consensus 263 ~~Gf~~~~~~ 272 (352)
++||..++..
T Consensus 226 ~~Gf~~~~~~ 235 (275)
T 1yb2_A 226 ASGMHHLETV 235 (275)
T ss_dssp GGTEEEEEEE
T ss_pred HCCCeEEEEE
Confidence 8999887764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-15 Score=121.41 Aligned_cols=123 Identities=18% Similarity=0.233 Sum_probs=96.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++....+ .++.+..+|+.+. ++. .++||+|
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~-~~~~D~v 104 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGR----VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA---LCK-IPDIDIA 104 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH---HTT-SCCEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHh----cCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh---ccc-CCCCCEE
Confidence 3789999999999999999884 3699999999999999999876543 4789999988641 111 1589999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..++++ ...+++.+.++|+|||.+++..+.. .+..++...+++.
T Consensus 105 ~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~l~~~ 150 (192)
T 1l3i_A 105 VVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMECLRDL 150 (192)
T ss_dssp EESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHHHHHT
T ss_pred EECCchHH-----HHHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHHHHHC
Confidence 99876643 4788999999999999999975432 2356688899999
Q ss_pred CCceEEe
Q psy11741 265 GFVEKQN 271 (352)
Q Consensus 265 Gf~~~~~ 271 (352)
||.+...
T Consensus 151 g~~~~~~ 157 (192)
T 1l3i_A 151 GFDVNIT 157 (192)
T ss_dssp TCCCEEE
T ss_pred CCceEEE
Confidence 9955433
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=122.87 Aligned_cols=141 Identities=17% Similarity=0.176 Sum_probs=92.3
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
..++.+|||+|||+|.++..+++... +..+|+|+|+|+.|++...+.+.. ..++.++++|+....... ...++||+|
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~-~~G~V~avD~s~~~l~~l~~~a~~-r~nv~~i~~Da~~~~~~~-~~~~~~D~I 150 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIE-LNGKAYGVEFSPRVVRELLLVAQR-RPNIFPLLADARFPQSYK-SVVENVDVL 150 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHT-TTSEEEEEECCHHHHHHHHHHHHH-CTTEEEEECCTTCGGGTT-TTCCCEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhC-CCCEEEEEECcHHHHHHHHHHhhh-cCCeEEEEcccccchhhh-ccccceEEE
Confidence 44589999999999999999998765 566999999999987544333222 257999999987532111 124689999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++.... +.....++..+.++|||||.|++...... .... .+ ..-..++....++++
T Consensus 151 ~~d~a~----~~~~~il~~~~~~~LkpGG~lvisik~~~------------~d~t----~~----~~e~~~~~~~~L~~~ 206 (232)
T 3id6_C 151 YVDIAQ----PDQTDIAIYNAKFFLKVNGDMLLVIKARS------------IDVT----KD----PKEIYKTEVEKLENS 206 (232)
T ss_dssp EECCCC----TTHHHHHHHHHHHHEEEEEEEEEEEC-----------------------CC----SSSSTTHHHHHHHHT
T ss_pred EecCCC----hhHHHHHHHHHHHhCCCCeEEEEEEccCC------------cccC----CC----HHHHHHHHHHHHHHC
Confidence 987432 23333445566669999999999743211 0000 00 001123456677889
Q ss_pred CCceEEee
Q psy11741 265 GFVEKQNL 272 (352)
Q Consensus 265 Gf~~~~~~ 272 (352)
||++++..
T Consensus 207 gf~~~~~~ 214 (232)
T 3id6_C 207 NFETIQII 214 (232)
T ss_dssp TEEEEEEE
T ss_pred CCEEEEEe
Confidence 99988764
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=124.41 Aligned_cols=110 Identities=14% Similarity=0.162 Sum_probs=86.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCC--CCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNP--PFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~--~~~~~~fD~ 183 (352)
+.+|||+|||+|..+..+++.+. ++.+|+++|+|+.+++.|++++...+ .+++++++|+.+....+ ....++||+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQ-PGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSC-TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCEEEEECCCCCHHHHHHHHhCC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 67999999999999999999763 47899999999999999999876533 46999999975421111 112268999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|++....++. .....++..+ ++|+|||++++.+..
T Consensus 138 V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 138 VFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 9998776666 5566777777 999999999996543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-14 Score=125.23 Aligned_cols=99 Identities=23% Similarity=0.434 Sum_probs=83.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++.. ++.+++|+|+|+.+++.|+++. .++.+..+|+. .+++++++||+|++.
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~--~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~----~~~~~~~~fD~v~~~ 155 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADAL--PEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSH----RLPFSDTSMDAIIRI 155 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTC--TTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTT----SCSBCTTCEEEEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchh----hCCCCCCceeEEEEe
Confidence 7899999999999999999975 5779999999999999998874 45789999987 455667899999986
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCch
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 225 (352)
.+. ..++++.++|||||.+++.+++....
T Consensus 156 ~~~---------~~l~~~~~~L~pgG~l~~~~~~~~~~ 184 (269)
T 1p91_A 156 YAP---------CKAEELARVVKPGGWVITATPGPRHL 184 (269)
T ss_dssp SCC---------CCHHHHHHHEEEEEEEEEEEECTTTT
T ss_pred CCh---------hhHHHHHHhcCCCcEEEEEEcCHHHH
Confidence 542 24788999999999999988776543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=119.48 Aligned_cols=120 Identities=15% Similarity=0.258 Sum_probs=97.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++ ++.+++|+|+|+.+++.|+++....+ .++.+.++|+.+ ++++++||+|+
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~D~i~ 105 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAK----RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-----VLDKLEFNKAF 105 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHT----TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-----HGGGCCCSEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-----cccCCCCcEEE
Confidence 377999999999999999988 67799999999999999999876544 579999999874 23457899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+ .+...+++.+.++ |||.+++..... .+..++.+.++++|
T Consensus 106 ~~~~------~~~~~~l~~~~~~--~gG~l~~~~~~~-----------------------------~~~~~~~~~l~~~g 148 (183)
T 2yxd_A 106 IGGT------KNIEKIIEILDKK--KINHIVANTIVL-----------------------------ENAAKIINEFESRG 148 (183)
T ss_dssp ECSC------SCHHHHHHHHHHT--TCCEEEEEESCH-----------------------------HHHHHHHHHHHHTT
T ss_pred ECCc------ccHHHHHHHHhhC--CCCEEEEEeccc-----------------------------ccHHHHHHHHHHcC
Confidence 9876 4567888888888 999999986542 22456888999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|.+....
T Consensus 149 ~~~~~~~ 155 (183)
T 2yxd_A 149 YNVDAVN 155 (183)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 8776553
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=126.19 Aligned_cols=132 Identities=16% Similarity=0.157 Sum_probs=100.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++.. +. +|+|+|+++.+++.|++++...+ .++.++++|+.+.. ..+++++||+|
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~--~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~--~~~~~~~fD~I 123 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRT--KA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT--DLIPKERADIV 123 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTC--CC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGG--GTSCTTCEEEE
T ss_pred CCCEEEEcCCchhHHHHHHHHhc--CC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhh--hhhccCCccEE
Confidence 37899999999999999999864 33 99999999999999999987543 46999999998532 12346899999
Q ss_pred Eehhhhhcc------------------ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCC
Q psy11741 185 LLIFVLDAI------------------NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDG 246 (352)
Q Consensus 185 ~~~~~l~~~------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
+++-.+... ...+...+++.+.++|+|||++++....
T Consensus 124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------- 178 (259)
T 3lpm_A 124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP------------------------- 178 (259)
T ss_dssp EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-------------------------
T ss_pred EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-------------------------
Confidence 995332111 1145678999999999999999995321
Q ss_pred eeeeccCHHHHHHHHHhCCCceEEeee
Q psy11741 247 TLVYFFTREEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 247 ~~~~~~~~~~~~~ll~~~Gf~~~~~~~ 273 (352)
....++...+++.||.......
T Consensus 179 -----~~~~~~~~~l~~~~~~~~~~~~ 200 (259)
T 3lpm_A 179 -----ERLLDIIDIMRKYRLEPKRIQF 200 (259)
T ss_dssp -----TTHHHHHHHHHHTTEEEEEEEE
T ss_pred -----HHHHHHHHHHHHCCCceEEEEE
Confidence 3456788889999998876543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-15 Score=134.67 Aligned_cols=102 Identities=21% Similarity=0.285 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||||||+|.++..+++. ...+|+|+|+|+ |++.|+++....+ .+++++.+|+.+ +++++++||+|
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~---g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~~D~I 135 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKA---GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEE----VHLPVEKVDVI 135 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT---TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT----SCCSCSCEEEE
T ss_pred CCCEEEEeeccCcHHHHHHHHc---CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHH----hcCCCCcEEEE
Confidence 3789999999999999999884 334899999997 9999998876543 679999999974 44556899999
Q ss_pred Eehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEE
Q psy11741 185 LLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVL 216 (352)
Q Consensus 185 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~ 216 (352)
++..+.+.+ ...++..++..+.++|||||.++
T Consensus 136 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 136 ISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 987632222 23678889999999999999988
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-14 Score=123.82 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=98.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..+++.. .. +|+|+|+|+.|++.|++++...+ .++++.++|+.+. .. +++||+|+
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~--~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~----~~-~~~fD~Vi 197 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYG--KA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF----PG-ENIADRIL 197 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHT--CC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC----CC-CSCEEEEE
T ss_pred CCEEEEecccCCHHHHHHHHhC--CC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHh----cc-cCCccEEE
Confidence 7899999999999999999864 22 79999999999999999877543 3589999999853 22 67899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+... .....++..+.++|+|||++++.+....... .....+.+...++++|
T Consensus 198 ~~~p------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----------------------~~~~~~~i~~~~~~~G 248 (278)
T 2frn_A 198 MGYV------VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------PREPFETFKRITKEYG 248 (278)
T ss_dssp ECCC------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------TTTTHHHHHHHHHHTT
T ss_pred ECCc------hhHHHHHHHHHHHCCCCeEEEEEEeeccccc-----------------------cccHHHHHHHHHHHcC
Confidence 8532 3335788899999999999999765431100 0134677889999999
Q ss_pred CceEEe
Q psy11741 266 FVEKQN 271 (352)
Q Consensus 266 f~~~~~ 271 (352)
+.....
T Consensus 249 ~~~~~~ 254 (278)
T 2frn_A 249 YDVEKL 254 (278)
T ss_dssp CEEEEE
T ss_pred CeeEEe
Confidence 987653
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.7e-15 Score=127.43 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=99.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++.+. ++.+++++|+|+.+++.|+++.... ..++.+..+|+.+ .++++++||+|
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~----~~~~~~~~D~v 170 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVG-EKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE----AELEEAAYDGV 170 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG----CCCCTTCEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh----cCCCCCCcCEE
Confidence 478999999999999999998743 5779999999999999999987543 3679999999874 23456789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++. . .+...+++++.++|+|||.+++..... ....++...+++.
T Consensus 171 ~~~-----~--~~~~~~l~~~~~~L~~gG~l~~~~~~~-----------------------------~~~~~~~~~l~~~ 214 (258)
T 2pwy_A 171 ALD-----L--MEPWKVLEKAALALKPDRFLVAYLPNI-----------------------------TQVLELVRAAEAH 214 (258)
T ss_dssp EEE-----S--SCGGGGHHHHHHHEEEEEEEEEEESCH-----------------------------HHHHHHHHHHTTT
T ss_pred EEC-----C--cCHHHHHHHHHHhCCCCCEEEEEeCCH-----------------------------HHHHHHHHHHHHC
Confidence 972 3 455688999999999999999976432 1234667778889
Q ss_pred CCceEEee
Q psy11741 265 GFVEKQNL 272 (352)
Q Consensus 265 Gf~~~~~~ 272 (352)
||..++..
T Consensus 215 gf~~~~~~ 222 (258)
T 2pwy_A 215 PFRLERVL 222 (258)
T ss_dssp TEEEEEEE
T ss_pred CCceEEEE
Confidence 99887754
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=132.02 Aligned_cols=143 Identities=18% Similarity=0.166 Sum_probs=106.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|||||||+|.++..+++.+ ++.+++++|+ +.+++.|++. .++++..+|+.+ +++ .||+|++.
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~~--~~D~v~~~ 258 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIF--PHLKCTVFDQ-PQVVGNLTGN-----ENLNFVGGDMFK-----SIP--SADAVLLK 258 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC--TTSEEEEEEC-HHHHSSCCCC-----SSEEEEECCTTT-----CCC--CCSEEEEE
T ss_pred CCEEEEECCCcCHHHHHHHHHC--CCCeEEEecc-HHHHhhcccC-----CCcEEEeCccCC-----CCC--CceEEEEc
Confidence 6799999999999999999987 7789999999 7888776542 459999999874 233 49999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCC---CEEEEEEeCCCCchh------hHhhhcCccccCceeecCCCeeeeccCHHHHH
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKP---GGMVLFRDYGRYDLV------QLRFKKGRCLQDNFYARGDGTLVYFFTREEVK 258 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (352)
.++|+++.++...+|++++++|+| ||++++.+...+... ....... ........ ...++.+++.
T Consensus 259 ~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d----~~~~~~~~---g~~~t~~e~~ 331 (358)
T 1zg3_A 259 WVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYD----LVMLTMFL---GKERTKQEWE 331 (358)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHH----HHHHHHHS---CCCEEHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhC----HHHhccCC---CCCCCHHHHH
Confidence 999999766677999999999999 999999775432111 0000000 00000001 1246899999
Q ss_pred HHHHhCCCceEEee
Q psy11741 259 TMFESAGFVEKQNL 272 (352)
Q Consensus 259 ~ll~~~Gf~~~~~~ 272 (352)
++++++||+++...
T Consensus 332 ~ll~~aGf~~~~~~ 345 (358)
T 1zg3_A 332 KLIYDAGFSSYKIT 345 (358)
T ss_dssp HHHHHTTCCEEEEE
T ss_pred HHHHHcCCCeeEEE
Confidence 99999999988764
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-14 Score=123.50 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=85.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc---CC--CceEEEEecCCCCCCC---CCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY---KP--DRCHAFVCDVTSEDWN---PPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~---~~--~~v~~~~~d~~~~~~~---~~~~~~ 179 (352)
+.+|||+|||+|.++..++... ++.+|+|+|+++.+++.|++++.. .+ .++.++++|+.+.... ..++++
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~--~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARL--EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHC--TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CCEEEEeCChHhHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 6799999999999999999976 678999999999999999999865 43 3599999999753100 024467
Q ss_pred cceEEEehhhhh----------------ccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLD----------------AINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~----------------~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+||+|+++-.+. |........+++.+.++|+|||.+++..
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 899999962211 1122347789999999999999999853
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=129.35 Aligned_cols=136 Identities=18% Similarity=0.178 Sum_probs=98.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+|||||||+|.++..+++.. +..+|+++|+|+.+++.|++++.. ..++++++.+|+.+... ...+++||
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~--~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~~~~~~fD 171 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHG--TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVR--QTPDNTYD 171 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCT--TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH--SSCTTCEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHH--hccCCcee
Confidence 6799999999999999999853 567999999999999999987631 24679999999864210 11367899
Q ss_pred EEEehhhhhccChhHH--HHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHH
Q psy11741 183 IVLLIFVLDAINPNKM--QHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 260 (352)
+|++....++.+...+ ..+++.++++|+|||++++...++.. .......+.+.
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~-------------------------~~~~~~~~~~~ 226 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL-------------------------DLELIEKMSRF 226 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT-------------------------CHHHHHHHHHH
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc-------------------------chHHHHHHHHH
Confidence 9999665443322222 68899999999999999997533210 01235678889
Q ss_pred HHhCCCceEEee
Q psy11741 261 FESAGFVEKQNL 272 (352)
Q Consensus 261 l~~~Gf~~~~~~ 272 (352)
++++||..+...
T Consensus 227 l~~~GF~~v~~~ 238 (304)
T 3bwc_A 227 IRETGFASVQYA 238 (304)
T ss_dssp HHHHTCSEEEEE
T ss_pred HHhCCCCcEEEE
Confidence 999999987654
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-14 Score=119.73 Aligned_cols=125 Identities=7% Similarity=0.075 Sum_probs=101.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||||||+|.++..+++.. +..+|+|+|+++.+++.|++++...+ .++.+.++|..+.. .++.+||+|+
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~--~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~----~~~~~~D~Iv 95 (230)
T 3lec_A 22 GARLLDVGSDHAYLPIFLLQMG--YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF----EEADNIDTIT 95 (230)
T ss_dssp TEEEEEETCSTTHHHHHHHHTT--CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC----CGGGCCCEEE
T ss_pred CCEEEEECCchHHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc----ccccccCEEE
Confidence 7799999999999999999864 56789999999999999999987654 46999999987531 2233799988
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+.++ ..+-...+|....+.|+++|.|+++-. ...+.++.++.+.|
T Consensus 96 iaGm----Gg~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------------~~~~~lr~~L~~~G 140 (230)
T 3lec_A 96 ICGM----GGRLIADILNNDIDKLQHVKTLVLQPN-------------------------------NREDDLRKWLAAND 140 (230)
T ss_dssp EEEE----CHHHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHHHHHTT
T ss_pred EeCC----chHHHHHHHHHHHHHhCcCCEEEEECC-------------------------------CChHHHHHHHHHCC
Confidence 6544 224567889999999999999999732 24778999999999
Q ss_pred CceEEeee
Q psy11741 266 FVEKQNLI 273 (352)
Q Consensus 266 f~~~~~~~ 273 (352)
|.+++...
T Consensus 141 f~i~~E~l 148 (230)
T 3lec_A 141 FEIVAEDI 148 (230)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 99988653
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.5e-15 Score=124.17 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=84.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCc-ceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPES-LDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~-fD~ 183 (352)
+.+|||+|||+|.++..++.. ...+|+|+|+|+.|++.|++++...+ .++.++++|+.+.. ....+++ ||+
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~fD~ 128 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSR---QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL--KQPQNQPHFDV 128 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT--TSCCSSCCEEE
T ss_pred CCeEEEcCCccCHHHHHHHHc---cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH--HhhccCCCCCE
Confidence 679999999999999987763 23489999999999999999987654 47999999987421 1123578 999
Q ss_pred EEehhhhhccChhHHHHHHHHH--HHhcCCCEEEEEEeCC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQV--YKYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~ 221 (352)
|++...++ . .+...+++.+ .++|+|||.+++....
T Consensus 129 I~~~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 129 VFLDPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp EEECCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred EEECCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 99977643 3 5677888888 6689999999997654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.7e-15 Score=125.81 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=86.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCC-CCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPP-FAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~-~~~~~fD~V 184 (352)
+.+|||+|||+|..+..+++.. ++.+|+|+|+|+.+++.|++++...+ .++.++++|+.+. ++ ..+++||+|
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~~fD~V 146 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASIS--DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ---FENVNDKVYDMI 146 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTC--TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC---HHHHTTSCEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH---HHhhccCCccEE
Confidence 7899999999999999999865 67899999999999999999887644 4799999999752 22 226789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++... ......+++.+.++|+|||+|++.+.
T Consensus 147 ~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 147 FIDAA-----KAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp EEETT-----SSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred EEcCc-----HHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 97643 25567899999999999999999654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=125.09 Aligned_cols=98 Identities=21% Similarity=0.222 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++....+ ++.+..+|+... ++ .+++||+|++
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~~~---~~-~~~~fD~v~~ 140 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEI----VDKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTLG---YE-EEKPYDRVVV 140 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH----SSEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGGC---CG-GGCCEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHH----cCEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCcccc---cc-cCCCccEEEE
Confidence 4789999999999999999985 3689999999999999999876554 799999998752 22 3578999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
..+++++. ..+.++|+|||++++....
T Consensus 141 ~~~~~~~~--------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 141 WATAPTLL--------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp SSBBSSCC--------HHHHHTEEEEEEEEEEECS
T ss_pred CCcHHHHH--------HHHHHHcCCCcEEEEEEcC
Confidence 99999884 2588999999999998654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=132.31 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=84.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|+++....+ .+++++++|+.+ +++++++||+|+
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~---g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~Ii 138 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKA---GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEE----VELPVEKVDIII 138 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHT---TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTT----CCCSSSCEEEEE
T ss_pred CCEEEEEeccchHHHHHHHHC---CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHH----ccCCCCceEEEE
Confidence 789999999999999999985 345999999995 9999999876543 459999999984 455678999999
Q ss_pred ehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+..+.+++ ....+..++..+.++|||||+++..
T Consensus 139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred EccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 97654444 3467889999999999999998753
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=122.38 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ .++.+..+|+.+. ...+++||+|+
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~D~i~ 148 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHL----VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQG----WQARAPFDAII 148 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----CGGGCCEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHh----CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccC----CccCCCccEEE
Confidence 4789999999999999999984 5699999999999999999876533 5799999998752 22367899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+..+++++.. .+.++|+|||++++....
T Consensus 149 ~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 149 VTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp ESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred EccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 9999998842 578999999999997654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.5e-14 Score=118.43 Aligned_cols=124 Identities=8% Similarity=0.108 Sum_probs=100.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCC-cceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPE-SLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~-~fD~V 184 (352)
+.+|||||||+|.++..+++.. +..+|+|+|+++.+++.|++++...+ .++++..+|..+. + +.+ +||+|
T Consensus 16 g~~VlDIGtGsG~l~i~la~~~--~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~---l--~~~~~~D~I 88 (225)
T 3kr9_A 16 GAILLDVGSDHAYLPIELVERG--QIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA---F--EETDQVSVI 88 (225)
T ss_dssp TEEEEEETCSTTHHHHHHHHTT--SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG---C--CGGGCCCEE
T ss_pred CCEEEEeCCCcHHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh---c--ccCcCCCEE
Confidence 6799999999999999999865 67799999999999999999987654 4699999998642 2 223 69998
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+...+ ..+-...++......|+|+|+|+++-. ...+.++.++.+.
T Consensus 89 viaG~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~-------------------------------~~~~~vr~~L~~~ 133 (225)
T 3kr9_A 89 TIAGM----GGRLIARILEEGLGKLANVERLILQPN-------------------------------NREDDLRIWLQDH 133 (225)
T ss_dssp EEEEE----CHHHHHHHHHHTGGGCTTCCEEEEEES-------------------------------SCHHHHHHHHHHT
T ss_pred EEcCC----ChHHHHHHHHHHHHHhCCCCEEEEECC-------------------------------CCHHHHHHHHHHC
Confidence 87543 224567899999999999999999632 2467789999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||.+++...
T Consensus 134 Gf~i~~e~l 142 (225)
T 3kr9_A 134 GFQIVAESI 142 (225)
T ss_dssp TEEEEEEEE
T ss_pred CCEEEEEEE
Confidence 999988653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.3e-15 Score=132.77 Aligned_cols=109 Identities=13% Similarity=0.226 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc-------c---CCCceEEEEecCCCCCCCC
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-------Y---KPDRCHAFVCDVTSEDWNP 174 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-------~---~~~~v~~~~~d~~~~~~~~ 174 (352)
..++.+|||||||+|.+++.++... +..+++|||+|+.|++.|+++.. . ...++.++++|+.+ +
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~--g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~----l 244 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAAT--NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS----E 244 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHC--CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTS----H
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccC----C
Confidence 4458899999999999999998764 34469999999999999987532 1 12579999999984 3
Q ss_pred CCCC--CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 175 PFAP--ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 175 ~~~~--~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
++.+ ..||+|+++..+ +. ++....|.+++++|||||+|++.+...
T Consensus 245 p~~d~~~~aDVVf~Nn~~-F~--pdl~~aL~Ei~RvLKPGGrIVssE~f~ 291 (438)
T 3uwp_A 245 EWRERIANTSVIFVNNFA-FG--PEVDHQLKERFANMKEGGRIVSSKPFA 291 (438)
T ss_dssp HHHHHHHTCSEEEECCTT-CC--HHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred ccccccCCccEEEEcccc-cC--chHHHHHHHHHHcCCCCcEEEEeeccc
Confidence 3322 479999997665 33 688888999999999999999976443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=125.71 Aligned_cols=124 Identities=19% Similarity=0.252 Sum_probs=99.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++.+. ++.+++|+|+|+.+++.|++++...+ .++.+..+|+.+. +++++||+|
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~D~v 166 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVG-PEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-----IEEENVDHV 166 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-----CCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHHhC-CCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-----cCCCCcCEE
Confidence 478999999999999999999743 67899999999999999999876533 3499999999742 346789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++. . .+...+++++.++|+|||.+++..... ....++...+++.
T Consensus 167 ~~~-----~--~~~~~~l~~~~~~L~~gG~l~~~~~~~-----------------------------~~~~~~~~~l~~~ 210 (255)
T 3mb5_A 167 ILD-----L--PQPERVVEHAAKALKPGGFFVAYTPCS-----------------------------NQVMRLHEKLREF 210 (255)
T ss_dssp EEC-----S--SCGGGGHHHHHHHEEEEEEEEEEESSH-----------------------------HHHHHHHHHHHHT
T ss_pred EEC-----C--CCHHHHHHHHHHHcCCCCEEEEEECCH-----------------------------HHHHHHHHHHHHc
Confidence 972 2 455678999999999999999975431 1355678888999
Q ss_pred C--CceEEee
Q psy11741 265 G--FVEKQNL 272 (352)
Q Consensus 265 G--f~~~~~~ 272 (352)
| |..++..
T Consensus 211 g~~f~~~~~~ 220 (255)
T 3mb5_A 211 KDYFMKPRTI 220 (255)
T ss_dssp GGGBSCCEEE
T ss_pred CCCccccEEE
Confidence 9 9877653
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-14 Score=122.11 Aligned_cols=107 Identities=15% Similarity=0.243 Sum_probs=83.2
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||+|||+|.++..+++..+ ++.+|+|+|+|+.|++.+.+++... .++.+..+|+.+.. .++..+++||+|+
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g-~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~-~~~~~~~~~D~V~ 152 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVG-PDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPH-KYRMLIAMVDVIF 152 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGG-GGGGGCCCEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChh-hhcccCCcEEEEE
Confidence 3478999999999999999998753 4569999999998877776665443 67999999987521 1334467899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+... .++....++.++.++|||||++++..
T Consensus 153 ~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 153 ADVA----QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp ECCC----CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCC----CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8543 33555677899999999999999953
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=130.22 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.|++.|++++...+ .++.+..+|+.+ ++++++||
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~--p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-----~~~~~~fD 294 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKN--PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-----GVEPFRFN 294 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHC--TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-----TCCTTCEE
T ss_pred CCCeEEEEeCcchHHHHHHHHHC--CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-----cCCCCCee
Confidence 35899999999999999999976 78899999999999999999876533 258889999875 23467999
Q ss_pred EEEehhhhhcc---ChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAI---NPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|+++..+|+. .......+++++.++|+|||.+++...
T Consensus 295 ~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 295 AVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp EEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 99998877652 334456789999999999999999653
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=119.75 Aligned_cols=124 Identities=6% Similarity=0.068 Sum_probs=100.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||||||+|.++..+++.. +..+|+|+|+++.+++.|++++...+ .++.+.++|..+. + .++.+||+|+
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~--~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~---~-~~~~~~D~Iv 95 (244)
T 3gnl_A 22 NERIADIGSDHAYLPCFAVKNQ--TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAV---I-EKKDAIDTIV 95 (244)
T ss_dssp SEEEEEETCSTTHHHHHHHHTT--SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG---C-CGGGCCCEEE
T ss_pred CCEEEEECCccHHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhc---c-CccccccEEE
Confidence 7799999999999999999864 56789999999999999999987654 4699999998753 1 1223599988
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
+..+ ..+-...+|....+.|+++|+|+++-. ...+.++.++.+.|
T Consensus 96 iagm----Gg~lI~~IL~~~~~~L~~~~~lIlq~~-------------------------------~~~~~lr~~L~~~G 140 (244)
T 3gnl_A 96 IAGM----GGTLIRTILEEGAAKLAGVTKLILQPN-------------------------------IAAWQLREWSEQNN 140 (244)
T ss_dssp EEEE----CHHHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHHHHHHT
T ss_pred EeCC----chHHHHHHHHHHHHHhCCCCEEEEEcC-------------------------------CChHHHHHHHHHCC
Confidence 7443 335567889999999999999999732 24678999999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|.+++..
T Consensus 141 f~i~~E~ 147 (244)
T 3gnl_A 141 WLITSEA 147 (244)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 9987754
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=127.74 Aligned_cols=162 Identities=15% Similarity=0.172 Sum_probs=100.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEE-EEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHA-FVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~-~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||||.++..+++. ...+|+|+|+|+.|++.+.++. +++.. ...|+.... ...++..+||+|+
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~---ga~~V~aVDvs~~mL~~a~r~~----~rv~~~~~~ni~~l~-~~~l~~~~fD~v~ 156 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN---GAKLVYAVDVGTNQLVWKLRQD----DRVRSMEQYNFRYAE-PVDFTEGLPSFAS 156 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT---TCSEEEEECSSSSCSCHHHHTC----TTEEEECSCCGGGCC-GGGCTTCCCSEEE
T ss_pred cccEEEecCCCccHHHHHHHhC---CCCEEEEEECCHHHHHHHHHhC----cccceecccCceecc-hhhCCCCCCCEEE
Confidence 3779999999999999998884 3358999999999999864431 22222 223433211 1112344699999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCcc-ccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRC-LQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+..+++++ ..+|.+++++|+|||.+++.... . +..+.. +... ..-.....+....+++..+++++
T Consensus 157 ~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkP--q-----fe~~~~~~~~~--G~vrd~~~~~~~~~~v~~~~~~~ 222 (291)
T 3hp7_A 157 IDVSFISL-----NLILPALAKILVDGGQVVALVKP--Q-----FEAGREQIGKN--GIVRESSIHEKVLETVTAFAVDY 222 (291)
T ss_dssp ECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECG--G-----GTSCGGGCC-C--CCCCCHHHHHHHHHHHHHHHHHT
T ss_pred EEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECc--c-----cccChhhcCCC--CccCCHHHHHHHHHHHHHHHHHC
Confidence 98777655 67899999999999999886311 1 111100 0000 00000112346788899999999
Q ss_pred CCceEEeeeeeeeeeecCCccceeeeeEe
Q psy11741 265 GFVEKQNLIDRRLQVNRGKQIKMYRVWIQ 293 (352)
Q Consensus 265 Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
||.+...... ++....+-..|-.|..
T Consensus 223 Gf~v~~~~~s---pi~g~~gn~e~l~~~~ 248 (291)
T 3hp7_A 223 GFSVKGLDFS---PIQGGHGNIEFLAHLE 248 (291)
T ss_dssp TEEEEEEEEC---SSCCGGGCCCEEEEEE
T ss_pred CCEEEEEEEC---CCCCCCcCHHHHHHhh
Confidence 9998876442 2222334444555553
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-14 Score=125.65 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=99.3
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
.++.+|||+|||+|.++..+++.+. ++.+++++|+|+.+++.|+++....+ .++.+..+|+.+. +++++||+
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~D~ 184 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVG-SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-----FDEKDVDA 184 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTT-TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-----CSCCSEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-----ccCCccCE
Confidence 3478999999999999999998743 57799999999999999999876544 4799999998752 34578999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
|++. . .+...+++.+.++|+|||.+++.+... ....++...+++
T Consensus 185 V~~~-----~--~~~~~~l~~~~~~L~pgG~l~~~~~~~-----------------------------~~~~~~~~~l~~ 228 (277)
T 1o54_A 185 LFLD-----V--PDPWNYIDKCWEALKGGGRFATVCPTT-----------------------------NQVQETLKKLQE 228 (277)
T ss_dssp EEEC-----C--SCGGGTHHHHHHHEEEEEEEEEEESSH-----------------------------HHHHHHHHHHHH
T ss_pred EEEC-----C--cCHHHHHHHHHHHcCCCCEEEEEeCCH-----------------------------HHHHHHHHHHHH
Confidence 9973 2 455688999999999999999976431 124566777888
Q ss_pred CCCceEEee
Q psy11741 264 AGFVEKQNL 272 (352)
Q Consensus 264 ~Gf~~~~~~ 272 (352)
.||..++..
T Consensus 229 ~gf~~~~~~ 237 (277)
T 1o54_A 229 LPFIRIEVW 237 (277)
T ss_dssp SSEEEEEEE
T ss_pred CCCceeEEE
Confidence 999877654
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-14 Score=125.68 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=95.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeC-CHHHHHHHHhcc-----ccCC------CceEEEEecCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDF-SENAVNILKEHE-----EYKP------DRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~-s~~~l~~a~~~~-----~~~~------~~v~~~~~d~~~~~~~~~ 175 (352)
+.+|||+|||+|.++..+++. ...+|+|+|+ |+.+++.|++++ ...+ .++.+...|..+....+.
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~---~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLA---GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHT---TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred CCeEEEecccccHHHHHHHHc---CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 779999999999999988873 2238999999 899999999987 3322 257777666543211111
Q ss_pred --CCCCcceEEEehhhhhccChhHHHHHHHHHHHhcC---C--CEEEEEEeCCCCchhhHhhhcCccccCceeecCCCee
Q psy11741 176 --FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLK---P--GGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL 248 (352)
Q Consensus 176 --~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk---p--gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
+.+++||+|++..++++. .+...+++.+.++|+ | ||.+++....... .
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~--~--------------------- 211 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVTFTHHRP--H--------------------- 211 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC---------------------------
T ss_pred hhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeec--c---------------------
Confidence 025789999999998887 788999999999999 9 9987774321100 0
Q ss_pred eeccCHHHHHHHHHhCC-CceEEee
Q psy11741 249 VYFFTREEVKTMFESAG-FVEKQNL 272 (352)
Q Consensus 249 ~~~~~~~~~~~ll~~~G-f~~~~~~ 272 (352)
......++...+++.| |.+....
T Consensus 212 -~~~~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 212 -LAERDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp -----CTHHHHHHHHSTTEEEEEEE
T ss_pred -cchhHHHHHHHHHhcCCEEEEEec
Confidence 0011245667888999 9987763
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-16 Score=148.50 Aligned_cols=107 Identities=15% Similarity=0.242 Sum_probs=84.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||||||+|.++..||+ .|++|+|||+|+.+|+.|+.++...+ .++.+.++++.+.. ....+++||+|+|
T Consensus 67 ~~~vLDvGCG~G~~~~~la~----~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~fD~v~~ 140 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLAS----KGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVI--AALEEGEFDLAIG 140 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHH--HHCCTTSCSEEEE
T ss_pred CCeEEEECCCCcHHHHHHHh----CCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHh--hhccCCCccEEEE
Confidence 67999999999999999999 78899999999999999999887654 68999999987421 1234679999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
..+++|+...+....+..+.+.|+++|..++..+
T Consensus 141 ~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~ 174 (569)
T 4azs_A 141 LSVFHHIVHLHGIDEVKRLLSRLADVTQAVILEL 174 (569)
T ss_dssp ESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred CcchhcCCCHHHHHHHHHHHHHhccccceeeEEe
Confidence 9999999433323345567777888876666544
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-15 Score=128.25 Aligned_cols=141 Identities=19% Similarity=0.180 Sum_probs=86.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC----CCceEEEE-ecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK----PDRCHAFV-CDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~-~d~~~~~~~~~~~~~~fD 182 (352)
+.+|||||||+|.++..+++. ...+|+|+|+|+.|++.|+++.... ..++.+.. .|+.. ..+...+||
T Consensus 38 g~~VLDiGcGtG~~t~~la~~---g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~~~D 110 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQN---GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ----GRPSFTSID 110 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHT---TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS----CCCSEEEEC
T ss_pred CCEEEEEccCCCHHHHHHHhc---CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc----CCCCEEEEE
Confidence 679999999999999999984 2249999999999999987764311 11222222 12110 011223445
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
++++ ++ ..++++++++|||||.+++.. . +........ +... ........+..+.+++.++++
T Consensus 111 ~v~~-----~l-----~~~l~~i~rvLkpgG~lv~~~-~-p~~e~~~~~----~~~~--G~~~d~~~~~~~~~~l~~~l~ 172 (232)
T 3opn_A 111 VSFI-----SL-----DLILPPLYEILEKNGEVAALI-K-PQFEAGREQ----VGKN--GIIRDPKVHQMTIEKVLKTAT 172 (232)
T ss_dssp CSSS-----CG-----GGTHHHHHHHSCTTCEEEEEE-C-HHHHSCHHH----HC-C--CCCCCHHHHHHHHHHHHHHHH
T ss_pred EEhh-----hH-----HHHHHHHHHhccCCCEEEEEE-C-cccccCHHH----hCcC--CeecCcchhHHHHHHHHHHHH
Confidence 4443 22 568999999999999999854 1 111100000 0000 000011223457889999999
Q ss_pred hCCCceEEeee
Q psy11741 263 SAGFVEKQNLI 273 (352)
Q Consensus 263 ~~Gf~~~~~~~ 273 (352)
++||.++....
T Consensus 173 ~aGf~v~~~~~ 183 (232)
T 3opn_A 173 QLGFSVKGLTF 183 (232)
T ss_dssp HHTEEEEEEEE
T ss_pred HCCCEEEEEEE
Confidence 99999887654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-14 Score=119.89 Aligned_cols=106 Identities=18% Similarity=0.266 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||+|||+|.++..+++.++ ++.+|+|+|+|+.|++.+++++... .++.+.++|+.......+. .++||+|+
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~-~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~-~~~~D~v~ 148 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVG-WEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPEEYRAL-VPKVDVIF 148 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGGGGTTT-CCCEEEEE
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhC-CCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEccCCCcchhhcc-cCCceEEE
Confidence 3478999999999999999998753 4569999999999999998887654 6899999998752110122 35899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+... .+.....++.++.++|||||.+++.
T Consensus 149 ~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 149 EDVA----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp ECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 7543 2244455699999999999999986
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.1e-14 Score=115.59 Aligned_cols=116 Identities=12% Similarity=0.130 Sum_probs=89.7
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCC---CCCcc
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF---APESL 181 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~f 181 (352)
..++.+|||+|||. +++|+|+.|++.|+++.. .++.+.++|+.+ +++ ++++|
T Consensus 10 ~~~g~~vL~~~~g~------------------v~vD~s~~ml~~a~~~~~---~~~~~~~~d~~~----~~~~~~~~~~f 64 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS------------------SPVEALKGLVDKLQALTG---NEGRVSVENIKQ----LLQSAHKESSF 64 (176)
T ss_dssp CCTTSEEEEEECTT------------------SCHHHHHHHHHHHHHHTT---TTSEEEEEEGGG----GGGGCCCSSCE
T ss_pred CCCCCEEEEecCCc------------------eeeeCCHHHHHHHHHhcc---cCcEEEEechhc----CccccCCCCCE
Confidence 44588999999986 128999999999998864 248999999984 333 67899
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHH
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 261 (352)
|+|++..++||+. .+...++++++++|||||++++....... .+...+..+.+++.+++
T Consensus 65 D~V~~~~~l~~~~-~~~~~~l~~~~r~LkpgG~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~l 123 (176)
T 2ld4_A 65 DIILSGLVPGSTT-LHSAEILAEIARILRPGGCLFLKEPVETA--------------------VDNNSKVKTASKLCSAL 123 (176)
T ss_dssp EEEEECCSTTCCC-CCCHHHHHHHHHHEEEEEEEEEEEEEESS--------------------SCSSSSSCCHHHHHHHH
T ss_pred eEEEECChhhhcc-cCHHHHHHHHHHHCCCCEEEEEEcccccc--------------------cccccccCCHHHHHHHH
Confidence 9999999999982 34588999999999999999995321100 00012235789999999
Q ss_pred HhCCC
Q psy11741 262 ESAGF 266 (352)
Q Consensus 262 ~~~Gf 266 (352)
+++||
T Consensus 124 ~~aGf 128 (176)
T 2ld4_A 124 TLSGL 128 (176)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 99999
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-14 Score=131.68 Aligned_cols=106 Identities=20% Similarity=0.297 Sum_probs=89.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|+++....+..+.+..+|+... .+++||+|+++
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~--~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~------~~~~fD~Iv~~ 268 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHS--PKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE------VKGRFDMIISN 268 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHC--TTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT------CCSCEEEEEEC
T ss_pred CCeEEEecCccCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc------ccCCeeEEEEC
Confidence 6799999999999999999876 667999999999999999999876655677888887641 25789999999
Q ss_pred hhhhcc---ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 188 FVLDAI---NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 188 ~~l~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
..+|+. +..+...+++++.++|+|||.+++....
T Consensus 269 ~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 269 PPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred CCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 888752 3467889999999999999999997543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-14 Score=123.58 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=85.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||||||+|..+..+++.++ ++.+|+|+|+|+.+++.|++++...+ .++.+.++|+.+....+ ...++||+|+
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~-~~~~~fD~V~ 141 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELP-ADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL-GECPAFDLIF 141 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTC-CSCCCCSEEE
T ss_pred CCEEEEecCCchHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhc-CCCCCeEEEE
Confidence 78999999999999999999763 27899999999999999999986543 47999999986421111 1135899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+... ......+++.+.++|||||+|++.+..
T Consensus 142 ~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 142 IDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp ECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred ECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 8542 356678999999999999999997543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-14 Score=130.49 Aligned_cols=98 Identities=19% Similarity=0.288 Sum_probs=79.2
Q ss_pred CCeEEEEcCC------ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCC----
Q psy11741 108 TKNILEIGCG------VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFA---- 177 (352)
Q Consensus 108 ~~~vLD~GcG------~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~---- 177 (352)
+.+||||||| +|..+..+++.+. ++.+|+|+|+|+.|. ....+++++++|+.+ +++.
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~f-P~a~V~GVDiSp~m~--------~~~~rI~fv~GDa~d----lpf~~~l~ 283 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFF-PRGQIYGLDIMDKSH--------VDELRIRTIQGDQND----AEFLDRIA 283 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHC-TTCEEEEEESSCCGG--------GCBTTEEEEECCTTC----HHHHHHHH
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhC-CCCEEEEEECCHHHh--------hcCCCcEEEEecccc----cchhhhhh
Confidence 6899999999 7777777776543 678999999999973 123679999999973 4444
Q ss_pred --CCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 178 --PESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 178 --~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+++||+|++.. .|++ .+...+|++++++|||||++++.+..
T Consensus 284 ~~d~sFDlVisdg-sH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 284 RRYGPFDIVIDDG-SHIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHCCEEEEEECS-CCCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred cccCCccEEEECC-cccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 57999999864 3555 78899999999999999999998754
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.6e-14 Score=127.11 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC------------CCceEEEEecCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK------------PDRCHAFVCDVTSEDWNP 174 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~------------~~~v~~~~~d~~~~~~~~ 174 (352)
++.+|||+|||+|.++..+++..+ +..+|+|+|+++.+++.|+++.... ..++.+..+|+.+.. .
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~--~ 181 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVG-SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT--E 181 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc--c
Confidence 478999999999999999998643 5579999999999999999987631 257999999997531 1
Q ss_pred CCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 175 PFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 175 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++++++||+|++... ....++.++.++|+|||.+++...
T Consensus 182 ~~~~~~fD~V~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 182 DIKSLTFDAVALDML-------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ------EEEEEECSS-------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred ccCCCCeeEEEECCC-------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 345678999998432 223378999999999999998754
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-14 Score=121.11 Aligned_cols=105 Identities=10% Similarity=0.020 Sum_probs=82.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++.. ...+|+|+|+|+.|++.|++++...+ .+++++++|+.+. ++..+++||+|++
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~---~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~---~~~~~~~fD~V~~ 128 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSR---YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF---LAQKGTPHNIVFV 128 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH---HSSCCCCEEEEEE
T ss_pred CCeEEEeCCCcCHHHHHHHhc---CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH---HhhcCCCCCEEEE
Confidence 679999999999999987774 22489999999999999999887644 4799999998641 2334678999998
Q ss_pred hhhhhccChhHHHHHHHHHHH--hcCCCEEEEEEeCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYK--YLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~ 221 (352)
...++ . .....+++.+.+ +|+|||++++....
T Consensus 129 ~~p~~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 129 DPPFR-R--GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp CCSSS-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCCCC-C--CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 76633 3 456677888866 59999999987543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-14 Score=123.27 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=84.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||||||+|..+..+++.++ ++.+|+++|+|+.+++.|++++...+ .+++++++|+.+... .+.+++||+|
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~--~~~~~~fD~V 133 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLA-DNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS--RLANDSYQLV 133 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSC-TTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG--GSCTTCEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH--HhcCCCcCeE
Confidence 44999999999999999999764 47899999999999999999987643 469999999865211 1236799999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++... ..+...+++.+.++|+|||++++.+.
T Consensus 134 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 134 FGQVS-----PMDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp EECCC-----TTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred EEcCc-----HHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 98643 24566789999999999999999643
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-14 Score=128.64 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|+++.+..+ .+++++.+|+.+. ++ +++||+|
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~~-~~~~D~I 120 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQA---GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV----SL-PEQVDII 120 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT---TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC----CC-SSCEEEE
T ss_pred CcCEEEEcCCCccHHHHHHHhC---CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC----CC-CCceeEE
Confidence 3789999999999999998884 345999999996 8899988876543 6799999999742 33 3689999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
++..+++|+..+.....+..++++|||||.+++.
T Consensus 121 vs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 121 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 9998888886667778888999999999999864
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-14 Score=119.38 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=83.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|++++...+ .++.+..+|+.+. ++..+++||+|+
T Consensus 32 ~~~vLDlGcG~G~~~~~l~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~fD~i~ 105 (177)
T 2esr_A 32 GGRVLDLFAGSGGLAIEAVSR---GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA---IDCLTGRFDLVF 105 (177)
T ss_dssp SCEEEEETCTTCHHHHHHHHT---TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH---HHHBCSCEEEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh---HHhhcCCCCEEE
Confidence 779999999999999999884 34699999999999999999886544 4689999998641 222246799999
Q ss_pred ehhhhhccChhHHHHHHHHHH--HhcCCCEEEEEEeCCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVY--KYLKPGGMVLFRDYGR 222 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 222 (352)
+...++. .....+++.+. ++|+|||++++.....
T Consensus 106 ~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 106 LDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp ECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred ECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 9765432 34566677776 9999999999976543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.7e-15 Score=119.66 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=79.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++....+.++.+.++|+.+.....+...++||+|++.
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASE----GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHT----TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeCCCcCHHHHHHHHC----CCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 779999999999999999984 4459999999999999999876544478999999864210011113479999998
Q ss_pred hhhhccChhHHHHHHHHHH--HhcCCCEEEEEEeCCC
Q psy11741 188 FVLDAINPNKMQHVINQVY--KYLKPGGMVLFRDYGR 222 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 222 (352)
..++ - ....+++.+. ++|+|||.+++.....
T Consensus 118 ~~~~-~---~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 118 PPYA-M---DLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CCTT-S---CTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCCc-h---hHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 7654 2 2233444454 9999999999986554
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.5e-14 Score=124.70 Aligned_cols=135 Identities=10% Similarity=0.077 Sum_probs=99.0
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|..+..+++.+. ++.+|+|+|+|+.+++.+++++...+ .++.+.++|+... +..+++||+|
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~----~~~~~~fD~I 191 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMR-NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI----GELNVEFDKI 191 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTT-TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG----GGGCCCEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhc----ccccccCCEE
Confidence 3478999999999999999998763 45789999999999999999986543 4799999998742 2235689999
Q ss_pred Eehh------hhhcc-------Ch-------hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecC
Q psy11741 185 LLIF------VLDAI-------NP-------NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARG 244 (352)
Q Consensus 185 ~~~~------~l~~~-------~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
++.. ++.+. ++ ..+..+|+++.++|||||++++.+......
T Consensus 192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~------------------- 252 (315)
T 1ixk_A 192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE------------------- 252 (315)
T ss_dssp EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG-------------------
T ss_pred EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH-------------------
Confidence 9832 22211 11 123689999999999999999987653211
Q ss_pred CCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 245 DGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 245 ~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
-+.+.+..++++.||..+..
T Consensus 253 -------Ene~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 253 -------ENEFVIQWALDNFDVELLPL 272 (315)
T ss_dssp -------GTHHHHHHHHHHSSEEEECC
T ss_pred -------HhHHHHHHHHhcCCCEEecC
Confidence 23445677788888776543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-14 Score=120.08 Aligned_cols=102 Identities=19% Similarity=0.135 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++... +..+|+|+|+|+.+++.|+++....+ .++.+..+|+.. ..+ .+++||+|+
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~~-~~~~fD~v~ 151 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIVG-EDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL---GYE-PLAPYDRIY 151 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG---CCG-GGCCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc---CCC-CCCCeeEEE
Confidence 478999999999999999998753 34699999999999999998875432 468999999853 222 256899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+..+++++. .++.++|+|||.+++....
T Consensus 152 ~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 152 TTAAGPKIP--------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp ESSBBSSCC--------HHHHHTEEEEEEEEEEESS
T ss_pred ECCchHHHH--------HHHHHHcCCCcEEEEEECC
Confidence 999999884 3788999999999997644
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-14 Score=130.84 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=84.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||||||+|.++..+++. ...+|+|+|+| .|++.|+++....+ .+++++++|+.+ ++++ ++||+|
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~---g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~-~~~D~I 133 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVED----ISLP-EKVDVI 133 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT---TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGG----CCCS-SCEEEE
T ss_pred CCCEEEEeccCcCHHHHHHHhc---CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhh----cCcC-CcceEE
Confidence 4789999999999999999984 22399999999 99999999876543 559999999975 3333 789999
Q ss_pred EehhhhhccC-hhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAIN-PNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++..+.+++. ...+..+++.+.++|||||++++..
T Consensus 134 v~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 134 ISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp EECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred EEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 9976656553 3568889999999999999998754
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-14 Score=124.26 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC----CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK----PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
++.+|||+|||+|.++..+++... ++.+++++|+|+.+++.|+++.... ..++.+..+|+.+ .++++++||
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~----~~~~~~~~D 173 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVG-PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD----SELPDGSVD 173 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG----CCCCTTCEE
T ss_pred CCCEEEEEcccccHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh----cCCCCCcee
Confidence 478999999999999999998643 5679999999999999999987543 3679999999974 334567899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+|++. + .+...+++++.++|+|||.+++....
T Consensus 174 ~v~~~-----~--~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 174 RAVLD-----M--LAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp EEEEE-----S--SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred EEEEC-----C--cCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 99982 3 34457899999999999999997654
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-14 Score=120.91 Aligned_cols=108 Identities=16% Similarity=0.257 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc---------CCCceEEEEecCCCCCCCCC--
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY---------KPDRCHAFVCDVTSEDWNPP-- 175 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~v~~~~~d~~~~~~~~~-- 175 (352)
++.+|||||||+|.++..++... ++.+|+|+|+|+.+++.|++++.. ...++.++++|+.+. ++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~---l~~~ 123 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAF--PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF---LPNF 123 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHS--TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC---GGGT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC--CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH---HHHh
Confidence 36799999999999999999976 677999999999999999887653 225799999998752 33
Q ss_pred CCCCcceEEEehhhhhccChh------HHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 176 FAPESLDIVLLIFVLDAINPN------KMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 176 ~~~~~fD~V~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++.+++|.|++...-.+.... ....+++++.++|+|||.|++.+
T Consensus 124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 557889999854321111000 01479999999999999999964
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=131.84 Aligned_cols=109 Identities=15% Similarity=0.274 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHH-------HhccccCC---CceEEEEecCCCCCCCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNIL-------KEHEEYKP---DRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a-------~~~~~~~~---~~v~~~~~d~~~~~~~~~ 175 (352)
.++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.| ++++...+ .++.++++|.....+.++
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~--g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~ 318 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALEC--GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA 318 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH--CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccc
Confidence 357899999999999999999875 445899999999999988 77765543 578998876442100011
Q ss_pred CCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 176 FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 176 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
...++||+|+++.++ +. +++..+|+++.++|||||.+++.+
T Consensus 319 ~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 319 ELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp HHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEee
Confidence 124689999987665 33 677888999999999999999964
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-14 Score=123.45 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=84.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC---CC--c-----------------------
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK---PD--R----------------------- 159 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~---~~--~----------------------- 159 (352)
+.+|||+|||+|.++..++.....++.+|+|+|+|+.|++.|+++.... +. +
T Consensus 52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (250)
T 1o9g_A 52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 131 (250)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhh
Confidence 6799999999999999998862115679999999999999999876543 11 1
Q ss_pred --eE-------------EEEecCCCCCCCCCC----CCCcceEEEehhhhhccC-------hhHHHHHHHHHHHhcCCCE
Q psy11741 160 --CH-------------AFVCDVTSEDWNPPF----APESLDIVLLIFVLDAIN-------PNKMQHVINQVYKYLKPGG 213 (352)
Q Consensus 160 --v~-------------~~~~d~~~~~~~~~~----~~~~fD~V~~~~~l~~~~-------~~~~~~~l~~~~~~LkpgG 213 (352)
+. +.++|+.+. .+. ..++||+|+++..+.+.. .+....+++++.++|+|||
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 208 (250)
T 1o9g_A 132 RRLRERLTAEGGALPCAIRTADVFDP---RALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA 208 (250)
T ss_dssp HHHHHHHHHTTSSCCEEEEECCTTCG---GGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred hhhhhhccccccccccceeecccccc---cccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCc
Confidence 56 999998742 110 245899999976555442 2567799999999999999
Q ss_pred EEEEEeC
Q psy11741 214 MVLFRDY 220 (352)
Q Consensus 214 ~l~~~~~ 220 (352)
++++...
T Consensus 209 ~l~~~~~ 215 (250)
T 1o9g_A 209 VIAVTDR 215 (250)
T ss_dssp EEEEEES
T ss_pred EEEEeCc
Confidence 9998543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-13 Score=112.81 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++. ...+++|+|+|+.+++.|+++....+.++.++++|+.+ + +++||+|++
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~----~---~~~~D~v~~ 118 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLL---GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE----F---NSRVDIVIM 118 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG----C---CCCCSEEEE
T ss_pred CcCEEEEeeCCCCHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH----c---CCCCCEEEE
Confidence 3789999999999999999884 22379999999999999999987654579999999874 2 248999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
+..++.........+++.+.+++ ||.+++..... -+.+.+...+++.||
T Consensus 119 ~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~-----------------------------~~~~~~~~~l~~~g~ 167 (207)
T 1wy7_A 119 NPPFGSQRKHADRPFLLKAFEIS--DVVYSIHLAKP-----------------------------EVRRFIEKFSWEHGF 167 (207)
T ss_dssp CCCCSSSSTTTTHHHHHHHHHHC--SEEEEEEECCH-----------------------------HHHHHHHHHHHHTTE
T ss_pred cCCCccccCCchHHHHHHHHHhc--CcEEEEEeCCc-----------------------------CCHHHHHHHHHHCCC
Confidence 87766664445567888999988 66544431110 124456778889998
Q ss_pred ceEEe
Q psy11741 267 VEKQN 271 (352)
Q Consensus 267 ~~~~~ 271 (352)
.+...
T Consensus 168 ~~~~~ 172 (207)
T 1wy7_A 168 VVTHR 172 (207)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.3e-15 Score=121.70 Aligned_cols=109 Identities=12% Similarity=0.061 Sum_probs=82.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++....+ .++.++++|+.+....++..+++||+|+
T Consensus 45 ~~~vLD~GcG~G~~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 45 GGMALDLYSGSGGLAIEAVSR---GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp SCEEEETTCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEeCCccCHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 779999999999999988873 44699999999999999999876543 4699999998742101112257899999
Q ss_pred ehhhhhccChhHHHHHHHHH--HHhcCCCEEEEEEeCCC
Q psy11741 186 LIFVLDAINPNKMQHVINQV--YKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~ 222 (352)
+...++. ......++.+ .++|+|||++++.....
T Consensus 122 ~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 122 LDPPYAK---QEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp ECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred ECCCCCc---hhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 9776442 2345556666 88899999999976543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-15 Score=127.54 Aligned_cols=154 Identities=14% Similarity=0.077 Sum_probs=95.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCC---CCcc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFA---PESL 181 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~---~~~f 181 (352)
++.+|||+|||+|.++..++... ++.+|+|+|+|+.|++.|++++...+ .++.++++|+.+.. ..+++ +++|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~~f 141 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL--NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL-MDALKEESEIIY 141 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS-TTTSTTCCSCCB
T ss_pred CCCEEEEeCCChhHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhh-hhhhhcccCCcc
Confidence 36799999999999999998865 56799999999999999999876543 35999999976421 01222 2689
Q ss_pred eEEEehhhhhccC-------------hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCee
Q psy11741 182 DIVLLIFVLDAIN-------------PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL 248 (352)
Q Consensus 182 D~V~~~~~l~~~~-------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
|+|+++-..++.. ......++..++++|||||.+.+........... .... .+... ..
T Consensus 142 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~-l~~~-----g~~~~---~~ 212 (254)
T 2h00_A 142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQL-KKRL-----RWYSC---ML 212 (254)
T ss_dssp SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHH-GGGB-----SCEEE---EE
T ss_pred cEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhc-ccce-----EEEEE---CC
Confidence 9999974433321 0112356778899999999877643110000000 0000 00100 01
Q ss_pred eeccCHHHHHHHHHhCCCceEEee
Q psy11741 249 VYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 249 ~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
......+++.++++++||..+...
T Consensus 213 ~~~~~~~~~~~~l~~~Gf~~v~~~ 236 (254)
T 2h00_A 213 GKKCSLAPLKEELRIQGVPKVTYT 236 (254)
T ss_dssp SSTTSHHHHHHHHHHTTCSEEEEE
T ss_pred CChhHHHHHHHHHHHcCCCceEEE
Confidence 112345789999999999987653
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-15 Score=131.86 Aligned_cols=100 Identities=16% Similarity=0.232 Sum_probs=85.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|++++...+ .++.++++|+.+. + ++++||+|+
T Consensus 79 ~~~vLD~gcG~G~~~~~la~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~-~~~~~D~v~ 149 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFAL----TGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL----A-SFLKADVVF 149 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----G-GGCCCSEEE
T ss_pred CCEEEECccccCHHHHHHHH----cCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHh----c-ccCCCCEEE
Confidence 78999999999999999998 56799999999999999999987655 4799999998742 2 367999999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+...+++. .+....+.+++++|+|||.+++.
T Consensus 150 ~~~~~~~~--~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 150 LSPPWGGP--DYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp ECCCCSSG--GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred ECCCcCCc--chhhhHHHHHHhhcCCcceeHHH
Confidence 99888887 45455777899999999997664
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=9.3e-14 Score=125.05 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=84.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++... ...+|+|+|+|+.+++.|+++....+ .++.+..+|+.+. . ..+++||+|+
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~---~-~~~~~fD~Iv 149 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVG-EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG---V-PEFSPYDVIF 149 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC---C-GGGCCEEEEE
T ss_pred CcCEEEEecCCchHHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc---c-ccCCCeEEEE
Confidence 478999999999999999998752 24679999999999999999876543 4699999998752 2 2357899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+..+++++. +.+.++|||||++++....
T Consensus 150 ~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 150 VTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp ECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred EcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 999999884 4678899999999997543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.1e-14 Score=121.04 Aligned_cols=103 Identities=16% Similarity=0.230 Sum_probs=85.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCC--CCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFA--PESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~--~~~fD~ 183 (352)
+.+|||+|||+|..+..+++.+ ++.+|+++|+|+.+++.|++++...+ .++.+..+|+... ++.. +++||+
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~~~fD~ 129 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQAL--PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL---GEKLELYPLFDV 129 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHC--TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGS---HHHHTTSCCEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH---HHhcccCCCccE
Confidence 6799999999999999999976 57899999999999999999876543 4699999998742 1211 468999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|++.... .+...+++.+.++|+|||++++.+.
T Consensus 130 I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 130 LFIDAAK-----GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EEEEGGG-----SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred EEECCCH-----HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 9987654 3567899999999999999999754
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=124.45 Aligned_cols=107 Identities=14% Similarity=0.070 Sum_probs=81.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-C--ceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-D--RCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~--~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||+|||+|.++..++. .+.+|+++|+|+.+++.|++++...+ . ++.++++|+.+....+....++||+|
T Consensus 154 ~~~VLDlgcGtG~~sl~la~----~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAA----AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHH----TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCcEEEcccccCHHHHHHHH----cCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 67999999999999999998 45599999999999999999976533 2 48999999874210000014689999
Q ss_pred Eehhh----------hhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 185 LLIFV----------LDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 185 ~~~~~----------l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++.-- +++. .+...+++.+.++|+|||++++...
T Consensus 230 i~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp EECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 98321 1222 5678999999999999999877643
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=124.95 Aligned_cols=102 Identities=23% Similarity=0.363 Sum_probs=82.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..+++. +..+|+|+|+| .|++.|+++....+ .+++++.+|+.+ +++++++||+|+
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~---g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~~D~Iv 110 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKH---GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLED----VHLPFPKVDIII 110 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHT---CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTT----SCCSSSCEEEEE
T ss_pred CCEEEEecCccHHHHHHHHHC---CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhh----ccCCCCcccEEE
Confidence 779999999999999988884 33489999999 59999998876533 569999999974 344567899999
Q ss_pred ehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 186 LIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 186 ~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
+..+.+++ ....+..++..+.++|+|||.++.
T Consensus 111 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 97554443 335678899999999999999974
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-14 Score=120.61 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=84.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCC-CCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFA-PESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~-~~~fD~V 184 (352)
+.+|||+|||+|..+..+++.+. ++.+|+|+|+++.+++.|++++...+ .+++++++|+.+....++.. .++||+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLS-SGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCC-SSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCEEEEecCCccHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 78999999999999999999763 27899999999999999999876533 46999999986421001101 1579999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++... ......+++.+.++|+|||++++.+..
T Consensus 138 ~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 138 FIDAD-----KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEcCC-----cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 98654 245678999999999999999987543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-14 Score=119.10 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=83.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|..+..+++.+. ++.+|+++|+|+.+++.|++++...+ .++++..+|+.+. ++..++ ||+|+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~-fD~v~ 131 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAIS-ISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI---AAGQRD-IDILF 131 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSC-TTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH---HTTCCS-EEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH---hccCCC-CCEEE
Confidence 67999999999999999999762 27899999999999999998876432 4689999998642 222245 99999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+... ..+...+++.+.++|+|||++++.+.
T Consensus 132 ~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 132 MDCD-----VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp EETT-----TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred EcCC-----hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 8632 25667899999999999999998653
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=118.50 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC------CCceEEEEecCCCCCCCCCCCCCc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK------PDRCHAFVCDVTSEDWNPPFAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~ 180 (352)
++.+|||+|||+|..+..+++..+ +..+|+|+|+|+.+++.|+++.... ..++.+.++|+... ...+++
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~ 151 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVG-CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG----YAEEAP 151 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC----CGGGCC
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC----cccCCC
Confidence 478999999999999999998753 4469999999999999999887642 24799999998742 223568
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
||+|++...++++ ++.+.++|||||++++....
T Consensus 152 fD~i~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 152 YDAIHVGAAAPVV--------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEEEECSBBSSC--------CHHHHHTEEEEEEEEEEESC
T ss_pred cCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEec
Confidence 9999998887766 35788999999999997654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-14 Score=120.84 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=84.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCC--CCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPP--FAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~--~~~~~fD~ 183 (352)
+.+|||+|||+|..+..+++.+. ++.+|+++|+|+.+++.|++++...+ .++++.++|+.+....+. ...++||+
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALP-KDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCC-TTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 67999999999999999999763 37899999999999999999876543 459999999854210000 01178999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|++... ..+...+++.+.++|+|||++++.+..
T Consensus 144 v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 144 IYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 996542 356788999999999999999997654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-14 Score=125.81 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=85.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCC-----CCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFA-----PES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~-----~~~ 180 (352)
+.+|||||||+|..+..+++.+. ++.+|+++|+|+.+++.|++++...+ .+++++++|+.+. ++.. +++
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~---l~~~~~~~~~~~ 136 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALP-DDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT---LHSLLNEGGEHQ 136 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSC-TTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHH---HHHHHHHHCSSC
T ss_pred cCEEEEeeCCcCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH---HHHHhhccCCCC
Confidence 67999999999999999999773 37899999999999999999876543 5799999998642 1111 478
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
||+|++... ..+...+++.+.++|+|||+|++.+..
T Consensus 137 fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 137 FDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp EEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 999998643 356678999999999999999997643
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-14 Score=114.84 Aligned_cols=100 Identities=12% Similarity=0.195 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC--------CCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP--------FAP 178 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~--------~~~ 178 (352)
++.+|||+|||+|.++..+++.++ ++.+++|+|+|+ +++. .++.+.++|+.+ .+ +++
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~-~~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~----~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIG-GKGRIIACDLLP-MDPI---------VGVDFLQGDFRD----ELVMKALLERVGD 86 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-TTCEEEEEESSC-CCCC---------TTEEEEESCTTS----HHHHHHHHHHHTT
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhC-CCCeEEEEECcc-cccc---------CcEEEEEccccc----chhhhhhhccCCC
Confidence 377999999999999999998753 467999999999 6532 468899999874 22 456
Q ss_pred CcceEEEehhhhhccChh---H------HHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 179 ESLDIVLLIFVLDAINPN---K------MQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~---~------~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++||+|++...+++.... . ...+++++.++|+|||.+++..+.
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 799999998877765221 1 168899999999999999997654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.2e-13 Score=111.97 Aligned_cols=139 Identities=13% Similarity=0.152 Sum_probs=103.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||||||+|-++..++... +..+|+++|+++.|++.+++++...+.+..+.+.|.... .+.++||+|++.
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~--p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~-----~p~~~~DvaL~l 205 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLP--AETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLED-----RLDEPADVTLLL 205 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCC--TTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTS-----CCCSCCSEEEET
T ss_pred CceeeeeccCccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeeccc-----CCCCCcchHHHH
Confidence 6799999999999999998865 788999999999999999999887777789999998642 246889999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
-+++++..+.....+ ++...|+|+|+++--..-.- .| ...+ ..-.-...|.+.+.+.|..
T Consensus 206 kti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl--------~G---------rs~g--m~~~Y~~~~e~~~~~~g~~ 265 (281)
T 3lcv_B 206 KTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSL--------GQ---------RSKG--MFQNYSQSFESQARERSCR 265 (281)
T ss_dssp TCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC------------------------C--HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhh--------cC---------CCcc--hhhHHHHHHHHHHHhcCCc
Confidence 999999433334455 89999999998886432100 00 0000 0011245677778888887
Q ss_pred eEEeee
Q psy11741 268 EKQNLI 273 (352)
Q Consensus 268 ~~~~~~ 273 (352)
+....+
T Consensus 266 ~~~~~~ 271 (281)
T 3lcv_B 266 IQRLEI 271 (281)
T ss_dssp EEEEEE
T ss_pred eeeeee
Confidence 666654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-13 Score=113.03 Aligned_cols=104 Identities=21% Similarity=0.270 Sum_probs=75.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC----C---------
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN----P--------- 174 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~----~--------- 174 (352)
+.+|||+|||+|.++..+++.++.++.+|+|+|+|+.+ ...++.+.++|+.+.... .
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~ 92 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNN 92 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CCTTCEEEECCTTTTSSCCC-----------C
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CCCCceEEEccccchhhhhhccccccccccch
Confidence 67999999999999999998762116899999999831 124688999998753200 0
Q ss_pred --------CCCCCcceEEEehhhhhccCh--hH-------HHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 175 --------PFAPESLDIVLLIFVLDAINP--NK-------MQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 175 --------~~~~~~fD~V~~~~~l~~~~~--~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+++++||+|++..++++... .+ ...+++.+.++|+|||.+++..+.
T Consensus 93 ~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 93 SVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 034578999999877665311 11 234889999999999999986543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=130.69 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++...+ .+++++.+|+.+. ++ +++||+|
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~---~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~----~~-~~~fD~I 228 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQA---GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV----SL-PEQVDII 228 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHT---TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC----CC-SSCEEEE
T ss_pred CCCEEEEecCcccHHHHHHHHc---CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC----cc-CCCeEEE
Confidence 3789999999999999988873 556999999999 9999998876543 6799999999752 33 3589999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
++..+++++..++....+..++++|||||.+++.
T Consensus 229 vs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 229 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp ECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred EEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9988878776667778888999999999999863
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.1e-14 Score=120.49 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=84.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCC-C-----CCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPP-F-----APE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~-~-----~~~ 179 (352)
+.+|||||||+|..+..+++.+. ++.+|+++|+|+.+++.|++++...+ .+++++.+|+.+. ++ + .++
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~---l~~l~~~~~~~~ 155 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIP-EDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV---LDEMIKDEKNHG 155 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSC-TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH---HHHHHHSGGGTT
T ss_pred cCEEEEeCCCcCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH---HHHHHhccCCCC
Confidence 67999999999999999999873 37899999999999999999876543 4799999998641 11 1 147
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+||+|++... ..+...+++.+.++|+|||++++.+.
T Consensus 156 ~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 156 SYDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp CBSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred CEEEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 8999998643 24667899999999999999999753
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-13 Score=121.71 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=85.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||||||+|.++..+++.+ ++.++++||+++.+++.|++++... .++++++.+|+.+.. ...++++||+|++
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~--p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l--~~~~~~~fDvIi~ 165 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVY--PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA--ESFTPASRDVIIR 165 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHS--TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH--HTCCTTCEEEEEE
T ss_pred CCEEEEEECCcCHHHHHHHHHC--CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH--hhccCCCCCEEEE
Confidence 3499999999999999999866 7779999999999999999987642 468999999987421 1223678999998
Q ss_pred hhhhhccChhH--HHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 187 IFVLDAINPNK--MQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 187 ~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
....+...+.. ...+++.++++|+|||++++...
T Consensus 166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 64433222222 26899999999999999998754
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=118.88 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=79.8
Q ss_pred CCeEEEEcCCccccHHHHHhh---cCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCC-CCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEH---CKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFA-PESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~---~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~fD~ 183 (352)
+.+|||||||+|..+..+++. +. ++.+|+|+|+|+.|++.|+.. ..+++++++|+.+.. .++.. ..+||+
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~-~~~~V~gvD~s~~~l~~a~~~----~~~v~~~~gD~~~~~-~l~~~~~~~fD~ 155 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMG-IDCQVIGIDRDLSRCQIPASD----MENITLHQGDCSDLT-TFEHLREMAHPL 155 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTT-CCCEEEEEESCCTTCCCCGGG----CTTEEEEECCSSCSG-GGGGGSSSCSSE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcC-CCCEEEEEeCChHHHHHHhcc----CCceEEEECcchhHH-HHHhhccCCCCE
Confidence 679999999999999999886 22 678999999999999888721 367999999987521 02322 347999
Q ss_pred EEehhhhhccChhHHHHHHHHHHH-hcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYK-YLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~ 220 (352)
|++... |. +...++.++.+ +|||||+|++.+.
T Consensus 156 I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 156 IFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 998654 32 56789999997 9999999999754
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.2e-13 Score=118.02 Aligned_cols=102 Identities=16% Similarity=0.345 Sum_probs=84.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|+++++..+ .++.++++|+.+. +. .++||+|+
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~--~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~----~~-~~~~D~Vi 191 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYS--KPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV----EL-KDVADRVI 191 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHT--CCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC----CC-TTCEEEEE
T ss_pred CCCEEEEecCcCCHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc----Cc-cCCceEEE
Confidence 47899999999999999999975 45699999999999999999987654 5789999999853 22 56899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+.... ....++..+.+.|+|||++++.+..
T Consensus 192 ~d~p~------~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 192 MGYVH------KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp ECCCS------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ECCcc------cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 86432 4456888999999999999997654
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=117.01 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=82.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcC---CCCeEEEEEeCCHHHHHHHHhccccC------CCceEEEEecCCCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCK---NDNVFVYGCDFSENAVNILKEHEEYK------PDRCHAFVCDVTSEDWNPPFA 177 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~~~ 177 (352)
++.+|||+|||+|.++..+++... .+..+|+|+|+|+.+++.|+++.... ..++.+..+|+..........
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 378999999999999999998642 12459999999999999999987653 357999999987421000023
Q ss_pred CCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 178 PESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 178 ~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.++||+|++...++++ ++.+.++|+|||++++...
T Consensus 160 ~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 160 LGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEc
Confidence 5789999998887765 4678899999999999754
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-13 Score=121.09 Aligned_cols=108 Identities=18% Similarity=0.244 Sum_probs=84.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-----CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-----PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+|||||||+|..+..+++.. +..+++++|+++.+++.|++++... .++++++.+|+.+. ++..+++||
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~--~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~---l~~~~~~fD 153 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYK--SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF---LENVTNTYD 153 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCT--TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH---HHHCCSCEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcC--CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH---HHhCCCCce
Confidence 6799999999999999998864 5679999999999999999987542 46899999998642 112257899
Q ss_pred EEEehhhhhccChhHH--HHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAINPNKM--QHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|++....+..+...+ ..+++.++++|+|||++++...
T Consensus 154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 9999554332222233 6899999999999999999754
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-13 Score=122.38 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=81.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++. .+..|+|+|+|+.+++.|++++...+....+.++|+.+. ++...+.||+|++.
T Consensus 215 g~~VLDlg~GtG~~sl~~a~----~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~---l~~~~~~fD~Ii~d 287 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAAR----KGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPT---LRGLEGPFHHVLLD 287 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHH---HHTCCCCEEEEEEC
T ss_pred CCeEEEcccchhHHHHHHHH----cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHH---HHHhcCCCCEEEEC
Confidence 78999999999999999998 455699999999999999999876554456778888642 11113349999984
Q ss_pred hhhhccC-------hhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 188 FVLDAIN-------PNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 188 ~~l~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
-....-+ ..+...++..+.++|+|||+|++.+...
T Consensus 288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 3211100 1456788999999999999999766543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-13 Score=114.69 Aligned_cols=100 Identities=23% Similarity=0.271 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++.. + .+|+|+|+|+.+++.|+++....+ .++.+..+|+.. .++ ....||+|+
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~--~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~~-~~~~fD~Ii 163 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIV--K-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK---GFP-PKAPYDVII 163 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHH--C-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG---CCG-GGCCEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHh--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc---CCC-CCCCccEEE
Confidence 47799999999999999999875 3 689999999999999999876543 468999999732 222 134599999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+..+++++. ..+.++|+|||++++....
T Consensus 164 ~~~~~~~~~--------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 164 VTAGAPKIP--------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp ECSBBSSCC--------HHHHHTEEEEEEEEEEECS
T ss_pred ECCcHHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 999988873 2678999999999997654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=123.24 Aligned_cols=106 Identities=19% Similarity=0.241 Sum_probs=80.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-----CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-----PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+|||||||+|..+..+++.. +..+|+++|+|+.+++.|++++... .++++++.+|+.+. ++..+++||
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~--~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~---l~~~~~~fD 183 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHE--SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF---LKNHKNEFD 183 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCT--TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH---HHHCTTCEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcC--CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH---HHhcCCCce
Confidence 6799999999999999999864 5679999999999999999987542 46799999998641 222357899
Q ss_pred EEEehhhhhccCh-hHH--HHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINP-NKM--QHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~-~~~--~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|++... .++.+ ..+ ..+++.++++|+|||++++..
T Consensus 184 ~Ii~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 184 VIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EEEECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 9998553 22221 222 688999999999999999974
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=118.50 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=84.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCC--CcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAP--ESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~--~~fD~ 183 (352)
+.+|||+|||+|..+..+++.+. ++.+++++|+|+.+++.|++++...+ .++.+..+|+.+....++..+ ++||+
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLP-PDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSC-TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 67999999999999999999763 36799999999999999998875432 468999998753111122222 78999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
|++... ..+...+++.+.++|+|||++++.+..
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 997643 256788999999999999999997643
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-13 Score=121.99 Aligned_cols=108 Identities=20% Similarity=0.225 Sum_probs=83.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+|||||||+|..+..+++.. +..+|+++|+|+.+++.|++++.. ..++++++++|+.+.. ...++++||
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~--~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l--~~~~~~~fD 196 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHA--SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFL--KNAAEGSYD 196 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCT--TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHH--HTSCTTCEE
T ss_pred CCEEEEECCCccHHHHHHHHcC--CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHH--HhccCCCcc
Confidence 6899999999999999999864 567999999999999999998753 2467999999986421 012357899
Q ss_pred EEEehhhhhccChhH--HHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNK--MQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|++........... ...+++.+.++|+|||+|++..
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999854321111122 4789999999999999999963
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-13 Score=122.21 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=82.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++.. ..++++++.+|+.+. ++..+++||
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~--~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~---l~~~~~~fD 170 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHP--SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF---MKQNQDAFD 170 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCT--TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH---HHTCSSCEE
T ss_pred CCEEEEECCCchHHHHHHHHcC--CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH---HhhCCCCce
Confidence 6799999999999999999864 567999999999999999998753 246899999998641 222357899
Q ss_pred EEEehhhhhccChh--HHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 183 IVLLIFVLDAINPN--KMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+|++....+..+.. ....+++.+.++|+|||++++...+
T Consensus 171 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 171 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 99985443221111 2357899999999999999997533
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-13 Score=124.44 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=82.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-C--ceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-D--RCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~--~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||+|||+|.++..++.. ...+|+|+|+|+.|++.|++++...+ . +++++++|+.+....+.....+||+|
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~---ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMG---GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHT---TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 789999999999999999983 22389999999999999999987654 2 79999999864210011114589999
Q ss_pred Eehhhh-----hccC--hhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFVL-----DAIN--PNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~l-----~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++.-.. .+.. ...+..++..+.++|+|||++++....
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 983211 1121 245667888999999999999997654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=122.26 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=83.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-----CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-----PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+|||||||+|.++..+++.. +..+|+++|+|+.+++.|++++... .++++++++|+.+. ++..+++||
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~--~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~---l~~~~~~fD 191 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYK--SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF---LENVTNTYD 191 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCT--TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH---HHHCCSCEE
T ss_pred CCEEEEEcCCccHHHHHHHHcC--CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH---HhhcCCCce
Confidence 6799999999999999999864 5679999999999999999987541 36799999998641 112257899
Q ss_pred EEEehhhhhccC-hhHH--HHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 183 IVLLIFVLDAIN-PNKM--QHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~l~~~~-~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+|++.... .+. .... ..+++.+.++|+|||++++...+
T Consensus 192 vIi~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 192 VIIVDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EEEEECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEECCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 99986431 221 1222 68999999999999999997543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-12 Score=116.60 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC-ceEEEEecCCCCCCCCCC-CCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD-RCHAFVCDVTSEDWNPPF-APESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~-~~~~fD~V 184 (352)
++.+|||+| |+|.++..++... +..+|+|+|+|+.|++.|++++...+. +++++++|+.+ .++. .+++||+|
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~--~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~---~l~~~~~~~fD~V 245 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSG--LPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRK---PLPDYALHKFDTF 245 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHT--CCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTS---CCCTTTSSCBSEE
T ss_pred CCCEEEEEC-CCCHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhh---hchhhccCCccEE
Confidence 378999999 9999999998754 556999999999999999999775432 79999999975 2332 24689999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEE-EEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGM-VLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~-l~~~~ 219 (352)
+++..++.. ....+++++.++|+|||. +++..
T Consensus 246 i~~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 246 ITDPPETLE---AIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp EECCCSSHH---HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred EECCCCchH---HHHHHHHHHHHHcccCCeEEEEEE
Confidence 997654433 358899999999999994 45543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-13 Score=119.50 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=83.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+|||||||+|.++..+++.. +..+|+++|+++.+++.|++++.. ..++++++.+|+... ++..+++||
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~--~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~---l~~~~~~fD 150 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHP--SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH---IAKSENQYD 150 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCT--TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH---HHTCCSCEE
T ss_pred CCEEEEECCchHHHHHHHHhCC--CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH---HhhCCCCee
Confidence 6799999999999999998853 457999999999999999998732 246899999998642 222357899
Q ss_pred EEEehhhhhccChh--HHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAINPN--KMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|++....+..... ....+++.++++|+|||++++...
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 99995443221111 125789999999999999999743
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.9e-13 Score=121.24 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=86.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||+|||+|.++..++.... +..+++|+|+|+.|++.|++++...+ .++.+.++|+.+ ++.+.+.||+
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~-~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~----~~~~~~~~D~ 275 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLG-PTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARH----LPRFFPEVDR 275 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHC-TTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGG----GGGTCCCCSE
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhC-CCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhh----CccccCCCCE
Confidence 34578999999999999999988652 45689999999999999999987654 379999999984 3444567999
Q ss_pred EEehhhhhcc--C----hhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAI--N----PNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~--~----~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|+++-..... + ......+++.+.++|+|||.+++.+.
T Consensus 276 Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 276 ILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp EEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred EEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9995432211 1 12347889999999999999999754
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-13 Score=115.97 Aligned_cols=107 Identities=18% Similarity=0.130 Sum_probs=84.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCC---CCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPP---FAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~---~~~~~fD 182 (352)
+.+|||||||+|..+..+++.+. ++.+++++|+|+.+++.|++++...+ .+++++.+|+.+....+. ...++||
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIP-DDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSC-TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 67999999999999999999873 37899999999999999999876544 469999999864210010 0147899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|++... ..+...+++.+.++|+|||++++.+.
T Consensus 150 ~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 150 FGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred EEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 9998532 35678899999999999999999754
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-13 Score=121.75 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=84.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc------CCCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY------KPDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
+.+|||||||+|..+..+++.. +..+++++|+++.+++.|++++.. ..++++++.+|+.+. ++..+++|
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~--~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~---l~~~~~~f 152 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHP--TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY---LERTEERY 152 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTST--TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH---HHHCCCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhcC--CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH---HHhcCCCc
Confidence 6799999999999999999864 567999999999999999998753 146899999998742 22236789
Q ss_pred eEEEehhhhhc---cChhH--HHHHHHHHHHhcCCCEEEEEEe
Q psy11741 182 DIVLLIFVLDA---INPNK--MQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~---~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+|++....+. -+... ...+++.++++|+|||++++..
T Consensus 153 D~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99999765443 11111 3688999999999999999964
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-13 Score=117.93 Aligned_cols=115 Identities=14% Similarity=0.123 Sum_probs=85.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|..+..+++... ...+|+|+|+|+.+++.++++....+ .++.+..+|+...........++||+|+
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~-~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMK-NKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTT-TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcC-CCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 478999999999999999998762 23699999999999999999887644 4799999998642100000256899999
Q ss_pred ehh------hhhc---cC-------hhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 186 LIF------VLDA---IN-------PNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 186 ~~~------~l~~---~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
+.. ++.. .+ ...+..+++.+.++|||||.+++.+.+.
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 852 1110 00 1345789999999999999999987653
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-13 Score=115.35 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCC----CCeEEEEEeCCHHHHHHHHhccccC------CCceEEEEecCCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKN----DNVFVYGCDFSENAVNILKEHEEYK------PDRCHAFVCDVTSEDWNPPF 176 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~----~~~~v~gvD~s~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~~ 176 (352)
++.+|||+|||+|.++..+++.... +..+|+++|+++.+++.|+++.... ..++.+..+|+... .+
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~- 159 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG---YP- 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC---CG-
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC---CC-
Confidence 4789999999999999999886420 0258999999999999999886542 25799999998752 22
Q ss_pred CCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 177 APESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 177 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
..++||+|++...++++. +++.++|||||++++....
T Consensus 160 ~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 160 PNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp GGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred cCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEec
Confidence 137899999999888773 6788999999999997643
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.1e-13 Score=113.64 Aligned_cols=107 Identities=22% Similarity=0.320 Sum_probs=84.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCC-----------CCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSED-----------WNP 174 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~-----------~~~ 174 (352)
+.+|||+|||+|..+..+++.+. ++.+|+++|+++.+++.|++++...+ .++.+..+|+.+.. |..
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALP-EDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSC-TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 77999999999999999999763 36799999999999999999876543 35899999875410 111
Q ss_pred CCCC--CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 175 PFAP--ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 175 ~~~~--~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.+++ ++||+|++.... .+...+++.+.++|+|||++++.+.
T Consensus 140 ~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp TTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred cccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 1233 789999987432 4567889999999999999999754
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-12 Score=119.66 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=87.5
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||+|||+|..+..++..+. ...+|+|+|+|+.+++.+++++...+ .++.+.++|+.... ..+++++||+
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~-~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~--~~~~~~~fD~ 333 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMK-NKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAP--EIIGEEVADK 333 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTT-TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCS--SSSCSSCEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcC-CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcc--hhhccCCCCE
Confidence 44578999999999999999999762 22699999999999999999987644 47999999987532 1134478999
Q ss_pred EEe------hhhhhccC-------hhH-------HHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 184 VLL------IFVLDAIN-------PNK-------MQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 184 V~~------~~~l~~~~-------~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|++ ..++++.+ +.+ +..+++.+.++|||||.+++.+++.
T Consensus 334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 996 22333221 111 2678999999999999999987654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=107.61 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=69.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|+++.. ++.++++|+.+ + +++||+|+++
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~---~~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~~----~---~~~~D~v~~~ 117 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLL---GAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSE----I---SGKYDTWIMN 117 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHT---TBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGG----C---CCCEEEEEEC
T ss_pred CCEEEEEeCCccHHHHHHHHc---CCCEEEEEECCHHHHHHHHHhcC----CCEEEECcHHH----C---CCCeeEEEEC
Confidence 789999999999999999884 23479999999999999999875 68999999874 2 2689999999
Q ss_pred hhhhccChhHHHHHHHHHHHhc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYL 209 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~L 209 (352)
..+++........+++++.+++
T Consensus 118 ~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 118 PPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp CCC-------CHHHHHHHHHHE
T ss_pred CCchhccCchhHHHHHHHHHhc
Confidence 8888885444457889999988
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.7e-13 Score=119.05 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=81.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+|||||||+|..+..+++.. +..+|+++|+|+.+++.|++++.. ..++++++.+|+... ++..+++||
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~--~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~---l~~~~~~fD 165 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHD--SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY---VRKFKNEFD 165 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTST--TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH---GGGCSSCEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcC--CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH---HhhCCCCce
Confidence 6799999999999999999864 457999999999999999998742 246899999997642 222357899
Q ss_pred EEEehhhhhccCh-h--HHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAINP-N--KMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~~~-~--~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|++.....++.+ . ....+++.++++|+|||++++...
T Consensus 166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 9998533221211 1 226889999999999999999743
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=119.77 Aligned_cols=101 Identities=23% Similarity=0.369 Sum_probs=79.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+++|||||||+|.++..+|+. ...+|+|||.|+ |++.|++.++..+ .+|+++.+|+.+. .+ +++||+|+
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~a---GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~----~l-pe~~Dviv 154 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQA---GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV----EL-PEQVDAIV 154 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHT---TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC----CC-SSCEEEEE
T ss_pred CCEEEEeCCCccHHHHHHHHh---CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee----cC-CccccEEE
Confidence 889999999999998877774 234899999996 8899988776543 6799999999853 33 36899999
Q ss_pred ehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 186 LIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 186 ~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
+-.+-..+ ....+..++....++|+|||.++.
T Consensus 155 sE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 155 SEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred eecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 84433333 335778888889999999999885
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-13 Score=118.91 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=80.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----------CCCceEEEEecCCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----------KPDRCHAFVCDVTSEDWNPPF 176 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----------~~~~v~~~~~d~~~~~~~~~~ 176 (352)
+.+|||||||+|.++..+++. +..+++++|+++.+++.|++++.. ..++++++.+|+.+. ++.
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~---~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~---l~~ 149 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQH---DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF---IKN 149 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTS---CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH---HHH
T ss_pred CCeEEEEcCCcCHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHH---hcc
Confidence 679999999999999999885 456999999999999999998711 246799999997641 112
Q ss_pred CCCcceEEEehhhhhccChhH--HHHHHHHHHHhcCCCEEEEEEe
Q psy11741 177 APESLDIVLLIFVLDAINPNK--MQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 177 ~~~~fD~V~~~~~l~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+++||+|++....+.-.... ...+++.++++|+|||++++..
T Consensus 150 -~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 150 -NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp -CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 56899999865432111122 2678999999999999999964
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=117.56 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..++... +..+|+|+|+|+.|++.|++++...+ .++.+.++|+.+ ++.++++||+|
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~--~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~----~~~~~~~fD~I 290 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRR--YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ----LSQYVDSVDFA 290 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTT--CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG----GGGTCSCEEEE
T ss_pred CCCEEEEccCcCcHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh----CCcccCCcCEE
Confidence 37899999999999999999854 33489999999999999999987655 479999999984 44556899999
Q ss_pred Eehhhhhcc-----ChhH-HHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHH
Q psy11741 185 LLIFVLDAI-----NPNK-MQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVK 258 (352)
Q Consensus 185 ~~~~~l~~~-----~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (352)
+++-.++.. ...+ ...+++.+.++| ||.+++.. .+.+.+.
T Consensus 291 i~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~--------------------------------~~~~~~~ 336 (373)
T 3tm4_A 291 ISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT--------------------------------TEKKAIE 336 (373)
T ss_dssp EEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEE--------------------------------SCHHHHH
T ss_pred EECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE--------------------------------CCHHHHH
Confidence 996432211 0122 367888999988 45444432 2456677
Q ss_pred HHHHhCCCceEEe
Q psy11741 259 TMFESAGFVEKQN 271 (352)
Q Consensus 259 ~ll~~~Gf~~~~~ 271 (352)
..+.+.||.....
T Consensus 337 ~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 337 EAIAENGFEIIHH 349 (373)
T ss_dssp HHHHHTTEEEEEE
T ss_pred HHHHHcCCEEEEE
Confidence 8889999997765
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-13 Score=115.69 Aligned_cols=107 Identities=12% Similarity=0.132 Sum_probs=84.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCC--CCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFA--PESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~--~~~fD~ 183 (352)
+.+|||+|||+|..+..+++.+. ++.+|+++|+|+.+++.|++++...+ .++.+..+|+.+....++.. .++||+
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALP-ADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSC-TTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 67999999999999999998763 36799999999999999999876543 57999999875321011101 168999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|++... ......+++.+.++|+|||++++.+.
T Consensus 149 v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 149 AVVDAD-----KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEECSC-----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 998543 25667899999999999999999754
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.8e-13 Score=122.33 Aligned_cols=110 Identities=19% Similarity=0.132 Sum_probs=84.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC--ceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD--RCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|.++..++.. ...+|+|+|+|+.+++.|++++...+. ++.++++|+.+....+....++||+|+
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~---g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIA---GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 789999999999999999984 234899999999999999999876543 799999998642100001246899999
Q ss_pred ehh---------hhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 186 LIF---------VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 186 ~~~---------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
+.- +.++. .....++..+.++|+|||.+++.+.+.
T Consensus 295 ~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGL--RAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp ECCCCSCSSGGGHHHHH--HHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred ECCCCCCCCHHHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 842 12222 567789999999999999999876553
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=112.01 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=81.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++. +.+++++|+|+.+++.|+++....+ .++.+...|+.+. ..++++||+|
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v 162 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEV----AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA----EVPEGIFHAA 162 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH----SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS----CCCTTCBSEE
T ss_pred CCCEEEEeCCCccHHHHHHHHh----CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhc----ccCCCcccEE
Confidence 4789999999999999999985 5689999999999999999876543 5789999998742 1135689999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++. . .+...+++.+.++|+|||.+++....
T Consensus 163 ~~~-----~--~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 163 FVD-----V--REPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp EEC-----S--SCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred EEC-----C--cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 972 2 35567899999999999999997643
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=109.80 Aligned_cols=101 Identities=18% Similarity=0.301 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||||||+|.++..++ ++..++|+|+++.|++.+++++...+.+..+..+|.... + +.++||+|++
T Consensus 105 ~p~~VLDlGCG~gpLal~~~-----~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~----~-~~~~~DvvLl 174 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER-----GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCA----P-PAEAGDLALI 174 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT-----TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTS----C-CCCBCSEEEE
T ss_pred CCCeEEEecCCccHHHHHhc-----cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccC----C-CCCCcchHHH
Confidence 37899999999999988776 456899999999999999999877678889999998742 2 3569999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.-++|++........+ ++...|+++|+++-.
T Consensus 175 lk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 175 FKLLPLLEREQAGSAM-ALLQSLNTPRMAVSF 205 (253)
T ss_dssp ESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEE
T ss_pred HHHHHHhhhhchhhHH-HHHHHhcCCCEEEEc
Confidence 9999999444444444 888899999887764
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=114.33 Aligned_cols=101 Identities=22% Similarity=0.333 Sum_probs=80.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcc---e
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESL---D 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f---D 182 (352)
+.+|||+|||+|.++..++.. ++.+|+|+|+|+.+++.|++++...+ .++.++++|+.+. + .++| |
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~---~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~---~---~~~f~~~D 194 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF---SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---F---KEKFASIE 194 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH---SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---G---GGGTTTCC
T ss_pred CCEEEEEeCchhHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh---c---ccccCCCC
Confidence 679999999999999999986 57899999999999999999987644 3599999998752 1 2578 9
Q ss_pred EEEehh------------hhhccC------hhHHHHHHHHHH-HhcCCCEEEEEE
Q psy11741 183 IVLLIF------------VLDAIN------PNKMQHVINQVY-KYLKPGGMVLFR 218 (352)
Q Consensus 183 ~V~~~~------------~l~~~~------~~~~~~~l~~~~-~~LkpgG~l~~~ 218 (352)
+|+++- +. |-+ ..+...+++++. +.|+|||++++.
T Consensus 195 ~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 195 MILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp EEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred EEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 999961 11 111 112237899999 999999999985
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=108.39 Aligned_cols=128 Identities=17% Similarity=0.233 Sum_probs=95.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.+++.+|+. ...+|+++|+|+.+++.+++|++.++ .++++.++|+.+. + ..+.||.|
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~---g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~----~-~~~~~D~V 196 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVY---GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF----P-GENIADRI 196 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHH---TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC----C-CCSCEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHh----c-cccCCCEE
Confidence 3889999999999999999885 44589999999999999999987644 5689999998753 2 35789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++... .....++..+.++|+|||++.+.+....... .....+.+..+.++.
T Consensus 197 i~~~p------~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~-----------------------~~~~~e~i~~~~~~~ 247 (278)
T 3k6r_A 197 LMGYV------VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------PREPFETFKRITKEY 247 (278)
T ss_dssp EECCC------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------TTTTHHHHHHHHHHT
T ss_pred EECCC------CcHHHHHHHHHHHcCCCCEEEEEeeeccccc-----------------------chhHHHHHHHHHHHc
Confidence 87532 2223566777899999999887654321100 012356778888999
Q ss_pred CCceEEe
Q psy11741 265 GFVEKQN 271 (352)
Q Consensus 265 Gf~~~~~ 271 (352)
|+.+...
T Consensus 248 g~~v~~~ 254 (278)
T 3k6r_A 248 GYDVEKL 254 (278)
T ss_dssp TCEEEEE
T ss_pred CCcEEEE
Confidence 9987544
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=119.67 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=84.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC---ceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD---RCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||+|||+|.++..++.. ...+|+|+|+|+.+++.|++++...+. +++++++|+.+....+....++||+|
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~---g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMG---GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 789999999999999999984 234899999999999999999876544 79999999874210010114689999
Q ss_pred Eehhh---------hhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFV---------LDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~---------l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++.-- .... ..+..++..+.++|+|||++++.+..
T Consensus 298 i~dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGAC--RGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp EECCSSTTTCSSSSSCCC--THHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EECCCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 98521 1111 57788999999999999999997654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=120.80 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=85.3
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||+|||+|..+..+++.+. ....|+|+|+|+.+++.+++++...+..+.+.++|+.... ...+++||+|+
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~-~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~---~~~~~~FD~Il 175 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMG-GKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALA---EAFGTYFHRVL 175 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTT-TCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHH---HHHCSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhh---hhccccCCEEE
Confidence 3588999999999999999998764 3358999999999999999998765434888888876421 11257899999
Q ss_pred eh------hhhhc-------cChh-------HHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 186 LI------FVLDA-------INPN-------KMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 186 ~~------~~l~~-------~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
+. .++.. .+++ .+..+|+.+.++|||||+|+.++.+.
T Consensus 176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 61 12211 1111 23789999999999999999987654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=106.58 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC---C-CC---CC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP---P-FA---PE 179 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~---~-~~---~~ 179 (352)
++.+|||+|||+|.++..+++ .+.+|+|+|+++.. ...++.++++|+.+..... . +. .+
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~----~~~~V~gvD~~~~~----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNS----LARKIISIDLQEME----------EIAGVRFIRCDIFKETIFDDIDRALREEGIE 90 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTT----TCSEEEEEESSCCC----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred CCCEEEEEeecCCHHHHHHHH----cCCcEEEEeccccc----------cCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence 378999999999999999988 46699999999741 1256899999997531000 0 00 14
Q ss_pred cceEEEehhhhh--------cc-ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 180 SLDIVLLIFVLD--------AI-NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 180 ~fD~V~~~~~l~--------~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+||+|++..... +. .......+++.+.++|||||.|++..+.
T Consensus 91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 899999954221 11 1123467889999999999999987654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=127.94 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=84.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||+|||+|.++..++.. ...+|+++|+|+.+++.|++++...+ .++.++++|+.+ .++...++||+|
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~---ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~---~l~~~~~~fD~I 613 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLG---GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLA---WLREANEQFDLI 613 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHH---HHHHCCCCEEEE
T ss_pred CCcEEEeeechhHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH---HHHhcCCCccEE
Confidence 789999999999999998873 23369999999999999999987654 369999999875 122335789999
Q ss_pred Eehh-----------hhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIF-----------VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~-----------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++.- ++... .+...++..+.++|+|||+|++....
T Consensus 614 i~DPP~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 614 FIDPPTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp EECCCSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EECCccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 9843 12222 57788999999999999999987543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-12 Score=119.29 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=83.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...+ .++.++++|+.+....+...+++||+|++
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~----~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG----FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH----EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEeeeccCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 779999999999999999984 4589999999999999999987644 45899999987421000011468999998
Q ss_pred hhh---------hhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFV---------LDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~---------l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.-- .... .....++..+.++|+|||++++.+..
T Consensus 286 dpP~~~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAY--RAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCCSCCSTTSHHHHH--HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCCChhHHHHHH--HHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 321 1112 56778999999999999999998654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.7e-12 Score=117.99 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=87.8
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
..++.+|||+|||+|..+..+++.. ++.+|+|+|+|+.+++.+++++...+.++.+.++|+.... ..+++++||+|
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~--~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~--~~~~~~~fD~V 319 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVA--PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS--QWCGEQQFDRI 319 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHC--TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTH--HHHTTCCEEEE
T ss_pred CCCcCeEEEECCCchHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhch--hhcccCCCCEE
Confidence 4458899999999999999999976 4579999999999999999998766667889999987421 00345789999
Q ss_pred Eeh------hhhhccC-------hhH-------HHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 185 LLI------FVLDAIN-------PNK-------MQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 185 ~~~------~~l~~~~-------~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
++. .++++.+ +.+ +..+++.+.++|||||++++.+.+.
T Consensus 320 l~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 320 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 962 2333221 111 2588999999999999999987654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-12 Score=112.77 Aligned_cols=99 Identities=20% Similarity=0.316 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++....+ .+++++++|+.+. ++ .+||+|
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~----~~--~~fD~v 97 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEK----AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT----DL--PFFDTC 97 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHH----SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS----CC--CCCSEE
T ss_pred CCCEEEEEcCcccHHHHHHHhh----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc----cc--hhhcEE
Confidence 3789999999999999999984 4589999999999999999875432 4799999999743 22 279999
Q ss_pred EehhhhhccChhHHHHHH--------------HHH--HHhcCCCEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVI--------------NQV--YKYLKPGGMVL 216 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l--------------~~~--~~~LkpgG~l~ 216 (352)
+++...+.. .+-...++ +++ +++|+|||.++
T Consensus 98 v~nlpy~~~-~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 98 VANLPYQIS-SPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp EEECCGGGH-HHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred EEecCcccc-hHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 996443322 12222332 222 36899999764
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-12 Score=119.20 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=85.5
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||+|||+|..+..+++.+. ....|+++|+|+.+++.+++++...+ .++.+..+|+.... ...+++||+
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~-~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~---~~~~~~FD~ 178 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMK-GKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV---PHFSGFFDR 178 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHT-TCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH---HHHTTCEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh---hhccccCCE
Confidence 34588999999999999999998763 34689999999999999999987643 56888888876421 112578999
Q ss_pred EEehh------hhhc-------cCh-------hHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 184 VLLIF------VLDA-------INP-------NKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 184 V~~~~------~l~~-------~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|++.. ++.. .++ ..+..+|..+.++|||||+|+.++.+.
T Consensus 179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 99732 1111 011 123478999999999999999987654
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-12 Score=105.61 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=73.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCC--------eEEEEEeCCHHHHHHHHhccccCCCceEEE-EecCCCCCCC----C
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDN--------VFVYGCDFSENAVNILKEHEEYKPDRCHAF-VCDVTSEDWN----P 174 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~--------~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~-~~d~~~~~~~----~ 174 (352)
+.+|||+|||+|.++..+++..+ .. .+|+|+|+|+.+ ...++.+. .+|+...... .
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~-~~~~~~~~~~~~v~~vD~s~~~----------~~~~~~~~~~~d~~~~~~~~~~~~ 91 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVN-AAGTDPSSPVGFVLGVDLLHIF----------PLEGATFLCPADVTDPRTSQRILE 91 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTT-TTCCCTTSCCCEEEEECSSCCC----------CCTTCEEECSCCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHhc-cccccccCCCceEEEEechhcc----------cCCCCeEEEeccCCCHHHHHHHHH
Confidence 78999999999999999999763 21 689999999831 11457888 8887632100 0
Q ss_pred CCCCCcceEEEehhhhhccC--hhHH-------HHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 175 PFAPESLDIVLLIFVLDAIN--PNKM-------QHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 175 ~~~~~~fD~V~~~~~l~~~~--~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
.+++++||+|++...++... ..+. ..+++++.++|+|||.+++..+..
T Consensus 92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 12346899999865443210 0122 578999999999999999986543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-13 Score=115.87 Aligned_cols=102 Identities=17% Similarity=0.135 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc---CCCceEEE--EecCCCCCCCCCCCCCcc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY---KPDRCHAF--VCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~---~~~~v~~~--~~d~~~~~~~~~~~~~~f 181 (352)
++.+|||+|||+|.++..+++. .+|+|+|+|+ |+..++++... .+.++.++ ++|+.. ++ +++|
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~-----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~----l~--~~~f 149 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ-----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK----ME--PFQA 149 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS-----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG----CC--CCCC
T ss_pred CCCEEEEeccCCCHHHHHHHHc-----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh----CC--CCCc
Confidence 4789999999999999999884 4799999999 65444332111 11268899 889874 33 6789
Q ss_pred eEEEehhhhhccCh---hHH--HHHHHHHHHhcCCCE--EEEEEeCC
Q psy11741 182 DIVLLIFVLDAINP---NKM--QHVINQVYKYLKPGG--MVLFRDYG 221 (352)
Q Consensus 182 D~V~~~~~l~~~~~---~~~--~~~l~~~~~~LkpgG--~l~~~~~~ 221 (352)
|+|+|..+ ++... +.. ..+|+.+.++||||| .|++..+.
T Consensus 150 D~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 150 DTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 99999766 33211 111 147899999999999 99997665
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-12 Score=117.96 Aligned_cols=111 Identities=17% Similarity=0.291 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCC-CCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPF-APESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~-~~~~fD~V 184 (352)
++.+|||+|||+|..+..+++.+. ....|+|+|+|+.+++.+++++...+ .++.+.++|+.. ++. .+++||.|
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~-~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~----~~~~~~~~fD~I 191 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMN-NEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV----FGAAVPEMFDAI 191 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTT-TCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTT----HHHHSTTCEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHH----hhhhccccCCEE
Confidence 488999999999999999999763 34689999999999999999987543 478999999874 221 35789999
Q ss_pred Eeh------hhhhcc-------Ch-------hHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 185 LLI------FVLDAI-------NP-------NKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 185 ~~~------~~l~~~-------~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
++. .++... ++ ..+..+|..+.++|||||+|++.+.+.
T Consensus 192 l~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 192 LLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp EEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 972 122211 11 124578999999999999999987654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-12 Score=114.25 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc---cCCCceEEE--EecCCCCCCCCCCCCCcc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE---YKPDRCHAF--VCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~---~~~~~v~~~--~~d~~~~~~~~~~~~~~f 181 (352)
++.+|||||||+|.++..+++. .+|+|+|+|+ |+..+++... ..+.++.++ ++|+.. ++ +++|
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~-----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~----l~--~~~f 141 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR-----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHT----LP--VERT 141 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS-----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTT----SC--CCCC
T ss_pred CCCEEEEeCcCCCHHHHHHHHc-----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhH----CC--CCCC
Confidence 4789999999999999998884 4799999999 6433322211 111268888 889874 33 6789
Q ss_pred eEEEehhhhhccCh---hHH--HHHHHHHHHhcCCCE--EEEEEeCC
Q psy11741 182 DIVLLIFVLDAINP---NKM--QHVINQVYKYLKPGG--MVLFRDYG 221 (352)
Q Consensus 182 D~V~~~~~l~~~~~---~~~--~~~l~~~~~~LkpgG--~l~~~~~~ 221 (352)
|+|+|..+ ++... +.. ..+|..+.++|+||| .|++..+.
T Consensus 142 D~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 142 DVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred cEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 99999766 33211 111 138899999999999 99997665
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-11 Score=109.71 Aligned_cols=108 Identities=18% Similarity=0.295 Sum_probs=84.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC---CCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN---DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||+|||+|.++..+++.+.. ...+++|+|+++.+++.|+.+....+.++.+.++|.... ...++||+|
T Consensus 131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-----~~~~~fD~I 205 (344)
T 2f8l_A 131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-----LLVDPVDVV 205 (344)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-----CCCCCEEEE
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-----cccCCccEE
Confidence 679999999999999999887631 127899999999999999998765445688999998642 235789999
Q ss_pred EehhhhhccChhHH----------------HHHHHHHHHhcCCCEEEEEEeC
Q psy11741 185 LLIFVLDAINPNKM----------------QHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 185 ~~~~~l~~~~~~~~----------------~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+++-.+++++.++. ..++..+.+.|+|||++++..+
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 99876655532221 2689999999999999998754
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=111.69 Aligned_cols=97 Identities=15% Similarity=0.314 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++.. ++ .+.+|+|+|+|+.+++.|++++...+ .++.++++|+.+. . ++||+|
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~----~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~----~---~~fD~V 262 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK----NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV----D---VKGNRV 262 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT----TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC----C---CCEEEE
T ss_pred CCCEEEEccCccCHHHHh-cc----CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh----c---CCCcEE
Confidence 378999999999999998 77 56699999999999999999987654 4799999999752 1 789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++.-. .....++..+.++|+|||.+++.++.
T Consensus 263 i~dpP------~~~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 263 IMNLP------KFAHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp EECCT------TTGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred EECCc------HhHHHHHHHHHHHcCCCCEEEEEEee
Confidence 98521 22237888899999999999987654
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.6e-12 Score=109.02 Aligned_cols=94 Identities=11% Similarity=0.061 Sum_probs=77.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+.+|||||||+|..+..+++. + .+|+++|+++.+++.|++++.. ..++++++.+|+... . ++||
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~---~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~------~-~~fD 141 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKY---D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD------I-KKYD 141 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTS---S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC------C-CCEE
T ss_pred CCEEEEEeCCcCHHHHHHHhC---C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH------H-hhCC
Confidence 679999999999999988885 3 6999999999999999987643 246799999998742 1 7899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|++.. .++..+++.++++|+|||++++..
T Consensus 142 ~Ii~d~-------~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 142 LIFCLQ-------EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp EEEESS-------CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEECC-------CChHHHHHHHHHhcCCCcEEEEEc
Confidence 999852 122348999999999999999964
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=107.14 Aligned_cols=117 Identities=8% Similarity=0.102 Sum_probs=82.2
Q ss_pred CCCeEEEEcCCc------cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEE-EEecCCCCCCCCCCCCC
Q psy11741 107 STKNILEIGCGV------GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHA-FVCDVTSEDWNPPFAPE 179 (352)
Q Consensus 107 ~~~~vLD~GcG~------G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~-~~~d~~~~~~~~~~~~~ 179 (352)
++.+|||+|||+ |. ..+++..+ ++.+|+|+|+|+. . .++++ +++|+.+. ++ .+
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~-~~~~V~gvDis~~--------v----~~v~~~i~gD~~~~----~~-~~ 122 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLP-TGTLLVDSDLNDF--------V----SDADSTLIGDCATV----HT-AN 122 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSC-TTCEEEEEESSCC--------B----CSSSEEEESCGGGC----CC-SS
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcC-CCCEEEEEECCCC--------C----CCCEEEEECccccC----Cc-cC
Confidence 478999999955 55 44455442 3679999999997 1 25788 99999853 22 36
Q ss_pred cceEEEehhhhhc--------c-ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeee
Q psy11741 180 SLDIVLLIFVLDA--------I-NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVY 250 (352)
Q Consensus 180 ~fD~V~~~~~l~~--------~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
+||+|++....+. . .......+++.+.++|||||.|++..+..
T Consensus 123 ~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~---------------------------- 174 (290)
T 2xyq_A 123 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH---------------------------- 174 (290)
T ss_dssp CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS----------------------------
T ss_pred cccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc----------------------------
Confidence 8999999643211 1 12345689999999999999999975432
Q ss_pred ccCHHHHHHHHHhCCCceEEee
Q psy11741 251 FFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 251 ~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
....++..++++.||..+...
T Consensus 175 -~~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 175 -SWNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp -SCCHHHHHHHTTEEEEEEEEE
T ss_pred -CCHHHHHHHHHHcCCcEEEEE
Confidence 123467888888898766543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=108.54 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.|++++...+ .++.+.++|+.+....+++.+++||+|+
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~----~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLAT----QAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHT----TSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCEEEECCCCCCHHHHHHHh----hCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 367999999999999999998 45699999999999999999986544 4799999999864322345567899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+.---.. ...+++.+.+ ++|+++++++
T Consensus 362 ~dPPr~g-----~~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 362 LDPARAG-----AAGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp ECCCTTC-----CHHHHHHHHH-HCCSEEEEEE
T ss_pred ECCCCcc-----HHHHHHHHHh-cCCCeEEEEE
Confidence 8432111 1234555443 7899998886
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.5e-12 Score=110.83 Aligned_cols=103 Identities=15% Similarity=0.097 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeC----CHHHHHHHHhccccC-CCceEEEEe-cCCCCCCCCCCCCCc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDF----SENAVNILKEHEEYK-PDRCHAFVC-DVTSEDWNPPFAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~----s~~~l~~a~~~~~~~-~~~v~~~~~-d~~~~~~~~~~~~~~ 180 (352)
++.+|||||||+|.++..+++. .+|+|+|+ ++.+++.+. .... .+++.+.++ |+.. + +.++
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~-----~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~----l--~~~~ 148 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGL-----KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFF----I--PPER 148 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTS-----TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTT----S--CCCC
T ss_pred CCCEEEEEcCCCCHHHHHHHhc-----CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEecccccc----C--CcCC
Confidence 4789999999999999999884 37999999 565442111 1111 146888888 8763 2 2568
Q ss_pred ceEEEehhhhh---cc-ChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 181 LDIVLLIFVLD---AI-NPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 181 fD~V~~~~~l~---~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
||+|+|..+++ +. +......+|..+.++|||||.|++..+..
T Consensus 149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 99999976543 11 01111257899999999999999976654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-11 Score=105.33 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=65.9
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP- 157 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~- 157 (352)
.|..+..+....+..+.. .++.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|+++....+
T Consensus 23 ~fl~~~~i~~~i~~~~~~---------~~~~~VLDiG~G~G~lt~~La~----~~~~v~~vDi~~~~~~~a~~~~~~~~~ 89 (299)
T 2h1r_A 23 HLLKNPGILDKIIYAAKI---------KSSDIVLEIGCGTGNLTVKLLP----LAKKVITIDIDSRMISEVKKRCLYEGY 89 (299)
T ss_dssp CEECCHHHHHHHHHHHCC---------CTTCEEEEECCTTSTTHHHHTT----TSSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred ceecCHHHHHHHHHhcCC---------CCcCEEEEEcCcCcHHHHHHHh----cCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 455555555444443322 2378999999999999999998 45699999999999999999875433
Q ss_pred CceEEEEecCCCCCCCCCCCCCcceEEEehhhhh
Q psy11741 158 DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLD 191 (352)
Q Consensus 158 ~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~ 191 (352)
.+++++.+|+.+. + ..+||+|+++...+
T Consensus 90 ~~v~~~~~D~~~~----~--~~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 90 NNLEVYEGDAIKT----V--FPKFDVCTANIPYK 117 (299)
T ss_dssp CCEEC----CCSS----C--CCCCSEEEEECCGG
T ss_pred CceEEEECchhhC----C--cccCCEEEEcCCcc
Confidence 5799999998742 2 24899999865443
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.5e-10 Score=106.26 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=74.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|++++...+..+.+.++|+.+. + ..+||+|++.
T Consensus 291 ~~~VLDlgcG~G~~sl~la~----~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~---~---~~~fD~Vv~d 360 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAK----RGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREV---S---VKGFDTVIVD 360 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTC---C---CTTCSEEEEC
T ss_pred CCEEEEeeccchHHHHHHHH----cCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHc---C---ccCCCEEEEc
Confidence 67999999999999999998 556999999999999999999875443389999999753 1 1289999984
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
-.-..+ ...+++.+. .|+|||+++++.
T Consensus 361 PPr~g~----~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 361 PPRAGL----HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp CCTTCS----CHHHHHHHH-HHCCSEEEEEES
T ss_pred CCccch----HHHHHHHHH-hcCCCcEEEEEC
Confidence 332111 123455554 489999999963
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.9e-10 Score=100.46 Aligned_cols=164 Identities=15% Similarity=0.229 Sum_probs=102.1
Q ss_pred CCeEEEEcCCccccHHHHHhhc-------------CCCCeEEEEEeCCHHHHHHHHhcccc-------------CCCceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHC-------------KNDNVFVYGCDFSENAVNILKEHEEY-------------KPDRCH 161 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~-------------~~~~~~v~gvD~s~~~l~~a~~~~~~-------------~~~~v~ 161 (352)
+.+|+|+|||+|..+..++... ..+..+|...|+........=+.+.. ...+.-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 6789999999999988873321 12678899999876654332111111 001112
Q ss_pred EEEecCCCCCCCCCCCCCcceEEEehhhhhccC--h----------------------------------hHHHHHHHHH
Q psy11741 162 AFVCDVTSEDWNPPFAPESLDIVLLIFVLDAIN--P----------------------------------NKMQHVINQV 205 (352)
Q Consensus 162 ~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~--~----------------------------------~~~~~~l~~~ 205 (352)
|..+.....- ...+++++||+|+++.++|+++ + .|+..+|+..
T Consensus 133 f~~gvpgSFy-~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFY-RRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTT-SCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhh-cccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333221 2346789999999999999995 2 1667789999
Q ss_pred HHhcCCCEEEEEEeCCCCchh-------------hHh-----hhcCccccCceeecCCCeeeeccCHHHHHHHHH-hCCC
Q psy11741 206 YKYLKPGGMVLFRDYGRYDLV-------------QLR-----FKKGRCLQDNFYARGDGTLVYFFTREEVKTMFE-SAGF 266 (352)
Q Consensus 206 ~~~LkpgG~l~~~~~~~~~~~-------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~~Gf 266 (352)
++.|+|||.+++...+..+.. .+. +.....+....+. .-....++.+.+++..+++ +.||
T Consensus 212 a~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d-~f~~P~y~ps~~E~~~~l~~~~~F 290 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRD-GFNIPVYAPSLQDFKEVVDANGSF 290 (374)
T ss_dssp HHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHS-SCCCCBCCCCHHHHHHHHHHHCSE
T ss_pred HHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcc-cCCccccCCCHHHHHHHHHhcCCc
Confidence 999999999999887664321 010 0001111111100 0123456789999999998 5999
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
.+.....
T Consensus 291 ~I~~le~ 297 (374)
T 3b5i_A 291 AIDKLVV 297 (374)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9887754
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=100.37 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=72.1
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
.|..+..+....+..+.. .++.+|||||||+|.++..+++. +.+|+|+|+++.|++.+++++.. ..
T Consensus 31 nfL~d~~i~~~Iv~~l~~---------~~~~~VLEIG~G~G~lT~~La~~----~~~V~aVEid~~li~~a~~~~~~-~~ 96 (295)
T 3gru_A 31 CFLIDKNFVNKAVESANL---------TKDDVVLEIGLGKGILTEELAKN----AKKVYVIEIDKSLEPYANKLKEL-YN 96 (295)
T ss_dssp CEECCHHHHHHHHHHTTC---------CTTCEEEEECCTTSHHHHHHHHH----SSEEEEEESCGGGHHHHHHHHHH-CS
T ss_pred cccCCHHHHHHHHHhcCC---------CCcCEEEEECCCchHHHHHHHhc----CCEEEEEECCHHHHHHHHHHhcc-CC
Confidence 466666665555544322 23789999999999999999984 56899999999999999998763 36
Q ss_pred ceEEEEecCCCCCCCCCCCCCcceEEEehhhh
Q psy11741 159 RCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL 190 (352)
Q Consensus 159 ~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l 190 (352)
+++++++|+.+ +++++.+||.|+++...
T Consensus 97 ~v~vi~gD~l~----~~~~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 97 NIEIIWGDALK----VDLNKLDFNKVVANLPY 124 (295)
T ss_dssp SEEEEESCTTT----SCGGGSCCSEEEEECCG
T ss_pred CeEEEECchhh----CCcccCCccEEEEeCcc
Confidence 79999999984 34455679999986443
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.1e-12 Score=108.87 Aligned_cols=102 Identities=13% Similarity=0.094 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCC-CCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFA-PESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++.. ...+++++++|+.+ ++++ +++| .|+
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~----~~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~----~~~~~~~~f-~vv 98 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKI----SKQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQ----FQFPNKQRY-KIV 98 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHH----SSEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTT----TTCCCSSEE-EEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHh----CCeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhh----cCcccCCCc-EEE
Confidence 3779999999999999999984 4689999999999999988765 33679999999984 3333 3678 555
Q ss_pred ehhhhhccChhH----------HHHHH----HHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNK----------MQHVI----NQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~----------~~~~l----~~~~~~LkpgG~l~~~~ 219 (352)
++-- .+.+... ...++ +.+.++|+|||.+.+..
T Consensus 99 ~n~P-y~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 99 GNIP-YHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EECC-SSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EeCC-ccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 5321 1111111 12233 66889999999877643
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-10 Score=98.76 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 169 (352)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++.... .+++++++|+.+
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~-~~v~~~~~D~~~ 87 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQR----CNFVTAIEIDHKLCKTTENKLVDH-DNFQVLNKDILQ 87 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH----SSEEEEECSCHHHHHHHHHHTTTC-CSEEEECCCGGG
T ss_pred CCCEEEEEeCCchHHHHHHHHc----CCeEEEEECCHHHHHHHHHhhccC-CCeEEEEChHHh
Confidence 4789999999999999999984 468999999999999999887542 579999999985
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.6e-10 Score=105.57 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=80.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC-----------CCeEEEEEeCCHHHHHHHHhccccCCC---ceEEEEecCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN-----------DNVFVYGCDFSENAVNILKEHEEYKPD---RCHAFVCDVTSEDWN 173 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~-----------~~~~v~gvD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~~~ 173 (352)
+.+|||+|||+|.++..+++.+.. ...+++|+|+++.+++.|+.+....+. ++.+.++|.....
T Consensus 172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~-- 249 (445)
T 2okc_A 172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE-- 249 (445)
T ss_dssp TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC--
T ss_pred CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc--
Confidence 679999999999999988875421 134799999999999999988654333 6788999987432
Q ss_pred CCCCCCcceEEEehhhhhccCh---------------hHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 174 PPFAPESLDIVLLIFVLDAINP---------------NKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 174 ~~~~~~~fD~V~~~~~l~~~~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
. .++||+|+++-.+..... .....+++.+.++|+|||++.+..+
T Consensus 250 --~-~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 250 --P-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp --C-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --c-cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 1 348999999754443211 1124789999999999999988753
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-09 Score=98.56 Aligned_cols=163 Identities=16% Similarity=0.143 Sum_probs=103.4
Q ss_pred CCeEEEEcCCccccHHHHHhhc---------------CCCCeEEEEEeCC-----------HHHHHHHHhccccCCCceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHC---------------KNDNVFVYGCDFS-----------ENAVNILKEHEEYKPDRCH 161 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~---------------~~~~~~v~gvD~s-----------~~~l~~a~~~~~~~~~~v~ 161 (352)
..+|+|+||++|..+..++... ..|..+|+..|+. +.+.+.+++.... ..+.-
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~-~~~~~ 131 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR-KIGSC 131 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC-CTTSE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC-CCCce
Confidence 4689999999999998877651 1256889999998 5555544332111 11235
Q ss_pred EEEecCCCCCCCCCCCCCcceEEEehhhhhccChh-------------------------------------HHHHHHHH
Q psy11741 162 AFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPN-------------------------------------KMQHVINQ 204 (352)
Q Consensus 162 ~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-------------------------------------~~~~~l~~ 204 (352)
|+.+.....- ...++++++|+|+++.++|+++.. |+..+|+.
T Consensus 132 f~~gvpgSFy-~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~ 210 (384)
T 2efj_A 132 LIGAMPGSFY-SRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI 210 (384)
T ss_dssp EEEECCSCTT-SCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhhh-hccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666544322 345779999999999999998411 22234777
Q ss_pred HHHhcCCCEEEEEEeCCCCch--h-----hHhhhc-----CccccCceeecCCCeeeeccCHHHHHHHHHhCC-CceEEe
Q psy11741 205 VYKYLKPGGMVLFRDYGRYDL--V-----QLRFKK-----GRCLQDNFYARGDGTLVYFFTREEVKTMFESAG-FVEKQN 271 (352)
Q Consensus 205 ~~~~LkpgG~l~~~~~~~~~~--~-----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G-f~~~~~ 271 (352)
.++.|+|||.+++...+..+. . .+.... ...+....+ ..-..+.++.+.+++..+++++| |.+...
T Consensus 211 Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~-dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 211 HSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKL-DSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHH-HTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhh-cccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 799999999999998876554 2 111110 001111100 01122446789999999999984 788776
Q ss_pred ee
Q psy11741 272 LI 273 (352)
Q Consensus 272 ~~ 273 (352)
..
T Consensus 290 e~ 291 (384)
T 2efj_A 290 ET 291 (384)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=8.3e-10 Score=95.55 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=68.4
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+..+....+..+-. .++.+|||||||+|.++..+++ .+.+|+|+|+++.|++.++++... ..
T Consensus 10 nFL~d~~i~~~iv~~~~~---------~~~~~VLEIG~G~G~lt~~La~----~~~~V~avEid~~~~~~~~~~~~~-~~ 75 (255)
T 3tqs_A 10 HFLHDSFVLQKIVSAIHP---------QKTDTLVEIGPGRGALTDYLLT----ECDNLALVEIDRDLVAFLQKKYNQ-QK 75 (255)
T ss_dssp CEECCHHHHHHHHHHHCC---------CTTCEEEEECCTTTTTHHHHTT----TSSEEEEEECCHHHHHHHHHHHTT-CT
T ss_pred ccccCHHHHHHHHHhcCC---------CCcCEEEEEcccccHHHHHHHH----hCCEEEEEECCHHHHHHHHHHHhh-CC
Confidence 566666665555544422 2378999999999999999998 456999999999999999998764 46
Q ss_pred ceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 159 RCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 159 ~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+++++++|+.+..+.....+++|| |+++
T Consensus 76 ~v~~i~~D~~~~~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 76 NITIYQNDALQFDFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp TEEEEESCTTTCCGGGSCCSSCEE-EEEE
T ss_pred CcEEEEcchHhCCHHHhccCCCeE-EEec
Confidence 799999999864221111135688 5543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.4e-10 Score=102.02 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=81.5
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCC--C----------------------------------CeEEEEEeCCHHHHHH
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKN--D----------------------------------NVFVYGCDFSENAVNI 148 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~--~----------------------------------~~~v~gvD~s~~~l~~ 148 (352)
..++..|||++||+|.+++.++..... | ..+|+|+|+|+.|++.
T Consensus 199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~ 278 (393)
T 3k0b_A 199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI 278 (393)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence 345788999999999999888765421 1 1469999999999999
Q ss_pred HHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhh-cc-ChhHHHHHHHHHHHhcCC--CEEEEEEeCCC
Q psy11741 149 LKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLD-AI-NPNKMQHVINQVYKYLKP--GGMVLFRDYGR 222 (352)
Q Consensus 149 a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~-~~-~~~~~~~~l~~~~~~Lkp--gG~l~~~~~~~ 222 (352)
|++++...+ .++.+.++|+.+. +. ..+||+|+++--.. .+ ..++...+.+.+.+.||+ ||.+++.+...
T Consensus 279 Ar~Na~~~gl~~~I~~~~~D~~~~----~~-~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 353 (393)
T 3k0b_A 279 AKQNAVEAGLGDLITFRQLQVADF----QT-EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE 353 (393)
T ss_dssp HHHHHHHTTCTTCSEEEECCGGGC----CC-CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred HHHHHHHcCCCCceEEEECChHhC----CC-CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 999987654 3589999999853 22 35899999973211 11 124566677777777765 88888766543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=99.34 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=83.8
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCC------------------------------------CCeEEEEEeCCHHHHHH
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKN------------------------------------DNVFVYGCDFSENAVNI 148 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~------------------------------------~~~~v~gvD~s~~~l~~ 148 (352)
..++..|||.+||+|.+++.++....+ ...+++|+|+|+.|++.
T Consensus 192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~ 271 (384)
T 3ldg_A 192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI 271 (384)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence 345789999999999999888765421 11469999999999999
Q ss_pred HHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehh--hhhccChhHHHHHHHHHHHhcCC--CEEEEEEeCCC
Q psy11741 149 LKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIF--VLDAINPNKMQHVINQVYKYLKP--GGMVLFRDYGR 222 (352)
Q Consensus 149 a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~--~l~~~~~~~~~~~l~~~~~~Lkp--gG~l~~~~~~~ 222 (352)
|++++...+ ..+.+.++|+.+. +. ..+||+|+++- ....-+..+...+++.+.+.||+ ||.+++.+...
T Consensus 272 Ar~Na~~~gl~~~I~~~~~D~~~l----~~-~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 346 (384)
T 3ldg_A 272 ARKNAREVGLEDVVKLKQMRLQDF----KT-NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDT 346 (384)
T ss_dssp HHHHHHHTTCTTTEEEEECCGGGC----CC-CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred HHHHHHHcCCCCceEEEECChHHC----Cc-cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence 999987654 3699999999853 22 35899999963 22211335677788888888876 88888876543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.9e-10 Score=104.15 Aligned_cols=100 Identities=17% Similarity=0.250 Sum_probs=74.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++... ++.+++|+|+++.+++.| .++.+.++|+.... ..++||+|+++
T Consensus 40 ~~~vLD~gcGtG~~~~~~~~~~~-~~~~i~gvDi~~~~~~~a--------~~~~~~~~D~~~~~-----~~~~fD~Ii~N 105 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFREAHG-TAYRFVGVEIDPKALDLP--------PWAEGILADFLLWE-----PGEAFDLILGN 105 (421)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHC-SCSEEEEEESCTTTCCCC--------TTEEEEESCGGGCC-----CSSCEEEEEEC
T ss_pred CCEEEECCCCChHHHHHHHHHhC-CCCeEEEEECCHHHHHhC--------CCCcEEeCChhhcC-----ccCCCCEEEEC
Confidence 56999999999999999998653 356899999999988766 35889999987521 24689999994
Q ss_pred hhhh---c-------cChh-----------------HHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 188 FVLD---A-------INPN-----------------KMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 188 ~~l~---~-------~~~~-----------------~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
--.. . +..+ ....+++.+.++|+|||.+++..+.
T Consensus 106 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 106 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 2111 1 1111 1236789999999999999887643
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-10 Score=104.32 Aligned_cols=101 Identities=13% Similarity=0.041 Sum_probs=78.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC---------------C-CceEEEEecCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK---------------P-DRCHAFVCDVTSED 171 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~---------------~-~~v~~~~~d~~~~~ 171 (352)
+.+|||+|||+|..++.++... ++.+|+++|+++.+++.+++|++.. + .++.+.++|+....
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~--~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~ 125 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALET--PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 125 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHS--SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence 7899999999999999999975 4567999999999999999998754 4 24889999986421
Q ss_pred CCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 172 WNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 172 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
....++||+|++.- . .....++..+.+.|+|||++++..
T Consensus 126 ---~~~~~~fD~I~lDP-~-----~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 126 ---AERHRYFHFIDLDP-F-----GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp ---HHSTTCEEEEEECC-S-----SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---HhccCCCCEEEeCC-C-----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 11135799999531 1 223577888899999999888864
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=95.60 Aligned_cols=114 Identities=10% Similarity=0.097 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||+|||+|..+..++..+. +..+|+++|+++.+++.++++++..+ .++.++.+|+.......+ ..++||.|
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~-~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~-~~~~fD~V 178 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLK-NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP-RYHEVHYI 178 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG-GGTTEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcccc-ccCCCCEE
Confidence 3488999999999999999998753 44689999999999999999987654 579999999875321110 01579999
Q ss_pred Eeh------hhhhcc---------Chh-------HHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 185 LLI------FVLDAI---------NPN-------KMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 185 ~~~------~~l~~~---------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
++. .++..- +++ .+..+|..+.++|+ ||+|+..+.+.
T Consensus 179 l~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 179 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp EECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 972 122110 111 12356777877776 89988877653
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-09 Score=100.18 Aligned_cols=113 Identities=12% Similarity=0.167 Sum_probs=83.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCC------------------------------------CCeEEEEEeCCHHHHHH
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKN------------------------------------DNVFVYGCDFSENAVNI 148 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~------------------------------------~~~~v~gvD~s~~~l~~ 148 (352)
..++.+|||+|||+|.+++.++....+ ...+|+|+|+++.|++.
T Consensus 193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~ 272 (385)
T 3ldu_A 193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI 272 (385)
T ss_dssp CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence 345789999999999999988775421 12579999999999999
Q ss_pred HHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhhh-cc-ChhHHHHHHHHHHHhcCC--CEEEEEEeCCC
Q psy11741 149 LKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLD-AI-NPNKMQHVINQVYKYLKP--GGMVLFRDYGR 222 (352)
Q Consensus 149 a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~-~~-~~~~~~~~l~~~~~~Lkp--gG~l~~~~~~~ 222 (352)
|++++...+ .++++.++|+.+. +. +.+||+|+++--.. .+ +.++...+.+.+.+.|++ ||.+++.+...
T Consensus 273 Ar~Na~~~gl~~~i~~~~~D~~~l----~~-~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 347 (385)
T 3ldu_A 273 ARENAEIAGVDEYIEFNVGDATQF----KS-EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE 347 (385)
T ss_dssp HHHHHHHHTCGGGEEEEECCGGGC----CC-SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred HHHHHHHcCCCCceEEEECChhhc----Cc-CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence 999987644 3699999999853 22 45899999954322 12 225667778888888876 88877766543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=4e-10 Score=103.33 Aligned_cols=103 Identities=11% Similarity=0.098 Sum_probs=73.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCC----------
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPF---------- 176 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~---------- 176 (352)
+.+|||+|||+|.++..+++ ...+|+|+|+|+.+++.|++++...+ .+++++.+|+.+....+.-
T Consensus 214 ~~~vLDl~cG~G~~~l~la~----~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~ 289 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALAR----NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 289 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGG----GSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGS
T ss_pred CCEEEEccCCCCHHHHHHHh----cCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccc
Confidence 57899999999999999988 44589999999999999999987644 5799999998642100000
Q ss_pred --CCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 177 --APESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 177 --~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
.+.+||+|++.- +. ..+...+.+.|+++|.++....++
T Consensus 290 ~~~~~~fD~Vv~dP-------Pr-~g~~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 290 DLKSYQCETIFVDP-------PR-SGLDSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp CGGGCCEEEEEECC-------CT-TCCCHHHHHHHTTSSEEEEEESCH
T ss_pred ccccCCCCEEEECc-------Cc-cccHHHHHHHHhCCCEEEEEECCH
Confidence 013799998632 11 123445666777888887776553
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-09 Score=93.34 Aligned_cols=105 Identities=12% Similarity=0.116 Sum_probs=75.0
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+..+....+..+-. .++ +|||||||+|.++..+++ .+.+|+|+|+++.|++.++++.. ..
T Consensus 28 nfL~d~~i~~~Iv~~~~~---------~~~-~VLEIG~G~G~lt~~L~~----~~~~V~avEid~~~~~~l~~~~~--~~ 91 (271)
T 3fut_A 28 NFLVSEAHLRRIVEAARP---------FTG-PVFEVGPGLGALTRALLE----AGAEVTAIEKDLRLRPVLEETLS--GL 91 (271)
T ss_dssp CEECCHHHHHHHHHHHCC---------CCS-CEEEECCTTSHHHHHHHH----TTCCEEEEESCGGGHHHHHHHTT--TS
T ss_pred cccCCHHHHHHHHHhcCC---------CCC-eEEEEeCchHHHHHHHHH----cCCEEEEEECCHHHHHHHHHhcC--CC
Confidence 566666666555544422 236 999999999999999999 45689999999999999999875 35
Q ss_pred ceEEEEecCCCCCCCCCCCC-CcceEEEehhhhhccChhHHHHHHHH
Q psy11741 159 RCHAFVCDVTSEDWNPPFAP-ESLDIVLLIFVLDAINPNKMQHVINQ 204 (352)
Q Consensus 159 ~v~~~~~d~~~~~~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~l~~ 204 (352)
+++++++|+.+. ++++ ..+|.|+++.- ++++.+-+..++..
T Consensus 92 ~v~vi~~D~l~~----~~~~~~~~~~iv~NlP-y~iss~il~~ll~~ 133 (271)
T 3fut_A 92 PVRLVFQDALLY----PWEEVPQGSLLVANLP-YHIATPLVTRLLKT 133 (271)
T ss_dssp SEEEEESCGGGS----CGGGSCTTEEEEEEEC-SSCCHHHHHHHHHH
T ss_pred CEEEEECChhhC----ChhhccCccEEEecCc-ccccHHHHHHHhcC
Confidence 799999999853 2222 26888887653 34444444444443
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.93 E-value=5.1e-09 Score=94.43 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=108.3
Q ss_pred CCeEEEEcCCccccHHHHHhhc--------------CCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHC--------------KNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSED 171 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~--------------~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~ 171 (352)
..+|+|+||++|..+..+.... ..|..+|+..|+.......+-+.+.... .+.-|..+.....-
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 4689999999999888766641 2367899999999988887766654210 12345555443321
Q ss_pred CCCCCCCCcceEEEehhhhhccCh-------------------------------hHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 172 WNPPFAPESLDIVLLIFVLDAINP-------------------------------NKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 172 ~~~~~~~~~fD~V~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
...++++++|+|+++.++|+++. .|+..+|+..++.|+|||.+++...
T Consensus 132 -~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 132 -GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp -SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred -hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 34577999999999999999842 2456679999999999999999877
Q ss_pred CCCchhh-----------Hhh-----hcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC-ceEEeee
Q psy11741 221 GRYDLVQ-----------LRF-----KKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF-VEKQNLI 273 (352)
Q Consensus 221 ~~~~~~~-----------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf-~~~~~~~ 273 (352)
+..+... +.. .....+....+. .-..+.++++.+++..++++.|. .+.....
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d-~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~ 279 (359)
T 1m6e_X 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMD-KFNIPQYTPSPTEVEAEILKEGSFLIDHIEA 279 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTG-GGCCCCBCCCSHHHHHHHHHTTTBCCEEEEE
T ss_pred cCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhh-ccCCCccCCCHHHHHHHHHHcCCceEEEEEE
Confidence 6544211 110 001111111000 11234467899999999999965 7766544
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=100.11 Aligned_cols=101 Identities=16% Similarity=0.074 Sum_probs=79.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCC-eEEEEEeCCHHHHHHHHhccccCCC-c--eEEEEecCCCCCCCCC-CCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDN-VFVYGCDFSENAVNILKEHEEYKPD-R--CHAFVCDVTSEDWNPP-FAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~-~--v~~~~~d~~~~~~~~~-~~~~~fD 182 (352)
+.+|||++||+|.+++.++... .+ .+|+++|+++.+++.+++|++..+. + +.++.+|+.+.. . ...++||
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~--~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l---~~~~~~~fD 127 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLET--SCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFL---RKEWGFGFD 127 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHC--SCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHH---HSCCSSCEE
T ss_pred CCEEEECCCcccHHHHHHHHhC--CCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHH---HHhhCCCCc
Confidence 6799999999999999999864 34 5899999999999999999887552 3 899999986421 1 1145799
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|++.- . .....++..+.+.|+|||+|+++.
T Consensus 128 ~V~lDP-~-----g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 128 YVDLDP-F-----GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEEECC-S-----SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECC-C-----cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 999753 1 122457888999999999888865
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.8e-09 Score=90.53 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=59.2
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+..+....+..+.. .++.+|||+|||+|.++..+++. +..+|+|+|+++.|++.++++ . ..
T Consensus 12 nfl~d~~i~~~iv~~~~~---------~~~~~VLDiG~G~G~lt~~L~~~---~~~~v~avEid~~~~~~~~~~-~--~~ 76 (249)
T 3ftd_A 12 HLLVSEGVLKKIAEELNI---------EEGNTVVEVGGGTGNLTKVLLQH---PLKKLYVIELDREMVENLKSI-G--DE 76 (249)
T ss_dssp SCEECHHHHHHHHHHTTC---------CTTCEEEEEESCHHHHHHHHTTS---CCSEEEEECCCHHHHHHHTTS-C--CT
T ss_pred cccCCHHHHHHHHHhcCC---------CCcCEEEEEcCchHHHHHHHHHc---CCCeEEEEECCHHHHHHHHhc-c--CC
Confidence 455566555554443322 23789999999999999999984 246999999999999999987 2 46
Q ss_pred ceEEEEecCCCC
Q psy11741 159 RCHAFVCDVTSE 170 (352)
Q Consensus 159 ~v~~~~~d~~~~ 170 (352)
+++++++|+.+.
T Consensus 77 ~v~~i~~D~~~~ 88 (249)
T 3ftd_A 77 RLEVINEDASKF 88 (249)
T ss_dssp TEEEECSCTTTC
T ss_pred CeEEEEcchhhC
Confidence 799999999853
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=96.02 Aligned_cols=80 Identities=25% Similarity=0.362 Sum_probs=63.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~V~ 185 (352)
++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.|++.|++++...+.++.++++|+......+. ...++||.|+
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~--~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl 103 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHC--PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGIL 103 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHC--TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEEE
Confidence 37899999999999999999976 56799999999999999999987655789999999874210000 0115799998
Q ss_pred ehh
Q psy11741 186 LIF 188 (352)
Q Consensus 186 ~~~ 188 (352)
+..
T Consensus 104 ~D~ 106 (301)
T 1m6y_A 104 MDL 106 (301)
T ss_dssp EEC
T ss_pred EcC
Confidence 743
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.8e-09 Score=89.96 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=60.5
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+..+....+..+-. .++.+|||||||+|.++..+++.....+.+|+|+|+|+.|++.++++. ..
T Consensus 23 ~fL~d~~i~~~iv~~~~~---------~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~~ 90 (279)
T 3uzu_A 23 NFLVDHGVIDAIVAAIRP---------ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---GE 90 (279)
T ss_dssp CEECCHHHHHHHHHHHCC---------CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---GG
T ss_pred cccCCHHHHHHHHHhcCC---------CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---CC
Confidence 566666665555544322 237899999999999999999865211245999999999999999883 45
Q ss_pred ceEEEEecCCCC
Q psy11741 159 RCHAFVCDVTSE 170 (352)
Q Consensus 159 ~v~~~~~d~~~~ 170 (352)
+++++++|+.+.
T Consensus 91 ~v~~i~~D~~~~ 102 (279)
T 3uzu_A 91 LLELHAGDALTF 102 (279)
T ss_dssp GEEEEESCGGGC
T ss_pred CcEEEECChhcC
Confidence 799999999864
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-08 Score=98.36 Aligned_cols=111 Identities=10% Similarity=0.026 Sum_probs=79.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCC----------------CeEEEEEeCCHHHHHHHHhccccCCC-c-----eEEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKND----------------NVFVYGCDFSENAVNILKEHEEYKPD-R-----CHAFV 164 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~----------------~~~v~gvD~s~~~l~~a~~~~~~~~~-~-----v~~~~ 164 (352)
++.+|||.|||+|.++..+++.+... ..+++|+|+++.+++.|+.+....+. . +.+.+
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 37799999999999998887764211 13799999999999999987654332 2 67888
Q ss_pred ecCCCCCCCCCCCCCcceEEEehhhhhccC------------hhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 165 CDVTSEDWNPPFAPESLDIVLLIFVLDAIN------------PNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 165 ~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|.... .+...++||+|+++--+.... ......++..+.++|+|||++.+..+
T Consensus 249 gDtL~~---~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 249 GNTLGS---DGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp SCTTSH---HHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccc---ccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 887632 112346899999954322210 12234789999999999999888753
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-09 Score=93.19 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=60.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH-------HHHHHHHhccccCC--CceEEEEecCCCCCCCCC-CC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE-------NAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPP-FA 177 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~-------~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~-~~ 177 (352)
+.+|||+|||+|.++..++. .+.+|+|+|+|+ .+++.|+++....+ .+++++++|+.+. ++ ++
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~----~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~---l~~~~ 156 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLAS----LGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQ---MPALV 156 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHH----TTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHH---HHHHH
T ss_pred cCeEEEeeCccCHHHHHHHH----hCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHH---HHhhh
Confidence 67999999999999999998 456899999999 99999988865432 3599999998742 11 22
Q ss_pred C--CcceEEEehhhh
Q psy11741 178 P--ESLDIVLLIFVL 190 (352)
Q Consensus 178 ~--~~fD~V~~~~~l 190 (352)
+ ++||+|++.-.+
T Consensus 157 ~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 157 KTQGKPDIVYLDPMY 171 (258)
T ss_dssp HHHCCCSEEEECCCC
T ss_pred ccCCCccEEEECCCC
Confidence 3 689999995433
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.76 E-value=7.2e-09 Score=89.54 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=56.3
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+..+....+..+-. .++.+|||||||+|.++. +.. . ...+|+|+|+++.|++.++++.... .
T Consensus 2 nfL~d~~i~~~iv~~~~~---------~~~~~VLEIG~G~G~lt~-l~~-~--~~~~v~avEid~~~~~~a~~~~~~~-~ 67 (252)
T 1qyr_A 2 NFLNDQFVIDSIVSAINP---------QKGQAMVEIGPGLAALTE-PVG-E--RLDQLTVIELDRDLAARLQTHPFLG-P 67 (252)
T ss_dssp CEECCHHHHHHHHHHHCC---------CTTCCEEEECCTTTTTHH-HHH-T--TCSCEEEECCCHHHHHHHHTCTTTG-G
T ss_pred CCcCCHHHHHHHHHhcCC---------CCcCEEEEECCCCcHHHH-hhh-C--CCCeEEEEECCHHHHHHHHHHhccC-C
Confidence 455566555555544422 237799999999999999 643 2 2223999999999999999987542 4
Q ss_pred ceEEEEecCCC
Q psy11741 159 RCHAFVCDVTS 169 (352)
Q Consensus 159 ~v~~~~~d~~~ 169 (352)
+++++++|+.+
T Consensus 68 ~v~~i~~D~~~ 78 (252)
T 1qyr_A 68 KLTIYQQDAMT 78 (252)
T ss_dssp GEEEECSCGGG
T ss_pred ceEEEECchhh
Confidence 79999999985
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-08 Score=87.79 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=70.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||||||+|.++..+++.. +...++|+|++..+....... ...+.++.....++. ...+.+++||+|+|
T Consensus 74 ~~~~VLDLGaAPGGWSQvAa~~~--~~~~v~g~dVGvDl~~~pi~~-~~~g~~ii~~~~~~d----v~~l~~~~~DlVls 146 (277)
T 3evf_A 74 LEGRVIDLGCGRGGWCYYAAAQK--EVSGVKGFTLGRDGHEKPMNV-QSLGWNIITFKDKTD----IHRLEPVKCDTLLC 146 (277)
T ss_dssp CCEEEEEETCTTCHHHHHHHTST--TEEEEEEECCCCTTCCCCCCC-CBTTGGGEEEECSCC----TTTSCCCCCSEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhc--CCCcceeEEEeccCccccccc-CcCCCCeEEEeccce----ehhcCCCCccEEEe
Confidence 46799999999999999888753 344788888885431101000 011224555666653 23355788999999
Q ss_pred hhhhh----ccChhHHHHHHHHHHHhcCCC-EEEEEEeCCC
Q psy11741 187 IFVLD----AINPNKMQHVINQVYKYLKPG-GMVLFRDYGR 222 (352)
Q Consensus 187 ~~~l~----~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~ 222 (352)
..+.+ .++......+|+.+.++|+|| |.|++..+.+
T Consensus 147 D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p 187 (277)
T 3evf_A 147 DIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP 187 (277)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred cCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 76544 221111123578889999999 9999987763
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.8e-08 Score=85.42 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=82.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc------CCCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY------KPDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
+++||=||.|.|..++.+++.. +..+|+.||+++.+++.|++.+.. ..++++++.+|.... +....++|
T Consensus 84 pk~VLIiGgGdG~~~revlk~~--~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~---l~~~~~~y 158 (294)
T 3o4f_A 84 AKHVLIIGGGDGAMLREVTRHK--NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNF---VNQTSQTF 158 (294)
T ss_dssp CCEEEEESCTTSHHHHHHHTCT--TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTT---TSCSSCCE
T ss_pred CCeEEEECCCchHHHHHHHHcC--CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHH---HhhccccC
Confidence 7899999999999999999864 556899999999999999987632 347899999999864 33446789
Q ss_pred eEEEehhhhhccChh--HHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 182 DIVLLIFVLDAINPN--KMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+|++-..-..-... .-..+++.+++.|+|||+++...
T Consensus 159 DvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 159 DVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 999984321100001 12467899999999999999864
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=4.3e-08 Score=96.82 Aligned_cols=114 Identities=13% Similarity=0.092 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcC----------------------------------------CCCeEEEEEeCCHHH
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCK----------------------------------------NDNVFVYGCDFSENA 145 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~----------------------------------------~~~~~v~gvD~s~~~ 145 (352)
.++..|||.+||+|.+++.++.... .+...++|+|+++.|
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 3577899999999999988776421 022579999999999
Q ss_pred HHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEEehhhh--hccChhHHHHHHHH---HHHhcCCCEEEEEE
Q psy11741 146 VNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL--DAINPNKMQHVINQ---VYKYLKPGGMVLFR 218 (352)
Q Consensus 146 l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l--~~~~~~~~~~~l~~---~~~~LkpgG~l~~~ 218 (352)
++.|+.|+...+ ..+.+.++|+.+. ..+...++||+|+++=-. ..-+..+...+.+. +.+.+.|||.+++.
T Consensus 269 v~~A~~N~~~agv~~~i~~~~~D~~~~--~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~il 346 (703)
T 3v97_A 269 IQRARTNARLAGIGELITFEVKDVAQL--TNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLF 346 (703)
T ss_dssp HHHHHHHHHHTTCGGGEEEEECCGGGC--CCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHHcCCCCceEEEECChhhC--ccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 999999987655 3489999999853 223334489999996221 11122344444444 44555689999887
Q ss_pred eCC
Q psy11741 219 DYG 221 (352)
Q Consensus 219 ~~~ 221 (352)
+..
T Consensus 347 t~~ 349 (703)
T 3v97_A 347 SAS 349 (703)
T ss_dssp ESC
T ss_pred eCC
Confidence 654
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=4.9e-08 Score=94.16 Aligned_cols=104 Identities=14% Similarity=0.231 Sum_probs=71.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC--CCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN--DNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
...|||+|||+|.+....+++... ...+|++||.|+ |...|++.... .+.+|+++.+|+++. .+ ++++|+
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev--~L---PEKVDI 431 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREW--VA---PEKADI 431 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTC--CC---SSCEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceec--cC---CcccCE
Confidence 567999999999985444443311 334789999998 55566655443 347899999999863 23 368999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
|++=.+-..+-.+....+|....+.|||||+++=
T Consensus 432 IVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiP 465 (637)
T 4gqb_A 432 IVSELLGSFADNELSPECLDGAQHFLKDDGVSIP 465 (637)
T ss_dssp EECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEES
T ss_pred EEEEcCcccccccCCHHHHHHHHHhcCCCcEEcc
Confidence 9994332222223344678888899999999873
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-07 Score=89.04 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCC-CCeEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKN-DNVFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
++.+|||.+||+|.++..+++.+.. ....++|+|+++.++..|+.+....+ .++.+.++|.....|+ .....+||
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p-~~~~~~fD 299 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWP-TQEPTNFD 299 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSC-CSSCCCBS
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccc-cccccccc
Confidence 4789999999999999998887531 35689999999999999998865433 3578899998754221 13467899
Q ss_pred EEEehhhh--hc-----------------cCh--hHHHHHHHHHHHhcC-CCEEEEEEeCC
Q psy11741 183 IVLLIFVL--DA-----------------INP--NKMQHVINQVYKYLK-PGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~l--~~-----------------~~~--~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 221 (352)
+|+++=-+ .. +++ ..-..++..+.+.|+ |||++.+..++
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 99984111 00 100 011258899999999 99998887543
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-08 Score=87.47 Aligned_cols=127 Identities=15% Similarity=0.186 Sum_probs=83.2
Q ss_pred CCeEEEEcCCccccHHHHHhhc------CCC-----CeEEEEEeCCH---HHHH-----------HHHhcccc-------
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHC------KND-----NVFVYGCDFSE---NAVN-----------ILKEHEEY------- 155 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~------~~~-----~~~v~gvD~s~---~~l~-----------~a~~~~~~------- 155 (352)
+.+|||+|||+|..+..+++.. . | ..+++++|..+ .++. .|++....
T Consensus 61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~-p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 61 LFVVAESGFGTGLNFLTLWQAFDQFREAH-PQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp EEEEEESCCTTSHHHHHHHHHHHHHHHHC-TTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCEEEEECCChHHHHHHHHHHHHhhhhhC-CCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 5699999999999888876643 2 3 36899999876 5554 33433221
Q ss_pred --------CCCceEEEEecCCCCCCCCCCCC----CcceEEEehhhhhccChh-HHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 156 --------KPDRCHAFVCDVTSEDWNPPFAP----ESLDIVLLIFVLDAINPN-KMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 156 --------~~~~v~~~~~d~~~~~~~~~~~~----~~fD~V~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
...++++..+|+.+. ++..+ ..||+|+....--.-.++ -...+++.++++|+|||+|+. ++.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~---l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t--ysa 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINEL---ISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT--FTS 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHH---GGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE--SCC
T ss_pred hhheeccCCceEEEEEECcHHHH---HhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE--EeC
Confidence 124677889998752 22112 379999984321111122 135789999999999999885 221
Q ss_pred CchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 223 YDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
...++..+.++||.+...
T Consensus 215 -------------------------------a~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 215 -------------------------------AGFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp -------------------------------BHHHHHHHHHHTEEEEEE
T ss_pred -------------------------------CHHHHHHHHHCCCEEEeC
Confidence 124677888899997654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.1e-09 Score=95.63 Aligned_cols=72 Identities=7% Similarity=0.117 Sum_probs=59.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--C-CceEEEEecCCCCCCCCCC-CCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--P-DRCHAFVCDVTSEDWNPPF-APESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~-~~v~~~~~d~~~~~~~~~~-~~~~fD~ 183 (352)
+.+|||+|||+|..+..+++ .+.+|+|+|+|+.|++.|++++... + .+++++++|+.+. ++. .+++||+
T Consensus 94 g~~VLDLgcG~G~~al~LA~----~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~---L~~~~~~~fDv 166 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMS----KASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEY---LPLIKTFHPDY 166 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHT----TCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGS---HHHHHHHCCSE
T ss_pred CCEEEEeCCCchHHHHHHHh----cCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHh---hhhccCCCceE
Confidence 78999999999999999988 5679999999999999999998753 3 5799999998752 121 2358999
Q ss_pred EEe
Q psy11741 184 VLL 186 (352)
Q Consensus 184 V~~ 186 (352)
|++
T Consensus 167 V~l 169 (410)
T 3ll7_A 167 IYV 169 (410)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.6e-08 Score=93.11 Aligned_cols=109 Identities=12% Similarity=0.072 Sum_probs=75.0
Q ss_pred CeEEEEcCCccccHHHHHhhcCC-------------CCeEEEEEeCCHHHHHHHHhccccCCC--ceEEEEecCCCCCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKN-------------DNVFVYGCDFSENAVNILKEHEEYKPD--RCHAFVCDVTSEDWN 173 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~-------------~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~ 173 (352)
.+|||.|||+|.++..+++.+.. ....++|+|+++.++..|+.+....+. ++.+.++|....
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~--- 322 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLD--- 322 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTS---
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcC---
Confidence 49999999999998887654310 146899999999999999988654332 233366776532
Q ss_pred CCCCCCcceEEEehhhhhc-------------------------cCh--hHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 174 PPFAPESLDIVLLIFVLDA-------------------------INP--NKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 174 ~~~~~~~fD~V~~~~~l~~-------------------------~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
..+...+||+|+++=-+.. +++ .....++..+.+.|+|||++.+..+
T Consensus 323 ~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP 396 (544)
T 3khk_A 323 DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLA 396 (544)
T ss_dssp CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEec
Confidence 2234578999999422111 100 1112688999999999999888754
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-07 Score=77.89 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=72.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----CceEEEEecCCCCC-----------C
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----DRCHAFVCDVTSED-----------W 172 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~-----------~ 172 (352)
..+|||+||| .-+..+++. ++.+|+.+|.++...+.|+++++..+ .+++++.+|+.+.. .
T Consensus 31 a~~VLEiGtG--ySTl~lA~~---~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 31 AEVILEYGSG--GSTVVAAEL---PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp CSEEEEESCS--HHHHHHHTS---TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred CCEEEEECch--HHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 6799999995 566666663 46799999999999999999887643 47999999975420 0
Q ss_pred CCC--------C-CCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 173 NPP--------F-APESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 173 ~~~--------~-~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.++ . ..++||+|+.-.- .....+..+.+.|+|||++++..
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCCCeEEEEeC
Confidence 011 1 1378999998542 12355566779999999998864
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-08 Score=96.47 Aligned_cols=106 Identities=23% Similarity=0.175 Sum_probs=72.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcC--C---------CCeEEEEEeCCHHHHHHHHhccc-cCCCceEEEEecCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK--N---------DNVFVYGCDFSENAVNILKEHEE-YKPDRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~--~---------~~~~v~gvD~s~~~l~~a~~~~~-~~~~~v~~~~~d~~~~~~~~~ 175 (352)
+..|||||||+|.++...+.+.. . ...+|++||.|+.++..++.+.. .....|+++.+|+++. .
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev----~ 485 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSL----P 485 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGH----H
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhc----c
Confidence 46899999999999654333221 0 23489999999977765554433 2446799999999853 2
Q ss_pred CC-----CCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 176 FA-----PESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 176 ~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
.+ .+++|+|++-..-.+...+-...+|..+.+.|||||+++=
T Consensus 486 lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP 532 (745)
T 3ua3_A 486 GIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIP 532 (745)
T ss_dssp HHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred cccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEEC
Confidence 21 4789999995442222224455677778899999998773
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-07 Score=85.43 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=83.5
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-------CCceEEEEecCCCCCCCCCC
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-------PDRCHAFVCDVTSEDWNPPF 176 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~v~~~~~d~~~~~~~~~~ 176 (352)
.+.++.+|||+++|.|.-+..++... .+..|+++|+|+.-+...++++... +.++.+...|..... ..
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~--~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~---~~ 219 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTG--CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWG---EL 219 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTT--CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHH---HH
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhc--CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcc---hh
Confidence 45568999999999999999998865 5568999999999888888776532 246788888876421 12
Q ss_pred CCCcceEEEeh----h---hhhc--------cCh-------hHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 177 APESLDIVLLI----F---VLDA--------INP-------NKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 177 ~~~~fD~V~~~----~---~l~~--------~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
..+.||.|++- . .... ..+ .-+..+|..+.++|||||+|+-++.+..
T Consensus 220 ~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 220 EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 35789999972 1 1100 011 1245788999999999999998887643
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3e-08 Score=85.62 Aligned_cols=93 Identities=9% Similarity=0.123 Sum_probs=60.6
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc-------cCC---CceEEEEecCCCCCCCCCCCC
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-------YKP---DRCHAFVCDVTSEDWNPPFAP 178 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-------~~~---~~v~~~~~d~~~~~~~~~~~~ 178 (352)
.+|||+|||+|..+..++.. +.+|+++|.++.+.+.++++.+ ..+ .+++++++|+.+. ++...
T Consensus 90 ~~VLDl~~G~G~dal~lA~~----g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~---L~~~~ 162 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV----GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA---LTDIT 162 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH----TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH---STTCS
T ss_pred CEEEEcCCcCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH---HHhCc
Confidence 79999999999999999984 5589999999987555544432 111 4689999998752 22112
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCC
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKP 211 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp 211 (352)
.+||+|++.-.+.+-. . ...+++..++|++
T Consensus 163 ~~fDvV~lDP~y~~~~-~--saavkk~~~~lr~ 192 (258)
T 2oyr_A 163 PRPQVVYLDPMFPHKQ-K--SALVKKEMRVFQS 192 (258)
T ss_dssp SCCSEEEECCCCCCCC-C-------HHHHHHHH
T ss_pred ccCCEEEEcCCCCCcc-c--chHHHHHHHHHHH
Confidence 4799999865554321 1 1344444455544
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.3e-08 Score=83.07 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||||||+|.++..+++.. +...|+|+|++..+...+... ...+.++.....++. ...++.+++|+|+|
T Consensus 90 ~~~~VLDLGaAPGGWsQvAa~~~--gv~sV~GvdvG~d~~~~pi~~-~~~g~~ii~~~~~~d----v~~l~~~~~DvVLS 162 (282)
T 3gcz_A 90 PTGIVVDLGCGRGGWSYYAASLK--NVKKVMAFTLGVQGHEKPIMR-TTLGWNLIRFKDKTD----VFNMEVIPGDTLLC 162 (282)
T ss_dssp CCEEEEEETCTTCHHHHHHHTST--TEEEEEEECCCCTTSCCCCCC-CBTTGGGEEEECSCC----GGGSCCCCCSEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--CCCeeeeEEeccCcccccccc-ccCCCceEEeeCCcc----hhhcCCCCcCEEEe
Confidence 47799999999999999888653 455789999987642222110 011223444443322 11234688999999
Q ss_pred hhhhh----ccChhHHHHHHHHHHHhcCCC--EEEEEEeCC
Q psy11741 187 IFVLD----AINPNKMQHVINQVYKYLKPG--GMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~----~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~~ 221 (352)
..... .++......+|.-+.++|+|| |.|++-.+.
T Consensus 163 DmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 163 DIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred cCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 66544 121112223577778999999 999998765
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.4e-07 Score=88.23 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCC-CCeEEEEEeCCHHHHHHH--Hhcccc----CC-CceEEEEecCCCCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKN-DNVFVYGCDFSENAVNIL--KEHEEY----KP-DRCHAFVCDVTSEDWNPPFAP 178 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~-~~~~v~gvD~s~~~l~~a--~~~~~~----~~-~~v~~~~~d~~~~~~~~~~~~ 178 (352)
++.+|||.|||+|.++..++..... ...+++|+|+++.+++.| +.+... .+ ....+...|+... .....
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~---~~~~~ 397 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL---NPEDF 397 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGC---CGGGG
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcc---ccccc
Confidence 3779999999999999999886521 235799999999999999 544322 11 1224445555431 12235
Q ss_pred CcceEEEehhhhh--ccCh-------------------------hHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 179 ESLDIVLLIFVLD--AINP-------------------------NKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 179 ~~fD~V~~~~~l~--~~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++||+|+++=-.. .-.. +-...+++.+.++|+|||++.+..+.
T Consensus 398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 6899999942210 0000 11345788899999999999987654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.40 E-value=3e-07 Score=70.73 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=61.7
Q ss_pred CCeEEEEcCCcc-ccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVG-NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G-~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||||||+| ..+..|++. .+..|+++|+++.+++ +++.|+.++.. . .-..||+|++
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~---~g~~V~atDInp~Av~--------------~v~dDiF~P~~--~-~Y~~~DLIYs 95 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKH---SKVDLVLTDIKPSHGG--------------IVRDDITSPRM--E-IYRGAALIYS 95 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHH---SCCEEEEECSSCSSTT--------------EECCCSSSCCH--H-HHTTEEEEEE
T ss_pred CCcEEEEccCCChHHHHHHHHh---CCCeEEEEECCccccc--------------eEEccCCCCcc--c-ccCCcCEEEE
Confidence 579999999999 599999865 6779999999986443 78888875321 0 0147999977
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.. ++.++...+.++++.+ |.-+++...
T Consensus 96 ir-----PP~El~~~i~~lA~~v--~adliI~pL 122 (153)
T 2k4m_A 96 IR-----PPAEIHSSLMRVADAV--GARLIIKPL 122 (153)
T ss_dssp ES-----CCTTTHHHHHHHHHHH--TCEEEEECB
T ss_pred cC-----CCHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 43 4566677777776644 455777644
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.6e-07 Score=79.02 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=79.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC---CCeEEEEEeCCHH--------------------------HHHHHHhccccCC-
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN---DNVFVYGCDFSEN--------------------------AVNILKEHEEYKP- 157 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~---~~~~v~gvD~s~~--------------------------~l~~a~~~~~~~~- 157 (352)
++.|||+||..|..+..++..+.. ++.+|+++|..+. .++.++++++..+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 679999999999999888776521 3668999996421 4666777776543
Q ss_pred --CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 158 --DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 158 --~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.+++++.+|+.+.... .++++||+|+.-.-. . +.....|+.+...|+|||++++.++
T Consensus 187 ~~~~I~li~Gda~etL~~--~~~~~~d~vfIDaD~--y--~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPT--APIDTLAVLRMDGDL--Y--ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CSTTEEEEESCHHHHSTT--CCCCCEEEEEECCCS--H--HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CcCceEEEEeCHHHHHhh--CCCCCEEEEEEcCCc--c--ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 6799999998753211 335789999986532 1 3456789999999999999999765
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.8e-06 Score=73.79 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=63.0
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.++.+|||+||++|.++..+++ .+..|+|||+.+ |-.... ..++|++.++|+... ..+.+.||+|+
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~----rg~~V~aVD~~~-l~~~l~-----~~~~V~~~~~d~~~~----~~~~~~~D~vv 275 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVK----RNMWVYSVDNGP-MAQSLM-----DTGQVTWLREDGFKF----RPTRSNISWMV 275 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHH----TTCEEEEECSSC-CCHHHH-----TTTCEEEECSCTTTC----CCCSSCEEEEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHH----CCCEEEEEEhhh-cChhhc-----cCCCeEEEeCccccc----cCCCCCcCEEE
Confidence 3589999999999999999998 677999999875 222222 136799999998742 23357899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
|-.+. ++.....++......+..++.++.
T Consensus 276 sDm~~---~p~~~~~l~~~wl~~~~~~~aI~~ 304 (375)
T 4auk_A 276 CDMVE---KPAKVAALMAQWLVNGWCRETIFN 304 (375)
T ss_dssp ECCSS---CHHHHHHHHHHHHHTTSCSEEEEE
T ss_pred EcCCC---ChHHhHHHHHHHHhccccceEEEE
Confidence 96543 223333344443333334454443
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-06 Score=75.71 Aligned_cols=108 Identities=12% Similarity=0.110 Sum_probs=67.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+||||||++|.++..+++.. +...|+|+|++..+...... ....+.++.....++. ...+..+.+|+|+|
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~--gv~sV~Gvdlg~~~~~~P~~-~~~~~~~iv~~~~~~d----i~~l~~~~~DlVls 153 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQK--EVMSVKGYTLGIEGHEKPIH-MQTLGWNIVKFKDKSN----VFTMPTEPSDTLLC 153 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTST--TEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCC----TTTSCCCCCSEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHhc--CCceeeeEEecccccccccc-ccccCCceEEeecCce----eeecCCCCcCEEee
Confidence 48899999999999999999753 44578999997643111100 0001123333332221 11234678999999
Q ss_pred hhhhh----ccChhHHHHHHHHHHHhcCCC-EEEEEEeCC
Q psy11741 187 IFVLD----AINPNKMQHVINQVYKYLKPG-GMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~----~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 221 (352)
..... .++......+|.-+.++|+|| |.|++-.+.
T Consensus 154 D~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 154 DIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 65443 111111234577778999999 999998776
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=5.2e-07 Score=81.37 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc---------CCCceEEEEecCCCCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY---------KPDRCHAFVCDVTSEDWNPPFA 177 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~v~~~~~d~~~~~~~~~~~ 177 (352)
++++||=||.|.|..++.+++. +..+|+.||+++.+++.|++.+.. ..++++++.+|.........-.
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh---~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~ 281 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL---KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE 281 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT---CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhc---CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence 3689999999999999999885 446899999999999999987532 1145788888876421000112
Q ss_pred CCcceEEEehhhhhcc-------C-hhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 178 PESLDIVLLIFVLDAI-------N-PNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 178 ~~~fD~V~~~~~l~~~-------~-~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.++||+|+.-..-... . .--...+++.++++|+|||+++...
T Consensus 282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 4679999985321110 0 1123567899999999999998853
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.9e-06 Score=74.05 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=57.8
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCC-C-CCcceE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF-A-PESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~-~-~~~fD~ 183 (352)
.++..++|+.||.|..+..+++.+. +..+|+|+|.++.+++.|+ ++ ...++.+++++..+....++. . .+++|.
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~lg-~~GrVig~D~Dp~Al~~A~-rL--~~~Rv~lv~~nF~~l~~~L~~~g~~~~vDg 131 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQLG-EEGRLLAIDRDPQAIAVAK-TI--DDPRFSIIHGPFSALGEYVAERDLIGKIDG 131 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTCC-TTCEEEEEESCHHHHHHHT-TC--CCTTEEEEESCGGGHHHHHHHTTCTTCEEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHH-hh--cCCcEEEEeCCHHHHHHHHHhcCCCCcccE
Confidence 3488999999999999999999765 5679999999999999995 44 246789999887653111110 0 136888
Q ss_pred EEe
Q psy11741 184 VLL 186 (352)
Q Consensus 184 V~~ 186 (352)
|+.
T Consensus 132 ILf 134 (347)
T 3tka_A 132 ILL 134 (347)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.9e-06 Score=73.22 Aligned_cols=75 Identities=16% Similarity=0.060 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~V~ 185 (352)
++..+||++||.|..+..+++. +.+|+|+|.++.+++.|++ +.. .++.++++++.+....+. ...+++|.|+
T Consensus 22 ~gg~~VD~T~G~GGHS~~il~~----~g~VigiD~Dp~Ai~~A~~-L~~--~rv~lv~~~f~~l~~~L~~~g~~~vDgIL 94 (285)
T 1wg8_A 22 PGGVYVDATLGGAGHARGILER----GGRVIGLDQDPEAVARAKG-LHL--PGLTVVQGNFRHLKRHLAALGVERVDGIL 94 (285)
T ss_dssp TTCEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHH-TCC--TTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHC----CCEEEEEeCCHHHHHHHHh-hcc--CCEEEEECCcchHHHHHHHcCCCCcCEEE
Confidence 4789999999999999999994 5699999999999999998 654 589999999875311111 1225799998
Q ss_pred ehh
Q psy11741 186 LIF 188 (352)
Q Consensus 186 ~~~ 188 (352)
+..
T Consensus 95 ~DL 97 (285)
T 1wg8_A 95 ADL 97 (285)
T ss_dssp EEC
T ss_pred eCC
Confidence 743
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.4e-05 Score=74.67 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCC-----------CeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKND-----------NVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNP 174 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~-----------~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~ 174 (352)
++.+|+|.+||+|.++....+.+... ...++|+|+++.+...|+-+.--.+ ....+..+|........
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~ 296 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE 296 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh
Confidence 37799999999999988776654211 2469999999999999987654322 23355666655321111
Q ss_pred CCCCCcceEEEehhhhh---------cc-----ChhHHHHHHHHHHHhcC-------CCEEEEEEeC
Q psy11741 175 PFAPESLDIVLLIFVLD---------AI-----NPNKMQHVINQVYKYLK-------PGGMVLFRDY 220 (352)
Q Consensus 175 ~~~~~~fD~V~~~~~l~---------~~-----~~~~~~~~l~~~~~~Lk-------pgG~l~~~~~ 220 (352)
.....+||+|+++=-+. .+ ..+....++..+.+.|| |||++.+..+
T Consensus 297 ~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 297 MGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp CCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred hcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 12245799999942221 01 11223356777888886 7999888654
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.1e-05 Score=68.04 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=60.3
Q ss_pred CCCCeEEEEcCCccccHHHHHhh--cCCCCeEEEEEeCCHHHHHHHHhccccCCCce---EEEEe-cCCCCCCCCCCCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEH--CKNDNVFVYGCDFSENAVNILKEHEEYKPDRC---HAFVC-DVTSEDWNPPFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~--~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v---~~~~~-d~~~~~~~~~~~~~ 179 (352)
.++.+|||+||+.|.++...++. ...-...++|+|+ + + .-.......+ .+.++ |+.+ ....
T Consensus 72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~-----~P~~~~~~Gv~~i~~~~G~Df~~------~~~~ 138 (269)
T 2px2_A 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-E-----EPMLMQSYGWNIVTMKSGVDVFY------KPSE 138 (269)
T ss_dssp CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-C-----CCCCCCSTTGGGEEEECSCCGGG------SCCC
T ss_pred CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-c-----CCCcccCCCceEEEeeccCCccC------CCCC
Confidence 34889999999999999999885 2100123455552 1 0 0010000223 44446 9874 2245
Q ss_pred cceEEEehhhhh----ccChhHHHHHHHHHHHhcCCCE-EEEEEeCC
Q psy11741 180 SLDIVLLIFVLD----AINPNKMQHVINQVYKYLKPGG-MVLFRDYG 221 (352)
Q Consensus 180 ~fD~V~~~~~l~----~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~ 221 (352)
.+|+|+|-..-. .++......+|.-+.++|+||| .|++-.+.
T Consensus 139 ~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 139 ISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 799999944221 1110111126777779999999 99987665
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2e-05 Score=65.50 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEe-cCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVC-DVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~-d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+||++|.++...+... ....|+|+|+...-.+.-+ .....+ ..++|..+ |+.. ++ ...+|.|
T Consensus 78 ~g~~VvDLGaapGGWSq~~a~~~--g~~~V~avdvG~~ghe~P~-~~~s~gwn~v~fk~gvDv~~----~~--~~~~Dtl 148 (267)
T 3p8z_A 78 PEGRVIDLGCGRGGWSYYCAGLK--KVTEVRGYTKGGPGHEEPV-PMSTYGWNIVKLMSGKDVFY----LP--PEKCDTL 148 (267)
T ss_dssp CCEEEEEESCTTSHHHHHHHTST--TEEEEEEECCCSTTSCCCC-CCCCTTTTSEEEECSCCGGG----CC--CCCCSEE
T ss_pred CCCEEEEcCCCCCcHHHHHHHhc--CCCEEEEEecCCCCccCcc-hhhhcCcCceEEEeccceee----cC--CccccEE
Confidence 47799999999999999888764 4457999999764221000 001111 56889988 8752 22 3679999
Q ss_pred EehhhhhccChh-H---HHHHHHHHHHhcCCCEEEEEEeCCCCc
Q psy11741 185 LLIFVLDAINPN-K---MQHVINQVYKYLKPGGMVLFRDYGRYD 224 (352)
Q Consensus 185 ~~~~~l~~~~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~ 224 (352)
+|.-.=..-++. + -.++|+-+.+.|++ |-+++-.+.+..
T Consensus 149 lcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 149 LCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp EECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred EEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 995432111111 2 23467777899998 788887766543
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.88 E-value=3.8e-05 Score=68.84 Aligned_cols=149 Identities=18% Similarity=0.238 Sum_probs=100.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC----------------------CCceEEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK----------------------PDRCHAFVC 165 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~----------------------~~~v~~~~~ 165 (352)
...|+.+|||.......+.... ++..++-+|. |..++.-++.+... ..+..++.+
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~--~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMF--PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHC--TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CcEEEEeCCCCccHHHHhcCcC--CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 5789999999999998887754 5778899998 77777666654432 257889999
Q ss_pred cCCCCCC------CCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC----chhhHhhhcCcc
Q psy11741 166 DVTSEDW------NPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY----DLVQLRFKKGRC 235 (352)
Q Consensus 166 d~~~~~~------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~~~~~~~ 235 (352)
|+.+..| ..+ ......++++-.++.+++++....+++.+.+.. |+|.+++.+...+ +.....+.
T Consensus 175 DL~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~---- 248 (334)
T 1rjd_A 175 DLNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQ---- 248 (334)
T ss_dssp CTTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHH----
T ss_pred CCCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHH----
Confidence 9987432 122 335678999999999999999999999999987 6777654443322 10000000
Q ss_pred ccCceee-cCC--CeeeeccCHHHHHHHHHhCCCc
Q psy11741 236 LQDNFYA-RGD--GTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 236 ~~~~~~~-~~~--~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.++-. .+. .....+.++++..+.|.++||.
T Consensus 249 --~~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 249 --SNLKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp --HHHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred --HHhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 00000 000 1111356889999999999997
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.81 E-value=1.8e-05 Score=70.00 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=40.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY 155 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 155 (352)
++..|||++||+|.++..++. .+.+++|+|+++.+++.|++++..
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~----~g~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAAR----WGRRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHH----cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 478999999999999998887 667999999999999999998765
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.77 E-value=9.4e-05 Score=63.57 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=67.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEe-cCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVC-DVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~-d~~~~~~~~~~~~~~fD~V 184 (352)
++.+||||||++|.++...+... ....|+|+|+...--+.-+ .....+ ..+.+... |+.. ++ ...+|+|
T Consensus 94 ~~~~VlDLGaapGGwsq~~~~~~--gv~~V~avdvG~~~he~P~-~~~ql~w~lV~~~~~~Dv~~----l~--~~~~D~i 164 (321)
T 3lkz_A 94 PVGKVIDLGCGRGGWCYYMATQK--RVQEVRGYTKGGPGHEEPQ-LVQSYGWNIVTMKSGVDVFY----RP--SECCDTL 164 (321)
T ss_dssp CCEEEEEETCTTCHHHHHHTTCT--TEEEEEEECCCSTTSCCCC-CCCBTTGGGEEEECSCCTTS----SC--CCCCSEE
T ss_pred CCCEEEEeCCCCCcHHHHHHhhc--CCCEEEEEEcCCCCccCcc-hhhhcCCcceEEEeccCHhh----CC--CCCCCEE
Confidence 47799999999999999877763 3447999999764110000 000111 23677776 7753 22 3669999
Q ss_pred EehhhhhccC-h----hHHHHHHHHHHHhcCCC-EEEEEEeCCCC
Q psy11741 185 LLIFVLDAIN-P----NKMQHVINQVYKYLKPG-GMVLFRDYGRY 223 (352)
Q Consensus 185 ~~~~~l~~~~-~----~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~ 223 (352)
+|.-. ..-+ + ..-.++|+-+.+.|++| |-+++-.+.+.
T Consensus 165 vcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY 208 (321)
T 3lkz_A 165 LCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY 208 (321)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred EEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence 98544 2221 1 11234677778999998 89998877763
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.001 Score=58.28 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=76.0
Q ss_pred CCeEEEEcCCccccHHHHHhhc--CCCC--eEEEEEeCCH------------HHHHHHHhcc---ccCCCceEEEEecCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHC--KNDN--VFVYGCDFSE------------NAVNILKEHE---EYKPDRCHAFVCDVT 168 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~--~~~~--~~v~gvD~s~------------~~l~~a~~~~---~~~~~~v~~~~~d~~ 168 (352)
.-+|||+|-|+|.......... ..+. .+++.+|..+ ...+...... ......+.+..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 4589999999998654332211 0133 4567776421 1111111111 111234567788886
Q ss_pred CCCCCCC-CCCCcceEEEehhhhhccChhHH-HHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCC
Q psy11741 169 SEDWNPP-FAPESLDIVLLIFVLDAINPNKM-QHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDG 246 (352)
Q Consensus 169 ~~~~~~~-~~~~~fD~V~~~~~l~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
+. ++ +.+.+||+|+.-..--.-+|+.+ ..+++.++++++|||+|.- ++
T Consensus 177 ~~---l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt------------------------- 226 (308)
T 3vyw_A 177 KR---IKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS------------------------- 226 (308)
T ss_dssp HH---GGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC-------------------------
T ss_pred HH---HhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee-------------------------
Confidence 52 22 23457999998543222233322 4789999999999998764 22
Q ss_pred eeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 247 TLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 247 ~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
....++.-|+++||.+...
T Consensus 227 ------aag~VRR~L~~aGF~V~k~ 245 (308)
T 3vyw_A 227 ------SSLSVRKSLLTLGFKVGSS 245 (308)
T ss_dssp ------CCHHHHHHHHHTTCEEEEE
T ss_pred ------CcHHHHHHHHHCCCEEEec
Confidence 2345888999999998765
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00038 Score=59.75 Aligned_cols=98 Identities=8% Similarity=0.159 Sum_probs=62.1
Q ss_pred CCCCCeEEEEcC------CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCC
Q psy11741 105 TCSTKNILEIGC------GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAP 178 (352)
Q Consensus 105 ~~~~~~vLD~Gc------G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 178 (352)
-..+.+|||+|+ .+|.. .+.+.. ..+..|+++|+.+-. . ... .++++|.... ...
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~-p~g~~VVavDL~~~~---------s-da~-~~IqGD~~~~-----~~~ 167 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWL-PTGTLLVDSDLNDFV---------S-DAD-STLIGDCATV-----HTA 167 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHS-CTTCEEEEEESSCCB---------C-SSS-EEEESCGGGE-----EES
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhC-CCCcEEEEeeCcccc---------c-CCC-eEEEcccccc-----ccC
Confidence 334899999995 66663 233332 134699999997731 1 122 4589997532 124
Q ss_pred CcceEEEehhh---hhccCh------hHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 179 ESLDIVLLIFV---LDAINP------NKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 179 ~~fD~V~~~~~---l~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++||+|+|-.. ..+.+. .-...++.-+.++|+|||.|++-.+.
T Consensus 168 ~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQ 219 (344)
T 3r24_A 168 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 219 (344)
T ss_dssp SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEec
Confidence 78999999331 112211 13456677788899999999997553
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=5.1e-05 Score=84.66 Aligned_cols=150 Identities=13% Similarity=0.136 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCC-C--CeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKN-D--NVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~-~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+..+|||||.|+|..+..+.+.+.. + ..+++..|+|+...+.|+++++.. ++.....|..+ ..++...+||+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~--di~~~~~d~~~---~~~~~~~~ydl 1314 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL--HVTQGQWDPAN---PAPGSLGKADL 1314 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH--TEEEECCCSSC---CCC-----CCE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc--ccccccccccc---cccCCCCceeE
Confidence 4679999999999988777665531 1 247889999998888887776431 22222223321 11223567999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
|++.+++|.. .+....+.+++++|||||.+++.+..... ..+... .++...........+.++|..++..
T Consensus 1315 via~~vl~~t--~~~~~~l~~~~~lL~p~G~l~~~e~~~~~------~~g~~~--~~~~~~~r~~~~~~~~~~w~~~l~~ 1384 (2512)
T 2vz8_A 1315 LVCNCALATL--GDPAVAVGNMAATLKEGGFLLLHTLLAGH------PLGEMV--GFLTSPEQGGRHLLSQDQWESLFAG 1384 (2512)
T ss_dssp EEEECC----------------------CCEEEEEEC----------------------------------CTTTTSSTT
T ss_pred EEEccccccc--ccHHHHHHHHHHhcCCCcEEEEEeccccc------cccccc--cccccccccCCcccCHHHHHHHHHh
Confidence 9999999866 67788999999999999999987653210 000000 0000000011123566777788888
Q ss_pred CCCceEEe
Q psy11741 264 AGFVEKQN 271 (352)
Q Consensus 264 ~Gf~~~~~ 271 (352)
+||..+..
T Consensus 1385 ~gf~~~~~ 1392 (2512)
T 2vz8_A 1385 ASLHLVAL 1392 (2512)
T ss_dssp TTEEEEEE
T ss_pred CCCceeee
Confidence 99987654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0028 Score=56.03 Aligned_cols=109 Identities=11% Similarity=0.146 Sum_probs=81.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc----CCCceEEEEecCCCCCCC-----CCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY----KPDRCHAFVCDVTSEDWN-----PPFAP 178 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~~-----~~~~~ 178 (352)
...|++||||-=.....+.. ..+..++-+| -|..++..++.+.. ...+..++.+|+.+ .+. ..+..
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~---~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~ 177 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDW---PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDP 177 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCC---CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCT
T ss_pred CCeEEEeCCCCCchhhhccC---CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCC
Confidence 35799999998766555442 1357899999 58888888887753 24567889999986 321 11223
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
..--++++-.+++++++++...+++.+...+.||+.+++...+
T Consensus 178 ~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 178 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred CCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 3456777888999999999999999999999999999997554
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0011 Score=59.55 Aligned_cols=84 Identities=8% Similarity=-0.041 Sum_probs=61.3
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+.+...+.+..+-.... . ...++..|||||.|.|.+|..|++.. ...+|+++|+++.++...++.. . ..
T Consensus 33 nFL~d~~i~~~Iv~~~~l~~~-~--~~~~~~~VlEIGPG~G~LT~~Ll~~~--~~~~vvavE~D~~l~~~L~~~~-~-~~ 105 (353)
T 1i4w_A 33 KYLWNPTVYNKIFDKLDLTKT-Y--KHPEELKVLDLYPGVGIQSAIFYNKY--CPRQYSLLEKRSSLYKFLNAKF-E-GS 105 (353)
T ss_dssp CCBCCHHHHHHHHHHHCGGGT-C--CCTTTCEEEEESCTTCHHHHHHHHHH--CCSEEEEECCCHHHHHHHHHHT-T-TS
T ss_pred CccCCHHHHHHHHHhccCCcc-c--CcCCCCEEEEECCCCCHHHHHHHhhC--CCCEEEEEecCHHHHHHHHHhc-c-CC
Confidence 677777766666555432210 0 00125789999999999999999853 3458999999999999998876 2 36
Q ss_pred ceEEEEecCCC
Q psy11741 159 RCHAFVCDVTS 169 (352)
Q Consensus 159 ~v~~~~~d~~~ 169 (352)
+++++.+|+.+
T Consensus 106 ~l~ii~~D~l~ 116 (353)
T 1i4w_A 106 PLQILKRDPYD 116 (353)
T ss_dssp SCEEECSCTTC
T ss_pred CEEEEECCccc
Confidence 79999999864
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00056 Score=59.08 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY 155 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 155 (352)
++..|||..||+|..+...++ .+.+++|+|+++.+++.|++++..
T Consensus 212 ~~~~vlD~f~GsGtt~~~a~~----~gr~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 212 PNDLVLDCFMGSGTTAIVAKK----LGRNFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp TTCEEEESSCTTCHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHH----cCCeEEEEeCCHHHHHHHHHHHHh
Confidence 478999999999999988877 667999999999999999998754
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00041 Score=59.88 Aligned_cols=104 Identities=11% Similarity=0.069 Sum_probs=75.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+..+||+=+|||.+++.++. ++-+++.+|.++..++..++++.. ..++++...|.......+.-+..+||+|++-
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS----~~d~~vfvE~~~~a~~~L~~Nl~~-~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiD 166 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR----SQDRLYLCELHPTEYNFLLKLPHF-NKKVYVNHTDGVSKLNALLPPPEKRGLIFID 166 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC----TTSEEEEECCSHHHHHHHTTSCCT-TSCEEEECSCHHHHHHHHCSCTTSCEEEEEC
T ss_pred CCCceeEeCCcHHHHHHHcC----CCCeEEEEeCCHHHHHHHHHHhCc-CCcEEEEeCcHHHHHHHhcCCCCCccEEEEC
Confidence 56789999999999999888 556899999999999999999875 4678999999653211111224579999984
Q ss_pred hhhhccChhHHHHHHHHHHH--hcCCCEEEEEE
Q psy11741 188 FVLDAINPNKMQHVINQVYK--YLKPGGMVLFR 218 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~--~LkpgG~l~~~ 218 (352)
=-... ..+...+++.+.+ .+.|+|++++-
T Consensus 167 PPYe~--k~~~~~vl~~L~~~~~r~~~Gi~v~W 197 (283)
T 2oo3_A 167 PSYER--KEEYKEIPYAIKNAYSKFSTGLYCVW 197 (283)
T ss_dssp CCCCS--TTHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCCC--CcHHHHHHHHHHHhCccCCCeEEEEE
Confidence 32221 1466677766665 45789988884
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0071 Score=51.68 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=71.5
Q ss_pred CCeEEEEcCCccccHHHHHhh---cC--CCCeEEEEEe-----CCH----------------------HHHHHH---Hhc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEH---CK--NDNVFVYGCD-----FSE----------------------NAVNIL---KEH 152 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~---~~--~~~~~v~gvD-----~s~----------------------~~l~~a---~~~ 152 (352)
++.|+|+||-.|..+..++.. +. .+..+++|+| +.+ ..++.. .++
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 678999999999988876542 11 1456899998 321 112211 111
Q ss_pred ccc---CCCceEEEEecCCCCCCCCC-----CCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 153 EEY---KPDRCHAFVCDVTSEDWNPP-----FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 153 ~~~---~~~~v~~~~~d~~~~~~~~~-----~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
... ...++.++.+++.+ .++ .+..+||+|+.-.-. . +.....++.+...|+|||++++.+++
T Consensus 150 ~~~~g~~~~~i~li~G~~~d---TL~~~l~~~~~~~~dlv~ID~D~--Y--~~t~~~le~~~p~l~~GGvIv~DD~~ 219 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRE---TVPRYLAENPQTVIALAYFDLDL--Y--EPTKAVLEAIRPYLTKGSIVAFDELD 219 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHH---HHHHHHHHCTTCCEEEEEECCCC--H--HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred hhhcCCCCCcEEEEEecHHH---HHHHHHHhCCCCceEEEEEcCcc--c--chHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 111 23789999999875 222 234579999886532 1 45567888999999999999998875
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.04 Score=50.01 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=53.0
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC-C---CCCCCcceE
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN-P---PFAPESLDI 183 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~---~~~~~~fD~ 183 (352)
.++||+-||.|.++..+..+ |. .+.++|+++.+++..+.+.. +..++++|+.+.... + ......+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~a----G~~~v~avE~d~~a~~t~~~N~~----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~ 74 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA----GFDVKMAVEIDQHAINTHAINFP----RSLHVQEDVSLLNAEIIKGFFKNDMPIDG 74 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH----TCEEEEEECSCHHHHHHHHHHCT----TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred CeEEEEccCcCHHHHHHHHC----CCcEEEEEeCCHHHHHHHHHhCC----CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence 58999999999999988874 44 46799999999999888753 456788888753210 0 012457999
Q ss_pred EEehh
Q psy11741 184 VLLIF 188 (352)
Q Consensus 184 V~~~~ 188 (352)
|+...
T Consensus 75 i~ggp 79 (376)
T 3g7u_A 75 IIGGP 79 (376)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99744
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0059 Score=60.20 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=68.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcC----------CCCeEEEEEeC---CHHHHHHHHhccc--------------------
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK----------NDNVFVYGCDF---SENAVNILKEHEE-------------------- 154 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~----------~~~~~v~gvD~---s~~~l~~a~~~~~-------------------- 154 (352)
.-+|||+|-|+|...+...+... ....++++++. +.+.+..+-....
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 45899999999997777655431 12367999999 7777775443210
Q ss_pred ------cCCCceEEEEecCCCCCCCCCC-CCCcceEEEehhhhhccChhH-HHHHHHHHHHhcCCCEEEEE
Q psy11741 155 ------YKPDRCHAFVCDVTSEDWNPPF-APESLDIVLLIFVLDAINPNK-MQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 155 ------~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~ 217 (352)
.....+++..+|+.+....+.. ....||+|+.-..--..+++. -..+++.++++++|||.+..
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 0012345666776542111111 146799999854332223332 24678999999999998765
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.26 E-value=0.064 Score=47.67 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=50.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.++||+.||.|.++..+.. .|+ .+.++|+++.+++..+.+..... .+|+.+.... . -..+|+|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~----aG~~~v~~~e~d~~a~~t~~~N~~~~~------~~Di~~~~~~-~--~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALES----CGAECVYSNEWDKYAQEVYEMNFGEKP------EGDITQVNEK-T--IPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHH----TTCEEEEEECCCHHHHHHHHHHHSCCC------BSCGGGSCGG-G--SCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHH----CCCeEEEEEeCCHHHHHHHHHHcCCCC------cCCHHHcCHh-h--CCCCCEEEE
Confidence 57899999999999998887 444 47789999999999998864321 5787753211 1 135899998
Q ss_pred hh
Q psy11741 187 IF 188 (352)
Q Consensus 187 ~~ 188 (352)
..
T Consensus 78 gp 79 (327)
T 2c7p_A 78 GF 79 (327)
T ss_dssp EC
T ss_pred CC
Confidence 43
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.053 Score=48.25 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=95.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc------------------------CCCceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY------------------------KPDRCHAF 163 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~------------------------~~~~v~~~ 163 (352)
...|+-+|||.=.....+..... ++..++=||.-+ .++.=++.+.. ...+..++
T Consensus 91 ~~QVV~LGaGlDTr~~RL~~~~~-~~~~~~EVD~P~-vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 91 HCQIVNLGAGMDTTFWRLKDEDL-LSSKYFEVDFPM-IVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp CSEEEEETCTTCCHHHHHHHTTC-CCSEEEEEECHH-HHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCEEEEeCCCcCchHHHhcCCCC-CCCeEEECCcHH-HHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 56899999999877777765211 356888888844 44332222211 13567888
Q ss_pred EecCCCCCCC------CCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCcccc
Q psy11741 164 VCDVTSEDWN------PPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQ 237 (352)
Q Consensus 164 ~~d~~~~~~~------~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 237 (352)
.+|+.+..+. ..+....--++++-.++.+++++....+|+.+.+...+|..++....++.+.....+.
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~~~i~yE~i~p~d~fg~~M~------ 242 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMI------ 242 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEEECCTTSHHHHHHH------
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCceEEEEeccCCCCHHHHHHH------
Confidence 8998753110 1233445667888889999999999999999998876554444433433221110000
Q ss_pred CceeecCC--CeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 238 DNFYARGD--GTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 238 ~~~~~~~~--~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
.++-..+. .....+.++++..+.|.++||..+..
T Consensus 243 ~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~ 278 (334)
T 3iei_A 243 ENLRRRQCDLAGVETCKSLESQKERLLSNGWETASA 278 (334)
T ss_dssp HHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEE
T ss_pred HHHHHhCCCCcccccCCCHHHHHHHHHHcCCCccee
Confidence 00000111 12224578899999999999998654
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.017 Score=51.90 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=53.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|||+.||.|.++..+..... ....+.++|+++.+++..+.+... ..+..+|+.+... ..++...+|+|+..
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~-~~~~v~~~E~d~~a~~~~~~N~~~----~~~~~~Di~~~~~-~~~~~~~~D~l~~g 75 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCI-PAQVVAAIDVNTVANEVYKYNFPH----TQLLAKTIEGITL-EEFDRLSFDMILMS 75 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTC-SEEEEEEECCCHHHHHHHHHHCTT----SCEECSCGGGCCH-HHHHHHCCSEEEEC
T ss_pred CCeEEEeCcCccHHHHHHHHCCC-CceEEEEEeCCHHHHHHHHHhccc----cccccCCHHHccH-hHcCcCCcCEEEEc
Confidence 45899999999999999887420 013589999999999999998742 3567888875320 00111258999985
Q ss_pred hh
Q psy11741 188 FV 189 (352)
Q Consensus 188 ~~ 189 (352)
.-
T Consensus 76 pP 77 (343)
T 1g55_A 76 PP 77 (343)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.012 Score=58.13 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=80.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcC----------CCCeEEEEEeC---CHHHHHHHHhccc--------------------
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK----------NDNVFVYGCDF---SENAVNILKEHEE-------------------- 154 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~----------~~~~~v~gvD~---s~~~l~~a~~~~~-------------------- 154 (352)
.-+|+|+|.|+|...+.+.+... ....+++.++. +...+..|-....
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 56899999999998877766431 01268999998 5555554332210
Q ss_pred ------cCCCceEEEEecCCCCCCCCCC-CCCcceEEEehhhhhccChhH-HHHHHHHHHHhcCCCEEEEEEeCCCCchh
Q psy11741 155 ------YKPDRCHAFVCDVTSEDWNPPF-APESLDIVLLIFVLDAINPNK-MQHVINQVYKYLKPGGMVLFRDYGRYDLV 226 (352)
Q Consensus 155 ------~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 226 (352)
.....+++..+|+.+....+.. ....+|.++.-..--..+++. ...++..+.++++|||.+... +
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~--~----- 211 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF--T----- 211 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES--C-----
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec--c-----
Confidence 0113566777887642211111 146899999854322222222 256889999999999986642 1
Q ss_pred hHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 227 QLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
....++..+.++||.+...
T Consensus 212 --------------------------~~~~vr~~l~~aGf~~~~~ 230 (689)
T 3pvc_A 212 --------------------------AAGFVRRGLQQAGFNVTKV 230 (689)
T ss_dssp --------------------------CCHHHHHHHHHTTCEEEEE
T ss_pred --------------------------CcHHHHHHHHhCCeEEEec
Confidence 1245778888999987664
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.02 Score=43.98 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=61.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|+=+||| .++..+++.+...+..|+++|.++..++.+++. .+.++.+|..+...-....-..+|+|++.
T Consensus 7 ~~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~------g~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 7 CNHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRER------GVRAVLGNAANEEIMQLAHLECAKWLILT 78 (140)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------TCEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred CCCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc------CCCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence 4578888885 466666665544788999999999988877652 35678888765321000112468888764
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
. +.+.....+-...+.+.|+..++...
T Consensus 79 ~-----~~~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 79 I-----PNGYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp C-----SCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred C-----CChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 2 21222223344556677887766643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0054 Score=54.62 Aligned_cols=47 Identities=6% Similarity=-0.075 Sum_probs=40.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP 157 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~ 157 (352)
++..|||.-||+|..+....+ .+.+.+|+|+++.+++.+++++....
T Consensus 252 ~~~~VlDpF~GsGtt~~aa~~----~gr~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 252 PDDLVVDIFGGSNTTGLVAER----ESRKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp TTCEEEETTCTTCHHHHHHHH----TTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred CCCEEEECCCCCCHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 488999999999998887776 66799999999999999999976543
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.05 Score=50.02 Aligned_cols=63 Identities=11% Similarity=0.148 Sum_probs=48.9
Q ss_pred CCCCCeEEEEcCCccccHHHHH-hhcCCCCeEEEEEeCCHHHHHHHHhcccc--C--C-CceEEEEecCC
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIV-EHCKNDNVFVYGCDFSENAVNILKEHEEY--K--P-DRCHAFVCDVT 168 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~-~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~--~-~~v~~~~~d~~ 168 (352)
..++..|+||||+.|..+..++ +... +..+|+++|+++...+..+++... + . .++.++..-+.
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~-~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKG-KFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTS-CCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcC-CCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 3568899999999999999888 3331 336999999999999999998765 1 2 57777766554
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.078 Score=48.49 Aligned_cols=101 Identities=12% Similarity=0.155 Sum_probs=63.4
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC---CC-C-CCCC
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW---NP-P-FAPE 179 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~---~~-~-~~~~ 179 (352)
++.+||-+|||. |..+..+++. .++ +|+++|.|+..++.+++. + ... .|..+... .+ . ....
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~---~Ga~~Vi~~~~~~~~~~~a~~l----G--a~~--i~~~~~~~~~~~~~~~~~g~ 253 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARL---LGAACVIVGDQNPERLKLLSDA----G--FET--IDLRNSAPLRDQIDQILGKP 253 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---HTCSEEEEEESCHHHHHHHHTT----T--CEE--EETTSSSCHHHHHHHHHSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCCEEEEEcCCHHHHHHHHHc----C--CcE--EcCCCcchHHHHHHHHhCCC
Confidence 488999999987 7888888886 455 899999999999888753 1 122 23322110 00 0 0123
Q ss_pred cceEEEehhhhhccC------hhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLDAIN------PNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.+|+|+-...-.... .......+..+.++|++||.+++.
T Consensus 254 g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 254 EVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp CEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 699998644321100 001224678888999999998764
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.15 Score=45.29 Aligned_cols=74 Identities=14% Similarity=0.054 Sum_probs=50.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEE-EEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFV-YGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v-~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+++|+.||.|.++..+....- ..-.+ .++|+++.+.+..+.+.... ...+|+.+... ..++...+|+++.
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~-~~~~v~~a~e~d~~a~~ty~~N~~~~-----~~~~DI~~~~~-~~i~~~~~Dil~g 82 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSI-NINATFIPFDINEIANKIYSKNFKEE-----VQVKNLDSISI-KQIESLNCNTWFM 82 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSC-CCCEEEEEECCCHHHHHHHHHHHCCC-----CBCCCTTTCCH-HHHHHTCCCEEEE
T ss_pred CCEEEEECCChhHHHHHHHHcCC-CceEEEEEEECCHHHHHHHHHHCCCC-----cccCChhhcCH-HHhccCCCCEEEe
Confidence 46899999999999988877320 01245 69999999999998886421 45678875321 0111236899987
Q ss_pred hh
Q psy11741 187 IF 188 (352)
Q Consensus 187 ~~ 188 (352)
..
T Consensus 83 gp 84 (327)
T 3qv2_A 83 SP 84 (327)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.26 Score=43.61 Aligned_cols=130 Identities=12% Similarity=0.100 Sum_probs=78.0
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeE-EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVF-VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
.+|||+-||.|.++..+-+ .|.+ +.++|+++.+.+.-+.+.. -.+..+|+.+... .. -..+|+++..
T Consensus 1 mkvidLFsG~GG~~~G~~~----aG~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~DI~~i~~-~~--~~~~D~l~gg 68 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQK----AGFRIICANEYDKSIWKTYESNHS-----AKLIKGDISKISS-DE--FPKCDGIIGG 68 (331)
T ss_dssp CEEEEESCTTCHHHHHHHH----TTCEEEEEEECCTTTHHHHHHHCC-----SEEEESCGGGCCG-GG--SCCCSEEECC
T ss_pred CeEEEeCcCccHHHHHHHH----CCCEEEEEEeCCHHHHHHHHHHCC-----CCcccCChhhCCH-hh--CCcccEEEec
Confidence 3799999999999988877 4554 5699999999998888753 2567889886421 11 2368999874
Q ss_pred hhhhcc-------Chh----HHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHH
Q psy11741 188 FVLDAI-------NPN----KMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREE 256 (352)
Q Consensus 188 ~~l~~~-------~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (352)
.-...+ ..+ .+..-+-++.+.++|. ++++.. .+. . +. ... .-....
T Consensus 69 pPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk-~~~~EN-V~g-l----------~~-----~~~-----~~~~~~ 125 (331)
T 3ubt_Y 69 PPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAEN-VKG-M----------MA-----QRH-----NKAVQE 125 (331)
T ss_dssp CCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS-EEEEEE-CCG-G----------GG-----CTT-----SHHHHH
T ss_pred CCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCe-EEEeee-ecc-c----------cc-----ccc-----cchhhh
Confidence 322221 111 2222233455567886 344432 211 0 00 000 023566
Q ss_pred HHHHHHhCCCceEEeee
Q psy11741 257 VKTMFESAGFVEKQNLI 273 (352)
Q Consensus 257 ~~~ll~~~Gf~~~~~~~ 273 (352)
+...|++.||.+....+
T Consensus 126 i~~~l~~~GY~v~~~vl 142 (331)
T 3ubt_Y 126 FIQEFDNAGYDVHIILL 142 (331)
T ss_dssp HHHHHHHHTEEEEEEEE
T ss_pred hhhhhccCCcEEEEEec
Confidence 77888999998765543
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.086 Score=47.19 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=61.0
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+||-+|+|. |..+..+++. .|++|+++|.++.-++.+++.- ... .+ .|.. .+ ...+|+|
T Consensus 175 ~~g~~VlV~GaG~vG~~a~qla~~---~Ga~Vi~~~~~~~~~~~~~~lG----a~~-v~-~~~~----~~---~~~~D~v 238 (348)
T 3two_A 175 TKGTKVGVAGFGGLGSMAVKYAVA---MGAEVSVFARNEHKKQDALSMG----VKH-FY-TDPK----QC---KEELDFI 238 (348)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHH---TTCEEEEECSSSTTHHHHHHTT----CSE-EE-SSGG----GC---CSCEEEE
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHhcC----CCe-ec-CCHH----HH---hcCCCEE
Confidence 3488999999875 7777777776 5679999999999888887642 111 12 2221 11 1279999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+-...-. ..+..+.+.|+|||.+++.-
T Consensus 239 id~~g~~--------~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 239 ISTIPTH--------YDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp EECCCSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred EECCCcH--------HHHHHHHHHHhcCCEEEEEC
Confidence 8643211 13566778999999988854
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.03 Score=50.01 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=62.0
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--CCCCCCcce
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--PPFAPESLD 182 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~~fD 182 (352)
.++.+||-.|+|. |..+..+++. .|++|+++|.++..++.+++.-. .. . .|..+.... +....+.+|
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~---~Ga~Vi~~~~~~~~~~~~~~lGa----~~-~--i~~~~~~~~~~~~~~~g~~d 234 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARA---MGLRVAAVDIDDAKLNLARRLGA----EV-A--VNARDTDPAAWLQKEIGGAH 234 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHTTC----SE-E--EETTTSCHHHHHHHHHSSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHcCC----CE-E--EeCCCcCHHHHHHHhCCCCC
Confidence 3488999999875 7777788876 56799999999999998876421 11 1 222211000 000013688
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+.... . ...++.+.+.|+|||.+++.-
T Consensus 235 ~vid~~g----~----~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 235 GVLVTAV----S----PKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp EEEESSC----C----HHHHHHHHHHEEEEEEEEECS
T ss_pred EEEEeCC----C----HHHHHHHHHHhccCCEEEEeC
Confidence 8875422 1 245677888999999988753
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.033 Score=50.48 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=62.5
Q ss_pred CCCCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC-CCCCC
Q psy11741 105 TCSTKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP-PFAPE 179 (352)
Q Consensus 105 ~~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~-~~~~~ 179 (352)
..++.+||-+|||. |..+..+++. .++ +|+++|.++..++.+++.-. . ..+ |..+..+ .+ ....+
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~---~Ga~~Vi~~~~~~~~~~~a~~lGa----~-~vi--~~~~~~~~~~~~~~~~g 257 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKV---CGASIIIAVDIVESRLELAKQLGA----T-HVI--NSKTQDPVAAIKEITDG 257 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHH---HTCSEEEEEESCHHHHHHHHHHTC----S-EEE--ETTTSCHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH---cCCCeEEEECCCHHHHHHHHHcCC----C-EEe--cCCccCHHHHHHHhcCC
Confidence 34588999999986 7788888876 455 79999999999998876421 1 111 2211100 00 01123
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+|+|+-.... ...+..+.+.|+|||.+++.-
T Consensus 258 g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 258 GVNFALESTGS--------PEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp CEEEEEECSCC--------HHHHHHHHHTEEEEEEEEECC
T ss_pred CCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEeC
Confidence 69999854321 245777889999999988753
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=94.08 E-value=0.042 Score=48.70 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=38.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH---HHHHHHHhcccc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE---NAVNILKEHEEY 155 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~---~~l~~a~~~~~~ 155 (352)
++..|||.-||+|..+..... .+.+.+|+|+++ ..++.+++++..
T Consensus 242 ~~~~vlDpF~GsGtt~~aa~~----~~r~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 242 PGSTVLDFFAGSGVTARVAIQ----EGRNSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp TTCEEEETTCTTCHHHHHHHH----HTCEEEEEESSTHHHHHHHHHHHHC--
T ss_pred CCCEEEecCCCCCHHHHHHHH----cCCcEEEEECCccHHHHHHHHHHHHHH
Confidence 488999999999999887777 566899999999 999999998754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.042 Score=49.76 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+||-+|+|. |..+..+++. .|++|+++|.|+.-++.+++.-. . ..+ |..+..+.... .+.+|+|+
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~---~Ga~Vi~~~~~~~~~~~a~~lGa---~--~vi--~~~~~~~~~~~-~~g~Dvvi 262 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHA---MGAHVVAFTTSEAKREAAKALGA---D--EVV--NSRNADEMAAH-LKSFDFIL 262 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHTC---S--EEE--ETTCHHHHHTT-TTCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHcCC---c--EEe--ccccHHHHHHh-hcCCCEEE
Confidence 488999999975 6777777776 56789999999998888876321 1 111 21110000001 14799998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
....-. ..++.+.+.|+|+|.+++.
T Consensus 263 d~~g~~--------~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 263 NTVAAP--------HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp ECCSSC--------CCHHHHHTTEEEEEEEEEC
T ss_pred ECCCCH--------HHHHHHHHHhccCCEEEEe
Confidence 643211 1355677899999998874
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.21 Score=45.52 Aligned_cols=101 Identities=12% Similarity=0.135 Sum_probs=63.6
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCC-C--CC-C-CCCC
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSED-W--NP-P-FAPE 179 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~--~~-~-~~~~ 179 (352)
++.+||-+|||. |..+..+++. .|+ +|+++|.++.-++.+++.- ... .|..+.. + .+ . ....
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~---~Ga~~Vi~~~~~~~~~~~a~~lG------a~~--i~~~~~~~~~~~v~~~t~g~ 253 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARL---LGAAVVIVGDLNPARLAHAKAQG------FEI--ADLSLDTPLHEQIAALLGEP 253 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---TTCSEEEEEESCHHHHHHHHHTT------CEE--EETTSSSCHHHHHHHHHSSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHH---CCCCeEEEEcCCHHHHHHHHHcC------CcE--EccCCcchHHHHHHHHhCCC
Confidence 478999999876 7778888886 455 7999999999999887642 122 2322110 0 00 0 0123
Q ss_pred cceEEEehhhhhc-------cChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLDA-------INPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~~-------~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.+|+|+-...-.. ....+....+..+.++|++||.+++.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 254 EVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp CEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 6999986443210 00012334678888999999998774
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.16 Score=45.17 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=51.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+++|+-||.|.+...+....- ..-.+.++|+++.+.+.-+.|... ..+...|+.+... ..++...+|+++..
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~-~~~~v~a~e~d~~a~~ty~~N~~~----~~~~~~DI~~~~~-~~~~~~~~D~l~gg 76 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGL-DGEIVAAVDINTVANSVYKHNFPE----TNLLNRNIQQLTP-QVIKKWNVDTILMS 76 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTC-SEEEEEEECCCHHHHHHHHHHCTT----SCEECCCGGGCCH-HHHHHTTCCEEEEC
T ss_pred CCEEEEECcCccHHHHHHHHcCC-CceEEEEEeCCHHHHHHHHHhCCC----CceeccccccCCH-HHhccCCCCEEEec
Confidence 34799999999999988877420 113578999999999998888642 3466788875321 01122368999874
Q ss_pred h
Q psy11741 188 F 188 (352)
Q Consensus 188 ~ 188 (352)
.
T Consensus 77 p 77 (333)
T 4h0n_A 77 P 77 (333)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.22 Score=44.70 Aligned_cols=95 Identities=13% Similarity=0.125 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC---CCC--CC-CCCC
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS---EDW--NP-PFAP 178 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~---~~~--~~-~~~~ 178 (352)
++.+||-+|+|. |..+..+++. .|. +|+++|.++.-++.+++.-. . ..+ |... ..+ .+ ....
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~---~Ga~~Vi~~~~~~~~~~~a~~lGa----~-~vi--~~~~~~~~~~~~~i~~~~~ 240 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKA---MGAAQVVVTDLSATRLSKAKEIGA----D-LVL--QISKESPQEIARKVEGQLG 240 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---TTCSEEEEEESCHHHHHHHHHTTC----S-EEE--ECSSCCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCCEEEEECCCHHHHHHHHHhCC----C-EEE--cCcccccchHHHHHHHHhC
Confidence 478999999875 7777778776 566 89999999998888875421 1 111 2110 000 00 0001
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+.+|+|+-... . ...+....++|+|||.+++.-
T Consensus 241 ~g~D~vid~~g-----~---~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 241 CKPEVTIECTG-----A---EASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp SCCSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCEEEECCC-----C---hHHHHHHHHHhcCCCEEEEEe
Confidence 46899885422 1 234677788999999988753
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.84 E-value=0.098 Score=45.77 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=53.9
Q ss_pred ceEEEEecCCCCCCCCCCCCCcceEEEehhhhh----cc----------C----hhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 159 RCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLD----AI----------N----PNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 159 ~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~----~~----------~----~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
++.++++|+.+... .+++++||+|++.=-.. +. . ...+..+++++.++|+|||.+++...
T Consensus 21 ~~~i~~gD~~~~l~--~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 21 VHRLHVGDAREVLA--SFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp CEEEEESCHHHHHT--TSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCEEEECcHHHHHh--hCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 46788888875211 13467899999832110 00 0 02345678899999999999988642
Q ss_pred CCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEee
Q psy11741 221 GRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
.... . ....+.+..+.-...+..+++++||......
T Consensus 99 d~~~------------~----~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~i 134 (297)
T 2zig_A 99 DVAV------------A----RRRFGRHLVFPLHADIQVRCRKLGFDNLNPI 134 (297)
T ss_dssp CEEE------------E----CC----EEEECHHHHHHHHHHHTTCEEEEEE
T ss_pred CCcc------------c----cccCCcccccccHHHHHHHHHHcCCeeeccE
Confidence 2100 0 0000111111123567788899999776643
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.17 Score=38.58 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=59.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|+=+||| .++..+++.+...+.+|+++|.++..++.++.. .+.++.+|..+...-....-..+|+|+..
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~------~~~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE------GFDAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------TCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC------CCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 4578889884 577777776654788999999999988777643 25678888875321001112468888764
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.. .......+....+.+. .+.++...
T Consensus 78 ~~-----~~~~n~~~~~~a~~~~-~~~iia~~ 103 (141)
T 3llv_A 78 GS-----DDEFNLKILKALRSVS-DVYAIVRV 103 (141)
T ss_dssp CS-----CHHHHHHHHHHHHHHC-CCCEEEEE
T ss_pred cC-----CHHHHHHHHHHHHHhC-CceEEEEE
Confidence 32 1222333344444455 55555543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.43 Score=40.59 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=67.1
Q ss_pred CCeEEEEcCCcc-ccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCC-C-----CCC
Q psy11741 108 TKNILEIGCGVG-NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPP-F-----APE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G-~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~-~-----~~~ 179 (352)
++++|=.|++.| .++..+++.+...|++|+.++.++...+.+.+.....+ .++.++.+|+.+...-.. + .-+
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVG 86 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHHS
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 678888887632 34555555543378899999988765555544433322 368999999986321000 0 013
Q ss_pred cceEEEehhhhhc----------cChhHHH-----------HHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDA----------INPNKMQ-----------HVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~----------~~~~~~~-----------~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+|+++.+..+.. .+.+++. .+++.+...++++|.++...
T Consensus 87 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 87 VIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp CCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred CeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 6888887554321 2333333 34566677778888877653
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.21 Score=45.09 Aligned_cols=95 Identities=17% Similarity=0.213 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC-----C-CCCCC
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW-----N-PPFAP 178 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-----~-~~~~~ 178 (352)
++.+||=+|+|. |..+..+++. .|+ +|+++|.++.-++.+++.-.. .. .|.....+ . .....
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~---~Ga~~Vi~~~~~~~~~~~a~~lGa~-----~v--i~~~~~~~~~~i~~~~~~~~ 251 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARL---AGATTVILSTRQATKRRLAEEVGAT-----AT--VDPSAGDVVEAIAGPVGLVP 251 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---TTCSEEEEECSCHHHHHHHHHHTCS-----EE--ECTTSSCHHHHHHSTTSSST
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCCEEEEECCCHHHHHHHHHcCCC-----EE--ECCCCcCHHHHHHhhhhccC
Confidence 478999999865 6677777776 566 899999999999888764211 11 12211100 0 00123
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+.+|+|+-.... ...+..+.++|++||.+++.-
T Consensus 252 gg~Dvvid~~G~--------~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 252 GGVDVVIECAGV--------AETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp TCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCEEEECCCC--------HHHHHHHHHHhccCCEEEEEe
Confidence 479999864211 245777888999999988753
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.43 E-value=0.081 Score=43.04 Aligned_cols=93 Identities=22% Similarity=0.235 Sum_probs=57.8
Q ss_pred CCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC-C-CCCCc
Q psy11741 107 STKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP-P-FAPES 180 (352)
Q Consensus 107 ~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~-~-~~~~~ 180 (352)
++.+||..|+ |.|..+..++.. .|.+|+++|.++..++.+++. +... ..|..+... .. . ...+.
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~---~G~~V~~~~~~~~~~~~~~~~----g~~~---~~d~~~~~~~~~~~~~~~~~~ 107 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKM---IGARIYTTAGSDAKREMLSRL----GVEY---VGDSRSVDFADEILELTDGYG 107 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHTT----CCSE---EEETTCSTHHHHHHHHTTTCC
T ss_pred CCCEEEEeeCCChHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHc----CCCE---EeeCCcHHHHHHHHHHhCCCC
Confidence 3789999995 445555555554 567999999999888777543 1111 124332110 00 0 11246
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|+|+.+.. . ..+..+.+.|+|||.+++.
T Consensus 108 ~D~vi~~~g-----~----~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 108 VDVVLNSLA-----G----EAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp EEEEEECCC-----T----HHHHHHHHTEEEEEEEEEC
T ss_pred CeEEEECCc-----h----HHHHHHHHHhccCCEEEEE
Confidence 999986432 1 3567788999999998874
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=93.34 E-value=0.68 Score=43.27 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeE-EEEEeCCHHHHHHHHhccccCCCceEEEEecCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVF-VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 169 (352)
...+++|+-||.|.++..+.. .|.+ |.++|+++.+.+.-+.+.... +....+.+|+.+
T Consensus 87 ~~~~viDLFaG~GGlslG~~~----aG~~~v~avE~d~~A~~ty~~N~~~~-p~~~~~~~DI~~ 145 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCD-PATHHFNEDIRD 145 (482)
T ss_dssp CSEEEEEESCTTSHHHHHHHT----TTEEEEEEECCCHHHHHHHHHHSCCC-TTTCEEESCTHH
T ss_pred ccceEEEecCCccHHHHHHHH----CCCEEEEEEeCCHHHHHHHHHhcccC-CCcceeccchhh
Confidence 356899999999999988877 5554 789999999998888876322 234566788764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.15 Score=45.71 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC-CCC--CCC--CC---
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS-EDW--NPP--FA--- 177 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~~--~~~--~~--- 177 (352)
++.+||-+|+|. |..+..+++. .+++|+++|.++..++.+++.- .. .. .|..+ ... .+. ..
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~---~Ga~Vi~~~~~~~~~~~~~~lG----a~-~~--~~~~~~~~~~~~i~~~~~~~~ 237 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKA---YGAFVVCTARSPRRLEVAKNCG----AD-VT--LVVDPAKEEESSIIERIRSAI 237 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHTT----CS-EE--EECCTTTSCHHHHHHHHHHHS
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHHhC----CC-EE--EcCcccccHHHHHHHHhcccc
Confidence 478999999875 6677777776 5667999999999988887542 11 11 12221 100 000 00
Q ss_pred CCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 178 PESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 178 ~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+.+|+|+..... ...++...++|+|+|.+++.-
T Consensus 238 g~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 238 GDLPNVTIDCSGN--------EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SSCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 2468998854321 234677788999999988753
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.31 Score=43.19 Aligned_cols=94 Identities=17% Similarity=0.132 Sum_probs=59.3
Q ss_pred CCCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC-CCCC--C-CCCCC
Q psy11741 106 CSTKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS-EDWN--P-PFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~~~--~-~~~~~ 179 (352)
.++.+||-.|| |.|..+..+++. .|++|+++|.++..++.+++. +.. ...|..+ .... + ....+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~---~G~~V~~~~~~~~~~~~~~~~----g~~---~~~d~~~~~~~~~~~~~~~~~ 213 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKL---KGCKVVGAAGSDEKIAYLKQI----GFD---AAFNYKTVNSLEEALKKASPD 213 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCSCHHHHHHHHCTT
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHhc----CCc---EEEecCCHHHHHHHHHHHhCC
Confidence 35789999998 455555555554 677999999999888887443 111 1234432 1100 0 00124
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.+|+|+.+... ..+..+.+.|++||.+++.
T Consensus 214 ~~d~vi~~~g~---------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 214 GYDCYFDNVGG---------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp CEEEEEESSCH---------HHHHHHHTTEEEEEEEEEC
T ss_pred CCeEEEECCCh---------HHHHHHHHHHhcCCEEEEE
Confidence 69998865431 2367788999999998874
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.092 Score=45.86 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeE---EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCC-CCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVF---VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFA-PESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~fD 182 (352)
...+++|+-||.|.++..+.. .|.+ +.++|+++.+++..+.+.. ...+..+|+.+.... .++ .+.+|
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~----aG~~~~~v~a~E~d~~a~~ty~~N~~----~~~~~~~DI~~i~~~-~i~~~~~~D 85 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKD----LGIQVDRYIASEVCEDSITVGMVRHQ----GKIMYVGDVRSVTQK-HIQEWGPFD 85 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHH----TTBCEEEEEEECCCHHHHHHHHHHTT----TCEEEECCGGGCCHH-HHHHTCCCS
T ss_pred CCCEEEEeCcCccHHHHHHHH----CCCccceEEEEECCHHHHHHHHHhCC----CCceeCCChHHccHH-HhcccCCcC
Confidence 367899999999999988877 4444 5899999999888777753 345778898753210 011 13689
Q ss_pred EEEeh
Q psy11741 183 IVLLI 187 (352)
Q Consensus 183 ~V~~~ 187 (352)
+++..
T Consensus 86 ll~gg 90 (295)
T 2qrv_A 86 LVIGG 90 (295)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99984
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.49 Score=46.57 Aligned_cols=155 Identities=14% Similarity=0.220 Sum_probs=91.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcC------CCCeEEEEEeCCHHHHHHHHhccccC-------------------------
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK------NDNVFVYGCDFSENAVNILKEHEEYK------------------------- 156 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~------~~~~~v~gvD~s~~~l~~a~~~~~~~------------------------- 156 (352)
...|+-||||.=.....|..... ..+..++=+|..+.+....+ .+...
T Consensus 108 ~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~-~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 108 KIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIE-LIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp EEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHH-HHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHH-HHHcChHHHHhhcccccccccccccccccc
Confidence 56899999999887777765321 13667888888554333322 22100
Q ss_pred CCceEEEEecCCCCCC------CCCC-CCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC----ch
Q psy11741 157 PDRCHAFVCDVTSEDW------NPPF-APESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY----DL 225 (352)
Q Consensus 157 ~~~v~~~~~d~~~~~~------~~~~-~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~ 225 (352)
..+..++.+|+.+..+ ...+ ....--++++-.++.+++++...++|+.+.+. |+|.+++.+...+ +.
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCCCCCCh
Confidence 0367888899875311 0112 33445567777889999999999999999864 6776666443222 11
Q ss_pred hhHhhhcCccccCceeecC--CCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 226 VQLRFKKGRCLQDNFYARG--DGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
....+. .++-..+ -.....+.+.++..+.|.+.||..+..
T Consensus 265 f~~~m~------~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~ 306 (695)
T 2zwa_A 265 FSKQML------AHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNV 306 (695)
T ss_dssp HHHHHH------HHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHH------HHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcce
Confidence 100000 0000000 111123567999999999999986543
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=92.76 E-value=0.076 Score=47.63 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=61.0
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC-C-CCCC
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP-P-FAPE 179 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~-~-~~~~ 179 (352)
.++.+||-+|+|. |..+..+++. .|+ +|+++|.++.-++.+++.-.. .. .|..+... .+ . ....
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~---~Ga~~Vi~~~~~~~~~~~~~~lGa~-----~v--i~~~~~~~~~~v~~~t~g~ 234 (352)
T 3fpc_A 165 KLGDTVCVIGIGPVGLMSVAGANH---LGAGRIFAVGSRKHCCDIALEYGAT-----DI--INYKNGDIVEQILKATDGK 234 (352)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHT---TTCSSEEEECCCHHHHHHHHHHTCC-----EE--ECGGGSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---cCCcEEEEECCCHHHHHHHHHhCCc-----eE--EcCCCcCHHHHHHHHcCCC
Confidence 3478999999875 6677777775 566 799999999988888775211 11 12211100 00 0 1134
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+|+|+-...- ...+..+.+.|+|||.+++.-
T Consensus 235 g~D~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 235 GVDKVVIAGGD--------VHTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp CEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECC
T ss_pred CCCEEEECCCC--------hHHHHHHHHHHhcCCEEEEec
Confidence 69999853221 135677888999999988753
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.72 E-value=1 Score=38.67 Aligned_cols=110 Identities=13% Similarity=0.101 Sum_probs=68.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCC------------HHHHHHHHhccccCCCceEEEEecCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFS------------ENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~ 175 (352)
+++||=-|++.| ++..+++.+...|++|+.+|.+ ...++.+.......+.++.++.+|+.+...-..
T Consensus 10 gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 88 (287)
T 3pxx_A 10 DKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR 88 (287)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 678888887665 5555555554478899999987 666665555544455678999999985320000
Q ss_pred -C-----CCCcceEEEehhhhhc----cChhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 176 -F-----APESLDIVLLIFVLDA----INPNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 176 -~-----~~~~fD~V~~~~~l~~----~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
+ .-+..|+++.+..+.. .+.+++. .+++.+...++.+|.++..
T Consensus 89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 89 ELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred HHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 0 0136899888654322 2334333 3345566677778877764
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.38 Score=43.20 Aligned_cols=98 Identities=16% Similarity=0.083 Sum_probs=61.6
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeE-EEEEeCCHHHHHHHHhccccCCCceEEEE-----ecCCCCCCCCCCCCC
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVF-VYGCDFSENAVNILKEHEEYKPDRCHAFV-----CDVTSEDWNPPFAPE 179 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~-----~d~~~~~~~~~~~~~ 179 (352)
++.+||=+|+|. |..+..+++. .|++ |+++|.++.-++.+++. .. .-+.+.. .|+.+..... ....
T Consensus 179 ~g~~VlV~GaG~vG~~aiqlak~---~Ga~~Vi~~~~~~~~~~~a~~l-~~--~~~~~~~~~~~~~~~~~~v~~~-t~g~ 251 (363)
T 3m6i_A 179 LGDPVLICGAGPIGLITMLCAKA---AGACPLVITDIDEGRLKFAKEI-CP--EVVTHKVERLSAEESAKKIVES-FGGI 251 (363)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHH---TTCCSEEEEESCHHHHHHHHHH-CT--TCEEEECCSCCHHHHHHHHHHH-TSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCCEEEEECCCHHHHHHHHHh-ch--hcccccccccchHHHHHHHHHH-hCCC
Confidence 478899999865 6777778776 5665 99999999999999876 21 1122211 1110000000 1134
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+|+|+-... . ...+..+.++|++||.+++.-
T Consensus 252 g~Dvvid~~g-----~---~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 252 EPAVALECTG-----V---ESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp CCSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECC
T ss_pred CCCEEEECCC-----C---hHHHHHHHHHhcCCCEEEEEc
Confidence 6999986422 1 235677888999999988753
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=92.39 E-value=0.39 Score=36.12 Aligned_cols=98 Identities=10% Similarity=0.049 Sum_probs=56.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|+=+|| |..+..++..+...+.+|+++|.++..++..++.. .+.+..+|..+...-....-..+|+|+..
T Consensus 4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~-----~~~~~~~d~~~~~~l~~~~~~~~d~vi~~ 76 (140)
T 1lss_A 4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAV 76 (140)
T ss_dssp -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-----CcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence 467888877 56666666655436789999999998776655421 24556666543110000112468988775
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
. +.......+..+.+.+.++ .+++.
T Consensus 77 ~-----~~~~~~~~~~~~~~~~~~~-~ii~~ 101 (140)
T 1lss_A 77 T-----GKEEVNLMSSLLAKSYGIN-KTIAR 101 (140)
T ss_dssp C-----SCHHHHHHHHHHHHHTTCC-CEEEE
T ss_pred e-----CCchHHHHHHHHHHHcCCC-EEEEE
Confidence 2 1123334455566667775 44443
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.079 Score=40.89 Aligned_cols=101 Identities=15% Similarity=0.227 Sum_probs=59.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCC----CCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFA----PESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~----~~~fD~ 183 (352)
..-|||+|-|+|+.--.|.+.+ |+..|+++|-.-. .+....++.-.++.+|+.+ .++.. ..+.-+
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~--P~R~I~vfDR~~~------~hp~~~P~~e~~ilGdi~~---tL~~~~~r~g~~a~L 109 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHV--QGREIYVFERAVA------SHPDSTPPEAQLILGDIRE---TLPATLERFGATASL 109 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHC--CSSCEEEEESSCC------CCGGGCCCGGGEEESCHHH---HHHHHHHHHCSCEEE
T ss_pred CCceEEecCCCChhHHHHHHhC--CCCcEEEEEeeec------cCCCCCCchHheecccHHH---HHHHHHHhcCCceEE
Confidence 5679999999999999999988 8889999986321 1112233445677777764 22210 233344
Q ss_pred EEehhhhhccCh--hHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINP--NKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+.+-...++-.. .....+-.-+..+|.|||+++-..
T Consensus 110 aHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~ 147 (174)
T 3iht_A 110 VHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSD 147 (174)
T ss_dssp EEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 443332222110 111122234668899999988753
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.2 Score=46.06 Aligned_cols=103 Identities=12% Similarity=0.077 Sum_probs=68.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|+=+|| |.++..+++.+...+..|+++|.++..++.+++. .+.++.+|+++...-....-...|+|++.
T Consensus 4 ~~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~------g~~vi~GDat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 4 GMRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT------TCCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC------CCeEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence 457888877 5577777766644788999999999999888753 25678899875321001123468888764
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
. +.+.....+....+.+.|...++.......
T Consensus 76 ~-----~~~~~n~~i~~~ar~~~p~~~Iiara~~~~ 106 (413)
T 3l9w_A 76 I-----DDPQTNLQLTEMVKEHFPHLQIIARARDVD 106 (413)
T ss_dssp C-----SSHHHHHHHHHHHHHHCTTCEEEEEESSHH
T ss_pred C-----CChHHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence 2 223444555666777889888887655443
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.38 Score=38.38 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=58.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCC-CeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCC-CCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKND-NVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF-APESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~V~ 185 (352)
+.+|+=+|| |..+..+++.+... +..|+++|.++..++.++.. .+..+.+|..+....... .-..+|+|+
T Consensus 39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~------g~~~~~gd~~~~~~l~~~~~~~~ad~vi 110 (183)
T 3c85_A 39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE------GRNVISGDATDPDFWERILDTGHVKLVL 110 (183)
T ss_dssp TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT------TCCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC------CCCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence 568888887 45666666555335 77999999999887776542 245666776532100011 124689888
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.... .......+-...+.+.|++.++...
T Consensus 111 ~~~~-----~~~~~~~~~~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 111 LAMP-----HHQGNQTALEQLQRRNYKGQIAAIA 139 (183)
T ss_dssp ECCS-----SHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred EeCC-----ChHHHHHHHHHHHHHCCCCEEEEEE
Confidence 6321 1222223334555667777777653
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.69 Score=41.49 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=61.3
Q ss_pred CCCCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC--CCCCC
Q psy11741 105 TCSTKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP--PFAPE 179 (352)
Q Consensus 105 ~~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~--~~~~~ 179 (352)
..++.+||-+|+|. |..+..+++. .|++|+++|.++.-++.+++.-. . ..+ |-....+ .+ .....
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~---~Ga~Vi~~~~~~~~~~~~~~lGa----~-~vi--~~~~~~~~~~v~~~~~g~ 256 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKA---TGAEVIVTSSSREKLDRAFALGA----D-HGI--NRLEEDWVERVYALTGDR 256 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHTC----S-EEE--ETTTSCHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH---cCCEEEEEecCchhHHHHHHcCC----C-EEE--cCCcccHHHHHHHHhCCC
Confidence 34588999999875 6677777776 67799999999998888876421 1 111 2110000 00 01133
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+|+|+-...- ..+..+.+.|+|||.+++..
T Consensus 257 g~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 257 GADHILEIAGG---------AGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp CEEEEEEETTS---------SCHHHHHHHEEEEEEEEEEC
T ss_pred CceEEEECCCh---------HHHHHHHHHhhcCCEEEEEe
Confidence 69999865331 23566778999999988764
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=0.65 Score=39.40 Aligned_cols=110 Identities=13% Similarity=-0.032 Sum_probs=66.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC-CCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN-DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
+++||=.| |+|.++..+++.+.. .+.+|++++.++..++.+.+.+...+.++.++.+|+.+...-.. + .-+.
T Consensus 4 ~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (276)
T 1wma_A 4 IHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82 (276)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 56777666 567778888877765 67899999999876666555444334568899999875310000 0 0136
Q ss_pred ceEEEehhhhhcc-----C-hhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDAI-----N-PNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~~-----~-~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
+|+|+.+...... + .+++. .+++.+.+.++++|.+++.
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~ 137 (276)
T 1wma_A 83 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 137 (276)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence 8998875533211 1 12222 3445566666667777664
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=91.63 E-value=0.22 Score=44.33 Aligned_cols=95 Identities=15% Similarity=0.222 Sum_probs=59.3
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCC--CCcceE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFA--PESLDI 183 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~fD~ 183 (352)
++.+||-+|+|. |..+..+++. .|++|+++|.++.-++.+++.- . . ...|..+........ .+.+|+
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~lG----a--~-~~~d~~~~~~~~~~~~~~~~~d~ 233 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKA---MGLNVVAVDIGDEKLELAKELG----A--D-LVVNPLKEDAAKFMKEKVGGVHA 233 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHTT----C--S-EEECTTTSCHHHHHHHHHSSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHCC----C--C-EEecCCCccHHHHHHHHhCCCCE
Confidence 478999999853 5566666665 5679999999999888887531 1 1 112333211000000 046899
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+..... ...++.+.++|+++|.+++..
T Consensus 234 vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 234 AVVTAVS--------KPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp EEESSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred EEECCCC--------HHHHHHHHHHhhcCCEEEEec
Confidence 8764321 235677888999999988753
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.12 Score=45.98 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=60.2
Q ss_pred CCCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C-CCCCCc
Q psy11741 106 CSTKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P-PFAPES 180 (352)
Q Consensus 106 ~~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~-~~~~~~ 180 (352)
.++.+||-.|+ |.|..+..+++. .|++|+++|.++.-++.+.+... .. ...|..+.... . ....+.
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~~~g---~~---~~~~~~~~~~~~~~~~~~~~~ 218 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARL---KGCRVVGIAGGAEKCRFLVEELG---FD---GAIDYKNEDLAAGLKRECPKG 218 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHTTC---CS---EEEETTTSCHHHHHHHHCTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHcC---CC---EEEECCCHHHHHHHHHhcCCC
Confidence 35889999998 456666677765 67799999999998888833321 11 11233221100 0 001346
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|+|+.+..- ..+..+.+.|++||.+++.
T Consensus 219 ~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 219 IDVFFDNVGG---------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp EEEEEESSCH---------HHHHHHHTTEEEEEEEEEC
T ss_pred ceEEEECCCc---------chHHHHHHHHhhCCEEEEE
Confidence 9998864321 2577788999999998874
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=91.57 E-value=0.061 Score=48.48 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCC-CCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE-DWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~fD~V 184 (352)
++.+||-+|+|. |..+..+++. .|++|+++|.|+.-++.+++.-. . ..+ |..+. .+..... +.+|+|
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~---~Ga~Vi~~~~~~~~~~~~~~lGa---~--~v~--~~~~~~~~~~~~~-~~~D~v 247 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKA---MGAETYVISRSSRKREDAMKMGA---D--HYI--ATLEEGDWGEKYF-DTFDLI 247 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---HTCEEEEEESSSTTHHHHHHHTC---S--EEE--EGGGTSCHHHHSC-SCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHHHcCC---C--EEE--cCcCchHHHHHhh-cCCCEE
Confidence 478999999854 6667777776 46689999999988888876321 1 111 22211 0000011 479999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+...... + ...++.+.++|++||.++..
T Consensus 248 id~~g~~--~----~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 248 VVCASSL--T----DIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EECCSCS--T----TCCTTTGGGGEEEEEEEEEC
T ss_pred EECCCCC--c----HHHHHHHHHHhcCCCEEEEe
Confidence 8644320 0 01244567889999998874
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.45 E-value=0.82 Score=38.79 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCC-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCC
Q psy11741 106 CSTKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAP 178 (352)
Q Consensus 106 ~~~~~vLD~GcG-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~ 178 (352)
.++++||=.|++ +|.++..+++.+...|++|+.++.+....+.+++..... ..+.++.+|+.+...- ..-.-
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 90 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF-GSELVFPCDVADDAQIDALFASLKTHW 90 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT-TCCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHc-CCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence 347899999875 356667776666447889999998865544444433322 3478899999853200 00001
Q ss_pred CcceEEEehhhhhc-----------cChhHHH-----------HHHHHHHHhcCCCEEEEEEe
Q psy11741 179 ESLDIVLLIFVLDA-----------INPNKMQ-----------HVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 179 ~~fD~V~~~~~l~~-----------~~~~~~~-----------~~l~~~~~~LkpgG~l~~~~ 219 (352)
+..|+++.+..+.. .+.+++. .+++.+...++++|.++...
T Consensus 91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 91 DSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp SCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 46899988654321 3334333 33445556666678776643
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.68 Score=41.12 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=60.8
Q ss_pred CCCCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCC-CCC--C-CCCC
Q psy11741 105 TCSTKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE-DWN--P-PFAP 178 (352)
Q Consensus 105 ~~~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~-~~~--~-~~~~ 178 (352)
..++.+||-.|| |.|..+..+++. .|++|+++|.++..++.+++... ... ..|..+. ... + ....
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~---~G~~V~~~~~~~~~~~~~~~~~g---~~~---~~d~~~~~~~~~~~~~~~~ 223 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKM---MGCYVVGSAGSKEKVDLLKTKFG---FDD---AFNYKEESDLTAALKRCFP 223 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHTSC---CSE---EEETTSCSCSHHHHHHHCT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHcC---Cce---EEecCCHHHHHHHHHHHhC
Confidence 345889999997 456666666665 56799999999998888874321 111 1243321 000 0 0012
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+.+|+|+.... . ..+..+.+.|++||.+++.
T Consensus 224 ~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 224 NGIDIYFENVG-------G--KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp TCEEEEEESSC-------H--HHHHHHHTTEEEEEEEEEC
T ss_pred CCCcEEEECCC-------H--HHHHHHHHHHhcCCEEEEE
Confidence 46999886432 1 2577788999999998874
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.27 E-value=0.65 Score=41.83 Aligned_cols=96 Identities=10% Similarity=0.068 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC-----CCCC
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP-----PFAP 178 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~ 178 (352)
.++.+||-+|+|. |..+..+++. .+. +|+++|.++.-++.+++.-. . .. .|..+....+ ....
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~---~Ga~~Vi~~~~~~~~~~~~~~lGa---~--~v--i~~~~~~~~~~~~~~~~~~ 260 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHS---AGAKRIIAVDLNPDKFEKAKVFGA---T--DF--VNPNDHSEPISQVLSKMTN 260 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH---TTCSEEEEECSCGGGHHHHHHTTC---C--EE--ECGGGCSSCHHHHHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---cCCCEEEEEcCCHHHHHHHHHhCC---c--eE--EeccccchhHHHHHHHHhC
Confidence 3478999999865 6677777776 566 89999999998888875421 1 11 1222100000 0012
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCC-EEEEEEe
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPG-GMVLFRD 219 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 219 (352)
+.+|+|+-.... ...+..+.++|+|| |.+++.-
T Consensus 261 ~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 261 GGVDFSLECVGN--------VGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp SCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCEEEECCCC--------HHHHHHHHHHhhcCCcEEEEEc
Confidence 368998853221 23567788999999 9988753
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.26 Score=43.93 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEE----ecCCCCCCCCCCCCCcc
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFV----CDVTSEDWNPPFAPESL 181 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~----~d~~~~~~~~~~~~~~f 181 (352)
++.+||-+|+|. |..+..+++... +|++|+++|.|+.-++.+++.-. . ..+. .|... .+. ....+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~-~Ga~Vi~~~~~~~~~~~~~~lGa---~--~vi~~~~~~~~~~---~~~-~g~g~ 239 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALM-KNITIVGISRSKKHRDFALELGA---D--YVSEMKDAESLIN---KLT-DGLGA 239 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHC-TTCEEEEECSCHHHHHHHHHHTC---S--EEECHHHHHHHHH---HHH-TTCCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHhCC---C--EEeccccchHHHH---Hhh-cCCCc
Confidence 388999999964 667777777631 27799999999998888876421 1 1111 11110 011 12369
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
|+|+-.... ...++.+.++|+|||.+++.
T Consensus 240 D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 240 SIAIDLVGT--------EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEEESSCC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred cEEEECCCC--------hHHHHHHHHHhhcCCEEEEe
Confidence 999864321 23567788999999998874
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=91.18 E-value=0.97 Score=40.87 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=49.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC-----CCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN-----DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+..|+|+|.|+|.++..+++.+.. ...+++.||+|+...+.-++++.... ++.+.. ++. .+| ++ .-
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~-~v~W~~-~l~----~lp--~~-~~ 151 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIR-NIHWHD-SFE----DVP--EG-PA 151 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCS-SEEEES-SGG----GSC--CS-SE
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCC-CeEEeC-Chh----hcC--CC-Ce
Confidence 457999999999999888765421 34589999999987776555543321 354432 222 122 22 34
Q ss_pred EEEehhhhhccC
Q psy11741 183 IVLLIFVLDAIN 194 (352)
Q Consensus 183 ~V~~~~~l~~~~ 194 (352)
+|+++.++..++
T Consensus 152 ~viANE~fDAlP 163 (387)
T 1zkd_A 152 VILANEYFDVLP 163 (387)
T ss_dssp EEEEESSGGGSC
T ss_pred EEEeccccccCc
Confidence 666666665553
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=91.15 E-value=0.19 Score=44.89 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C-C-CCCCc
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P-P-FAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~-~-~~~~~ 180 (352)
++.+||-+|+|. |..+..+++. .|+ +|+++|.++.-++.+++.-. . .. .|..+..+. + . .....
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~---~Ga~~Vi~~~~~~~~~~~~~~~Ga---~--~~--~~~~~~~~~~~v~~~~~g~g 236 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKA---SGAYPVIVSEPSDFRRELAKKVGA---D--YV--INPFEEDVVKEVMDITDGNG 236 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHH---TTCCSEEEECSCHHHHHHHHHHTC---S--EE--ECTTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCCEEEEECCCHHHHHHHHHhCC---C--EE--ECCCCcCHHHHHHHHcCCCC
Confidence 488999999953 5666667765 566 89999999998888875321 1 11 222211000 0 0 01236
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+|+..... ...++.+.+.|+++|.++...
T Consensus 237 ~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 237 VDVFLEFSGA--------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp EEEEEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence 9999864321 235677888999999988753
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.14 E-value=0.13 Score=46.70 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=60.9
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC-----CCCC
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP-----PFAP 178 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~ 178 (352)
.++.+||=+|+|. |..+..+++. .++ +|+++|.++.-++.+++.-. . .. .|..+....+ ...+
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~---~Ga~~Vi~~~~~~~~~~~a~~lGa----~-~v--i~~~~~~~~~~~~i~~~~~ 261 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKT---AGASRIIGIDIDSKKYETAKKFGV----N-EF--VNPKDHDKPIQEVIVDLTD 261 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHH---HTCSCEEEECSCTTHHHHHHTTTC----C-EE--ECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHHHHcCC----c-EE--EccccCchhHHHHHHHhcC
Confidence 3578999999864 6777777776 455 79999999999998876421 1 11 1221100000 0113
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCC-EEEEEEe
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPG-GMVLFRD 219 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 219 (352)
+.+|+|+-... -...+..+.+.|++| |.+++.-
T Consensus 262 gg~D~vid~~g--------~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 262 GGVDYSFECIG--------NVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp SCBSEEEECSC--------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCEEEECCC--------CHHHHHHHHHHhhccCCEEEEEc
Confidence 47999986422 124577788999997 9988754
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.13 E-value=0.43 Score=42.46 Aligned_cols=94 Identities=18% Similarity=0.159 Sum_probs=60.6
Q ss_pred CCCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC-C-CCCC
Q psy11741 106 CSTKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP-P-FAPE 179 (352)
Q Consensus 106 ~~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~-~-~~~~ 179 (352)
.++.+||-.|+ |.|..+..+++. .+.+|+++|.++..++.+++.- .. . ..|..+... .+ . ....
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~---~G~~Vi~~~~~~~~~~~~~~~g----a~-~--~~d~~~~~~~~~~~~~~~~~ 234 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKL---FGARVIATAGSEDKLRRAKALG----AD-E--TVNYTHPDWPKEVRRLTGGK 234 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHT----CS-E--EEETTSTTHHHHHHHHTTTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHhcC----CC-E--EEcCCcccHHHHHHHHhCCC
Confidence 34789999998 566677777765 5679999999999888886531 11 1 124332110 00 0 1124
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.+|+|+.... . ..++.+.+.|+++|.+++.
T Consensus 235 ~~d~vi~~~g-~--------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 235 GADKVVDHTG-A--------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp CEEEEEESSC-S--------SSHHHHHHHEEEEEEEEES
T ss_pred CceEEEECCC-H--------HHHHHHHHhhccCCEEEEE
Confidence 6999986543 1 2366778899999988874
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=0.21 Score=44.59 Aligned_cols=95 Identities=21% Similarity=0.273 Sum_probs=59.1
Q ss_pred CCCeEEEEcCC--ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C-CCCC-Cc
Q psy11741 107 STKNILEIGCG--VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P-PFAP-ES 180 (352)
Q Consensus 107 ~~~~vLD~GcG--~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~-~~~~-~~ 180 (352)
++.+||-.|+| .|..+..+++.. .+++|+++|.++..++.+++.- ... ..|..+.... . .... +.
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~--~Ga~Vi~~~~~~~~~~~~~~~g----~~~---~~~~~~~~~~~~~~~~~~~~~ 240 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAV--SGATIIGVDVREEAVEAAKRAG----ADY---VINASMQDPLAEIRRITESKG 240 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH--TCCEEEEEESSHHHHHHHHHHT----CSE---EEETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECCCccHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHhC----CCE---EecCCCccHHHHHHHHhcCCC
Confidence 47899999997 445555666652 2779999999999888886531 111 1232221100 0 0111 47
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|+|+....- ...++.+.++|+|+|.+++.
T Consensus 241 ~d~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 241 VDAVIDLNNS--------EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp EEEEEESCCC--------HHHHTTGGGGEEEEEEEEEC
T ss_pred ceEEEECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 9999864321 23567778899999998874
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=90.97 E-value=0.92 Score=40.81 Aligned_cols=96 Identities=11% Similarity=0.102 Sum_probs=60.2
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC-----CCCC
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP-----PFAP 178 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~ 178 (352)
.++.+||-+|+|. |..+..+++. .+. +|+++|.++.-++.+++.-. . .. .|..+....+ ....
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~---~Ga~~Vi~~~~~~~~~~~~~~lGa----~-~v--i~~~~~~~~~~~~~~~~~~ 259 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKA---AGAARIIGVDINKDKFAKAKEVGA----T-EC--VNPQDYKKPIQEVLTEMSN 259 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH---TTCSEEEEECSCGGGHHHHHHTTC----S-EE--ECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHHHHhCC----c-eE--ecccccchhHHHHHHHHhC
Confidence 3478999999865 6677777776 566 89999999998888875421 1 11 1222100000 0112
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCC-EEEEEEe
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPG-GMVLFRD 219 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 219 (352)
+.+|+|+-...- ...+..+.++|+++ |.+++.-
T Consensus 260 ~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 260 GGVDFSFEVIGR--------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp SCBSEEEECSCC--------HHHHHHHHHHBCTTTCEEEECS
T ss_pred CCCcEEEECCCC--------HHHHHHHHHHhhcCCcEEEEec
Confidence 368998754221 23567788899999 9988743
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=2 Score=36.27 Aligned_cols=81 Identities=21% Similarity=0.179 Sum_probs=52.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CC------CCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FA------PES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~------~~~ 180 (352)
+++||=.|++ |.++..+++.+...|++|++++.++..++...+.....+.++.++.+|+.+...-.. +. .+.
T Consensus 9 ~k~vlVTGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~ 87 (260)
T 2ae2_A 9 GCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK 87 (260)
T ss_dssp TCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 6778877765 455666666554478899999999877766544443334568888999875310000 00 157
Q ss_pred ceEEEehhh
Q psy11741 181 LDIVLLIFV 189 (352)
Q Consensus 181 fD~V~~~~~ 189 (352)
.|+++.+..
T Consensus 88 id~lv~~Ag 96 (260)
T 2ae2_A 88 LNILVNNAG 96 (260)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899888654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.92 E-value=0.44 Score=36.80 Aligned_cols=102 Identities=8% Similarity=0.008 Sum_probs=61.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCC-HHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFS-ENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+|+=+|| |..+..+++.+...+..|+++|.+ +...+...... ...+.++.+|..+...-....-...|+|++
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~---~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---GDNADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---CTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh---cCCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence 456777775 677777777664467899999997 44443333221 123678889886432100111246788876
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.. +.+.....+....+.+.|...++...
T Consensus 78 ~~-----~~d~~n~~~~~~a~~~~~~~~ii~~~ 105 (153)
T 1id1_A 78 LS-----DNDADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp CS-----SCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred ec-----CChHHHHHHHHHHHHHCCCCEEEEEE
Confidence 42 22344455566667777777777653
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=0.39 Score=37.21 Aligned_cols=100 Identities=20% Similarity=0.158 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~V~ 185 (352)
++.+|+=+|| |.++..+++.+...+.+|+++|.++..++.++. ...+..+.+|..+.. .+. ..-..+|+|+
T Consensus 18 ~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~-----~~g~~~~~~d~~~~~-~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 18 KSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS-----EFSGFTVVGDAAEFE-TLKECGMEKADMVF 89 (155)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT-----TCCSEEEESCTTSHH-HHHTTTGGGCSEEE
T ss_pred CCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh-----cCCCcEEEecCCCHH-HHHHcCcccCCEEE
Confidence 3678999987 455665555553367899999999875443321 122445556654211 010 1124588887
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.... .......+..+.+.+.|...++...
T Consensus 90 ~~~~-----~~~~~~~~~~~~~~~~~~~~iv~~~ 118 (155)
T 2g1u_A 90 AFTN-----DDSTNFFISMNARYMFNVENVIARV 118 (155)
T ss_dssp ECSS-----CHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred EEeC-----CcHHHHHHHHHHHHHCCCCeEEEEE
Confidence 6432 2333444445555556666666643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.76 Score=41.32 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC-----CCC
Q psy11741 105 TCSTKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP-----PFA 177 (352)
Q Consensus 105 ~~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~ 177 (352)
..++.+||-+|+|. |..+..+++. .+. +|+++|.|+..++.+++.-. . .. .|..+....+ ...
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~---~Ga~~Vi~~~~~~~~~~~~~~lGa---~--~v--i~~~~~~~~~~~~v~~~~ 257 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKV---AGASRIIGVDINKDKFARAKEFGA---T--EC--INPQDFSKPIQEVLIEMT 257 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHH---HTCSEEEEECSCGGGHHHHHHHTC---S--EE--ECGGGCSSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHHHHcCC---c--eE--eccccccccHHHHHHHHh
Confidence 34578999999865 6677777776 455 89999999998888875421 1 11 1222100000 011
Q ss_pred CCcceEEEehhhhhccChhHHHHHHHHHHHhcCCC-EEEEEEe
Q psy11741 178 PESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPG-GMVLFRD 219 (352)
Q Consensus 178 ~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 219 (352)
.+.+|+|+-.... ...+..+.++|+|+ |.+++.-
T Consensus 258 ~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 258 DGGVDYSFECIGN--------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp TSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCCEEEECCCc--------HHHHHHHHHhhccCCcEEEEEe
Confidence 2369998854221 23567788999999 9988753
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.44 Score=43.54 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=58.4
Q ss_pred CCCCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC-----CCCCC
Q psy11741 105 TCSTKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW-----NPPFA 177 (352)
Q Consensus 105 ~~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~ 177 (352)
..++.+||=+|+|. |..+..+++. .|+ +|+++|.++.-++.+++.-.. .. .|..+..+ .+ ..
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~---~Ga~~Vi~~~~~~~~~~~~~~lGa~-----~v--i~~~~~~~~~~i~~~-t~ 279 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKH---AGASKVILSEPSEVRRNLAKELGAD-----HV--IDPTKENFVEAVLDY-TN 279 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHH---TTCSEEEEECSCHHHHHHHHHHTCS-----EE--ECTTTSCHHHHHHHH-TT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH---cCCCEEEEECCCHHHHHHHHHcCCC-----EE--EcCCCCCHHHHHHHH-hC
Confidence 34588999999864 5666777775 566 899999999999988765211 11 12221100 00 11
Q ss_pred CCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 178 PESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 178 ~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
...+|+|+-...-. ......+++.+.+.+++||.+++.-
T Consensus 280 g~g~D~vid~~g~~---~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 280 GLGAKLFLEATGVP---QLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp TCCCSEEEECSSCH---HHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCCCCEEEECCCCc---HHHHHHHHHHHHhccCCCcEEEEeC
Confidence 23699998532211 0122233333334459999988853
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=90.46 E-value=0.83 Score=41.11 Aligned_cols=96 Identities=10% Similarity=0.006 Sum_probs=60.3
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC-----CCCC
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP-----PFAP 178 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~ 178 (352)
.++.+||-+|+|. |..+..+++. .++ +|+++|.++.-++.+++.-. . .. .|..+....+ ....
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~---~Ga~~Vi~~~~~~~~~~~a~~lGa----~-~v--i~~~~~~~~~~~~i~~~t~ 259 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKA---AGASRIIGVGTHKDKFPKAIELGA----T-EC--LNPKDYDKPIYEVICEKTN 259 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH---HTCSEEEEECSCGGGHHHHHHTTC----S-EE--ECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---cCCCeEEEECCCHHHHHHHHHcCC----c-EE--EecccccchHHHHHHHHhC
Confidence 3578999999865 6677777776 455 89999999998888875421 1 11 1221100000 0112
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCC-EEEEEEe
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPG-GMVLFRD 219 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 219 (352)
+.+|+|+-...- ...+..+.++|+++ |.+++.-
T Consensus 260 gg~Dvvid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 260 GGVDYAVECAGR--------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp SCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred CCCCEEEECCCC--------HHHHHHHHHHHhcCCCEEEEEc
Confidence 379999854221 23567788999999 9988743
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=2.7 Score=36.23 Aligned_cols=112 Identities=14% Similarity=0.086 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCcc-ccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC------CCCC
Q psy11741 107 STKNILEIGCGVG-NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP------FAPE 179 (352)
Q Consensus 107 ~~~~vLD~GcG~G-~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~ 179 (352)
.++++|=.|+++| .++..+++.+...|++|+.++.++...+.+.+..... .++.++.+|+.+...-.. -.-+
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 108 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL-GAFVAGHCDVADAASIDAVFETLEKKWG 108 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH-TCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-CCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence 3778898887643 3555555554337889999999876555444433222 357888999985320000 0014
Q ss_pred cceEEEehhhhh----------ccChhHHH-----------HHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLD----------AINPNKMQ-----------HVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~----------~~~~~~~~-----------~~l~~~~~~LkpgG~l~~~~ 219 (352)
..|+++.+..+. ..+.+++. .+++.+...++.+|.++...
T Consensus 109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 689988765432 22333333 34556667777888877653
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.33 E-value=0.98 Score=40.78 Aligned_cols=96 Identities=15% Similarity=0.046 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCC-eEEEEEeCCHHHHHHHHhccccCCCceEEEEe------cCCCCCCCCCCCC
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDN-VFVYGCDFSENAVNILKEHEEYKPDRCHAFVC------DVTSEDWNPPFAP 178 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~------d~~~~~~~~~~~~ 178 (352)
++.+||-+|+|. |..+..+++. .| .+|+++|.|+.-++.+++.-. . ..+.. |+.+..... ...
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~---~Ga~~Vi~~~~~~~~~~~~~~lGa----~-~vi~~~~~~~~~~~~~v~~~-~~g 265 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARS---LGAENVIVIAGSPNRLKLAEEIGA----D-LTLNRRETSVEERRKAIMDI-THG 265 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHH---TTBSEEEEEESCHHHHHHHHHTTC----S-EEEETTTSCHHHHHHHHHHH-TTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHH---cCCceEEEEcCCHHHHHHHHHcCC----c-EEEeccccCcchHHHHHHHH-hCC
Confidence 478999999653 5666777776 56 599999999999888875321 1 11111 100000000 012
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
..+|+|+-.... ...+..+.++|+++|.+++.-
T Consensus 266 ~g~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 266 RGADFILEATGD--------SRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp SCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECC
T ss_pred CCCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 369999864321 124667788999999988753
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=90.30 E-value=0.9 Score=40.89 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC-----CCCC
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP-----PFAP 178 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~ 178 (352)
.++.+||-+|+|. |..+..+++. .++ +|+++|.++.-++.+++.-. . .. .|..+....+ ....
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~---~Ga~~Vi~~~~~~~~~~~a~~lGa----~-~v--i~~~~~~~~~~~~v~~~~~ 263 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKI---AGASRIIAIDINGEKFPKAKALGA----T-DC--LNPRELDKPVQDVITELTA 263 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH---TTCSEEEEECSCGGGHHHHHHTTC----S-EE--ECGGGCSSCHHHHHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHHHHhCC----c-EE--EccccccchHHHHHHHHhC
Confidence 3478999999864 6677777776 566 89999999998888875421 1 11 1222100000 0012
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCC-EEEEEEe
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPG-GMVLFRD 219 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 219 (352)
+.+|+|+-...- ...+..+.++|++| |.+++.-
T Consensus 264 ~g~Dvvid~~G~--------~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 264 GGVDYSLDCAGT--------AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp SCBSEEEESSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred CCccEEEECCCC--------HHHHHHHHHHhhcCCCEEEEEC
Confidence 368998753211 23567788999999 9988743
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=90.26 E-value=2.6 Score=35.86 Aligned_cols=86 Identities=9% Similarity=0.125 Sum_probs=57.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
.++||=.|| |.++..+++.+...+.+|++++-++........ .+++++.+|+.+. . -..+|+|+..
T Consensus 5 ~~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~------~~~~~~~~D~~d~----~--~~~~d~vi~~ 70 (286)
T 3ius_A 5 TGTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA------SGAEPLLWPGEEP----S--LDGVTHLLIS 70 (286)
T ss_dssp CCEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH------TTEEEEESSSSCC----C--CTTCCEEEEC
T ss_pred cCcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh------CCCeEEEeccccc----c--cCCCCEEEEC
Confidence 368999994 889988888775578899999998865544332 3588999999862 2 3468998876
Q ss_pred hhhhccChhHHHHHHHHHHH
Q psy11741 188 FVLDAINPNKMQHVINQVYK 207 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~ 207 (352)
.............+++.+.+
T Consensus 71 a~~~~~~~~~~~~l~~a~~~ 90 (286)
T 3ius_A 71 TAPDSGGDPVLAALGDQIAA 90 (286)
T ss_dssp CCCBTTBCHHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHHh
Confidence 55432222233444444444
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=90.15 E-value=0.29 Score=43.02 Aligned_cols=87 Identities=10% Similarity=0.122 Sum_probs=57.1
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+||=+|+|. |..+..+++. .|++|++++ |+.-++.+++.-. .....| .+ .+ .+.+|+|
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~---~Ga~Vi~~~-~~~~~~~~~~lGa------~~v~~d-~~---~v---~~g~Dvv 203 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNN---AGYVVDLVS-ASLSQALAAKRGV------RHLYRE-PS---QV---TQKYFAI 203 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHH---HTCEEEEEC-SSCCHHHHHHHTE------EEEESS-GG---GC---CSCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---cCCEEEEEE-ChhhHHHHHHcCC------CEEEcC-HH---Hh---CCCccEE
Confidence 3588999999953 6777778876 566999999 9988888876421 111123 11 22 5679999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+-...- + .+..+.++|+|+|.++..
T Consensus 204 ~d~~g~-----~----~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 204 FDAVNS-----Q----NAAALVPSLKANGHIICI 228 (315)
T ss_dssp ECC----------------TTGGGEEEEEEEEEE
T ss_pred EECCCc-----h----hHHHHHHHhcCCCEEEEE
Confidence 853221 1 124567899999998876
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.14 E-value=0.3 Score=40.33 Aligned_cols=100 Identities=9% Similarity=0.008 Sum_probs=62.1
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+|+=+|+ |.++..+++.+...+..|+++|.++..++...+.. .+.++.+|..+...-....-...|+|++..
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-----~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~- 73 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-----KATIIHGDGSHKEILRDAEVSKNDVVVILT- 73 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-----SSEEEESCTTSHHHHHHHTCCTTCEEEECC-
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-----CCeEEEcCCCCHHHHHhcCcccCCEEEEec-
Confidence 4566665 77888888777547889999999998877654331 256788888753110001124688888642
Q ss_pred hhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 190 LDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 190 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+.+.....+..+.+.+.|...++....+
T Consensus 74 ----~~d~~n~~~~~~a~~~~~~~~iia~~~~ 101 (218)
T 3l4b_C 74 ----PRDEVNLFIAQLVMKDFGVKRVVSLVND 101 (218)
T ss_dssp ----SCHHHHHHHHHHHHHTSCCCEEEECCCS
T ss_pred ----CCcHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2233445556666666677676664433
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.11 E-value=1.5 Score=37.15 Aligned_cols=110 Identities=9% Similarity=-0.013 Sum_probs=65.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEE-eCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGC-DFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gv-D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
++++|=.|++.| ++..+++.+...|++|+.+ +.++...+.+.+.....+.++.++.+|+.+...-.. + .-+.
T Consensus 8 ~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 86 (259)
T 3edm_A 8 NRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGE 86 (259)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 678888887665 5555555554478899888 666666665555544445678899999985320000 0 0146
Q ss_pred ceEEEehhhhh-------ccChhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLD-------AINPNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~-------~~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
.|+++.+.... ..+.+++. .+.+.+...++++|.++..
T Consensus 87 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i 142 (259)
T 3edm_A 87 IHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTF 142 (259)
T ss_dssp EEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 89988765322 22333333 3344555666667777664
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.07 E-value=1.4 Score=39.25 Aligned_cols=95 Identities=17% Similarity=0.242 Sum_probs=59.6
Q ss_pred CCCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C--CCCCC
Q psy11741 106 CSTKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P--PFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~--~~~~~ 179 (352)
.++.+||-.|+ |.|..+..+++. .|++|+++|.++..++.+++.- .. ...|..+.... + .....
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~~g----a~---~~~d~~~~~~~~~~~~~~~~~ 238 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARA---YGLKILGTAGTEEGQKIVLQNG----AH---EVFNHREVNYIDKIKKYVGEK 238 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHTT----CS---EEEETTSTTHHHHHHHHHCTT
T ss_pred CCcCEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCChhHHHHHHHcC----CC---EEEeCCCchHHHHHHHHcCCC
Confidence 34789999997 445566666665 6779999999998888776531 11 11233321100 0 01123
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+|+|+.+..- ..+....+.|+++|.+++.-
T Consensus 239 ~~D~vi~~~G~---------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 239 GIDIIIEMLAN---------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp CEEEEEESCHH---------HHHHHHHHHEEEEEEEEECC
T ss_pred CcEEEEECCCh---------HHHHHHHHhccCCCEEEEEe
Confidence 69999865331 24567789999999988753
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=0.17 Score=45.19 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C-CCCCCcc
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P-PFAPESL 181 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~-~~~~~~f 181 (352)
++.+||-+|+|. |..+..+++. .|+ +|+++|.++.-++.+++. .. . ..|..+..+. + ......+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~---~Ga~~Vi~~~~~~~~~~~~~~l-a~-----~--v~~~~~~~~~~~~~~~~~~g~ 232 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRA---SGAGPILVSDPNPYRLAFARPY-AD-----R--LVNPLEEDLLEVVRRVTGSGV 232 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHH---TTCCSEEEECSCHHHHGGGTTT-CS-----E--EECTTTSCHHHHHHHHHSSCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cCCCEEEEECCCHHHHHHHHHh-HH-----h--ccCcCccCHHHHHHHhcCCCC
Confidence 478999999854 5666677765 566 899999999877766543 11 1 1222211000 0 0002468
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
|+|+....- ...++...+.|+++|.+++.
T Consensus 233 D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 233 EVLLEFSGN--------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp EEEEECSCC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 999864321 23567788899999998875
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.01 E-value=0.2 Score=45.13 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=61.0
Q ss_pred CCCeEEEEc-C-CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC-C-CCCCCCcce
Q psy11741 107 STKNILEIG-C-GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW-N-PPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~G-c-G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~-~~~~~~~fD 182 (352)
++.+||=.| + |.|..+..+++.. .+.+|+++|.++.-++.+++.-. . .. .|..+... . .....+.+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~--~g~~Vi~~~~~~~~~~~~~~lGa---d--~v--i~~~~~~~~~v~~~~~~g~D 241 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQR--TDLTVIATASRPETQEWVKSLGA---H--HV--IDHSKPLAAEVAALGLGAPA 241 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHH--CCSEEEEECSSHHHHHHHHHTTC---S--EE--ECTTSCHHHHHHTTCSCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHcCC---C--EE--EeCCCCHHHHHHHhcCCCce
Confidence 477899998 4 4477888888764 56799999999998888876421 1 11 12111000 0 011245799
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|+-... -...+..+.++|+|||.+++.
T Consensus 242 vvid~~g--------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 242 FVFSTTH--------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEECSC--------HHHHHHHHHHHSCTTCEEEEC
T ss_pred EEEECCC--------chhhHHHHHHHhcCCCEEEEE
Confidence 9876321 124567788899999998875
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=0.43 Score=42.71 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=56.7
Q ss_pred CeEEEEcCCc-cccH-HHHH-hhcCCCCeE-EEEEeCCHH---HHHHHHhccccCCCceEEEEecCCCCCCCC--CCCCC
Q psy11741 109 KNILEIGCGV-GNSV-FPIV-EHCKNDNVF-VYGCDFSEN---AVNILKEHEEYKPDRCHAFVCDVTSEDWNP--PFAPE 179 (352)
Q Consensus 109 ~~vLD~GcG~-G~~~-~~l~-~~~~~~~~~-v~gvD~s~~---~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~~ 179 (352)
.+||-+|+|. |..+ ..++ +. .|++ |+++|.++. -++.+++.- ...+ |..+..+.. .. .+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~---~Ga~~Vi~~~~~~~~~~~~~~~~~lG------a~~v--~~~~~~~~~i~~~-~g 241 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDD---KGYENLYCLGRRDRPDPTIDIIEELD------ATYV--DSRQTPVEDVPDV-YE 241 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCT---TCCCEEEEEECCCSSCHHHHHHHHTT------CEEE--ETTTSCGGGHHHH-SC
T ss_pred CEEEEECCCHHHHHHHHHHHHHH---cCCcEEEEEeCCcccHHHHHHHHHcC------Cccc--CCCccCHHHHHHh-CC
Confidence 8999999843 5566 6666 54 5666 999999988 788886532 1222 433211000 01 23
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.+|+|+-... . ...++.+.++|++||.+++.
T Consensus 242 g~Dvvid~~g-----~---~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 242 QMDFIYEATG-----F---PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp CEEEEEECSC-----C---HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECCC-----C---hHHHHHHHHHHhcCCEEEEE
Confidence 6899875322 1 13567788999999998874
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=89.85 E-value=2.6 Score=35.80 Aligned_cols=112 Identities=17% Similarity=0.125 Sum_probs=67.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeC-CHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDF-SENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APE 179 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~ 179 (352)
.++++|=.|++.| ++..+++.+...|++|+.++. +...++...+.....+.++.++.+|+.+...-.. + .-+
T Consensus 17 ~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 95 (270)
T 3is3_A 17 DGKVALVTGSGRG-IGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFG 95 (270)
T ss_dssp TTCEEEESCTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3678888886654 555665555447889998776 4455555444444445678999999985320000 0 013
Q ss_pred cceEEEehhhhhc------cChhHHH-----------HHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDA------INPNKMQ-----------HVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~------~~~~~~~-----------~~l~~~~~~LkpgG~l~~~~ 219 (352)
..|+++.+..+.. ++.+++. .+.+.+.+.++++|.+++..
T Consensus 96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 152 (270)
T 3is3_A 96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS 152 (270)
T ss_dssp CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 6799887654322 2333333 34556777788888877653
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=89.76 E-value=2.5 Score=36.42 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=66.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH-HHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN-AVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APE 179 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~ 179 (352)
.+++||=.|++.| ++..+++.+...|++|+.++.+.. ..+.+.+.....+.++.++.+|+.+...-.. + .-+
T Consensus 46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 124 (291)
T 3ijr_A 46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLG 124 (291)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4678888887655 555666555447889999998765 3333433333445678899999985310000 0 014
Q ss_pred cceEEEehhhhh-------ccChhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLD-------AINPNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~-------~~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
..|+++.+.... .++.+++. .+++.+.+.++.+|.++..
T Consensus 125 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 125 SLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp SCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 689988754322 12333333 3445566677788877764
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.55 E-value=1.6 Score=37.70 Aligned_cols=82 Identities=13% Similarity=-0.015 Sum_probs=53.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceEEEEecCCCC-CC------CCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCHAFVCDVTSE-DW------NPPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~-~~------~~~~~~~ 179 (352)
+++||=.|++. .++..+++.+...|++|++++.++..++.+.+.+.. .+.++.++.+|+.+. .. ......+
T Consensus 12 ~k~vlITGas~-GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g 90 (311)
T 3o26_A 12 RRCAVVTGGNK-GIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFG 90 (311)
T ss_dssp CCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred CcEEEEecCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhCC
Confidence 66788777664 456666665544788999999998877666555443 335789999999863 10 0000014
Q ss_pred cceEEEehhhh
Q psy11741 180 SLDIVLLIFVL 190 (352)
Q Consensus 180 ~fD~V~~~~~l 190 (352)
.+|+++.+..+
T Consensus 91 ~iD~lv~nAg~ 101 (311)
T 3o26_A 91 KLDILVNNAGV 101 (311)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 68999887654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.48 E-value=0.54 Score=41.55 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=38.7
Q ss_pred CceEEEEecCCCCCCCCCCCCCcceEEEehhh--h------------hccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 158 DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV--L------------DAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 158 ~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~--l------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
....++++|..+... .+++++||+|++.=- . .++ ......+++++++|+|||.+++..
T Consensus 13 ~~~~ii~gD~~~~l~--~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~--~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 13 SNGSMYIGDSLELLE--SFPEESISLVMTSPPFALQRKKEYGNLEQHEYV--DWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp SSEEEEESCHHHHGG--GSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHh--hCCCCCeeEEEECCCCCCCcccccCCcCHHHHH--HHHHHHHHHHHHHCcCCcEEEEEE
Confidence 346777888754211 134678999888311 1 111 356788999999999999999864
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.44 E-value=2.1 Score=36.74 Aligned_cols=107 Identities=8% Similarity=0.075 Sum_probs=67.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
++.+|=-|+++| ++..+++.+...|++|+.+|.+++.++.+.+.. +.++..+.+|+.+...- ....-++.
T Consensus 29 gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 29 AKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---GGGAVGIQADSANLAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp TCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHHHSCE
T ss_pred CCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---CCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 777888887766 555666555448999999999998887765543 35678889998853210 00011578
Q ss_pred eEEEehhhhh------ccChhHHHHH-----------HHHHHHhcCCCEEEEEE
Q psy11741 182 DIVLLIFVLD------AINPNKMQHV-----------INQVYKYLKPGGMVLFR 218 (352)
Q Consensus 182 D~V~~~~~l~------~~~~~~~~~~-----------l~~~~~~LkpgG~l~~~ 218 (352)
|+++.+.... .++++++..+ .+.+...|+.+|.++..
T Consensus 105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni 158 (273)
T 4fgs_A 105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT 158 (273)
T ss_dssp EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 9988755332 2244444433 34455667777776654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=89.44 E-value=2.1 Score=36.08 Aligned_cols=107 Identities=15% Similarity=0.213 Sum_probs=66.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC------CCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP------FAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~f 181 (352)
++++|=.|++.| ++..+++.+...|++|+.+|.++..++...+.. +.++.++.+|+.+...-.. ..-+..
T Consensus 8 gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (255)
T 4eso_A 8 GKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEF---GPRVHALRSDIADLNEIAVLGAAAGQTLGAI 83 (255)
T ss_dssp TCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 678888887655 555665555447889999999998777665543 3468889999875310000 001468
Q ss_pred eEEEehhhhh------ccChhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 182 DIVLLIFVLD------AINPNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 182 D~V~~~~~l~------~~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
|+++.+..+. ..+.+++. .+.+.+...++.+|.++..
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 137 (255)
T 4eso_A 84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT 137 (255)
T ss_dssp EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9988755432 22333333 2345556666778877764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=0.89 Score=39.93 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=59.0
Q ss_pred eEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 110 NILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 110 ~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+||=.|+ |.|..+..+++. .|++|++++.|+.-++.+++.-. ...+-..+.. .......+.+|+|+-.
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~---~Ga~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~---~~~~~~~~~~d~v~d~ 218 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHK---LGYQVAAVSGRESTHGYLKSLGA----NRILSRDEFA---ESRPLEKQLWAGAIDT 218 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHH---TTCCEEEEESCGGGHHHHHHHTC----SEEEEGGGSS---CCCSSCCCCEEEEEES
T ss_pred eEEEECCCcHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHhcCC----CEEEecCCHH---HHHhhcCCCccEEEEC
Confidence 4998887 557788888886 56799999999998888876421 1111111111 1111224579988753
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
... ..+..+.+.|+|+|.+++.
T Consensus 219 -----~g~----~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 219 -----VGD----KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp -----SCH----HHHHHHHHTEEEEEEEEEC
T ss_pred -----CCc----HHHHHHHHHHhcCCEEEEE
Confidence 221 2678888999999998875
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=89.16 E-value=0.23 Score=44.18 Aligned_cols=96 Identities=14% Similarity=0.065 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcCC--ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C--CCCC
Q psy11741 105 TCSTKNILEIGCG--VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P--PFAP 178 (352)
Q Consensus 105 ~~~~~~vLD~GcG--~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~--~~~~ 178 (352)
..++.+||-+|+| .|..+..+++. .|++|+++|.++.-++.+++.-. .. . .|..+.... . ....
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~lga----~~-~--~~~~~~~~~~~~~~~~~~ 211 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQI---LNFRLIAVTRNNKHTEELLRLGA----AY-V--IDTSTAPLYETVMELTNG 211 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHH---HTCEEEEEESSSTTHHHHHHHTC----SE-E--EETTTSCHHHHHHHHTTT
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHhCCC----cE-E--EeCCcccHHHHHHHHhCC
Confidence 3458899999987 56677777776 56799999999988888876421 11 1 122211100 0 0113
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
..+|+|+....- .. +....+.|+|||.+++.-
T Consensus 212 ~g~Dvvid~~g~-----~~----~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 212 IGADAAIDSIGG-----PD----GNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp SCEEEEEESSCH-----HH----HHHHHHTEEEEEEEEECC
T ss_pred CCCcEEEECCCC-----hh----HHHHHHHhcCCCEEEEEe
Confidence 479999864321 11 223347899999988753
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=89.11 E-value=1.3 Score=36.72 Aligned_cols=101 Identities=7% Similarity=-0.006 Sum_probs=64.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|+=+|| |..+..+++.+...+. |+++|.++..++.+. ..+.++.+|..+...-....-...|.|++.
T Consensus 9 ~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (234)
T 2aef_A 9 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR-------SGANFVHGDPTRVSDLEKANVRGARAVIVD 78 (234)
T ss_dssp -CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-------TTCEEEESCTTCHHHHHHTTCTTCSEEEEC
T ss_pred CCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-------cCCeEEEcCCCCHHHHHhcCcchhcEEEEc
Confidence 567888887 6788888888765678 999999998776665 126788898874310000112467888764
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
. +.+.....+....+.+.|+..++....+..
T Consensus 79 ~-----~~d~~n~~~~~~a~~~~~~~~iia~~~~~~ 109 (234)
T 2aef_A 79 L-----ESDSETIHCILGIRKIDESVRIIAEAERYE 109 (234)
T ss_dssp C-----SCHHHHHHHHHHHHHHCSSSEEEEECSSGG
T ss_pred C-----CCcHHHHHHHHHHHHHCCCCeEEEEECCHh
Confidence 2 223334445556677788777777554433
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=89.01 E-value=2 Score=37.15 Aligned_cols=111 Identities=15% Similarity=0.145 Sum_probs=66.1
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCC--HHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFS--ENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----AP 178 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~ 178 (352)
.++++|=.|++.| ++..+++.+...|++|+.++.+ ....+...+.....+.++.++.+|+.+...-.. + .-
T Consensus 48 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 126 (294)
T 3r3s_A 48 KDRKALVTGGDSG-IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL 126 (294)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3678888887654 5566666554478899999886 334444444444445678888999875310000 0 01
Q ss_pred CcceEEEehhhhhc-------cChhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 179 ESLDIVLLIFVLDA-------INPNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 179 ~~fD~V~~~~~l~~-------~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
+..|+++.+..... ++.+++. .+++.+...++.+|.++..
T Consensus 127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i 184 (294)
T 3r3s_A 127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT 184 (294)
T ss_dssp TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence 46899887654321 2333333 3445566777788887765
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=88.94 E-value=1.2 Score=37.97 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=66.0
Q ss_pred CCeEEEEcC-CccccHHHHHhhcCCCCeEEEEEeCCHHH-HHHHHhccccCCCceEEEEecCCCCCCCCC-CC-----CC
Q psy11741 108 TKNILEIGC-GVGNSVFPIVEHCKNDNVFVYGCDFSENA-VNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FA-----PE 179 (352)
Q Consensus 108 ~~~vLD~Gc-G~G~~~~~l~~~~~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~-----~~ 179 (352)
++++|=.|+ |+|.++..+++.+...|++|+.+|.++.. ++...+.. +.++.++.+|+.+...-.. +. -+
T Consensus 7 ~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 83 (269)
T 2h7i_A 7 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL---PAKAPLLELDVQNEEHLASLAGRVTEAIG 83 (269)
T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS---SSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc---CCCceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 678898898 47777888777765578899999988753 34333322 3457788999875320000 00 02
Q ss_pred ---cceEEEehhhhhc-----------cChhHHHH-----------HHHHHHHhcCCCEEEEEEe
Q psy11741 180 ---SLDIVLLIFVLDA-----------INPNKMQH-----------VINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ---~fD~V~~~~~l~~-----------~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~ 219 (352)
.+|+++.+..+.. .+.+++.. +.+.+.+.++++|.++...
T Consensus 84 ~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (269)
T 2h7i_A 84 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD 148 (269)
T ss_dssp TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence 7899887654321 23344433 3445556666678777653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=88.74 E-value=2.1 Score=37.52 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=56.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCe--EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNV--FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
..+|.=||+|. ++..++..+...|. +|+++|.++..++.+.+.- . +.-...|..+ . .-...|+|+
T Consensus 33 ~~kI~IIG~G~--mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G----~-~~~~~~~~~~----~--~~~~aDvVi 99 (314)
T 3ggo_A 33 MQNVLIVGVGF--MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----I-IDEGTTSIAK----V--EDFSPDFVM 99 (314)
T ss_dssp CSEEEEESCSH--HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----S-CSEEESCTTG----G--GGGCCSEEE
T ss_pred CCEEEEEeeCH--HHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC----C-cchhcCCHHH----H--hhccCCEEE
Confidence 36888898764 44444444432566 8999999998888776531 1 1111222211 0 023578888
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
.. +++.....+++++...++||.+++-
T Consensus 100 la-----vp~~~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 100 LS-----SPVRTFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp EC-----SCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred Ee-----CCHHHHHHHHHHHhhccCCCcEEEE
Confidence 64 3445667788999999999876543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=88.72 E-value=0.4 Score=43.08 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=59.7
Q ss_pred CCCeEEEEc--CCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC-CCCCCcc
Q psy11741 107 STKNILEIG--CGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP-PFAPESL 181 (352)
Q Consensus 107 ~~~~vLD~G--cG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~-~~~~~~f 181 (352)
++.+||-.| .|.|..+..+++. .|++|+++|.++..++.+++.- .. .. .|..+... .+ ....+.+
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~---~Ga~Vi~~~~~~~~~~~~~~~G----a~-~~--~~~~~~~~~~~~~~~~~~g~ 232 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKK---AKCHVIGTCSSDEKSAFLKSLG----CD-RP--INYKTEPVGTVLKQEYPEGV 232 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHTT----CS-EE--EETTTSCHHHHHHHHCTTCE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHcC----Cc-EE--EecCChhHHHHHHHhcCCCC
Confidence 478999999 4567777777776 5679999999998888887631 11 11 12221100 00 0012468
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
|+|+.... . ..++.+.+.|+++|.+++.
T Consensus 233 D~vid~~g-----~----~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 233 DVVYESVG-----G----AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp EEEEECSC-----T----HHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECCC-----H----HHHHHHHHHHhcCCEEEEE
Confidence 99986432 1 3577788999999988874
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.26 E-value=0.64 Score=40.97 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=55.7
Q ss_pred eEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCC--CCCCCCCCCcceEEE
Q psy11741 110 NILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE--DWNPPFAPESLDIVL 185 (352)
Q Consensus 110 ~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~fD~V~ 185 (352)
+||-.|+ |.|..+..+++. .|++|++++.++.-++.+++.-. . . .+ |..+. ........+.+|+|+
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~---~Ga~vi~~~~~~~~~~~~~~lGa---~-~-~i--~~~~~~~~~~~~~~~~~~d~vi 221 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAK---RGYTVEASTGKAAEHDYLRVLGA---K-E-VL--AREDVMAERIRPLDKQRWAAAV 221 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHH---TTCCEEEEESCTTCHHHHHHTTC---S-E-EE--ECC---------CCSCCEEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHcCC---c-E-EE--ecCCcHHHHHHHhcCCcccEEE
Confidence 7999997 556777777776 56789999999888888765321 1 1 11 11110 000111234699987
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
-...- ..+..+.+.|++||.+++.
T Consensus 222 d~~g~---------~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 222 DPVGG---------RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp ECSTT---------TTHHHHHHTEEEEEEEEEC
T ss_pred ECCcH---------HHHHHHHHhhccCCEEEEE
Confidence 64321 1366778899999998874
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=88.13 E-value=2.9 Score=36.07 Aligned_cols=111 Identities=17% Similarity=0.134 Sum_probs=65.8
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
++++|=.|+++ +.++..+++.+...|++|+.+|.++...+.+.+..... ..+.++.+|+.+...-.. + .-+.
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 108 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL-GVKLTVPCDVSDAESVDNMFKVLAEEWGS 108 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH-TCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 67889888764 34555555555447889999999876555444333222 236788999885320000 0 0146
Q ss_pred ceEEEehhhhh----------ccChhHHH-----------HHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLD----------AINPNKMQ-----------HVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~----------~~~~~~~~-----------~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+++.+..+. ..+.+++. .+++.+...++.+|.++...
T Consensus 109 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 109 LDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp CSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred CCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 89988865432 22333333 33455666777788877653
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=88.12 E-value=4.3 Score=34.28 Aligned_cols=110 Identities=16% Similarity=0.128 Sum_probs=65.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH---HHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE---NAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----AP 178 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~---~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~ 178 (352)
++++|=.|+++| ++..+++.+...|++|+.++.+. ..++...+.....+.++.++.+|+.+...-.. + .-
T Consensus 11 ~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 89 (262)
T 3ksu_A 11 NKVIVIAGGIKN-LGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEF 89 (262)
T ss_dssp TCEEEEETCSSH-HHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 678888887655 66777777765889999987643 34444444443445678899999985320000 0 01
Q ss_pred CcceEEEehhhhh------ccChhHHHH-----------HHHHHHHhcCCCEEEEEE
Q psy11741 179 ESLDIVLLIFVLD------AINPNKMQH-----------VINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 179 ~~fD~V~~~~~l~------~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~ 218 (352)
+..|+++.+..+. ..+.+++.. +++.+...|+++|.++..
T Consensus 90 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 146 (262)
T 3ksu_A 90 GKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITI 146 (262)
T ss_dssp CSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEE
Confidence 4689988765432 223333332 334455556677877764
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=88.11 E-value=0.44 Score=42.18 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=59.7
Q ss_pred CCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C--CCCCCc
Q psy11741 107 STKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P--PFAPES 180 (352)
Q Consensus 107 ~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~--~~~~~~ 180 (352)
++.+||-.|+ |.|..+..+++. .|++|+++|.++.-++.+++.- .. . ..|..+.... . ......
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~~g----a~-~--~~~~~~~~~~~~~~~~~~~~g 217 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKM---KGAHTIAVASTDEKLKIAKEYG----AE-Y--LINASKEDILRQVLKFTNGKG 217 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHTT----CS-E--EEETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHcC----Cc-E--EEeCCCchHHHHHHHHhCCCC
Confidence 4889999994 456666667765 6779999999999888887642 11 1 1222211000 0 011346
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+|+....- ..+..+.+.|+|||.+++.-
T Consensus 218 ~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 218 VDASFDSVGK---------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp EEEEEECCGG---------GGHHHHHHHEEEEEEEEECC
T ss_pred ceEEEECCCh---------HHHHHHHHHhccCCEEEEEc
Confidence 9999864331 24667788999999988753
|
| >1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U | Back alignment and structure |
|---|
Probab=87.99 E-value=1.5 Score=44.23 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=86.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.++||+|.|.-.=.+.|.. +...|+.+|+-|.+ +..........|++.|.....+.. ...+|.|.|.
T Consensus 822 ~~~~lDlGTGPE~RiLsLiP----~~~pvtm~D~RP~a-----e~~~~w~~~T~f~~~DyL~~~~~~---~~~~D~vt~i 889 (1289)
T 1ej6_A 822 GDVVLDLGTGPEAKILELIP----ATSPVTCVDIRPTA-----QPSGCWNVRTTFLELDYLSDGWIT---GVRGDIVTCM 889 (1289)
T ss_dssp TCCEEEESCCSSCGGGGTSC----TTSCEEEEESSCCC-----SCSTTBSSCEEEEESCTTSSSCGG---GCCCSEEEEC
T ss_pred cceEEEccCCCcceeeeecC----CCCceEEecccCch-----hhhccccccceeeEccccccceee---cCCCcEEEEE
Confidence 78999999988765555544 77789999998742 111112355899999998765433 3578999998
Q ss_pred hhhhcc---ChhHHHHHHHHHHHhcCCCE--EEEEEeCCCCchh-hHhhhcCccccCceee-cCCCeeeeccCHHHHHHH
Q psy11741 188 FVLDAI---NPNKMQHVINQVYKYLKPGG--MVLFRDYGRYDLV-QLRFKKGRCLQDNFYA-RGDGTLVYFFTREEVKTM 260 (352)
Q Consensus 188 ~~l~~~---~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 260 (352)
++|... ..-++...++++.+.+++.| .+++....+-+.. .++-........+-|. .+.+....+.+.+.+.++
T Consensus 890 ~SLGAA~A~a~~tl~~~~~q~l~~~~~~~~~~l~lQlNcpL~s~~~vr~~LeId~~~~~Y~F~~~~R~EPY~~~~~l~~a 969 (1289)
T 1ej6_A 890 LSLGAAAAGKSMTFDAAFQQLIKVLSKSTANVVLVQVNCPTDVVRSIKGYLEIDSTNKRYRFPKFGRDEPYSDMDALEKI 969 (1289)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHHHHHTSCCSEEEEECCCCSSSCCCBTTTBEEETTTTEEEETTTTEEEECCCHHHHHHH
T ss_pred eechhhhhccCCcHHHHHHHHHHHHHhcCccEEEEEecCCCCCCCCCCCeEEEecccceEEcCCCCcCCCCCCHHHHHHH
Confidence 776543 12356778888888887766 4555433222110 0000000011112222 344555667788888887
Q ss_pred HHh
Q psy11741 261 FES 263 (352)
Q Consensus 261 l~~ 263 (352)
+++
T Consensus 970 i~~ 972 (1289)
T 1ej6_A 970 CRT 972 (1289)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.94 E-value=0.44 Score=42.01 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=58.6
Q ss_pred CCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C--CCCCCc
Q psy11741 107 STKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P--PFAPES 180 (352)
Q Consensus 107 ~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~--~~~~~~ 180 (352)
++.+||-.|+ |.|..+..+++. .|++|+++|.++..++.+++.- ... ..|..+.... + ......
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~---~G~~V~~~~~~~~~~~~~~~~g----~~~---~~~~~~~~~~~~~~~~~~~~~ 209 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKA---LGAKLIGTVGTAQKAQSALKAG----AWQ---VINYREEDLVERLKEITGGKK 209 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHHHT----CSE---EEETTTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHcC----CCE---EEECCCccHHHHHHHHhCCCC
Confidence 4789999994 455566666655 5679999999998888876531 111 1233321100 0 011236
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+|+.+.. ...++.+.++|++||.+++..
T Consensus 210 ~D~vi~~~g---------~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 210 VRVVYDSVG---------RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp EEEEEECSC---------GGGHHHHHHTEEEEEEEEECC
T ss_pred ceEEEECCc---------hHHHHHHHHHhcCCCEEEEEe
Confidence 999986543 124677788999999988753
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=87.91 E-value=0.97 Score=38.38 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=57.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC------CCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP------FAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~f 181 (352)
++.+|=-|.+.| +...+++.+...|++|+.+|.+++.++.+.+.+...+.++.++.+|+.+...-.. ..-+..
T Consensus 7 gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i 85 (254)
T 4fn4_A 7 NKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI 85 (254)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 778888887776 4555555554488999999999998888877776667789999999986321000 011578
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 86 DiLVNNAG 93 (254)
T 4fn4_A 86 DVLCNNAG 93 (254)
T ss_dssp CEEEECCC
T ss_pred CEEEECCc
Confidence 99887553
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=87.48 E-value=0.54 Score=42.29 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+||=+|+|. |..+..+++. .|++|+++|.++.-++.+++... .. .. .|..+.. .+....+.+|+|+
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~---~Ga~Vi~~~~~~~~~~~~~~~lG---a~-~v--~~~~~~~-~~~~~~~~~D~vi 256 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKA---FGSKVTVISTSPSKKEEALKNFG---AD-SF--LVSRDQE-QMQAAAGTLDGII 256 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHTSC---CS-EE--EETTCHH-HHHHTTTCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHhcC---Cc-eE--EeccCHH-HHHHhhCCCCEEE
Confidence 478999999753 5555666665 56799999999988877764332 11 11 1222100 0000013699998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
....... .++...++|+++|.++...
T Consensus 257 d~~g~~~--------~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 257 DTVSAVH--------PLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp ECCSSCC--------CSHHHHHHEEEEEEEEECC
T ss_pred ECCCcHH--------HHHHHHHHHhcCCEEEEEc
Confidence 6433211 2345667899999988743
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=87.41 E-value=0.28 Score=43.77 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=58.5
Q ss_pred CCCeEEEEc-CC-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC-CC-CCCCCcce
Q psy11741 107 STKNILEIG-CG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW-NP-PFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~G-cG-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~-~~~~~~fD 182 (352)
++.+||=+| +| .|..+..+++. .|++|+++|.++.-++.+++.-. . .. .|..+... .+ ....+.+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~---~Ga~Vi~~~~~~~~~~~~~~lGa---~--~v--i~~~~~~~~~~~~~~~~g~D 219 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKA---YGLRVITTASRNETIEWTKKMGA---D--IV--LNHKESLLNQFKTQGIELVD 219 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHH---TTCEEEEECCSHHHHHHHHHHTC---S--EE--ECTTSCHHHHHHHHTCCCEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHhcCC---c--EE--EECCccHHHHHHHhCCCCcc
Confidence 378999884 43 46667777775 67799999999998888877421 1 11 12111000 00 01234699
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|+.... -...+..+.++|+++|.++..
T Consensus 220 vv~d~~g--------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 220 YVFCTFN--------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEEESSC--------HHHHHHHHHHHEEEEEEEEES
T ss_pred EEEECCC--------chHHHHHHHHHhccCCEEEEE
Confidence 9886321 134567788899999998763
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=87.16 E-value=2.3 Score=37.85 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=58.5
Q ss_pred CC--CeEEEEcC--CccccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C-CCCC
Q psy11741 107 ST--KNILEIGC--GVGNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P-PFAP 178 (352)
Q Consensus 107 ~~--~~vLD~Gc--G~G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~-~~~~ 178 (352)
++ .+||-.|+ |.|..+..+++. .|+ +|+++|.++..++.+++... .. ...|..+.... + ....
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~---~Ga~~Vi~~~~~~~~~~~~~~~~g---~~---~~~d~~~~~~~~~~~~~~~ 228 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHF---LGCSRVVGICGTHEKCILLTSELG---FD---AAINYKKDNVAEQLRESCP 228 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHH---TTCSEEEEEESCHHHHHHHHHTSC---CS---EEEETTTSCHHHHHHHHCT
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHH---CCCCeEEEEeCCHHHHHHHHHHcC---Cc---eEEecCchHHHHHHHHhcC
Confidence 46 89999998 445555555554 677 99999999988887765321 11 12243321100 0 0011
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+.+|+|+.+.. ...+..+.++|++||.+++.
T Consensus 229 ~~~d~vi~~~G---------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 229 AGVDVYFDNVG---------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp TCEEEEEESCC---------HHHHHHHHHTEEEEEEEEEC
T ss_pred CCCCEEEECCC---------HHHHHHHHHHhccCcEEEEE
Confidence 26899886432 14577788999999998874
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=87.09 E-value=0.45 Score=42.33 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=58.1
Q ss_pred CCCCeEEEEcCCccc-cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC-----CCCCCCC
Q psy11741 106 CSTKNILEIGCGVGN-SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW-----NPPFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~-~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~~ 179 (352)
.++.+||=+|+|++. .+..+++.. .+.+|+++|.++.-++.+++.... . . .|..+... .. ....
T Consensus 162 ~~g~~VlV~GaG~~g~~a~~~a~~~--~g~~Vi~~~~~~~r~~~~~~~Ga~----~-~--i~~~~~~~~~~v~~~-t~g~ 231 (348)
T 4eez_A 162 KPGDWQVIFGAGGLGNLAIQYAKNV--FGAKVIAVDINQDKLNLAKKIGAD----V-T--INSGDVNPVDEIKKI-TGGL 231 (348)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT--SCCEEEEEESCHHHHHHHHHTTCS----E-E--EEC-CCCHHHHHHHH-TTSS
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHh--CCCEEEEEECcHHHhhhhhhcCCe----E-E--EeCCCCCHHHHhhhh-cCCC
Confidence 348899999998753 445555544 578999999999988888765321 1 1 12211100 00 1123
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+|.++.... . ...+....+.|+++|.+++.-
T Consensus 232 g~d~~~~~~~----~----~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 232 GVQSAIVCAV----A----RIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp CEEEEEECCS----C----HHHHHHHHHTEEEEEEEEECC
T ss_pred CceEEEEecc----C----cchhheeheeecCCceEEEEe
Confidence 4666654321 1 245677788999999988753
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=87.04 E-value=1.3 Score=33.19 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=54.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC-CCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP-PFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~fD~V~~ 186 (352)
..+|+=+|| |..+..+++.+...+.+|+++|.++..++.+++. ......+|..+.. .+ ...-..+|+|+.
T Consensus 6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~------~~~~~~~d~~~~~-~l~~~~~~~~d~vi~ 76 (144)
T 2hmt_A 6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY------ATHAVIANATEEN-ELLSLGIRNFEYVIV 76 (144)
T ss_dssp CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTT------CSEEEECCTTCHH-HHHTTTGGGCSEEEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh------CCEEEEeCCCCHH-HHHhcCCCCCCEEEE
Confidence 457998987 6677777666543677899999998765543321 2345666765311 01 011246898886
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.... +.+....+....+.+.+. .++..
T Consensus 77 ~~~~----~~~~~~~~~~~~~~~~~~-~ii~~ 103 (144)
T 2hmt_A 77 AIGA----NIQASTLTTLLLKELDIP-NIWVK 103 (144)
T ss_dssp CCCS----CHHHHHHHHHHHHHTTCS-EEEEE
T ss_pred CCCC----chHHHHHHHHHHHHcCCC-eEEEE
Confidence 4321 112222344445556675 55543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=86.86 E-value=0.37 Score=42.55 Aligned_cols=95 Identities=16% Similarity=0.026 Sum_probs=60.1
Q ss_pred CCCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C--CCCCC
Q psy11741 106 CSTKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P--PFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~--~~~~~ 179 (352)
.++.+||-.|+ |.|..+..+++. .|++|+++|.++.-++.+++.-. . . ..|..+.... + .....
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~~Ga----~-~--~~~~~~~~~~~~~~~~~~~~ 208 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKA---LGAKLIGTVSSPEKAAHAKALGA----W-E--TIDYSHEDVAKRVLELTDGK 208 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHHHTC----S-E--EEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHcCC----C-E--EEeCCCccHHHHHHHHhCCC
Confidence 34889999983 456677777776 56799999999998888876421 1 1 1222211000 0 01134
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+|+|+....- ..+..+.+.|++||.+++.-
T Consensus 209 g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 209 KCPVVYDGVGQ---------DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp CEEEEEESSCG---------GGHHHHHTTEEEEEEEEECC
T ss_pred CceEEEECCCh---------HHHHHHHHHhcCCCEEEEEe
Confidence 69999864321 24566788999999988853
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=86.74 E-value=0.5 Score=42.43 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=55.9
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCH---HHHHHHHhccccCCCceEEEEecCCCCCCCCCC--CCCcc
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSE---NAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF--APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~---~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~~f 181 (352)
+.+||-+|+|. |..+..+++. .|++|+++|.++ .-++.+++.- ...+ | .+ ...... ..+.+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~---~Ga~Vi~~~~~~~~~~~~~~~~~~g------a~~v--~-~~-~~~~~~~~~~~~~ 247 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRT---YGLEVWMANRREPTEVEQTVIEETK------TNYY--N-SS-NGYDKLKDSVGKF 247 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHH---HTCEEEEEESSCCCHHHHHHHHHHT------CEEE--E-CT-TCSHHHHHHHCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHh---CCCEEEEEeCCccchHHHHHHHHhC------Ccee--c-hH-HHHHHHHHhCCCC
Confidence 78999999832 4455555554 566999999998 7777776531 1222 3 22 110000 01469
Q ss_pred eEEEehhhhhccChhHHHHHH-HHHHHhcCCCEEEEEEe
Q psy11741 182 DIVLLIFVLDAINPNKMQHVI-NQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~ 219 (352)
|+|+...... ..+ +.+.+.|+++|.+++..
T Consensus 248 d~vid~~g~~--------~~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 248 DVIIDATGAD--------VNILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp EEEEECCCCC--------THHHHHHGGGEEEEEEEEECS
T ss_pred CEEEECCCCh--------HHHHHHHHHHHhcCCEEEEEe
Confidence 9998643311 134 77889999999988753
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=86.73 E-value=9.3 Score=39.01 Aligned_cols=53 Identities=11% Similarity=0.197 Sum_probs=40.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCe--EEEEEeCCHHHHHHHHhccccCCCceEEEEecC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNV--FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDV 167 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~ 167 (352)
...+++|+-||.|.++.-+.. .|. .+.++|+++.+.+.-+.|.. +..++..|+
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~----AG~~~vv~avEid~~A~~ty~~N~p----~~~~~~~DI 593 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQ----AGISDTLWAIEMWDPAAQAFRLNNP----GSTVFTEDC 593 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHH----HTSEEEEEEECSSHHHHHHHHHHCT----TSEEECSCH
T ss_pred CCCeEEEeccCccHHHHHHHH----CCCCceEEEEECCHHHHHHHHHhCC----CCccccccH
Confidence 356899999999999998877 453 57899999999988887753 334555554
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=86.72 E-value=2.7 Score=37.43 Aligned_cols=95 Identities=11% Similarity=0.071 Sum_probs=58.5
Q ss_pred CCCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC--CCCCC
Q psy11741 106 CSTKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP--PFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~--~~~~~ 179 (352)
.++.+||-.|+ |.|..+..+++. .|++|+++|.++..++.+++.- .. ...|..+... .+ .....
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~~g----~~---~~~~~~~~~~~~~~~~~~~~~ 230 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRM---AGAIPLVTAGSQKKLQMAEKLG----AA---AGFNYKKEDFSEATLKFTKGA 230 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHT----CS---EEEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHcC----Cc---EEEecCChHHHHHHHHHhcCC
Confidence 34789999984 455566666665 6779999999999888885431 11 1123322110 00 01124
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+|+|+.+..- . .+....+.|++||.+++..
T Consensus 231 ~~d~vi~~~G~-----~----~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 231 GVNLILDCIGG-----S----YWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp CEEEEEESSCG-----G----GHHHHHHHEEEEEEEEECC
T ss_pred CceEEEECCCc-----h----HHHHHHHhccCCCEEEEEe
Confidence 69999865431 1 3566778899999988753
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=86.72 E-value=0.3 Score=43.51 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=59.7
Q ss_pred CCCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCC-CCC-C-CCCCc
Q psy11741 106 CSTKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSED-WNP-P-FAPES 180 (352)
Q Consensus 106 ~~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~~~-~-~~~~~ 180 (352)
.++.+||-.|+ |.|..+..+++. .|++|++++.++.-++.+++.-. . ..+ |..... ... . .....
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~~ga----~-~v~--~~~~~~~~~v~~~~~~~g 227 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKG---MGAKVIAVVNRTAATEFVKSVGA----D-IVL--PLEEGWAKAVREATGGAG 227 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHTC----S-EEE--ESSTTHHHHHHHHTTTSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHhcCC----c-EEe--cCchhHHHHHHHHhCCCC
Confidence 34889999997 456677777776 67799999999988888876421 1 111 211100 000 0 11236
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+|+....- ..+..+.+.|++||.+++.-
T Consensus 228 ~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 228 VDMVVDPIGG---------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp EEEEEESCC-----------CHHHHHHTEEEEEEEEEC-
T ss_pred ceEEEECCch---------hHHHHHHHhhcCCCEEEEEE
Confidence 9999864331 14667788999999988753
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.69 E-value=6.5 Score=33.37 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=65.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCC-HHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFS-ENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
++++|=.|++.| ++..+++.+...|++|+.++.+ ...++...+.....+.++.++.+|+.+...-.. + .-+.
T Consensus 31 gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 109 (271)
T 3v2g_A 31 GKTAFVTGGSRG-IGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGG 109 (271)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 678888887665 4555555554478899988654 344444444444445678899999985320000 0 0136
Q ss_pred ceEEEehhhhh------ccChhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLD------AINPNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~------~~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
.|+++.+..+. ..+.+++. .+++.+.+.++++|.++..
T Consensus 110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i 164 (271)
T 3v2g_A 110 LDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI 164 (271)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 89988865432 22333333 3455667778888877765
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=86.58 E-value=2.6 Score=35.90 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=63.1
Q ss_pred CCeEEEEcCC-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 108 TKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 108 ~~~vLD~GcG-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
+++||=.|++ +|.++..+++.+...|++|+.++.++..-+.+.+..... ..+.++.+|+.+...-.. + .-+.
T Consensus 6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 84 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQEL-NSPYVYELDVSKEEHFKSLYNSVKKDLGS 84 (275)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHT-TCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 6788888886 366777777777557899999998875111111111111 236788899875310000 0 0146
Q ss_pred ceEEEehhhhh----------ccChhHHHH-----------HHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLD----------AINPNKMQH-----------VINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~----------~~~~~~~~~-----------~l~~~~~~LkpgG~l~~~~ 219 (352)
.|+++.+..+. ..+.+++.. +++.+.+.++++|.++...
T Consensus 85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 144 (275)
T 2pd4_A 85 LDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS 144 (275)
T ss_dssp EEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 89988865432 223333332 3344555565577777643
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.46 E-value=4.1 Score=34.41 Aligned_cols=82 Identities=20% Similarity=0.085 Sum_probs=50.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCC-C-----CCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPP-F-----APE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~-~-----~~~ 179 (352)
+++||=.|++. .++..+++.+...|++|++++.++..++.+.+.... .+.++.++.+|+.+...-.. + .-+
T Consensus 7 ~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (267)
T 2gdz_A 7 GKVALVTGAAQ-GIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 85 (267)
T ss_dssp TCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCC-cHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 56788888654 455666655544788999999998766554433322 12457888999875310000 0 013
Q ss_pred cceEEEehhhh
Q psy11741 180 SLDIVLLIFVL 190 (352)
Q Consensus 180 ~fD~V~~~~~l 190 (352)
..|+++.+...
T Consensus 86 ~id~lv~~Ag~ 96 (267)
T 2gdz_A 86 RLDILVNNAGV 96 (267)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 57998876643
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=86.41 E-value=0.65 Score=40.98 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=56.4
Q ss_pred eEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 110 NILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 110 ~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+||-.|+ |.|..+..+++. .|++|++++.++.-++.+++.-. . ..+-..+.... .......+.+|+|+-.
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~---~Ga~vi~~~~~~~~~~~~~~lGa---~-~v~~~~~~~~~-~~~~~~~~~~d~vid~ 224 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNK---RGYDVVASTGNREAADYLKQLGA---S-EVISREDVYDG-TLKALSKQQWQGAVDP 224 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHH---HTCCEEEEESSSSTHHHHHHHTC---S-EEEEHHHHCSS-CCCSSCCCCEEEEEES
T ss_pred eEEEECCCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHcCC---c-EEEECCCchHH-HHHHhhcCCccEEEEC
Confidence 7999997 456677777776 45689999999887787765321 1 11111111000 0011223469998754
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.. . ..+....+.|++||.+++.
T Consensus 225 ~g-----~----~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 225 VG-----G----KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp CC-----T----HHHHHHHTTEEEEEEEEEC
T ss_pred Cc-----H----HHHHHHHHhhcCCCEEEEE
Confidence 22 1 2467788899999998875
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=86.23 E-value=1 Score=39.68 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=58.9
Q ss_pred CCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C--CCCCCc
Q psy11741 107 STKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P--PFAPES 180 (352)
Q Consensus 107 ~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~--~~~~~~ 180 (352)
++.+||-.|+ |.|..+..+++. .|++|+++|.++..++.+++.- ... ..|..+.... + ......
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~---~G~~Vi~~~~~~~~~~~~~~~g----~~~---~~d~~~~~~~~~i~~~~~~~~ 214 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARH---LGATVIGTVSTEEKAETARKLG----CHH---TINYSTQDFAEVVREITGGKG 214 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHT----CSE---EEETTTSCHHHHHHHHHTTCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHcC----CCE---EEECCCHHHHHHHHHHhCCCC
Confidence 4789999995 556666666665 6679999999998888876531 111 1233321100 0 001236
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+|+.+..- ..++.+.+.|++||.+++..
T Consensus 215 ~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 215 VDVVYDSIGK---------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp EEEEEECSCT---------TTHHHHHHTEEEEEEEEECC
T ss_pred CeEEEECCcH---------HHHHHHHHhhccCCEEEEEe
Confidence 8999864321 34677788999999987753
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=86.19 E-value=1.5 Score=35.70 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=56.9
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+||=.|+ +|.++..+++.+...+.+|++++-++..+.... .++.++.+|+.+... . .-..+|+|+....
T Consensus 2 kvlVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-------~~~~~~~~D~~d~~~-~--~~~~~d~vi~~ag 70 (221)
T 3ew7_A 2 KIGIIGA-TGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-------KDINILQKDIFDLTL-S--DLSDQNVVVDAYG 70 (221)
T ss_dssp EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-------SSSEEEECCGGGCCH-H--HHTTCSEEEECCC
T ss_pred eEEEEcC-CchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-------CCCeEEeccccChhh-h--hhcCCCEEEECCc
Confidence 5666654 566666666665447889999999886554332 457899999986432 1 1245899887654
Q ss_pred hhccChhHHHHHHHHHHHhcCC--CEEEEEE
Q psy11741 190 LDAINPNKMQHVINQVYKYLKP--GGMVLFR 218 (352)
Q Consensus 190 l~~~~~~~~~~~l~~~~~~Lkp--gG~l~~~ 218 (352)
...-...........+.+.++. .+.+++.
T Consensus 71 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~ 101 (221)
T 3ew7_A 71 ISPDEAEKHVTSLDHLISVLNGTVSPRLLVV 101 (221)
T ss_dssp SSTTTTTSHHHHHHHHHHHHCSCCSSEEEEE
T ss_pred CCccccchHHHHHHHHHHHHHhcCCceEEEE
Confidence 4221112223334445555543 3455543
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.12 E-value=0.37 Score=43.08 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=59.7
Q ss_pred CCCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C-CCCCCc
Q psy11741 106 CSTKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P-PFAPES 180 (352)
Q Consensus 106 ~~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~-~~~~~~ 180 (352)
.++.+||-.|+ |.|..+..+++. .|++|+++|.++..++.+++.-. . . ..|..+.... + ....+.
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~~lGa----~-~--~~~~~~~~~~~~~~~~~~~g 235 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARA---FGAEVYATAGSTGKCEACERLGA----K-R--GINYRSEDFAAVIKAETGQG 235 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHTC----S-E--EEETTTSCHHHHHHHHHSSC
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHhcCC----C-E--EEeCCchHHHHHHHHHhCCC
Confidence 35789999853 456677777775 67799999999999888876421 1 1 1232221100 0 000346
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+|+....- + .+....+.|+++|.+++..
T Consensus 236 ~Dvvid~~g~-----~----~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 236 VDIILDMIGA-----A----YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEEEEESCCG-----G----GHHHHHHTEEEEEEEEECC
T ss_pred ceEEEECCCH-----H----HHHHHHHHhccCCEEEEEE
Confidence 9999864331 1 4566788999999988753
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=85.96 E-value=0.59 Score=39.90 Aligned_cols=97 Identities=11% Similarity=0.071 Sum_probs=51.8
Q ss_pred cCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEE-EecCCCCCCCCCCCCCcceEEEehhh--
Q psy11741 115 GCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAF-VCDVTSEDWNPPFAPESLDIVLLIFV-- 189 (352)
Q Consensus 115 GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~-~~d~~~~~~~~~~~~~~fD~V~~~~~-- 189 (352)
.++.|.....+.+. +|..|..||..- ..-.++... .-+...+. .+|+..+. ..+++|+|++...
T Consensus 149 ~~~~~~~~~~~~k~---~g~~vl~v~~~~---~~p~k~v~wi~Pi~GAt~~~~lDfg~p~-----~~~k~DvV~SDMApn 217 (320)
T 2hwk_A 149 EHPQSDFSSFVSKL---KGRTVLVVGEKL---SVPGKMVDWLSDRPEATFRARLDLGIPG-----DVPKYDIIFVNVRTP 217 (320)
T ss_dssp CCCCCCCHHHHHTS---SCSEEEEEESCC---CCTTSEEEEEESSTTCSEECCGGGCSCT-----TSCCEEEEEEECCCC
T ss_pred ccCCCCHHHHHhhC---CCcEEEEEeccc---ccCCceeEeeccCCCceeecccccCCcc-----ccCcCCEEEEcCCCC
Confidence 35556665555443 677777765211 111111111 01223444 56665422 2367999999432
Q ss_pred --hhccC----h-hHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 190 --LDAIN----P-NKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 190 --l~~~~----~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
-||.. . .-+..++..+..+|+|||.+++-.++.
T Consensus 218 ~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygg 257 (320)
T 2hwk_A 218 YKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGY 257 (320)
T ss_dssp CCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCC
T ss_pred CCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecC
Confidence 23310 0 122235677789999999999987654
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=85.95 E-value=0.48 Score=42.44 Aligned_cols=94 Identities=16% Similarity=0.067 Sum_probs=55.8
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+||-+|+|. |..+..+++. .|++|+++|.++.-++.+++.+.. .. .+ |..+.. ......+.+|+|+
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~---~Ga~Vi~~~~~~~~~~~~~~~lGa--~~--vi--~~~~~~-~~~~~~~g~D~vi 249 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKA---MGHHVTVISSSNKKREEALQDLGA--DD--YV--IGSDQA-KMSELADSLDYVI 249 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---HTCEEEEEESSTTHHHHHHTTSCC--SC--EE--ETTCHH-HHHHSTTTEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEeCChHHHHHHHHHcCC--ce--ee--ccccHH-HHHHhcCCCCEEE
Confidence 478999999753 5566666665 456899999999888877733321 11 11 111100 0000013689998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
-...-. ..+....++|+|||.++..
T Consensus 250 d~~g~~--------~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 250 DTVPVH--------HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp ECCCSC--------CCSHHHHTTEEEEEEEEEC
T ss_pred ECCCCh--------HHHHHHHHHhccCCEEEEe
Confidence 643211 1244566789999998875
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=85.61 E-value=0.43 Score=44.47 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=51.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.++|+=+|| |..+..+++.+...+..|+.+|.++..++.+...+ .+..+.+|.++...-....-...|++++
T Consensus 3 ~M~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-----~~~~i~Gd~~~~~~L~~Agi~~ad~~ia 74 (461)
T 4g65_A 3 AMKIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-----DLRVVNGHASHPDVLHEAGAQDADMLVA 74 (461)
T ss_dssp CEEEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-----SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred cCEEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-----CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence 467777666 56888888888667899999999999998876653 3678899988532100111256888876
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=85.60 E-value=1.5 Score=38.69 Aligned_cols=101 Identities=6% Similarity=-0.038 Sum_probs=65.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|+=+|+ |..+..+++.+...+. ++++|.+++.++ ++. ..+.++.+|..+...-....-...|.|++.
T Consensus 115 ~~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~------~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~ 184 (336)
T 1lnq_A 115 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR------SGANFVHGDPTRVSDLEKANVRGARAVIVD 184 (336)
T ss_dssp -CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH------TTCEEEESCTTSHHHHHHTCSTTEEEEEEC
T ss_pred cCCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh------CCcEEEEeCCCCHHHHHhcChhhccEEEEc
Confidence 357887776 6788888888765778 999999999887 553 236789999875321001123568888764
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
. +.+..........+.+.|...++.......
T Consensus 185 ~-----~~d~~n~~~~~~ar~~~~~~~iiar~~~~~ 215 (336)
T 1lnq_A 185 L-----ESDSETIHCILGIRKIDESVRIIAEAERYE 215 (336)
T ss_dssp C-----SSHHHHHHHHHHHHTTCTTSEEEEECSSGG
T ss_pred C-----CccHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 2 223333444556677788877777654433
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.38 E-value=1.6 Score=36.59 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=55.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCC------CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF------APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~~f 181 (352)
+++||=.|++.| ++..+++.+...|++|+.+|.++..++...+.....+.++.++.+|+.+...-... .-+..
T Consensus 9 ~k~vlITGas~g-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 87 (253)
T 3qiv_A 9 NKVGIVTGSGGG-IGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGI 87 (253)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 678888887654 55666665544788999999999888777666555556788999999853200000 01368
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+..+
T Consensus 88 d~li~~Ag~ 96 (253)
T 3qiv_A 88 DYLVNNAAI 96 (253)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCc
Confidence 998886543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.31 E-value=1.1 Score=39.76 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=58.1
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC-----CCCCCCC
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW-----NPPFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~~ 179 (352)
.++.+||=.|+|. |..+..+++.. ....++++|.++.-++.+++.-.. .. .|..+... .+ -...
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~--G~~~vi~~~~~~~k~~~a~~lGa~-----~~--i~~~~~~~~~~~~~~-~~~~ 228 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDISSEKLALAKSFGAM-----QT--FNSSEMSAPQMQSVL-RELR 228 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTTCS-----EE--EETTTSCHHHHHHHH-GGGC
T ss_pred CCCCEEEEECCCCcchHHHHHHHHc--CCcEEEEEechHHHHHHHHHcCCe-----EE--EeCCCCCHHHHHHhh-cccC
Confidence 3488999999875 34556666653 334678999999999988775211 11 12221100 00 0124
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+|+|+.... -...++...++|++||.+++.-
T Consensus 229 g~d~v~d~~G--------~~~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 229 FNQLILETAG--------VPQTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp SSEEEEECSC--------SHHHHHHHHHHCCTTCEEEECC
T ss_pred Cccccccccc--------ccchhhhhhheecCCeEEEEEe
Confidence 5787765321 1245667788999999988754
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=84.67 E-value=1.1 Score=37.82 Aligned_cols=81 Identities=16% Similarity=0.090 Sum_probs=55.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
++++|=.|+++| ++..+++.+...|++|+++|.++..++.+.+.+...+.++.++.+|+.+...- .... +..
T Consensus 7 ~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-g~i 84 (252)
T 3h7a_A 7 NATVAVIGAGDY-IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH-APL 84 (252)
T ss_dssp SCEEEEECCSSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-SCE
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh-CCc
Confidence 677888887765 55566555544788999999998877776666555566789999999853210 0001 478
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+..+
T Consensus 85 d~lv~nAg~ 93 (252)
T 3h7a_A 85 EVTIFNVGA 93 (252)
T ss_dssp EEEEECCCC
T ss_pred eEEEECCCc
Confidence 998876543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.58 E-value=2.2 Score=36.06 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=54.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC------CCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP------FAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~~~f 181 (352)
++++|=.|++.| ++..+++.+...|++|+.+|.++..++.+.+.....+.++.++.+|+.+...-.. ..-+..
T Consensus 11 ~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 89 (264)
T 3ucx_A 11 DKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRV 89 (264)
T ss_dssp TCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCC
T ss_pred CcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 678888887665 4555555554378899999999988877766655556778999999986320000 001468
Q ss_pred eEEEehh
Q psy11741 182 DIVLLIF 188 (352)
Q Consensus 182 D~V~~~~ 188 (352)
|+++.+.
T Consensus 90 d~lv~nA 96 (264)
T 3ucx_A 90 DVVINNA 96 (264)
T ss_dssp SEEEECC
T ss_pred cEEEECC
Confidence 9988765
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=84.22 E-value=4.6 Score=33.84 Aligned_cols=78 Identities=14% Similarity=-0.057 Sum_probs=49.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
+++||=.|++. .++..+++.+...|++|+.++.++..++...+.. +.++.++.+|+.+...-.. + .-+..
T Consensus 5 ~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (254)
T 1hdc_A 5 GKTVIITGGAR-GLGAEAARQAVAAGARVVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CSEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCceeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 67788888654 4556666555447889999999987666554433 2457888899875310000 0 01368
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 81 D~lv~nAg 88 (254)
T 1hdc_A 81 DGLVNNAG 88 (254)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 99887654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=84.09 E-value=2.8 Score=35.47 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=47.4
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCH---HHHHHHHhccccCCCceEEEEecCCCCCCC------CCCC
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSE---NAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFA 177 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~---~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~ 177 (352)
+++||=.|+++ |.++..+++.+...|++|+.++.++ ..++..... . ....++.+|+.+...- ....
T Consensus 9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~---~-~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ---L-GSDIVLQCDVAEDASIDTMFAELGKV 84 (265)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHH---T-TCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHh---c-CCcEEEEccCCCHHHHHHHHHHHHHH
Confidence 66788888752 6677777776644788999999876 222222221 1 2246788898753200 0001
Q ss_pred CCcceEEEehhhh
Q psy11741 178 PESLDIVLLIFVL 190 (352)
Q Consensus 178 ~~~fD~V~~~~~l 190 (352)
-+..|+++.+..+
T Consensus 85 ~g~iD~lv~~Ag~ 97 (265)
T 1qsg_A 85 WPKFDGFVHSIGF 97 (265)
T ss_dssp CSSEEEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 2468998886643
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=84.01 E-value=1.9 Score=36.41 Aligned_cols=81 Identities=14% Similarity=0.031 Sum_probs=54.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|++. .++..+++.+...|++|+.+|.++..++.+.+.....+.++.++.+|+.+...-.. + .-+..
T Consensus 6 ~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 84 (257)
T 3imf_A 6 EKVVIITGGSS-GMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRI 84 (257)
T ss_dssp TCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 66788777655 45566666554478899999999988887776665555678999999985320000 0 01468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 85 d~lv~nAg 92 (257)
T 3imf_A 85 DILINNAA 92 (257)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 99887654
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=83.91 E-value=4 Score=37.21 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=49.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHH---HHHHHHhccc---------cCCCceEEEEecCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSEN---AVNILKEHEE---------YKPDRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~---~l~~a~~~~~---------~~~~~v~~~~~d~~~~~~~~~ 175 (352)
+++||=.|+ +|.++..+++.+...+.+|++++-++. .++...+.+. ....++.++.+|+.+.. .+.
T Consensus 69 ~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~-~l~ 146 (427)
T 4f6c_A 69 LGNTLLTGA-TGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD-DVV 146 (427)
T ss_dssp CEEEEEECT-TSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C-CCC
T ss_pred CCEEEEecC-CcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcc-cCC
Confidence 557787764 677888888777657889999988776 3333222211 11256899999998632 222
Q ss_pred CCCCcceEEEehhh
Q psy11741 176 FAPESLDIVLLIFV 189 (352)
Q Consensus 176 ~~~~~fD~V~~~~~ 189 (352)
....+|+|+....
T Consensus 147 -~~~~~d~Vih~A~ 159 (427)
T 4f6c_A 147 -LPENMDTIIHAGA 159 (427)
T ss_dssp -CSSCCSEEEECCC
T ss_pred -CcCCCCEEEECCc
Confidence 3467899987654
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.89 E-value=3.2 Score=35.24 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=64.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEE-eCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGC-DFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gv-D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
++++|=.|+++| ++..+++.+...|++|+.+ ..++...+...+.....+.++.++.+|+.+...-.. + .-+.
T Consensus 27 ~k~~lVTGas~G-IG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 105 (267)
T 3u5t_A 27 NKVAIVTGASRG-IGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFGG 105 (267)
T ss_dssp CCEEEEESCSSH-HHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 677888887665 4555555543367888877 445555555544444445678899999985320000 0 0146
Q ss_pred ceEEEehhhhhc------cChhHHH-----------HHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDA------INPNKMQ-----------HVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~------~~~~~~~-----------~~l~~~~~~LkpgG~l~~~~ 219 (352)
.|+++.+..+.. .+.+++. .+++.+.+.++++|.++...
T Consensus 106 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 106 VDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 899888654322 2233333 34556667777788877653
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.81 E-value=2 Score=36.55 Aligned_cols=82 Identities=11% Similarity=0.005 Sum_probs=53.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
+++||=.|++ |.++..+++.+...|.+|+++|.++..++...+.....+.++.++.+|+.+...-.. + .-+.+
T Consensus 31 ~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 109 (272)
T 1yb1_A 31 GEIVLITGAG-HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV 109 (272)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence 6788888765 456667766664478899999999877766555444444578899999875310000 0 01368
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+|+.+...
T Consensus 110 D~li~~Ag~ 118 (272)
T 1yb1_A 110 SILVNNAGV 118 (272)
T ss_dssp SEEEECCCC
T ss_pred cEEEECCCc
Confidence 998876543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=83.73 E-value=2 Score=35.84 Aligned_cols=81 Identities=19% Similarity=0.093 Sum_probs=52.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CC-----CCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FA-----PESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~-----~~~f 181 (352)
+++||=.| |+|.++..+++.+...|.+|+++|.++..++...+.....+.++.++.+|+.+...-.. +. .+.+
T Consensus 11 ~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 89 (255)
T 1fmc_A 11 GKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV 89 (255)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 56777666 45667777777765578899999999877665544443334568888999875310000 00 1368
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+.+..
T Consensus 90 d~vi~~Ag 97 (255)
T 1fmc_A 90 DILVNNAG 97 (255)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 98887554
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=83.63 E-value=2.5 Score=34.92 Aligned_cols=73 Identities=19% Similarity=0.145 Sum_probs=49.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCce-EEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRC-HAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+++||=.|+ +|.++..+++.+...|.+|++++-++..++.... .++ .++.+|+. . .+...-+.+|+|+.
T Consensus 21 ~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~------~~~~~~~~~Dl~-~--~~~~~~~~~D~vi~ 90 (236)
T 3e8x_A 21 GMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE------RGASDIVVANLE-E--DFSHAFASIDAVVF 90 (236)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH------TTCSEEEECCTT-S--CCGGGGTTCSEEEE
T ss_pred CCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh------CCCceEEEcccH-H--HHHHHHcCCCEEEE
Confidence 778888775 5566666666654478899999998876554432 247 88999987 2 22211246899987
Q ss_pred hhhh
Q psy11741 187 IFVL 190 (352)
Q Consensus 187 ~~~l 190 (352)
....
T Consensus 91 ~ag~ 94 (236)
T 3e8x_A 91 AAGS 94 (236)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=83.63 E-value=1.6 Score=36.99 Aligned_cols=82 Identities=10% Similarity=0.005 Sum_probs=55.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
+++||=.|++. .++..+++.+...|++|++++.++..++...+.....+.++.++.+|+.+...-.. + ..+..
T Consensus 29 ~k~vlITGas~-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 107 (262)
T 3rkr_A 29 GQVAVVTGASR-GIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRC 107 (262)
T ss_dssp TCEEEESSTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 67788777654 46666666554478899999999988877766655555678899999975320000 0 01468
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+..+
T Consensus 108 d~lv~~Ag~ 116 (262)
T 3rkr_A 108 DVLVNNAGV 116 (262)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 998876544
|
| >3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A | Back alignment and structure |
|---|
Probab=83.50 E-value=2.2 Score=43.47 Aligned_cols=151 Identities=12% Similarity=0.070 Sum_probs=90.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCc-eEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDR-CHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+..+||+|.|.-.=.+.+.. +..-|+.+|.-|.+- ........ ..|++.|.....+.. ...+|.+.|
T Consensus 828 ~~~~lDLGTGPEcRiLsliP----~~~pvtmvD~RP~ae-----~~~~w~~~~T~yi~~DYl~~~~~~---~~~~d~vta 895 (1299)
T 3iyl_W 828 LAHLLDLGTGPECRILSLIP----PTLQVTMSDSRPCAE-----LMASFDPALTAYVQGDYSTAAFWN---GIRCDSATA 895 (1299)
T ss_dssp GCSEEEETCCSSCSGGGSSC----TTSCEEEEESSCCSS-----CGGGBCTTTEEEEESCSSSGGGGS---SCCCSEEEE
T ss_pred CCEEEEcCCCccceeeecCC----CCCceEEEecCCccc-----cccccccccceeEEeccccceeEe---cCCCCEEEE
Confidence 57899999988655444444 777899999977421 11112345 789999998654322 467899999
Q ss_pred hhhhhcc---ChhHHHHHHHHHHHhcCCCE--EEEEEeCCCCchhh-HhhhcCccccC-ceeecCCCeeeeccCHHHHHH
Q psy11741 187 IFVLDAI---NPNKMQHVINQVYKYLKPGG--MVLFRDYGRYDLVQ-LRFKKGRCLQD-NFYARGDGTLVYFFTREEVKT 259 (352)
Q Consensus 187 ~~~l~~~---~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 259 (352)
.++|... ..-++...++++.+.+++.| .+++....+-.... .+-........ .+.....+....+.+.+++.+
T Consensus 896 ilSLGAA~a~a~~tl~~~l~~~l~~~~~~~v~~l~lQLN~Pl~~~~~~r~~LeId~~~~~Y~F~~~gR~EPY~~~~~~~~ 975 (1299)
T 3iyl_W 896 IFTIGAAAAAAGTDLIAFVQQLIPRIVAAGGTRMWLQLNTPLYEVSSLPDLIEIDLRDHVYRFNGGERVEPYADPVPLQQ 975 (1299)
T ss_dssp TTTHHHHHHHTTCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCSCCBTTTEEEETTTTEEEETTTTBCCBCCCHHHHHH
T ss_pred eeechhhhhhCCCcHHHHHHHHHHHHHhcCceEEEEEecCCCCCCCCCCceEEEecccceEEcCCCCcCCCCCCHHHHHH
Confidence 8776543 22467788888888888766 46654322211100 00000001111 222334455666788999988
Q ss_pred HHHhCCCceEEe
Q psy11741 260 MFESAGFVEKQN 271 (352)
Q Consensus 260 ll~~~Gf~~~~~ 271 (352)
++++. |.....
T Consensus 976 ~i~~~-~P~a~~ 986 (1299)
T 3iyl_W 976 AIAAL-LPAAAL 986 (1299)
T ss_dssp HHHHH-SSSSEE
T ss_pred HHHHh-CCCceE
Confidence 88775 544433
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.39 E-value=6.9 Score=33.15 Aligned_cols=61 Identities=25% Similarity=0.234 Sum_probs=43.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 169 (352)
++++|=.|++. .++..+++.+...|++|++++.++..++.+.+.....+.++.++.+|+.+
T Consensus 21 ~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 81 (273)
T 1ae1_A 21 GTTALVTGGSK-GIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS 81 (273)
T ss_dssp TCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCEEEEECCcc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC
Confidence 67788888654 45666666554478899999999877766544443334568888899875
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.29 E-value=1.8 Score=36.13 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=54.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC------CCCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW------NPPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~f 181 (352)
++++|=.|++ |.++..+++.+...|.+|++++.++..++...+.....+.++.++.+|+.+... ......+..
T Consensus 5 ~k~vlITGas-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (247)
T 3lyl_A 5 EKVALVTGAS-RGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI 83 (247)
T ss_dssp TCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5677877765 445666666554478899999999988877766655556678999999985320 000012468
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+..+
T Consensus 84 d~li~~Ag~ 92 (247)
T 3lyl_A 84 DILVNNAGI 92 (247)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 998876543
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=83.26 E-value=2.2 Score=35.79 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=52.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-CC-----CCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-FA-----PESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~~-----~~~f 181 (352)
+++||=.|++ |.++..+++.+...|.+|+++|.++..++...+.....+.++.++.+|+.+...-.. +. .+.+
T Consensus 13 ~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 91 (260)
T 3awd_A 13 NRVAIVTGGA-QNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRV 91 (260)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 6778877765 556666666654478899999999876665544443334568899999875320000 00 1368
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+|+.+..
T Consensus 92 d~vi~~Ag 99 (260)
T 3awd_A 92 DILVACAG 99 (260)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 99887654
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=83.06 E-value=3.4 Score=38.18 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=60.3
Q ss_pred CCCCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC---------
Q psy11741 105 TCSTKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--------- 173 (352)
Q Consensus 105 ~~~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--------- 173 (352)
..++.+||=+|+ |.|..+..+++. .|+++++++.++.-++.+++.-. . .. .|..+....
T Consensus 226 ~~~g~~VlV~GasG~vG~~avqlak~---~Ga~vi~~~~~~~~~~~~~~lGa----~-~v--i~~~~~d~~~~~~~~~~~ 295 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALA---GGANPICVVSSPQKAEICRAMGA----E-AI--IDRNAEGYRFWKDENTQD 295 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHTC----C-EE--EETTTTTCCSEEETTEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHH---cCCeEEEEECCHHHHHHHHhhCC----c-EE--EecCcCcccccccccccc
Confidence 345889999997 446677777776 67799999999998888876421 0 11 122111000
Q ss_pred ----------C-C-CCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 174 ----------P-P-FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 174 ----------~-~-~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+ . .....+|+|+-... . ..+....++|++||.+++.
T Consensus 296 ~~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~--~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 296 PKEWKRFGKRIRELTGGEDIDIVFEHPG-------R--ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEECSC-------H--HHHHHHHHHEEEEEEEEES
T ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEcCC-------c--hhHHHHHHHhhCCcEEEEE
Confidence 0 0 01247998875321 1 3567778899999998874
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=83.06 E-value=2.2 Score=37.00 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=55.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCC------CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF------APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~~f 181 (352)
+++||=.|+++| ++..+++.+...|++|++++.++..++.+.+.+...+.++.++.+|+.+...-... ..+..
T Consensus 31 gk~vlVTGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 109 (301)
T 3tjr_A 31 GRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGV 109 (301)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence 678888888755 55555555544788999999999888877666555556789999999853200000 01368
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+..+
T Consensus 110 d~lvnnAg~ 118 (301)
T 3tjr_A 110 DVVFSNAGI 118 (301)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 998886543
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=82.96 E-value=6.4 Score=33.55 Aligned_cols=81 Identities=15% Similarity=0.070 Sum_probs=47.9
Q ss_pred CCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 108 TKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
+++||=.|+++ |.++..+++.+...|++|++++.++..-+.+.+..... .++.++.+|+.+...-.. + .-+.
T Consensus 21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 99 (285)
T 2p91_A 21 GKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGF-GSDLVVKCDVSLDEDIKNLKKFLEENWGS 99 (285)
T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT-TCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 67888888763 66777777666447889999998875212222111111 236788899875310000 0 0146
Q ss_pred ceEEEehhh
Q psy11741 181 LDIVLLIFV 189 (352)
Q Consensus 181 fD~V~~~~~ 189 (352)
+|+++.+..
T Consensus 100 iD~lv~~Ag 108 (285)
T 2p91_A 100 LDIIVHSIA 108 (285)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899888654
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=82.82 E-value=2.2 Score=36.47 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=54.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|++.| ++..+++.+...|++|++++.++..++.+.+.+...+.++.++.+|+.+...-.. + .-+..
T Consensus 24 ~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 102 (279)
T 3sju_A 24 PQTAFVTGVSSG-IGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPI 102 (279)
T ss_dssp -CEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 678888887655 5555555554478899999999988777766655556678999999985320000 0 01468
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+..+
T Consensus 103 d~lv~nAg~ 111 (279)
T 3sju_A 103 GILVNSAGR 111 (279)
T ss_dssp CEEEECCCC
T ss_pred cEEEECCCC
Confidence 998876543
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=82.71 E-value=7.3 Score=33.37 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=43.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEe-CCHHHHHHHHhccc-cCCCceEEEEecCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCD-FSENAVNILKEHEE-YKPDRCHAFVCDVTSE 170 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD-~s~~~l~~a~~~~~-~~~~~v~~~~~d~~~~ 170 (352)
++++|=.|++. .++..+++.+...|++|+.++ .++..++.+.+.+. ..+.++.++.+|+.+.
T Consensus 9 ~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~ 72 (291)
T 1e7w_A 9 VPVALVTGAAK-RLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNV 72 (291)
T ss_dssp CCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSS
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCc
Confidence 56777777654 466666666544788999999 88877766554443 2345688999999864
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=82.57 E-value=2.3 Score=36.04 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEEE
Q psy11741 197 KMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 197 ~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.....+..+.++|+|||.+++.
T Consensus 52 ~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 52 FTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCeEEEEE
Confidence 4567888899999999999886
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=82.54 E-value=6.3 Score=33.15 Aligned_cols=79 Identities=13% Similarity=0.021 Sum_probs=50.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC-CCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN-PPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~~fD~V~~ 186 (352)
++.+|==|.++| +...+++.+...|++|+.+|.+.. +.+.+.....+.++.++.+|+.+.... .-+..+..|+++.
T Consensus 9 GKvalVTGas~G-IG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVN 85 (247)
T 4hp8_A 9 GRKALVTGANTG-LGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVN 85 (247)
T ss_dssp TCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEE
T ss_pred CCEEEEeCcCCH-HHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence 677777776665 555555555448899999998753 122222333456788999999875421 1234578999988
Q ss_pred hhh
Q psy11741 187 IFV 189 (352)
Q Consensus 187 ~~~ 189 (352)
+..
T Consensus 86 NAG 88 (247)
T 4hp8_A 86 NAG 88 (247)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.53 E-value=1.8 Score=36.88 Aligned_cols=82 Identities=16% Similarity=0.039 Sum_probs=54.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCC------CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPF------APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~~f 181 (352)
++++|=.|+++| ++..+++.+...|++|+.++.++..++.+.+.+...+.++.++.+|+.+...-... .-+..
T Consensus 4 ~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 82 (264)
T 3tfo_A 4 DKVILITGASGG-IGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI 82 (264)
T ss_dssp TCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 567787777654 55566655544788999999999888777666555556788899999853200000 01468
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+..+
T Consensus 83 D~lVnnAG~ 91 (264)
T 3tfo_A 83 DVLVNNAGV 91 (264)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 998876543
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.53 E-value=2.6 Score=36.19 Aligned_cols=82 Identities=20% Similarity=0.063 Sum_probs=55.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|++.| ++..+++.+...|++|+.+|.++..++.+.+.....+.++.++.+|+.+...-.. + .-+..
T Consensus 28 ~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 106 (283)
T 3v8b_A 28 SPVALITGAGSG-IGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHL 106 (283)
T ss_dssp CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 667888887655 5556665554478899999999988877766655555678899999985310000 0 01468
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+..+
T Consensus 107 D~lVnnAg~ 115 (283)
T 3v8b_A 107 DIVVANAGI 115 (283)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 998876543
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=81.57 E-value=11 Score=32.06 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=63.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHH-HHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENA-VNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~ 180 (352)
++++|=.|++ |.++..+++.+...|++|++++.++.. .+.+.+.....+.++.++.+|+.+...-.. + .-+.
T Consensus 29 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 107 (283)
T 1g0o_A 29 GKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK 107 (283)
T ss_dssp TCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5677777765 456666666664478899999887542 333333333334568888999875310000 0 0136
Q ss_pred ceEEEehhhhhc------cChhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDA------INPNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~------~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
.|+++.+..+.. .+.+++. .+++.+.+.|+.+|.++..
T Consensus 108 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 162 (283)
T 1g0o_A 108 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 162 (283)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEE
Confidence 899887654322 2233333 2345566667677877764
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=81.26 E-value=2.9 Score=35.65 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=48.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
.++||=.| . |.++..+++.+...+.+|++++-++.. ...++.++.+|+.+...-.....+.+|+|+..
T Consensus 3 ~~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~----------~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~ 70 (286)
T 3gpi_A 3 LSKILIAG-C-GDLGLELARRLTAQGHEVTGLRRSAQP----------MPAGVQTLIADVTRPDTLASIVHLRPEILVYC 70 (286)
T ss_dssp CCCEEEEC-C-SHHHHHHHHHHHHTTCCEEEEECTTSC----------CCTTCCEEECCTTCGGGCTTGGGGCCSEEEEC
T ss_pred CCcEEEEC-C-CHHHHHHHHHHHHCCCEEEEEeCCccc----------cccCCceEEccCCChHHHHHhhcCCCCEEEEe
Confidence 45788888 3 888888888775478899999876532 23568899999976431111123458998875
Q ss_pred hhh
Q psy11741 188 FVL 190 (352)
Q Consensus 188 ~~l 190 (352)
...
T Consensus 71 a~~ 73 (286)
T 3gpi_A 71 VAA 73 (286)
T ss_dssp HHH
T ss_pred CCC
Confidence 543
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=81.15 E-value=3 Score=34.82 Aligned_cols=81 Identities=15% Similarity=0.018 Sum_probs=52.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|++. .++..+++.+...|++|+.++.++..++...+.....+.++.++.+|+.+...-.. + .-+.+
T Consensus 7 ~k~~lVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 85 (247)
T 2jah_A 7 GKVALITGASS-GIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGL 85 (247)
T ss_dssp TCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 67788888664 45666666554478899999999887766555443334568889999875310000 0 01468
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 86 d~lv~nAg 93 (247)
T 2jah_A 86 DILVNNAG 93 (247)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 99887654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=81.15 E-value=3.9 Score=33.19 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=59.5
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+||=.|+ +|.++..+++.+...+.+|++++-++..+.... ..++.++.+|+.+... ..-+.+|+|+....
T Consensus 2 kilVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~------~~~~~~~~~D~~d~~~---~~~~~~d~vi~~ag 71 (224)
T 3h2s_A 2 KIAVLGA-TGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL------GATVATLVKEPLVLTE---ADLDSVDAVVDALS 71 (224)
T ss_dssp EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT------CTTSEEEECCGGGCCH---HHHTTCSEEEECCC
T ss_pred EEEEEcC-CCHHHHHHHHHHHHCCCEEEEEEeccccccccc------CCCceEEecccccccH---hhcccCCEEEECCc
Confidence 4666664 566777777666447889999999987654331 2458899999986432 11246899887664
Q ss_pred hhcc--ChhHHHHHHHHHHHhcCC-CEEEEEE
Q psy11741 190 LDAI--NPNKMQHVINQVYKYLKP-GGMVLFR 218 (352)
Q Consensus 190 l~~~--~~~~~~~~l~~~~~~Lkp-gG~l~~~ 218 (352)
..+- ...........+.+.++. |+.+++.
T Consensus 72 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~ 103 (224)
T 3h2s_A 72 VPWGSGRGYLHLDFATHLVSLLRNSDTLAVFI 103 (224)
T ss_dssp CCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred cCCCcchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence 4211 112223344555555544 4555554
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.03 E-value=0.45 Score=42.93 Aligned_cols=101 Identities=12% Similarity=0.126 Sum_probs=55.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|+=+|+ |..+..+++.+...|.+|+++|.++..++.+.+.. +..+ ..|..... .+...-..+|+|+.
T Consensus 165 ~~~~V~ViGa--G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g~~~---~~~~~~~~-~l~~~~~~~DvVi~ 235 (369)
T 2eez_A 165 APASVVILGG--GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---GGRV---ITLTATEA-NIKKSVQHADLLIG 235 (369)
T ss_dssp CCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TTSE---EEEECCHH-HHHHHHHHCSEEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---CceE---EEecCCHH-HHHHHHhCCCEEEE
Confidence 3689999998 45555555544336779999999998877765432 1122 12221100 00000135798876
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
....... ....-+.+.+.+.++|||.++..
T Consensus 236 ~~g~~~~--~~~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 236 AVLVPGA--KAPKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp CCC---------CCSCHHHHTTSCTTCEEEEC
T ss_pred CCCCCcc--ccchhHHHHHHHhhcCCCEEEEE
Confidence 4432210 11111245667788999987654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=80.79 E-value=4 Score=29.13 Aligned_cols=72 Identities=21% Similarity=0.115 Sum_probs=45.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCC-eEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDN-VFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+|+=+|+ |..+..++..+...+ .+|+++|.++..++.+.. ..+.+...|+.+.. .+...-..+|+|+.
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~------~~~~~~~~d~~~~~-~~~~~~~~~d~vi~ 75 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR------MGVATKQVDAKDEA-GLAKALGGFDAVIS 75 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT------TTCEEEECCTTCHH-HHHHHTTTCSEEEE
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh------CCCcEEEecCCCHH-HHHHHHcCCCEEEE
Confidence 568999998 656666665553366 899999999987766551 23566777775321 00000135788876
Q ss_pred hh
Q psy11741 187 IF 188 (352)
Q Consensus 187 ~~ 188 (352)
..
T Consensus 76 ~~ 77 (118)
T 3ic5_A 76 AA 77 (118)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=80.45 E-value=2.3 Score=35.81 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=54.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC-C-----CCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP-F-----APESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~-~-----~~~~f 181 (352)
++++|=.|++.| ++..+++.+...|++|+.+|.++..++...+.....+.++.++.+|+.+...-.. + .-+..
T Consensus 12 ~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 90 (256)
T 3gaf_A 12 DAVAIVTGAAAG-IGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKI 90 (256)
T ss_dssp TCEEEECSCSSH-HHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 677887777655 5555555554378899999999988777666555555678999999985320000 0 01368
Q ss_pred eEEEehhhh
Q psy11741 182 DIVLLIFVL 190 (352)
Q Consensus 182 D~V~~~~~l 190 (352)
|+++.+..+
T Consensus 91 d~lv~nAg~ 99 (256)
T 3gaf_A 91 TVLVNNAGG 99 (256)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 998876543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=80.04 E-value=8.7 Score=35.58 Aligned_cols=98 Identities=12% Similarity=0.164 Sum_probs=56.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc----------------CCCceEEEEecCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY----------------KPDRCHAFVCDVTSED 171 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~----------------~~~~v~~~~~d~~~~~ 171 (352)
-.+|.=||+|. ++..++..+...|..|+++|.++..++.+++.... ....... ..|..
T Consensus 37 ~~kV~VIGaG~--MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~--- 110 (463)
T 1zcj_A 37 VSSVGVLGLGT--MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTK--- 110 (463)
T ss_dssp CCEEEEECCSH--HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGG---
T ss_pred CCEEEEECcCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHH---
Confidence 45789999876 22333333322788999999999988877653210 0011121 22321
Q ss_pred CCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 172 WNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 172 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.-...|+|+..-. ..+ +-...+++++...++|+.+++..+
T Consensus 111 -----~~~~aDlVIeaVp-e~~--~~k~~v~~~l~~~~~~~~ii~snT 150 (463)
T 1zcj_A 111 -----ELSTVDLVVEAVF-EDM--NLKKKVFAELSALCKPGAFLCTNT 150 (463)
T ss_dssp -----GGTTCSEEEECCC-SCH--HHHHHHHHHHHHHSCTTCEEEECC
T ss_pred -----HHCCCCEEEEcCC-CCH--HHHHHHHHHHHhhCCCCeEEEeCC
Confidence 0235788886431 111 234678888989999987766533
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=80.04 E-value=5.6 Score=33.67 Aligned_cols=82 Identities=13% Similarity=-0.031 Sum_probs=51.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeC-CHHHHHHHHhccccC-CCceEEEEecCCCC----CCCCC-C----
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDF-SENAVNILKEHEEYK-PDRCHAFVCDVTSE----DWNPP-F---- 176 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~-s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~----~~~~~-~---- 176 (352)
++++|=.|++ |.++..+++.+...|++|+++|. ++..++.+.+..... +.++.++.+|+.+. ..-.. +
T Consensus 11 ~k~~lVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 89 (276)
T 1mxh_A 11 CPAAVITGGA-RRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF 89 (276)
T ss_dssp CCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence 5677766655 55667776666447889999999 877666554443322 45688899999853 10000 0
Q ss_pred -CCCcceEEEehhhh
Q psy11741 177 -APESLDIVLLIFVL 190 (352)
Q Consensus 177 -~~~~fD~V~~~~~l 190 (352)
.-+..|+++.+..+
T Consensus 90 ~~~g~id~lv~nAg~ 104 (276)
T 1mxh_A 90 RAFGRCDVLVNNASA 104 (276)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HhcCCCCEEEECCCC
Confidence 01368998886543
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=80.02 E-value=17 Score=36.17 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCC--CCe-EEEEEeCCHHHHHHHHhcc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKN--DNV-FVYGCDFSENAVNILKEHE 153 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~--~~~-~v~gvD~s~~~l~~a~~~~ 153 (352)
+..+|||+-||.|.++.-+..+... ... .+.++|+++.+++.-+.|.
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 3568999999999998888664210 112 4679999999999888775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 352 | ||||
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 2e-26 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 1e-18 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-13 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 4e-12 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-11 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 1e-10 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 4e-10 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 5e-08 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 6e-08 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 7e-08 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 1e-07 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 1e-07 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 3e-07 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 5e-07 | |
| d1af7a2 | 193 | c.66.1.8 (A:92-284) Chemotaxis receptor methyltran | 2e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 2e-06 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 3e-06 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 3e-06 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 3e-06 | |
| d1vlma_ | 208 | c.66.1.41 (A:) Possible histamine N-methyltransfer | 4e-06 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 7e-06 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 7e-06 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 1e-05 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 4e-05 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 5e-05 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 7e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 8e-05 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 9e-05 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 1e-04 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 1e-04 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 1e-04 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 4e-04 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 7e-04 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 8e-04 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 0.002 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 0.002 |
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 104 bits (259), Expect = 2e-26
Identities = 32/241 (13%), Positives = 62/241 (25%), Gaps = 61/241 (25%)
Query: 64 DVAKNWDAFYNVHQNRFFKDR---HWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGN 120
+ Y + W + + +++IG G
Sbjct: 14 EPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRT------LIDIGSGPT- 66
Query: 121 SVFPIVEHCKNDNVFVYGCDFSENAVNIL-----KEHEEYKPDRCHAFV----------- 164
V+ ++ C + + DF E L +E +
Sbjct: 67 -VYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQ 124
Query: 165 ---------------CDVTSED--WNPPFAPESLDIVLLIFVLDAI--NPNKMQHVINQV 205
DV AP D ++ F L+A+ + Q ++ +
Sbjct: 125 DKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHI 184
Query: 206 YKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265
L+PGG +L + + A V + EEV+ +G
Sbjct: 185 TTLLRPGGHLLLIGA--------------LEESWYLAGEARLTVVPVSEEEVREALVRSG 230
Query: 266 F 266
+
Sbjct: 231 Y 231
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.0 bits (201), Expect = 1e-18
Identities = 32/259 (12%), Positives = 69/259 (26%), Gaps = 61/259 (23%)
Query: 69 WDAFYNVHQNRFFKD--RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIV 126
+Y+ + + + + P +++IG G ++ ++
Sbjct: 17 LATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGL------QGDTLIDIGSGPT--IYQVL 68
Query: 127 EHCKNDNVFVYGCDFSENAVNILKEH-----EEYKPDRCHAFVC---------------- 165
C + + DF++ L++ Y F C
Sbjct: 69 AACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127
Query: 166 ----------DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKM--QHVINQVYKYLKPGG 213
DV + P D VL + ++ + + + + LKPGG
Sbjct: 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGG 187
Query: 214 MVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTL-VYFFTREEVKTMFESAGF-VEKQN 271
++ + Y G + EV+ AGF +E+
Sbjct: 188 HLVTTVTL---------------RLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLL 232
Query: 272 LIDRRLQVNRGKQIKMYRV 290
+ V + +
Sbjct: 233 HSPQSYSVTNAANNGVCCI 251
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 66.9 bits (162), Expect = 2e-13
Identities = 31/204 (15%), Positives = 67/204 (32%), Gaps = 16/204 (7%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
+L+IG G G++ + + G D ++ V + + K F
Sbjct: 20 VLDIGAGAGHTALAFSPYVQE----CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 75
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF 230
P ++ A + + ++ + +V + LK G L D+ + L
Sbjct: 76 LPFPDD-----SFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDE 130
Query: 231 KKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRV 290
++ D + V + E + MF + Q++ L + IK
Sbjct: 131 -----FVNHLNRLRDPSHVRESSLSEWQAMFSANQL-AYQDIQKWNLPIQYDSWIKRGGT 184
Query: 291 WIQAKSYFVHYL-FVTEEVKTMFE 313
+ + +L ++E + F
Sbjct: 185 PADREKQIITHLNHASDEARDTFC 208
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 62.7 bits (151), Expect = 4e-12
Identities = 26/194 (13%), Positives = 57/194 (29%), Gaps = 15/194 (7%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+ +L++ G G+ K V D +E+ + + + E + +V
Sbjct: 17 EEVLDVATGGGHVANAFAPFVKK----VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA 72
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
+ + + + +++ Y+ LK GG +L D +
Sbjct: 73 EQMPFTDERFHIVTCRIAAH-----HFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAF 127
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMY 288
+ D + + + + M E AGF E + L
Sbjct: 128 DV-----FYNYVEKERDYSHHRAWKKSDWLKMLEEAGF-ELEELHCFHKTFIFEDWCDRM 181
Query: 289 RVWIQAKSYFVHYL 302
V + K ++
Sbjct: 182 NVTTEKKQELSDFI 195
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.9 bits (149), Expect = 2e-11
Identities = 36/265 (13%), Positives = 80/265 (30%), Gaps = 31/265 (11%)
Query: 59 QTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGV 118
Q + + A+ W + ++R + + WL ++ +L++ CG
Sbjct: 20 QYADGEAARVWQLYIGDTRSRTAEYKAWLL----GLLRQHGC--------HRVLDVACGT 67
Query: 119 GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE-EYKPDRCHAFVCDVTSEDWNPPFA 177
G +VE + + A+ E D+ + + D + P
Sbjct: 68 GVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAG 127
Query: 178 PESLDIVLLIFVL-----DAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK 232
++ L + ++ + + + ++PGG +L D+ YD +
Sbjct: 128 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGG-LLVIDHRNYDYI------ 180
Query: 233 GRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWI 292
L G +++ T + +D +QV +
Sbjct: 181 ---LSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSK 237
Query: 293 QAKSYFVHYLFVTEEVKTMFESAGF 317
SY+ H L + + A
Sbjct: 238 FRLSYYPHCL---ASFTELVQEAFG 259
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 58.1 bits (139), Expect = 1e-10
Identities = 25/207 (12%), Positives = 60/207 (28%), Gaps = 20/207 (9%)
Query: 74 NVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDN 133
V +F +++ L ++++ L++GCG G + + + +
Sbjct: 2 TVRDENYFTEKYGLTRTHSDVLAAAKVVAP-----GRTLDLGCGNGRNSLYLAANGYDVT 56
Query: 134 VFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAI 193
+ + E D N D +L V+ +
Sbjct: 57 AWDKNPAS--------MANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL 108
Query: 194 NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFT 253
+ +I + + KPGG L + +G L ++
Sbjct: 109 EAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFK-------EGELRRYYE 161
Query: 254 REEVKTMFESAGFVEKQNLIDRRLQVN 280
++ E G + + + R+++
Sbjct: 162 GWDMLKYNEDVGELHRTDENGNRIKLR 188
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.2 bits (140), Expect = 4e-10
Identities = 28/216 (12%), Positives = 64/216 (29%), Gaps = 36/216 (16%)
Query: 33 WDEEQEQQARKLVE--NNSVLQIDKNLIQT-LNEDVAKNWDAFYNVHQ---NRFFKDRHW 86
+D + + N + +I + I L ++ R +
Sbjct: 125 FDNSDTKGFVNAINLYNKMIREIPRQRIIDHLETIDKIPRSFIHDFLHIVYTRSIHPQAN 184
Query: 87 ----------------LFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCK 130
L +++ + K DT +++G GVGN V C
Sbjct: 185 KLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDT-----FMDLGSGVGNCVVQAALECG 239
Query: 131 NDNVFVYGCDFSENAVNILKEHEEYKPDRCHAF-------VCDVTSEDWNPPFAPESLDI 183
+GC+ ++A ++ E RC + + + E +
Sbjct: 240 CALS--FGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQ 297
Query: 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219
+I V + + + + ++ + K G ++
Sbjct: 298 CDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK 333
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.1 bits (121), Expect = 5e-08
Identities = 29/211 (13%), Positives = 59/211 (27%), Gaps = 23/211 (10%)
Query: 66 AKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPI 125
+++ F N H + ++ + II + TK S IL IG G G I
Sbjct: 4 VESFRRFLN-HSTEHQCMQEFMDKKLPGIIGRIGDTK----SEIKILSIGGGAGEIDLQI 58
Query: 126 V----EHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS------EDWNPP 175
+ + + S + KE + +
Sbjct: 59 LSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118
Query: 176 FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRC 235
+ D + +I +L + + + + L +L +KK
Sbjct: 119 KELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKK--- 173
Query: 236 LQDNFYARGDGTLVYFFTREEVKTMFESAGF 266
L + T +++ M ++ G
Sbjct: 174 ---YGSRFPQDDLCQYITSDDLTQMLDNLGL 201
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 51.0 bits (121), Expect = 6e-08
Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 34/219 (15%)
Query: 70 DAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHC 129
D +YN F + W T+ +I++ GCG G ++
Sbjct: 7 DLYYNDDYVSFLVNTVWKITK-----------------PVHIVDYGCGYGYLGLVLMPLL 49
Query: 130 KNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189
G D E + +E P D + DI +
Sbjct: 50 PE-GSKYTGIDSGETLLAEARELFRLLPYDSEFLEG-----DATEIELNDKYDIAICHAF 103
Query: 190 LDAINPNKMQHVINQVYKYLKPGGMVLFRD---------YGRYDLVQLRFKKGRCLQDNF 240
L ++ + ++ ++ +K GG ++ + Y Q F + LQ F
Sbjct: 104 L--LHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLF 161
Query: 241 YARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQV 279
+ ++ G + + ++
Sbjct: 162 ESDTQRNGKDGNIGMKIPIYLSELGVKNIECRVSDKVNF 200
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 7e-08
Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 12/129 (9%)
Query: 93 EIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH 152
++I+ + T D +++G GVG V + + + G + ++ +
Sbjct: 142 QMIDEIKMTDDDL-----FVDLGSGVGQVVLQVAAATNCKHHY--GVEKADIPAKYAETM 194
Query: 153 EEYKPDRCHAFV-----CDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYK 207
+ + + D+ E + +IFV + ++ H + + +
Sbjct: 195 DREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFA 254
Query: 208 YLKPGGMVL 216
+K GG ++
Sbjct: 255 NMKEGGRIV 263
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 49.7 bits (118), Expect = 1e-07
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 8/113 (7%)
Query: 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169
+L +G G +V + + +Y ++S L E + +
Sbjct: 59 RVLYLGAASGTTVSHLADIVDEGI--IYAVEYSAKPFEKLLELVR-----ERNNIIPLLF 111
Query: 170 EDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGR 222
+ P ++ V LI+ D N+++ + +LK G V+ R
Sbjct: 112 DASKPWKYSGIVEKVDLIY-QDIAQKNQIEILKANAEFFLKEKGEVVIMVKAR 163
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 49.5 bits (117), Expect = 1e-07
Identities = 20/161 (12%), Positives = 48/161 (29%), Gaps = 16/161 (9%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
N+LE+G G+ + EH + + + SE A++ + + H+ D
Sbjct: 22 GNLLELGSFKGDFTSRLQEHFND----ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ 77
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLV-Q 227
+ + + + + +L GG + + Q
Sbjct: 78 LPRRYDNIVLTHVLEHI---------DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQ 128
Query: 228 LRFKKGRCLQDNFYARGDGTL--VYFFTREEVKTMFESAGF 266
+ K G ++ + + + ++ AG
Sbjct: 129 IAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 169
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 48.4 bits (114), Expect = 3e-07
Identities = 17/186 (9%), Positives = 50/186 (26%), Gaps = 26/186 (13%)
Query: 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVC 165
T L+ G G+G ++ + ++ + +
Sbjct: 92 HGTSRALDCGAGIGRITKNLLTKLYAT---TDLLEPVKHMLEE-----AKRELAGMPVGK 143
Query: 166 DVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL 225
+ + P + D++++ + + + L P G + F++
Sbjct: 144 FILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG- 202
Query: 226 VQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQI 285
+ D +L + K +F +G ++ Q +
Sbjct: 203 -----------DRFLVDKEDSSL--TRSDIHYKRLFNESGV----RVVKEAFQEEWPTDL 245
Query: 286 KMYRVW 291
+++
Sbjct: 246 FPLKMY 251
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 48.0 bits (113), Expect = 5e-07
Identities = 32/206 (15%), Positives = 56/206 (27%), Gaps = 20/206 (9%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
IL++G G G + + G D S K E +
Sbjct: 37 ILDLGSGSGEMLCTWARDH---GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA 93
Query: 171 DWNPPFAPESLDIVLLIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
+ D+ + + ++ Q LKPGG++L + L
Sbjct: 94 GYVANE---KCDVAACVGATWIAGGFAGAEELLAQS---LKPGGIMLIGEPYWRQLPATE 147
Query: 230 FKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF--VEKQNLIDRRLQVNRGKQIKM 287
+ A G + F T + F+ G+ VE +
Sbjct: 148 --------EIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYEAAKWLT 199
Query: 288 YRVWIQAKSYFVHYLFVTEEVKTMFE 313
R W++A V E+ +
Sbjct: 200 MRRWLEANPDDDFAAEVRAELNIAPK 225
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 45.6 bits (107), Expect = 2e-06
Identities = 22/174 (12%), Positives = 39/174 (22%), Gaps = 44/174 (25%)
Query: 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCK------ND 132
FF++ H F E + G + I
Sbjct: 4 AFFREAH-HFPILAEHARRRHGEY-------RVWSAAASTGEEPYSIAITLADALGMAPG 55
Query: 133 NVFVYGCDFSENAVNI-------LKEHEEYKPDRCHAFVCDVTSEDW------------- 172
V+ D + L E + P + + T
Sbjct: 56 RWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYV 115
Query: 173 ---------NPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
P D + V+ + + ++ + LKP G +LF
Sbjct: 116 EFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDG-LLF 168
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 46.1 bits (108), Expect = 2e-06
Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 21/151 (13%)
Query: 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYG 138
R F D I+ L D +L+IGCG G + + +G
Sbjct: 58 RAFLDAGHYQPLRDAIVAQLRERLDDKA--TAVLDIGCGEGYYTHAFADALPE--ITTFG 113
Query: 139 CDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKM 198
D S+ A+ + + PF+ S+D ++ I+
Sbjct: 114 LDVSKVAIKAAAKRYPQVTFCVASS--------HRLPFSDTSMDAIIRIYAP-------- 157
Query: 199 QHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
++ + +KPGG V+ G L++L+
Sbjct: 158 -CKAEELARVVKPGGWVITATPGPRHLMELK 187
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 45.4 bits (106), Expect = 3e-06
Identities = 30/209 (14%), Positives = 70/209 (33%), Gaps = 30/209 (14%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+ L++ CG GN + KN + D S+ ++ + + + D++
Sbjct: 39 DDYLDLACGTGNLTENLCPKFKNT----WAVDLSQEMLSEAENKFRSQGLKPRLACQDIS 94
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228
+ + N F L L I+ + ++ V +LK GG+ +F Y L Q+
Sbjct: 95 NLNINRKF---DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQV 151
Query: 229 RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMY 288
L +N + D + Y++ + D + + ++
Sbjct: 152 -------LGNNDFNYDDDEVFYYWENQ----------------FEDDLVSMYISFFVRDG 188
Query: 289 RVWIQAKSYFVHYLFVTEEVKTMFESAGF 317
+ + + E+++ +
Sbjct: 189 EFYKRFDEEHEERAYKEEDIEKYLKHGQL 217
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.5 bits (106), Expect = 3e-06
Identities = 24/155 (15%), Positives = 55/155 (35%), Gaps = 17/155 (10%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
+A+ +D Y R + ++ F E + + +L++ CG G
Sbjct: 6 TLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKR---------EVRRVLDLACGTGIPT 56
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
+ E V G D E + + + + + + DV + F
Sbjct: 57 LELAERGYE----VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA---- 108
Query: 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
+ + + + ++ + ++V + LKPGG+ +
Sbjct: 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 45.1 bits (105), Expect = 3e-06
Identities = 32/219 (14%), Positives = 70/219 (31%), Gaps = 26/219 (11%)
Query: 60 TLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVG 119
+E+VA+ + + + E + N+ ++GC G
Sbjct: 2 IFDENVAEVFPDMIQ-RSVPGYSNIITAIGMLAERFVT---------ADSNVYDLGCSRG 51
Query: 120 NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPE 179
+ + NV + G D S+ V ++H + A
Sbjct: 52 AATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNAS- 110
Query: 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDN 239
+V+L F L + P ++ ++Y+ L P G+++ + R++ ++
Sbjct: 111 ---MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQF 167
Query: 240 FYARGD------------GTLVYFFTREEVKTMFESAGF 266
A G ++ + E K ++ GF
Sbjct: 168 KRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGF 206
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Score = 45.1 bits (105), Expect = 4e-06
Identities = 30/204 (14%), Positives = 57/204 (27%), Gaps = 41/204 (20%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
E ++ ++ VH+ + + + E +EIG G G
Sbjct: 7 ERFVNEYERWFLVHRFAYLSELQAVKCLLPE---------------GRGVEIGVGTGRFA 51
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
P+ G + SE I ++ + +
Sbjct: 52 VPLKI--------KIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVT---- 99
Query: 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242
+ + + + Y+ LK GG ++ R + GR + N
Sbjct: 100 --------TICFVDDPERALKEAYRILKKGGYLIVGIVDRESFL------GREYEKNKEK 145
Query: 243 RGDGTLVYFFTREEVKTMFESAGF 266
FF+ EE+ + AGF
Sbjct: 146 SVFYKNARFFSTEELMDLMRKAGF 169
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 7e-06
Identities = 28/232 (12%), Positives = 58/232 (25%), Gaps = 48/232 (20%)
Query: 53 IDKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNIL 112
+ KN + TL E W + + F + + ++ K+ +
Sbjct: 2 VQKNQVLTLEE-----WQDKWVNGKTAF--HQEQGHQLLKKHLDTFLKGKSG----LRVF 50
Query: 113 EIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCD------ 166
CG ++ + V G + SE + +
Sbjct: 51 FPLCGKA----VEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFK 106
Query: 167 ---------VTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
S P D++ L AINP + + ++ L L
Sbjct: 107 SSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYL- 165
Query: 218 RDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEK 269
L L + + ++ E++ +F +
Sbjct: 166 -------LCVLSYDPTK----------HPGPPFYVPHAEIERLFGKICNIRC 200
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 43.7 bits (102), Expect = 7e-06
Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 11/119 (9%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
+++GCG G + VY D + A++ + + + + + + +
Sbjct: 37 AVDVGCGTGG----VTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTL--MEGD 90
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR 229
+DI ++ + Q ++ + LKPGG ++ +
Sbjct: 91 APEALCKIPDIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILLETKFEAM 144
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 28/156 (17%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
IL +G G + + + VY +++ + L + + + + +
Sbjct: 78 ILYLGASAGTTPSHVADIADKGI--VYAIEYAPRIMRELLDACAERENIIP-----ILGD 130
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRF 230
P ++ V +I+ A + +I +LK G
Sbjct: 131 ANKPQEYANIVEKVDVIYEDVAQPNQ-AEILIKNAKWFLKKG------------------ 171
Query: 231 KKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266
G + D T +E K + E+ GF
Sbjct: 172 --GYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGF 205
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 42.3 bits (98), Expect = 4e-05
Identities = 30/200 (15%), Positives = 61/200 (30%), Gaps = 15/200 (7%)
Query: 69 WDAFY-NVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVE 127
++ F L ++ + D + +++L++G G G I
Sbjct: 44 YEDLAGRPDLRASF---DSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAI-- 98
Query: 128 HCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187
+ +V + + ++ V E D ++L
Sbjct: 99 ARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKA-----DAIILS 153
Query: 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGT 247
FVL + ++ + + L+PGG +L + ++ L G
Sbjct: 154 FVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN-EQFTELDLRMLVFLGG- 211
Query: 248 LVYFFTREEVKTMFESAGFV 267
TRE+ + SAG V
Sbjct: 212 --ALRTREKWDGLAASAGLV 229
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 5e-05
Identities = 13/110 (11%), Positives = 37/110 (33%), Gaps = 4/110 (3%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
+LE+G G+ + + E ++ + + ++ L++ + +
Sbjct: 55 GRVLEVGFGMAIAASKVQEAPIDE---HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWE 111
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNK-MQHVINQVYKYLKPGGMVLF 217
P + + + + N ++ LKPGG++ +
Sbjct: 112 DVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (97), Expect = 7e-05
Identities = 34/215 (15%), Positives = 62/215 (28%), Gaps = 37/215 (17%)
Query: 29 DHVQ-WDEEQEQQARKLV--ENNSVLQIDKNLIQTLNEDVAKNWDAFYNVHQNRFFKDRH 85
+ + E E + +KL N +L + + + V K + + R
Sbjct: 7 ELILAETGEGETKFKKLFRLNNFGLLNSNWGAVP-FGKIVGKFPGQILRSSFGKQYMLRR 65
Query: 86 WLFTEFTE-------IIEPLSST----KTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNV 134
++ I P D +LE G G G + + +
Sbjct: 66 PALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGR 125
Query: 135 FVYGCDFSENAVNILKE------------HEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
V + ++ ++ K+ H E PD D+ + D
Sbjct: 126 -VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI--SGATEDIKSLTFD 182
Query: 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
LD +NP + Y +LK GG+
Sbjct: 183 ----AVALDMLNP---HVTLPVFYPHLKHGGVCAV 210
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 41.2 bits (96), Expect = 8e-05
Identities = 15/116 (12%), Positives = 36/116 (31%), Gaps = 11/116 (9%)
Query: 102 KTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCH 161
+ +ILE+G G GN I+ + + E+ + ++ D +
Sbjct: 80 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGT-LTVVERDEDNLKKAMDNLSEFYDIGN 138
Query: 162 AFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
D+ ++ + + + ++ +KPG + F
Sbjct: 139 VRTSRSDIADFISDQ----------MYDAVIADIPDPWNHVQKIASMMKPGSVATF 184
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.1 bits (96), Expect = 9e-05
Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 8/116 (6%)
Query: 102 KTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCH 161
+ D +LE G G G ++ V + + + + +
Sbjct: 91 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQ-VISYEQRADHAEHARRNVSGCYGQPP 149
Query: 162 AFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
V S+ + S+D VLD + P V++ V + L GG+++
Sbjct: 150 DNWRLVVSDLADSELPDGSVD----RAVLDMLAP---WEVLDAVSRLLVAGGVLMV 198
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 13/129 (10%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170
+E+G G G V + + +N ++ G D ++ ++ + +
Sbjct: 35 HVEVGSGKGAFVSGMAK--QNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWV-DGS 91
Query: 171 DWNPPFAPESLDIVLLIFVLDAINPNKMQH------VINQVYKYLKPGGMVLF----RDY 220
D F +D + L F + ++ + L G + F R
Sbjct: 92 DLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGL 151
Query: 221 GRYDLVQLR 229
Y LV
Sbjct: 152 FEYSLVSFS 160
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 40.1 bits (92), Expect = 1e-04
Identities = 12/124 (9%), Positives = 24/124 (19%), Gaps = 14/124 (11%)
Query: 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDR----------C 160
+L CG + + V G + SE AV +P
Sbjct: 24 VLVPLCGKSQDMSWLSGQG----YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAA 79
Query: 161 HAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220
+ A+ + + + + + L
Sbjct: 80 PGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 139
Query: 221 GRYD 224
Sbjct: 140 EYDQ 143
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (94), Expect = 1e-04
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 5/108 (4%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
K +L++GCG G +H V G D S + E +
Sbjct: 40 KIVLDVGCGTGILSMFAAKHGAKH---VIGVDMSSIIEMAKELVELNGFSDKITLLRGKL 96
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
+ P + + + + L + M V+ YL GG++
Sbjct: 97 EDVHLPFPKVDIIISEWMGYFLL--YESMMDTVLYARDHYLVEGGLIF 142
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 5/108 (4%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVT 168
K +L++GCG G K V G D SE + K + +
Sbjct: 37 KVVLDVGCGTGILSMFAA---KAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI 93
Query: 169 SEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216
E P + + + + L + + V+ KYL GG V
Sbjct: 94 EEVHLPVEKVDVIISEWMGYFLL--FESMLDSVLYAKNKYLAKGGSVY 139
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 38.4 bits (88), Expect = 7e-04
Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 29/191 (15%)
Query: 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEH-EEYKPDRCHAFVCDV 167
++L++GCG G + + YG D +E ++N + K F
Sbjct: 26 DSVLDLGCGKGGDLLKYE---RAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD 82
Query: 168 TSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQ 227
+ + F + + ++L+PGG + R +++
Sbjct: 83 SYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILE 142
Query: 228 LRFKKGRCLQDNFYARGDGT----------------------LVYFFTREEVKTMFESAG 265
R+K+GR D + + + YF + F+ G
Sbjct: 143 -RYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLG 201
Query: 266 F--VEKQNLID 274
VE++ ID
Sbjct: 202 LSLVERKGFID 212
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 38.2 bits (87), Expect = 8e-04
Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 18/155 (11%)
Query: 63 EDVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSV 122
++ + + + +++ + L + ++ +L++ C V
Sbjct: 3 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKK----------RGKVLDLAC----GV 48
Query: 123 FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLD 182
++ V G D SE+ + +E+ + + V D F ++ D
Sbjct: 49 GGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGD----ARKLSFEDKTFD 104
Query: 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
V+ I + P ++ V +V + LKP G +
Sbjct: 105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIM 139
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 37.5 bits (86), Expect = 0.002
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 16/114 (14%)
Query: 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAF 163
+ ++++ G+G+ PI V + L E+ DR A+
Sbjct: 106 KPDELVVDMFAGIGHLSLPI---AVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 162
Query: 164 VCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217
D D +L+ +V+ I + K G ++ +
Sbjct: 163 NMDNRDFPGENIA-----DRILMGYVVRTHE------FIPKALSIAKDGAIIHY 205
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 36.9 bits (84), Expect = 0.002
Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 14/199 (7%)
Query: 69 WDAFY-NVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVE 127
W+ +V F L + ++ + D + +++L++G G G + I
Sbjct: 45 WEDLSADVALADSF---DALMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIAL 101
Query: 128 HCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187
++ + + A + + + D+VLL
Sbjct: 102 RA--PHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTA-----DVVLLS 154
Query: 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGT 247
FVL + ++ + L+PGG +L D + L G
Sbjct: 155 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGR 214
Query: 248 LVYFFTREEVKTMFESAGF 266
+ TR+EV + SAG
Sbjct: 215 V---RTRDEVVDLAGSAGL 230
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 352 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.91 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.91 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.91 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.91 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.89 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.89 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.88 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.88 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.88 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.88 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.87 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.87 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.85 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.85 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.84 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.84 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.83 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.83 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.83 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.82 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.81 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.8 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.79 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.78 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.78 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.78 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.78 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.75 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.75 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.73 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.71 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.7 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.69 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.64 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.64 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.63 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.63 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.61 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.6 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.58 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.55 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.55 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.54 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.52 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.51 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.5 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.49 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.48 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.47 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.44 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.43 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.43 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.42 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.41 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.4 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.33 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.31 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.31 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.31 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.3 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.29 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.28 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.26 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.23 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.21 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.18 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.16 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.13 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.13 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.11 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.95 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.93 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.91 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.86 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.77 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.72 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.72 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.71 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.7 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.68 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.62 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.62 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.59 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.59 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.57 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.56 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.54 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.51 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.47 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.46 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.43 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.41 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.26 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.2 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.17 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.16 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.92 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.86 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.71 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.64 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.8 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.73 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.64 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.6 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.47 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.24 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.22 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.21 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.89 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.81 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.57 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.52 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.42 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.24 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.07 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.0 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.92 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.82 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.8 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.79 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.64 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.61 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.67 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.42 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.13 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.0 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 92.9 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.57 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 92.51 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.23 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 92.18 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.95 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 91.81 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 91.62 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.32 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 91.22 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 91.08 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 91.02 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 90.89 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 90.88 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.39 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 90.34 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 90.19 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 90.13 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 90.12 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 89.92 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.46 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 89.27 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 89.04 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 88.38 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 88.31 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 87.49 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 86.38 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 85.41 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 85.33 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 84.83 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 84.14 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 84.02 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 83.73 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 83.59 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 83.12 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 82.9 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 82.85 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 82.83 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 82.8 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 82.19 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 81.85 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 81.77 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 81.74 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 81.1 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 81.04 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 80.83 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 80.62 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.91 E-value=9.5e-25 Score=186.21 Aligned_cols=153 Identities=17% Similarity=0.207 Sum_probs=119.0
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||||||+|.++..+++ .+.+|+|+|+|+.|++.|+++.... .+++.++++|+. .+++++++||+|
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~----~l~~~~~~fD~v 85 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAP----FVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE----QMPFTDERFHIV 85 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGG----GSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-----CCCSCTTCEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHH----hCCEEEEEECCHHHHhhhhhcccccccccccccccccc----cccccccccccc
Confidence 3478999999999999999988 4568999999999999999887653 378999999987 567778999999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
+|..+++|+ +++..++++++++|||||++++.++..+.......... .........+..+++.+++.++++++
T Consensus 86 ~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~a 158 (231)
T d1vl5a_ 86 TCRIAAHHF--PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN-----YVEKERDYSHHRAWKKSDWLKMLEEA 158 (231)
T ss_dssp EEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHH-----HHHHHHCTTCCCCCBHHHHHHHHHHH
T ss_pred ccccccccc--CCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHH-----HHHhhcccCcccCCCHHHHHHHHHHC
Confidence 999999999 78899999999999999999998765443222211100 00011122334567899999999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||++++...
T Consensus 159 Gf~~~~~~~ 167 (231)
T d1vl5a_ 159 GFELEELHC 167 (231)
T ss_dssp TCEEEEEEE
T ss_pred CCEEEEEEE
Confidence 999876543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2e-24 Score=183.05 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=116.3
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+|||||||+|.++..++.. ...+|+|+|+|+.|++.|++++... ..++++.++|+.+ +++++++||+|
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~----~~~~~~~fD~I 131 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLP---LFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQD----FTPEPDSYDVI 131 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTT---TCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGG----CCCCSSCEEEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHh---cCCEEEEeecCHHHhhccccccccccccccccccccccc----ccccccccccc
Confidence 34789999999999999988764 3348999999999999999987653 3578999999984 45567899999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..+++|++.++...++++++++|+|||.+++.+...... ..+... .....++.+++.++++++
T Consensus 132 ~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~-------------~~~~~~--~~~~~~~~~~~~~l~~~a 196 (222)
T d2ex4a1 132 WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG-------------VILDDV--DSSVCRDLDVVRRIICSA 196 (222)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS-------------EEEETT--TTEEEEBHHHHHHHHHHT
T ss_pred ccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccc-------------cccccC--CceeeCCHHHHHHHHHHc
Confidence 99999999987778899999999999999999986543211 111111 122346899999999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||+++....
T Consensus 197 Gf~ii~~~~ 205 (222)
T d2ex4a1 197 GLSLLAEER 205 (222)
T ss_dssp TCCEEEEEE
T ss_pred CCEEEEEEE
Confidence 999988754
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=1.2e-24 Score=186.00 Aligned_cols=153 Identities=17% Similarity=0.210 Sum_probs=119.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++.... ..++.++++|+. .+++++++||+
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~----~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~----~~~~~~~~fD~ 85 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPY----VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE----SLPFPDDSFDI 85 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT----BCCSCTTCEEE
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHh----CCeEEEEeCChhhhhhhhhhhcccccccccccccccc----cccccccccce
Confidence 345899999999999999999984 458999999999999999987653 367999999997 56678999999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
|+|..+++|+ +++..+++++.++|||||++++.++..+....+.... ..+.......+...++..++..++++
T Consensus 86 v~~~~~l~~~--~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T d1xxla_ 86 ITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFV-----NHLNRLRDPSHVRESSLSEWQAMFSA 158 (234)
T ss_dssp EEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHH-----HHHHHHHCTTCCCCCBHHHHHHHHHH
T ss_pred eeeeceeecc--cCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHH-----HHHHhhCCCcccccCCHHHHHHHHHH
Confidence 9999999999 7889999999999999999999876554322221100 00001112334455788999999999
Q ss_pred CCCceEEee
Q psy11741 264 AGFVEKQNL 272 (352)
Q Consensus 264 ~Gf~~~~~~ 272 (352)
+||.+....
T Consensus 159 ~gf~~~~~~ 167 (234)
T d1xxla_ 159 NQLAYQDIQ 167 (234)
T ss_dssp TTEEEEEEE
T ss_pred CCCceeEEE
Confidence 999887653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.91 E-value=2.7e-24 Score=185.69 Aligned_cols=138 Identities=19% Similarity=0.338 Sum_probs=106.2
Q ss_pred hhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHH
Q psy11741 66 AKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENA 145 (352)
Q Consensus 66 ~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~ 145 (352)
.++|+..|......+.....++...+..... .++++|||+|||+|..+..|++ .+.+|+|+|+|+.|
T Consensus 9 a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~iLDiGcGtG~~~~~l~~----~~~~v~gvD~s~~m 75 (251)
T d1wzna1 9 AEYYDTIYRRRIERVKAEIDFVEEIFKEDAK---------REVRRVLDLACGTGIPTLELAE----RGYEVVGLDLHEEM 75 (251)
T ss_dssp GGGHHHHTHHHHHTHHHHHHHHHHHHHHTCS---------SCCCEEEEETCTTCHHHHHHHH----TTCEEEEEESCHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC---------CCCCEEEEeCCCCCccchhhcc----cceEEEEEeecccc
Confidence 3445666654433332333333333433322 2367999999999999999998 66799999999999
Q ss_pred HHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh-hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 146 VNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI-FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 146 l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~-~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++.|++++...+.++.+.++|+.+ ++++ ++||+|+|. .+++|++.+++..+|++++++|||||++++...+
T Consensus 76 i~~a~~~~~~~~~~i~~~~~d~~~----l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 76 LRVARRKAKERNLKIEFLQGDVLE----IAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp HHHHHHHHHHTTCCCEEEESCGGG----CCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccccccccchheehhhhh----cccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 999999987777789999999984 4444 689999986 5788888788999999999999999999997654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=3.9e-23 Score=173.26 Aligned_cols=139 Identities=22% Similarity=0.360 Sum_probs=109.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||||||+|.++..+.+ ++|+|+|+.|++.|+++ ++.+.++|+. .+++++++||+|++.
T Consensus 37 ~~~vLDiGcG~G~~~~~~~~--------~~giD~s~~~~~~a~~~------~~~~~~~d~~----~l~~~~~~fD~I~~~ 98 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLKI--------KIGVEPSERMAEIARKR------GVFVLKGTAE----NLPLKDESFDFALMV 98 (208)
T ss_dssp SSCEEEETCTTSTTHHHHTC--------CEEEESCHHHHHHHHHT------TCEEEECBTT----BCCSCTTCEEEEEEE
T ss_pred CCeEEEECCCCcccccccce--------EEEEeCChhhccccccc------cccccccccc----ccccccccccccccc
Confidence 55899999999999877643 58999999999999875 4789999997 456778999999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCc
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFV 267 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~ 267 (352)
.+++|+ +++..++++++++|+|||.+++.+++............. .......+..+++.+++.++++++||+
T Consensus 99 ~~l~h~--~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~l~~~l~~~Gf~ 170 (208)
T d1vlma_ 99 TTICFV--DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNK------EKSVFYKNARFFSTEELMDLMRKAGFE 170 (208)
T ss_dssp SCGGGS--SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTT------TC-CCSTTCCCCCHHHHHHHHHHTTCE
T ss_pred cccccc--cccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhcc------ccccccccccCCCHHHHHHHHHHcCCe
Confidence 999999 678899999999999999999998876543222111110 001112233568999999999999999
Q ss_pred eEEee
Q psy11741 268 EKQNL 272 (352)
Q Consensus 268 ~~~~~ 272 (352)
++.+.
T Consensus 171 ~i~v~ 175 (208)
T d1vlma_ 171 EFKVV 175 (208)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.89 E-value=1.3e-22 Score=174.62 Aligned_cols=105 Identities=15% Similarity=0.250 Sum_probs=91.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+++|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|+++....+.+++++++|+.+. ++ +++||+|+|.
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~----~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~----~~-~~~fD~i~~~ 108 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCP----KFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL----NI-NRKFDLITCC 108 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGG----GSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC----CC-SCCEEEEEEC
T ss_pred CCeEEEEeCcCCHHHHHHHH----hCCccEeeccchhhhhhccccccccCccceeeccchhhh----cc-ccccccccee
Confidence 67999999999999999998 566899999999999999998877777899999999853 32 5689999986
Q ss_pred -hhhhcc-ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 188 -FVLDAI-NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 188 -~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+++|+ +++++.+++++++++|+|||.|++...+
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 109 LDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred eeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 567777 6789999999999999999999986544
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.88 E-value=1.1e-22 Score=172.67 Aligned_cols=160 Identities=18% Similarity=0.330 Sum_probs=117.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||||||+|..+..+++....++.+|+|+|+|+.|++.|+++....+ .++.+..+|+.+ ++.+.+|+|+
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~------~~~~~~d~i~ 113 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH------VEIKNASMVI 113 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT------CCCCSEEEEE
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc------cccccceeeE
Confidence 78999999999999999998765588999999999999999999876533 456666776652 3456899999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHh---------hhcCccccC-ceeec--CCCeeeeccC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLR---------FKKGRCLQD-NFYAR--GDGTLVYFFT 253 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~--~~~~~~~~~~ 253 (352)
+..++||+++++..++|++++++|||||.+++.++..+...... +........ ..... .-......++
T Consensus 114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 193 (225)
T d1im8a_ 114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDS 193 (225)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCC
T ss_pred EeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCC
Confidence 99999999889999999999999999999999876544322111 000000000 00000 0001123478
Q ss_pred HHHHHHHHHhCCCceEEeee
Q psy11741 254 REEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 254 ~~~~~~ll~~~Gf~~~~~~~ 273 (352)
.+++..+++++||+.++...
T Consensus 194 ~~~~~~~L~~aGF~~v~~~~ 213 (225)
T d1im8a_ 194 IETHKVRLKNVGFSQVELWF 213 (225)
T ss_dssp HHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHcCCCceEEee
Confidence 99999999999999988753
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.6e-22 Score=175.00 Aligned_cols=185 Identities=17% Similarity=0.198 Sum_probs=131.1
Q ss_pred hhhhHHHHhhhcccccccc--hhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCC
Q psy11741 65 VAKNWDAFYNVHQNRFFKD--RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFS 142 (352)
Q Consensus 65 ~~~yw~~~y~~~~~~f~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s 142 (352)
...||+.||......+... .+|+.+.+.+++.. ...++.+|||||||+|.++..++.. ...+|+|+|+|
T Consensus 13 ~~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~vLDlGcG~G~~~~~~~~~---~~~~v~giD~S 83 (257)
T d2a14a1 13 PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGP------GGLQGDTLIDIGSGPTIYQVLAACD---SFQDITLSDFT 83 (257)
T ss_dssp HHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHST------TSCCEEEEEESSCTTCCGGGTTGGG---TEEEEEEEESC
T ss_pred hHHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcc------cCCCCCEEEEECCCCCHhHHHHhcc---ccCcEEEecCC
Confidence 4689999998766544433 34455555554433 2334789999999999998777663 34479999999
Q ss_pred HHHHHHHHhccccCCCce-------------------------------EEEEecCCCCCCCCCCCCCcceEEEehhhhh
Q psy11741 143 ENAVNILKEHEEYKPDRC-------------------------------HAFVCDVTSEDWNPPFAPESLDIVLLIFVLD 191 (352)
Q Consensus 143 ~~~l~~a~~~~~~~~~~v-------------------------------~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~ 191 (352)
+.|++.|++++....... .....++.......+++.++||+|++.+++|
T Consensus 84 ~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 163 (257)
T d2a14a1 84 DRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAME 163 (257)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH
T ss_pred HHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHH
Confidence 999999998865432211 1222333333334466788999999999999
Q ss_pred ccC--hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCe-eeeccCHHHHHHHHHhCCCce
Q psy11741 192 AIN--PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGT-LVYFFTREEVKTMFESAGFVE 268 (352)
Q Consensus 192 ~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~Gf~~ 268 (352)
|+. .+++..++++++++|||||.+++.++.... .+...... +...++.+++.++++++||++
T Consensus 164 ~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 164 CACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP---------------SYMVGKREFSCVALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp HHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC---------------EEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred HhcccHHHHHHHHHHHHhccCCCcEEEEEEecccc---------------cceeccccccccCCCHHHHHHHHHHCCCEE
Confidence 984 468889999999999999999998764321 12222222 345689999999999999998
Q ss_pred EEeee
Q psy11741 269 KQNLI 273 (352)
Q Consensus 269 ~~~~~ 273 (352)
+++..
T Consensus 229 ~~~~~ 233 (257)
T d2a14a1 229 EQLLH 233 (257)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88743
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.88 E-value=3.4e-22 Score=172.17 Aligned_cols=145 Identities=11% Similarity=0.175 Sum_probs=114.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|+++..++... ..+|+|+|+|+.|++.|+++.... .++++.++|+. .+++++++||+|++
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~---~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~~~~d~~----~~~~~~~~fD~I~~ 164 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKL---YATTDLLEPVKHMLEEAKRELAGM-PVGKFILASME----TATLPPNTYDLIVI 164 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHH---CSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGG----GCCCCSSCEEEEEE
T ss_pred CCCeEEEecccCChhhHHHHhhc---CceEEEEcCCHHHHHhhhcccccc-ccceeEEcccc----ccccCCCccceEEe
Confidence 47899999999999999988753 237999999999999999887533 56899999997 44556789999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
..+++|++.++...+|++++++|+|||.+++.+...... .......+ .....+.+++.++++++||
T Consensus 165 ~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~------------~~~~d~~d--~~~~rs~~~~~~l~~~aGf 230 (254)
T d1xtpa_ 165 QWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD------------RFLVDKED--SSLTRSDIHYKRLFNESGV 230 (254)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--C------------CEEEETTT--TEEEBCHHHHHHHHHHHTC
T ss_pred eccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCC------------cceecccC--CceeCCHHHHHHHHHHcCC
Confidence 999999987888899999999999999999976432110 00111112 2234689999999999999
Q ss_pred ceEEeee
Q psy11741 267 VEKQNLI 273 (352)
Q Consensus 267 ~~~~~~~ 273 (352)
+++....
T Consensus 231 ~ii~~~~ 237 (254)
T d1xtpa_ 231 RVVKEAF 237 (254)
T ss_dssp CEEEEEE
T ss_pred EEEEEEe
Confidence 9987654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.88 E-value=2.6e-22 Score=176.11 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=115.3
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
..++.+|||||||+|.++..|++. .+.+|+|+|+|+.|++.|+++.... ..++++.++|+. .+|+++++||
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~---~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~----~l~~~~~sfD 137 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRK---FGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL----EIPCEDNSYD 137 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHH---HCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT----SCSSCTTCEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhcc---CCcEEEEEeccchhhhhhhcccccccccccccccccccc----cccccccccc
Confidence 345899999999999999999986 4568999999999999999887653 367999999997 5677889999
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHH
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFE 262 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 262 (352)
+|++..+++|+ +++..++++++++|||||+|++.++........... ..++... ....+.+.+++..+++
T Consensus 138 ~V~~~~~l~h~--~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~s~~~~~~~l~ 207 (282)
T d2o57a1 138 FIWSQDAFLHS--PDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI------QPILDRI--KLHDMGSLGLYRSLAK 207 (282)
T ss_dssp EEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGG------HHHHHHH--TCSSCCCHHHHHHHHH
T ss_pred hhhccchhhhc--cCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHH------HHHHHHh--ccCCCCCHHHHHHHHH
Confidence 99999999999 678899999999999999999976543211100000 0000000 0112357889999999
Q ss_pred hCCCceEEe
Q psy11741 263 SAGFVEKQN 271 (352)
Q Consensus 263 ~~Gf~~~~~ 271 (352)
++||..+..
T Consensus 208 ~~Gf~~i~~ 216 (282)
T d2o57a1 208 ECGLVTLRT 216 (282)
T ss_dssp HTTEEEEEE
T ss_pred HcCCceEEE
Confidence 999987765
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.87 E-value=2.5e-22 Score=170.19 Aligned_cols=106 Identities=24% Similarity=0.416 Sum_probs=96.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||||||+|.++..+++ .+.+|+|+|+|+.|++.|+++....+.++.++++|+. .+++++++||+|+|.
T Consensus 38 ~~~ILDiGcG~G~~~~~la~----~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~----~l~~~~~~fD~I~~~ 109 (226)
T d1ve3a1 38 RGKVLDLACGVGGFSFLLED----YGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDAR----KLSFEDKTFDYVIFI 109 (226)
T ss_dssp CCEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTT----SCCSCTTCEEEEEEE
T ss_pred CCEEEEECCCcchhhhhHhh----hhcccccccccccchhhhhhhhccccccccccccccc----cccccCcCceEEEEe
Confidence 67999999999999999998 6789999999999999999987766677889999987 567778999999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.+++|++..++.++|+++.++|||||.+++...+
T Consensus 110 ~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 110 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9999998788999999999999999999987654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.4e-21 Score=167.90 Aligned_cols=192 Identities=16% Similarity=0.199 Sum_probs=135.1
Q ss_pred HHHhhH-HhhhhHHHHhhhcccccccchhhHH---HhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCC
Q psy11741 58 IQTLNE-DVAKNWDAFYNVHQNRFFKDRHWLF---TEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDN 133 (352)
Q Consensus 58 ~~~~~~-~~~~yw~~~y~~~~~~f~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~ 133 (352)
.+.|.. .+..||+.+|......+..+..|.. ..+.++.+. +..++.+|||+|||+|.++...+.. ..
T Consensus 7 ~~~~~~f~~~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~------g~~~g~~vLDiGcG~g~~~~~~~~~---~~ 77 (263)
T d2g72a1 7 ASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFAT------GEVSGRTLIDIGSGPTVYQLLSACS---HF 77 (263)
T ss_dssp HHHGGGCCHHHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHT------SCSCCSEEEEETCTTCCGGGTTGGG---GC
T ss_pred HHHHhhcCHHHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCC------CCCCCcEEEEeccCCCHHHHHHhcc---cC
Confidence 455665 4678999999877666766664443 444444433 2345889999999999887655543 33
Q ss_pred eEEEEEeCCHHHHHHHHhccccCCCc-------------------------------eEEEEecCCCCCC--CCCCCCCc
Q psy11741 134 VFVYGCDFSENAVNILKEHEEYKPDR-------------------------------CHAFVCDVTSEDW--NPPFAPES 180 (352)
Q Consensus 134 ~~v~gvD~s~~~l~~a~~~~~~~~~~-------------------------------v~~~~~d~~~~~~--~~~~~~~~ 180 (352)
.+|+|+|+|+.|++.++++....... .....+|+..... ..+...++
T Consensus 78 ~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 157 (263)
T d2g72a1 78 EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLP 157 (263)
T ss_dssp SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSS
T ss_pred CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCc
Confidence 48999999999999998875432211 1234567664331 22344578
Q ss_pred ceEEEehhhhhccC--hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCe-eeeccCHHHH
Q psy11741 181 LDIVLLIFVLDAIN--PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGT-LVYFFTREEV 257 (352)
Q Consensus 181 fD~V~~~~~l~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 257 (352)
||+|++.++++|+. .+++..++++++++|||||.|++..... ..++..+... ....++.+++
T Consensus 158 fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~---------------~~~~~~~~~~~~~~~~t~e~v 222 (263)
T d2g72a1 158 ADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE---------------ESWYLAGEARLTVVPVSEEEV 222 (263)
T ss_dssp EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES---------------CCEEEETTEEEECCCCCHHHH
T ss_pred cCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccC---------------CcccccCCcccccCCCCHHHH
Confidence 99999999999984 4578999999999999999999975422 2223333332 2345899999
Q ss_pred HHHHHhCCCceEEeee
Q psy11741 258 KTMFESAGFVEKQNLI 273 (352)
Q Consensus 258 ~~ll~~~Gf~~~~~~~ 273 (352)
.++++++||+++....
T Consensus 223 ~~~l~~aGf~v~~~~~ 238 (263)
T d2g72a1 223 REALVRSGYKVRDLRT 238 (263)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 9999999999987654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=7.4e-21 Score=161.52 Aligned_cols=172 Identities=13% Similarity=0.165 Sum_probs=127.4
Q ss_pred hhhHHHHhhhcccccccc--hhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH
Q psy11741 66 AKNWDAFYNVHQNRFFKD--RHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE 143 (352)
Q Consensus 66 ~~yw~~~y~~~~~~f~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 143 (352)
.+.|+..|......|... ..++...+..++.. .++.+|||+|||+|..+..|++ .|++|+|+|+|+
T Consensus 10 ~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~--------~~~~rvLd~GCG~G~~a~~LA~----~G~~V~gvD~S~ 77 (229)
T d2bzga1 10 LEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKG--------KSGLRVFFPLCGKAVEMKWFAD----RGHSVVGVEISE 77 (229)
T ss_dssp HHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTT--------CCSCEEEETTCTTCTHHHHHHH----TTCEEEEECSCH
T ss_pred HHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCC--------CCCCEEEEeCCCCcHHHHHHHh----CCCcEEEEeCCH
Confidence 356888887766665432 34444555454433 2378999999999999999999 888999999999
Q ss_pred HHHHHHHhcccc------------------CCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHH
Q psy11741 144 NAVNILKEHEEY------------------KPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQV 205 (352)
Q Consensus 144 ~~l~~a~~~~~~------------------~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~ 205 (352)
.+++.|+++... ...++++.++|+... .+...+.||+|+...+++|+++++....++++
T Consensus 78 ~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l---~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~ 154 (229)
T d2bzga1 78 LGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL---PRTNIGKFDMIWDRGALVAINPGDRKCYADTM 154 (229)
T ss_dssp HHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG---GGSCCCCEEEEEESSSTTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc---cccccCceeEEEEEEEEEeccchhhHHHHHHH
Confidence 999999876431 235789999998742 23457899999999999999999999999999
Q ss_pred HHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 206 YKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 206 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
.++|||||.+++..+..... ......+..+.+++..++.. +|.+...
T Consensus 155 ~~~LkpgG~~~l~~~~~~~~------------------~~~gpp~~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 155 FSLLGKKFQYLLCVLSYDPT------------------KHPGPPFYVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp HHTEEEEEEEEEEEEECCTT------------------TCCCSSCCCCHHHHHHHHTT-TEEEEEE
T ss_pred HhhcCCcceEEEEEcccCCC------------------CCCCCCCCCCHHHHHHHhcC-CCEEEEE
Confidence 99999999988876543210 00111245789999999954 6665443
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.1e-21 Score=166.74 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=114.1
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcce
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
..++.+|||||||+|..+..+++. .+.+|+|+|+|+.|++.|+++....+ .++++.++|+.+ + ..+++||
T Consensus 31 l~pg~~VLDiGCG~G~~~~~la~~---~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~----~-~~~~~fD 102 (245)
T d1nkva_ 31 MKPGTRILDLGSGSGEMLCTWARD---HGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG----Y-VANEKCD 102 (245)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHH---TCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT----C-CCSSCEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh---cCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh----c-cccCcee
Confidence 345889999999999999999886 45799999999999999999876543 569999999974 3 3478999
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhH-hhhcCccccCceeecCCCeeeeccCHHHHHHHH
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL-RFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 261 (352)
+|+|..+++|+ .++..++++++++|||||++++.++........ ..... ........+.+..++...+
T Consensus 103 ~v~~~~~~~~~--~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 171 (245)
T d1nkva_ 103 VAACVGATWIA--GGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQA---------CGVSSTSDFLTLPGLVGAF 171 (245)
T ss_dssp EEEEESCGGGT--SSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHT---------TTCSCGGGSCCHHHHHHHH
T ss_pred EEEEEehhhcc--CCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHH---------hccCCCcccCCHHHHHHHH
Confidence 99999999999 678999999999999999999986532211100 00000 0011122356788999999
Q ss_pred HhCCCceEEee
Q psy11741 262 ESAGFVEKQNL 272 (352)
Q Consensus 262 ~~~Gf~~~~~~ 272 (352)
+++||.++...
T Consensus 172 ~~aG~~~v~~~ 182 (245)
T d1nkva_ 172 DDLGYDVVEMV 182 (245)
T ss_dssp HTTTBCCCEEE
T ss_pred HHcCCEEEEEE
Confidence 99999987653
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.84 E-value=5.2e-21 Score=162.05 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=113.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||||||+|.++..+++ .+.+|+|+|+|+.|++.|+++.. .++.+..+|+.+ .+. +++||+|++.
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~----~g~~v~giD~s~~~i~~a~~~~~---~~~~~~~~~~~~----~~~-~~~fD~I~~~ 88 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQE----HFNDITCVEASEEAISHAQGRLK---DGITYIHSRFED----AQL-PRRYDNIVLT 88 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTT----TCSCEEEEESCHHHHHHHHHHSC---SCEEEEESCGGG----CCC-SSCEEEEEEE
T ss_pred CCcEEEEeCCCcHHHHHHHH----cCCeEEEEeCcHHHhhhhhcccc---cccccccccccc----ccc-cccccccccc
Confidence 67899999999999999988 56689999999999999998754 468999998874 232 5799999999
Q ss_pred hhhhccChhHHHHHHHHHH-HhcCCCEEEEEEeCCCCchhhH-hhhcCccccCceee--cCCCeeeeccCHHHHHHHHHh
Q psy11741 188 FVLDAINPNKMQHVINQVY-KYLKPGGMVLFRDYGRYDLVQL-RFKKGRCLQDNFYA--RGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~ 263 (352)
.+++|+ +++..++++++ ++|+|||.+++..++....... ....+.......+. .....+.+.++.+++..++++
T Consensus 89 ~vleh~--~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~ 166 (225)
T d2p7ia1 89 HVLEHI--DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 166 (225)
T ss_dssp SCGGGC--SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred ceeEec--CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHH
Confidence 999999 78899999998 7899999999988765543221 11111100000000 001124456899999999999
Q ss_pred CCCceEEe
Q psy11741 264 AGFVEKQN 271 (352)
Q Consensus 264 ~Gf~~~~~ 271 (352)
+||+++..
T Consensus 167 ~Gf~i~~~ 174 (225)
T d2p7ia1 167 AGLQVTYR 174 (225)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.84 E-value=6e-21 Score=166.97 Aligned_cols=107 Identities=17% Similarity=0.228 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++... .+.+|+|+|+|+.|++.|+++....+.++++.++|+.+ +++ +++||+|++
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~-~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~----~~~-~~~fD~v~~ 100 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLP-EGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE----IEL-NDKYDIAIC 100 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSC-TTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTT----CCC-SSCEEEEEE
T ss_pred CcCEEEEecCcCCHHHHHHHHhCC-CCCEEEEEecchhHhhhhhccccccccccccccccccc----ccc-cCCceEEEE
Confidence 378999999999999999998763 46799999999999999999988777789999999874 444 457999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
..+++|+ +++..++++++++|||||.+++.++.
T Consensus 101 ~~~l~~~--~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 101 HAFLLHM--TTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp ESCGGGC--SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ehhhhcC--CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 9999999 67889999999999999999998754
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.83 E-value=5.8e-20 Score=158.26 Aligned_cols=157 Identities=17% Similarity=0.264 Sum_probs=112.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+|||+|||+|..+..+++. ...+|+|+|+|+.|++.|+++.... ..++.+.++|+.... ....++||+|+
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~---~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~---~~~~~~fD~V~ 98 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERA---GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH---MDLGKEFDVIS 98 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHH---TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC---CCCSSCEEEEE
T ss_pred cCEEEEecccCcHHHHHHHHc---CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc---ccccccceEEE
Confidence 789999999999999999884 3348999999999999999887653 357899999987431 12367899999
Q ss_pred ehhhhhcc--ChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccc-----------------cCceee--c-
Q psy11741 186 LIFVLDAI--NPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCL-----------------QDNFYA--R- 243 (352)
Q Consensus 186 ~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~--~- 243 (352)
|.+++||+ +.+++..+++++.++|||||++++..++....... ...+... ....+. .
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 177 (252)
T d1ri5a_ 99 SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILER-YKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 177 (252)
T ss_dssp EESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH-HHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred EcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHH-HHhcccCCceEEEecccccCCcCcCceEEEEEcc
Confidence 99999987 45678899999999999999999976543221110 0000000 000000 0
Q ss_pred --CCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 244 --GDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 244 --~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
......+....+.+.++++++||+.++.
T Consensus 178 ~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~ 207 (252)
T d1ri5a_ 178 DSVNNCIEYFVDFTRMVDGFKRLGLSLVER 207 (252)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEE
T ss_pred cccccCcccccCHHHHHHHHHHcCCEEEEE
Confidence 1122334567899999999999987764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.83 E-value=5.7e-20 Score=152.44 Aligned_cols=105 Identities=19% Similarity=0.311 Sum_probs=92.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+++|||||||+|..+..+++ .+.+|+|+|+|+.|++.|+++....+ .++.+...|+.. +++ +++||+|++
T Consensus 31 ~grvLDiGcG~G~~~~~la~----~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~----~~~-~~~fD~I~~ 101 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAA----NGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT----LTF-DGEYDFILS 101 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTT----CCC-CCCEEEEEE
T ss_pred CCcEEEECCCCCHHHHHHHH----HhhhhccccCcHHHHHHHHHHhhhccccchhhhheeccc----ccc-cccccEEEE
Confidence 56999999999999999998 67899999999999999998876543 568999999874 232 688999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
..+++|+++++..+++++++++|+|||++++....
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999998889999999999999999999997654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=1.3e-20 Score=161.67 Aligned_cols=99 Identities=18% Similarity=0.305 Sum_probs=85.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|+++.. ..++.+|+. .+++++++||+|++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~~l~~a~~~~~-----~~~~~~~~~----~l~~~~~~fD~ii~~ 109 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQE----RGFEVVLVDPSKEMLEVAREKGV-----KNVVEAKAE----DLPFPSGAFEAVLAL 109 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHT----TTCEEEEEESCHHHHHHHHHHTC-----SCEEECCTT----SCCSCTTCEEEEEEC
T ss_pred CCEEEEECCCCchhcccccc----cceEEEEeecccccccccccccc-----ccccccccc----ccccccccccceeee
Confidence 77999999999999999988 67799999999999999998743 236678877 567778999999985
Q ss_pred -hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 188 -FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 188 -~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.++||+ +++..+|+++.++|||||++++..++
T Consensus 110 ~~~~~~~--~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 110 GDVLSYV--ENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp SSHHHHC--SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cchhhhh--hhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 589999 67788999999999999999998654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.82 E-value=2.2e-20 Score=154.79 Aligned_cols=137 Identities=9% Similarity=0.013 Sum_probs=104.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-------------CCceEEEEecCCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-------------PDRCHAFVCDVTSEDWN 173 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------------~~~v~~~~~d~~~~~~~ 173 (352)
++.+|||+|||+|..+..||+ .|++|+|+|+|+.|++.|+++.+.. ...+.+.++|+...
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~----~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l--- 92 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSG----QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL--- 92 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHH----HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS---
T ss_pred CCCEEEEecCcCCHHHHHHHH----cCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccc---
Confidence 488999999999999999998 6789999999999999999876432 34567888888742
Q ss_pred CCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccC
Q psy11741 174 PPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFT 253 (352)
Q Consensus 174 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (352)
.+....+||+|++..+++++++++...++++++++|||||.+++........ ......+..+
T Consensus 93 ~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~------------------~~~~p~~~~~ 154 (201)
T d1pjza_ 93 TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA------------------LLEGPPFSVP 154 (201)
T ss_dssp THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS------------------SSSSCCCCCC
T ss_pred ccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccc------------------cCCCccccCC
Confidence 1233568999999999999988889999999999999999988865543211 0011123467
Q ss_pred HHHHHHHHHhCCCceE
Q psy11741 254 REEVKTMFESAGFVEK 269 (352)
Q Consensus 254 ~~~~~~ll~~~Gf~~~ 269 (352)
.+++..++. .+|.+.
T Consensus 155 ~~el~~l~~-~~~~i~ 169 (201)
T d1pjza_ 155 QTWLHRVMS-GNWEVT 169 (201)
T ss_dssp HHHHHHTSC-SSEEEE
T ss_pred HHHHHHHhC-CCcEEE
Confidence 788887764 456543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.81 E-value=8.4e-20 Score=157.22 Aligned_cols=153 Identities=19% Similarity=0.235 Sum_probs=113.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+..+|||||||+|.++..+++++ ++.+++++|+ +.+++.++++.... ..++.++.+|+.+. . ..+||+|
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~--p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~---~---~~~~D~v 150 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRA--PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---L---PRKADAI 150 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC--TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---C---SSCEEEE
T ss_pred cCCEEEEeCCCCCHHHHHHHHhc--ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh---c---ccchhhe
Confidence 36799999999999999999987 8899999998 56899998887653 36799999998642 2 3579999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++..++||+++++...+|++++++|||||.|++.+............. ..+.-....... ...++.+++..+++++
T Consensus 151 ~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~-~~~dl~~~~~~~---g~~rt~~e~~~ll~~A 226 (253)
T d1tw3a2 151 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQF-TELDLRMLVFLG---GALRTREKWDGLAASA 226 (253)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHH-HHHHHHHHHHHS---CCCCBHHHHHHHHHHT
T ss_pred eeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHH-HHhhHHHHhhCC---CcCCCHHHHHHHHHHC
Confidence 999999999888888999999999999999999876543211100000 000000000000 1235899999999999
Q ss_pred CCceEEee
Q psy11741 265 GFVEKQNL 272 (352)
Q Consensus 265 Gf~~~~~~ 272 (352)
||+++++.
T Consensus 227 Gf~~~~v~ 234 (253)
T d1tw3a2 227 GLVVEEVR 234 (253)
T ss_dssp TEEEEEEE
T ss_pred CCeEEEEE
Confidence 99988764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=1.2e-19 Score=157.89 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=114.4
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
...++.+|||||||.|.++..+++. .+.+|+|+|+|+.+++.|++++...+ .++.+...|... .+++|
T Consensus 49 ~l~~g~~VLDiGCG~G~~a~~~a~~---~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-------~~~~f 118 (280)
T d2fk8a1 49 DLKPGMTLLDIGCGWGTTMRRAVER---FDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-------FAEPV 118 (280)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHH---HCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-------CCCCC
T ss_pred CCCCCCEEEEecCCchHHHHHHHHh---CceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-------hccch
Confidence 3556899999999999999998876 46799999999999999999876644 456666666653 25789
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhc-----CccccCceeecCCCeeeeccCHHH
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK-----GRCLQDNFYARGDGTLVYFFTREE 256 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 256 (352)
|.|++..+++|+..++...++++++++|||||.+++.+............. .......+....--+....++.++
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~ 198 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM 198 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHh
Confidence 999999999999888899999999999999999999765433221110000 000000000000001113468899
Q ss_pred HHHHHHhCCCceEEee
Q psy11741 257 VKTMFESAGFVEKQNL 272 (352)
Q Consensus 257 ~~~ll~~~Gf~~~~~~ 272 (352)
+...++++||.+....
T Consensus 199 l~~~~e~aGf~v~~~~ 214 (280)
T d2fk8a1 199 MVEHGEKAGFTVPEPL 214 (280)
T ss_dssp HHHHHHHTTCBCCCCE
T ss_pred hhhhHHhhccccceee
Confidence 9999999999998764
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3.5e-19 Score=155.74 Aligned_cols=180 Identities=14% Similarity=0.108 Sum_probs=119.9
Q ss_pred chhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhc----CCCCeEEEEEeCCHHHHHHHHhccccC--
Q psy11741 83 DRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHC----KNDNVFVYGCDFSENAVNILKEHEEYK-- 156 (352)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~~~~~~v~gvD~s~~~l~~a~~~~~~~-- 156 (352)
-..|+.+.++.++.... ...+..+|||||||+|.++..++..+ ......++|+|+|+.|++.|+++....
T Consensus 20 ~~~~~~~~l~~~l~~l~----~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~ 95 (280)
T d1jqea_ 20 MQEFMDKKLPGIIGRIG----DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN 95 (280)
T ss_dssp HHHHHHHTHHHHTTTTT----TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHhc----cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc
Confidence 34566666666655432 22334589999999999988887653 223457899999999999999886542
Q ss_pred CCceEEE--EecCCCC--CCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhc
Q psy11741 157 PDRCHAF--VCDVTSE--DWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK 232 (352)
Q Consensus 157 ~~~v~~~--~~d~~~~--~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 232 (352)
..++.+. ..++... ....+.++++||+|++..+++|+ +++..++++++++|+|||.+++...+........+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~--~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~ 173 (280)
T d1jqea_ 96 LENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKK 173 (280)
T ss_dssp CTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHH
T ss_pred cccccccchhhhhhhhcchhcccCCCCceeEEEEccceecC--CCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHH
Confidence 1334433 3222110 00124457899999999999999 7889999999999999999999876554321110000
Q ss_pred CccccCceeecCCCeeeeccCHHHHHHHHHhCCCceEEeeee
Q psy11741 233 GRCLQDNFYARGDGTLVYFFTREEVKTMFESAGFVEKQNLID 274 (352)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~~ 274 (352)
+... ...+.+..+++.+++..++++.||........
T Consensus 174 ---~~~~---~~~~~~~~~~~~~~~~~~L~~~G~~~~~~~~~ 209 (280)
T d1jqea_ 174 ---YGSR---FPQDDLCQYITSDDLTQMLDNLGLKYECYDLL 209 (280)
T ss_dssp ---HGGG---SCCCTTSCCCCHHHHHHHHHHHTCCEEEEEEC
T ss_pred ---HHHh---cCCCcccccCCHHHHHHHHHHCCCceEEEecc
Confidence 0000 11222334678899999999999987665443
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.78 E-value=3.6e-19 Score=153.18 Aligned_cols=155 Identities=20% Similarity=0.216 Sum_probs=112.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+..+|||||||+|.++..+++++ |+.+++++|+ +.+++.++++.... ..++.+..+|+.+ . . +.+||+|
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~--P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~---~--~-p~~~D~v 151 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRA--PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK---P--L-PVTADVV 151 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHC--TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS---C--C-SCCEEEE
T ss_pred cCCEEEEECCCCCHHHHHHHHhh--cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc---c--c-cccchhh
Confidence 36799999999999999999988 8999999998 77899998877653 3678999998864 2 2 3469999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++.+++|++++++...+|++++++|||||+++|.+................+.-.......+ ..++.+++.++++++
T Consensus 152 ~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g---~~rt~~e~~~ll~~A 228 (256)
T d1qzza2 152 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGG---RVRTRDEVVDLAGSA 228 (256)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSC---CCCCHHHHHHHHHTT
T ss_pred hccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCC---ccCCHHHHHHHHHHC
Confidence 99999999988888999999999999999999987532211000000000000000000111 236899999999999
Q ss_pred CCceEEeee
Q psy11741 265 GFVEKQNLI 273 (352)
Q Consensus 265 Gf~~~~~~~ 273 (352)
||++++...
T Consensus 229 Gf~~~~~~~ 237 (256)
T d1qzza2 229 GLALASERT 237 (256)
T ss_dssp TEEEEEEEE
T ss_pred CCceeEEEE
Confidence 999987643
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=7.3e-19 Score=153.15 Aligned_cols=159 Identities=16% Similarity=0.102 Sum_probs=115.1
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
...++.+|||||||.|.++..+++.. +.+|+|+++|+.+++.|++++...+ ..+.+...|.. ..+++|
T Consensus 58 ~l~~G~~VLDiGCG~G~~~~~~a~~~---g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~-------~~~~~f 127 (291)
T d1kpia_ 58 NLEPGMTLLDIGCGWGSTMRHAVAEY---DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE-------EFDEPV 127 (291)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG-------GCCCCC
T ss_pred CCCCCCEEEEecCcchHHHHHHHHhc---CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc-------cccccc
Confidence 45679999999999999999999874 5699999999999999998876533 56777777754 246899
Q ss_pred eEEEehhhhhccCh-------hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhc-Ccc----ccCceeecCCCeee
Q psy11741 182 DIVLLIFVLDAINP-------NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK-GRC----LQDNFYARGDGTLV 249 (352)
Q Consensus 182 D~V~~~~~l~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~ 249 (352)
|.|++..+++|+.. ++...+++++.++|||||++++.++...+........ ... ....+....--+..
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg 207 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 207 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCC
Confidence 99999999999953 4688999999999999999999887654332211000 000 00000000000111
Q ss_pred eccCHHHHHHHHHhCCCceEEee
Q psy11741 250 YFFTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 250 ~~~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
...+..++...++++||++....
T Consensus 208 ~lps~~~~~~~~e~~gl~v~~~~ 230 (291)
T d1kpia_ 208 RLPRISQVDYYSSNAGWKVERYH 230 (291)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCHHHHHhhhcccccccceee
Confidence 34688999999999999988763
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=6.6e-19 Score=152.98 Aligned_cols=154 Identities=15% Similarity=0.213 Sum_probs=116.6
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
...++.+|||||||.|.++..+++. .|++|+|+++|+..++.|+++.... ..++.+..+|... + +++|
T Consensus 59 ~l~~G~~VLDiGCG~G~~a~~~a~~---~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~----~---~~~f 128 (285)
T d1kpga_ 59 GLQPGMTLLDVGCGWGATMMRAVEK---YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ----F---DEPV 128 (285)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHH---HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG----C---CCCC
T ss_pred CCCCCCEEEEecCcchHHHHHHHhc---CCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc----c---cccc
Confidence 4667999999999999999999997 4679999999999999999886553 3678899998863 2 4789
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhc----------CccccCceeecCCCeeeec
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKK----------GRCLQDNFYARGDGTLVYF 251 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 251 (352)
|.|++..+++|+...+...+++++.++|||||.+++.++............ ...+... ..+.+ ..
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~ky--iFpgg---~l 203 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE--IFPGG---RL 203 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH--TSTTC---CC
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHH--hccCC---CC
Confidence 999999999999777888999999999999999999876532211110000 0000000 11111 24
Q ss_pred cCHHHHHHHHHhCCCceEEee
Q psy11741 252 FTREEVKTMFESAGFVEKQNL 272 (352)
Q Consensus 252 ~~~~~~~~ll~~~Gf~~~~~~ 272 (352)
++.+++..+++++||.+.+..
T Consensus 204 Psl~~~~~~~e~agf~v~~~~ 224 (285)
T d1kpga_ 204 PSIPMVQECASANGFTVTRVQ 224 (285)
T ss_dssp CCHHHHHHHHHTTTCEEEEEE
T ss_pred CChhhHHHHHHHhchhhcccc
Confidence 688999999999999998763
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=3.1e-19 Score=156.98 Aligned_cols=141 Identities=16% Similarity=0.349 Sum_probs=96.9
Q ss_pred HhhhhHHHHhhhcccccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCH
Q psy11741 64 DVAKNWDAFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSE 143 (352)
Q Consensus 64 ~~~~yw~~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 143 (352)
.+.++|+.++............|+. .+++.. ++.+|||+|||+|.++..|++ .+.+|+|+|+|+
T Consensus 25 ~~~~~~~~~~~~~~~r~~~~~~~l~----~~l~~~--------~~~~vLD~GcG~G~~~~~la~----~g~~v~gvD~S~ 88 (292)
T d1xvaa_ 25 EAARVWQLYIGDTRSRTAEYKAWLL----GLLRQH--------GCHRVLDVACGTGVDSIMLVE----EGFSVTSVDASD 88 (292)
T ss_dssp HHHHHHHHHHHTTCCBCHHHHHHHH----HHHHHT--------TCCEEEESSCTTSHHHHHHHH----TTCEEEEEESCH
T ss_pred hHHHHHHHHhcchhhhHHHHHHHHH----HHhhhc--------CCCEEEEecCCCcHHHHHHHH----cCCeeeeccCch
Confidence 5567888776643322222233332 233322 267999999999999999998 678999999999
Q ss_pred HHHHHHHhccccCCCc-----eEEEEecCCCCCCCCCCCCCcceEEEehh-hhhccC-----hhHHHHHHHHHHHhcCCC
Q psy11741 144 NAVNILKEHEEYKPDR-----CHAFVCDVTSEDWNPPFAPESLDIVLLIF-VLDAIN-----PNKMQHVINQVYKYLKPG 212 (352)
Q Consensus 144 ~~l~~a~~~~~~~~~~-----v~~~~~d~~~~~~~~~~~~~~fD~V~~~~-~l~~~~-----~~~~~~~l~~~~~~Lkpg 212 (352)
.||+.|+++....... ..+...|+.......+ ..++||+|+|.+ +++|+. .++...+|++++++||||
T Consensus 89 ~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 167 (292)
T d1xvaa_ 89 KMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 167 (292)
T ss_dssp HHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC
Confidence 9999998876543322 2334444332111122 256899999864 788873 257889999999999999
Q ss_pred EEEEEEeCC
Q psy11741 213 GMVLFRDYG 221 (352)
Q Consensus 213 G~l~~~~~~ 221 (352)
|+|++...+
T Consensus 168 G~li~~~~~ 176 (292)
T d1xvaa_ 168 GLLVIDHRN 176 (292)
T ss_dssp EEEEEEEEC
T ss_pred cEEEEeecC
Confidence 999997654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=1.5e-18 Score=148.04 Aligned_cols=123 Identities=14% Similarity=0.171 Sum_probs=100.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|+++++..+.++.+.++|+.. ..+.++||+|++
T Consensus 120 ~g~~VLDiGcGsG~l~i~aa~----~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-----~~~~~~fD~V~a 190 (254)
T d2nxca1 120 PGDKVLDLGTGSGVLAIAAEK----LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-----ALPFGPFDLLVA 190 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHH----TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-----HGGGCCEEEEEE
T ss_pred ccCEEEEcccchhHHHHHHHh----cCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-----cccccccchhhh
Confidence 488999999999999988877 66799999999999999999988777778889988753 234679999998
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCCC
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAGF 266 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf 266 (352)
+... ..+..++..+.++|||||+++++.+.. ...+++.+.++++||
T Consensus 191 ni~~-----~~l~~l~~~~~~~LkpGG~lilSgil~-----------------------------~~~~~v~~~~~~~Gf 236 (254)
T d2nxca1 191 NLYA-----ELHAALAPRYREALVPGGRALLTGILK-----------------------------DRAPLVREAMAGAGF 236 (254)
T ss_dssp ECCH-----HHHHHHHHHHHHHEEEEEEEEEEEEEG-----------------------------GGHHHHHHHHHHTTC
T ss_pred cccc-----ccHHHHHHHHHHhcCCCcEEEEEecch-----------------------------hhHHHHHHHHHHCCC
Confidence 6443 445678899999999999999974321 235678899999999
Q ss_pred ceEEee
Q psy11741 267 VEKQNL 272 (352)
Q Consensus 267 ~~~~~~ 272 (352)
.+++..
T Consensus 237 ~~~~~~ 242 (254)
T d2nxca1 237 RPLEEA 242 (254)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987653
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.75 E-value=4.1e-18 Score=143.47 Aligned_cols=141 Identities=17% Similarity=0.188 Sum_probs=107.6
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+..++.+|||+|||+|..+..+++.. ++..|+|+|+|+.|++.+++++... +++..+..|.... .++.+..+|+
T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la~~~--~~g~V~aVDiS~~~i~~a~~~a~~~-~ni~~i~~d~~~~---~~~~~~~~~v 144 (230)
T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVADIA--DKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKP---QEYANIVEKV 144 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHT--TTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCG---GGGTTTCCCE
T ss_pred CCCCCCEEEEeCEEcCHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhhh-cccceEEEeeccC---ccccccccee
Confidence 35568999999999999999999976 6679999999999999999887643 6788888888753 3345667888
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
+++...+++. ++...++.++++.|||||.+++....... +.........++..+.|++
T Consensus 145 ~~i~~~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~~~~--------------------d~~~~~~~~~~e~~~~L~~ 202 (230)
T d1g8sa_ 145 DVIYEDVAQP--NQAEILIKNAKWFLKKGGYGMIAIKARSI--------------------DVTKDPKEIFKEQKEILEA 202 (230)
T ss_dssp EEEEECCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGT--------------------CSSSCHHHHHHHHHHHHHH
T ss_pred EEeeccccch--HHHHHHHHHHHHhcccCceEEEEeecccc--------------------CCCCCHHHHHHHHHHHHHH
Confidence 7777777776 78899999999999999999987532110 0000001224677889999
Q ss_pred CCCceEEee
Q psy11741 264 AGFVEKQNL 272 (352)
Q Consensus 264 ~Gf~~~~~~ 272 (352)
+||++++..
T Consensus 203 aGF~ive~i 211 (230)
T d1g8sa_ 203 GGFKIVDEV 211 (230)
T ss_dssp HTEEEEEEE
T ss_pred cCCEEEEEe
Confidence 999988753
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=8.5e-18 Score=145.62 Aligned_cols=102 Identities=24% Similarity=0.443 Sum_probs=88.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.|+++. +++.+.++|+. .+++++++||+|++.
T Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~--~~~~~~giD~s~~~~~~a~~~~----~~~~~~~~d~~----~l~~~~~sfD~v~~~ 154 (268)
T d1p91a_ 85 ATAVLDIGCGEGYYTHAFADAL--PEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSH----RLPFSDTSMDAIIRI 154 (268)
T ss_dssp CCEEEEETCTTSTTHHHHHHTC--TTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTT----SCSBCTTCEEEEEEE
T ss_pred CCEEEEeCCCCcHHHHHHHHHC--CCCEEEEecchHhhhhhhhccc----ccccceeeehh----hccCCCCCEEEEeec
Confidence 7899999999999999999976 7889999999999999998764 56899999997 677889999999998
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhH
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQL 228 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 228 (352)
++++++ +++.|+|||||++++.++++.....+
T Consensus 155 ~~~~~~---------~e~~rvLkpgG~l~~~~p~~~~l~el 186 (268)
T d1p91a_ 155 YAPCKA---------EELARVVKPGGWVITATPGPRHLMEL 186 (268)
T ss_dssp SCCCCH---------HHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred CCHHHH---------HHHHHHhCCCcEEEEEeeCCcchHHH
Confidence 877663 56899999999999998877654443
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=3.3e-17 Score=140.71 Aligned_cols=183 Identities=18% Similarity=0.247 Sum_probs=128.8
Q ss_pred HhhccccCCCHHHHHHhhHHhhhhHH-----------HHhhhcccccccchhhHHHhhhhhhcccCCCC-------CCCC
Q psy11741 45 VENNSVLQIDKNLIQTLNEDVAKNWD-----------AFYNVHQNRFFKDRHWLFTEFTEIIEPLSSTK-------TDTC 106 (352)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~yw~-----------~~y~~~~~~f~~~~~~~~~~~~~l~~~~~~~~-------~~~~ 106 (352)
+..+...++++...+.|.....+.-. .||+. .|..+... ++|+++||. ....
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~rr~~g~PlqYI~G~~~F~~~---~~~v~~~V-------lIPRpeTE~lv~~~l~~~~~ 107 (274)
T d2b3ta1 38 ILAFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSL---PLFVSPAT-------LIPRPDTECLVEQALARLPE 107 (274)
T ss_dssp HHHTTTCBCCHHHHHHHHHHHHHHHTTCCHHHHSCEEEETTE---EEECCTTS-------CCCCTTHHHHHHHHHHHSCS
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHhcCcChhhhcCcEEEeee---EEEEeccc-------cccccchhhhhhhHhhhhcc
Confidence 34445566777777777766554422 34433 34444433 555555440 0223
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.+.+|||+|||+|.++..++... +..+|+|+|+|+.+++.|++|+...+ .++.++++|+.+. .++++||+|+
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~--p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~-----~~~~~fDlIv 180 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASER--PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-----LAGQQFAMIV 180 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHC--TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-----GTTCCEEEEE
T ss_pred cccceeeeehhhhHHHHHHHhhC--CcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc-----cCCCceeEEE
Confidence 46789999999999999999987 88999999999999999999987654 4799999998642 3467999999
Q ss_pred ehh-------------hhhccC----------hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceee
Q psy11741 186 LIF-------------VLDAIN----------PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYA 242 (352)
Q Consensus 186 ~~~-------------~l~~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
|+= ++.+-+ ......+++.+.++|+|||.+++. ++.
T Consensus 181 sNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE-ig~-------------------- 239 (274)
T d2b3ta1 181 SNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE-HGW-------------------- 239 (274)
T ss_dssp ECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE-CCS--------------------
T ss_pred ecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE-ECc--------------------
Confidence 941 111100 134667889999999999999994 332
Q ss_pred cCCCeeeeccCHHHHHHHHHhCCCceEEeeee
Q psy11741 243 RGDGTLVYFFTREEVKTMFESAGFVEKQNLID 274 (352)
Q Consensus 243 ~~~~~~~~~~~~~~~~~ll~~~Gf~~~~~~~~ 274 (352)
-..+.+.+++++.||..+++..|
T Consensus 240 ---------~q~~~v~~~l~~~gf~~i~~~kD 262 (274)
T d2b3ta1 240 ---------QQGEAVRQAFILAGYHDVETCRD 262 (274)
T ss_dssp ---------SCHHHHHHHHHHTTCTTCCEEEC
T ss_pred ---------hHHHHHHHHHHHCCCCeEEEEEC
Confidence 23567889999999987766543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=5.5e-18 Score=143.44 Aligned_cols=104 Identities=14% Similarity=0.224 Sum_probs=86.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe-
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL- 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~- 186 (352)
+.+|||||||+|..+..+++. .+.+++|||+|+.|++.|+++......++.+...|+... ..++++++||.|+.
T Consensus 54 g~~VLdIGcG~G~~a~~~a~~---~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~i~fD 128 (229)
T d1zx0a1 54 GGRVLEVGFGMAIAASKVQEA---PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV--APTLPDGHFDGILYD 128 (229)
T ss_dssp CEEEEEECCTTSHHHHHHHTS---CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH--GGGSCTTCEEEEEEC
T ss_pred CCeEEEeeccchHHHHHHHHc---CCCeEEEeCCCHHHHHHHHHHhhhccccccccccccccc--ccccccccccceeec
Confidence 789999999999999999885 446899999999999999999887777788888776532 22355788998874
Q ss_pred ----hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 ----IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ----~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
...++|+ .+...++++++++|||||+|++.
T Consensus 129 ~~~~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 129 TYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccccc--cCHHHHHHHHHHHcCCCcEEEEE
Confidence 5666776 78899999999999999999874
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.69 E-value=6.7e-17 Score=132.14 Aligned_cols=102 Identities=18% Similarity=0.283 Sum_probs=85.3
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
.++.+|||+|||+|.++..+++ .+.+|+|+|+++.|++.|+++++..+ .+++++++|+.+ .......||.
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~----~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~----~~~~~~~~D~ 103 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAG----RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE----ALCKIPDIDI 103 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHT----TSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH----HHTTSCCEEE
T ss_pred CCCCEEEEEECCeEcccccccc----cceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh----cccccCCcCE
Confidence 3489999999999999999987 55689999999999999999987654 689999999864 2334578999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|++....++ ...+++.+.++|||||++++...
T Consensus 104 v~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 104 AVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEeCcccc-----chHHHHHHHHHhCcCCEEEEEee
Confidence 998765544 46789999999999999998654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=6.1e-16 Score=127.23 Aligned_cols=104 Identities=15% Similarity=0.218 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC---CCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK---PDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
.++.+|||+|||+|.++..+++ .+.+|+++|+|+.+++.|++++... ..++.+..+|+.+ ++++++||
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~----~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-----~~~~~~fD 121 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALAD----EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-----NVKDRKYN 121 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGG----GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-----TCTTSCEE
T ss_pred CCCCeEEEEeecCChhHHHHHh----hccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-----hhccCCce
Confidence 3488999999999999999988 4458999999999999999987643 2468999999864 23478999
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|++...+++. .+....+++.+.++|+|||.+++..
T Consensus 122 ~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 122 KIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence 99998877654 3446789999999999999988754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.64 E-value=2.7e-16 Score=133.22 Aligned_cols=126 Identities=15% Similarity=0.137 Sum_probs=100.1
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
...++.+|||+|||+|.++..+++... +..+|+++|.++.+++.|+++++.. ..++.+..+|+.+. +++++|
T Consensus 82 ~i~pG~rVLEiG~GsG~lt~~la~~v~-~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-----~~~~~f 155 (250)
T d1yb2a1 82 GLRPGMDILEVGVGSGNMSSYILYALN-GKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-----ISDQMY 155 (250)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHT-TSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-----CCSCCE
T ss_pred CCCCcCEEEEeeeeCcHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-----ccccee
Confidence 456799999999999999999998765 6779999999999999999998653 47899999998752 346789
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHH
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 261 (352)
|.|++. + .++..++..+.++|||||++++..++. -..+.....+
T Consensus 156 D~V~ld-----~--p~p~~~l~~~~~~LKpGG~lv~~~P~i-----------------------------~Qv~~~~~~l 199 (250)
T d1yb2a1 156 DAVIAD-----I--PDPWNHVQKIASMMKPGSVATFYLPNF-----------------------------DQSEKTVLSL 199 (250)
T ss_dssp EEEEEC-----C--SCGGGSHHHHHHTEEEEEEEEEEESSH-----------------------------HHHHHHHHHS
T ss_pred eeeeec-----C--CchHHHHHHHHHhcCCCceEEEEeCCc-----------------------------ChHHHHHHHH
Confidence 999862 3 455678999999999999999865431 1234556667
Q ss_pred HhCCCceEEe
Q psy11741 262 ESAGFVEKQN 271 (352)
Q Consensus 262 ~~~Gf~~~~~ 271 (352)
++.||..++.
T Consensus 200 ~~~gf~~i~~ 209 (250)
T d1yb2a1 200 SASGMHHLET 209 (250)
T ss_dssp GGGTEEEEEE
T ss_pred HHCCCceeEE
Confidence 7889987654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.63 E-value=2.8e-16 Score=134.04 Aligned_cols=106 Identities=18% Similarity=0.263 Sum_probs=90.0
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc----CCCceEEEEecCCCCCCCCCCCCC
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY----KPDRCHAFVCDVTSEDWNPPFAPE 179 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~ 179 (352)
...|+.+|||+|||+|.++..||.... +..+|+++|+++++++.|+++++. ...++.+.++|+.+ .+++++
T Consensus 93 ~i~PG~~VLE~G~GsG~lt~~La~~vg-p~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~----~~~~~~ 167 (264)
T d1i9ga_ 93 DIFPGARVLEAGAGSGALTLSLLRAVG-PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD----SELPDG 167 (264)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG----CCCCTT
T ss_pred CCCCCCEEEecCcCCcHHHHHHHHhhC-CCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc----ccccCC
Confidence 455699999999999999999999876 777999999999999999998764 24789999999874 456689
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+||.|++ ++ .++..++..+.++|||||.+++..++
T Consensus 168 ~fDaV~l-----dl--p~P~~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 168 SVDRAVL-----DM--LAPWEVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp CEEEEEE-----ES--SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CcceEEE-----ec--CCHHHHHHHHHhccCCCCEEEEEeCc
Confidence 9999985 45 56678999999999999999987644
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.63 E-value=5.2e-16 Score=128.65 Aligned_cols=109 Identities=16% Similarity=0.211 Sum_probs=84.2
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
...|+.+|||+|||+|..+..+++.. +..+|+|+|+|+.|++.|+++++.. .++.++..|+..... .......+|+
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v--~~g~V~gvDis~~~i~~a~~~a~~~-~ni~~i~~d~~~~~~-~~~~~~~vd~ 128 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIV--DEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWK-YSGIVEKVDL 128 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHT--TTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGG-TTTTCCCEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhc--cCCeEEEEeCCHHHHHHHHHHhhcc-CCceEEEeeccCccc-cccccceEEE
Confidence 45568999999999999999999987 5559999999999999999887654 589999999875321 1111233454
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|++ .+.|. .+...+++++.++|||||.+++...
T Consensus 129 v~~--~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 129 IYQ--DIAQK--NQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp EEE--CCCST--THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEe--cccCh--hhHHHHHHHHHHHhccCCeEEEEEE
Confidence 443 34444 6788999999999999999998753
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.61 E-value=1.5e-15 Score=125.09 Aligned_cols=108 Identities=14% Similarity=0.230 Sum_probs=88.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
...|||||||+|..+..+|+.. |+..++|+|+++.++..|.++.... ..|+.++++|+.... ..++++++|.|++
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~--p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~--~~~~~~~~d~v~i 105 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQN--PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT--DVFEPGEVKRVYL 105 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHC--TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH--HHCCTTSCCEEEE
T ss_pred CceEEEEEecCcHHHHHHHHhC--CCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhh--cccCchhhhcccc
Confidence 4479999999999999999987 8899999999999999998887654 368999999987421 1256889999998
Q ss_pred hhhhhccChhH------HHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAINPNK------MQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+...+....+ ...+|+.++++|||||.|++.+
T Consensus 106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 87766552221 1478999999999999998864
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=1.3e-15 Score=130.68 Aligned_cols=127 Identities=16% Similarity=0.201 Sum_probs=100.8
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
...++.+|||+|||+|.++..+|+... ++.+|+++|+++.+++.|+++++..+ .++.+...|+.. .+....|
T Consensus 100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~-~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-----~~~~~~~ 173 (266)
T d1o54a_ 100 DVKEGDRIIDTGVGSGAMCAVLARAVG-SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-----GFDEKDV 173 (266)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTT-TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-----CCSCCSE
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-----cccccce
Confidence 455699999999999999999998765 67899999999999999999987643 577888888753 2346779
Q ss_pred eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHH
Q psy11741 182 DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMF 261 (352)
Q Consensus 182 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 261 (352)
|.|+. ++ .++..+++++.++|||||.+++..++. -+.+++...+
T Consensus 174 D~V~~-----d~--p~p~~~l~~~~~~LKpGG~lv~~~P~~-----------------------------~Qv~~~~~~l 217 (266)
T d1o54a_ 174 DALFL-----DV--PDPWNYIDKCWEALKGGGRFATVCPTT-----------------------------NQVQETLKKL 217 (266)
T ss_dssp EEEEE-----CC--SCGGGTHHHHHHHEEEEEEEEEEESSH-----------------------------HHHHHHHHHH
T ss_pred eeeEe-----cC--CCHHHHHHHHHhhcCCCCEEEEEeCcc-----------------------------cHHHHHHHHH
Confidence 98864 45 567789999999999999999865431 1245667778
Q ss_pred HhCCCceEEee
Q psy11741 262 ESAGFVEKQNL 272 (352)
Q Consensus 262 ~~~Gf~~~~~~ 272 (352)
++.||..++..
T Consensus 218 ~~~gF~~i~~~ 228 (266)
T d1o54a_ 218 QELPFIRIEVW 228 (266)
T ss_dssp HHSSEEEEEEE
T ss_pred HHCCceeEEEE
Confidence 89999877653
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=1.9e-15 Score=125.84 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=84.2
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||||||+|..+..+++.++ +...|+++|+++.+++.|+++.... ..++.+.++|..+ ....+++||+
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~-~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~----~~~~~~~fD~ 147 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVG-EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY----GVPEFSPYDV 147 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG----CCGGGCCEEE
T ss_pred ccccceEEEecCccchhHHHHHHHhC-CCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHH----ccccccchhh
Confidence 44589999999999999999998775 5678999999999999999998764 3678899998874 2234678999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|++..++++++. .+.+.|||||+|++..
T Consensus 148 I~~~~~~~~~p~--------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 148 IFVTVGVDEVPE--------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp EEECSBBSCCCH--------HHHHHEEEEEEEEEEB
T ss_pred hhhhccHHHhHH--------HHHHhcCCCcEEEEEE
Confidence 999999888732 3567899999998853
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=1.2e-14 Score=121.45 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=88.2
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+..++.+|||+|||+|.++..+++..+ +..+|+|+|+|+.|++.++++++.. .++..+..|+.... ..+.....+|+
T Consensus 70 ~i~pG~~VLDlGaGsG~~t~~la~~VG-~~G~V~aVD~s~~~l~~a~~~a~~~-~~~~~i~~d~~~~~-~~~~~~~~vD~ 146 (227)
T d1g8aa_ 70 PIKPGKSVLYLGIASGTTASHVSDIVG-WEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPE-EYRALVPKVDV 146 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGG-GGTTTCCCEEE
T ss_pred ccCCCCEEEEeccCCCHHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHHhc-CCceEEEEECCCcc-cccccccceEE
Confidence 455699999999999999999999876 6779999999999999999887643 56788888886532 22333467888
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|++. +.+. ++...+++++.+.|||||.+++...
T Consensus 147 i~~d--~~~~--~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 147 IFED--VAQP--TQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp EEEC--CCST--THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEE--cccc--chHHHHHHHHHHhcccCCeEEEEEE
Confidence 8763 3333 6788899999999999999998753
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.55 E-value=6.8e-15 Score=124.63 Aligned_cols=147 Identities=15% Similarity=0.151 Sum_probs=104.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|||||||+|.++..+++++ |+.+++.+|+. ..++.+. ...+++++.+|+.+ .. + ..|++++.
T Consensus 82 ~~~vlDiGGG~G~~~~~l~~~~--P~l~~~v~Dlp-~vi~~~~-----~~~ri~~~~gd~~~---~~--p--~~D~~~l~ 146 (244)
T d1fp1d2 82 ISTLVDVGGGSGRNLELIISKY--PLIKGINFDLP-QVIENAP-----PLSGIEHVGGDMFA---SV--P--QGDAMILK 146 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC--TTCEEEEEECH-HHHTTCC-----CCTTEEEEECCTTT---CC--C--CEEEEEEE
T ss_pred CcEEEEecCCCcHHHHHHHHHC--CCCeEEEecch-hhhhccC-----CCCCeEEecCCccc---cc--c--cceEEEEe
Confidence 5789999999999999999988 99999999984 3443221 23679999999874 22 2 45999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhh--HhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhCC
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQ--LRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESAG 265 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 265 (352)
.++|++++++...+|+++++.|+|||.+++.+...+.... ........+.........+ ...+.+++..+++++|
T Consensus 147 ~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g---~ert~~e~~~ll~~AG 223 (244)
T d1fp1d2 147 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGG---RERTEKQYEKLSKLSG 223 (244)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSC---CCEEHHHHHHHHHHTT
T ss_pred hhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCC---cCCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999998753221000 0000000000000001111 1257999999999999
Q ss_pred CceEEee
Q psy11741 266 FVEKQNL 272 (352)
Q Consensus 266 f~~~~~~ 272 (352)
|+.+++.
T Consensus 224 F~~v~v~ 230 (244)
T d1fp1d2 224 FSKFQVA 230 (244)
T ss_dssp CSEEEEE
T ss_pred CCceEEE
Confidence 9998764
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.54 E-value=2.5e-14 Score=117.71 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=86.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
...|||||||+|.++..+|+.. |...++|+|+++.++..|.++... ...|+.+..+|+.... ..+++.++|.|++
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~--p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~--~~~~~~~~~~i~i 107 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQN--PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT--DYFEDGEIDRLYL 107 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHC--TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG--GTSCTTCCSEEEE
T ss_pred CCeEEEEeccCCHHHHHHHHHC--CCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh--hhccCCceehhcc
Confidence 4479999999999999999987 889999999999999999887765 3478999999987532 2356889999988
Q ss_pred hhhhhccChhH------HHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAINPNK------MQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+...+..... ...+|+.+.++|||||.|++.+
T Consensus 108 ~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 108 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 66543331111 2578999999999999998864
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.2e-14 Score=121.68 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC------CCceEEEEecCCCCCCCCCCCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK------PDRCHAFVCDVTSEDWNPPFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~ 179 (352)
.++.+|||||||+|..+..+++..+ +..+|+++|+++.+++.|+++++.. ..++.+..+|... ...+.+
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~-~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~----~~~~~~ 149 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVG-CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM----GYAEEA 149 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG----CCGGGC
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhC-CCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc----ccchhh
Confidence 3588999999999999988888765 6779999999999999999887542 2578899999874 233467
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+||.|++..++++++ ..+.+.|||||+|++..
T Consensus 150 ~fD~I~~~~~~~~ip--------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 150 PYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp CEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEE
T ss_pred hhhhhhhhcchhhcC--------HHHHhhcCCCcEEEEEE
Confidence 899999999888873 23678899999999864
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.7e-14 Score=126.70 Aligned_cols=107 Identities=18% Similarity=0.234 Sum_probs=83.0
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc------------CCCceEEEEecCCCCC
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY------------KPDRCHAFVCDVTSED 171 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~------------~~~~v~~~~~d~~~~~ 171 (352)
...++.+|||+|||+|.++..||+..+ +..+|+++|+++.+++.|+++++. ...++.+...|+.+..
T Consensus 95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg-~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~ 173 (324)
T d2b25a1 95 DINPGDTVLEAGSGSGGMSLFLSKAVG-SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 173 (324)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred CCCCCCEEEEecccccHHHHHHHHHhC-CCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc
Confidence 345699999999999999999999876 677999999999999999988652 2468999999987542
Q ss_pred CCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 172 WNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 172 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
..+++..||.|++ .+ .++..++.++.++|||||+|++..+
T Consensus 174 --~~~~~~~fD~V~L-----D~--p~P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 174 --EDIKSLTFDAVAL-----DM--LNPHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp ---------EEEEEE-----CS--SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred --cccCCCCcceEee-----cC--cCHHHHHHHHHHhccCCCEEEEEeC
Confidence 2344678999985 23 3455689999999999999998643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.50 E-value=1e-13 Score=117.32 Aligned_cols=142 Identities=20% Similarity=0.204 Sum_probs=103.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|||||||+|..+..+++++ |+.++++.|.. ..++.+. ...+++++.+|+.+. . ..+|++++.
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~--P~l~~~v~Dlp-~vi~~~~-----~~~rv~~~~gD~f~~---~----p~aD~~~l~ 145 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETF--PKLKCIVFDRP-QVVENLS-----GSNNLTYVGGDMFTS---I----PNADAVLLK 145 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC--TTCEEEEEECH-HHHTTCC-----CBTTEEEEECCTTTC---C----CCCSEEEEE
T ss_pred ceEEEEecCCccHHHHHHHHhC--CCCeEEEecCH-HHHHhCc-----ccCceEEEecCcccC---C----CCCcEEEEE
Confidence 4689999999999999999998 89999999984 4444322 236799999998742 1 257999999
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCC---EEEEEEeCCCCchh------hHhhhcCccccCceeecCCCeeeeccCHHHHH
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPG---GMVLFRDYGRYDLV------QLRFKKGRCLQDNFYARGDGTLVYFFTREEVK 258 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (352)
.++|++++++..++|+++++.|+|| |++++.+...++.. ....... -.... ..+ ...+.+++.
T Consensus 146 ~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~d----l~m~~-~~G---~ert~~e~~ 217 (244)
T d1fp2a2 146 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMD----VNMAC-LNG---KERNEEEWK 217 (244)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHH----HHGGG-GTC---CCEEHHHHH
T ss_pred eecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHH----HHHHh-CCC---cCCCHHHHH
Confidence 9999999999999999999999998 77777664322110 0000000 00000 111 236789999
Q ss_pred HHHHhCCCceEEee
Q psy11741 259 TMFESAGFVEKQNL 272 (352)
Q Consensus 259 ~ll~~~Gf~~~~~~ 272 (352)
++++++||+.+++.
T Consensus 218 ~ll~~AGf~~~~i~ 231 (244)
T d1fp2a2 218 KLFIEAGFQHYKIS 231 (244)
T ss_dssp HHHHHTTCCEEEEE
T ss_pred HHHHHcCCceEEEE
Confidence 99999999998763
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.3e-14 Score=128.59 Aligned_cols=106 Identities=13% Similarity=0.240 Sum_probs=83.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc----------CCCceEEEEecCCCCCCCC
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY----------KPDRCHAFVCDVTSEDWNP 174 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~----------~~~~v~~~~~d~~~~~~~~ 174 (352)
..++.+|||+|||+|.++..+++.. +..+++|||+|+.+++.|+++.+. ...++.++++|+.+ +
T Consensus 149 l~~~~~vlD~GcG~G~~~~~~a~~~--~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~----~ 222 (328)
T d1nw3a_ 149 MTDDDLFVDLGSGVGQVVLQVAAAT--NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS----E 222 (328)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHC--CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS----H
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc----c
Confidence 4458899999999999999998875 556899999999999999876442 23579999999973 3
Q ss_pred CCCCCcc--eEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 175 PFAPESL--DIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 175 ~~~~~~f--D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++.+..+ |+|++.. +.|. +++...|.++.+.|||||.+++..
T Consensus 223 ~~~~~~~~advi~~~~-~~f~--~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 223 EWRERIANTSVIFVNN-FAFG--PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHHHHHCSEEEECC-TTTC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccccCcceEEEEcc-eecc--hHHHHHHHHHHHhCCCCcEEEEec
Confidence 3333334 6677644 4455 788899999999999999998754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.48 E-value=1.1e-13 Score=113.09 Aligned_cols=108 Identities=10% Similarity=0.181 Sum_probs=78.9
Q ss_pred CCeEEEEcCCccccHHHHH----hhc--CCCCeEEEEEeCCHHHHHHHHhccc------------------cCC------
Q psy11741 108 TKNILEIGCGVGNSVFPIV----EHC--KNDNVFVYGCDFSENAVNILKEHEE------------------YKP------ 157 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~----~~~--~~~~~~v~gvD~s~~~l~~a~~~~~------------------~~~------ 157 (352)
..+|+++|||+|.-...+| +.. .....+++|+|+|+.+++.|++..- ...
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~ 104 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 104 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence 6799999999998554443 221 1134689999999999999985420 000
Q ss_pred --------CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 158 --------DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 158 --------~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
..+.+...+... ..+.+.+.||+|+|.+++.+++++...++++++++.|+|||+|++.
T Consensus 105 ~~~~~~~~~~v~~~~~~~~~---~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 105 VRVRQELANYVEFSSVNLLE---KQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEECHHHHTTEEEEECCTTC---SSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eehHHHHHHHHHHhhhhccc---cccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 123344444442 1223357899999999999999999999999999999999999985
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=6e-14 Score=124.64 Aligned_cols=102 Identities=23% Similarity=0.359 Sum_probs=82.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+++|||||||+|.++..+++. ...+|+|+|.|+ ++..|+++... ...++.++.+|+. .+++++++||+|+
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~---Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~----~l~~~~~~~D~i~ 110 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKH---GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLE----DVHLPFPKVDIII 110 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHT---CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTT----TSCCSSSCEEEEE
T ss_pred cCEEEEeCCCCCHHHHHHHHh---CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehh----hccCcccceeEEE
Confidence 789999999999999988884 234899999997 66777776554 3467999999987 4556678999999
Q ss_pred ehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 186 LIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 186 ~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
+..+.+++ ....+..++..+.++|||||.++-
T Consensus 111 se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 97766655 346778889999999999999873
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.2e-13 Score=120.14 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=80.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-CCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-KPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+++|||||||+|.++..+|++. ..+|+|+|.|+.|...++..... ...++.++.+|+. .++.+.++||+|++
T Consensus 36 ~~~VLDiGcG~G~lsl~aa~~G---a~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~----~l~~~~~~~D~Ivs 108 (311)
T d2fyta1 36 DKVVLDVGCGTGILSMFAAKAG---AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIE----EVHLPVEKVDVIIS 108 (311)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT---CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT----TSCCSCSCEEEEEE
T ss_pred cCEEEEECCCCCHHHHHHHHcC---CCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHH----HhcCccccceEEEE
Confidence 7899999999999999888842 24899999999887654433322 3478999999988 45556789999999
Q ss_pred hhhhhccC-hhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 187 IFVLDAIN-PNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 187 ~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
..+.+++. ...+..++....++|+|||.++.
T Consensus 109 e~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 109 EWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 76666653 34567788888899999999874
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=1.5e-13 Score=121.37 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=80.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+++|||||||+|.++..+++. ...+|+|+|.|+.+ ..++++... ...++.++++|+. .++.+.++||+|+
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~---Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~----~~~~~~~~~D~iv 105 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKA---GARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVE----EVELPVEKVDIII 105 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHT---TCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTT----TCCCSSSCEEEEE
T ss_pred cCEEEEEecCCcHHHHHHHHh---CCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHH----HcccccceeEEEe
Confidence 789999999999999988884 22479999999865 455454433 3467999999987 4555678999999
Q ss_pred ehhhhhcc-ChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 186 LIFVLDAI-NPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 186 ~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
+..+.+++ ....+..++..+.++|||||.++.
T Consensus 106 s~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 106 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 97666655 335688999999999999999874
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.43 E-value=7.2e-14 Score=118.53 Aligned_cols=146 Identities=15% Similarity=0.167 Sum_probs=102.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
..+|||||||+|.++..+++++ |+.+++++|+.+. ++.+. ...++.+..+|+.+ +.| ..|++++.
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~--P~l~~~v~Dlp~v-i~~~~-----~~~r~~~~~~d~~~---~~P----~ad~~~l~ 146 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKY--PTIKGINFDLPHV-IEDAP-----SYPGVEHVGGDMFV---SIP----KADAVFMK 146 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC--TTSEEEEEECTTT-TTTCC-----CCTTEEEEECCTTT---CCC----CCSCEECS
T ss_pred CcEEEEecCCCcHHHHHHHHHC--CCCeEEEcccHHh-hhhcc-----cCCceEEecccccc---cCC----CcceEEEE
Confidence 5689999999999999999998 9999999999653 32221 23679999999875 233 25778889
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCch----hhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHh
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDL----VQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFES 263 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 263 (352)
.++|..+.++...+|++++++|+|||.+++.+...+.. ...... ..+.........+. ...+.+++.+++++
T Consensus 147 ~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~--~~~d~~ml~~~~~g--~ert~~e~~~ll~~ 222 (243)
T d1kyza2 147 WICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGV--VHIDVIMLAHNPGG--KERTQKEFEDLAKG 222 (243)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHH--HHHHHHHHHHCSSC--CCEEHHHHHHHHHH
T ss_pred EEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHH--HHHHHHHHhhCCCC--CcCCHHHHHHHHHH
Confidence 99999999999999999999999999988876532110 000000 00000000000011 12579999999999
Q ss_pred CCCceEEee
Q psy11741 264 AGFVEKQNL 272 (352)
Q Consensus 264 ~Gf~~~~~~ 272 (352)
+||+.+++.
T Consensus 223 AGf~~vkv~ 231 (243)
T d1kyza2 223 AGFQGFKVH 231 (243)
T ss_dssp HCCSCEEEE
T ss_pred cCCCcEEEE
Confidence 999999764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.42 E-value=5.6e-14 Score=123.81 Aligned_cols=110 Identities=16% Similarity=0.081 Sum_probs=84.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||++||+|.++..++. .+.+|+++|+|+.+++.|++++...+ .+++++++|+.+....++...++||+|++
T Consensus 146 g~rVLDl~~gtG~~s~~~a~----g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLAL----GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHH----HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeeeccCCCCcHHHHHHHh----cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 78999999999999998876 56799999999999999999988755 57899999986421112334578999998
Q ss_pred hhhhhccC-------hhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 187 IFVLDAIN-------PNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 187 ~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.--....+ ..+...++..+.++|+|||.|++.+.+
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 42110000 145667889999999999999997655
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.41 E-value=1.9e-13 Score=113.62 Aligned_cols=97 Identities=22% Similarity=0.263 Sum_probs=78.7
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
..++.+|||||||+|..+..|++. ..+|+++|+++.+++.|+++.... .++.+..+|.... .+ ..++||.|
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l----~~~V~aiE~~~~~~~~A~~~~~~~-~nv~~~~~d~~~g---~~-~~~pfD~I 138 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEI----VDKVVSVEINEKMYNYASKLLSYY-NNIKLILGDGTLG---YE-EEKPYDRV 138 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH----SSEEEEEESCHHHHHHHHHHHTTC-SSEEEEESCGGGC---CG-GGCCEEEE
T ss_pred hcccceEEEecCCCCHHHHHHHHH----hcccccccccHHHHHHHHHHHhcc-cccccccCchhhc---ch-hhhhHHHH
Confidence 345889999999999999888884 458999999999999999886643 6899999998642 22 35789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
++..++.+++ ..+.+.|+|||+|++.
T Consensus 139 iv~~a~~~ip--------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 139 VVWATAPTLL--------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp EESSBBSSCC--------HHHHHTEEEEEEEEEE
T ss_pred Hhhcchhhhh--------HHHHHhcCCCCEEEEE
Confidence 9988887773 2356789999999985
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=1.9e-13 Score=120.86 Aligned_cols=112 Identities=20% Similarity=0.110 Sum_probs=84.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.|++++..++ .++++.++|+.+....++....+||+|
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~---ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIA---GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeeecccCcccchhhhhhhc---CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 3889999999999999998874 23489999999999999999987654 478999999864211122235789999
Q ss_pred EehhhhhccC-------hhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFVLDAIN-------PNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++.--....+ ..+...++..+.++|+|||+|++.+..
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9832111111 134567888899999999999997654
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.33 E-value=7e-12 Score=106.76 Aligned_cols=128 Identities=17% Similarity=0.233 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..+|+. ...+|+++|+|+.+++.++++++..+ .++++.++|+.+. + ..+.||.|
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~---~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~----~-~~~~~D~I 178 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVY---GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF----P-GENIADRI 178 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHH---TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC----C-CCSCEEEE
T ss_pred CccEEEECcceEcHHHHHHHHh---CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHh----c-cCCCCCEE
Confidence 3889999999999999999885 44589999999999999999987643 5699999999753 2 25789999
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCHHHHHHHHHhC
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTREEVKTMFESA 264 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 264 (352)
++... .....++..+.++|+|||++.+......... .....+.+..+....
T Consensus 179 i~~~p------~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~-----------------------~~~~~e~~~~~~~~~ 229 (260)
T d2frna1 179 LMGYV------VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM-----------------------PREPFETFKRITKEY 229 (260)
T ss_dssp EECCC------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT-----------------------TTTTHHHHHHHHHHT
T ss_pred EECCC------CchHHHHHHHHhhcCCCCEEEEEeccccccc-----------------------hhhHHHHHHHHHHHc
Confidence 87422 2223467778889999999877543211000 012356677888899
Q ss_pred CCceEEe
Q psy11741 265 GFVEKQN 271 (352)
Q Consensus 265 Gf~~~~~ 271 (352)
|+.+...
T Consensus 230 g~~v~~~ 236 (260)
T d2frna1 230 GYDVEKL 236 (260)
T ss_dssp TCEEEEE
T ss_pred CCceEEE
Confidence 9987544
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.31 E-value=1.7e-12 Score=113.85 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=82.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||++||+|.++..++.. ....|+++|+|+.+++.|++++..++ .+++++++|+.+....+....++||+|
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~---ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMG---GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHT---TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCceeecCCCCcHHHHHHHhC---CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 889999999999999887772 23379999999999999999986543 478999999864211111235689999
Q ss_pred Eehh--------hhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIF--------VLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~--------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
++.- .+... ..+...+++.+.++|+|||+|++.+..
T Consensus 222 i~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EECCCCC-----CCCCH-HHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEcChhhccchhHHHHH-HHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9831 01100 146778999999999999999997654
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.31 E-value=1.1e-12 Score=112.01 Aligned_cols=74 Identities=22% Similarity=0.306 Sum_probs=59.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
..+|||+|||+|..+..+++. +..+|+++|+|+.+++.|++|++..+ .++.+..+|..+ ..+...++||+|+
T Consensus 111 ~~~vld~g~GsG~i~~~la~~---~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~---~~~~~~~~fDlIV 184 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKF---SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE---PFKEKFASIEMIL 184 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHH---SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG---GGGGGTTTCCEEE
T ss_pred ccEEEEeeeeeehhhhhhhhc---ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccc---ccccccCcccEEE
Confidence 568999999999999888764 88899999999999999999988644 456777888764 2222347899999
Q ss_pred eh
Q psy11741 186 LI 187 (352)
Q Consensus 186 ~~ 187 (352)
++
T Consensus 185 sN 186 (271)
T d1nv8a_ 185 SN 186 (271)
T ss_dssp EC
T ss_pred Ec
Confidence 94
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=1.7e-12 Score=116.78 Aligned_cols=110 Identities=14% Similarity=0.247 Sum_probs=77.5
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC----------CCceEE-EEecCCCCCC
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK----------PDRCHA-FVCDVTSEDW 172 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~----------~~~v~~-~~~d~~~~~~ 172 (352)
...++.+|||||||+|..+..+|+.. +..+++|||+|+.|++.|+++.... ...+.+ ..++.....
T Consensus 213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~--g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~- 289 (406)
T d1u2za_ 213 QLKKGDTFMDLGSGVGNCVVQAALEC--GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN- 289 (406)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHH--CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH-
T ss_pred CCCCCCEEEeCCCCCcHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcc-
Confidence 45668999999999999999999876 5568999999999999999876421 122222 233332110
Q ss_pred CCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 173 NPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 173 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.....-..+|+|++.. +++. +++...|.++.+.|||||.++..+
T Consensus 290 ~~d~~~~~adVV~inn-~~f~--~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 290 RVAELIPQCDVILVNN-FLFD--EDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHHHGGGCSEEEECC-TTCC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccccccceEEEEec-ccCc--hHHHHHHHHHHHhcCCCcEEEEec
Confidence 0000013467787654 3444 788999999999999999998754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.30 E-value=5.2e-12 Score=105.00 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCC----CCeEEEEEeCCHHHHHHHHhcccc------CCCceEEEEecCCCCCCCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKN----DNVFVYGCDFSENAVNILKEHEEY------KPDRCHAFVCDVTSEDWNPP 175 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~----~~~~v~gvD~s~~~l~~a~~~~~~------~~~~v~~~~~d~~~~~~~~~ 175 (352)
.++.+|||||||+|..+..+++.++. ++.+|+++|.++.+++.|+++... ...++.+..+|.... .
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~---~- 154 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG---Y- 154 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC---C-
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccc---c-
Confidence 35889999999999999888876532 235899999999999999887542 125799999998753 1
Q ss_pred CCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 176 FAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 176 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+.+.||.|++..++.+++. .+.+.|||||++++..
T Consensus 155 ~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 155 PPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVPV 190 (223)
T ss_dssp GGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred ccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEEE
Confidence 23578999999998887732 3578999999998853
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.29 E-value=1.9e-12 Score=104.93 Aligned_cols=114 Identities=21% Similarity=0.356 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC-CCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP-PFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~fD~V 184 (352)
.++..+||++||+|..+..+++.+ ++.+|+|+|.++.|++.|+++....+.++.++++++.+....+ .+..++||.|
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~--~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgI 99 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHC--PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI 99 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHC--TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHhcC--CCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCccee
Confidence 348899999999999999999987 6789999999999999999998877788999999876421101 2335789999
Q ss_pred Eehhhh--hcc-----ChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFVL--DAI-----NPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~l--~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+....+ +.+ ........|..+.++|+|||.+++.++.
T Consensus 100 l~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 100 LMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp EEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred eeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 874332 111 1246678899999999999999987654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.28 E-value=2.1e-12 Score=111.80 Aligned_cols=108 Identities=15% Similarity=0.063 Sum_probs=79.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||++||+|.++..++. .|++|++||.|+.+++.|++|+..++ .+++++++|+.+.........++||+|
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~----~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAA----AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHH----TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCeEEEecCCCcHHHHHHHh----CCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 78999999999999999887 67799999999999999999976432 468999999864211111224689999
Q ss_pred Eeh---hhhh----cc-ChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLI---FVLD----AI-NPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~---~~l~----~~-~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
++. +... .. -..+...++..+.++|+|||.+++.+
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 982 1110 00 02455667788999999999766554
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.26 E-value=3.4e-12 Score=105.28 Aligned_cols=100 Identities=22% Similarity=0.223 Sum_probs=81.4
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
..++.+|||||||+|..+..+++.. +.+|+++|.++.+++.|++++...+ .|+.+.++|.... . ...+.||.
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~---g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g---~-~~~~pfD~ 148 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIV---KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG---F-PPKAPYDV 148 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHH---CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC---C-GGGCCEEE
T ss_pred cCccceEEEecCCCChhHHHHHHhh---CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccC---C-cccCccee
Confidence 3458899999999999999888764 3579999999999999999987644 8899999998753 2 23678999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|++..++.+++. .+.+.|+|||++++..
T Consensus 149 Iiv~~a~~~ip~--------~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 149 IIVTAGAPKIPE--------PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp EEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred EEeecccccCCH--------HHHHhcCCCCEEEEEE
Confidence 999988887732 2556799999999853
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.5e-10 Score=97.90 Aligned_cols=80 Identities=10% Similarity=0.049 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCC--CCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWN--PPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~--~~~~~~~fD 182 (352)
+..+|||+|||+|.++..|+... ++++++|+|+|+.+++.|+++++..+ .++.+...+....... ....+++||
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~--~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD 138 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATL--NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 138 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred ccceEEEeCCCchHHHHHHHHhC--CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence 35799999999999999999987 88999999999999999999987643 5677776654432111 122356899
Q ss_pred EEEehh
Q psy11741 183 IVLLIF 188 (352)
Q Consensus 183 ~V~~~~ 188 (352)
+|+|+=
T Consensus 139 ~ivsNP 144 (250)
T d2h00a1 139 FCMCNP 144 (250)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999953
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.21 E-value=6.9e-12 Score=98.20 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+|||+|||+|.++..++.+ ...+|+++|.++.+++.+++++...+ .+++++++|+... +....++||+|
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r---ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~---l~~~~~~fDiI 87 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR---GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA---IDCLTGRFDLV 87 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT---TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH---HHHBCSCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHh---Ccceeeeehhchhhhhhhhhhhhhcccccchhhhccccccc---cccccccccee
Confidence 3889999999999999988774 22499999999999999999987643 5689999998752 23346789999
Q ss_pred EehhhhhccChhHHHHHHHHHH--HhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVY--KYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~ 219 (352)
++.--.. .......+..+. ++|+|||.+++..
T Consensus 88 f~DPPy~---~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 88 FLDPPYA---KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp EECCSSH---HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred Eechhhc---cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 8842111 133445555554 5699999999864
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.18 E-value=3.6e-11 Score=99.34 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=81.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCC--CCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNP--PFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~--~~~~~~fD~ 183 (352)
+++|||+|||+|..+..+++.+. ++.+++++|+++.+++.|++++...+ .+++++.+|..+....+ ....++||+
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~-~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQ-PGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCC-TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCEEEEEccCchhHHHHHHHhCC-CccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 67999999999999999999875 57899999999999999998877633 57999999986521111 123568999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|++...-.. ......+.+..++|+|||++++.+.
T Consensus 136 ifiD~~~~~---~~~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 136 VFLDHWKDR---YLPDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp EEECSCGGG---HHHHHHHHHHTTCEEEEEEEEESCC
T ss_pred eeecccccc---cccHHHHHHHhCccCCCcEEEEeCc
Confidence 997532111 1223346677789999999888653
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.16 E-value=7.9e-12 Score=99.75 Aligned_cols=104 Identities=12% Similarity=0.114 Sum_probs=70.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+.+|||+|||+|.++..++. .+++++++|.|+.+++.++++++..+....+...+.............+||+|++.
T Consensus 42 g~~vLDl~~G~G~~~i~a~~----~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 42 RGRFLDPFAGSGAVGLEAAS----EGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHH----TTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeccccchhhhhhhh----ccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 78999999999999998877 66789999999999999999987644444444444321100112335789999984
Q ss_pred hhhhccChhHHHHHHHHH--HHhcCCCEEEEEEe
Q psy11741 188 FVLDAINPNKMQHVINQV--YKYLKPGGMVLFRD 219 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~ 219 (352)
=-.+ . +....+..+ ..+|+|||++++..
T Consensus 118 PPY~-~---~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 118 PPYA-M---DLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp CCTT-S---CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred cccc-c---CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 2111 1 112223333 25799999998864
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.13 E-value=1.2e-10 Score=95.20 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
.+++|||+|||+|.++..++.. ...+|+|+|+|+.+++.|++++...+.+..+..+|+... +++||+|++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~---g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~-------~~~fD~Vi~ 115 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLL---GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF-------NSRVDIVIM 115 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-------CCCCSEEEE
T ss_pred CCCEEEECcCcchHHHHHHHHc---CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh-------CCcCcEEEE
Confidence 4889999999999999887763 335899999999999999999888777889999998642 568999998
Q ss_pred hhh
Q psy11741 187 IFV 189 (352)
Q Consensus 187 ~~~ 189 (352)
+--
T Consensus 116 nPP 118 (201)
T d1wy7a1 116 NPP 118 (201)
T ss_dssp CCC
T ss_pred cCc
Confidence 543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.13 E-value=5.6e-11 Score=96.24 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=55.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+++|||+|||+|.++..++.. ...+|+|+|+++.+++.|+++.. ++.+.++|+.+. +++||+|+++
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~---ga~~V~~vDid~~a~~~ar~N~~----~~~~~~~D~~~l-------~~~fD~Vi~N 114 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLL---GAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEI-------SGKYDTWIMN 114 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHT---TBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGC-------CCCEEEEEEC
T ss_pred CCEEEEeCCCCcHHHHHHHHc---CCCcccccccCHHHHHHHHHccc----cccEEEEehhhc-------CCcceEEEeC
Confidence 889999999999998877774 23479999999999999999863 578999998742 4789999986
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=4.8e-11 Score=98.67 Aligned_cols=107 Identities=11% Similarity=0.139 Sum_probs=85.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCC--CCCCCcceE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNP--PFAPESLDI 183 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~--~~~~~~fD~ 183 (352)
+++|||+|||+|..+..++..+. .+.+++.+|.++...+.|++++... ..++.+..+|+.+....+ ....++||+
T Consensus 60 ~k~vLEiGt~~GyStl~~a~al~-~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 60 AKKALDLGTFTGYSALALALALP-ADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSC-TTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCeEEEEechhhHHHHHHHHhCC-CCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 78999999999999999999885 4679999999999999999998753 367999999875421001 112568999
Q ss_pred EEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|+... +.......+..+.++|+|||++++.+.
T Consensus 139 ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 139 AVVDA-----DKENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp EEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 99843 335667788889999999999999754
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.95 E-value=3.5e-10 Score=93.81 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=85.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC--CceEEEEecCCCCCCCC---CCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP--DRCHAFVCDVTSEDWNP---PFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~---~~~~~~fD 182 (352)
+++|||+|+++|.-+..+++.++ ++.+++.+|.++...+.|++++...+ .+++++.+|+.+....+ ....++||
T Consensus 60 ~k~iLEiGT~~GyStl~la~al~-~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 60 AKNTMEIGVYTGYSLLATALAIP-EDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSC-TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCcEEEecchhhhhHHHHHhhCC-CCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 78999999999999999999885 46799999999999999999987643 57999999986421111 01246899
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|+.-. +.......++.+.++|+|||++++...
T Consensus 139 ~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 139 FIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp EEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred EEEecc-----chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 999853 235567888888999999999999743
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=8.1e-10 Score=88.86 Aligned_cols=103 Identities=10% Similarity=0.047 Sum_probs=77.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC-CCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK-PDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|||++||+|.++..++.+ ....|+.||.++.+++.+++++... ..++.++..|+... +.....+||+|++
T Consensus 44 ~~~vLDlfaGsG~~giealsr---Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~---l~~~~~~fDlIf~ 117 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSR---YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF---LAQKGTPHNIVFV 117 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH---HSSCCCCEEEEEE
T ss_pred hhhhhhhhccccceeeeEEec---CcceeEEEEEeechhhHHHHHHhhccccceeeeeeccccc---ccccccccCEEEE
Confidence 789999999999999988874 2338999999999999999998753 35788888887752 2334678999998
Q ss_pred hhhhhccChhHHHHHHHHHHH--hcCCCEEEEEEe
Q psy11741 187 IFVLDAINPNKMQHVINQVYK--YLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~ 219 (352)
.=-.. ......++..+.+ +|+|+|++++..
T Consensus 118 DPPY~---~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 118 DPPFR---RGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp CCSSS---TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cCccc---cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 42211 1244556666654 599999999864
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=1.4e-08 Score=82.52 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=81.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|+|+|||.|.-+..+|-.. |..+++.+|.+..-+...+......+ .+++.+...+.+. . ...+||+|++
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~--p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~----~-~~~~fD~V~s 138 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVR--PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF----P-SEPPFDGVIS 138 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHC--TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS----C-CCSCEEEEEC
T ss_pred CCceeeeeccCCceeeehhhhc--ccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhh----c-cccccceehh
Confidence 6799999999999999998866 88999999999998888877666544 5799999888742 1 2568999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
..+ ..+..++.-+...+++||.+++.-
T Consensus 139 RA~------~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 139 RAF------ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp SCS------SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred hhh------cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 765 345678888899999999998863
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.86 E-value=1e-09 Score=88.08 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=77.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.+.+|||++||+|.++...+.+ ....|+++|.++.+++.+++++... ..++.+.++|+......+.....+||+|
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~sr---Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI 117 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSR---GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 117 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEcccccccccceeeec---chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceE
Confidence 3889999999999999988884 2337999999999999999997642 3478999999864211111134579999
Q ss_pred EehhhhhccChhHHHHHHHHHHH--hcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYK--YLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~ 219 (352)
++.=-.. .......+..+.+ +|+|+|++++..
T Consensus 118 flDPPY~---~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 118 LLDPPYA---KQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp EECCCGG---GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred Eechhhh---hhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 8732111 1344566777654 699999998864
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.77 E-value=4.4e-09 Score=91.33 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=81.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc------CCCceEEEEecCCCCCCCCCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY------KPDRCHAFVCDVTSEDWNPPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~f 181 (352)
+++||.||+|.|..+..+++.. +..+|++||+++.+++.|++.+.. ..++++++.+|+... +...+++|
T Consensus 78 pk~VLiiG~G~G~~~~~ll~~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~---l~~~~~~y 152 (312)
T d1uira_ 78 PKRVLIVGGGEGATLREVLKHP--TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY---LERTEERY 152 (312)
T ss_dssp CCEEEEEECTTSHHHHHHTTST--TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH---HHHCCCCE
T ss_pred cceEEEeCCCchHHHHHHHhcC--CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHH---hhhcCCcc
Confidence 7899999999999999888764 567999999999999999987632 347899999998753 22235789
Q ss_pred eEEEehhhhhcc--C-hh--HHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 182 DIVLLIFVLDAI--N-PN--KMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 182 D~V~~~~~l~~~--~-~~--~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
|+|++-..-.+. . .. .-..+++.+++.|+|||++++..
T Consensus 153 DvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 999974321110 0 11 12568899999999999998853
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=1e-07 Score=84.79 Aligned_cols=103 Identities=20% Similarity=0.304 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|||+-||+|.++..|++ ...+|+|+|.++.+++.|+++++..+ .|+.++.+|+.+...........+|+|+
T Consensus 212 ~~~~vlDLycG~G~fsl~La~----~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 212 PEDRVLDLFCGMGNFTLPLAT----QAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp TTCEEEEESCTTTTTHHHHHT----TSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCceEEEecccccccchhccc----cccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence 478999999999999999998 56699999999999999999987644 6899999998864433333456799998
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
..= +..-...+++.+.+ ++|.-+++++.
T Consensus 288 lDP-----PR~G~~~~~~~l~~-~~~~~ivYVSC 315 (358)
T d1uwva2 288 LDP-----ARAGAAGVMQQIIK-LEPIRIVYVSC 315 (358)
T ss_dssp ECC-----CTTCCHHHHHHHHH-HCCSEEEEEES
T ss_pred eCC-----CCccHHHHHHHHHH-cCCCEEEEEeC
Confidence 721 11112245555555 37777777763
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.72 E-value=1e-08 Score=87.93 Aligned_cols=109 Identities=13% Similarity=0.164 Sum_probs=82.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+++||-||.|.|..+..+++.. +..+|++||+++.+++.|++.+.. ..++++++.+|+... +...+++||
T Consensus 90 pk~VLiiGgG~G~~~r~~l~~~--~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~---l~~~~~~yD 164 (295)
T d1inla_ 90 PKKVLIIGGGDGGTLREVLKHD--SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY---VRKFKNEFD 164 (295)
T ss_dssp CCEEEEEECTTCHHHHHHTTST--TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH---GGGCSSCEE
T ss_pred CceEEEecCCchHHHHHHHhcC--CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHH---HhcCCCCCC
Confidence 7899999999999999998864 556899999999999999987642 247899999998763 333467899
Q ss_pred EEEehhhhhccCh-h--HHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 183 IVLLIFVLDAINP-N--KMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~l~~~~~-~--~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+|++...-....+ . .-..+++.+++.|+|||++++...+
T Consensus 165 vIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 165 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 9998533211110 1 1357899999999999999987543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.71 E-value=7.4e-09 Score=88.47 Aligned_cols=105 Identities=18% Similarity=0.204 Sum_probs=78.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----------CCCceEEEEecCCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----------KPDRCHAFVCDVTSEDWNPPF 176 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----------~~~~v~~~~~d~~~~~~~~~~ 176 (352)
+.+||-||+|.|..+..+++. +..+|+++|+++.+++.|++.+.. ..++++++.+|+... +.
T Consensus 73 p~~vLiiG~G~G~~~~~~l~~---~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~---l~- 145 (276)
T d1mjfa_ 73 PKRVLVIGGGDGGTVREVLQH---DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF---IK- 145 (276)
T ss_dssp CCEEEEEECTTSHHHHHHTTS---CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH---HH-
T ss_pred CceEEEecCCchHHHHHHHHh---CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHH---Hh-
Confidence 789999999999999888774 445899999999999999976532 246899999998742 11
Q ss_pred CCCcceEEEehhhhhccChh--HHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 177 APESLDIVLLIFVLDAINPN--KMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 177 ~~~~fD~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+++||+|++-..-..-.+. .-..+++.+++.|+|||++++..
T Consensus 146 ~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 146 NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 25789999974332111111 12578999999999999998864
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.70 E-value=1.2e-08 Score=89.76 Aligned_cols=109 Identities=17% Similarity=0.293 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCccccHHHHHhhcC---CCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCK---NDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
++.+|||.|||+|.++..+...+. ....+++|+|+++.++..|+.+......+......|.... ....+||+
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~~~~~fD~ 191 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-----LLVDPVDV 191 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-----CCCCCEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc-----cccccccc
Confidence 367899999999999988876542 1456899999999999999988766556677788776532 23578999
Q ss_pred EEehhhhhccC----------------hhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 184 VLLIFVLDAIN----------------PNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 184 V~~~~~l~~~~----------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|+++--+.... ..-...++..+.+.|+|||++++..+
T Consensus 192 vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 192 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 99953221110 01233578999999999999887654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.68 E-value=2.7e-08 Score=82.71 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSE 170 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~ 170 (352)
.++.+|||||||+|.+|..|++ .+.+|+++|+++.+++.++++... .+++.++.+|+.+.
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~----~~~~v~avE~D~~l~~~l~~~~~~-~~n~~i~~~D~l~~ 79 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQ----RCNFVTAIEIDHKLCKTTENKLVD-HDNFQVLNKDILQF 79 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHH----HSSEEEEECSCHHHHHHHHHHTTT-CCSEEEECCCGGGC
T ss_pred CCCCeEEEECCCchHHHHHHHh----CcCceEEEeeccchHHHHHHHhhc-ccchhhhhhhhhhc
Confidence 3488999999999999999998 445899999999999999987654 36899999999864
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=2.6e-08 Score=85.07 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=80.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc-----cCCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-----YKPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+++||-||.|.|..+..+.+.. +..+++++|+++.+++.|++.+. ...++++++.+|+... +....++||
T Consensus 79 pk~vLiiGgG~G~~~~~~l~~~--~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~---l~~~~~~yD 153 (285)
T d2o07a1 79 PRKVLIIGGGDGGVLREVVKHP--SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF---MKQNQDAFD 153 (285)
T ss_dssp CCEEEEEECTTSHHHHHHTTCT--TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH---HHTCSSCEE
T ss_pred cCeEEEeCCCchHHHHHHHHcC--CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHH---HhcCCCCCC
Confidence 6899999999999999998764 46799999999999999998763 2357899999998753 222357899
Q ss_pred EEEehhhhhccChh--HHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 183 IVLLIFVLDAINPN--KMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+|++-..-..-.+. .-..+++.+++.|+|||++++....
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 99984321110111 2235789999999999999987543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.62 E-value=3.1e-08 Score=84.27 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=82.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+++||-||.|.|..+..+++.. +..+++.+|+++.+++.|++.+.. ..++++++.+|+... +...+++||
T Consensus 76 p~~vLiiGgG~G~~~~~~l~~~--~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~---l~~~~~~yD 150 (274)
T d1iy9a_ 76 PEHVLVVGGGDGGVIREILKHP--SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH---IAKSENQYD 150 (274)
T ss_dssp CCEEEEESCTTCHHHHHHTTCT--TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH---HHTCCSCEE
T ss_pred cceEEecCCCCcHHHHHHHhcC--CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHH---HhhcCCCCC
Confidence 6899999999999999998853 456999999999999999987632 347899999998752 222357899
Q ss_pred EEEehhhhhccChh--HHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAINPN--KMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|++-..-..-.+. .-..+++.+++.|+|||+++....
T Consensus 151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 99985321111111 135788999999999999998743
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.59 E-value=5.2e-07 Score=74.47 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=78.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
..+|+|+|+|.|.-++.++-.. |..+++.+|.+..-+...+......+ .++..+...+..... .....++||+|++
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~--p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~-~~~~~~~~D~v~s 147 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICF--PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQ-RKDVRESYDIVTA 147 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHC--TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTT-CTTTTTCEEEEEE
T ss_pred CCeEEeecCCCchHHHHHHHhC--CCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccc-cccccccceEEEE
Confidence 6799999999999999998766 88999999999987777766554433 577777776653211 1112468999999
Q ss_pred hhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 187 IFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 187 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
..+ ..+..++.-+...+++||.+++.
T Consensus 148 RAv------a~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 148 RAV------ARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp ECC------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhh------hCHHHHHHHHhhhcccCCEEEEE
Confidence 865 45567888899999999999885
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.59 E-value=1.4e-08 Score=84.83 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=73.9
Q ss_pred cccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC
Q psy11741 78 NRFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP 157 (352)
Q Consensus 78 ~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~ 157 (352)
.+|..+.....+.+..+- ..++.+|||||||+|.+|..|++ .+.+|+++|+++.+++.++++....
T Consensus 9 QnFL~d~~ii~kIv~~~~---------~~~~d~VLEIGpG~G~LT~~L~~----~~~~v~aIE~D~~l~~~l~~~~~~~- 74 (245)
T d1yuba_ 9 QNFLTSEKVLNQIIKQLN---------LKETDTVYEIGTGKGHLTTKLAK----ISKQVTSIELDSHLFNLSSEKLKLN- 74 (245)
T ss_dssp CCBCCCTTTHHHHHHHCC---------CCSSEEEEECSCCCSSCSHHHHH----HSSEEEESSSSCSSSSSSSCTTTTC-
T ss_pred CcccCCHHHHHHHHHhcC---------CCCCCeEEEECCCccHHHHHHHh----hcCceeEeeecccchhhhhhhhhhc-
Confidence 366667665555444332 23478999999999999999998 4568999999999998887776433
Q ss_pred CceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccChhHHHHHH
Q psy11741 158 DRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINPNKMQHVI 202 (352)
Q Consensus 158 ~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l 202 (352)
.+++++.+|+.+. .++...++.|+++. -++++.+-+..++
T Consensus 75 ~n~~ii~~D~l~~----~~~~~~~~~vv~NL-PY~Ist~il~~~l 114 (245)
T d1yuba_ 75 TRVTLIHQDILQF----QFPNKQRYKIVGNI-PYHLSTQIIKKVV 114 (245)
T ss_dssp SEEEECCSCCTTT----TCCCSSEEEEEEEC-CSSSCHHHHHHHH
T ss_pred cchhhhhhhhhcc----ccccceeeeEeeee-ehhhhHHHHHHHh
Confidence 6899999999853 34455566666544 3566544344443
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.57 E-value=2.8e-07 Score=79.95 Aligned_cols=136 Identities=10% Similarity=0.075 Sum_probs=95.9
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+.++.+|||++||.|.-+..++.... ....++++|.++.-+...+++....+ .++.....|.. .++.....||.
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~-~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~----~~~~~~~~fD~ 188 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMR-NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL----HIGELNVEFDK 188 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTT-TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGG----GGGGGCCCEEE
T ss_pred CCccceeeecccchhhhhHhhhhhcc-cccceeeeccCHHHHHHHHHHHHHHHhhcccccccccc----ccccccccccE
Confidence 45689999999999999999988764 45689999999999999888776533 56666666655 23334678999
Q ss_pred EEeh------hhhhc-------cCh-------hHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeec
Q psy11741 184 VLLI------FVLDA-------INP-------NKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYAR 243 (352)
Q Consensus 184 V~~~------~~l~~-------~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
|++- .++.. .+. .-+..+|..+.+.|||||.++-++.+....
T Consensus 189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e------------------ 250 (313)
T d1ixka_ 189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE------------------ 250 (313)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG------------------
T ss_pred EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH------------------
Confidence 9981 11110 111 245578889999999999999887764321
Q ss_pred CCCeeeeccCHHHHHHHHHhCCCceEEe
Q psy11741 244 GDGTLVYFFTREEVKTMFESAGFVEKQN 271 (352)
Q Consensus 244 ~~~~~~~~~~~~~~~~ll~~~Gf~~~~~ 271 (352)
-+.+-+...+++.+|+.+..
T Consensus 251 --------ENE~VV~~~L~~~~~~~~~~ 270 (313)
T d1ixka_ 251 --------ENEFVIQWALDNFDVELLPL 270 (313)
T ss_dssp --------GTHHHHHHHHHHSSEEEECC
T ss_pred --------hHHHHHHHHHhcCCCEEeec
Confidence 23455667777777666543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.56 E-value=4.2e-08 Score=84.42 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=79.4
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+++||-||.|.|..+..+++.. +..+|+.+|+++.+++.|++.+.. ..++++++.+|+... +....++||
T Consensus 107 pk~VLIiGgG~G~~~rellk~~--~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~---l~~~~~~yD 181 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHE--SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF---LKNHKNEFD 181 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCT--TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH---HHHCTTCEE
T ss_pred CCeEEEeCCCchHHHHHHHHcC--CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHH---HHhCCCCCC
Confidence 7899999999999999998853 446899999999999999987542 237899999998753 223367899
Q ss_pred EEEehhhhhccChh--HHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 183 IVLLIFVLDAINPN--KMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 183 ~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+|++-..-..-.+. .-..+++.+++.|+|||+++....
T Consensus 182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp EEEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 99984332111111 235678999999999999999743
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.54 E-value=9.1e-08 Score=81.93 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=81.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc-----cCCCceEEEEecCCCCCCCCCCCCCcce
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE-----YKPDRCHAFVCDVTSEDWNPPFAPESLD 182 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~~fD 182 (352)
+++||=||-|.|..+..+++.. +..+++++|+++.+++.|++.+. ...++++.+.+|...... ...+++||
T Consensus 81 pk~VLiiGgG~G~~~r~~l~~~--~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~--~~~~~~yD 156 (290)
T d1xj5a_ 81 PKKVLVIGGGDGGVLREVARHA--SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK--NAAEGSYD 156 (290)
T ss_dssp CCEEEEETCSSSHHHHHHTTCT--TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH--TSCTTCEE
T ss_pred CcceEEecCCchHHHHHHHhcc--cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHh--hccccCcc
Confidence 6799999999999999998864 44689999999999999998753 235889999999765321 12356899
Q ss_pred EEEehhhhhccChh--HHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 183 IVLLIFVLDAINPN--KMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~l~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+|++-..-..-.+. .-..+++.+++.|+|||++++...+
T Consensus 157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 99974321110001 2356899999999999999997543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.51 E-value=1.2e-07 Score=75.33 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCC-CCCCCcceEE
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNP-PFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~fD~V 184 (352)
.++..++|+.||.|..+..+++ .+.+|+|+|..+.++..|++.. ..++.+++.+..+....+ ....+.+|.|
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~----~~~~viaiD~D~~ai~~a~~~~---~~~~~~~~~~f~~~~~~l~~~~~~~vdgI 89 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILE----RGGRVIGLDQDPEAVARAKGLH---LPGLTVVQGNFRHLKRHLAALGVERVDGI 89 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHTC---CTTEEEEESCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHhc----ccCcEEEEhhhhhHHHHHhhcc---ccceeEeehHHHHHHHHHHHcCCCccCEE
Confidence 3488999999999999999988 4569999999999999998753 357888888776432111 1234679999
Q ss_pred Eehhhhh--cc-C----hhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 185 LLIFVLD--AI-N----PNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 185 ~~~~~l~--~~-~----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+....+. ++ + .......|.....+|+|||.+++..+.
T Consensus 90 l~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 90 LADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp EEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred EEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 8743221 11 1 134556788899999999999987653
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.47 E-value=1.8e-07 Score=74.74 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=74.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
+.+|||+.||||.+++..+.+ ....|+.||.+..+++..+++++..+ ........|+.... .......+||+|
T Consensus 44 ~~~vLDlFaGsG~~glEalSR---GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l-~~~~~~~~fDlI 119 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSR---QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL-KQPQNQPHFDVV 119 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT-TSCCSSCCEEEE
T ss_pred cceEeecccCccceeeeeeee---cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccc-cccccCCcccEE
Confidence 779999999999999999985 33389999999999999999977532 34566666654321 122234579999
Q ss_pred EehhhhhccChhHHHHHHHHHHH--hcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYK--YLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~ 219 (352)
++.=-.. . .....++..+.. +|+++|++++..
T Consensus 120 FlDPPY~-~--~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 120 FLDPPFH-F--NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp EECCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred EechhHh-h--hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 8732111 1 345566776654 699999999964
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.46 E-value=1.3e-07 Score=78.10 Aligned_cols=100 Identities=18% Similarity=0.264 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
++.+|||.|||+|.++..+.+... ....++|+|+++.++..++ ......+|..... ...+||+|++
T Consensus 19 ~~~~IlDp~~G~G~fl~~~~~~~~-~~~~i~g~ei~~~~~~~~~--------~~~~~~~~~~~~~-----~~~~fd~ii~ 84 (223)
T d2ih2a1 19 RGGRVLEPACAHGPFLRAFREAHG-TAYRFVGVEIDPKALDLPP--------WAEGILADFLLWE-----PGEAFDLILG 84 (223)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHC-SCSEEEEEESCTTTCCCCT--------TEEEEESCGGGCC-----CSSCEEEEEE
T ss_pred CcCEEEECCCchHHHHHHHHHhcc-ccceEEeeecCHHHHhhcc--------cceeeeeehhccc-----cccccceecc
Confidence 478999999999999988877653 4568999999987544332 3456677765421 2568999998
Q ss_pred hhhhhcc---C------------------------hhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 187 IFVLDAI---N------------------------PNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 187 ~~~l~~~---~------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
+--.... . ..-...++..+.+.|+|||++.+..+
T Consensus 85 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 85 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 5332111 0 00134567888899999999888754
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.43 E-value=3e-07 Score=78.62 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=81.3
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
.+.++.+|||+++|.|.-+..++... .+..|+++|+++.-+...+++.+..+.++.....+.... ......+.||.
T Consensus 99 ~~~~g~~vLD~CAaPGgKt~~la~l~--~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~--~~~~~~~~fd~ 174 (284)
T d1sqga2 99 APQNGEHILDLCAAPGGKTTHILEVA--PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP--SQWCGEQQFDR 174 (284)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHC--TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT--HHHHTTCCEEE
T ss_pred CccccceeEeccCccccchhhhhhhh--hhhhhhhhhcchhhhhhHhhhhhcccccceeeecccccc--chhcccccccE
Confidence 34558999999999999999998865 457899999999999999888877664443333332211 11123568999
Q ss_pred EEe------hhhhh-------ccCh-------hHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 184 VLL------IFVLD-------AINP-------NKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 184 V~~------~~~l~-------~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
|++ ..++. ..++ .-+..+|..+.+.|||||+|+-++.+..
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 998 11121 1111 1355788999999999999999887643
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.41 E-value=1.3e-07 Score=78.07 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=69.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcC--CCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCK--NDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+++|||+|++.|.-+..++..+. ....+++|+|+.+.....+. ....++++.++|..+......+....+|+|+
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~----~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIf 156 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDMENITLHQGDCSDLTTFEHLREMAHPLIF 156 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh----ccccceeeeecccccHHHHHHHHhcCCCEEE
Confidence 77999999999987776665431 25679999999875332221 1236799999998754321223345688887
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.-.. |+. +....-+ .+..+|+|||++++.+.
T Consensus 157 ID~~-H~~--~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 157 IDNA-HAN--TFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EESS-CSS--HHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred EcCC-cch--HHHHHHH-HHhcccCcCCEEEEEcC
Confidence 7543 433 3333334 35689999999999764
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.7e-06 Score=72.86 Aligned_cols=115 Identities=10% Similarity=0.095 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC-CceEEEEecCCCCCCCCCCCCCcceE
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP-DRCHAFVCDVTSEDWNPPFAPESLDI 183 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ 183 (352)
+.++.+|||++||+|.-+..++.... ....++++|+++.-++..+++++..+ .++.+...|........+ ..++||.
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~-~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~-~~~~fD~ 169 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLK-NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP-RYHEVHY 169 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG-GGTTEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhc-CCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccc-ccceeeE
Confidence 44588999999999999999988764 55689999999999999998887754 678888888765321111 1357999
Q ss_pred EEeh------hhhhcc---------Ch-------hHHHHHHHHHHHhcCCCEEEEEEeCCC
Q psy11741 184 VLLI------FVLDAI---------NP-------NKMQHVINQVYKYLKPGGMVLFRDYGR 222 (352)
Q Consensus 184 V~~~------~~l~~~---------~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 222 (352)
|++. .++... +. ..+..++..+. .++|||.|+-++.+.
T Consensus 170 VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 170 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred EeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 9982 111100 00 12234555555 479999988887664
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=6e-07 Score=71.16 Aligned_cols=104 Identities=12% Similarity=0.142 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC----CCCCCCcce
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN----PPFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~----~~~~~~~fD 182 (352)
++.+||||||++|.++..+++... ....++|+|+.+- ....++.+.++|+...... .....+++|
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~-~~~~v~~vDl~~~----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIG-GKGRIIACDLLPM----------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-TTCEEEEEESSCC----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEeccCCcceEEEEeecc-ccceEEEeecccc----------cccCCceEeecccccchhhhhhhhhccCccee
Confidence 378999999999999999988765 5568999998652 1235688999998753210 012346799
Q ss_pred EEEehhhhhccC---------hhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 183 IVLLIFVLDAIN---------PNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 183 ~V~~~~~l~~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+|++-.+...-. .+-....+.-+.++|++||.+++-.+.
T Consensus 91 lVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 999954432211 112335566678999999999997654
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=1.2e-06 Score=73.15 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=59.6
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+.....+....+.. .++..|||||||+|.+|..|++ .+.+|+++|+++.+++..+++... ..
T Consensus 2 nFL~d~~~~~~Iv~~~~~---------~~~d~vlEIGpG~G~LT~~Ll~----~~~~v~aiEiD~~l~~~L~~~~~~-~~ 67 (252)
T d1qyra_ 2 NFLNDQFVIDSIVSAINP---------QKGQAMVEIGPGLAALTEPVGE----RLDQLTVIELDRDLAARLQTHPFL-GP 67 (252)
T ss_dssp CEECCHHHHHHHHHHHCC---------CTTCCEEEECCTTTTTHHHHHT----TCSCEEEECCCHHHHHHHHTCTTT-GG
T ss_pred CccCCHHHHHHHHHhcCC---------CCCCEEEEECCCchHHHHHHHc----cCCceEEEEeccchhHHHHHHhhh-cc
Confidence 455565555544444322 2378999999999999999998 556899999999999999886543 36
Q ss_pred ceEEEEecCCCC
Q psy11741 159 RCHAFVCDVTSE 170 (352)
Q Consensus 159 ~v~~~~~d~~~~ 170 (352)
+++++.+|+.+.
T Consensus 68 ~~~ii~~D~l~~ 79 (252)
T d1qyra_ 68 KLTIYQQDAMTF 79 (252)
T ss_dssp GEEEECSCGGGC
T ss_pred chhHHhhhhhhh
Confidence 899999999853
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=3.7e-06 Score=71.06 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSE 170 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~ 170 (352)
++..|||||||.|.+|..|++ .+.+|+++++++.+++..++.+... ..+++++.+|+...
T Consensus 21 ~~d~VlEIGPG~G~LT~~Ll~----~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~ 82 (278)
T d1zq9a1 21 PTDVVLEVGPGTGNMTVKLLE----KAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 82 (278)
T ss_dssp TTCEEEEECCTTSTTHHHHHH----HSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred CCCEEEEECCCchHHHHHHHh----cCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence 378999999999999999998 4458999999999999998876542 36799999999853
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.16 E-value=1.7e-05 Score=71.55 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCC-----------eEEEEEeCCHHHHHHHHhccccCC---CceEEEEecCCCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDN-----------VFVYGCDFSENAVNILKEHEEYKP---DRCHAFVCDVTSEDW 172 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~-----------~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~ 172 (352)
++.+|+|.+||+|.++..+.+.....+ ..++|+|+++.+...|+.+..-.+ ........|....
T Consensus 162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~-- 239 (425)
T d2okca1 162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK-- 239 (425)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS--
T ss_pred ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh--
Confidence 378999999999999988877653211 248999999999999987754322 3345667776532
Q ss_pred CCCCCCCcceEEEehhhhhcc---------------ChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 173 NPPFAPESLDIVLLIFVLDAI---------------NPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 173 ~~~~~~~~fD~V~~~~~l~~~---------------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
....+||+|+++=-+... .......++..+.+.|+|||.+.+..+
T Consensus 240 ---~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 240 ---EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp ---CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 235689999994322111 011234688999999999998887654
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.92 E-value=4.1e-06 Score=74.00 Aligned_cols=101 Identities=13% Similarity=0.032 Sum_probs=74.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCC----------------CceEEEEecCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKP----------------DRCHAFVCDVTSED 171 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----------------~~v~~~~~d~~~~~ 171 (352)
+.+|||..||+|..++..+... +...|++.|+|+.+++.+++|++.++ ..+.+...|+...
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~--~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~- 122 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALET--PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL- 122 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHS--SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH-
T ss_pred CCEEEEcCCCccHHHHHHHHhC--CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh-
Confidence 7799999999999999877765 45589999999999999999875432 1244555554321
Q ss_pred CCCCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 172 WNPPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 172 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+......||+|..-- + .....+|..+.+.++.||.|.++.
T Consensus 123 --~~~~~~~fDvIDiDP----f--Gs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 123 --MAERHRYFHFIDLDP----F--GSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp --HHHSTTCEEEEEECC----S--SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred --hHhhcCcCCcccCCC----C--CCcHHHHHHHHHHhccCCEEEEEe
Confidence 111245799987632 2 344568888999999999999964
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.86 E-value=1.1e-05 Score=65.87 Aligned_cols=109 Identities=15% Similarity=0.064 Sum_probs=64.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCc-eEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDR-CHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+..+|+|+|||.|.++..++... +...+.|+|+--..-+ ........+-+ +.+...+.. ...+++..|+|+
T Consensus 66 ~~~~vvDlG~~pGgws~~~a~~~--~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~~~dv-----~~l~~~~~D~vl 137 (257)
T d2p41a1 66 PEGKVVDLGCGRGGWSYYCGGLK--NVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSGVDV-----FFIPPERCDTLL 137 (257)
T ss_dssp CCEEEEEETCTTSHHHHHHHTST--TEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECSCCT-----TTSCCCCCSEEE
T ss_pred CCCeEEEecCCCChHHHHHHhhc--CCCceeEEEecCcccc-CCccccccccccccchhhhhH-----HhcCCCcCCEEE
Confidence 36789999999999999998754 4567888877422100 00000011112 233322211 113467899999
Q ss_pred ehhhhhccC----hhHHHHHHHHHHHhcCCCEEEEEEeCCCC
Q psy11741 186 LIFVLDAIN----PNKMQHVINQVYKYLKPGGMVLFRDYGRY 223 (352)
Q Consensus 186 ~~~~l~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 223 (352)
|-.+-..-+ ......+|+-+.+.|+|||-|++-.+.+.
T Consensus 138 cDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py 179 (257)
T d2p41a1 138 CDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY 179 (257)
T ss_dssp ECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred eeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence 964322111 11233677778899999999998766543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=3.2e-05 Score=71.63 Aligned_cols=111 Identities=10% Similarity=0.032 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCC----------------CeEEEEEeCCHHHHHHHHhccccCCCc------eEEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKND----------------NVFVYGCDFSENAVNILKEHEEYKPDR------CHAFV 164 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~----------------~~~v~gvD~s~~~l~~a~~~~~~~~~~------v~~~~ 164 (352)
++.+|+|.+||+|.++..+.+.+... ...++|+|+++.+...|+-+.--.+.. ..+..
T Consensus 164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~ 243 (524)
T d2ar0a1 164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 243 (524)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence 37799999999999998776654211 125899999999999998765432211 12333
Q ss_pred ecCCCCCCCCCCCCCcceEEEehhhhhcc------------ChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 165 CDVTSEDWNPPFAPESLDIVLLIFVLDAI------------NPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 165 ~d~~~~~~~~~~~~~~fD~V~~~~~l~~~------------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
.+.... ......+||+|+++=-+..- ....-..++..+.+.|+|||++.+..+
T Consensus 244 ~~~l~~---d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 244 GNTLGS---DGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp SCTTSH---HHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhhh---cccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 332210 01124679999984322100 011234588999999999999888654
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.64 E-value=9.1e-05 Score=64.38 Aligned_cols=112 Identities=14% Similarity=0.208 Sum_probs=71.9
Q ss_pred CCeEEEEcCCccccHHHHHhhc--------------CCCCeEEEEEeCCHHHHHHHHhcccc-C--CCc--eEEEEecCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHC--------------KNDNVFVYGCDFSENAVNILKEHEEY-K--PDR--CHAFVCDVT 168 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~--------------~~~~~~v~gvD~s~~~l~~a~~~~~~-~--~~~--v~~~~~d~~ 168 (352)
.-+|.|+||.+|..++.+.... ..+..+|.--|+-..-....=+.+.. . ..+ +..+-+.+.
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 4679999999999885443311 12556777777754322222222111 1 111 222334444
Q ss_pred CCCCCCCCCCCcceEEEehhhhhccCh-------------------------------hHHHHHHHHHHHhcCCCEEEEE
Q psy11741 169 SEDWNPPFAPESLDIVLLIFVLDAINP-------------------------------NKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 169 ~~~~~~~~~~~~fD~V~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
. --+|+++.|++++..++|+++. .|+..+|+.=++-|+|||.+++
T Consensus 132 ~----rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl 207 (359)
T d1m6ex_ 132 G----RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp S----CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred h----hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 2 2367899999999999999842 1667788888889999999999
Q ss_pred EeCCCC
Q psy11741 218 RDYGRY 223 (352)
Q Consensus 218 ~~~~~~ 223 (352)
...++.
T Consensus 208 ~~~gr~ 213 (359)
T d1m6ex_ 208 TILGRR 213 (359)
T ss_dssp EEEECS
T ss_pred EEeccC
Confidence 876654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.80 E-value=0.00022 Score=58.56 Aligned_cols=76 Identities=11% Similarity=0.113 Sum_probs=55.5
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc---cC-------CCceEEEEecCCCCCCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE---YK-------PDRCHAFVCDVTSEDWNPPFA 177 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~---~~-------~~~v~~~~~d~~~~~~~~~~~ 177 (352)
..+|||+-||.|..+..++. .|.+|+++|-++.+....+.... .. ..+++++.+|..+. +...
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~----~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~---L~~~ 161 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLAS----VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA---LTDI 161 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHH----HTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH---STTC
T ss_pred CCEEEECCCcccHHHHHHHh----CCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH---Hhcc
Confidence 34899999999999999998 56799999999976655544322 11 13789999997653 2222
Q ss_pred CCcceEEEehhhh
Q psy11741 178 PESLDIVLLIFVL 190 (352)
Q Consensus 178 ~~~fD~V~~~~~l 190 (352)
..+||+|+.-=++
T Consensus 162 ~~~~DvIYlDPMF 174 (250)
T d2oyra1 162 TPRPQVVYLDPMF 174 (250)
T ss_dssp SSCCSEEEECCCC
T ss_pred CCCCCEEEECCCC
Confidence 4679999985444
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.73 E-value=0.00054 Score=54.39 Aligned_cols=104 Identities=10% Similarity=0.044 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC-----CCCCCCC
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW-----NPPFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~~ 179 (352)
.++.+||-+|||. |..+..+++.. ...+|+++|.++.-++.|++.-. ... .+..+..+ .+ ....
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~--ga~~Vi~~d~~~~rl~~a~~~Ga------~~~-~~~~~~~~~~~i~~~-t~g~ 93 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLL--GAAVVIVGDLNPARLAHAKAQGF------EIA-DLSLDTPLHEQIAAL-LGEP 93 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTTC------EEE-ETTSSSCHHHHHHHH-HSSS
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhh--cccceeeecccchhhHhhhhccc------cEE-EeCCCcCHHHHHHHH-hCCC
Confidence 3488999999998 55666667654 45589999999999999987632 111 12111100 00 0234
Q ss_pred cceEEEehhhhh-------ccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLD-------AINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~-------~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+|+++-..... .+........++.+.++++|||.+.+.-
T Consensus 94 g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 94 EVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp CEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 588888532211 1111223468999999999999998863
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.64 E-value=0.0017 Score=55.60 Aligned_cols=84 Identities=10% Similarity=-0.016 Sum_probs=58.9
Q ss_pred ccccchhhHHHhhhhhhcccCCCCCCCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCC
Q psy11741 79 RFFKDRHWLFTEFTEIIEPLSSTKTDTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPD 158 (352)
Q Consensus 79 ~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 158 (352)
+|..+.......+..+--.. + .....+..|||||+|.|.+|..|++.. ...+++++|+++...+..++... ..
T Consensus 18 nfL~d~~i~~~Iv~~~~l~~-~--~~~~~~~~VlEIGPG~G~LT~~Ll~~~--~~~~v~~iE~D~~~~~~L~~~~~--~~ 90 (322)
T d1i4wa_ 18 KYLWNPTVYNKIFDKLDLTK-T--YKHPEELKVLDLYPGVGIQSAIFYNKY--CPRQYSLLEKRSSLYKFLNAKFE--GS 90 (322)
T ss_dssp CCBCCHHHHHHHHHHHCGGG-T--CCCTTTCEEEEESCTTCHHHHHHHHHH--CCSEEEEECCCHHHHHHHHHHTT--TS
T ss_pred cccCCHHHHHHHHHHhcCCc-c--ccccCCCeEEEECCCCCHHHHHHHhcC--CCCEEEEEECCHHHHHHHHHhcc--CC
Confidence 56666665555444331110 0 012236789999999999999998864 23489999999999999988764 35
Q ss_pred ceEEEEecCCC
Q psy11741 159 RCHAFVCDVTS 169 (352)
Q Consensus 159 ~v~~~~~d~~~ 169 (352)
++.++.+|+..
T Consensus 91 ~~~ii~~D~l~ 101 (322)
T d1i4wa_ 91 PLQILKRDPYD 101 (322)
T ss_dssp SCEEECSCTTC
T ss_pred CcEEEeCchhh
Confidence 68889888763
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.60 E-value=0.0051 Score=47.18 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=61.3
Q ss_pred CCCeEEEEcCC-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC-----C-CCCCC
Q psy11741 107 STKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN-----P-PFAPE 179 (352)
Q Consensus 107 ~~~~vLD~GcG-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-----~-~~~~~ 179 (352)
++.+||-+||| .|..+..+++. .|.+|+++|.++.-++.|++... ...+ ..+....... + ....+
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~---~Ga~vi~v~~~~~r~~~a~~~ga----~~~~-~~~~~~~~~~~~~~~~~~~~g~ 97 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKA---YGAFVVCTARSPRRLEVAKNCGA----DVTL-VVDPAKEEESSIIERIRSAIGD 97 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHTTC----SEEE-ECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCEEEEEcccccchhhHhhHhh---hcccccccchHHHHHHHHHHcCC----cEEE-eccccccccchhhhhhhccccc
Confidence 47899999998 45566666665 66799999999999999987532 1122 2221110000 0 00134
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.+|+|+-... -...+..+.++|+|+|.+++.-
T Consensus 98 g~D~vid~~g--------~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 98 LPNVTIDCSG--------NEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp CCSEEEECSC--------CHHHHHHHHHHSCTTCEEEECS
T ss_pred CCceeeecCC--------ChHHHHHHHHHHhcCCceEEEe
Confidence 5888875321 1245777788999999988854
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.47 E-value=0.00044 Score=53.53 Aligned_cols=98 Identities=15% Similarity=0.041 Sum_probs=60.9
Q ss_pred CCCCeEEEEcCC-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCG-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+||-+||| .|..+..+++. .|.+++++|.|+..++.|++.-. . .++. ..+.........+.+|+|
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~---~G~~vi~~~~~~~k~~~a~~lGa----~-~~i~--~~~~~~~~~~~~~~~d~v 95 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKA---MGAETYVISRSSRKREDAMKMGA----D-HYIA--TLEEGDWGEKYFDTFDLI 95 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHH---HTCEEEEEESSSTTHHHHHHHTC----S-EEEE--GGGTSCHHHHSCSCEEEE
T ss_pred CCCCEEEEECCCCcchhHHHHhhh---ccccccccccchhHHHHhhccCC----c-EEee--ccchHHHHHhhhcccceE
Confidence 348899999998 56666777765 56799999999999999887521 1 1221 111100111124579988
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+......+- . .+....+.|+|+|++++.-
T Consensus 96 i~~~~~~~~--~----~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 96 VVCASSLTD--I----DFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EECCSCSTT--C----CTTTGGGGEEEEEEEEECC
T ss_pred EEEecCCcc--c----hHHHHHHHhhccceEEEec
Confidence 764221110 0 1334678899999998853
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.24 E-value=0.019 Score=48.26 Aligned_cols=110 Identities=9% Similarity=0.066 Sum_probs=75.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC----CCceEEEEecCCCCCC----CCCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK----PDRCHAFVCDVTSEDW----NPPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~----~~~~~~~ 179 (352)
...|+.+|||-=.-...+.. .++..++=+|. +.+++.-++.+... ..+...+..|+.+... ...+...
T Consensus 90 ~~qvV~LGaGlDTr~~Rl~~---~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~ 165 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRLDW---PTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS 165 (297)
T ss_dssp CCEEEEETCTTCCHHHHSCC---CTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred CCeEEEeCcccCChhhhcCC---CcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCC
Confidence 34677799998765544421 16778888996 67777665555432 2456777788764210 0112334
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
.--++++-.++.++++++...+|+.+.+...||+.+++...+
T Consensus 166 ~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~ 207 (297)
T d2uyoa1 166 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 207 (297)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred CCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 456677777899999999999999999999999999986443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.22 E-value=0.0037 Score=48.68 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--------CCCC
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--------NPPF 176 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--------~~~~ 176 (352)
++.+||-+|||. |..+..+++. .|+ +|+++|.++.-++.|++.-.. .. .|..+... .. .
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~---~Ga~~Vi~~~~~~~~~~~a~~lGa~-----~v--i~~~~~~~~~~~~~i~~~-~ 96 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARS---LGAENVIVIAGSPNRLKLAEEIGAD-----LT--LNRRETSVEERRKAIMDI-T 96 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHH---TTBSEEEEEESCHHHHHHHHHTTCS-----EE--EETTTSCHHHHHHHHHHH-T
T ss_pred CCCEEEEECCCccchhheecccc---cccccccccccccccccccccccce-----EE--EeccccchHHHHHHHHHh-h
Confidence 488999999974 6677777776 454 899999999999999875211 11 12221100 00 1
Q ss_pred CCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 177 APESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 177 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
....+|+|+-... . ...++...+.|+|||.+++.-
T Consensus 97 ~~~g~Dvvid~vG----~----~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 97 HGRGADFILEATG----D----SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp TTSCEEEEEECSS----C----TTHHHHHHHHEEEEEEEEECC
T ss_pred CCCCceEEeecCC----c----hhHHHHHHHHhcCCCEEEEEe
Confidence 1345899885321 1 134677789999999987753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.21 E-value=0.0017 Score=50.42 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=61.5
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC-----CCCCCC
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW-----NPPFAP 178 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~ 178 (352)
.++.+||=+|||. |..+..+++. .+. +|+++|.++.-++.|++.-. ..++ |..+..+ .. ...
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~---~Ga~~Vi~~d~~~~r~~~a~~lGa-----~~~i--~~~~~~~~~~v~~~-t~g 94 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKL---RGAGRIIGVGSRPICVEAAKFYGA-----TDIL--NYKNGHIEDQVMKL-TNG 94 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHT---TTCSCEEEECCCHHHHHHHHHHTC-----SEEE--CGGGSCHHHHHHHH-TTT
T ss_pred CCCCEEEEEcCCcchhhhhhhhhc---ccccccccccchhhhHHHHHhhCc-----cccc--cccchhHHHHHHHH-hhc
Confidence 3478899899987 7777888886 443 79999999999999986521 1111 2211100 00 113
Q ss_pred CcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 179 ESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 179 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
..+|+|+-.-.. ...++...++++|+|.+++.-
T Consensus 95 ~G~D~vid~~g~--------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 95 KGVDRVIMAGGG--------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp SCEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECC
T ss_pred cCcceEEEccCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 459998753221 134667778999999998854
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.89 E-value=0.0079 Score=44.00 Aligned_cols=94 Identities=10% Similarity=0.051 Sum_probs=60.4
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+|+=+|+ |.++..+++.+...+..|+.+|.+++.++.+.... .+.++.+|..+...-....-...|.+++..
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t- 73 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAVT- 73 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEECC-
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcChhhhhhhcccC-
Confidence 4555554 77888888877557889999999999988876542 357888998754211111235678887632
Q ss_pred hhccChhHHHHHHHHHHHhcCCCEEE
Q psy11741 190 LDAINPNKMQHVINQVYKYLKPGGMV 215 (352)
Q Consensus 190 l~~~~~~~~~~~l~~~~~~LkpgG~l 215 (352)
+.++...++..+.+.+.+.-.+
T Consensus 74 ----~~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 74 ----GKEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCCEE
T ss_pred ----CcHHHHHHHHHHHHHcCCceEE
Confidence 2233334445566677777443
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.81 E-value=0.0052 Score=52.13 Aligned_cols=45 Identities=7% Similarity=-0.078 Sum_probs=39.8
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY 155 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 155 (352)
++..|||.-||+|..+.+..+ .+.+.+|+|+++..++.|++++..
T Consensus 250 ~gdiVlDpF~GSGTT~~AA~~----lgR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 250 PDDLVVDIFGGSNTTGLVAER----ESRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp TTCEEEETTCTTCHHHHHHHH----TTCEEEEEESCHHHHHHHHGGGSC
T ss_pred CCCEEEecCCCCcHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHHHh
Confidence 489999999999998877776 677999999999999999988753
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.57 E-value=0.0068 Score=49.63 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=39.1
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE 154 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~ 154 (352)
.++..|||.-||+|..+.+..+ .+-+.+|+|+++..++.|++++.
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~~----~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAKK----LGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHH----cCCeEEEEeCCHHHHHHHHHHHc
Confidence 3488999999999998877766 66799999999999999998764
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.52 E-value=0.0083 Score=43.90 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=55.2
Q ss_pred CCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccCh
Q psy11741 116 CGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINP 195 (352)
Q Consensus 116 cG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~ 195 (352)
||.|.++..+++.+...+..|+++|.+++.++.++... ...+.+|..+...-....-...|.|++.. +.
T Consensus 6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~------~~~~~gd~~~~~~l~~a~i~~a~~vi~~~-----~~ 74 (134)
T d2hmva1 6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA------THAVIANATEENELLSLGIRNFEYVIVAI-----GA 74 (134)
T ss_dssp ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC------SEEEECCTTCTTHHHHHTGGGCSEEEECC-----CS
T ss_pred ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC------CcceeeecccchhhhccCCccccEEEEEc-----Cc
Confidence 35577888888877657889999999999988875432 35677888764311111123577766532 21
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 196 NKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 196 ~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
++-...+-.+.+.+.|.+.++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 75 NIQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE
T ss_pred hHHhHHHHHHHHHHcCCCcEEee
Confidence 22333333344444555566654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.42 E-value=0.043 Score=41.41 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=56.7
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+|.=||+| .++..+++.+...+.+|+++|.++..++.+++.-. +.....+.. .-...|+|+..
T Consensus 2 kI~iIG~G--~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~-----~~~~~~~~~--------~~~~~DiIila-- 64 (165)
T d2f1ka2 2 KIGVVGLG--LIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL-----VDEAGQDLS--------LLQTAKIIFLC-- 64 (165)
T ss_dssp EEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS-----CSEEESCGG--------GGTTCSEEEEC--
T ss_pred EEEEEeec--HHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhc-----cceeeeecc--------ccccccccccc--
Confidence 56667775 34444444443388899999999999888876421 111111111 12467888753
Q ss_pred hhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 190 LDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 190 l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
+++.....+++++...++++.+++-
T Consensus 65 ---vp~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 65 ---TPIQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp ---SCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred ---CcHhhhhhhhhhhhhhcccccceee
Confidence 3557788999999999998875543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0092 Score=45.90 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=62.0
Q ss_pred CCCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC----CCCCCC
Q psy11741 106 CSTKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN----PPFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~----~~~~~~ 179 (352)
.++.+||-.|+ |.|..+..+++. .|+++++++-|++..+.+++.-. . .+ .|..+..+. .....+
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~---~G~~vi~~~~~~~~~~~~~~~Ga---~--~v--i~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARA---YGLKILGTAGTEEGQKIVLQNGA---H--EV--FNHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHTTC---S--EE--EETTSTTHHHHHHHHHCTT
T ss_pred CCCCEEEEEeccccccccccccccc---cCcccccccccccccccccccCc---c--cc--cccccccHHHHhhhhhccC
Confidence 34889999996 456677777876 67899999999988888876421 1 11 233321100 001245
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.+|+|+.... ...+....++|+|+|.++..
T Consensus 97 g~d~v~d~~g---------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 97 GIDIIIEMLA---------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp CEEEEEESCH---------HHHHHHHHHHEEEEEEEEEC
T ss_pred CceEEeeccc---------HHHHHHHHhccCCCCEEEEE
Confidence 6999986422 13567778999999998874
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.081 Score=40.10 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCcccc-HHHHHhhcCCCCe-EEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC---CCC-CCCCc
Q psy11741 107 STKNILEIGCGVGNS-VFPIVEHCKNDNV-FVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW---NPP-FAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~-~~~l~~~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~---~~~-~~~~~ 180 (352)
++.+||=+|||+... +..+++. .+. +|+++|.++.-++.|++.-.. .+...+-..... .+. .....
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~---~G~~~Vi~~d~~~~rl~~a~~~Ga~-----~~~~~~~~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKA---MGAAQVVVTDLSATRLSKAKEIGAD-----LVLQISKESPQEIARKVEGQLGCK 97 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---TTCSEEEEEESCHHHHHHHHHTTCS-----EEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCccHHHHHHHHHH---cCCceEEeccCCHHHHHHHHHhCCc-----ccccccccccccccccccccCCCC
Confidence 478999999987554 4445554 454 899999999999999875211 111111110000 000 01246
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+|+-... -...++...+.+++||.+++.-
T Consensus 98 ~Dvvid~~G--------~~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 98 PEVTIECTG--------AEASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp CSEEEECSC--------CHHHHHHHHHHSCTTCEEEECS
T ss_pred ceEEEeccC--------CchhHHHHHHHhcCCCEEEEEe
Confidence 888876322 1346778889999999998854
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.00 E-value=0.012 Score=45.27 Aligned_cols=100 Identities=10% Similarity=0.019 Sum_probs=63.1
Q ss_pred CCCCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC---CCCCCCc
Q psy11741 105 TCSTKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN---PPFAPES 180 (352)
Q Consensus 105 ~~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~---~~~~~~~ 180 (352)
..++.+||=+|||. |..+..+++.. ....|+.+|.++.-++.|++.-.. ..+...-.+.... .....+.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~--Ga~~Vi~~d~~~~r~~~a~~~Ga~-----~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKALGAT-----DCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTTCS-----EEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHh--CCceeeeeccchHHHHHHHHhCCC-----cccCCccchhhhhhhHhhhhcCC
Confidence 34588999999998 77788888874 334799999999999999875321 1111111100000 0011356
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCC-EEEEEEe
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPG-GMVLFRD 219 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 219 (352)
+|+|+-... -...+....+.++|| |.+++.-
T Consensus 99 ~d~vie~~G--------~~~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 99 VDYSLDCAG--------TAQTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp BSEEEESSC--------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred CcEEEEecc--------cchHHHHHHHHhhcCCeEEEecC
Confidence 888875321 134678888999996 9988853
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.92 E-value=0.14 Score=42.84 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=49.5
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeE-EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVF-VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
.+|||+-||.|.+...+-. .|.+ +.++|+++.+.+.-+.+.. -....+|+.+... ..-...|+++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~----aG~~~~~a~e~d~~a~~~~~~N~~-----~~~~~~Di~~~~~---~~~~~~dll~~g 68 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQK----AGFRIICANEYDKSIWKTYESNHS-----AKLIKGDISKISS---DEFPKCDGIIGG 68 (324)
T ss_dssp CEEEEESCSSCHHHHHHHH----HTCEEEEEEECCHHHHHHHHHHCC-----SEEEESCTTTSCG---GGSCCCSEEEEC
T ss_pred CeEEEeCcCcCHHHHHHHH----CCCEEEEEEeCCHHHHHHHHHHCC-----CCCccCChhhCCH---hHcccccEEeec
Confidence 3799999999999887766 3444 4599999999998888763 3567789886421 112368999974
Q ss_pred h
Q psy11741 188 F 188 (352)
Q Consensus 188 ~ 188 (352)
.
T Consensus 69 ~ 69 (324)
T d1dcta_ 69 P 69 (324)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.82 E-value=0.42 Score=40.85 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=36.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC-----CCeEEEEEeCCHHHHHHHHhccc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN-----DNVFVYGCDFSENAVNILKEHEE 154 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~-----~~~~v~gvD~s~~~l~~a~~~~~ 154 (352)
..+|+|+|+|+|.++..++..+.. ...+++-+|.|+.+.+.-+++..
T Consensus 80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 568999999999999888775531 34578999999987776665543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.80 E-value=0.085 Score=39.88 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=56.6
Q ss_pred eEEEEcCCccccHHHHHhhcCC--CCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEeh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKN--DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLI 187 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~ 187 (352)
+|+=||||. .+..+++.+.. ...+|+|+|.++..++.|++... +.....+... ......|+|+..
T Consensus 3 ~I~IIG~G~--mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-----~~~~~~~~~~------~~~~~~dlIila 69 (171)
T d2g5ca2 3 NVLIVGVGF--MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-----IDEGTTSIAK------VEDFSPDFVMLS 69 (171)
T ss_dssp EEEEESCSH--HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-----CSEEESCGGG------GGGTCCSEEEEC
T ss_pred EEEEEccCH--HHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-----chhhhhhhhh------hhcccccccccc
Confidence 577789865 33434433321 34589999999999999987631 1111222111 113457888764
Q ss_pred hhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 188 FVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 188 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
.++.....++.++...++++..+.-
T Consensus 70 -----~p~~~~~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 70 -----SPVRTFREIAKKLSYILSEDATVTD 94 (171)
T ss_dssp -----SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -----CCchhhhhhhhhhhccccccccccc
Confidence 3556778899999999998865543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.79 E-value=0.22 Score=41.77 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeE-EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVF-VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
.+.+|||+-||.|.++..|-. .|.+ +.++|+++.+++..+.+.... ..+|+.+... ..-..+|+++
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~----aG~~~v~a~e~d~~a~~~~~~N~~~~------~~~Di~~~~~---~~~~~~Dll~ 76 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALES----CGAECVYSNEWDKYAQEVYEMNFGEK------PEGDITQVNE---KTIPDHDILC 76 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHH----TTCEEEEEECCCHHHHHHHHHHHSCC------CBSCGGGSCG---GGSCCCSEEE
T ss_pred CCCeEEEECccccHHHHHHHH----CCCeEEEEEeCCHHHHHHHHHHCCCC------CcCchhcCch---hhcceeeeee
Confidence 478999999999999888876 4554 467999999999998886432 2467765321 1124689998
Q ss_pred ehhhhhccC-----------hhHHHHHHHHHHHhcCCCEEEEEEeCCCCchhhHhhhcCccccCceeecCCCeeeeccCH
Q psy11741 186 LIFVLDAIN-----------PNKMQHVINQVYKYLKPGGMVLFRDYGRYDLVQLRFKKGRCLQDNFYARGDGTLVYFFTR 254 (352)
Q Consensus 186 ~~~~l~~~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (352)
...-..-++ ...+...+-++.+.++|. ++++... +. ... .......
T Consensus 77 ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~-~~~lENV-~~-~~~--------------------~~~~~~~ 133 (327)
T d2c7pa1 77 AGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK-VVFMENV-KN-FAS--------------------HDNGNTL 133 (327)
T ss_dssp EECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEE-GG-GGT--------------------GGGGHHH
T ss_pred cccccchhhhhhhhcCCcccchhHHHHHHHHHhccCCc-EEecccc-hh-hhh--------------------hccchhh
Confidence 733221111 112333334455667886 4444321 10 000 0001234
Q ss_pred HHHHHHHHhCCCceEEeee
Q psy11741 255 EEVKTMFESAGFVEKQNLI 273 (352)
Q Consensus 255 ~~~~~ll~~~Gf~~~~~~~ 273 (352)
+.+...|++.||.+....+
T Consensus 134 ~~i~~~l~~lGY~~~~~vl 152 (327)
T d2c7pa1 134 EVVKNTMNELDYSFHAKVL 152 (327)
T ss_dssp HHHHHHHHHTTBCCEEEEE
T ss_pred HHhhhHHHhcCCcceeeEe
Confidence 6778889999998775543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.64 E-value=0.025 Score=42.98 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 106 CSTKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 106 ~~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
.++.+||=+|||. |.++..+++. .+.+++++|.++.-++.+++.-.. .++ |..+.. ......+.+|+|
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~---~Ga~~i~~~~~~~~~~~a~~lGad-----~~i--~~~~~~-~~~~~~~~~D~v 97 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHA---MGAHVVAFTTSEAKREAAKALGAD-----EVV--NSRNAD-EMAAHLKSFDFI 97 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHTCS-----EEE--ETTCHH-HHHTTTTCEEEE
T ss_pred CCCCEEEEeccchHHHHHHHHhhc---ccccchhhccchhHHHHHhccCCc-----EEE--ECchhh-HHHHhcCCCcee
Confidence 3488999999865 5566667765 677888999999988888765221 111 221110 001123579988
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+-...-. ..+....++++|+|.+++.
T Consensus 98 id~~g~~--------~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 98 LNTVAAP--------HNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EECCSSC--------CCHHHHHTTEEEEEEEEEC
T ss_pred eeeeecc--------hhHHHHHHHHhcCCEEEEe
Confidence 7643211 1245667899999999885
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.61 E-value=0.012 Score=48.76 Aligned_cols=45 Identities=9% Similarity=0.102 Sum_probs=39.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY 155 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 155 (352)
++..|||.-||+|..+.+..+ -+.+.+|+|+++...+.|++++..
T Consensus 207 ~gdiVLDpF~GSGTT~~Aa~~----lgR~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 207 PGSTVLDFFAGSGVTARVAIQ----EGRNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp TTCEEEETTCTTCHHHHHHHH----HTCEEEEEESSTHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCcHHHHHHHH----hCCeEEEEeCCHHHHHHHHHHHHH
Confidence 488999999999998877766 556999999999999999998764
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.67 E-value=0.039 Score=42.21 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcCCccc-cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC---CCCCCCc
Q psy11741 105 TCSTKNILEIGCGVGN-SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN---PPFAPES 180 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~-~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~---~~~~~~~ 180 (352)
..++.+||=+|||.-. .+..+++.. ....++++|.++.-++.+++.-. ..++ |..+.... ..+.++.
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~--g~~~v~~~~~~~~k~~~a~~~Ga-----~~~i--~~~~~~~~~~i~~~t~gg 96 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQLGA-----THVI--NSKTQDPVAAIKEITDGG 96 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHHHTC-----SEEE--ETTTSCHHHHHHHHTTSC
T ss_pred CCCCCEEEEeCCCHHHhhhhhccccc--ccceeeeeccHHHHHHHHHHcCC-----eEEE--eCCCcCHHHHHHHHcCCC
Confidence 3458899999997543 455566654 34478899999999999887521 1222 22211100 0112457
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|+|+-.-. -...++.+.++++|+|.+++.
T Consensus 97 ~D~vid~~G--------~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 97 VNFALESTG--------SPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp EEEEEECSC--------CHHHHHHHHHTEEEEEEEEEC
T ss_pred CcEEEEcCC--------cHHHHHHHHhcccCceEEEEE
Confidence 999875321 124567788999999998875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.42 E-value=0.025 Score=42.87 Aligned_cols=93 Identities=11% Similarity=0.133 Sum_probs=56.0
Q ss_pred CCCeEEEEcCCc-cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC-CCCCCcce
Q psy11741 107 STKNILEIGCGV-GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP-PFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~-G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~-~~~~~~fD 182 (352)
++.+||=+|||. |..+..+++. .|.+|+++|.++.-++.+++.-. ..++ |..+... .. ....+.+|
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~---~G~~Vi~~~~~~~~~~~a~~~Ga-----~~~i--~~~~~~~~~~~~~~~~g~~~ 96 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARA---MGLHVAAIDIDDAKLELARKLGA-----SLTV--NARQEDPVEAIQRDIGGAHG 96 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHTTC-----SEEE--ETTTSCHHHHHHHHHSSEEE
T ss_pred CCCEEEEeeccccHHHHHHHHHH---cCCccceecchhhHHHhhhccCc-----cccc--cccchhHHHHHHHhhcCCcc
Confidence 478898899875 3444555555 56899999999999999887522 1122 2221100 00 00123344
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.|++... ...+....+.|+|||++++.
T Consensus 97 ~i~~~~~---------~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 97 VLVTAVS---------NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEECCSC---------HHHHHHHHTTEEEEEEEEEC
T ss_pred ccccccc---------chHHHHHHHHhcCCcEEEEE
Confidence 4443221 23567788999999998875
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.33 Score=39.31 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=55.6
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC--CCceEEEEecCCCCCCC------CCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK--PDRCHAFVCDVTSEDWN------PPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~v~~~~~d~~~~~~~------~~~~~~ 179 (352)
++.+|=-|+++| ++..+++.+...|++|+++|.++..++.+.+.+... +.++.++.+|+.+...- ..-.-+
T Consensus 10 ~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g 88 (257)
T d1xg5a_ 10 DRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 88 (257)
T ss_dssp TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 788999998876 455566655448999999999999888876665543 24678889999863200 000125
Q ss_pred cceEEEehhh
Q psy11741 180 SLDIVLLIFV 189 (352)
Q Consensus 180 ~fD~V~~~~~ 189 (352)
..|+++.+..
T Consensus 89 ~iD~lVnnAg 98 (257)
T d1xg5a_ 89 GVDICINNAG 98 (257)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEeccc
Confidence 6898887543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.00 E-value=0.02 Score=43.59 Aligned_cols=96 Identities=20% Similarity=0.247 Sum_probs=59.6
Q ss_pred CCCCeEEEEcCC--ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC--CCCCC
Q psy11741 106 CSTKNILEIGCG--VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP--PFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~GcG--~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~--~~~~~ 179 (352)
.++.+||=+||+ .|..+..+++.. ....|+++|.++.-++.+++.-. . ..+ |...... .. ....+
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~--g~~~V~~~~~~~~~~~~~~~~Ga----~-~~i--~~~~~~~~~~~~~~~~~~ 96 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAV--SGATIIGVDVREEAVEAAKRAGA----D-YVI--NASMQDPLAEIRRITESK 96 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHH--TCCEEEEEESSHHHHHHHHHHTC----S-EEE--ETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEEeccccceeeeeeccccc--ccccccccccchhhHHHHHHcCC----c-eee--ccCCcCHHHHHHHHhhcc
Confidence 347899999973 445566666654 44689999999999999887521 1 111 1111100 00 01235
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.+|+|+....- ...++.+.+.++|||.+++.
T Consensus 97 ~~d~vid~~g~--------~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 97 GVDAVIDLNNS--------EKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp CEEEEEESCCC--------HHHHTTGGGGEEEEEEEEEC
T ss_pred cchhhhccccc--------chHHHhhhhhcccCCEEEEe
Confidence 69988864321 23456678899999998875
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.17 Score=42.76 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=50.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeE-EEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVF-VYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLL 186 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~ 186 (352)
+.+|+|+-||.|.+...+-... -..+ +.++|+++.+++..+.+.. ...++..|+.+... ..++...+|+++.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG--~~~~~~~a~E~~~~a~~~~~~n~~----~~~~~~~di~~~~~-~~~~~~~~Dll~g 74 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESC--IPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGITL-EEFDRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHT--CSEEEEEEECCCHHHHHHHHHHCT----TSCEECSCGGGCCH-HHHHHHCCSEEEE
T ss_pred CCEEEEcCcCccHHHHHHHHcC--CCCeEEEEEECCHHHHHHHHHHCC----CCCcccCchhhCCH-hHcCCCCccEEEe
Confidence 5689999999999887775532 2233 6789999999998887753 34566777764321 0112236899988
Q ss_pred hhh
Q psy11741 187 IFV 189 (352)
Q Consensus 187 ~~~ 189 (352)
..-
T Consensus 75 gpP 77 (343)
T d1g55a_ 75 SPP 77 (343)
T ss_dssp CCC
T ss_pred ecc
Confidence 443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.57 E-value=0.049 Score=41.10 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCccccH-HHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C-CCCCCcce
Q psy11741 107 STKNILEIGCGVGNSV-FPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P-PFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~-~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~-~~~~~~fD 182 (352)
++.+||=.|||+-..+ ..+++. .+.+|+++|.++.-++.+++.-. ... .|..+.... + ....+.+|
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~---~g~~v~~~~~~~~r~~~~k~~Ga------~~~-~~~~~~~~~~~~~~~~~~~~~ 96 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKA---MGLNVVAVDIGDEKLELAKELGA------DLV-VNPLKEDAAKFMKEKVGGVHA 96 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHTTC------SEE-ECTTTSCHHHHHHHHHSSEEE
T ss_pred CCCEEEEeecccchhhhhHHHhc---CCCeEeccCCCHHHhhhhhhcCc------cee-cccccchhhhhcccccCCCce
Confidence 4789999998775433 344443 67799999999999999887521 111 122111000 0 00123445
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|++. .. ...+....++|+|||.+++.-
T Consensus 97 ~v~~~-----~~----~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 97 AVVTA-----VS----KPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp EEESS-----CC----HHHHHHHHHHEEEEEEEEECC
T ss_pred EEeec-----CC----HHHHHHHHHHhccCCceEecc
Confidence 55432 11 245778889999999988853
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=92.51 E-value=0.09 Score=42.52 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCC--C------------------------------------CeEEEEEeCCHHHHH
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKN--D------------------------------------NVFVYGCDFSENAVN 147 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~--~------------------------------------~~~v~gvD~s~~~l~ 147 (352)
.++..++|..||+|++.+..+-...+ | ...++|.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 34667999999999998876552210 0 124578999999999
Q ss_pred HHH---hccccC--CCceEEEEecCCCCCCCC-CCCCCcceEEEehhhh-hcc------ChhHHHHHHHHHHHhcCCCEE
Q psy11741 148 ILK---EHEEYK--PDRCHAFVCDVTSEDWNP-PFAPESLDIVLLIFVL-DAI------NPNKMQHVINQVYKYLKPGGM 214 (352)
Q Consensus 148 ~a~---~~~~~~--~~~v~~~~~d~~~~~~~~-~~~~~~fD~V~~~~~l-~~~------~~~~~~~~l~~~~~~LkpgG~ 214 (352)
.|+ +++... ...+.+.+.|+.+..... ..+....++|+++=-. +-+ ..+.+..+...+.+++.....
T Consensus 129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~ 208 (249)
T d1o9ga_ 129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 208 (249)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcE
Confidence 884 454432 356888899986421000 0123557899984311 111 124566777788888866666
Q ss_pred EEEEe
Q psy11741 215 VLFRD 219 (352)
Q Consensus 215 l~~~~ 219 (352)
++++.
T Consensus 209 ~~it~ 213 (249)
T d1o9ga_ 209 IAVTD 213 (249)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 66653
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.23 E-value=0.098 Score=37.56 Aligned_cols=93 Identities=10% Similarity=-0.009 Sum_probs=60.0
Q ss_pred CCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhhhccCh
Q psy11741 116 CGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVLDAINP 195 (352)
Q Consensus 116 cG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l~~~~~ 195 (352)
||.|..+..+++.+ .+..++.+|.++...+.++.. .+.++.+|..+...-....-.+.+.+++.. +.
T Consensus 6 ~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~ 72 (129)
T d2fy8a1 6 CGWSESTLECLREL--RGSEVFVLAEDENVRKKVLRS------GANFVHGDPTRVSDLEKANVRGARAVIVNL-----ES 72 (129)
T ss_dssp ESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHT------TCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SS
T ss_pred ECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhc------CccccccccCCHHHHHHhhhhcCcEEEEec-----cc
Confidence 56678899999988 566788899999988776543 368889998764211111234577777632 22
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEEeCC
Q psy11741 196 NKMQHVINQVYKYLKPGGMVLFRDYG 221 (352)
Q Consensus 196 ~~~~~~l~~~~~~LkpgG~l~~~~~~ 221 (352)
+.....+....+.+.|...++.....
T Consensus 73 d~~n~~~~~~~r~~~~~~~iia~~~~ 98 (129)
T d2fy8a1 73 DSETIHCILGIRKIDESVRIIAEAER 98 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEECSS
T ss_pred hhhhHHHHHHHHHHCCCceEEEEEcC
Confidence 33333445556778888877776443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.18 E-value=0.37 Score=38.98 Aligned_cols=113 Identities=16% Similarity=0.052 Sum_probs=70.1
Q ss_pred CCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEE-eCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCC
Q psy11741 105 TCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGC-DFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFA 177 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gv-D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~ 177 (352)
+..+++||=-|.+ +.++..+++.+...|++|+.+ +-++..++.+.+.....+.++.++.+|+.+...- ....
T Consensus 3 ~L~GK~alITGas-~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 3 PLAGKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence 3448888977754 555666665554478888764 6677777777777766677899999999853200 0001
Q ss_pred CCcceEEEehhhhhcc------ChhHH-----------HHHHHHHHHhcCCCEEEEEE
Q psy11741 178 PESLDIVLLIFVLDAI------NPNKM-----------QHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 178 ~~~fD~V~~~~~l~~~------~~~~~-----------~~~l~~~~~~LkpgG~l~~~ 218 (352)
-+..|+++.+....+. +.+++ ..+.+.+...++.+|.+++.
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 2568988885544332 22222 24456666777777766554
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=91.95 E-value=0.46 Score=38.41 Aligned_cols=62 Identities=26% Similarity=0.264 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 169 (352)
+++++|=.|+..| ++..+++.+...|++|+.++.++.-++.+.+.....+.++.+..+|+.+
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~ 66 (258)
T d1ae1a_ 5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS 66 (258)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCC
Confidence 3889999998765 4455555443388999999999998888877777666778888999875
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.17 Score=40.85 Aligned_cols=84 Identities=12% Similarity=0.023 Sum_probs=59.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 180 (352)
.|+.+|=-|+++| ++..++..+...|++|+.+|.+++.++...+.+...+.++..+.+|+++...- .....+.
T Consensus 6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~ 84 (244)
T d1yb1a_ 6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD 84 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 4778888888877 44555555544899999999999999888777776677899999999864210 0001356
Q ss_pred ceEEEehhhhh
Q psy11741 181 LDIVLLIFVLD 191 (352)
Q Consensus 181 fD~V~~~~~l~ 191 (352)
.|+++.+..+.
T Consensus 85 idilinnag~~ 95 (244)
T d1yb1a_ 85 VSILVNNAGVV 95 (244)
T ss_dssp CSEEEECCCCC
T ss_pred CceeEeecccc
Confidence 88888755443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=91.62 E-value=0.073 Score=40.44 Aligned_cols=96 Identities=10% Similarity=0.102 Sum_probs=60.1
Q ss_pred CCCeEEEEcCCcccc-HHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC--C-CCCCCcce
Q psy11741 107 STKNILEIGCGVGNS-VFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN--P-PFAPESLD 182 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~-~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~--~-~~~~~~fD 182 (352)
++.+||=+|||.... +..+++.. ....++++|.++.-++.+++.... .++ |..+.... . ......+|
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~--g~~~vv~~~~~~~k~~~~~~~ga~-----~~i--~~~~~~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVM--TPATVIALDVKEEKLKLAERLGAD-----HVV--DARRDPVKQVMELTRGRGVN 102 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH--CCCEEEEEESSHHHHHHHHHTTCS-----EEE--ETTSCHHHHHHHHTTTCCEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHhh--cCcccccccchhHHHHHHhhcccc-----eee--cCcccHHHHHHHhhCCCCce
Confidence 478999999976554 45566554 445889999999999988875321 222 22111000 0 01134589
Q ss_pred EEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 183 IVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 183 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+|+-... -...++...+.|++||.+++.-
T Consensus 103 ~vid~~g--------~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 103 VAMDFVG--------SQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EEEESSC--------CHHHHHHGGGGEEEEEEEEECC
T ss_pred EEEEecC--------cchHHHHHHHHHhCCCEEEEEe
Confidence 8875432 1235777889999999999853
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.32 E-value=0.14 Score=39.14 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=59.5
Q ss_pred CCeEEEEcCC--ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGCG--VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~GcG--~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+||=-|.+ .|..+..+++. .|++|+++--|+.-.+.+++.-... +--...+..+ ......++.+|+|+
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~---~Ga~Viat~~s~~k~~~~~~lGa~~---vi~~~~~~~~--~~~~~~~~gvD~vi 103 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAK---RGYTVEASTGKAAEHDYLRVLGAKE---VLAREDVMAE--RIRPLDKQRWAAAV 103 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHH---TTCCEEEEESCTTCHHHHHHTTCSE---EEECC-----------CCSCCEEEEE
T ss_pred CCEEEEEeccchHHHHHHHHHHH---cCCceEEecCchHHHHHHHhcccce---eeecchhHHH--HHHHhhccCcCEEE
Confidence 6789888864 45677888876 7889999999988888888753221 1100111110 01122356899987
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
-.-. ...+....+.|+|||+++..-
T Consensus 104 d~vg---------g~~~~~~l~~l~~~Griv~~G 128 (176)
T d1xa0a2 104 DPVG---------GRTLATVLSRMRYGGAVAVSG 128 (176)
T ss_dssp ECST---------TTTHHHHHHTEEEEEEEEECS
T ss_pred EcCC---------chhHHHHHHHhCCCceEEEee
Confidence 5322 113667788999999998854
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.22 E-value=0.3 Score=39.41 Aligned_cols=81 Identities=14% Similarity=0.058 Sum_probs=58.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
++.+|=-|+++| ++..+++.+...|++|+.+|.++..++.+.+.+...+.++.++.+|+++...- ..-.-+..
T Consensus 10 nKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i 88 (251)
T d2c07a1 10 NKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV 88 (251)
T ss_dssp SCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCc
Confidence 677788887665 67777777766899999999999999888777766667789999999863210 00012678
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 89 Dilvnnag 96 (251)
T d2c07a1 89 DILVNNAG 96 (251)
T ss_dssp CEEEECCC
T ss_pred eeeeeccc
Confidence 98887543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.08 E-value=0.89 Score=36.84 Aligned_cols=112 Identities=16% Similarity=0.088 Sum_probs=68.6
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCC-HHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFS-ENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAP 178 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~ 178 (352)
.+++++|=-|+++| ++..+++.+...|++|+.+|.+ ++.++.+.+.....+.++.+.++|+.+...- .....
T Consensus 16 L~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 16 LEGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF 94 (272)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence 34788888888766 4555555554488999999886 4566666555555667789999999853200 00012
Q ss_pred CcceEEEehhhhh------ccChhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 179 ESLDIVLLIFVLD------AINPNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 179 ~~fD~V~~~~~l~------~~~~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
+..|+++.+.... ..+.+++. .+.+.+...|+.+|..++.
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence 5678888744322 22223333 3456667777777766654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=91.02 E-value=0.22 Score=40.47 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 180 (352)
+++.+|=-|.++| ++..+++.+...|++|+.+|.+++.++.+.+.+...+.++..+.+|+.+...- ..-.-+.
T Consensus 4 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (260)
T d1zema1 4 NGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK 82 (260)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 3788888887665 45555555544889999999999999888877766667889999999863200 0001257
Q ss_pred ceEEEehh
Q psy11741 181 LDIVLLIF 188 (352)
Q Consensus 181 fD~V~~~~ 188 (352)
.|+++.+.
T Consensus 83 iDilVnna 90 (260)
T d1zema1 83 IDFLFNNA 90 (260)
T ss_dssp CCEEEECC
T ss_pred CCeehhhh
Confidence 89888643
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=90.89 E-value=0.022 Score=43.05 Aligned_cols=98 Identities=11% Similarity=0.113 Sum_probs=62.1
Q ss_pred CCCeEEEEcCCcc-ccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 107 STKNILEIGCGVG-NSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 107 ~~~~vLD~GcG~G-~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
++.+|+=||+|.- ..+...+.. -|++|+++|.++..++..+.... .++.+...+-.. +...-...|+|+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~---lGA~V~~~D~~~~~l~~l~~~~~---~~~~~~~~~~~~----l~~~~~~aDivI 100 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVG---LGAQVQIFDINVERLSYLETLFG---SRVELLYSNSAE----IETAVAEADLLI 100 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHG---GGSEEEECCHHH----HHHHHHTCSEEE
T ss_pred CCcEEEEECCChHHHHHHHHHhh---CCCEEEEEeCcHHHHHHHHHhhc---ccceeehhhhhh----HHHhhccCcEEE
Confidence 4789999999974 444555554 67899999999999988776643 234444333211 110123589999
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVL 216 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (352)
..-.+--- .-+.-+-+++.+.+|||.+++
T Consensus 101 ~aalipG~--~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 101 GAVLVPGR--RAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp ECCCCTTS--SCCCCBCHHHHTTSCTTCEEE
T ss_pred EeeecCCc--ccCeeecHHHHhhcCCCcEEE
Confidence 86543211 223334467888899987654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.88 E-value=0.43 Score=38.88 Aligned_cols=111 Identities=11% Similarity=-0.069 Sum_probs=71.3
Q ss_pred CCeEEEEcCCccccHHHHHhhcCC-CCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC------CCCCCCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKN-DNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW------NPPFAPES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 180 (352)
+++|-=|=.|++.++..+++.+.. .+.+|+.++.+++.++.+.+.++..+.++.++.+|+.+... ...-.-+.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 667744444444556666555422 47899999999999988887776666788999999986321 00001257
Q ss_pred ceEEEehhhhhccC------hhHHH-----------HHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDAIN------PNKMQ-----------HVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~~~------~~~~~-----------~~l~~~~~~LkpgG~l~~~ 218 (352)
.|+++.+..+.... .+++. .+.+.+...|+++|.++..
T Consensus 82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni 136 (275)
T d1wmaa1 82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 136 (275)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 99999876543221 11222 3456667788889987764
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.39 E-value=0.075 Score=40.65 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=34.9
Q ss_pred CCCeEEEEcCCccc-cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcc
Q psy11741 107 STKNILEIGCGVGN-SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE 153 (352)
Q Consensus 107 ~~~~vLD~GcG~G~-~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~ 153 (352)
++.+||=||+|.-. .+...|.. -|++|+++|.++..++..+...
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~---lGA~V~v~D~~~~~~~~l~~l~ 72 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKR---LGAVVMATDVRAATKEQVESLG 72 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCSTTHHHHHHTT
T ss_pred CCcEEEEEcCcHHHHHHHHHHHH---cCCEEEEEeccHHHHHHHHHhh
Confidence 47899999999754 44555554 6789999999999998888764
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=90.34 E-value=0.21 Score=43.29 Aligned_cols=52 Identities=12% Similarity=0.168 Sum_probs=42.0
Q ss_pred CCCCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc
Q psy11741 104 DTCSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY 155 (352)
Q Consensus 104 ~~~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 155 (352)
...++..++|||+-.|..+..++........+|+++|+++...+..+++...
T Consensus 209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~ 260 (395)
T d2py6a1 209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 260 (395)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 3445789999999999998888776533456899999999999999887653
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.19 E-value=0.089 Score=40.23 Aligned_cols=94 Identities=20% Similarity=0.217 Sum_probs=58.9
Q ss_pred CCCCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CC--CCCCC
Q psy11741 106 CSTKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NP--PFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~--~~~~~ 179 (352)
.++.+||=.|. |.|..+..+++. .+.++++++-+++-.+.+++.-. . .. .|..+..+ .. .....
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~---~g~~vi~~~~~~~~~~~l~~~Ga----~-~v--i~~~~~~~~~~v~~~t~~~ 93 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKM---IGARIYTTAGSDAKREMLSRLGV----E-YV--GDSRSVDFADEILELTDGY 93 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHTTCC----S-EE--EETTCSTHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCcccccchhhcc---ccccceeeecccccccccccccc----c-cc--ccCCccCHHHHHHHHhCCC
Confidence 34788988773 556677778876 56789998888888888876421 1 11 12222110 00 01245
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.+|+|+.... ...++.+.++|+|+|+++..
T Consensus 94 g~d~v~d~~g---------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 94 GVDVVLNSLA---------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp CEEEEEECCC---------THHHHHHHHTEEEEEEEEEC
T ss_pred CEEEEEeccc---------chHHHHHHHHhcCCCEEEEE
Confidence 7999986432 12456677899999998874
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=90.13 E-value=0.11 Score=39.51 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=60.3
Q ss_pred CCCeEEEEcCC--ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCC----CCCCc
Q psy11741 107 STKNILEIGCG--VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPP----FAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG--~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~----~~~~~ 180 (352)
++.+||=.|+| .|..+..+++. .+++|++++.|+.-.+.+++.-.. . ..|..+..+... -....
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~---~Ga~Vi~~~~s~~k~~~~~~lGa~-----~--vi~~~~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKA---LGAKLIGTVGTAQKAQSALKAGAW-----Q--VINYREEDLVERLKEITGGKK 97 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHHHTCS-----E--EEETTTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEEccccccchHHHHHHHH---hCCeEeecccchHHHHHHHhcCCe-----E--EEECCCCCHHHHHHHHhCCCC
Confidence 47899888666 46677888876 678999999999999998865321 1 123332211000 12456
Q ss_pred ceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 181 LDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 181 fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+|+|+....- + .+......++|+|.+++.
T Consensus 98 ~d~v~d~~g~-----~----~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 98 VRVVYDSVGR-----D----TWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp EEEEEECSCG-----G----GHHHHHHTEEEEEEEEEC
T ss_pred eEEEEeCccH-----H----HHHHHHHHHhcCCeeeec
Confidence 8988764321 1 356678899999987764
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.12 E-value=1.2 Score=37.23 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=72.0
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccc----------------------cCCCceEEEEe
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEE----------------------YKPDRCHAFVC 165 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~----------------------~~~~~v~~~~~ 165 (352)
...|+-+|||.=.....+.... ++..++=+|..+.+-...+. +. ....+...+-+
T Consensus 97 ~~QVV~LGaG~DTr~~Rl~~~~--~~~~~~EvD~p~vi~~K~~~-i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~ 173 (328)
T d1rjda_ 97 KVQVVNLGCGSDLRMLPLLQMF--PHLAYVDIDYNESVELKNSI-LRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 173 (328)
T ss_dssp SEEEEEETCTTCCTHHHHHHHC--TTEEEEEEECHHHHHHHHHH-HHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CcEEEEeCCccchHHHHhhccC--CCcEEEECCcHHHHHHHHHH-HHhchhhhhhccccccccccccccCCCCCeEEEec
Confidence 5689999999998887776654 67778888885543333321 10 01245677888
Q ss_pred cCCCCCCC-----CCCCCCcceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEEeC
Q psy11741 166 DVTSEDWN-----PPFAPESLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFRDY 220 (352)
Q Consensus 166 d~~~~~~~-----~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 220 (352)
|+.+..+. ..+.....-++++-.++.+++++...++++.+.+....+ .+++.+.
T Consensus 174 DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~~-~~i~YE~ 232 (328)
T d1rjda_ 174 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHG-LWISYDP 232 (328)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSE-EEEEEEE
T ss_pred CCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCCc-eEEEecc
Confidence 88753210 112233345788888999999999999999999888654 4554443
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=0.14 Score=37.89 Aligned_cols=101 Identities=7% Similarity=-0.063 Sum_probs=59.3
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+|+=+|+ |..+..+++.+...+..++.+|.++.......+... ...+.++.+|..+...-....-...|.|++..
T Consensus 5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~--~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~- 79 (153)
T d1id1a_ 5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL--GDNADVIPGDSNDSSVLKKAGIDRCRAILALS- 79 (153)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH--CTTCEEEESCTTSHHHHHHHTTTTCSEEEECS-
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh--cCCcEEEEccCcchHHHHHhccccCCEEEEcc-
Confidence 5666655 567777777765477899999999865433222221 24578899998764210111224677777642
Q ss_pred hhccChhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 190 LDAINPNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 190 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
+.+.....+....+-+.|...++...
T Consensus 80 ----~~d~~n~~~~~~~r~~~~~~~iia~~ 105 (153)
T d1id1a_ 80 ----DNDADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp ----SCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred ----ccHHHHHHHHHHHHHhCCCCceEEEE
Confidence 21233333444556677877777653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.46 E-value=0.19 Score=38.08 Aligned_cols=99 Identities=13% Similarity=0.239 Sum_probs=57.3
Q ss_pred CeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEE--ecCCCCCCCCCCCCCcceEE
Q psy11741 109 KNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFV--CDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 109 ~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~--~d~~~~~~~~~~~~~~fD~V 184 (352)
++|-=||+|... ..++..+...|.+|+.+|.++.-++..++.-.. ..+...... ..... .+...-...|+|
T Consensus 2 k~iaIiGaG~~G--~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~aD~i 76 (184)
T d1bg6a2 2 KTYAVLGLGNGG--HAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTS---DIGLAVKDADVI 76 (184)
T ss_dssp CEEEEECCSHHH--HHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEES---CHHHHHTTCSEE
T ss_pred CEEEEECccHHH--HHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhh---hhHhHhcCCCEE
Confidence 467778887654 334333333788999999999888877654211 011111111 11110 000001457888
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
+.. ++......+++++..+|+++..+++
T Consensus 77 ii~-----v~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 77 LIV-----VPAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp EEC-----SCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EEE-----EchhHHHHHHHHhhhccCCCCEEEE
Confidence 863 2445678899999999999886654
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=89.27 E-value=0.026 Score=43.09 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCCeEEEEcC-C-ccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEE
Q psy11741 107 STKNILEIGC-G-VGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~Gc-G-~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 184 (352)
++.+||=.|. | .|..+..+++. .|++|++++.++.-++.+++.-. . ..+ |..+...... ....+|+|
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~---~G~~vi~~~~~~~~~~~~~~lGa---~-~~i---~~~~~~~~~~-~~~g~D~v 95 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARA---MGLRVLAAASRPEKLALPLALGA---E-EAA---TYAEVPERAK-AWGGLDLV 95 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH---TTCEEEEEESSGGGSHHHHHTTC---S-EEE---EGGGHHHHHH-HTTSEEEE
T ss_pred CCCEEEEEeccccchhhhhhhhcc---ccccccccccccccccccccccc---c-eee---ehhhhhhhhh-cccccccc
Confidence 4788998884 3 35677777776 67799999999988888876421 1 111 2221100111 13569998
Q ss_pred EehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 185 LLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 185 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
+-.. . + .+....+.|+|+|.++..
T Consensus 96 ~d~~-----G-~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 96 LEVR-----G-K----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EECS-----C-T----THHHHHTTEEEEEEEEEC
T ss_pred cccc-----c-h----hHHHHHHHHhcCCcEEEE
Confidence 8521 1 1 245677899999998864
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.04 E-value=0.37 Score=38.91 Aligned_cols=81 Identities=20% Similarity=0.117 Sum_probs=57.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
++++|=-|.+. .++..+++.+...|++|+.+|.+++.++.+.+.+...+.++.++.+|+.+...- ....-+..
T Consensus 11 gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~i 89 (255)
T d1fmca_ 11 GKCAIITGAGA-GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV 89 (255)
T ss_dssp TCEEEETTTTS-HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 77778666555 466667766655899999999999988888777766667788999999863210 00011578
Q ss_pred eEEEehhh
Q psy11741 182 DIVLLIFV 189 (352)
Q Consensus 182 D~V~~~~~ 189 (352)
|+++.+..
T Consensus 90 DilvnnAG 97 (255)
T d1fmca_ 90 DILVNNAG 97 (255)
T ss_dssp CEEEECCC
T ss_pred CEeeeCCc
Confidence 98887543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=88.38 E-value=0.41 Score=38.74 Aligned_cols=82 Identities=22% Similarity=0.176 Sum_probs=57.4
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC------CC-CCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW------NP-PFAPE 179 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~------~~-~~~~~ 179 (352)
+++++|=-|+++| +...+++.+...|++|+.+|.+++.++.+.+.....+.++.++.+|+.+... .. ..-.+
T Consensus 7 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~ 85 (259)
T d2ae2a_ 7 EGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 85 (259)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 3788888887765 4555555554488999999999999988877776666778899999985321 00 00124
Q ss_pred cceEEEehhh
Q psy11741 180 SLDIVLLIFV 189 (352)
Q Consensus 180 ~fD~V~~~~~ 189 (352)
..|+++.+..
T Consensus 86 ~idilvnnAG 95 (259)
T d2ae2a_ 86 KLNILVNNAG 95 (259)
T ss_dssp CCCEEEECCC
T ss_pred CceEEEECCc
Confidence 6899887543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=88.31 E-value=0.3 Score=37.12 Aligned_cols=94 Identities=18% Similarity=0.154 Sum_probs=60.9
Q ss_pred CCCCeEEEEcCCc--cccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC---C-CCCCC
Q psy11741 106 CSTKNILEIGCGV--GNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN---P-PFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~GcG~--G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~---~-~~~~~ 179 (352)
.++.+||=.|+++ |..+..+++. .+++|++++-+++..+.+++.-.. ..+ |..+.... + ....+
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~---~Ga~vi~~~~~~~~~~~~~~~Ga~-----~vi--~~~~~~~~~~~~~~~~~~ 97 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKL---KGCKVVGAAGSDEKIAYLKQIGFD-----AAF--NYKTVNSLEEALKKASPD 97 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHTTCS-----EEE--ETTSCSCHHHHHHHHCTT
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHc---cCCEEEEeCCCHHHHHHHHhhhhh-----hhc--ccccccHHHHHHHHhhcC
Confidence 4588999878755 4566777776 678999999999988888776321 111 11111100 0 01235
Q ss_pred cceEEEehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 180 SLDIVLLIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 180 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.+|+|+-. +. ...++...+.|+|+|.+++.
T Consensus 98 Gvd~v~D~-----vG----~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 98 GYDCYFDN-----VG----GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp CEEEEEES-----SC----HHHHHHHGGGEEEEEEEEEC
T ss_pred CCceeEEe-----cC----chhhhhhhhhccCCCeEEee
Confidence 69998753 22 23567889999999998874
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.49 E-value=0.42 Score=38.70 Aligned_cols=82 Identities=21% Similarity=0.173 Sum_probs=57.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------C-CCCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------P-PFAPE 179 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~-~~~~~ 179 (352)
+++++|=-|+++| ++..+++.+...|++|+.+|.++..++.+.+.....+.++....+|+.+.... . ..-.+
T Consensus 7 kgK~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g 85 (259)
T d1xq1a_ 7 KAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG 85 (259)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence 3788888887766 45555555544889999999999988888777666566789999999853210 0 00025
Q ss_pred cceEEEehhh
Q psy11741 180 SLDIVLLIFV 189 (352)
Q Consensus 180 ~fD~V~~~~~ 189 (352)
..|+++.+..
T Consensus 86 ~idilvnnAG 95 (259)
T d1xq1a_ 86 KLDILINNLG 95 (259)
T ss_dssp CCSEEEEECC
T ss_pred Cccccccccc
Confidence 7899888543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=86.38 E-value=0.84 Score=34.45 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=58.8
Q ss_pred CCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+.+||=.|. |.|..+..+++. .|++|+++.-+++..+.+++.-.. .++ |..+..+...+....+|.|+
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~---~Ga~Via~~~~~~k~~~~~~lGad-----~vi--~~~~~~~~~~l~~~~~~~vv 101 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHK---LGYQVVAVSGRESTHEYLKSLGAS-----RVL--PRDEFAESRPLEKQVWAGAI 101 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHH---TTCCEEEEESCGGGHHHHHHHTEE-----EEE--EGGGSSSCCSSCCCCEEEEE
T ss_pred CCcEEEEEccccchHHHHHHHHH---cCCCeEEEecchhHHHHHHhhccc-----ccc--ccccHHHHHHHHhhcCCeeE
Confidence 446776553 355677788877 688999999999988888765321 122 22222122233456688875
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
- .+. ...+....+.|+++|.++..
T Consensus 102 D-----~Vg----g~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 102 D-----TVG----DKVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp E-----SSC----HHHHHHHHHTEEEEEEEEEC
T ss_pred E-----Ecc----hHHHHHHHHHhccccceEee
Confidence 2 222 23577888999999999885
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.41 E-value=0.13 Score=42.15 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=35.7
Q ss_pred EEEEecCCCCCCCCCCCCCcceEEEehh----hhhc----cC-hhHHHHHHHHHHHhcCCCEEEEEEe
Q psy11741 161 HAFVCDVTSEDWNPPFAPESLDIVLLIF----VLDA----IN-PNKMQHVINQVYKYLKPGGMVLFRD 219 (352)
Q Consensus 161 ~~~~~d~~~~~~~~~~~~~~fD~V~~~~----~l~~----~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 219 (352)
.++.+|..+... .++++++|+|+..= .... .+ .+.....+.++.++|||||.+++..
T Consensus 6 ~~~~~D~le~l~--~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 6 VYDVCDCLDTLA--KLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEECCHHHHHH--TSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHh--hCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 355666654321 24578888888721 1110 00 1446778899999999999998854
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=85.33 E-value=0.71 Score=36.74 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEEE
Q psy11741 197 KMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 197 ~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
.....++++.++|+|||.+++.
T Consensus 52 ~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 52 FTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhhhccccCcccccc
Confidence 3557889999999999988764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=84.83 E-value=0.95 Score=36.58 Aligned_cols=81 Identities=17% Similarity=0.062 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 180 (352)
+++.+|=-|+++| ++..+++.+...|++|+.+|.++..++.+.+.... ...+.++.+|+.+...- ....-+.
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTIAKHGK 82 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3788999998776 55666665544889999999999988877766543 34578889999853200 0001257
Q ss_pred ceEEEehhh
Q psy11741 181 LDIVLLIFV 189 (352)
Q Consensus 181 fD~V~~~~~ 189 (352)
.|+++.+..
T Consensus 83 iD~lVnnAG 91 (268)
T d2bgka1 83 LDIMFGNVG 91 (268)
T ss_dssp CCEEEECCC
T ss_pred cceeccccc
Confidence 899887543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=84.14 E-value=0.4 Score=35.99 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=59.7
Q ss_pred CCeEEEEcC--CccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEE
Q psy11741 108 TKNILEIGC--GVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVL 185 (352)
Q Consensus 108 ~~~vLD~Gc--G~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~ 185 (352)
+..||=-|+ |-|..+..+++. .|++|+++.-|++-.+.+++.-.. ......|..... ......+.+|+|+
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~---~Ga~Viat~~s~~k~~~~~~lGad----~vi~~~~~~~~~-~~~~~~~gvd~vi 95 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNK---RGYDVVASTGNREAADYLKQLGAS----EVISREDVYDGT-LKALSKQQWQGAV 95 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHH---HTCCEEEEESSSSTHHHHHHHTCS----EEEEHHHHCSSC-CCSSCCCCEEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHHHH---cCCceEEEecCHHHHHHHHhhccc----ceEeccchhchh-hhcccCCCceEEE
Confidence 456876664 456688888887 567999999998888888765321 112222221111 1122356799987
Q ss_pred ehhhhhccChhHHHHHHHHHHHhcCCCEEEEEE
Q psy11741 186 LIFVLDAINPNKMQHVINQVYKYLKPGGMVLFR 218 (352)
Q Consensus 186 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 218 (352)
-. +. ...+.+..+.|+|+|++++.
T Consensus 96 d~-----vg----g~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 96 DP-----VG----GKQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp ES-----CC----THHHHHHHTTEEEEEEEEEC
T ss_pred ec-----Cc----HHHHHHHHHHhccCceEEEe
Confidence 53 22 23567788999999998874
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.02 E-value=0.76 Score=36.92 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=53.0
Q ss_pred EEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcceEE
Q psy11741 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESLDIV 184 (352)
Q Consensus 111 vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~fD~V 184 (352)
+|=-|++.| ++..+++.+...|++|+.+|.+++.++.+.+.+...+.++.++.+|+.+...- ....-+..|++
T Consensus 4 alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 82 (255)
T d1gega_ 4 ALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVI 82 (255)
T ss_dssp EEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEcCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence 365676654 55666665544889999999999998888777666667788999999863210 00012678988
Q ss_pred Eehh
Q psy11741 185 LLIF 188 (352)
Q Consensus 185 ~~~~ 188 (352)
+.+.
T Consensus 83 VnnA 86 (255)
T d1gega_ 83 VNNA 86 (255)
T ss_dssp EECC
T ss_pred Eecc
Confidence 8744
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.73 E-value=1.1 Score=35.70 Aligned_cols=80 Identities=16% Similarity=-0.011 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPE 179 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~ 179 (352)
.+++++|=-|++.| +...+++.+...|++|+.+|.+++.++.+.+... .++.++.+|+.+...- ....-+
T Consensus 4 L~gK~alITGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 79 (244)
T d1nffa_ 4 LTGKVALVSGGARG-MGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA---DAARYVHLDVTQPAQWKAAVDTAVTAFG 79 (244)
T ss_dssp TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG---GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---CcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 34788898898776 4555555554488999999999988877665543 4578889999863200 000115
Q ss_pred cceEEEehhh
Q psy11741 180 SLDIVLLIFV 189 (352)
Q Consensus 180 ~fD~V~~~~~ 189 (352)
..|+++.+..
T Consensus 80 ~idilinnAG 89 (244)
T d1nffa_ 80 GLHVLVNNAG 89 (244)
T ss_dssp CCCEEEECCC
T ss_pred CCeEEEECCc
Confidence 6898887543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.59 E-value=0.78 Score=37.23 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=54.2
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccC---CCceEEEEecCCCCCCC------CCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYK---PDRCHAFVCDVTSEDWN------PPFAP 178 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~---~~~v~~~~~d~~~~~~~------~~~~~ 178 (352)
++++|=-|+++| ++..+++.+...|++|+.+|.+++.++.+.+.+... ..++.++.+|+.+...- ....-
T Consensus 5 gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 83 (272)
T d1xkqa_ 5 NKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF 83 (272)
T ss_dssp TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 778888887665 555555555448899999999999888877765442 24688999999863210 00011
Q ss_pred CcceEEEehh
Q psy11741 179 ESLDIVLLIF 188 (352)
Q Consensus 179 ~~fD~V~~~~ 188 (352)
+..|+++.+.
T Consensus 84 g~iDilvnnA 93 (272)
T d1xkqa_ 84 GKIDVLVNNA 93 (272)
T ss_dssp SCCCEEEECC
T ss_pred CCceEEEeCC
Confidence 5689888754
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=83.12 E-value=0.92 Score=36.42 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=55.1
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCcc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPESL 181 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~f 181 (352)
++.+|=-|++.| ++..+++.+...|++|+.+|.+++.++.+.+.+...+.++.++.+|+++...- ....-++.
T Consensus 2 gKValITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 80 (257)
T d2rhca1 2 SEVALVTGATSG-IGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV 80 (257)
T ss_dssp CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 455576776555 45666665544889999999999998888777666667889999999864210 00012678
Q ss_pred eEEEehh
Q psy11741 182 DIVLLIF 188 (352)
Q Consensus 182 D~V~~~~ 188 (352)
|+++.+.
T Consensus 81 DilVnnA 87 (257)
T d2rhca1 81 DVLVNNA 87 (257)
T ss_dssp SEEEECC
T ss_pred CEEEecc
Confidence 9888754
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.90 E-value=3.6 Score=33.55 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=45.1
Q ss_pred CCCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc-----CCCceEEEEecCCC
Q psy11741 106 CSTKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY-----KPDRCHAFVCDVTS 169 (352)
Q Consensus 106 ~~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~ 169 (352)
.+++.+|=-|+++| ++..+++.+...|++|+.+|.+++.++.+.+.+.. .+.++.++.+|+.+
T Consensus 10 L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~ 77 (297)
T d1yxma1 10 LQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN 77 (297)
T ss_dssp TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC
Confidence 34888998887776 55555555544889999999999887766544321 24568888899875
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.85 E-value=0.22 Score=40.03 Aligned_cols=49 Identities=22% Similarity=0.142 Sum_probs=31.2
Q ss_pred ccccchHHHHHHHhhcCchhhhhhhhhhhhhccccccceeeeeeehhccCC
Q psy11741 300 HYLFVTEEVKTMFESAGFVEKQNLIDRRLQVNRGKQIKMYRVWIQAKYMKP 350 (352)
Q Consensus 300 ~~~~~~~el~~~l~~aGF~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 350 (352)
.++++.++++++|++|||+++++..... ..+........+.|+.|+ +||
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v~~~~~~~~-~~~~~~~~~~~~~~v~ar-Kkp 257 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDIEQLLHSPQ-SYSVTNAANNGVCCIVAR-KKP 257 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEECC-CCCTTTCCCCCEEEEEEE-ECC
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEEEecc-ccccccCCCCcEEEEEEE-eCc
Confidence 5678999999999999999887642211 112222222345677777 455
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=82.83 E-value=4.1 Score=32.00 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=44.0
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCC
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTS 169 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 169 (352)
.++.+|=.|++.| ++..+++.+...|++|+.++.+...++...+.. +.++.++++|+.+
T Consensus 4 ~gK~alItGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dls~ 62 (241)
T d2a4ka1 4 SGKTILVTGAASG-IGRAALDLFAREGASLVAVDREERLLAEAVAAL---EAEAIAVVADVSD 62 (241)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC---CSSEEEEECCTTS
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---CCceEEEEecCCC
Confidence 3788888888865 555566555448999999999998777665543 4567888899875
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=82.80 E-value=0.71 Score=34.77 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=35.4
Q ss_pred CCCCCeEEEEcCCccc-cHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcc
Q psy11741 105 TCSTKNILEIGCGVGN-SVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE 153 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~-~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~ 153 (352)
.+++.+||=+|||... .+..+++.. ...+|+++|.+++-++.|++.-
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~--G~~~Vi~vd~~~~kl~~Ak~~G 74 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSA--GASRIIGIDLNKDKFEKAMAVG 74 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHHT
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHc--CCceEEEecCcHHHHHHHHhcC
Confidence 3458899999998655 444455543 3368999999999999999874
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=82.19 E-value=0.6 Score=34.56 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=51.8
Q ss_pred EEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhhh
Q psy11741 111 ILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFVL 190 (352)
Q Consensus 111 vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~l 190 (352)
|-=||+ |..+..+++.+...+.+|++.|.++..++...+... . ...+..+ .-...|+|++.-.
T Consensus 3 IgiIGl--G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~------~-~~~~~~e-------~~~~~d~ii~~v~- 65 (161)
T d1vpda2 3 VGFIGL--GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGA------E-TASTAKA-------IAEQCDVIITMLP- 65 (161)
T ss_dssp EEEECC--STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC------E-ECSSHHH-------HHHHCSEEEECCS-
T ss_pred EEEEeh--hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhh------h-hcccHHH-------HHhCCCeEEEEcC-
Confidence 344555 556677776664488999999999998887765421 1 1111110 0235688876321
Q ss_pred hccChhHHHHHH---HHHHHhcCCCEEEEE
Q psy11741 191 DAINPNKMQHVI---NQVYKYLKPGGMVLF 217 (352)
Q Consensus 191 ~~~~~~~~~~~l---~~~~~~LkpgG~l~~ 217 (352)
+++....++ ..+...++||..++-
T Consensus 66 ---~~~~v~~v~~~~~~~~~~~~~g~iiid 92 (161)
T d1vpda2 66 ---NSPHVKEVALGENGIIEGAKPGTVLID 92 (161)
T ss_dssp ---SHHHHHHHHHSTTCHHHHCCTTCEEEE
T ss_pred ---CHHHHHHHHhCCcchhhccCCCCEEEE
Confidence 345555555 457778888755443
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=81.85 E-value=1.3 Score=35.49 Aligned_cols=80 Identities=15% Similarity=0.016 Sum_probs=52.9
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCC------CCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWN------PPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~------~~~~~~ 179 (352)
++.+|=-|+++| ++..+++.+...|++|+.+|.+++.++.+.+.... .+.++.++.+|+.+...- ....-+
T Consensus 4 gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 82 (258)
T d1iy8a_ 4 DRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG 82 (258)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 778888888776 44444444433889999999999988877655433 335688889999863210 000115
Q ss_pred cceEEEehh
Q psy11741 180 SLDIVLLIF 188 (352)
Q Consensus 180 ~fD~V~~~~ 188 (352)
..|+++.+.
T Consensus 83 ~iDiLVnnA 91 (258)
T d1iy8a_ 83 RIDGFFNNA 91 (258)
T ss_dssp CCSEEEECC
T ss_pred CCCEEEECC
Confidence 789988754
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=81.77 E-value=0.78 Score=34.49 Aligned_cols=96 Identities=10% Similarity=0.100 Sum_probs=53.7
Q ss_pred eEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCCCCCCCCcceEEEehhh
Q psy11741 110 NILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWNPPFAPESLDIVLLIFV 189 (352)
Q Consensus 110 ~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V~~~~~ 189 (352)
+|-=||+ |.....++..+...+++|++.|.++..++...++...... . .....+.. +...-...|.++....
T Consensus 4 nIg~IGl--G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~-~-~~a~~~~~----~~~~~~~~~~ii~~~~ 75 (176)
T d2pgda2 4 DIALIGL--AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTK-V-LGAHSLEE----MVSKLKKPRRIILLVK 75 (176)
T ss_dssp SEEEECC--SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSS-C-EECSSHHH----HHHHBCSSCEEEECSC
T ss_pred cEEEEeE--hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcccccc-c-cchhhhhh----hhhhhcccceEEEecC
Confidence 4555666 4566666666654888999999999888776554321110 0 00001100 0000123455554221
Q ss_pred hhccChhHHHHHHHHHHHhcCCCEEEEE
Q psy11741 190 LDAINPNKMQHVINQVYKYLKPGGMVLF 217 (352)
Q Consensus 190 l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 217 (352)
+.+....++..+...++||-+++-
T Consensus 76 ----~~~~v~~v~~~l~~~~~~g~iiid 99 (176)
T d2pgda2 76 ----AGQAVDNFIEKLVPLLDIGDIIID 99 (176)
T ss_dssp ----TTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred ----chHHHHHHHHHHHhccccCcEEEe
Confidence 335667788899999998865443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.74 E-value=1.1 Score=35.92 Aligned_cols=84 Identities=19% Similarity=0.061 Sum_probs=56.7
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcccc--CCCceEEEEecCCCCCCC------CCCCCC
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEY--KPDRCHAFVCDVTSEDWN------PPFAPE 179 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~v~~~~~d~~~~~~~------~~~~~~ 179 (352)
++.+|=-|+++| ++..+++.+...|++|+.+|.+++.++.+.+.... .+.++.++.+|+++...- ....-+
T Consensus 3 GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 3 GKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 678888887765 56666666544899999999999888877665433 245788899999863210 000115
Q ss_pred cceEEEehhhhhc
Q psy11741 180 SLDIVLLIFVLDA 192 (352)
Q Consensus 180 ~fD~V~~~~~l~~ 192 (352)
..|+++.+.....
T Consensus 82 ~iDilVnnAg~~~ 94 (254)
T d2gdza1 82 RLDILVNNAGVNN 94 (254)
T ss_dssp CCCEEEECCCCCC
T ss_pred CcCeecccccccc
Confidence 7899888665443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=81.10 E-value=0.96 Score=33.75 Aligned_cols=46 Identities=9% Similarity=0.003 Sum_probs=34.7
Q ss_pred CCCCCeEEEEcCCccccH-HHHHhhcCCCCeEEEEEeCCHHHHHHHHhc
Q psy11741 105 TCSTKNILEIGCGVGNSV-FPIVEHCKNDNVFVYGCDFSENAVNILKEH 152 (352)
Q Consensus 105 ~~~~~~vLD~GcG~G~~~-~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~ 152 (352)
..++.+||=+|||.+... ..+++.. .+..|+++|.++.-++.|++.
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~--g~~~Vi~~~~~~~rl~~a~~~ 72 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSA--GAKRIIAVDLNPDKFEKAKVF 72 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHT
T ss_pred CCCCCEEEEEecCCccchHHHHHHHH--hhchheeecchHHHHHHHHHc
Confidence 345889999999986544 4444443 556899999999999998875
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=81.04 E-value=1.4 Score=35.22 Aligned_cols=81 Identities=15% Similarity=0.041 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCCC------CCCCCCc
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDWN------PPFAPES 180 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 180 (352)
+++.+|=-|++.| ++..+++.+...|++|+.+|.+++.++.+.+.... +.++.++.+|+.+...- ....-+.
T Consensus 5 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 82 (251)
T d1zk4a1 5 DGKVAIITGGTLG-IGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 3778888886655 55555555544889999999999988887766543 45788999999863210 0001157
Q ss_pred ceEEEehhh
Q psy11741 181 LDIVLLIFV 189 (352)
Q Consensus 181 fD~V~~~~~ 189 (352)
.|+++.+..
T Consensus 83 iDiLVnnAg 91 (251)
T d1zk4a1 83 VSTLVNNAG 91 (251)
T ss_dssp CCEEEECCC
T ss_pred ceEEEeccc
Confidence 898887543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=80.83 E-value=1.3 Score=35.37 Aligned_cols=81 Identities=19% Similarity=0.050 Sum_probs=53.8
Q ss_pred CCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhcc-ccCCCceEEEEecCCCCCCC------CCCCCCc
Q psy11741 108 TKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHE-EYKPDRCHAFVCDVTSEDWN------PPFAPES 180 (352)
Q Consensus 108 ~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 180 (352)
++++|=-|++.| ++..+++.+...|++|+.+|.+++.++.+.+.. ...+.++.++.+|+.+...- ....-+.
T Consensus 5 gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 83 (251)
T d1vl8a_ 5 GRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK 83 (251)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 788898888766 455555555448899999999988777665443 23456788899999853200 0001157
Q ss_pred ceEEEehhh
Q psy11741 181 LDIVLLIFV 189 (352)
Q Consensus 181 fD~V~~~~~ 189 (352)
.|+++.+..
T Consensus 84 iDiLVnnAG 92 (251)
T d1vl8a_ 84 LDTVVNAAG 92 (251)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 899887543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.62 E-value=1.6 Score=34.64 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCccccHHHHHhhcCCCCeEEEEEeCCHHHHHHHHhccccCCCceEEEEecCCCCCC--CCCCCCCcceEE
Q psy11741 107 STKNILEIGCGVGNSVFPIVEHCKNDNVFVYGCDFSENAVNILKEHEEYKPDRCHAFVCDVTSEDW--NPPFAPESLDIV 184 (352)
Q Consensus 107 ~~~~vLD~GcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~~fD~V 184 (352)
.++++|=-|+++| ++..+++.+...|++|+.+|.++..++...+.. .++..++.|+.+... ..--.-++.|++
T Consensus 6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~g~iDil 80 (244)
T d1pr9a_ 6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC----PGIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc----CCCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence 3889999998766 455555555448899999999998887765543 347788899875320 000112578998
Q ss_pred Eehhh
Q psy11741 185 LLIFV 189 (352)
Q Consensus 185 ~~~~~ 189 (352)
+.+..
T Consensus 81 VnnAg 85 (244)
T d1pr9a_ 81 VNNAA 85 (244)
T ss_dssp EECCC
T ss_pred Eeccc
Confidence 87543
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