Psyllid ID: psy11780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
Protein Sequence
MINLLNAGVNRVKEKHVLLIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIRNM
Secondary Structure (PSIPRED)
cEEEEccccccccccEEEEEEEccEEEEEEEEEEEccccccccccccccEEEEEEEcccccccccEEEEEEEEcccccccccccccccccEEEEEcccccEEEEEEEEEEcccccccEEEEccccEEEEEEccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEEccccccEEEccEEEEEEEccccccEEEEEEEEEEcccccccEEEEEEEccccccEEEEccEEEEEEcccccccccccccccEEEEEEEEEcccccccccccccEEEEEEEccccccccccccccEEEEEEEEEEEEcccccccccccEEEEEEccccccccEEEEEcccccEEcccccccEEEEEEEEcccccEEEEccEEEEEcEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccHcccEEEccccccEEEEEEEEEEcccccccccccccEEEEEEEEEccccccccEEEEEEEccccccccccEEEEcccccccccccccccEEEEEEEEcccccccEEEEEcccccEEEEEEcccccHcccEEEEEEEEEcccccccccccEEEEEEEEEEccccccccccccEEEEEccccccccEEEEEEEEccccccccEEEEEEccccccEEEEEccccEEEEEccccHHHHHHHcccEEEEEEEEcccccccccEEEEEEEEcccccccccccccccccccEEEEEEEEEEcccccccEccccEEEEEccccccccEEEEEEEEEEEEEcccccccEEEEEEEccccccEEEEcccccEEEEEEEccc
Coil and Loop (DISEMBL)
MINLLNAGVNRVKEKHVLLIGTYLLLSAILVdssvsgnraprfiidEQTEIVIRLkegpdtpagtfiyrlrgadpdgdvltfgvqghghdviRIENLNVMLKVVYHLenvdgdekdlfSISTVNGKGVIKLIGKLDYENKFLYQLKILAVdrsnndrrntGTAAILVKVqdvedqppefvAVSSVtrvsedvpvgtSVLQVkavdgdrginnKILYSIssgsqgifdidpntgniftlkeldresatsnngAYILEIKVteesktvqpaptakteVTIIITDvteesktvqpaptakteVTIIITdvndetptfrspryvaeihensvintpvtflggvvpqvfdydqgkngtfqmfiegdmgtfeitpQKIINEASFLIRNM
Flexible Loop (DISEMBL)
minllnagvnrvKEKHVLLIGTYLLLSAILVDSsvsgnraprfiiDEQTEIVIrlkegpdtpaGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILavdrsnndrrNTGTAAILvkvqdvedqpPEFVAVSsvtrvsedvpvgtsvlqvkavdgdrgiNNKILYSissgsqgifdiDPNTGNIFTLKELDRESATSNNGAYILEIkvteesktvqpaptaktevtIIITdvteesktvqpaptaktevtiiitdvndetptFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIRNM
Low Complexity Region (SEG)
MINLLNAGVNRVKEKHVLLIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKtevtiiitdvteeSKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIRNM
Disordered region (IsUnstruct)
***LLNAGVNRVKEKHVLLIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELD******NNGAYILEIKVT************KTEVTIIITDVT***********AKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLI***
Disordered Region (DISOPRED)
MINLLNAGVNRVKEKHVLLIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIRNM
Disordered Region (DISEMBL)
MINLLNAGVNRVKEKHVLLIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEE*********AKTEVTIIITDVTE**********AKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIRNM
Disordered Region (DISPRO)
MINLLNAGVNRVKEKHVLLIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIIT********VQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIRNM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINLLNAGVNRVKEKHVLLIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIRNM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	383	2.2.26 [Sep-21-2011]
Q9VGW1	1943	Cadherin-86C OS=Drosophil	no	N/A	0.629	0.124	0.320	2e-30
Q8WN91	867	Cadherin-related family m	yes	N/A	0.785	0.347	0.298	7e-25
Q9V5N8	3579	Protocadherin-like wing p	no	N/A	0.647	0.069	0.280	9e-25
Q8VHP6	859	Cadherin-related family m	yes	N/A	0.785	0.350	0.293	1e-24
Q96JP9	859	Cadherin-related family m	no	N/A	0.791	0.352	0.290	2e-24
Q6B457	867	Cadherin-related family m	N/A	N/A	0.785	0.347	0.287	5e-23
Q91XU7	859	Cadherin-related family m	yes	N/A	0.785	0.350	0.280	9e-22
Q9NYQ7	3312	Cadherin EGF LAG seven-pa	no	N/A	0.511	0.059	0.307	1e-20
O88278	3313	Cadherin EGF LAG seven-pa	no	N/A	0.511	0.059	0.311	3e-20
Q91ZI0	3301	Cadherin EGF LAG seven-pa	no	N/A	0.511	0.059	0.311	3e-20

>sp|Q9VGW1|CAD86_DROME Cadherin-86C OS=Drosophila melanogaster GN=Cad86C PE=2 SV=3

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 134/268 (50%), Gaps = 27/268 (10%)

Query: 120 ISTVNGKGVIKLIGKLDYENKFLYQLKILAVD---RSNNDRRNTGTAAILVKVQDVEDQP 176
           +S+   +G + L+G LD+E + +Y L ILA D       D RN     I+V VQDV+DQP
Sbjct: 304 VSSETTEGTVFLLGPLDFEKQAMYHLTILANDAYAEPGQDSRNIAGMEIVVIVQDVQDQP 363

Query: 177 PEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQ---GIFDIDPNTG 233
           P F +   VT++   +  G  +LQV A DGD+G   ++ Y + S +      FDI+  +G
Sbjct: 364 PVFTSAPPVTKLPPGILPGDKILQVHAEDGDKGNPREVRYGLVSENNPFTSFFDINETSG 423

Query: 234 NIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPA 293
            IF ++ L+  +  ++ G  +L   + EE K  +  P                     PA
Sbjct: 424 EIFLMRPLEDIAFITHVGDPVLLTVIAEEVKVGRDEP---------------------PA 462

Query: 294 PTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGT 353
             +  ++   + D  +  P F +  YV+ + EN+   T +TF+   VP+V+D D GKNG 
Sbjct: 463 LASTVQLAFFLPDRTNSPPYFENDHYVSRVDENAPQGTALTFVDPYVPRVYDDDTGKNGV 522

Query: 354 FQMFIEGDMGTFEITPQKIINEASFLIR 381
           F + +  + GTFEI+P      A FLIR
Sbjct: 523 FSLTLLNNNGTFEISPNVAERSAGFLIR 550

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells.
Drosophila melanogaster (taxid: 7227)

>sp|Q8WN91|CDHR1_BOVIN Cadherin-related family member 1 OS=Bos taurus GN=CDHR1 PE=2 SV=1

 Score =  115 bits (287), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 163/382 (42%), Gaps = 81/382 (21%)

Query: 8   GVNRVKEKHVLLIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFI 67
           G+N V EK  +L+             + + + APRFI   Q   V+++ E  DTP+G+ I
Sbjct: 113 GLNLVAEKVTILV-------------TDANDEAPRFI---QEPYVVQVPE--DTPSGSSI 154

Query: 68  YRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKG 127
            R+R  D D      G  G                V Y L+N    E   FS+   +G  
Sbjct: 155 ARVRAVDRDT-----GSAG---------------SVTYFLKNPHPTE---FSVDRHSGVL 191

Query: 128 VIKLIGKLDYENKFLYQLKILAVDRSNNDRRN----TGTAAILVKVQDVEDQPPEFVAVS 183
            ++    LD+E    + + ++A D     R      + T  + V V+DV+D  P FV   
Sbjct: 192 RLRAGAILDFEKARAHFVTVVAKDGGGKLRGADVVLSATTVVTVNVEDVQDMGPVFVGTP 251

Query: 184 SVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLK---E 240
               V ED   G+ VL V A+DGDRG  N++LYS+ +GS G F+I+  +G I  ++   +
Sbjct: 252 YYGYVYEDTLPGSEVLMVVAMDGDRGKPNRVLYSLVNGSDGAFEINETSGAISVMQSPSQ 311

Query: 241 LDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEV 300
           L RE        Y L ++VTE S    P                        A  A   V
Sbjct: 312 LRRE-------VYELHVQVTEVSSAGTP------------------------AAQAMVPV 340

Query: 301 TIIITDVNDETPTFRSPRYVAEIHENSVINTPVT--FLGGVVPQVFDYDQGKNGTFQMFI 358
           TI I D+N+  PTF          E S+   P     L G+   V D DQG N  F + +
Sbjct: 341 TIRIVDLNNHPPTFYGESGPQNRFELSMYEHPPQGEILRGLKITVNDSDQGANAKFNLRL 400

Query: 359 EGDMGTFEITPQKIINEASFLI 380
            G  G F + PQ ++NEA   I
Sbjct: 401 VGPGGIFRVVPQTVLNEAQVTI 422

Potential calcium-dependent cell-adhesion protein. May be required for the structural integrity of the outer segment (OS) of photoreceptor cells.

Bos taurus (taxid: 9913)

>sp|Q9V5N8|STAN_DROME Protocadherin-like wing polarity protein stan OS=Drosophila melanogaster GN=stan PE=1 SV=4

 Score =  114 bits (286), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 90/321 (28%), Positives = 134/321 (41%), Gaps = 73/321 (22%)

Query: 58   GPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDL 117
            G D P GT +  +   DPD D                           H E   G+ +  
Sbjct: 804  GEDQPPGTPVTTVTATDPDEDSR------------------------LHYEITTGNTRGR 839

Query: 118  FSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPP 177
            F+I++ NG+G+I +   LDY+ +  + L + A D        + TA + + + D  +  P
Sbjct: 840  FAITSQNGRGLITIAQSLDYKQEKRFLLTVAATDSGGR----SDTATVHINITDANNFAP 895

Query: 178  EFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISS------GSQGIFDIDPN 231
             F        V ED PVGT+VL V A D D G+N +I YS++       GS   F I+P 
Sbjct: 896  IFENAPYSASVFEDAPVGTTVLVVSATDSDVGVNAQITYSLNEESINGLGSPDPFSINPQ 955

Query: 232  TGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQ 291
            TG I T   LDRE+ +     Y+L +   +                              
Sbjct: 956  TGAIVTNAPLDRETTS----GYLLTVTAKDGG---------------------------N 984

Query: 292  PAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKN 351
            P+ +  T+V I +TDVND  P F+SP Y A I E++++ T V  +    P     D G N
Sbjct: 985  PSLSDTTDVEIGVTDVNDNAPAFKSPLYQASILEDALVGTSVIQVAASDP-----DVGLN 1039

Query: 352  GTFQMFIEG---DMGTFEITP 369
            G  +  +     + G+F I P
Sbjct: 1040 GRIKYLLSDRDIEDGSFVIDP 1060

Involved in the fz signaling pathway that controls wing tissue polarity. Also mediates homophilic cell adhesion. May play a role in initiating prehair morphogenesis. May play a critical role in tissue polarity and in formation of normal dendrite fields.

Drosophila melanogaster (taxid: 7227)

>sp|Q8VHP6|CDHR1_MOUSE Cadherin-related family member 1 OS=Mus musculus GN=Cdhr1 PE=1 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 162/382 (42%), Gaps = 81/382 (21%)

Query: 8   GVNRVKEKHVLLIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFI 67
           G+N V EK V+L+             + + + APRFI   Q   +IR+ E  + PAG+ I
Sbjct: 113 GLNLVAEKVVILV-------------TDANDEAPRFI---QEPYIIRVPE--NIPAGSSI 154

Query: 68  YRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKG 127
           ++++  D D         G G              V Y L+N+   +   FS+   +G  
Sbjct: 155 FKVQAEDKD--------TGSGG------------SVTYSLQNLHSSK---FSMDRHSGVL 191

Query: 128 VIKLIGKLDYENKFLYQLKILAVDRSNN----DRRNTGTAAILVKVQDVEDQPPEFVAVS 183
            ++    LDYE    + + ++A D        D   + T  + + V+DV+D  P FV   
Sbjct: 192 RLQAGATLDYEKSRAHYITVIAKDGGGRLRGADMVFSATTTVTINVEDVQDTAPIFVGTP 251

Query: 184 SVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKE--- 240
               V ED   G+ VL V A+DGDRG  N ILY + + S GIF+I+  +G I  L+    
Sbjct: 252 YYGYVYEDTLPGSEVLTVVAIDGDRGKPNHILYRLLNESDGIFEINETSGAISVLQSPAL 311

Query: 241 LDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEV 300
           L RE        Y L ++VTE +    P                        A  A   V
Sbjct: 312 LRRE-------VYELHVQVTEVNSPGSP------------------------AAQATVPV 340

Query: 301 TIIITDVNDETPTFRSPRYVAEIHENSVINTPVT--FLGGVVPQVFDYDQGKNGTFQMFI 358
           TI I D+N+  PTF          E S+   P     L G+   V D DQG N  F + +
Sbjct: 341 TIRIVDLNNHPPTFYGESGPQNKFELSMFEHPPQGEILRGLKITVNDSDQGANAKFNLRL 400

Query: 359 EGDMGTFEITPQKIINEASFLI 380
            G  G F + PQ ++NEA   I
Sbjct: 401 VGPGGIFRVVPQTVLNEAQVTI 422

Potential calcium-dependent cell-adhesion protein. May be required for the structural integrity of the outer segment (OS) of photoreceptor cells.

Mus musculus (taxid: 10090)

>sp|Q96JP9|CDHR1_HUMAN Cadherin-related family member 1 OS=Homo sapiens GN=CDHR1 PE=1 SV=2

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 161/379 (42%), Gaps = 76/379 (20%)

Query: 8   GVNRVKEKHVLLIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFI 67
           G+N V EK V+L+             + + + APRFI +    +V       D PAG+ I
Sbjct: 113 GLNLVAEKVVILV-------------TDANDEAPRFIQEPYVALVPE-----DIPAGSII 154

Query: 68  YRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKG 127
           +++   D D         G G              V Y L+N+       F++   +G  
Sbjct: 155 FKVHAVDRD--------TGSGG------------SVTYFLQNLHSP----FAVDRHSGVL 190

Query: 128 VIKLIGKLDYENKFLYQLKILAVDRSNN----DRRNTGTAAILVKVQDVEDQPPEFVAVS 183
            ++    LDYE    + + ++A D        D   + T  + V V+DV+D  P FV   
Sbjct: 191 RLQAGATLDYERSRTHYITVVAKDGGGRLHGADVVFSATTTVTVNVEDVQDMAPVFVGTP 250

Query: 184 SVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDR 243
               V ED   G+ VL+V A+DGDRG  N+ILYS+ +G+ G F+I+  +G I     + +
Sbjct: 251 YYGYVYEDTLPGSEVLKVVAMDGDRGKPNRILYSLVNGNDGAFEINETSGAI----SITQ 306

Query: 244 ESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTII 303
             A      Y L ++VTE S    PA +                    PA  A   VTI 
Sbjct: 307 SPAQLQREVYELHVQVTEMS----PAGS--------------------PAAQATVPVTIR 342

Query: 304 ITDVNDETPTFRSPRYVAEIHENSVINTPVT--FLGGVVPQVFDYDQGKNGTFQMFIEGD 361
           I D+N+  PTF          E S+   P     L G+   V D DQG N  F + + G 
Sbjct: 343 IVDLNNHPPTFYGESGPQNRFELSMNEHPPQGEILRGLKITVNDSDQGANAKFNLQLVGP 402

Query: 362 MGTFEITPQKIINEASFLI 380
            G F + PQ ++NEA   I
Sbjct: 403 RGIFRVVPQTVLNEAQVTI 421

Potential calcium-dependent cell-adhesion protein. May be required for the structural integrity of the outer segment (OS) of photoreceptor cells.

Homo sapiens (taxid: 9606)

>sp|Q6B457|CDHR1_XENLA Cadherin-related family member 1 OS=Xenopus laevis GN=cdhr1 PE=2 SV=1

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 163/382 (42%), Gaps = 81/382 (21%)

Query: 8   GVNRVKEKHVLLIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFI 67
           G+N+V EK  +L+             + + + +P F+    T  ++ + E  DTP G+ I
Sbjct: 116 GINKVSEKVRVLV-------------TDANDESPGFL---NTPYIVTVPE--DTPPGSSI 157

Query: 68  YRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKG 127
           +++   D D         G G              + Y ++ + G +   F+I   +G  
Sbjct: 158 FKIEAVDKD--------TGSGG------------SITYIIQEMHGSK---FTIDRHSGVL 194

Query: 128 VIKLIGKLDYENKFLYQLKILAVDRSNNDRRN----TGTAAILVKVQDVEDQPPEFVAVS 183
            IK    LD+E    + + +LA D     R      T T  + + V+DV+D PP FV   
Sbjct: 195 RIKAGVSLDFEKSRTHFVSVLAKDGGGKLRGKNQVFTSTTTVTINVEDVQDSPPVFVGTP 254

Query: 184 SVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLK---E 240
               V ED  +G+ VL VKA DGDRG  N I YSI +GS G F I+  TG I  +K   E
Sbjct: 255 YYGYVYEDTTMGSEVLTVKAYDGDRGNPNTIYYSIVNGSDGAFTINNATGGITVIKTPDE 314

Query: 241 LDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEV 300
           L +E        Y L+I+V+E                     +T E   V  A T     
Sbjct: 315 LKKE-------VYELKIQVSE---------------------ITPEGDKVAHAFTV---A 343

Query: 301 TIIITDVNDETPTFRSPRYVAEIHENSVINTPVT--FLGGVVPQVFDYDQGKNGTFQMFI 358
           T+ + D+N+  PTF          E ++   P     L G+   V D DQG N  F + +
Sbjct: 344 TVRVVDLNNHPPTFYGENGPQNRFELTMYEHPPEGEILRGLKITVNDSDQGANAKFNLRL 403

Query: 359 EGDMGTFEITPQKIINEASFLI 380
            G  G F + PQ ++NEA   I
Sbjct: 404 VGPGGIFRVVPQTVLNEAQVTI 425

Potential calcium-dependent cell-adhesion protein.

Xenopus laevis (taxid: 8355)

>sp|Q91XU7|CDHR1_RAT Cadherin-related family member 1 OS=Rattus norvegicus GN=Cdhr1 PE=2 SV=1

 Score =  104 bits (260), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 166/382 (43%), Gaps = 81/382 (21%)

Query: 8   GVNRVKEKHVLLIGTYLLLSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFI 67
           G+N V EK V+++             + + + APRF+   Q    I + E  +TPAG+ I
Sbjct: 113 GLNLVAEKVVIVV-------------TDANDEAPRFL---QEPYNILVPE--NTPAGSSI 154

Query: 68  YRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKG 127
           ++++  D D         G G              V Y L+++   +   F++   +G  
Sbjct: 155 FKVQAEDKD--------TGSGG------------SVTYFLQSLHSSK---FTVDRHSGVL 191

Query: 128 VIKLIGKLDYENKFLYQLKILAVDRSNNDRRN----TGTAAILVKVQDVEDQPPEFVAVS 183
            ++    LDYE    + + ++A D     R      + T  + + V+DV+D  P FV   
Sbjct: 192 RLQAGATLDYEKSRAHFITVVAKDGGGRLRGADVVFSATTTVTINVEDVQDTAPIFVGTP 251

Query: 184 SVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLK---E 240
               V ED   G+ VL V A+DGDRG  N ILY + + S G+F+I+  +G I  L+   +
Sbjct: 252 YYGYVYEDTLPGSEVLTVVAIDGDRGKPNHILYRLLNESDGLFEINETSGAISVLQSPAQ 311

Query: 241 LDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEV 300
           L RE        Y L ++VTE + +  PA  A++ V +II                    
Sbjct: 312 LRRE-------VYELHVQVTEVNSSGSPA--AQSTVPVIIR------------------- 343

Query: 301 TIIITDVNDETPTFRSPRYVAEIHENSVINTPVT--FLGGVVPQVFDYDQGKNGTFQMFI 358
              I D+N+  PTF          E S+   P     L G+   V D DQG N  F + +
Sbjct: 344 ---IVDLNNHPPTFYGESGPQNKFELSMFEHPPQGEILRGLKITVNDSDQGANAKFNLRL 400

Query: 359 EGDMGTFEITPQKIINEASFLI 380
            G  G F + PQ ++NEA   I
Sbjct: 401 VGPGGIFRVVPQTVLNEAQVTI 422

Potential calcium-dependent cell-adhesion protein. May be required for the structural integrity of the outer segment (OS) of photoreceptor cells.

Rattus norvegicus (taxid: 10116)

>sp|Q9NYQ7|CELR3_HUMAN Cadherin EGF LAG seven-pass G-type receptor 3 OS=Homo sapiens GN=CELSR3 PE=1 SV=2

 Score =  101 bits (251), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 109/241 (45%), Gaps = 45/241 (18%)

Query: 127  GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
            G I L   LDYE++  Y L I A  R N   +   T  + V V DV D  P+FVA     
Sbjct: 911  GAITLQAPLDYEDQVTYTLAITA--RDNGIPQKADTTYVEVMVNDVNDNAPQFVASHYTG 968

Query: 187  RVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS--QGIFDIDPNTGNIFTLKELDRE 244
             VSED P  TSVLQ+ A D D   N ++ Y+  +G    G F I+P +G + T++ LDRE
Sbjct: 969  LVSEDAPPFTSVLQISATDRDAHANGRVQYTFQNGEDGDGDFTIEPTSGIVRTVRRLDRE 1028

Query: 245  SATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIII 304
            + +      + E+      + V   P  +T V+I                       +++
Sbjct: 1029 AVS------VYELTAYAVDRGV---PPLRTPVSI----------------------QVMV 1057

Query: 305  TDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV--FDYDQGKNG-TFQMFIEGD 361
             DVND  P F +  +   + ENS++       G VV Q+   D D+G N       +EG+
Sbjct: 1058 QDVNDNAPVFPAEEFEVRVKENSIV-------GSVVAQITAVDPDEGPNAHIMYQIVEGN 1110

Query: 362  M 362
            +
Sbjct: 1111 I 1111

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Homo sapiens (taxid: 9606)

>sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3 OS=Rattus norvegicus GN=Celsr3 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 107/241 (44%), Gaps = 45/241 (18%)

Query: 127  GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
            G I L   LDYE++  Y L I A  R N   +   T  + V V DV D  P+FVA     
Sbjct: 902  GAITLQAPLDYEDQVTYTLAITA--RDNGIPQKADTTYVEVMVNDVNDNAPQFVASHYTG 959

Query: 187  RVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS--QGIFDIDPNTGNIFTLKELDRE 244
             VSED P  TSVLQ+ A D D   N ++ Y+  +G    G F I+P +G + T++ LDRE
Sbjct: 960  LVSEDAPPFTSVLQISATDRDAHANGRVQYTFQNGEDGDGDFTIEPTSGIVRTVRRLDRE 1019

Query: 245  SATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIII 304
            +        + E+      + V   P  +T V+I +T                      +
Sbjct: 1020 AVP------VYELTAYAVDRGV---PPLRTPVSIQVT----------------------V 1048

Query: 305  TDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV--FDYDQGKNG-TFQMFIEGD 361
             DVND  P F +  +   + ENS++       G VV Q+   D D G N       +EG+
Sbjct: 1049 QDVNDNAPVFPAEEFEVRVKENSIV-------GSVVAQITAVDPDDGPNAHIMYQIVEGN 1101

Query: 362  M 362
            +
Sbjct: 1102 I 1102

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Rattus norvegicus (taxid: 10116)

>sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type receptor 3 OS=Mus musculus GN=Celsr3 PE=2 SV=2

 Score = 99.8 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 107/241 (44%), Gaps = 45/241 (18%)

Query: 127  GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
            G I L   LDYE++  Y L I A  R N   +   T  + V V DV D  P+FVA     
Sbjct: 902  GAITLQAPLDYEDQVTYTLAITA--RDNGIPQKADTTYVEVMVNDVNDNAPQFVASHYTG 959

Query: 187  RVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS--QGIFDIDPNTGNIFTLKELDRE 244
             VSED P  TSVLQ+ A D D   N ++ Y+  +G    G F I+P +G + T++ LDRE
Sbjct: 960  LVSEDAPPFTSVLQISATDRDAHANGRVQYTFQNGEDGDGDFTIEPTSGIVRTVRRLDRE 1019

Query: 245  SATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIII 304
            +        + E+      + V   P  +T V+I +T                      +
Sbjct: 1020 AVP------VYELTAYAVDRGV---PPLRTPVSIQVT----------------------V 1048

Query: 305  TDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV--FDYDQGKNG-TFQMFIEGD 361
             DVND  P F +  +   + ENS++       G VV Q+   D D G N       +EG+
Sbjct: 1049 QDVNDNAPVFPAEEFEVRVKENSIV-------GSVVAQITAVDPDDGPNAHIMYQIVEGN 1101

Query: 362  M 362
            +
Sbjct: 1102 I 1102

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
357604939	1850	hypothetical protein KGM_22119 [Danaus p	0.665	0.137	0.603	6e-87
383864739	5302	PREDICTED: uncharacterized protein LOC10	0.678	0.049	0.566	5e-85
350419741	5607	PREDICTED: hypothetical protein LOC10074	0.678	0.046	0.562	7e-85
340713440	5599	PREDICTED: hypothetical protein LOC10064	0.678	0.046	0.562	8e-85
307184798	4786	Cadherin-23 [Camponotus floridanus]	0.678	0.054	0.566	4e-84
345487394	4820	PREDICTED: hypothetical protein LOC10011	0.663	0.052	0.553	3e-83
328722861	1850	PREDICTED: cadherin-23-like isoform 2 [A	0.668	0.138	0.570	1e-82
328722859	1878	PREDICTED: cadherin-23-like isoform 1 [A	0.668	0.136	0.570	1e-82
242012002	1910	conserved hypothetical protein [Pediculu	0.663	0.132	0.578	1e-82
307201345	1893	Cadherin-23 [Harpegnathos saltator]	0.663	0.134	0.571	8e-82

>gi|357604939|gb|EHJ64388.1| hypothetical protein KGM_22119 [Danaus plexippus]

 Score =  327 bits (838), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 169/280 (60%), Positives = 206/280 (73%), Gaps = 25/280 (8%)

Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
           +V+Y+L+ +DGD  D F+I TVNGKGVI+L  +LDYE K LYQL++LA+DR+N  R NTG
Sbjct: 159 QVLYNLQELDGD-VDNFAIQTVNGKGVIRLTNRLDYERKSLYQLRVLAIDRANQGRVNTG 217

Query: 162 TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG 221
           TAAILVKVQDVEDQPPEFV  S VTR+SED PVGTSVLQV+A+DGDRGINN+I YSI SG
Sbjct: 218 TAAILVKVQDVEDQPPEFVVASPVTRISEDAPVGTSVLQVRAIDGDRGINNRISYSIISG 277

Query: 222 SQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIIT 281
            +  FDID ++G ++T+  +DRE   ++NGAYILEI  TEES  V P P+A TEVT+   
Sbjct: 278 GEEHFDIDSSSGVVYTISPIDREDPNNSNGAYILEILATEESHMVSPLPSATTEVTV--- 334

Query: 282 DVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVP 341
                                IITDVNDE P F+S RYV EI EN+  NTP+TFL   VP
Sbjct: 335 ---------------------IITDVNDEKPKFKSNRYVGEIIENAQQNTPITFLQDGVP 373

Query: 342 QVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIR 381
           +VFDYDQGKNGTF++++ GD G F++TP K INEASFLIR
Sbjct: 374 EVFDYDQGKNGTFELYLVGDNGVFDVTPFKGINEASFLIR 413

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864739|ref|XP_003707835.1| PREDICTED: uncharacterized protein LOC100879829 [Megachile rotundata]

 Score =  320 bits (821), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 162/286 (56%), Positives = 210/286 (73%), Gaps = 26/286 (9%)

Query: 96  NLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNN 155
           +L    +VVY+L+ +DGD  D+FSI+TVNGKGVI+L+G LDYE K+LYQL+ILA+DR+ N
Sbjct: 185 DLGAHGQVVYYLQELDGD-NDVFSIATVNGKGVIRLVGHLDYERKYLYQLRILAIDRAIN 243

Query: 156 DRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKIL 215
           ++ NTGT AILVKVQDVEDQPPEF+ ++ V R+SE+V +GTSVLQV+AVDGD+GINNK+ 
Sbjct: 244 EKVNTGTTAILVKVQDVEDQPPEFITMTPVARISENVRIGTSVLQVRAVDGDKGINNKVT 303

Query: 216 YSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTE 275
           YSI+ G + +FDID  +G +FT  +LDRE+  + +G +ILEI V E SK V P P+  TE
Sbjct: 304 YSITQGPKYLFDIDATSGLVFTRAQLDREAEENADGTFILEITVKEVSKIV-PPPSVSTE 362

Query: 276 VTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTF 335
           VTI                        I+TDVNDETP FRS RY AEI+EN+  NTPV F
Sbjct: 363 VTI------------------------ILTDVNDETPKFRSTRYRAEINENAPHNTPVNF 398

Query: 336 LGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIR 381
           +G  +P+V+D+D G NGTF+M+IEGD G F++TP + INEA FLIR
Sbjct: 399 IGDAIPEVYDHDLGTNGTFRMYIEGDEGIFDVTPSRGINEAPFLIR 444

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419741|ref|XP_003492286.1| PREDICTED: hypothetical protein LOC100748423 [Bombus impatiens]

 Score =  320 bits (820), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 161/286 (56%), Positives = 209/286 (73%), Gaps = 26/286 (9%)

Query: 96  NLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNN 155
           +L    +VVY+L+ +DGD  D+FS+STVNGKGVI+L+G+LDYE K+LYQL+ILA+DR+ N
Sbjct: 185 DLGAHGQVVYYLQELDGD-NDVFSVSTVNGKGVIRLVGRLDYEKKYLYQLRILAIDRAIN 243

Query: 156 DRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKIL 215
           ++ NTGT AILVKVQDVEDQPPEF+ ++ V R+SE+  +GTSVLQV+AVDGD+GINNK+ 
Sbjct: 244 EKVNTGTTAILVKVQDVEDQPPEFITITPVARISENARIGTSVLQVRAVDGDKGINNKVT 303

Query: 216 YSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTE 275
           YSI+ G + +FDID  +G +FT  +LDRE+  +  G +ILEI V E S  V PAP+  TE
Sbjct: 304 YSITQGPRYLFDIDTTSGLVFTRAQLDREAEENAEGTFILEITVREVSNIV-PAPSVSTE 362

Query: 276 VTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTF 335
           VTI                        I+TDVNDETP FRS RY AEI+EN+  NTPV F
Sbjct: 363 VTI------------------------ILTDVNDETPKFRSARYRAEINENAPHNTPVNF 398

Query: 336 LGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIR 381
           +G  +P+V+D+D G NGTF+MFI+GD G F++TP + INEA FLIR
Sbjct: 399 IGDAIPEVYDHDLGTNGTFKMFIDGDDGIFDVTPSRGINEAPFLIR 444

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713440|ref|XP_003395251.1| PREDICTED: hypothetical protein LOC100642922 [Bombus terrestris]

 Score =  320 bits (819), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 161/286 (56%), Positives = 209/286 (73%), Gaps = 26/286 (9%)

Query: 96  NLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNN 155
           +L    +VVY+L+ +DGD  D+FS+STVNGKGVI+L+G+LDYE K+LYQL+ILA+DR+ N
Sbjct: 185 DLGAHGQVVYYLQELDGD-NDVFSVSTVNGKGVIRLVGRLDYEKKYLYQLRILAIDRAIN 243

Query: 156 DRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKIL 215
           ++ NTGT AILVKVQDVEDQPPEF+ ++ V R+SE+  +GTSVLQV+AVDGD+GINNK+ 
Sbjct: 244 EKVNTGTTAILVKVQDVEDQPPEFITITPVARISENARIGTSVLQVRAVDGDKGINNKVT 303

Query: 216 YSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTE 275
           YSI+ G + +FDID  +G +FT  +LDRE+  +  G +ILEI V E S  V PAP+  TE
Sbjct: 304 YSITQGPRYLFDIDTTSGLVFTRAQLDREAEENAEGTFILEITVREVSNIV-PAPSVSTE 362

Query: 276 VTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTF 335
           VTI                        I+TDVNDETP FRS RY AEI+EN+  NTPV F
Sbjct: 363 VTI------------------------ILTDVNDETPKFRSARYRAEINENAPHNTPVNF 398

Query: 336 LGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIR 381
           +G  +P+V+D+D G NGTF+MFI+GD G F++TP + INEA FLIR
Sbjct: 399 IGDAIPEVYDHDLGTNGTFKMFIDGDDGIFDVTPSRGINEAPFLIR 444

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184798|gb|EFN71112.1| Cadherin-23 [Camponotus floridanus]

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 162/286 (56%), Positives = 212/286 (74%), Gaps = 26/286 (9%)

Query: 96  NLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNN 155
           +L    +VVY+L+ +DGD  ++FSIST+NGKGVI+L+G LDYE K+LYQL+ILA+DR+ N
Sbjct: 184 DLGAHGQVVYYLQELDGD-NNVFSISTINGKGVIRLVGSLDYERKYLYQLRILAIDRAIN 242

Query: 156 DRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKIL 215
           ++ NTGT AIL+KVQDVEDQPPEF+A++ V R+SE+V +GTSVLQV+AVDGD+GINNK+ 
Sbjct: 243 EKVNTGTTAILIKVQDVEDQPPEFIAMTPVARISENVKIGTSVLQVRAVDGDKGINNKVT 302

Query: 216 YSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTE 275
           YSI+ G + +F+ID  +G +FT  +LDRE+  +++G +ILEI V E SK + P P+  TE
Sbjct: 303 YSITKGPRYLFEIDAASGLVFTRAQLDREAEENSDGTFILEITVKEMSK-INPPPSVSTE 361

Query: 276 VTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTF 335
           VTI                        I+TDVNDETPTFRS  Y AEI+EN+  NTPV F
Sbjct: 362 VTI------------------------ILTDVNDETPTFRSMVYHAEINENAPQNTPVNF 397

Query: 336 LGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIR 381
           +G  VP+VFD+D G NGTF++FIEGD G F+ITP + INEA FLIR
Sbjct: 398 IGDAVPEVFDHDLGSNGTFRIFIEGDGGIFDITPFRGINEAPFLIR 443

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487394|ref|XP_003425687.1| PREDICTED: hypothetical protein LOC100114931 [Nasonia vitripennis]

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 155/280 (55%), Positives = 208/280 (74%), Gaps = 26/280 (9%)

Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
           +VVY+L+  +G E D+FSI+TVNGKGVI+L G+LDYE K+LYQL+ILAVDR+ N++ NTG
Sbjct: 189 QVVYYLQETEG-ENDVFSITTVNGKGVIRLAGQLDYERKYLYQLRILAVDRAINEKVNTG 247

Query: 162 TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG 221
           + AILVKVQDVEDQPPEF++++ V+R+SE+  VGTSVLQV+A+DGD+GINN++ Y I+ G
Sbjct: 248 STAILVKVQDVEDQPPEFISMTPVSRISENSKVGTSVLQVRAIDGDKGINNRVTYDITRG 307

Query: 222 SQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIIT 281
            + +FDID  +G +FT   LDRE+  +++G++ILEI V EES  V P P+  TEVT    
Sbjct: 308 PRHLFDIDATSGTVFTTAPLDREAPDNSDGSFILEITVKEESSVV-PTPSVSTEVT---- 362

Query: 282 DVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVP 341
                               II+ DVNDETPTFRS +Y+AEI+EN+  NTPV F+G  +P
Sbjct: 363 --------------------IILMDVNDETPTFRSSKYIAEINENAPHNTPVNFIGDAIP 402

Query: 342 QVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIR 381
           +VFD+D G NGTF++ I+GD G FE++P + INEA FLIR
Sbjct: 403 EVFDHDLGSNGTFKLVIQGDQGIFEVSPTQGINEAPFLIR 442

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328722861|ref|XP_003247692.1| PREDICTED: cadherin-23-like isoform 2 [Acyrthosiphon pisum]

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 161/282 (57%), Positives = 206/282 (73%), Gaps = 26/282 (9%)

Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
           +VVYHL++ D  E +LFSIST+NG+GVI+L+G LDYE   L+QLKILAVDR+  ++R TG
Sbjct: 173 QVVYHLQDSDAIESNLFSISTLNGQGVIRLMGSLDYEKTSLHQLKILAVDRATVEKRKTG 232

Query: 162 TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG 221
           TAAI VKVQDVEDQPPEFV V+ V RVSED P GTS++QVKA+DGDRGI+N+I+YSI+ G
Sbjct: 233 TAAIFVKVQDVEDQPPEFVVVTPVARVSEDAPPGTSIIQVKAIDGDRGIDNRIVYSITRG 292

Query: 222 SQGIFDIDPNTGNIFTLKELDRESA-TSNNGAYILEIKVTEESKTVQPAPTAKTEVTIII 280
             G+  ++PN+G ++T   LDRE       GA I+EI  TE+SK V P P+ KTEVT+I 
Sbjct: 293 GNGMLQVEPNSGIVYTTNVLDREDPLIIKTGAIIIEIMATEDSKNVFPNPSTKTEVTVI- 351

Query: 281 TDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVV 340
                                  +TDVNDETPTFRS +Y+AE++EN+  NTPV F+G  +
Sbjct: 352 -----------------------VTDVNDETPTFRSTQYIAEVNENAQQNTPVNFIGDSI 388

Query: 341 PQVFDYDQGKNGTFQMFI-EGDMGTFEITPQKIINEASFLIR 381
           PQV+DYDQGKNGTF++ I +G +G F+ITP + INEASFLIR
Sbjct: 389 PQVYDYDQGKNGTFRLRIQQGRIGYFDITPSEGINEASFLIR 430

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328722859|ref|XP_001948150.2| PREDICTED: cadherin-23-like isoform 1 [Acyrthosiphon pisum]

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 161/282 (57%), Positives = 206/282 (73%), Gaps = 26/282 (9%)

Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
           +VVYHL++ D  E +LFSIST+NG+GVI+L+G LDYE   L+QLKILAVDR+  ++R TG
Sbjct: 173 QVVYHLQDSDAIESNLFSISTLNGQGVIRLMGSLDYEKTSLHQLKILAVDRATVEKRKTG 232

Query: 162 TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG 221
           TAAI VKVQDVEDQPPEFV V+ V RVSED P GTS++QVKA+DGDRGI+N+I+YSI+ G
Sbjct: 233 TAAIFVKVQDVEDQPPEFVVVTPVARVSEDAPPGTSIIQVKAIDGDRGIDNRIVYSITRG 292

Query: 222 SQGIFDIDPNTGNIFTLKELDRESA-TSNNGAYILEIKVTEESKTVQPAPTAKTEVTIII 280
             G+  ++PN+G ++T   LDRE       GA I+EI  TE+SK V P P+ KTEVT+I 
Sbjct: 293 GNGMLQVEPNSGIVYTTNVLDREDPLIIKTGAIIIEIMATEDSKNVFPNPSTKTEVTVI- 351

Query: 281 TDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVV 340
                                  +TDVNDETPTFRS +Y+AE++EN+  NTPV F+G  +
Sbjct: 352 -----------------------VTDVNDETPTFRSTQYIAEVNENAQQNTPVNFIGDSI 388

Query: 341 PQVFDYDQGKNGTFQMFI-EGDMGTFEITPQKIINEASFLIR 381
           PQV+DYDQGKNGTF++ I +G +G F+ITP + INEASFLIR
Sbjct: 389 PQVYDYDQGKNGTFRLRIQQGRIGYFDITPSEGINEASFLIR 430

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012002|ref|XP_002426732.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510903|gb|EEB13994.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/280 (57%), Positives = 205/280 (73%), Gaps = 26/280 (9%)

Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
           +VVY L+++DGD+   FSISTVNGKGVIKLI +LDYE K LYQL+ILA+DRSN +  NTG
Sbjct: 227 QVVYRLKDLDGDDS-TFSISTVNGKGVIKLIKELDYEQKILYQLQILAMDRSNTEPVNTG 285

Query: 162 TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG 221
           T+ +++KV+DVED+ PEFVAVS V R+SED  +GT V++VKA+DGDRGINN I+YSI+ G
Sbjct: 286 TSTVVIKVEDVEDRLPEFVAVSPVGRISEDAEIGTEVMRVKAIDGDRGINNSIVYSITKG 345

Query: 222 SQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIIT 281
           S+  F+ID   G ++T K+LDRES+ SNNGAYILEI   E SK + P P  KTEVTI   
Sbjct: 346 SEEDFEIDSTYGIVYTAKKLDRESS-SNNGAYILEITARENSKIIFPPPFTKTEVTI--- 401

Query: 282 DVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVP 341
                                I++DVNDETPTFR+  Y AEI EN+ +NTPVTF  G  P
Sbjct: 402 ---------------------IVSDVNDETPTFRNDSYKAEIDENAQMNTPVTFFDGFFP 440

Query: 342 QVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIR 381
           +++D+DQGKNGTF++F EGD G FE+TP  I+NE +FLIR
Sbjct: 441 EIYDHDQGKNGTFRVFTEGDFGIFEVTPSVIVNEGTFLIR 480

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201345|gb|EFN81180.1| Cadherin-23 [Harpegnathos saltator]

 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 160/280 (57%), Positives = 207/280 (73%), Gaps = 26/280 (9%)

Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
           +VVY+L+ +DGD  +LF+I+TVNGKGVI+L+G LDYE K+LYQL+ILAVD + +++ NTG
Sbjct: 191 QVVYYLQELDGD-NNLFNITTVNGKGVIRLVGSLDYERKYLYQLRILAVDHAISEKVNTG 249

Query: 162 TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG 221
           T AIL+ VQDVEDQPPEF+ ++ V R+SE+  +GTSVLQV+AVDGD+GINNK+ YSI+ G
Sbjct: 250 TTAILINVQDVEDQPPEFITMTPVARISENSRIGTSVLQVRAVDGDKGINNKVTYSITEG 309

Query: 222 SQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIIT 281
            + +FDID  +G +FT   LDRE+  +++GAYILEI V E SK V PAP+  TEVTI   
Sbjct: 310 PRYLFDIDATSGLVFTTAPLDREADENSDGAYILEITVKEVSKIV-PAPSVITEVTI--- 365

Query: 282 DVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVP 341
                                I+TDVNDETP FRS  Y AEI+EN+  NTPV+F+G  VP
Sbjct: 366 ---------------------ILTDVNDETPKFRSMLYRAEINENAPQNTPVSFIGDAVP 404

Query: 342 QVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFLIR 381
           ++FD+D G NGTFQ+FIEGD G F++TP + INEA FLIR
Sbjct: 405 EIFDHDLGTNGTFQIFIEGDGGMFDVTPSRGINEAPFLIR 444

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	383
FB|FBgn0038247	2002	Cad88C "Cadherin 88C" [Drosoph	0.436	0.083	0.581	1.9e-50
FB|FBgn0261053	1943	Cad86C "Cadherin 86C" [Drosoph	0.399	0.078	0.339	8.5e-30
ZFIN|ZDB-GENE-040513-7	3366	cdh23 "cadherin-like 23" [Dani	0.368	0.041	0.405	1.3e-27
MGI|MGI:2157782	859	Cdhr1 "cadherin-related family	0.425	0.189	0.321	1.5e-23
UNIPROTKB|F1NG38	3272	CDH23 "Uncharacterized protein	0.368	0.043	0.348	1.2e-22
FB|FBgn0036715	1820	Cad74A "Cadherin 74A" [Drosoph	0.569	0.119	0.334	1.3e-21
UNIPROTKB|G8JLI8	530	CDH23 "Cadherin-23" [Homo sapi	0.352	0.254	0.35	1.6e-21
UNIPROTKB|E1BF45	1279	CDHR2 "Uncharacterized protein	0.660	0.197	0.306	1.8e-21
UNIPROTKB|E2R353	4591	FAT1 "Uncharacterized protein"	0.402	0.033	0.395	6.8e-21
UNIPROTKB|G3XCN8	1064	CDH23 "Cadherin-23" [Homo sapi	0.352	0.126	0.35	2.7e-21

FB|FBgn0038247 Cad88C "Cadherin 88C" [Drosophila melanogaster (taxid:7227)]

 Score = 495 (179.3 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
 Identities = 100/172 (58%), Positives = 132/172 (76%)

Query:   102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
             +VVY+L+ +DGD  D+FSI+T  GKG+++L  +LDYE K LYQL++LA+DR+N    NTG
Sbjct:   205 QVVYYLQELDGDN-DVFSIATHQGKGILRLQKELDYERKSLYQLRVLAIDRANQGPINTG 263

Query:   162 TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG 221
             TAAILVKV+D+EDQPPEFV V +V R++ED PVGT VL+V+A+DGDRGINN I YS+ + 
Sbjct:   264 TAAILVKVKDLEDQPPEFVEVQAVARIAEDAPVGTKVLRVRAIDGDRGINNPIAYSLEAN 323

Query:   222 SQGIFDIDPNTGNIFTLKELDRESATSN-NGAYILEIKVTEESKT-VQPAPT 271
                +FDI+P+TG + TL +LDRE  +   NGA+IL I  TE SK+  Q APT
Sbjct:   324 D--LFDINPHTGIVHTLTKLDREEQSDQVNGAHILRISATELSKSNTQMAPT 373

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007424 "open tracheal system development" evidence=IGI

FB|FBgn0261053 Cad86C "Cadherin 86C" [Drosophila melanogaster (taxid:7227)]

 Score = 224 (83.9 bits), Expect = 8.5e-30, Sum P(3) = 8.5e-30
 Identities = 54/159 (33%), Positives = 85/159 (53%)

Query:   120 ISTVNGKGVIKLIGKLDYENKFLYQLKILAVD---RSNNDRRNTGTAAILVKVQDVEDQP 176
             +S+   +G + L+G LD+E + +Y L ILA D       D RN     I+V VQDV+DQP
Sbjct:   304 VSSETTEGTVFLLGPLDFEKQAMYHLTILANDAYAEPGQDSRNIAGMEIVVIVQDVQDQP 363

Query:   177 PEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQ---GIFDIDPNTG 233
             P F +   VT++   +  G  +LQV A DGD+G   ++ Y + S +      FDI+  +G
Sbjct:   364 PVFTSAPPVTKLPPGILPGDKILQVHAEDGDKGNPREVRYGLVSENNPFTSFFDINETSG 423

Query:   234 NIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTA 272
              IF ++ L+  +  ++ G  +L   + EE K  +  P A
Sbjct:   424 EIFLMRPLEDIAFITHVGDPVLLTVIAEEVKVGRDEPPA 462

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0035003 "subapical complex" evidence=IDA

GO:0008360 "regulation of cell shape" evidence=IMP

ZFIN|ZDB-GENE-040513-7 cdh23 "cadherin-like 23" [Danio rerio (taxid:7955)]

 Score = 239 (89.2 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
 Identities = 60/148 (40%), Positives = 86/148 (58%)

Query:   112 GDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD 171
             G++   FS+    G  V++ +  LD E +  Y+L I A+D      R TGTA + V+V D
Sbjct:  1041 GNQDGKFSVGFRTG--VVRTVVGLDRETQASYRLVIEAIDNGPAGGRRTGTATVYVEVLD 1098

Query:   172 VEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPN 231
             V D  P F+  S  T V E++P GTS+LQV+A D D+G N K+LY I SG+ G F +D  
Sbjct:  1099 VNDNRPIFLQNSYETSVLENIPRGTSILQVQATDADQGENGKVLYRILSGNNGQFSMDSL 1158

Query:   232 TGNIFTLK-ELDRESATSNNGAYILEIK 258
             +G I      LDRE+ +SN    +LE++
Sbjct:  1159 SGLISRGSVALDRETRSSN----VLEVE 1182

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0035315 "hair cell differentiation" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0005929 "cilium" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0050957 "equilibrioception" evidence=IMP

GO:0030030 "cell projection organization" evidence=IMP

GO:0060117 "auditory receptor cell development" evidence=IMP

GO:0035678 "neuromast hair cell morphogenesis" evidence=IMP

GO:0050974 "detection of mechanical stimulus involved in sensory perception" evidence=IMP

GO:0060122 "inner ear receptor stereocilium organization" evidence=IMP

GO:0042895 "antibiotic transporter activity" evidence=IMP

MGI|MGI:2157782 Cdhr1 "cadherin-related family member 1" [Mus musculus (taxid:10090)]

 Score = 194 (73.4 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
 Identities = 56/174 (32%), Positives = 83/174 (47%)

Query:   103 VVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNN----DRR 158
             V Y L+N+   +   FS+   +G   ++    LDYE    + + ++A D        D  
Sbjct:   170 VTYSLQNLHSSK---FSMDRHSGVLRLQAGATLDYEKSRAHYITVIAKDGGGRLRGADMV 226

Query:   159 NTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSI 218
              + T  + + V+DV+D  P FV       V ED   G+ VL V A+DGDRG  N ILY +
Sbjct:   227 FSATTTVTINVEDVQDTAPIFVGTPYYGYVYEDTLPGSEVLTVVAIDGDRGKPNHILYRL 286

Query:   219 SSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTA 272
              + S GIF+I+  +G I  L+      A      Y L ++VTE +    PA  A
Sbjct:   287 LNESDGIFEINETSGAISVLQS----PALLRREVYELHVQVTEVNSPGSPAAQA 336

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0009987 "cellular process" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042622 "photoreceptor outer segment membrane" evidence=IDA

GO:0045494 "photoreceptor cell maintenance" evidence=IMP

UNIPROTKB|F1NG38 CDH23 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 224 (83.9 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
 Identities = 52/149 (34%), Positives = 83/149 (55%)

Query:   112 GDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD 171
             G++   FS+   +G  V++ +  LD E    Y L + A+D      R TGTA + V V D
Sbjct:   987 GNQDGKFSVGFRDG--VVRTVVSLDRETVASYALILEAIDNGPTGNRRTGTATVYVTVLD 1044

Query:   172 VEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQ-GIFDIDP 230
             V D  P F+  S    V ED+P  +S++QVKA D D G+N ++ Y I  G++   F I+P
Sbjct:  1045 VNDNRPIFLQSSYEASVPEDIPAASSIVQVKATDADEGVNGRVWYRIVKGNEHNNFRINP 1104

Query:   231 NTGNIFT-LKELDRESATSNNGAYILEIK 258
             ++G +   ++ LDRE     N +++LE++
Sbjct:  1105 SSGLLMRGVRPLDREQ----NSSHVLEVE 1129

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0050957 "equilibrioception" evidence=IEA

GO:0051480 "cytosolic calcium ion homeostasis" evidence=IEA

FB|FBgn0036715 Cad74A "Cadherin 74A" [Drosophila melanogaster (taxid:7227)]

 Score = 244 (91.0 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
 Identities = 85/254 (33%), Positives = 115/254 (45%)

Query:    91 VIRIENLN--VMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKIL 148
             V R E +N  V +K +   +  D  E     IS  N    + L  +LD+E++  Y L I 
Sbjct:   156 VDRDEGINSEVQMKCLEENDICDIFEVRAVKISDGNYTARVALKQQLDFESRPSYILTIS 215

Query:   149 AVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDR 208
             A D S  D R +  A I + V D++DQPP F        V E+ P G S+L VKAVDGD 
Sbjct:   216 ASD-SALDNRLSSLATISINVIDIQDQPPIFTNAPYSATVPENTPAGVSILTVKAVDGDV 274

Query:   209 GINNKILYSISSGSQGIFDI----DPNTGNIF---TLKELDRESAT--SNNGAYILEIKV 259
             GI  +I  S+     G F++    DP  G      T + LDRE+A    N G Y+  I+ 
Sbjct:   275 GIPREIFLSLEDEPFGHFELVPFGDPRDGTAVLQTTSEPLDRENAEILQNGGVYVFSIRA 334

Query:   260 TEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITDVNDETPTFRSPRY 319
             TE    +  A                      PA  + T VTI++TDV+D  PTF  P +
Sbjct:   335 TE---LIDGAI---------------------PAEHSLTRVTIVVTDVDDHQPTFSGPHF 370

Query:   320 VAEIHENSVINTPV 333
                I EN     P+
Sbjct:   371 NVSITENLANGMPL 384

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS;IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0046843 "dorsal appendage formation" evidence=IDA

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005509 "calcium ion binding" evidence=IDA

GO:0044331 "cell-cell adhesion mediated by cadherin" evidence=IDA

UNIPROTKB|G8JLI8 CDH23 "Cadherin-23" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
 Identities = 49/140 (35%), Positives = 79/140 (56%)

Query:   124 NGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVS 183
             + +G++ +I +LDYE    YQL + A D+      +T  A + + + DV+D  P F+ + 
Sbjct:   182 SARGIVTVIRELDYETTQAYQLTVNATDQDKTRPLST-LANLAIIITDVQDMDPIFINLP 240

Query:   184 SVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKEL- 241
               T + E  P GT+V  + A+D D+G    I Y+I SG+   IF +D  +G + TL  L 
Sbjct:   241 YSTNIYEHSPPGTTVRIITAIDQDKGRPRGIGYTIVSGNTNSIFALDYISG-VLTLNGLL 299

Query:   242 DRESATSNNGAYILEIKVTE 261
             DRE+   ++G +IL +K TE
Sbjct:   300 DRENPLYSHG-FILTVKGTE 318

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BF45 CDHR2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
 Identities = 86/281 (30%), Positives = 128/281 (45%)

Query:   103 VVYHLENV----DGDEKDLFSISTVNGKGVIKLIGKLDYENKF-LYQLKILAVDRS---N 154
             VVY +E V    +G E  LF +   NG   I L G LDY +K   YQL++ A D     N
Sbjct:   160 VVYSIEKVIPATEGSEY-LFRVLP-NGS--IILNGSLDYNSKSSFYQLELRACDSGGLYN 215

Query:   155 NDRRNTGTAAILVKVQ--DVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN 212
             N      ++++ V +   D  D  P+FV       V+ED P GTSVL+V+A+DGDRGIN+
Sbjct:   216 NHTVIQCSSSVFVSISVIDKPDLDPQFVREFYSASVAEDTPQGTSVLKVEAMDGDRGIND 275

Query:   213 KILYSISSGSQ-GIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPT 271
              ++YSIS+ ++ G FDI    G I     LDRE     +    +++  TE    +     
Sbjct:   276 PVIYSISNSTRPGWFDIGKQDGVITVNSPLDREQLLEEDEEVQVQVTATETHPNIH-GQE 334

Query:   272 AKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINT 331
             AK                 +    +  +           TP      +   + E++    
Sbjct:   335 AKASIWVTLRVTDVNDHVPEFYNCSLQDCAF--------TPNETQVNFTGYVDEHASTRI 386

Query:   332 PVTFLGGVVPQVFDYDQGKNGTFQMFIEG-DMGTFEITPQK 371
             P+  L  VV   +D D+G NGTF + + G D   F ++PQ+
Sbjct:   387 PIEDLTMVV---YDPDKGSNGTFLLTLGGPDAEAFSVSPQR 424

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E2R353 FAT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 226 (84.6 bits), Expect = 6.8e-21, Sum P(3) = 6.8e-21
 Identities = 66/167 (39%), Positives = 91/167 (54%)

Query:    97 LNVMLKVVYHLEN-VDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNN 155
             L +  K+ Y L N  DG     FSI+ ++G  +I+L   LD E + +Y L + AVD+   
Sbjct:  3157 LGLNRKISYSLINSADGQ----FSINELSG--IIQLEKPLDRELQAVYTLTLKAVDQGL- 3209

Query:   156 DRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKIL 215
              RR T T  ++V V D+ D PP F        VSED+ +GT VLQV A   D   N +I 
Sbjct:  3210 PRRLTATGTLVVSVLDINDNPPVFEYREYGATVSEDILIGTEVLQVYAASRDIEANAEIT 3269

Query:   216 YSISSGSQ-GIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTE 261
             YSI SG++ G F ID  TG IF ++ LD ES+      Y L ++ T+
Sbjct:  3270 YSIISGNEHGKFSIDSKTGAIFIIETLDYESSHE----YYLTVEATD 3312

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|G3XCN8 CDH23 "Cadherin-23" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 2.7e-21, Sum P(3) = 2.7e-21
 Identities = 49/140 (35%), Positives = 79/140 (56%)

Query:   124 NGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVS 183
             + +G++ +I +LDYE    YQL + A D+      +T  A + + + DV+D  P F+ + 
Sbjct:   187 SARGIVTVIRELDYETTQAYQLTVNATDQDKTRPLST-LANLAIIITDVQDMDPIFINLP 245

Query:   184 SVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKEL- 241
               T + E  P GT+V  + A+D D+G    I Y+I SG+   IF +D  +G + TL  L 
Sbjct:   246 YSTNIYEHSPPGTTVRIITAIDQDKGRPRGIGYTIVSGNTNSIFALDYISG-VLTLNGLL 304

Query:   242 DRESATSNNGAYILEIKVTE 261
             DRE+   ++G +IL +K TE
Sbjct:   305 DRENPLYSHG-FILTVKGTE 323

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	383
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	8e-23
pfam00028	92	pfam00028, Cadherin, Cadherin domain	4e-17
smart00112	81	smart00112, CA, Cadherin repeats	2e-13
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	1e-10
smart00112	81	smart00112, CA, Cadherin repeats	2e-09
pfam00028	92	pfam00028, Cadherin, Cadherin domain	2e-04

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 91.2 bits (227), Expect = 8e-23
 Identities = 42/100 (42%), Positives = 54/100 (54%), Gaps = 8/100 (8%)

Query: 185 VTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDR 243
              V E+ P GT VL V A D D G N ++ YSI SG+  G+F IDP+TG I T K LDR
Sbjct: 3   EVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDR 62

Query: 244 ESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDV 283
           E  +S    Y L +  T+      P  ++   VTI + DV
Sbjct: 63  EEQSS----YTLTVTATDGG---GPPLSSTATVTITVLDV 95

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 75.4 bits (186), Expect = 4e-17
 Identities = 42/98 (42%), Positives = 52/98 (53%), Gaps = 8/98 (8%)

Query: 185 VTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-SQGIFDIDPNTGNIFTLKELDR 243
              V E+ PVGT VL V A D D G N +I YSI  G   G F IDP+TG++ T K LDR
Sbjct: 2   SASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDR 61

Query: 244 ESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIIT 281
           ES     G Y L +  T+      P  ++ T VTI + 
Sbjct: 62  ES----IGEYELTVLATDSG---GPPLSSTTTVTITVL 92

Length = 92

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 34/83 (40%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 202 KAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVT 260
            A D D G N K+ YSI SG+  G+F IDP TG I T K LDRE        Y L ++ T
Sbjct: 1   SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREE----QPEYTLTVEAT 56

Query: 261 EESKTVQPAPTAKTEVTIIITDV 283
           +      P  ++   VTI + DV
Sbjct: 57  DGG---GPPLSSTATVTITVLDV 76

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 26/115 (22%)

Query: 60  DTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFS 119
           + P GT +  +   DPD                         +V Y +  V G+E  LFS
Sbjct: 9   NAPPGTVVLTVSATDPDSGENG--------------------EVTYSI--VSGNEDGLFS 46

Query: 120 ISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVED 174
           I    G   I     LD E +  Y L + A D        + TA + + V DV D
Sbjct: 47  IDPSTG--EITTAKPLDREEQSSYTLTVTATDGGGPPL--SSTATVTITVLDVND 97

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
           KV Y +  + G++  LFSI    G   I     LD E +  Y L + A D       +T 
Sbjct: 12  KVTYSI--LSGNDDGLFSIDPETG--EITTTKPLDREEQPEYTLTVEATDGGGPPLSSTA 67

Query: 162 TAAILVKVQDVEDQPP 177
           T  + + V DV D  P
Sbjct: 68  T--VTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 26/117 (22%)

Query: 51  IVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENV 110
               + E  + P GT +  +   D D                         ++ Y +  +
Sbjct: 1   YSASVPE--NAPVGTEVLTVTATDADLGPNG--------------------RIFYSI--L 36

Query: 111 DGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILV 167
            G     F I    G   +     LD E+   Y+L +LA D       +T T  I V
Sbjct: 37  GGGPGGWFRIDPDTG--DLSTTKPLDRESIGEYELTVLATDSGGPPLSSTTTVTITV 91

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	383
KOG4289|consensus	2531		100.0
KOG4289|consensus	2531		100.0
KOG1219|consensus	4289		100.0
KOG1219|consensus	4289		100.0
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	100.0
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.94
KOG1834|consensus	952		99.79
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.72
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.66
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.64
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.57
KOG1834|consensus	952		99.31
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	97.66
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	97.13
PF08758	90	Cadherin_pro: Cadherin prodomain like; InterPro: I	97.09
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	96.99
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	95.74
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	94.98
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	94.67
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	94.57
PF13750	158	Big_3_3: Bacterial Ig-like domain (group 3)	92.39
TIGR00845	928	caca sodium/calcium exchanger 1. This model is spe	86.88
TIGR03660	137	T1SS_rpt_143 T1SS-143 repeat domain. This model re	86.13
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	84.87

>KOG4289|consensus

Probab=100.00  E-value=1.6e-51  Score=420.52  Aligned_cols=308  Identities=28%  Similarity=0.399  Sum_probs=287.8

Q ss_pred             eeccccccceeeeeEEEEeeeee-------eeeEEEEEeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEc
Q psy11780          3 NLLNAGVNRVKEKHVLLIGTYLL-------LSAILVDSSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGAD   74 (383)
Q Consensus         3 ~~~~~~lD~E~~~~~~l~~~~~~-------~~~~~~i~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D   74 (383)
                      +.+++.||||++..+.|.|+|.|       .+++++|.|.|. ||.|+|.   |..|.-+++|  |.++|+.|++++|+|
T Consensus       221 irta~~lDREt~e~HvlrVtA~d~~~P~~SAtttv~V~V~D~nDhsPvFE---q~~Y~e~lRE--n~evGy~vLtvrAtD  295 (2531)
T KOG4289|consen  221 IRTAKSLDRETKETHVLRVTAQDHGDPRRSATTTVTVLVLDTNDHSPVFE---QDEYREELRE--NLEVGYEVLTVRATD  295 (2531)
T ss_pred             chhhhhhhhhhhheeEEEEEeeecCCCcccceeEEEEEEeecCCCCcccc---hhHHHHHHhh--ccccCceEEEEEecc
Confidence            45789999999999999999988       568888888777 9999999   9999999999  999999999999999


Q ss_pred             CCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCC
Q psy11780         75 PDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSN  154 (383)
Q Consensus        75 ~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~  154 (383)
                      .|.+                    +|+++.|++  ..|+..+.|.|++.+  |.|.++.+||||+...|+|.|.|+|+|.
T Consensus       296 ~Dsp--------------------~Nani~Yrl--~eg~~~~~f~in~rS--GvI~T~a~lDRE~~~~y~L~VeAsDqG~  351 (2531)
T KOG4289|consen  296 GDSP--------------------PNANIRYRL--LEGNAKNVFEINPRS--GVISTRAPLDREELESYQLDVEASDQGR  351 (2531)
T ss_pred             CCCC--------------------CCCceEEEe--cCCCccceeEEcCcc--ceeeccCccCHHhhhheEEEEEeccCCC
Confidence            9995                    488999999  667888999999998  9999999999999999999999999998


Q ss_pred             CCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-cccEEEeCCCc
Q psy11780        155 NDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTG  233 (383)
Q Consensus       155 ~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~-~~~F~Id~~tG  233 (383)
                      ++.+  .++.|.|+|+|+|||+|+|....|.++|.|+..+++.|++|+|+|.|.|.|+.+.|+|.+++ .+.|.||..||
T Consensus       352 ~pgp--~Ta~V~itV~D~NDNaPqFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~f~id~~tG  429 (2531)
T KOG4289|consen  352 PPGP--RTAMVEITVEDENDNAPQFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNGRGQFYIDSLTG  429 (2531)
T ss_pred             CCCC--ceEEEEEEEEecCCCCccccccceEEEecccCCCCceEEEEEecccCCCcCceEEEEeeccCccccEEEecccc
Confidence            7544  38999999999999999999999999999999999999999999999999999999999877 78999999999


Q ss_pred             eEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCc
Q psy11780        234 NIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPT  313 (383)
Q Consensus       234 ~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~  313 (383)
                      +|.+..+||+|.. .    |++.|+|.|++.                           |+++.+.-+.|+|+|+|||+|.
T Consensus       430 el~vv~plD~e~~-~----ytl~IrAqDggr---------------------------PpLsn~sgl~iqVlDINDhaPi  477 (2531)
T KOG4289|consen  430 ELDVVEPLDFENS-E----YTLRIRAQDGGR---------------------------PPLSNTSGLVIQVLDINDHAPI  477 (2531)
T ss_pred             eEEEeccccccCC-e----eEEEEEcccCCC---------------------------CCccCCCceEEEEEecCCCCce
Confidence            9999999999998 4    999999999998                           8899999888999999999999


Q ss_pred             ccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCeEEEEEEeCCCccEEEecccEEEEEEEE
Q psy11780        314 FRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEASFL  379 (383)
Q Consensus       314 f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~i~y~l~~~~~~F~I~~~tG~~~~~~~  379 (383)
                      |...++.++|.|+.+.|..+..+.     |.|.|+|+|+.+.|++.|-. .|.|+..+|..+..-.
T Consensus       478 fvstpfq~tvlEnv~lg~~v~~vq-----aidadsg~na~l~y~laG~~-pf~I~~~SG~Itvtk~  537 (2531)
T KOG4289|consen  478 FVSTPFQATVLENVPLGYLVCHVQ-----AIDADSGENARLHYSLAGVG-PFQINNGSGWITVTKE  537 (2531)
T ss_pred             eEechhhhhhhhcccccceEEEEe-----cccCCCCcccceeeeeccCC-CeeEecCCceEEEeec
Confidence            999999999999999999999998     99999999999999997654 7999999999877654

>KOG4289|consensus

Probab=100.00  E-value=8.3e-50  Score=408.11  Aligned_cols=320  Identities=31%  Similarity=0.461  Sum_probs=291.3

Q ss_pred             eeeccccccceeeeeEEEEeeeee-------eeeEEEEEeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEE
Q psy11780          2 INLLNAGVNRVKEKHVLLIGTYLL-------LSAILVDSSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGA   73 (383)
Q Consensus         2 ~~~~~~~lD~E~~~~~~l~~~~~~-------~~~~~~i~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~   73 (383)
                      .+++.+.||||+.+.|.|.|.++|       ++++|.|.+.|+ ||.|.|.   +..|.++|.|  +.|.|+.|++++|+
T Consensus       531 ~Itvtk~ldrEt~~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP~Ft---~~eytl~inE--D~pvgsSI~tvtAv  605 (2531)
T KOG4289|consen  531 WITVTKELDRETVEHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDPTFT---QKEYTLRINE--DAPVGSSIVTVTAV  605 (2531)
T ss_pred             eEEEeecccccccceEEEEEEEcCCCCCcccccceEEEEecccCCCCCccc---cCceEEEecC--CccccceEEEEEEe
Confidence            367899999999999999999998       678888998888 9999999   9999999999  99999999999999


Q ss_pred             cCCCC-ceEEEEEcc-ccceEEEeecceeE--------------------------------------------------
Q psy11780         74 DPDGD-VLTFGVQGH-GHDVIRIENLNVML--------------------------------------------------  101 (383)
Q Consensus        74 D~D~~-~~~~~~~~~-~~~~~~i~~~~~~~--------------------------------------------------  101 (383)
                      |.|.. ..+|.|.|- ....|.|+..+-.|                                                  
T Consensus       606 D~d~~s~ityqi~g~ntrn~Fsi~si~g~Glitlalp~dkKqe~~~vl~vtAtDg~l~d~~~V~v~I~danThrpvFqs~  685 (2531)
T KOG4289|consen  606 DRDANSVITYQITGGNTRNRFSISSIGGGGLITLALPLDKKQERQYVLAVTATDGTLQDTCSVNVNITDANTHRPVFQSS  685 (2531)
T ss_pred             ccccccceEEEecCCcccccceeeccCCcceEEeecchhhcccceEEEEEEecCCccccceEEEEEeeecccCCcccccC
Confidence            99975 488999883 36777777766111                                                  


Q ss_pred             ------------------------------EEEEEEeeeCCCCCCcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEe
Q psy11780        102 ------------------------------KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVD  151 (383)
Q Consensus       102 ------------------------------~v~y~i~~~~~~~~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D  151 (383)
                                                    +|+|-+      ....|+||+++  |.+++...||||.+-.|.+.+.|+|
T Consensus       686 pfTvsI~e~rP~G~tvvtlsasd~D~geNARI~y~l------ed~~Frid~ds--g~i~t~~~ld~edqvtytl~itA~D  757 (2531)
T KOG4289|consen  686 PFTVSINEDRPLGTTVVTLSASDEDTGENARITYIL------EDEAFRIDPDS--GAIYTQAELDYEDQVTYTLAITARD  757 (2531)
T ss_pred             CeeEeeccCCcCCceeEEEecccCCCCccceEEEEe------cccceeecCCC--CceEEeeeeecccceeeEeeeeecC
Confidence                                          566633      13459999998  9999999999999999999999999


Q ss_pred             CCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC--cccEEEe
Q psy11780        152 RSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS--QGIFDID  229 (383)
Q Consensus       152 ~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~--~~~F~Id  229 (383)
                      .+.|  +..++.+|.|.|.|+|||+|+|..+.|.++|.|++|++|.+++|.|+|+|.++|+.+.|.+.++.  .+.|.|+
T Consensus       758 ~~~p--q~adtttveV~v~diNDnaPqf~assyt~sV~Ed~Pv~TsvlQVSatDaD~g~Ng~v~y~~qg~~d~p~~F~IE  835 (2531)
T KOG4289|consen  758 NGIP--QKADTTTVEVLVNDINDNAPQFLASSYTGSVFEDAPVFTSVLQVSATDADSGPNGRVYYTFQGGDDGPGDFYIE  835 (2531)
T ss_pred             CCCC--CcCccEEEEEEeecccccCcccchhhceeEeecCCCCcceEEEEEEeccCCCCCceEEEEecCCCCCCCceEEc
Confidence            9987  66889999999999999999999999999999999999999999999999999999999998754  7899999


Q ss_pred             CCCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCC
Q psy11780        230 PNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVND  309 (383)
Q Consensus       230 ~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvND  309 (383)
                      +.+|.|++.+.||||..+.    |.|.+.|.|.|.                           |+++++++|+|+|+|+||
T Consensus       836 ptSGviRtl~rLdRE~~av----y~L~a~avDrg~---------------------------p~ls~~~eItvtvldvND  884 (2531)
T KOG4289|consen  836 PTSGVIRTLRRLDRENVAV----YVLAAYAVDRGN---------------------------PPLSAPVEITVTVLDVND  884 (2531)
T ss_pred             cCcceeehhhhhcchheeE----EEEEEEEeeCCC---------------------------CCcCCceEEEEEEEecCC
Confidence            9999999999999999987    999999999999                           889999999999999999


Q ss_pred             CCCcccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCeEEEEEEeCC--CccEEEecccE
Q psy11780        310 ETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGD--MGTFEITPQKI  372 (383)
Q Consensus       310 n~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~i~y~l~~~--~~~F~I~~~tG  372 (383)
                      |||+|.+..|...|.||.+.|..++++.     |.|+|+|+|+++.|+|.++  ...|.++...|
T Consensus       885 naPvfe~~e~e~~I~enspvgs~va~i~-----a~dpdEG~NA~IsYqIvgg~d~~~fq~de~~~  944 (2531)
T KOG4289|consen  885 NAPVFEQDELELFIEENSPVGSVVALIT-----ADDPDEGPNAHISYQIVGGNDPELFQLDEFSG  944 (2531)
T ss_pred             CCCCCCCcceeeEEeecCccceeeEEEE-----ccCCCcCCcceEEEeeccCccHHHHHHHHhhh
Confidence            9999999999999999999999999999     9999999999999999654  46788887777

>KOG1219|consensus

Probab=100.00  E-value=2e-45  Score=386.33  Aligned_cols=304  Identities=29%  Similarity=0.424  Sum_probs=279.2

Q ss_pred             eccccccceeeeeEEEEeeeee-------eeeEEEEEeecC---CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEE
Q psy11780          4 LLNAGVNRVKEKHVLLIGTYLL-------LSAILVDSSVSG---NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGA   73 (383)
Q Consensus         4 ~~~~~lD~E~~~~~~l~~~~~~-------~~~~~~i~v~~~---Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~   73 (383)
                      -+-++||+|+.+.|+|.|++.|       +.+.+.+.++|.   =|||.|.   .-.-..+|.|  |+|+|+.++++.|.
T Consensus       904 fi~~~LDf~k~~fynLsv~a~d~g~p~lss~chl~Vevldv~enlhpp~F~---~~v~e~~V~E--napiGT~vi~i~A~  978 (4289)
T KOG1219|consen  904 FIGKPLDFEKSDFYNLSVTAVDRGTPILSSICHLEVEVLDVNENLHPPEFI---SFVTEGHVLE--NAPIGTIVIRIQAR  978 (4289)
T ss_pred             EEecccccccccceEEEEEEecCCCcceeeeEEEEEEEeccCCCCCCcchh---eeeeeeeEee--cCCcceEEEEEEEe
Confidence            3567999999999999999988       567777777777   4679997   5556789999  99999999999999


Q ss_pred             cCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCC
Q psy11780         74 DPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRS  153 (383)
Q Consensus        74 D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~  153 (383)
                      |.|.                    |.-|.+.|+|.  .|+..+.|.|++.+  |.|++.++||||..+.|.|+|.|+|.|
T Consensus       979 deds--------------------gldg~l~Y~I~--~gdg~g~FsId~~t--G~irTl~~lDrE~ks~YwltveA~D~g 1034 (4289)
T KOG1219|consen  979 DEDS--------------------GLDGELSYKIR--TGDGDGIFSIDSTT--GSIRTLKALDREKKSSYWLTVEAKDLG 1034 (4289)
T ss_pred             cCCC--------------------CccceEEEEEE--cCCcceeEEecCCc--ceEeechhhchhhcceEEEEEEEEecC
Confidence            9997                    34579999995  56778999999988  999999999999999999999999999


Q ss_pred             CCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-cccEEEeCCC
Q psy11780        154 NNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNT  232 (383)
Q Consensus       154 ~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~-~~~F~Id~~t  232 (383)
                      .+  ++++-+.+.|.|+|+|||+|.|.++.|..+|.|++|.+..|.++.|+|+|...|+++.|.|.+++ .++|.||+.|
T Consensus      1035 t~--~~ssv~~vyI~ieDvNDn~Pq~s~pvy~asI~enSp~~vsivq~ea~D~Dsssn~kLmykI~sGnyq~FF~Id~~T 1112 (4289)
T KOG1219|consen 1035 TV--PLSSVCEVYIEIEDVNDNVPQFSSPVYYASISENSPETVSIVQAEANDPDSSSNQKLMYKITSGNYQGFFQIDPET 1112 (4289)
T ss_pred             CC--ccccceeEEEEEEecCCCCcccCCceEeeeeccCCCCceEEEEeccCCCCcccCcceEEEEccCCccceEEEcccc
Confidence            87  56889999999999999999999999999999999999999999999999888999999999876 8999999999


Q ss_pred             ceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCC
Q psy11780        233 GNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETP  312 (383)
Q Consensus       233 G~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P  312 (383)
                      |.|++.+.||||++..    +.|.|+++|.|.                           |.+++...|.|.|+|+|||+|
T Consensus      1113 G~iTt~r~LDRE~qdE----HiLeVTi~D~ge---------------------------p~l~s~~rviV~IldvNdnsp 1161 (4289)
T KOG1219|consen 1113 GLITTIRRLDREKQDE----HILEVTIQDNGE---------------------------PWLCSNQRVIVSILDVNDNSP 1161 (4289)
T ss_pred             ceeeeehhhccccccc----ceEEEEEecCCC---------------------------CccccceEEEEEEeeccCCch
Confidence            9999999999999998    999999999998                           889999999999999999999


Q ss_pred             cccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCeEEEEEEeCCCccEEEecccEEEEE
Q psy11780        313 TFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEA  376 (383)
Q Consensus       313 ~f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~i~y~l~~~~~~F~I~~~tG~~~~  376 (383)
                      .|.+..|...|+|...+  .+.++.     |+|.|+|.|++++|.+..++..|+||..||+...
T Consensus      1162 ~Flqk~~~~~v~~r~s~--plyRl~-----a~d~DeG~narityniedgde~FsID~~t~vVss 1218 (4289)
T KOG1219|consen 1162 RFLQKKTFLRVPERSSP--PLYRLA-----AQDNDEGNNARITYNIEDGDEVFSIDIATGVVSS 1218 (4289)
T ss_pred             hhhhheeEEEeeeccCC--ceeEEE-----EEecCCCcceEEEEecccCceEEEEeccCceEEe
Confidence            99999999999998765  888988     9999999999999999877777999999997544

>KOG1219|consensus

Probab=100.00  E-value=8e-45  Score=381.79  Aligned_cols=304  Identities=31%  Similarity=0.446  Sum_probs=278.2

Q ss_pred             eeccccccceeeeeEEEEeeeee-------eeeEEEEEeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEc
Q psy11780          3 NLLNAGVNRVKEKHVLLIGTYLL-------LSAILVDSSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGAD   74 (383)
Q Consensus         3 ~~~~~~lD~E~~~~~~l~~~~~~-------~~~~~~i~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D   74 (383)
                      +++.++||+|.+.+|.|.++|.|       +-..+.+.+.|. ||+|+|.   +..|.++|.|  |+.+|+.|++|.|.|
T Consensus       697 itvas~ld~~~t~~yiLnvta~D~gtPqkss~r~l~v~vkd~ndn~p~f~---e~sy~vtvse--dtepgs~Ia~vetnd  771 (4289)
T KOG1219|consen  697 ITVASPLDNENTEQYILNVTAYDLGTPQKSSWRLLLVFVKDYNDNTPIFV---ERSYHVTVSE--DTEPGSFIAHVETND  771 (4289)
T ss_pred             EEEecchhhhhhheeEEEEEEecCCCchhhceeeEEEEEEecccCCcccc---ccceEEEEec--CCCCCceEEEEEecc
Confidence            57889999999999999999998       345666777665 9999999   8899999999  999999999999999


Q ss_pred             CCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCC
Q psy11780         75 PDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSN  154 (383)
Q Consensus        75 ~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~  154 (383)
                      .|+++                    ||.++|+|.    ++...|.|++.|  |.|.+.++||||.+..|.|.|+|+|++.
T Consensus       772 ~D~g~--------------------NG~v~fsL~----n~sdvfsIdp~t--Givv~~~sLdrE~q~~y~l~I~a~dqp~  825 (4289)
T KOG1219|consen  772 TDGGN--------------------NGMVSFSLL----NKSDVFSIDPFT--GIVVTSKSLDREGQTSYHLKIEARDQPP  825 (4289)
T ss_pred             cCCCC--------------------CceEEEEec----CCcceEEecCcc--cEEEeccccCcccCceeEEEEEEcCCCC
Confidence            99954                    899999993    468899999999  9999999999999999999999999987


Q ss_pred             CCCCCeeEEEEEEEEEEcCCCCCeEecCc---------------------------------------------------
Q psy11780        155 NDRRNTGTAAILVKVQDVEDQPPEFVAVS---------------------------------------------------  183 (383)
Q Consensus       155 ~~~~~~~~~~v~I~V~DvNDn~P~f~~~~---------------------------------------------------  183 (383)
                      |  ++.+.+.+.|.|+|+|||+|.|....                                                   
T Consensus       826 p--q~~svv~l~vsvedVndnpPkci~~hsr~kipedlp~gt~~~~l~A~d~diGq~~kvry~l~~~~v~~rvd~~sGav  903 (4289)
T KOG1219|consen  826 P--QLFSVVELDVSVEDVNDNPPKCIIRHSRSKIPEDLPYGTVTWQLVALDPDIGQLGKVRYYLTDDTVGERVDFPSGAV  903 (4289)
T ss_pred             C--ceEEEEEEEEEEeeccCCCCccccccccccCcccCCCceEEEEhhhcCcccCcCceeEEEEecCccccccccccccE
Confidence            5  67889999999999999999442111                                                   


Q ss_pred             ------------------------------------------------------cEEEEcCCCCCCcEEEEEEEEeCCCC
Q psy11780        184 ------------------------------------------------------SVTRVSEDVPVGTSVLQVKAVDGDRG  209 (383)
Q Consensus       184 ------------------------------------------------------~~~~v~E~~~~gt~v~~v~A~D~D~~  209 (383)
                                                                            -+.+|.||+|.|+.++++.|.|.|.|
T Consensus       904 fi~~~LDf~k~~fynLsv~a~d~g~p~lss~chl~Vevldv~enlhpp~F~~~v~e~~V~EnapiGT~vi~i~A~dedsg  983 (4289)
T KOG1219|consen  904 FIGKPLDFEKSDFYNLSVTAVDRGTPILSSICHLEVEVLDVNENLHPPEFISFVTEGHVLENAPIGTIVIRIQARDEDSG  983 (4289)
T ss_pred             EEecccccccccceEEEEEEecCCCcceeeeEEEEEEEeccCCCCCCcchheeeeeeeEeecCCcceEEEEEEEecCCCC
Confidence                                                                  12679999999999999999999999


Q ss_pred             CCceEEEEEecCC-cccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeeccccc
Q psy11780        210 INNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESK  288 (383)
Q Consensus       210 ~n~~i~y~i~~~~-~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (383)
                      ..+.+.|+|..+. .+.|.||+.+|.|++.++||||..+.    |-|+|.|.|.|.                        
T Consensus       984 ldg~l~Y~I~~gdg~g~FsId~~tG~irTl~~lDrE~ks~----YwltveA~D~gt------------------------ 1035 (4289)
T KOG1219|consen  984 LDGELSYKIRTGDGDGIFSIDSTTGSIRTLKALDREKKSS----YWLTVEAKDLGT------------------------ 1035 (4289)
T ss_pred             ccceEEEEEEcCCcceeEEecCCcceEeechhhchhhcce----EEEEEEEEecCC------------------------
Confidence            9999999998765 78999999999999999999999988    999999999998                        


Q ss_pred             ccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCeEEEEEEe--CCCccEE
Q psy11780        289 TVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIE--GDMGTFE  366 (383)
Q Consensus       289 ~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~i~y~l~--~~~~~F~  366 (383)
                         +++++.+.+.|.|+|+|||+|+|.++-|..+|.|+++.+..|.++.     |.|+|...|+++.|.|.  +..+.|.
T Consensus      1036 ---~~~ssv~~vyI~ieDvNDn~Pq~s~pvy~asI~enSp~~vsivq~e-----a~D~Dsssn~kLmykI~sGnyq~FF~ 1107 (4289)
T KOG1219|consen 1036 ---VPLSSVCEVYIEIEDVNDNVPQFSSPVYYASISENSPETVSIVQAE-----ANDPDSSSNQKLMYKITSGNYQGFFQ 1107 (4289)
T ss_pred             ---CccccceeEEEEEEecCCCCcccCCceEeeeeccCCCCceEEEEec-----cCCCCcccCcceEEEEccCCccceEE
Confidence               7899999999999999999999999999999999999999999998     99999999999999995  4589999


Q ss_pred             EecccEEEE
Q psy11780        367 ITPQKIINE  375 (383)
Q Consensus       367 I~~~tG~~~  375 (383)
                      |++.||..+
T Consensus      1108 Id~~TG~iT 1116 (4289)
T KOG1219|consen 1108 IDPETGLIT 1116 (4289)
T ss_pred             Eccccceee
Confidence            999999988

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=100.00  E-value=3.9e-31  Score=235.78  Aligned_cols=197  Identities=38%  Similarity=0.558  Sum_probs=178.2

Q ss_pred             EEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEEEE
Q psy11780         51 IVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIK  130 (383)
Q Consensus        51 ~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I~  130 (383)
                      |.+++.|  ++++|+.++++.|+|+|.+.                    ++.+.|+|..  +...++|.|++.+  |.|+
T Consensus         2 ~~~~i~E--n~~~g~~v~~~~a~D~D~~~--------------------~~~~~y~i~~--~~~~~~F~i~~~t--G~l~   55 (199)
T cd00031           2 YSVSVPE--NAPPGTVVGTVSATDPDSGE--------------------NGRVTYSILG--GNEDGLFSIDPNT--GVIT   55 (199)
T ss_pred             eEEEEeC--CCCCCCEEEEEEEECCCCCC--------------------CceEEEEEeC--CCCcccEEEeCCC--CEEE
Confidence            6788999  99999999999999999842                    5689999954  4434799999987  9999


Q ss_pred             EcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCC
Q psy11780        131 LIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGI  210 (383)
Q Consensus       131 ~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~  210 (383)
                      +.++||||....|.|.|+|+|.|.+  ..+++..++|.|.|+||++|.|....|.+.|.|+.++|+.++++.|+|+|.+.
T Consensus        56 ~~~~lD~e~~~~~~l~v~a~D~g~~--~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~  133 (199)
T cd00031          56 TTKPLDREEQSEYTLTVVASDGGGP--PLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADSGE  133 (199)
T ss_pred             ECCCCCCcCCceEEEEEEEEECCcC--cceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCCCC
Confidence            9999999999999999999998765  34689999999999999999999889999999999999999999999999988


Q ss_pred             CceEEEEEecCCc-ccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccc
Q psy11780        211 NNKILYSISSGSQ-GIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKT  289 (383)
Q Consensus       211 n~~i~y~i~~~~~-~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (383)
                      ++.++|+|.++.. .+|.|++.+|.|++.+.||+|....    |.|.|.|+|.+.                         
T Consensus       134 ~~~~~y~l~~~~~~~~f~i~~~~G~i~~~~~ld~e~~~~----~~l~v~a~D~~~-------------------------  184 (199)
T cd00031         134 NAKLTYSILSGNDKELFSIDPNTGIITLAKPLDREEKSS----YELTVVATDGGG-------------------------  184 (199)
T ss_pred             CccEEEEEeCCCCCCEEEEeCCceEEEeCCccCCccCce----EEEEEEEEECCC-------------------------
Confidence            9999999998764 8999999999999999999999876    999999999986                         


Q ss_pred             cCCCCceEEEEEEEEee
Q psy11780        290 VQPAPTAKTEVTIIITD  306 (383)
Q Consensus       290 ~~~~~s~~~~v~I~V~D  306 (383)
                        +.+++++.++|.|.|
T Consensus       185 --~~~~~~~~i~i~v~d  199 (199)
T cd00031         185 --PPLSSTATVTVTVLD  199 (199)
T ss_pred             --CCceeEEEEEEEEEC
Confidence              568888899998875

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.94  E-value=3.9e-25  Score=197.05  Aligned_cols=156  Identities=37%  Similarity=0.538  Sum_probs=144.3

Q ss_pred             ccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCc-ccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEe
Q psy11780        183 SSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQ-GIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTE  261 (383)
Q Consensus       183 ~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~~-~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D  261 (383)
                      .|.+.|+|+++.|+.++++.|.|+|.+.++.++|+|.++.. .+|.|++.+|.|++.+.||||....    |.|.|.|+|
T Consensus         1 ~~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~lD~e~~~~----~~l~v~a~D   76 (199)
T cd00031           1 SYSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKPLDREEQSE----YTLTVVASD   76 (199)
T ss_pred             CeEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCCCCCcCCce----EEEEEEEEE
Confidence            36789999999999999999999999888999999998764 7999999999999999999999977    999999999


Q ss_pred             CCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCCCCCCcceEEeecccc
Q psy11780        262 ESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVP  341 (383)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~~  341 (383)
                      .+.                           +.+++...++|.|.|+|||+|.|....|.+.|.|+.+.|+.++++.    
T Consensus        77 ~g~---------------------------~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~----  125 (199)
T cd00031          77 GGG---------------------------PPLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVT----  125 (199)
T ss_pred             CCc---------------------------CcceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEE----
Confidence            876                           5567899999999999999999998889999999999999999998    


Q ss_pred             eEEeCCCCCCeEEEEEEeCCC--ccEEEecccEEE
Q psy11780        342 QVFDYDQGKNGTFQMFIEGDM--GTFEITPQKIIN  374 (383)
Q Consensus       342 ~a~D~D~g~n~~i~y~l~~~~--~~F~I~~~tG~~  374 (383)
                       |+|+|.+.|+.++|+|.+..  ++|.|++.+|.-
T Consensus       126 -a~D~D~~~~~~~~y~l~~~~~~~~f~i~~~~G~i  159 (199)
T cd00031         126 -ATDADSGENAKLTYSILSGNDKELFSIDPNTGII  159 (199)
T ss_pred             -EEcCCCCCCccEEEEEeCCCCCCEEEEeCCceEE
Confidence             99999999999999998775  799999988854

>KOG1834|consensus

Probab=99.79  E-value=6e-18  Score=165.24  Aligned_cols=201  Identities=24%  Similarity=0.320  Sum_probs=157.3

Q ss_pred             EeecCCCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCC
Q psy11780         33 SSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDG  112 (383)
Q Consensus        33 ~v~~~Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~  112 (383)
                      .-..|-+.|..    ...|..-|.|++|+  -....-+.|-|.|. ||+|.-.                -.-|.|.+ .+
T Consensus        23 aarankhkpwi----e~ey~gvV~Endnt--vll~Ppl~aLdkda-plr~age----------------iC~fklhg-q~   78 (952)
T KOG1834|consen   23 AARANKHKPWI----EEEYHGVVTENDNT--VLLDPPLAALDKDA-PLRYAGE----------------ICGFKLHG-QP   78 (952)
T ss_pred             cccccccCccc----ccceeEEEEeCCce--EEeCCCeeeecCCC-Ccccccc----------------cceeEecC-CC
Confidence            33445677766    67899999994332  23344578888887 3443211                34567743 12


Q ss_pred             CCCCcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCCCC----CCCeeEEEEEEEEEEcCCCCCeEecCccEEEE
Q psy11780        113 DEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNND----RRNTGTAAILVKVQDVEDQPPEFVAVSSVTRV  188 (383)
Q Consensus       113 ~~~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~----~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v  188 (383)
                      -+-..-.+|..||+|.|+.+.+||+|.++.|+|+|+|.|.|..+    ...+..++|+|.|.|+|+.+|+|..+.|.+.|
T Consensus        79 vPFdavVvdK~TGegvlRaK~~lDCelqkeytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V  158 (952)
T KOG1834|consen   79 VPFDAVVVDKYTGEGVLRAKEPLDCELQKEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHV  158 (952)
T ss_pred             CCceEEEEeccCCceEEeecCcccccccccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEE
Confidence            22334456788999999999999999999999999999988632    13577899999999999999999999999999


Q ss_pred             cCCCCCCcEEEEEEEEeCCCC-CCceE-EEEEecCCcccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEeCCC
Q psy11780        189 SEDVPVGTSVLQVKAVDGDRG-INNKI-LYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESK  264 (383)
Q Consensus       189 ~E~~~~gt~v~~v~A~D~D~~-~n~~i-~y~i~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~  264 (383)
                      .|. +.-..|++|.|.|.|.+ ++++| .|.|.. .+-.|.||. .|.|+.+.+|.|.+...    |.|+|+|.|+|.
T Consensus       159 ~EG-K~yd~il~veAiD~DCspq~sqIC~YEI~t-~d~PFaIdn-~G~irnTekLny~ke~~----Y~ltVtAyDCg~  229 (952)
T KOG1834|consen  159 TEG-KVYDSILRVEAIDKDCSPQYSQICEYEITT-PDVPFAIDN-DGNIRNTEKLNYTKEHQ----YKLTVTAYDCGK  229 (952)
T ss_pred             ecc-eeeeeeEEEEeecCCCCCcccceeEEEecC-CCCceEEcC-CCcccccccccccccee----EEEEEEEEeccc
Confidence            998 56677999999999984 45555 688885 688999986 59999999999998876    999999999997

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.72  E-value=9.8e-17  Score=125.34  Aligned_cols=91  Identities=44%  Similarity=0.645  Sum_probs=85.6

Q ss_pred             cEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-cccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEeC
Q psy11780        184 SVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEE  262 (383)
Q Consensus       184 ~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~-~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~  262 (383)
                      |.++|+|++++|+.++++.|.|+|.+.|+.+.|+|.++. .++|.|++.+|.|++.++||||....    |.|.|.|+|.
T Consensus         1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~~~~F~I~~~tg~i~~~~~LD~E~~~~----y~l~v~a~D~   76 (93)
T PF00028_consen    1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNPDGLFSIDPNTGEISLKKPLDRETQSS----YQLTVRATDS   76 (93)
T ss_dssp             EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTSTTSEEEETTTTEEEESSSSCTTTTSE----EEEEEEEEET
T ss_pred             CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcccCceEEeeeeeccccceecCcccCCE----EEEEEEEEEC
Confidence            789999999999999999999999999999999999887 89999999999999999999999977    9999999999


Q ss_pred             -CCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEe
Q psy11780        263 -SKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIIT  305 (383)
Q Consensus       263 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~  305 (383)
                       +.                           |++++++.|+|+|+
T Consensus        77 ~~~---------------------------~~~~~~~~V~I~V~   93 (93)
T PF00028_consen   77 GGS---------------------------PPLSSTATVTINVL   93 (93)
T ss_dssp             TTS---------------------------SEEEEEEEEEEEEE
T ss_pred             CCC---------------------------CCCEEEEEEEEEEC
Confidence             65                           77899999999885

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.66  E-value=8e-16  Score=120.14  Aligned_cols=92  Identities=29%  Similarity=0.458  Sum_probs=82.0

Q ss_pred             EEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEEEE
Q psy11780         51 IVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIK  130 (383)
Q Consensus        51 ~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I~  130 (383)
                      |.++|+|  ++++|+.++++.|.|+|.+                    .|+.+.|+|.  .+++.++|.|++.+  |.|.
T Consensus         1 Y~~~v~E--~~~~g~~v~~v~a~D~D~~--------------------~n~~i~y~i~--~~~~~~~F~I~~~t--g~i~   54 (93)
T PF00028_consen    1 YSFSVPE--NAPPGTVVGQVTATDPDSG--------------------PNSQITYSIL--GGNPDGLFSIDPNT--GEIS   54 (93)
T ss_dssp             EEEEEET--TGSTSSEEEEEEEEESSTS--------------------TTSSEEEEEE--ETTSTTSEEEETTT--TEEE
T ss_pred             CEEEEEC--CCCCCCEEEEEEEEeCCCC--------------------CCceEEEEEe--cCcccCceEEeeee--eccc
Confidence            7899999  9999999999999999963                    4779999995  45668999999998  8999


Q ss_pred             EcccCCCCCCcEEEEEEEEEeC-CCCCCCCeeEEEEEEEEE
Q psy11780        131 LIGKLDYENKFLYQLKILAVDR-SNNDRRNTGTAAILVKVQ  170 (383)
Q Consensus       131 ~~~~LD~E~~~~~~l~V~a~D~-~~~~~~~~~~~~v~I~V~  170 (383)
                      +.++||||....|.|.|.|+|. +.|  .+++++.|+|+|+
T Consensus        55 ~~~~LD~E~~~~y~l~v~a~D~~~~~--~~~~~~~V~I~V~   93 (93)
T PF00028_consen   55 LKKPLDRETQSSYQLTVRATDSGGSP--PLSSTATVTINVL   93 (93)
T ss_dssp             ESSSSCTTTTSEEEEEEEEEETTTSS--EEEEEEEEEEEEE
T ss_pred             cceecCcccCCEEEEEEEEEECCCCC--CCEEEEEEEEEEC
Confidence            9999999999999999999999 555  5788899999885

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>smart00112 CA Cadherin repeats

Probab=99.64  E-value=1.5e-15  Score=114.84  Aligned_cols=78  Identities=45%  Similarity=0.757  Sum_probs=72.2

Q ss_pred             EeCCCCCCceEEEEEecCCc-ccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEee
Q psy11780        204 VDGDRGINNKILYSISSGSQ-GIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD  282 (383)
Q Consensus       204 ~D~D~~~n~~i~y~i~~~~~-~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~  282 (383)
                      +|+|.|.|+.++|+|.++.. .+|.|++.+|.|++.++||||....    |.|.|.|.|.+.                  
T Consensus         1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~~~----y~l~v~a~D~~~------------------   58 (79)
T smart00112        1 TDADSGENGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQPE----YTLTVEATDGGG------------------   58 (79)
T ss_pred             CCCCCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCCCe----EEEEEEEEECCC------------------
Confidence            48899889999999997764 8999999999999999999999876    999999999998                  


Q ss_pred             ecccccccCCCCceEEEEEEEEeecCCCCC
Q psy11780        283 VTEESKTVQPAPTAKTEVTIIITDVNDETP  312 (383)
Q Consensus       283 ~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P  312 (383)
                               +.+++.+.|+|+|.|+|||+|
T Consensus        59 ---------~~~~~~~~v~I~V~D~Nd~~P   79 (79)
T smart00112       59 ---------PPLSSTATVTVTVLDVNDNAP   79 (79)
T ss_pred             ---------CCcccEEEEEEEEEECCCCCC
Confidence                     778999999999999999998

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>smart00112 CA Cadherin repeats

Probab=99.57  E-value=2.2e-14  Score=108.45  Aligned_cols=74  Identities=35%  Similarity=0.447  Sum_probs=65.5

Q ss_pred             ceeEEEEEEEeeeCCCCCCcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCC
Q psy11780         98 NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPP  177 (383)
Q Consensus        98 ~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P  177 (383)
                      +.|+.+.|+|..  +....+|.|++.+  |.|++.++||||..+.|.|.|+|.|.+.+  .+++.+.|+|+|.|+|||+|
T Consensus         6 g~n~~i~Y~i~~--~~~~~~F~i~~~t--g~i~~~~~LD~e~~~~y~l~v~a~D~~~~--~~~~~~~v~I~V~D~Nd~~P   79 (79)
T smart00112        6 GENGKVTYSILS--GNEDGLFSIDPET--GEITTTKPLDREEQPEYTLTVEATDGGGP--PLSSTATVTVTVLDVNDNAP   79 (79)
T ss_pred             CcCcEEEEEEec--CCCCCEEEEeCCc--cEEEeCCccCeeCCCeEEEEEEEEECCCC--CcccEEEEEEEEEECCCCCC
Confidence            347799999953  4434899999998  89999999999999999999999999876  56889999999999999998

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>KOG1834|consensus

Probab=99.31  E-value=4.8e-11  Score=117.55  Aligned_cols=174  Identities=21%  Similarity=0.239  Sum_probs=130.3

Q ss_pred             EEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCC--Cc-eEEEEEecCCcccEE---EeCCCc--eEEEc
Q psy11780        167 VKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGI--NN-KILYSISSGSQGIFD---IDPNTG--NIFTL  238 (383)
Q Consensus       167 I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~--n~-~i~y~i~~~~~~~F~---Id~~tG--~i~~~  238 (383)
                      ...--+|-+.|... ..|..-|.||-..=...--+.|-|.|.+.  .+ .+-|.|.+. .-.|.   +|..||  .|+.+
T Consensus        21 ~~aarankhkpwie-~ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq-~vPFdavVvdK~TGegvlRaK   98 (952)
T KOG1834|consen   21 HHAARANKHKPWIE-EEYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQ-PVPFDAVVVDKYTGEGVLRAK   98 (952)
T ss_pred             cccccccccCcccc-cceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecCC-CCCceEEEEeccCCceEEeec
Confidence            34455677788765 56899999985332223357888888732  23 346888764 44454   466664  78888


Q ss_pred             ccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCc
Q psy11780        239 KELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPR  318 (383)
Q Consensus       239 ~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~  318 (383)
                      .+||.|.++.    |+|+|+|.|+|..  |                   .+....+|..++|.|+|.|+|+++|+|..+.
T Consensus        99 ~~lDCelqke----ytf~iQAydCg~g--p-------------------dgtn~kKShkatvhIrVkDvNe~AP~f~ep~  153 (952)
T KOG1834|consen   99 EPLDCELQKE----YTFTIQAYDCGNG--P-------------------DGTNTKKSHKATVHIRVKDVNEFAPVFKEPW  153 (952)
T ss_pred             Cccccccccc----ceEEEEEEecCCC--C-------------------CccccccccceEEEEEeccccccCchhcccc
Confidence            9999998887    9999999999961  0                   0011257888999999999999999999999


Q ss_pred             eEEEEeCCCCCCcceEEeecccceEEeCCCC-CCeE-EEEEEeCCCccEEEecccEE
Q psy11780        319 YVAEIHENSVINTPVTFLGGVVPQVFDYDQG-KNGT-FQMFIEGDMGTFEITPQKII  373 (383)
Q Consensus       319 y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g-~n~~-i~y~l~~~~~~F~I~~~tG~  373 (383)
                      |.+.|.|+... ..|+++.     |.|.|.+ .+++ +.|.|...+-.|.||.+.-+
T Consensus       154 Yka~V~EGK~y-d~il~ve-----AiD~DCspq~sqIC~YEI~t~d~PFaIdn~G~i  204 (952)
T KOG1834|consen  154 YKAHVTEGKVY-DSILRVE-----AIDKDCSPQYSQICEYEITTPDVPFAIDNDGNI  204 (952)
T ss_pred             eeeEEecceee-eeeEEEE-----eecCCCCCcccceeEEEecCCCCceEEcCCCcc
Confidence            99999998654 5677787     9999997 5666 69999988889999977544

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=97.66  E-value=4.8e-05  Score=57.68  Aligned_cols=74  Identities=24%  Similarity=0.387  Sum_probs=45.6

Q ss_pred             EEEEcCCCCCCcEEEEEEEEeCCCCCC--ceEEEEEecC-CcccEEEeCCCceEEEcccCCcccccCCCceEEEEEEE
Q psy11780        185 VTRVSEDVPVGTSVLQVKAVDGDRGIN--NKILYSISSG-SQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKV  259 (383)
Q Consensus       185 ~~~v~E~~~~gt~v~~v~A~D~D~~~n--~~i~y~i~~~-~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a  259 (383)
                      ..+|+|..++|+.|+.| |.|.-....  ....|++.+. ...+|.+++.+|.|++...+|||........+.|.+.+
T Consensus         4 ~YsV~EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~v~~rIDRE~LC~~~~~C~l~~ev   80 (84)
T PF08266_consen    4 RYSVPEEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLFVSERIDREELCGQSSPCFLSFEV   80 (84)
T ss_dssp             EEEEESS--TT-EEEEC-CCCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEEESS--SCCCC-TTSSS-EEEEEE
T ss_pred             EEEeecCCCCCCEEEEh-HHhhCCCcccccccceEEeecCCcceeEecCCceeEEeCCccCHHHHCCCCCCEEEEEEE
Confidence            46899999999999998 445433111  1235665543 48899999999999999999999986655556666654

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=97.13  E-value=0.004  Score=47.87  Aligned_cols=79  Identities=16%  Similarity=0.231  Sum_probs=43.6

Q ss_pred             CCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcE
Q psy11780         39 RAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLF  118 (383)
Q Consensus        39 n~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F  118 (383)
                      ..|=|.   +..|.+.++.  +...|..|++|+=.|-.+..                      ++.|.-.    +  ..|
T Consensus         2 C~pGF~---~~~~~~~Vp~--~l~~g~~lg~V~f~dC~~~~----------------------~~~~~ss----D--pdF   48 (90)
T PF08758_consen    2 CRPGFS---QKKYTFEVPS--NLEAGQPLGKVNFEDCTGRR----------------------RVIFESS----D--PDF   48 (90)
T ss_dssp             ---B-----S-EEEE------SS-SS--EEE---B--SS-------------------------EEEE---------SEE
T ss_pred             CcCCcc---cceEEEEcCc--hhhCCcEEEEEEeccCCCCC----------------------ceEEecC----C--CCE
Confidence            357788   8899999999  89999999999999887633                      5666552    2  399


Q ss_pred             EEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCC
Q psy11780        119 SISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSN  154 (383)
Q Consensus       119 ~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~  154 (383)
                      .|.++   |.|++++++..... .-+|.|.|.|..+
T Consensus        49 ~V~~D---GsVy~~r~v~l~~~-~~~F~V~a~D~~~   80 (90)
T PF08758_consen   49 RVLED---GSVYAKRPVQLSSE-QRSFTVHAWDSQT   80 (90)
T ss_dssp             EEETT---TEEEEES--S-SSS--EEEEEEEEETTT
T ss_pred             EEcCC---CeEEEeeeEecCCC-ceEEEEEEECCCC
Confidence            99998   99999999987544 3479999999976

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion

Probab=97.09  E-value=0.0065  Score=46.68  Aligned_cols=78  Identities=13%  Similarity=0.251  Sum_probs=44.1

Q ss_pred             CCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCcccEEEeCCCceEEEcccCCcccccCCCceEEE
Q psy11780        176 PPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYIL  255 (383)
Q Consensus       176 ~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l  255 (383)
                      .|-|.+..|.+.|+.+...|+.|++|.-.|-..  +..+.|...   +..|.|.+ .|.|++++++.....+     -+|
T Consensus         3 ~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~--~~~~~~~ss---DpdF~V~~-DGsVy~~r~v~l~~~~-----~~F   71 (90)
T PF08758_consen    3 RPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCTG--RRRVIFESS---DPDFRVLE-DGSVYAKRPVQLSSEQ-----RSF   71 (90)
T ss_dssp             --B--S-EEEE----SS-SS--EEE---B--SS-----EEEE------SEEEEET-TTEEEEES--S-SSS------EEE
T ss_pred             cCCcccceEEEEcCchhhCCcEEEEEEeccCCC--CCceEEecC---CCCEEEcC-CCeEEEeeeEecCCCc-----eEE
Confidence            588999999999999999999999999987743  467888764   34899976 5999999999886543     789


Q ss_pred             EEEEEeCCC
Q psy11780        256 EIKVTEESK  264 (383)
Q Consensus       256 ~V~a~D~~~  264 (383)
                      .|.|.|..+
T Consensus        72 ~V~a~D~~~   80 (90)
T PF08758_consen   72 TVHAWDSQT   80 (90)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEECCCC
Confidence            999999887

They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=96.99  E-value=0.0004  Score=52.69  Aligned_cols=65  Identities=20%  Similarity=0.304  Sum_probs=38.1

Q ss_pred             EEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEEEE
Q psy11780         51 IVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIK  130 (383)
Q Consensus        51 ~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I~  130 (383)
                      ..++|+|  +.++|+.|+.+. .|.-.+.     ..             .....|+|.  ......+|.++..+  |.|.
T Consensus         3 i~YsV~E--E~~~Gt~IGnia-~dL~l~~-----~~-------------l~~~~~ri~--s~~~~~~~~v~~~t--G~L~   57 (84)
T PF08266_consen    3 IRYSVPE--EMPPGTVIGNIA-KDLGLDP-----QS-------------LSSRNFRIV--SEGNSQYFRVNEKT--GDLF   57 (84)
T ss_dssp             EEEEEES--S--TT-EEEECC-CCCT--H-----HH-------------HCCTTBEEE---SSSS-SEEE-TTT--SEEE
T ss_pred             eEEEeec--CCCCCCEEEEhH-HhhCCCc-----cc-------------ccccceEEe--ecCCcceeEecCCc--eeEE
Confidence            4567899  999999999994 4433211     00             012245553  33447899999998  9999


Q ss_pred             EcccCCCCCC
Q psy11780        131 LIGKLDYENK  140 (383)
Q Consensus       131 ~~~~LD~E~~  140 (383)
                      ++.++|||+-
T Consensus        58 v~~rIDRE~L   67 (84)
T PF08266_consen   58 VSERIDREEL   67 (84)
T ss_dssp             ESS--SCCCC
T ss_pred             eCCccCHHHH
Confidence            9999999974

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=95.74  E-value=0.16  Score=39.46  Aligned_cols=69  Identities=22%  Similarity=0.387  Sum_probs=51.3

Q ss_pred             EEeCCCCCCceEEEEEecCC----cccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEE
Q psy11780        203 AVDGDRGINNKILYSISSGS----QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTI  278 (383)
Q Consensus       203 A~D~D~~~n~~i~y~i~~~~----~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~  278 (383)
                      ..|.|   ...++|++....    ..|...|+.++.+.- .+......     .|.+.|.|+|..+              
T Consensus        24 F~d~d---~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~G-tP~~~~~g-----~~~i~v~a~D~~g--------------   80 (97)
T smart00736       24 FTDAD---GDTLTYSATLSDGSALPSWLSFDSDTGTLSG-TPTNSDVG-----SLSLKVTATDSSG--------------   80 (97)
T ss_pred             eECCC---CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEE-ECCCCCCc-----EEEEEEEEEECCC--------------
Confidence            46676   367888886322    679999999888765 34443332     3999999999986              


Q ss_pred             EEeeecccccccCCCCceEEEEEEEEeecCC
Q psy11780        279 IITDVTEESKTVQPAPTAKTEVTIIITDVND  309 (383)
Q Consensus       279 ~~~~~~~~~~~~~~~~s~~~~v~I~V~DvND  309 (383)
                                     .++...++|.|.+.||
T Consensus        81 ---------------~~~~~~f~i~V~~~~~   96 (97)
T smart00736       81 ---------------ASASDTFTITVVNTND   96 (97)
T ss_pred             ---------------CEEEEEEEEEEeCCCC
Confidence                           5778889999999887

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=94.98  E-value=0.17  Score=39.44  Aligned_cols=89  Identities=21%  Similarity=0.292  Sum_probs=52.5

Q ss_pred             EEEEEEeCCCCCCceEEEEEe--cCCcccEEEeCCCceEEEcc-----cCCcccccCCCceEEEEEEEEeCCCCCCCCCC
Q psy11780        199 LQVKAVDGDRGINNKILYSIS--SGSQGIFDIDPNTGNIFTLK-----ELDRESATSNNGAYILEIKVTEESKTVQPAPT  271 (383)
Q Consensus       199 ~~v~A~D~D~~~n~~i~y~i~--~~~~~~F~Id~~tG~i~~~~-----~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~  271 (383)
                      +++.++|+|.+  ....++..  .+..+.|.|++ .|...-.-     ..++-.... ...-.|++.+.|+.        
T Consensus         2 G~Lt~sD~D~g--d~~~~s~~~~~g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge-~~tdsFtvtv~DGt--------   69 (99)
T TIGR01965         2 GQLTISDADAG--QAHFIAQTDAAGQYGTFSIDA-DGQWTYQADNSQTAVQALKAGE-TLTDTFTVTSADGT--------   69 (99)
T ss_pred             CceEEeCCCCC--CceEEecccccCCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCC-EEEEEEEEEEeCCC--------
Confidence            46889999976  34555553  33477889987 57654221     111111110 01256666666632        


Q ss_pred             CceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCC
Q psy11780        272 AKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHEN  326 (383)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~  326 (383)
                                               +..|+|+|.-.|| +|+.... -.+.+.|+
T Consensus        70 -------------------------t~~vtItI~GtND-apvi~~~-~~g~v~ED   97 (99)
T TIGR01965        70 -------------------------SQTVTITITGAND-AAVIGGA-DTGSVTED   97 (99)
T ss_pred             -------------------------eEEEEEEEEccCC-CCEEecc-cceeEecC
Confidence                                     5789999999999 6655443 24666665

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=94.67  E-value=0.79  Score=35.55  Aligned_cols=65  Identities=18%  Similarity=0.242  Sum_probs=44.9

Q ss_pred             EEEEEEeeeCC-CCCCcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCC
Q psy11780        102 KVVYHLENVDG-DEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVED  174 (383)
Q Consensus       102 ~v~y~i~~~~~-~~~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvND  174 (383)
                      .++|++....+ .-..+...++.+  +.+.= .|...+. ..|.+.|.|+|..+    .+....++|.|.+.||
T Consensus        31 ~lty~~~~~~~~~lP~Wl~fd~~~--~~~~G-tP~~~~~-g~~~i~v~a~D~~g----~~~~~~f~i~V~~~~~   96 (97)
T smart00736       31 TLTYSATLSDGSALPSWLSFDSDT--GTLSG-TPTNSDV-GSLSLKVTATDSSG----ASASDTFTITVVNTND   96 (97)
T ss_pred             eEEEEEEeCCCCCCCCeEEEeCCC--CEEEE-ECCCCCC-cEEEEEEEEEECCC----CEEEEEEEEEEeCCCC
Confidence            55566543322 224588888876  56655 4555443 56999999999875    3567889999999885

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=94.57  E-value=0.79  Score=35.77  Aligned_cols=48  Identities=13%  Similarity=0.226  Sum_probs=32.7

Q ss_pred             CCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCC
Q psy11780        135 LDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDV  192 (383)
Q Consensus       135 LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~  192 (383)
                      |..-..-.-.|++.+.|+        .+..|+|.|.-.|| +|+..... ...+.|+.
T Consensus        51 L~~Ge~~tdsFtvtv~DG--------tt~~vtItI~GtND-apvi~~~~-~g~v~ED~   98 (99)
T TIGR01965        51 LKAGETLTDTFTVTSADG--------TSQTVTITITGAND-AAVIGGAD-TGSVTEDS   98 (99)
T ss_pred             hcCCCEEEEEEEEEEeCC--------CeEEEEEEEEccCC-CCEEeccc-ceeEecCC
Confidence            443344456778888885        16889999999997 78765543 45676663

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)

Probab=92.39  E-value=6.3  Score=33.61  Aligned_cols=113  Identities=19%  Similarity=0.282  Sum_probs=60.2

Q ss_pred             cEEEEEE-EEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCC-CcEEEEEEEEeCCCCCCceEEEEE
Q psy11780        141 FLYQLKI-LAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPV-GTSVLQVKAVDGDRGINNKILYSI  218 (383)
Q Consensus       141 ~~~~l~V-~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~-gt~v~~v~A~D~D~~~n~~i~y~i  218 (383)
                      -.|.+.+ .|.|..+.    ..+..+...+.- ...+|.+.- .....+..+... |..=..+.++|.-.+. ..-..+|
T Consensus        15 G~Y~l~~~~a~D~agN----~~~~~~~~~~~i-D~T~Ptisi-~~~~~~~~g~~v~~~~~i~i~~tD~~~~~-~i~sv~l   87 (158)
T PF13750_consen   15 GSYTLTVVTATDAAGN----TSTSTVSETFTI-DNTPPTISI-SDGASVANGSTVYGLVNISINVTDNSDDS-KITSVSL   87 (158)
T ss_pred             ccEEEEEEEEEecCCC----EEEEEEeeEEEE-cCCCCEEEE-ecCCccCCCccccceeeeEEEEEeCCCCc-eEEEEEE
Confidence            5789999 79999874    333334323332 236888765 111223333222 2233467777776543 4456888


Q ss_pred             ecCC-cccEEE--eC-CCceEEEc--ccC-CcccccCCCceEEEEEEEEeCCC
Q psy11780        219 SSGS-QGIFDI--DP-NTGNIFTL--KEL-DRESATSNNGAYILEIKVTEESK  264 (383)
Q Consensus       219 ~~~~-~~~F~I--d~-~tG~i~~~--~~l-D~E~~~~~~~~y~l~V~a~D~~~  264 (383)
                      .++. ...-.+  .. ..|...+.  +.+ ..|...    .|+|+|.|+|..+
T Consensus        88 ~Gg~~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~----~YtLtV~a~D~aG  136 (158)
T PF13750_consen   88 TGGPASDSVSLSWTNKGNGVYTLEYPRIFPSLEADD----SYTLTVSATDKAG  136 (158)
T ss_pred             ECCcccceEEEeeEeccCceEEeecccccCCcCCCC----eEEEEEEEEecCC
Confidence            7654 222222  11 23333332  111 123333    4999999999988

>TIGR00845 caca sodium/calcium exchanger 1

Probab=86.88  E-value=53  Score=36.05  Aligned_cols=137  Identities=15%  Similarity=0.173  Sum_probs=73.7

Q ss_pred             cCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC---cccEEEeCCCceEEEcccCCcccccC
Q psy11780        172 VEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS---QGIFDIDPNTGNIFTLKELDRESATS  248 (383)
Q Consensus       172 vNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~---~~~F~Id~~tG~i~~~~~lD~E~~~~  248 (383)
                      .||..+.|.-..-..++.|+  .|+.-..|.-...|.+..-.+.|+...+.   ..-|.  +.+|.|.-..   -|.   
T Consensus       395 ~dd~~s~i~Fe~~~Y~V~En--~GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~--~~sGTLtF~P---GEt---  464 (928)
T TIGR00845       395 ENDPVSKIFFEPGHYTCLEN--CGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYE--FTEGTLVFKP---GET---  464 (928)
T ss_pred             ccCCcceEEecCCeEEEeec--CcEEEEEEEEccCCCCceEEEEEEccCCccCCCCCcc--ccCceEEECC---Cce---
Confidence            45555555555555678998  47766666544435544467888887553   11222  3456553221   111   


Q ss_pred             CCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccc--cc-------cCCCCceEEEEEEEEeecCCCCCcccCCce
Q psy11780        249 NNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEES--KT-------VQPAPTAKTEVTIIITDVNDETPTFRSPRY  319 (383)
Q Consensus       249 ~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y  319 (383)
                         .-.++|...|...     ......+.+++.......  +.       ....+......+|+|.| ||++|.|....-
T Consensus       465 ---~KtItV~IIDDdi-----~E~DE~F~V~LSNp~~g~~~G~~~~~~~~~~A~Lg~ps~ATVTIlD-DD~aGIfsFe~~  535 (928)
T TIGR00845       465 ---QKEFRIGIIDDDI-----FEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTATVTILD-DDHAGIFTFEED  535 (928)
T ss_pred             ---EEEEEEEEccCCC-----CCCCceEEEEEeCCCCCCcccccccccccccceecCCceEEEEEec-CcccCcccccCc
Confidence               1355555555543     223445666665543210  00       01112234466777787 789998776555


Q ss_pred             EEEEeCCC
Q psy11780        320 VAEIHENS  327 (383)
Q Consensus       320 ~~~V~E~~  327 (383)
                      ...|.|+.
T Consensus       536 ~~sV~Es~  543 (928)
T TIGR00845       536 VFHVSESI  543 (928)
T ss_pred             eEEEEcCC
Confidence            67788874

This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family

>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain

Probab=86.13  E-value=9.5  Score=31.72  Aligned_cols=59  Identities=29%  Similarity=0.416  Sum_probs=42.3

Q ss_pred             ceEEEEEcccCCCCC---CcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCC
Q psy11780        125 GKGVIKLIGKLDYEN---KFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSED  191 (383)
Q Consensus       125 ~~G~I~~~~~LD~E~---~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~  191 (383)
                      |+....+.++||+..   .-...|.|.|+|..+.    .++..+.|.|.|  | .|...... ...|.|+
T Consensus        66 GsYtftL~~~lDH~~g~d~l~l~~~v~a~D~DGD----~s~~~l~VtI~D--D-~P~~~~~~-~~~V~E~  127 (137)
T TIGR03660        66 GSYEFTLEGPLDHAAGSDELTLNFPIIATDFDGD----TSSITLPVTIVD--D-VPTITDVD-ALTVDED  127 (137)
T ss_pred             ccEEEEEcccccCCCCCceEEEeeeEEEEeCCCC----ccccEEEEEEEC--C-CCeecccc-ceEEecc
Confidence            457788899999843   3567889999998874    224588888888  4 57765544 3678775

This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=84.87  E-value=5.8  Score=27.88  Aligned_cols=46  Identities=13%  Similarity=0.304  Sum_probs=27.8

Q ss_pred             CceEEEEEecCCcccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEeCCC
Q psy11780        211 NNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESK  264 (383)
Q Consensus       211 n~~i~y~i~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~  264 (383)
                      +-..+|+|.+-+..+..+...+-.      +.+...+  +|.|.|.|+|.|..+
T Consensus         7 ~~~Y~Y~l~g~d~~W~~~~~~~~~------~~~~~L~--~G~Y~l~V~a~~~~~   52 (66)
T PF07495_consen    7 NIRYRYRLEGFDDEWITLGSYSNS------ISYTNLP--PGKYTLEVRAKDNNG   52 (66)
T ss_dssp             TEEEEEEEETTESSEEEESSTS-E------EEEES----SEEEEEEEEEEETTS
T ss_pred             ceEEEEEEECCCCeEEECCCCcEE------EEEEeCC--CEEEEEEEEEECCCC
Confidence            445677787655667666443222      2222222  256999999999887

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	383
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		9e-12
2wcp_A	214	Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length		2e-07
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		1e-11
3mvs_A	210	Structure Of The N-Terminus Of Cadherin 23 Length =		2e-07
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		1e-11
4aqe_A	214	Crystal Structure Of Deafness Associated Mutant Mou		8e-07
2a4e_A	215	Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length		2e-11
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		6e-11
2wd0_A	214	Crystal Structure Of Nonsyndromic Deafness (Dfnb12)		2e-06
3ubh_A	419	Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le		3e-10
2a62_A	322	Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length		2e-09
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		7e-09
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		4e-04
3lnd_A	207	Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2		1e-07
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		2e-07
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		7e-07
3k5s_A	217	Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len		2e-06
3ppe_A	203	Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Leng		2e-06
2qvi_A	215	Crystal Structure Of N-Cadherin Domains Ec12 Length		2e-05
1ncj_A	215	N-Cadherin, Two-Domain Fragment Length = 215		2e-05
3k5r_A	218	Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt		3e-05
2o72_A	213	Crystal Structure Analysis Of Human E-Cadherin (1-2		2e-04
2ee0_A	114	Solution Structures Of The Ca Domain Of Human Proto		2e-04
3lni_A	213	Crystal Structure Of E-Cadherin Ec12 E89a Length =		4e-04
3lnf_A	213	Crystal Structure Of E-Cadherin Ec12 K14ew2a Length		6e-04
3lne_A	213	Crystal Structure Of E-Cadherin Ec12 K14e Length =		6e-04
1q1p_A	212	E-Cadherin Activation Length = 212		6e-04
1edh_A	226	E-Cadherin Domains 1 And 2 In Complex With Calcium		6e-04
2qvf_B	213	Mouse E-cadherin Domains 1,2 Length = 213		6e-04
3lng_A	215	Crystal Structure Of E-Cadherin Ec12 Aa Extension L		6e-04
3lnh_A	213	Crystal Structure Of E-Cadherin Ec12 W2a Length = 2		6e-04
1ff5_A	219	Structure Of E-Cadherin Double Domain Length = 219		6e-04
3qrb_A	213	Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Lengt		6e-04
2wbx_A	102	Crystal Structure Of Mouse Cadherin-23 Ec1 Length =		8e-04

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 92/228 (40%), Gaps = 40/228 (17%)
Query: 38  NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
           NR P F  +   +  + + E  DTP G+ + +L   D D D L FGV G           
Sbjct: 4   NRLP-FFTNHFFDTYLLISE--DTPVGSSVTQLLARDMDNDPLVFGVSGE---------- 50
Query: 98  NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
                          +    F++      GV+ L   LD E K         V+ S +D 
Sbjct: 51  ---------------EASRFFAVEP--DTGVVWLRQPLDRETK-----SEFTVEFSVSDH 88
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYS 217
           +   T  + ++V DV D  P F       R+ E+ PVGT +  V A D D G    +LYS
Sbjct: 89  QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS 148
Query: 218 ISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKT 265
               S   F ID   G +  ++ELD E       AY L +  T++ KT
Sbjct: 149 FQPPSP-FFAIDSARGIVTVIQELDYEVTQ----AYQLTVNATDQDKT 191

>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 38/157 (24%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSIS-SGSQGIFDIDPNTGNIFTLKELDRESA 246
           +SED PVG+SV Q+ A D D   N+ +++ +S   +   F ++P+TG ++  + LDRE+ 
Sbjct: 20  ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITD 306
           +     + +E  V++    +                                +V I + D
Sbjct: 77  SE----FTVEFSVSDHQGVI------------------------------TRKVNIQVGD 102
Query: 307 VNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV 343
           VND  PTF +  Y   I EN+ + TP+  +    P +
Sbjct: 103 VNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDL 139

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 92/228 (40%), Gaps = 40/228 (17%)
Query: 38  NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
           NR P F  +   +  + + E  DTP G+ + +L   D D D L FGV G           
Sbjct: 3   NRLP-FFTNHFFDTYLLISE--DTPVGSSVTQLLARDMDNDPLVFGVSGE---------- 49
Query: 98  NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
                          +    F++      GV+ L   LD E K         V+ S +D 
Sbjct: 50  ---------------EASRFFAVEP--DTGVVWLRQPLDRETK-----SEFTVEFSVSDH 87
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYS 217
           +   T  + ++V DV D  P F       R+ E+ PVGT +  V A D D G    +LYS
Sbjct: 88  QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS 147
Query: 218 ISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKT 265
               S   F ID   G +  ++ELD E       AY L +  T++ KT
Sbjct: 148 FQPPSP-FFAIDSARGIVTVIQELDYEVTQ----AYQLTVNATDQDKT 190

>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 38/157 (24%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSIS-SGSQGIFDIDPNTGNIFTLKELDRESA 246
           +SED PVG+SV Q+ A D D   N+ +++ +S   +   F ++P+TG ++  + LDRE+ 
Sbjct: 19  ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 75
Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITD 306
           +     + +E  V++    +                                +V I + D
Sbjct: 76  SE----FTVEFSVSDHQGVI------------------------------TRKVNIQVGD 101
Query: 307 VNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV 343
           VND  PTF +  Y   I EN+ + TP+  +    P +
Sbjct: 102 VNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDL 138

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 92/228 (40%), Gaps = 40/228 (17%)
Query: 38  NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
           NR P F  +   +  + + E  DTP G+ + +L   D D D L FGV G           
Sbjct: 4   NRLP-FFTNHFFDTYLLISE--DTPVGSSVTQLLARDMDNDPLVFGVPGE---------- 50
Query: 98  NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
                          +    F++      GV+ L   LD E K         V+ S +D 
Sbjct: 51  ---------------EASRFFAVEP--DTGVVWLRQPLDRETK-----SEFTVEFSVSDH 88
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYS 217
           +   T  + ++V DV D  P F       R+ E+ PVGT +  V A D D G    +LYS
Sbjct: 89  QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS 148
Query: 218 ISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKT 265
               S   F ID   G +  ++ELD E       AY L +  T++ KT
Sbjct: 149 FQPPSP-FFAIDSARGIVTVIQELDYEVTQ----AYQLTVNATDQDKT 191

>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 38/157 (24%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSIS-SGSQGIFDIDPNTGNIFTLKELDRESA 246
           +SED PVG+SV Q+ A D D   N+ +++ +    +   F ++P+TG ++  + LDRE+ 
Sbjct: 20  ISEDTPVGSSVTQLLARDMD---NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITD 306
           +     + +E  V++    +                                +V I + D
Sbjct: 77  SE----FTVEFSVSDHQGVI------------------------------TRKVNIQVGD 102
Query: 307 VNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV 343
           VND  PTF +  Y   I EN+ + TP+  +    P +
Sbjct: 103 VNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDL 139

>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G I     LD E +  Y L   AVDR  N R     +  +VKVQD+ D PPEF+      
Sbjct: 56  GNIHATKTLDREERAQYTLMAQAVDRDTN-RPLEPPSEFIVKVQDINDNPPEFLHEIYHA 114
Query: 187 RVSEDVPVGTSVLQVKAVDGD---RGINNKILYSISSGSQGIFDIDPNTGNIFT-LKELD 242
            V E   VGTSV+QV A D D    G + K++YSI  G Q  F ++  TG I T L  +D
Sbjct: 115 NVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG-QPYFSVEAQTGIIRTALPNMD 173
Query: 243 RES 245
           RE+
Sbjct: 174 REA 176

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 91/228 (39%), Gaps = 40/228 (17%)
Query: 38  NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
           NR P F  +   +  + + E  DTP G+ + +L   D D D L FGV G           
Sbjct: 4   NRLP-FFTNHFFDTYLLISE--DTPVGSSVTQLLARDMDNDPLVFGVSGE---------- 50
Query: 98  NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
                          +    F++      GV+ L   LD E K         V+ S +D 
Sbjct: 51  ---------------EASRFFAVEP--DTGVVWLRQPLDRETK-----SEFTVEFSVSDH 88
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYS 217
           +   T  + ++V  V D  P F       R+ E+ PVGT +  V A D D G    +LYS
Sbjct: 89  QGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS 148
Query: 218 ISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKT 265
               S   F ID   G +  ++ELD E       AY L +  T++ KT
Sbjct: 149 FQPPSP-FFAIDSARGIVTVIQELDYEVTQ----AYQLTVNATDQDKT 191

>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 38/157 (24%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSIS-SGSQGIFDIDPNTGNIFTLKELDRESA 246
           +SED PVG+SV Q+ A D D   N+ +++ +S   +   F ++P+TG ++  + LDRE+ 
Sbjct: 20  ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITD 306
           +     + +E  V++    +                                +V I +  
Sbjct: 77  SE----FTVEFSVSDHQGVI------------------------------TRKVNIQVGG 102
Query: 307 VNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV 343
           VND  PTF +  Y   I EN+ + TP+  +    P +
Sbjct: 103 VNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDL 139

>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
Query: 85  QGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYEN---KF 141
           Q    D+I I+  +   + + +     G     F+I   +G  ++KL  +LD+E+     
Sbjct: 232 QKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSG--IVKLAKELDFEDLRQPH 289
Query: 142 LYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEF-VAVSSVTRVSEDVPVGTSVLQ 200
           +Y L + A + S      + +  + ++V DV D  P+F +       V ED+P+GTS+L+
Sbjct: 290 VYSLIVTATEDSGG---FSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILR 346
Query: 201 VKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVT 260
           VKA+D D G N +I Y +S      F +D N G I   K+LD      NN AY  E  VT
Sbjct: 347 VKAMDSDSGSNAEIEYLVSDDH---FAVDSN-GIIVNNKQLD----ADNNNAY-YEFIVT 397
Query: 261 EESKTVQP 268
            + K   P
Sbjct: 398 AKDKGEPP 405

>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 117 LFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQP 176
           +F I+ + G   I  I +LD E K  Y L   AVD   N +     +  ++KVQD+ D  
Sbjct: 47  IFQINDITGD--IHAIKRLDREEKAEYTLTAQAVDFETN-KPLEPPSEFIIKVQDINDNA 103
Query: 177 PEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILYSISSGSQGIFDIDPNTG 233
           PEF+       V E   +GTSV  V A D D    G + K++YSI  G Q  F I+P T 
Sbjct: 104 PEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEG-QPYFSIEPETA 162
Query: 234 NIFT-LKELDRES 245
            I T L  +DRE+
Sbjct: 163 IIKTALPNMDREA 175

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 2/167 (1%)
Query: 101 LKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNT 160
            K VY + N D D++ +         G++K    LD+E K  Y L +   +    +    
Sbjct: 255 WKAVYTVVN-DPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLV 313
Query: 161 GTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISS 220
            + A +       ++ P F+       V ED  VG  +    A + D  ++ KI Y I  
Sbjct: 314 PSTATVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWR 373
Query: 221 GSQGIFDIDPNTGNIFTLKELDRESATS-NNGAYILEIKVTEESKTV 266
            +    +I+P TG IFT  E+DRE A    N  Y+  I  T++   +
Sbjct: 374 DTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPI 420

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 81/211 (38%), Gaps = 42/211 (19%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G +K+   LD E    Y L   AV  S+N         I++ V D  D  PEF       
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
            V+E    GTSV++V A D D  +N     I Y+I S       + +F ++ +TG I  L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRESATSNNGAYILEIKVTEESKTVQPAPTAKXXXXXXXXXXXXXSKTVQPAPTAK 297
              LDRES  +    Y L ++  +                         +K V       
Sbjct: 176 TSGLDRESYPT----YTLVVQAAD----------------LQGEGLSTTAKAV------- 208
Query: 298 TEVTIIITDVNDETPTFRSPRYVAEIHENSV 328
               I + D+ND  P F    Y  ++ EN V
Sbjct: 209 ----ITVKDINDNAPVFNPSTYQGQVPENEV 235

>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 116 DLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQ 175
           DLF I+   G   I+   +LD E K +Y L+  AV+R    R     +  ++K+ D+ D 
Sbjct: 46  DLFIINENTGD--IQATKRLDREEKPVYILRAQAVNRRTG-RPVEPESEFIIKIHDINDN 102
Query: 176 PPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILYSISSGSQGIFDIDPNT 232
            P F        V E   VGT V+QV A D D    G + K++YSI  G Q  F ++  T
Sbjct: 103 EPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG-QPYFSVESET 161
Query: 233 GNIFT-LKELDRES 245
           G I T L  +DRE+
Sbjct: 162 GIIKTALLNMDREN 175

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 73/202 (36%), Gaps = 42/202 (20%)
Query: 56  KEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEK 115
           K+ P TPA    YR+ G DP G                                 D +  
Sbjct: 249 KDQPHTPAWNAAYRISGGDPTGRFAIL---------------------------TDPNSN 281
Query: 116 DLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDR----SNNDRRNTGTAAILVKVQD 171
           D          G++ ++  +D+E   ++ L + A ++             TA + V V D
Sbjct: 282 D----------GLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVID 331
Query: 172 VEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPN 231
           V + P  F     + R  E +  GT +  + A D DR +   I Y+  S       IDP 
Sbjct: 332 VNENP-YFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPV 390
Query: 232 TGNIFTLKELDRESATSNNGAY 253
            G I T+  LDRES    N  Y
Sbjct: 391 NGQITTIAVLDRESPNVKNNIY 412

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 103/246 (41%), Gaps = 38/246 (15%)
Query: 97  LNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNND 156
           LN ML+     +       ++F+I+   G  +I +   LD E    Y L I A D   N 
Sbjct: 141 LNGMLRYRILSQAPSTPSPNMFTINNETGD-IITVAAGLDREKVQQYTLIIQATDMEGNP 199
Query: 157 RRN-TGTAAILVKVQDVEDQPPEFVAVSSVTRVSED-VPVGTSVLQVKAVDGDRGINNKI 214
               + TA  ++ V DV D PPEF A++    V E+ V V  + L V   D         
Sbjct: 200 TYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRVDVIVANLTVTDKDQPHTPAWNA 259
Query: 215 LYSISSG-SQGIFDI--DPNT--GNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPA 269
            Y IS G   G F I  DPN+  G +  +K +D E+    N  ++L +    +       
Sbjct: 260 AYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFET----NRMFVLTVAAENQ------V 309
Query: 270 PTAKXXXXXXXXXXXXXSKTVQPAPTAKTEVTIIITDVNDETPTFR-SPRYVAE---IHE 325
           P AK                +Q  P +   V++ + DVN E P F  +P+ + +   +H 
Sbjct: 310 PLAKG---------------IQHPPQSTATVSVTVIDVN-ENPYFAPNPKIIRQEEGLHA 353
Query: 326 NSVINT 331
            +++ T
Sbjct: 354 GTMLTT 359

>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Query: 108 ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILV 167
           + VD D K +F I+ ++G   + +   LD E    YQL++   D S   +   G   + +
Sbjct: 40  KGVDQDPKGIFRINEISGD--VSVTRPLDREAIANYQLEVEVTDLSG--KIIDGPVRLDI 95
Query: 168 KVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDG-DRGINNKIL-YSI-----SS 220
            V D  D  P F     V  V E  P GT+V+++ A D  D   +N +L Y+I     + 
Sbjct: 96  SVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTK 155
Query: 221 GSQGIFDIDPNTGNIFTLKE---LDRESATSNNGAYILEIK 258
            S  +F IDP  G+I T+     LDRE+  +     ++E K
Sbjct: 156 PSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAK 196

>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Length = 203

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G I    +LD E K  Y+L    +DR NN R     +  ++KV D+ D  P FV      
Sbjct: 53  GDIYAFERLDREKKAEYELTAHIIDRRNN-RSLEPPSKFIIKVSDINDNAPIFVQKIFNG 111
Query: 187 RVSEDVPVGTSVLQVKAVDGDR---GINNKILYSISSGSQGIFDIDPNTGNIFTLK-ELD 242
            V E   +GTSV +V A D D      +  + Y I  G++  F +D ++G IFT + +LD
Sbjct: 112 SVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE-YFTVD-DSGVIFTARADLD 169
Query: 243 RESATS 248
           RES ++
Sbjct: 170 RESQSA 175

>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 98  NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
           N+ L+        D     +F I+ ++G+  + +   LD E    + L+  AVD + N  
Sbjct: 31  NLSLRYSVTGPGADQPPTGIFIINPISGQ--LSVTKPLDRELIARFHLRAHAVDINGNQV 88
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD--RGINNKIL 215
            N     I++ V D+ D  PEF+       V E    GT V+ V A+D D    +N  + 
Sbjct: 89  ENP--IDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLR 146
Query: 216 YSI-----SSGSQGIFDIDPNTGNIFTLKE-LDRESATSNNGAYILEIKVTE 261
           Y I     S+ S  +F I+  TG+I T+   LDRE        Y L I+ T+
Sbjct: 147 YRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ----YTLIIQATD 194

>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 98  NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
           N+ L+        D     +F I+ ++G+  + +   LD E    + L+  AVD + N  
Sbjct: 31  NLSLRYSVTGPGADQPPTGIFIINPISGQ--LSVTKPLDRELIARFHLRAHAVDINGNQV 88
Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD--RGINNKIL 215
            N     I++ V D+ D  PEF+       V E    GT V+ V A+D D    +N  + 
Sbjct: 89  ENP--IDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLR 146
Query: 216 YSI-----SSGSQGIFDIDPNTGNIFTLKE-LDRESATSNNGAYILEIKVTE 261
           Y I     S+ S  +F I+  TG+I T+   LDRE        Y L I+ T+
Sbjct: 147 YRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ----YTLIIQATD 194

>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 108 ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILV 167
           + VD D K  F I+     G + +   LD E    YQL +   D S   +   G   + V
Sbjct: 41  KGVDQDPKGTFRIN--ENTGSVSVTRTLDRETIATYQLYVETTDASG--KTLEGPVPLEV 96
Query: 168 KVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDG-DRGINNKIL-YSI-----SS 220
            V D  D  P F     +  V E  P GT+V+++ A D  D   +N +L Y+I       
Sbjct: 97  IVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDK 156
Query: 221 GSQGIFDIDPNTGNIFTLKE---LDRESATSNNGAYILEIK 258
            S  +F IDP  G+I T+     LDRE+  +     I+E +
Sbjct: 157 PSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQ 197

>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G +K+   LD E    Y L   AV  + N   +     IL+ V D  D  PEF       
Sbjct: 58  GWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDP--MEILITVTDQNDNKPEFTQEVFKG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSG-----SQGIFDIDPNTGNIFTL 238
            V E    GTSV++V A D D  +N     I Y+I S       + +F I+ NTG I  +
Sbjct: 116 SVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVV 175
Query: 239 KE-LDRES 245
              LDRES
Sbjct: 176 TTGLDRES 183

>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human Protocadherin 9 Length = 114

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILY----SISSGSQGIFDID 229
           D  P F        + E+ PVGTSV+Q+ A D D G N +I Y     ++  ++ +F ++
Sbjct: 9   DNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALN 68
Query: 230 PNTGNIFTLKELDRE 244
             TG I   + LDRE
Sbjct: 69  NTTGLITVQRSLDRE 83

>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a Length = 213

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G +K+   LD E    Y L   AV  S+N         I++ V D  D  PEF       
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
            V+E    GTSV++V A D D  +N     I Y+I S       + +F ++ +TG I  L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRES 245
              LDRES
Sbjct: 176 TSGLDRES 183

>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a Length = 213

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G +K+   LD E    Y L   AV  S+N         I++ V D  D  PEF       
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
            V+E    GTSV++V A D D  +N     I Y+I S       + +F ++ +TG I  L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRES 245
              LDRES
Sbjct: 176 TSGLDRES 183

>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e Length = 213

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G +K+   LD E    Y L   AV  S+N         I++ V D  D  PEF       
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
            V+E    GTSV++V A D D  +N     I Y+I S       + +F ++ +TG I  L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRES 245
              LDRES
Sbjct: 176 TSGLDRES 183

>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G +K+   LD E    Y L   AV  S+N         I++ V D  D  PEF       
Sbjct: 57  GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 114
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
            V+E    GTSV++V A D D  +N     I Y+I S       + +F ++ +TG I  L
Sbjct: 115 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 174
Query: 239 KE-LDRES 245
              LDRES
Sbjct: 175 TSGLDRES 182

>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G +K+   LD E    Y L   AV  S+N         I++ V D  D  PEF       
Sbjct: 60  GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 117
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
            V+E    GTSV++V A D D  +N     I Y+I S       + +F ++ +TG I  L
Sbjct: 118 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 177
Query: 239 KE-LDRES 245
              LDRES
Sbjct: 178 TSGLDRES 185

>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G +K+   LD E    Y L   AV  S+N         I++ V D  D  PEF       
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
            V+E    GTSV++V A D D  +N     I Y+I S       + +F ++ +TG I  L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRES 245
              LDRES
Sbjct: 176 TSGLDRES 183

>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G +K+   LD E    Y L   AV  S+N         I++ V D  D  PEF       
Sbjct: 60  GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 117
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
            V+E    GTSV++V A D D  +N     I Y+I S       + +F ++ +TG I  L
Sbjct: 118 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 177
Query: 239 KE-LDRES 245
              LDRES
Sbjct: 178 TSGLDRES 185

>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G +K+   LD E    Y L   AV  S+N         I++ V D  D  PEF       
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
            V+E    GTSV++V A D D  +N     I Y+I S       + +F ++ +TG I  L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRES 245
              LDRES
Sbjct: 176 TSGLDRES 183

>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G +K+   LD E    Y L   AV  S+N         I++ V D  D  PEF       
Sbjct: 59  GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 116
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
            V+E    GTSV++V A D D  +N     I Y+I S       + +F ++ +TG I  L
Sbjct: 117 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 176
Query: 239 KE-LDRES 245
              LDRES
Sbjct: 177 TSGLDRES 184

>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Length = 213

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT 186
           G +K+   LD E    Y L   AV  S+N         I++ V D  D  PEF       
Sbjct: 58  GWLKVTQPLDREAIAKYILYSHAV--SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG 115
Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINN---KILYSISSGS-----QGIFDIDPNTGNIFTL 238
            V+E    GTSV++V A D D  +N     I Y+I S       + +F ++ +TG I  L
Sbjct: 116 SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL 175
Query: 239 KE-LDRES 245
              LDRES
Sbjct: 176 TSGLDRES 183

>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1 Length = 102

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSIS-SGSQGIFDIDPNTGNIFTLKELDRESA 246
           +SED PVG+SV Q+ A D D   N+ +++ +S   +   F ++P+TG ++  + LDRE+ 
Sbjct: 20  ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETK 76
Query: 247 TSNNGAYILEIKVTEESKTV 266
           +     + +E  V++    +
Sbjct: 77  SE----FTVEFSVSDHQGVI 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	383
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	8e-44
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	7e-29
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	9e-24
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	5e-43
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	2e-40
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	7e-37
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	4e-19
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	5e-16
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	4e-42
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	6e-42
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	2e-37
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	3e-22
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	9e-20
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	1e-41
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	1e-39
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	2e-36
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	7e-21
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	5e-19
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	9e-41
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	5e-40
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	1e-22
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	2e-19
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	4e-40
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	9e-28
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	9e-09
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	2e-39
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	6e-35
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	1e-25
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	4e-20
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	3e-36
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	2e-34
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	2e-19
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	4e-36
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	1e-23
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	5e-35
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	5e-24
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	1e-07
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	6e-35
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	3e-25
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	1e-05
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	9e-35
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	3e-22
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	2e-33
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	1e-24
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-33
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-23
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	1e-05
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	2e-33
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	3e-24
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	6e-22
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	1e-12
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	1e-04
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	5e-21
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	3e-09
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	4e-04
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	3e-18
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	1e-11
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	3e-18
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	5e-07
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	5e-17
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	5e-11
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	5e-16
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	7e-07
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	5e-16
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	4e-06
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	2e-15
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	2e-07
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	1e-14
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	6e-07
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	6e-14
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	3e-04

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  153 bits (389), Expect = 8e-44
 Identities = 80/281 (28%), Positives = 115/281 (40%), Gaps = 48/281 (17%)

Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
           K+ Y L         +F I+ + G   I  I +LD E K  Y L   AVD   N +    
Sbjct: 34  KIKYILSGDGAGT--IFQINDITG--DIHAIKRLDREEKAEYTLTAQAVDFETN-KPLEP 88

Query: 162 TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILYSI 218
            +  ++KVQD+ D  PEF+       V E   +GTSV  V A D D    G + K++YSI
Sbjct: 89  PSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSI 148

Query: 219 SSGSQGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVT 277
             G Q  F I+P T  I T    +DRE+                           +  V 
Sbjct: 149 LEG-QPYFSIEPETAIIKTALPNMDREA-------------------------KEEYLVV 182

Query: 278 IIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLG 337
           I   D+   S       +  T +T+ +TDVND  P F    Y   + E+ V+ T +  + 
Sbjct: 183 IQAKDMGGHS----GGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRV- 237

Query: 338 GVVPQVFDYDQGKNG--TFQMFIEGD-MGTFEITPQKIINE 375
               +  D D G+N   ++   I+GD    FEIT      +
Sbjct: 238 ----KANDQDIGENAQSSYD-IIDGDGTALFEITSDAQAQD 273

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score =  113 bits (285), Expect = 7e-29
 Identities = 61/251 (24%), Positives = 95/251 (37%), Gaps = 42/251 (16%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
           AP F           + E   +  GT +  +   D D     +G                
Sbjct: 103 APEF---LNGPYHATVPE--MSILGTSVTNVTATDADDP--VYGNSA------------- 142

Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIK-LIGKLDYENKFLYQLKILAVDRSNNDRR 158
             K+VY +     + +  FSI       +IK  +  +D E K  Y + I A D   +   
Sbjct: 143 --KLVYSIL----EGQPYFSIEPETA--IIKTALPNMDREAKEEYLVVIQAKDMGGHSGG 194

Query: 159 NTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSI 218
            +GT  + V + DV D PP+F        V EDV +GT++ +VKA D D G N +  Y I
Sbjct: 195 LSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDI 254

Query: 219 SSG-SQGIF----DIDPNTGNIFTLKELDRESATSNNGAYILEIKVT----EESKTVQPA 269
             G    +F    D     G I   K LD E+      +Y L+++      +   + +  
Sbjct: 255 IDGDGTALFEITSDAQAQDGVIRLRKPLDFET----KKSYTLKVEAANIHIDPRFSSRGP 310

Query: 270 PTAKTEVTIII 280
                 V I++
Sbjct: 311 FKDTATVKIVV 321

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score = 99.3 bits (248), Expect = 9e-24
 Identities = 43/187 (22%), Positives = 64/187 (34%), Gaps = 40/187 (21%)

Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKELDRESA 246
           + E       ++     D D G + KI Y +S  G+  IF I+  TG+I  +K LDRE  
Sbjct: 10  LEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEK 68

Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD 306
                 Y L  +  +                                    +E  I + D
Sbjct: 69  AE----YTLTAQAVDFE--------------------------TNKPLEPPSEFIIKVQD 98

Query: 307 VNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYD---QGKNGTFQMFIEGDMG 363
           +ND  P F +  Y A + E S++ T VT +        D D    G +      I     
Sbjct: 99  INDNAPEFLNGPYHATVPEMSILGTSVTNV-----TATDADDPVYGNSAKLVYSILEGQP 153

Query: 364 TFEITPQ 370
            F I P+
Sbjct: 154 YFSIEPE 160

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  159 bits (403), Expect = 5e-43
 Identities = 61/316 (19%), Positives = 100/316 (31%), Gaps = 68/316 (21%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
           AP F   +       + E      G  + RL   D D                       
Sbjct: 373 APIF---DPKTYTALVPE---NEIGFEVQRLSVTDLDMP----------------GTPAW 410

Query: 100 MLKVVYHLENVDGDEKDLFSIST--VNGKGVIKLIGKLDYENKFLYQLKILAVDRSNN-D 156
                     +  +E   F+I+T   + +G++     LD+E +  Y L+I   +      
Sbjct: 411 QAVYK-----IRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSV 465

Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILY 216
              T TA + V V+DV +  P FV   S   VSED+  G  ++ + A D D+    K+ Y
Sbjct: 466 PLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY 524

Query: 217 SISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEV 276
            I +       ++ + G +     LDRES    N  Y + + VT++              
Sbjct: 525 FIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDG------------- 571

Query: 277 TIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFL 336
                             T    + + + DVND  P      +             ++  
Sbjct: 572 --------------VSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQVLTIS-- 615

Query: 337 GGVVPQVFDYDQGKNG 352
                   D D   N 
Sbjct: 616 --------DADIPPNT 623

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  151 bits (384), Expect = 2e-40
 Identities = 70/288 (24%), Positives = 97/288 (33%), Gaps = 55/288 (19%)

Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
           KV Y +  +  D   + +F I    G   + +   LD E    Y L   AV  + +    
Sbjct: 188 KVYYSITGQGADNPPQGVFRIEWETGW--MLVTRPLDREEYDKYVLSSHAVSENGSPV-- 243

Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILY 216
                I + V D  D  P+F        V E V  GT V+ V A D D     +N  + Y
Sbjct: 244 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 303

Query: 217 SISSG-----SQGIFDIDPNTGNIFTLKE-LDRESATSNNGAYILEIKVTEESKTVQPAP 270
           SI           +F I+  TG I  +   LDRE        Y L ++ T+         
Sbjct: 304 SILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPE----YTLTVQATDLE------- 352

Query: 271 TAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVIN 330
                                   + + +  I ITD ND  P F    Y A + EN +  
Sbjct: 353 --------------------GAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI-G 391

Query: 331 TPVTFLGGVVPQVFDYDQGKNGTFQMF--IEGD-MGTFEITPQKIINE 375
             V  L      V D D      +Q    I  +  G F IT     N+
Sbjct: 392 FEVQRL-----SVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQ 434

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score =  141 bits (356), Expect = 7e-37
 Identities = 69/341 (20%), Positives = 113/341 (33%), Gaps = 71/341 (20%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
            P+F    Q      ++E      GT +  +   D D ++ +     +G           
Sbjct: 260 RPKF---TQDVFRGSVRE--GVQPGTQVMAVSATDEDDNIDSL----NG----------- 299

Query: 100 MLKVVYHLE--NVDGDEKDLFSISTVNGKGVIKLIGK-LDYENKFLYQLKILAVDRSNND 156
              + Y +   + +    +LF+I+     GVI LIG  LD E    Y L + A D     
Sbjct: 300 --VLSYSILKQDPEEPIPNLFTINRET--GVISLIGTGLDREKFPEYTLTVQATDLEGA- 354

Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN--KI 214
              +     ++++ D  D  P F   +    V E+  +G  V ++   D D       + 
Sbjct: 355 -GLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQA 412

Query: 215 LYSISSGSQGIFDIDP----NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAP 270
           +Y I     G F+I      N G + T K LD E        Y+L+I V        P P
Sbjct: 413 VYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQ----YVLQITVENAEPFSVPLP 468

Query: 271 TAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVIN 330
           T+   VT+ + DV                         +E P F       ++ E+    
Sbjct: 469 TSTATVTVTVEDV-------------------------NEAPFFVPAVSRVDVSEDLSRG 503

Query: 331 TPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDM-GTFEITPQ 370
             +  L        D D+ +      FI  D      +   
Sbjct: 504 EKIISL-----VAQDPDKQQIQKLSYFIGNDPARWLTVNKD 539

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 88.4 bits (219), Expect = 4e-19
 Identities = 47/288 (16%), Positives = 79/288 (27%), Gaps = 76/288 (26%)

Query: 38  NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
           N AP F         + + E  D   G  I  L   DPD   +                 
Sbjct: 482 NEAPFF---VPAVSRVDVSE--DLSRGEKIISLVAQDPDKQQIQ---------------- 520

Query: 98  NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFL----YQLKILAVDRS 153
               K+ Y +     D     +++  NG  ++   G LD E++++    Y + +L  D  
Sbjct: 521 ----KLSYFI---GNDPARWLTVNKDNG--IVTGNGNLDRESEYVKNNTYTVIMLVTDDG 571

Query: 154 NNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN- 212
            +    TGT  +++ V DV D  P               P       +   D D   N  
Sbjct: 572 VSVG--TGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQV-----LTISDADIPPNTY 624

Query: 213 KILYSISSGSQ-GIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPT 271
               S+S GS         + G    L    +       G Y                  
Sbjct: 625 PYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKK----GDY------------------ 662

Query: 272 AKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRY 319
               + ++++D               T V   +     +    +    
Sbjct: 663 ---SIYVLLSD--------AQNNPQLTVVNATVCSCEGKAIKCQEKLV 699

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 78.8 bits (194), Expect = 5e-16
 Identities = 25/222 (11%), Positives = 59/222 (26%), Gaps = 31/222 (13%)

Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSED-VPVGTSVLQVKAVDGDRGINNKILYSI 218
                +     DV    P F +   +  V+   +  G  + +V   D         LY +
Sbjct: 18  CLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCT--TRKHGLYDV 75

Query: 219 SSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTI 278
                  F + P+ G +   + +     T     + +        K         T + +
Sbjct: 76  ---GDSRFRVLPD-GTVLVKRHVKLHKDTK----FTISTWDARGIK-------HSTNIAV 120

Query: 279 IITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYV---AEIHENSVINTPVTF 335
                       + A +  +++ ++           +   +V    ++ EN     P   
Sbjct: 121 ASKRHRSG----EEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKR- 175

Query: 336 LGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINEAS 377
               + Q+   ++ +       I G            I   +
Sbjct: 176 ----LVQI-KSNKDRFNKVYYSITGQGADNPPQGVFRIEWET 212

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  154 bits (390), Expect = 4e-42
 Identities = 73/288 (25%), Positives = 107/288 (37%), Gaps = 52/288 (18%)

Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
            + Y +     D     +F I+ ++G+  + +   LD E    + L+  AVD + N    
Sbjct: 33  SLRYSVTGPGADQPPTGIFIINPISGQ--LSVTKPLDRELIARFHLRAHAVDINGNQV-- 88

Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD--RGINNKILYS 217
                I++ V D+ D  PEF+       V E    GT V+ V A+D D    +N  + Y 
Sbjct: 89  ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYR 148

Query: 218 ISSG-----SQGIFDIDPNTGNIFTLK-ELDRESATSNNGAYILEIKVTEESKTVQPAPT 271
           I S      S  +F I+  TG+I T+   LDRE        Y L I+             
Sbjct: 149 ILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ----YTLIIQA------------ 192

Query: 272 AKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINT 331
                    TD+           +      I +TDVND  P F +  +  E+ EN V + 
Sbjct: 193 ---------TDM---EGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV-DV 239

Query: 332 PVTFLGGVVPQVFDYDQGKNGTFQM---FIEGD-MGTFEITPQKIINE 375
            V  L      V D DQ     +        GD  G F I      N+
Sbjct: 240 IVANL-----TVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSND 282

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  153 bits (389), Expect = 6e-42
 Identities = 64/343 (18%), Positives = 100/343 (29%), Gaps = 76/343 (22%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
            P F           + E         +  L   D D                  +    
Sbjct: 220 PPEF---TAMTFYGEVPE---NRVDVIVANLTVTDKD------------------QPHTP 255

Query: 100 MLKVVYHLENVDGDEKDLFSIST--VNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
                Y +    GD    F+I T   +  G++ ++  +D+E   ++ L + A ++    +
Sbjct: 256 AWNAAYRI--SGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAK 313

Query: 158 RNTG----TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNK 213
                   TA + V V DV +  P F     + R  E +  GT +  + A D DR +   
Sbjct: 314 GIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQN 372

Query: 214 ILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAK 273
           I Y+  S       IDP  G I T+  LDRES    N  Y      ++            
Sbjct: 373 IRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNG---------- 422

Query: 274 TEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSP-RYVAEIHENSVINTP 332
                             P  +    + I + D+ND  P          E  E + IN  
Sbjct: 423 -----------------IPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPEPNSINIT 465

Query: 333 VTFLGGVVPQVFDYDQGKNG-----TFQMFIEGDMGTFEITPQ 370
                       DYD   N         +        + I   
Sbjct: 466 AL----------DYDIDPNAGPFAFDLPLSPVTIKRNWTINRL 498

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score =  140 bits (356), Expect = 2e-37
 Identities = 71/342 (20%), Positives = 114/342 (33%), Gaps = 67/342 (19%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
            P F           + E   +  GT++  +   D D D        +G           
Sbjct: 105 RPEF---LHQVWNGSVPE--GSKPGTYVMTVTAIDAD-DPNA----LNG----------- 143

Query: 100 MLKVVYHLE--NVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNN-D 156
              + Y +          ++F+I+   G  +I +   LD E    Y L I A D   N  
Sbjct: 144 --MLRYRILSQAPSTPSPNMFTINNETGD-IITVAAGLDREKVQQYTLIIQATDMEGNPT 200

Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN--KI 214
              + TA  ++ V DV D PPEF A++    V E+  V   V  +   D D+        
Sbjct: 201 YGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIVANLTVTDKDQPHTPAWNA 259

Query: 215 LYSISSGS-QGIFDI----DPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPA 269
            Y IS G   G F I    + N G +  +K +D E+       ++L +            
Sbjct: 260 AYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRM----FVLTVAA---------- 305

Query: 270 PTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVI 329
                       +    +K +Q  P +   V++ + DVN+  P F     +    E    
Sbjct: 306 -----------ENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHA 353

Query: 330 NTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGT-FEITPQ 370
            T +T L        D D+      +     D     +I P 
Sbjct: 354 GTMLTTL-----TAQDPDRYMQQNIRYTKLSDPANWLKIDPV 390

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 52/291 (17%), Positives = 87/291 (29%), Gaps = 76/291 (26%)

Query: 38  NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
           N  P F        +IR +E     AGT +  L   DPD  +                  
Sbjct: 333 NENPYF---APNPKIIRQEE--GLHAGTMLTTLTAQDPDRYMQQ---------------- 371

Query: 98  NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFL----YQLKILAVDRS 153
                + Y       D  +   I  VNG   I  I  LD E+  +    Y    LA D  
Sbjct: 372 ----NIRYTK---LSDPANWLKIDPVNG--QITTIAVLDRESPNVKNNIYNATFLASDNG 422

Query: 154 NNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN- 212
                 +GT  + + + D+ D  P+ +         E      + + + A+D D   N  
Sbjct: 423 IPPM--SGTGTLQIYLLDINDNAPQVL--PQEAETCETPE--PNSINITALDYDIDPNAG 476

Query: 213 KILYSISSGS---QGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQP 268
              + +       +  + I+   G+   L  ++    A    G Y               
Sbjct: 477 PFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEA----GIY--------------- 517

Query: 269 APTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRY 319
                 EV IIITD      +  P  +  + + + +   +          +
Sbjct: 518 ------EVPIIITD------SGNPPKSNISILRVKVCQCDSNGDCTDVHHH 556

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score = 90.1 bits (224), Expect = 9e-20
 Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 37/152 (24%)

Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELD 242
           + E+   G    ++  +  DR  N  + YS++         GIF I+P +G +   K LD
Sbjct: 9   LPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67

Query: 243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTI 302
           RE        + L     + +                                   ++ I
Sbjct: 68  RELIAR----FHLRAHAVDING---------------------------NQVENPIDIVI 96

Query: 303 IITDVNDETPTFRSPRYVAEIHENSVINTPVT 334
            + D+ND  P F    +   + E S   T V 
Sbjct: 97  NVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVM 128

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  152 bits (387), Expect = 1e-41
 Identities = 62/316 (19%), Positives = 101/316 (31%), Gaps = 68/316 (21%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
           AP F   +       + E      G  + RL   D D                       
Sbjct: 224 APIF---DPKTYTALVPE---NEIGFEVQRLSVTDLD----------------MPGTPAW 261

Query: 100 MLKVVYHLENVDGDEKDLFSIST--VNGKGVIKLIGKLDYENKFLYQLKILAVD-RSNND 156
                     +  +E   F+I+T   + +G++     LD+E +  Y L+I   +    + 
Sbjct: 262 QAVYK-----IRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSV 316

Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILY 216
              T TA + V V+DV +  P FV   S   VSED+  G  ++ + A D D+    K+ Y
Sbjct: 317 PLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY 375

Query: 217 SISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEV 276
            I +       ++ + G +     LDRES    N  Y + + VT++              
Sbjct: 376 FIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDG------------- 422

Query: 277 TIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFL 336
                             T    + + + DVND  P      +                 
Sbjct: 423 --------------VSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP-------- 460

Query: 337 GGVVPQVFDYDQGKNG 352
              V  + D D   N 
Sbjct: 461 --QVLTISDADIPPNT 474

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  147 bits (373), Expect = 1e-39
 Identities = 75/350 (21%), Positives = 112/350 (32%), Gaps = 83/350 (23%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
              ++I       I++ E    P    + +++ ++ D                       
Sbjct: 5   HHDWVI-----PPIKVSENERGPFPKRLVQIK-SNKDRF--------------------- 37

Query: 100 MLKVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
             KV Y +  +  D   + +F I    G   + +   LD E    Y L   AV  + +  
Sbjct: 38  -NKVYYSITGQGADNPPQGVFRIEWETG--WMLVTRPLDREEYDKYVLSSHAVSENGSPV 94

Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKI 214
                  I + V D  D  P+F        V E V  GT V+ V A D D     +N  +
Sbjct: 95  --EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVL 152

Query: 215 LYSISSG-----SQGIFDIDPNTGNIFTLKE-LDRESATSNNGAYILEIKVTEESKTVQP 268
            YSI           +F I+  TG I  +   LDRE        Y L ++ T+       
Sbjct: 153 SYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPE----YTLTVQATDLE----- 203

Query: 269 APTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSV 328
                                     + + +  I ITD ND  P F    Y A + EN +
Sbjct: 204 ----------------------GAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI 241

Query: 329 INTPVTFLGGVVPQVFDYDQGKNGTFQMF--IEGD-MGTFEITPQKIINE 375
               V  L      V D D      +Q    I  +  G F IT     N+
Sbjct: 242 -GFEVQRL-----SVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQ 285

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score =  138 bits (350), Expect = 2e-36
 Identities = 69/341 (20%), Positives = 113/341 (33%), Gaps = 71/341 (20%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
            P+F    Q      ++E      GT +  +   D D ++ +     +G           
Sbjct: 111 RPKF---TQDVFRGSVRE--GVQPGTQVMAVSATDEDDNIDSL----NG----------- 150

Query: 100 MLKVVYHLE--NVDGDEKDLFSISTVNGKGVIKLIGK-LDYENKFLYQLKILAVDRSNND 156
              + Y +   + +    +LF+I+   G  VI LIG  LD E    Y L + A D     
Sbjct: 151 --VLSYSILKQDPEEPIPNLFTINRETG--VISLIGTGLDREKFPEYTLTVQATDLEGA- 205

Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN--KI 214
              +     ++++ D  D  P F   +    V E+  +G  V ++   D D       + 
Sbjct: 206 -GLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQA 263

Query: 215 LYSISSGSQGIFDIDP----NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAP 270
           +Y I     G F+I      N G + T K LD E        Y+L+I V        P P
Sbjct: 264 VYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQ----YVLQITVENAEPFSVPLP 319

Query: 271 TAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVIN 330
           T+   VT+ + DV                         +E P F       ++ E+    
Sbjct: 320 TSTATVTVTVEDV-------------------------NEAPFFVPAVSRVDVSEDLSRG 354

Query: 331 TPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGT-FEITPQ 370
             +  L        D D+ +      FI  D      +   
Sbjct: 355 EKIISL-----VAQDPDKQQIQKLSYFIGNDPARWLTVNKD 390

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 93.1 bits (232), Expect = 7e-21
 Identities = 37/185 (20%), Positives = 59/185 (31%), Gaps = 48/185 (25%)

Query: 175 QPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDID 229
              ++V        +E  P    ++Q+K+   ++   NK+ YSI+        QG+F I+
Sbjct: 4   HHHDWVIPPIKVSENERGPFPKRLVQIKS---NKDRFNKVYYSITGQGADNPPQGVFRIE 60

Query: 230 PNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKT 289
             TG +   + LDRE        Y+L      E+                          
Sbjct: 61  WETGWMLVTRPLDREEYDK----YVLSSHAVSENG------------------------- 91

Query: 290 VQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV--FDYD 347
                    E+TI + D ND  P F    +   + E     T V         V   D D
Sbjct: 92  --SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVM-------AVSATDED 142

Query: 348 QGKNG 352
              + 
Sbjct: 143 DNIDS 147

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 87.8 bits (218), Expect = 5e-19
 Identities = 46/284 (16%), Positives = 77/284 (27%), Gaps = 76/284 (26%)

Query: 38  NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
           N AP F         + + E  D   G  I  L   DPD                     
Sbjct: 333 NEAPFF---VPAVSRVDVSE--DLSRGEKIISLVAQDPDK-----QQIQK---------- 372

Query: 98  NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFL----YQLKILAVDRS 153
                + Y +     D     +++  NG  ++   G LD E++++    Y + +L  D  
Sbjct: 373 -----LSYFI---GNDPARWLTVNKDNG--IVTGNGNLDRESEYVKNNTYTVIMLVTDDG 422

Query: 154 NNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN- 212
            +    TGT  +++ V DV D  P               P       +   D D   N  
Sbjct: 423 VSVG--TGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTY 475

Query: 213 KILYSISSGSQ-GIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPT 271
               S+S GS         + G    L    +       G Y +                
Sbjct: 476 PYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKK----GDYSI---------------- 515

Query: 272 AKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFR 315
                 ++++D               T V   +     +    +
Sbjct: 516 -----YVLLSD--------AQNNPQLTVVNATVCSCEGKAIKCQ 546

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  150 bits (380), Expect = 9e-41
 Identities = 67/288 (23%), Positives = 102/288 (35%), Gaps = 55/288 (19%)

Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
           KV Y +  +  D     +F I    G   +K+   LD E    Y L   AV  +      
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETG--WLKVTQPLDREAIAKYILYSHAVSSNGEAV-- 88

Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGI---NNKILY 216
                I++ V D  D  PEF        V+E    GTSV++V A D D  +   N  I Y
Sbjct: 89  EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148

Query: 217 SISSG-----SQGIFDIDPNTGNIFTLKE-LDRESATSNNGAYILEIKVTEESKTVQPAP 270
           +I S       + +F ++ +TG I  L   LDRES  +    Y L ++  +         
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT----YTLVVQAADLQ------- 197

Query: 271 TAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVIN 330
                                   +   +  I + D+ND  P F    Y  ++ EN V N
Sbjct: 198 --------------------GEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEV-N 236

Query: 331 TPVTFLGGVVPQVFDYDQGKNGTFQM--FIEGD-MGTFEITPQKIINE 375
             +  L     +V D D      ++    +  D    F +      N+
Sbjct: 237 ARIATL-----KVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTND 279

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score =  148 bits (375), Expect = 5e-40
 Identities = 69/338 (20%), Positives = 105/338 (31%), Gaps = 73/338 (21%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
           AP F     +    ++ E         I  L+  D D                       
Sbjct: 218 APVF---NPSTYQGQVPE---NEVNARIATLKVTDDD------------------APNTP 253

Query: 100 MLKVVYHLENVDGDEKDLFSIST--VNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDR 157
             K VY +     D    F + T      G++K    LD+E K  Y L +   +    + 
Sbjct: 254 AWKAVYTVV---NDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEG 310

Query: 158 -RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILY 216
                TA + V V DV +  P F+       V ED  VG  +    A + D  ++ KI Y
Sbjct: 311 SLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITY 369

Query: 217 SISSGSQGIFDIDPNTGNIFTLKELDRE-SATSNNGAYILEIKVTEESKTVQPAPTAKTE 275
            I   +    +I+P TG IFT  E+DRE +    N  Y+  I  T++             
Sbjct: 370 RIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDG------------ 417

Query: 276 VTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTF 335
                           P  T    + +++ DVND  P                       
Sbjct: 418 ---------------SPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQ-------- 454

Query: 336 LGGVVPQVFDYDQGKNG---TFQMFIEGDMGTFEITPQ 370
               +  + D D   N    T ++   G    + I   
Sbjct: 455 --PHIITILDPDLPPNTSPFTAEL-THGASVNWTIEYN 489

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 98.6 bits (246), Expect = 1e-22
 Identities = 43/290 (14%), Positives = 76/290 (26%), Gaps = 78/290 (26%)

Query: 38  NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENL 97
           N AP F      E  + + E  D   G  I      +PD       +             
Sbjct: 327 NEAPIF---MPAERRVEVPE--DFGVGQEITSYTAREPDT-----FMDQK---------- 366

Query: 98  NVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYE-----NKFLYQLKILAVDR 152
                + Y +     D  +   I+   G   I    ++D E         Y   I+A D 
Sbjct: 367 -----ITYRI---WRDTANWLEINPETG--AIFTRAEMDREDAEHVKNSTYVALIIATDD 416

Query: 153 SNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN 212
            +     TGT  +L+ + DV D  P         +  +  P    +     +D D   N 
Sbjct: 417 GSPIA--TGTGTLLLVLLDVNDNAPIPE--PRNMQFCQRNPQPHII---TILDPDLPPNT 469

Query: 213 -KILYSISSGSQGIFDIDPN--TGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPA 269
                 ++ G+   + I+ N        L+           G Y                
Sbjct: 470 SPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEI----GEY---------------- 509

Query: 270 PTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRY 319
                ++ + + D               T + + + D            +
Sbjct: 510 -----KIHLKLAD--------NQNKDQVTTLDVHVCDCEGTVNNCMKAHH 546

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 36/172 (20%), Positives = 54/172 (31%), Gaps = 46/172 (26%)

Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELD 242
             E+   G     +  +  +R    K+ YSI+         G+F I+  TG +   + LD
Sbjct: 9   CPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLD 67

Query: 243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTI 302
           RE+       YIL       +                             A     E+ I
Sbjct: 68  REAIAK----YILYSHAVSSNG---------------------------EAVEDPMEIVI 96

Query: 303 IITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV--FDYDQGKNG 352
            +TD ND  P F    +   + E +V  T V        +V   D D   N 
Sbjct: 97  TVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVM-------KVSATDADDDVNT 141

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  140 bits (355), Expect = 4e-40
 Identities = 61/244 (25%), Positives = 96/244 (39%), Gaps = 42/244 (17%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
            P F  +   +  + + E  DTP G+ + +L   D D D                     
Sbjct: 5   LPFFT-NHFFDTYLLISE--DTPVGSSVTQLLARDMDND--------------------- 40

Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
              +V+ +     +    F++    G  V+ L   LD E K  + ++    D      + 
Sbjct: 41  --PLVFGV--SGEEASRFFAVEPDTG--VVWLRQPLDRETKSEFTVEFSVSDH-----QG 89

Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSIS 219
             T  + ++V DV D  P F       R+ E+ PVGT +  V A D D G    +LYS  
Sbjct: 90  VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQ 149

Query: 220 SGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTII 279
             S   F ID   G +  ++ELD E   +    Y L +  T++ KT     +    + II
Sbjct: 150 PPSP-FFAIDSARGIVTVIQELDYEVTQA----YQLTVNATDQDKT--RPLSTLANLAII 202

Query: 280 ITDV 283
           ITD+
Sbjct: 203 ITDM 206

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score =  107 bits (270), Expect = 9e-28
 Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 45/201 (22%)

Query: 174 DQPPEFV--AVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDP 230
           ++ P F      +   +SED PVG+SV Q+ A D D   N+ +++ +S       F ++P
Sbjct: 3   NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEP 59

Query: 231 NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTV 290
           +TG ++  + LDRE+ +     + +E  V+                     D        
Sbjct: 60  DTGVVWLRQPLDRETKSE----FTVEFSVS---------------------D-------- 86

Query: 291 QPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGK 350
                   +V I + DVND  PTF +  Y   I EN+ + TP+  +        D D G 
Sbjct: 87  -HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIV-----NATDPDLGA 140

Query: 351 NGTFQMFIEGDMGTFEITPQK 371
            G+     +     F I   +
Sbjct: 141 GGSVLYSFQPPSPFFAIDSAR 161

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score = 54.1 bits (131), Expect = 9e-09
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 32/135 (23%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
           AP F         +R+ E  +TP GT I+ +   DPD      G  G             
Sbjct: 106 APTF---HNQPYSVRIPE--NTPVGTPIFIVNATDPD-----LGAGG------------- 142

Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
              V+Y  +         F+I +   +G++ +I +LDYE    YQL + A D+       
Sbjct: 143 --SVLYSFQ----PPSPFFAIDSA--RGIVTVIQELDYEVTQAYQLTVNATDQDKTRPL- 193

Query: 160 TGTAAILVKVQDVED 174
           +  A + + + D++D
Sbjct: 194 STLANLAIIITDMQD 208

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  144 bits (365), Expect = 2e-39
 Identities = 65/318 (20%), Positives = 114/318 (35%), Gaps = 72/318 (22%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
            P FI      +   ++   + P  T ++ L+  DPD                   + N+
Sbjct: 108 PPYFINRPLP-MQAVVQL--NAPPNTPVFTLQARDPD------------------TDHNI 146

Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSN--NDR 157
                Y +  V       F +   +G  V++  G   ++    Y L + A D++   +DR
Sbjct: 147 ----HYFI--VRDRTGGRFEVDERSG--VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDR 198

Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYS 217
           R   T    + +     + P+F   S    + E+    + ++ +KA       + +I Y+
Sbjct: 199 RFQSTPEERLSIVGG-KRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYT 254

Query: 218 I--SSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTE 275
           +       G F+I P +G +   KELD E        Y L +  TE+S            
Sbjct: 255 LKAQGQGAGTFNIGPTSGIVKLAKELDFED-LRQPHVYSLIVTATEDS------------ 301

Query: 276 VTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVA-EIHENSVINTPVT 334
                              +   ++TI +TDVND  P F  P Y A  + E+  + T + 
Sbjct: 302 ----------------GGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSIL 345

Query: 335 FLGGVVPQVFDYDQGKNG 352
            +     +  D D G N 
Sbjct: 346 RV-----KAMDSDSGSNA 358

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  132 bits (333), Expect = 6e-35
 Identities = 58/286 (20%), Positives = 98/286 (34%), Gaps = 56/286 (19%)

Query: 102 KVVYHLENVDGDEKDLFSISTVNGK------GVIKLIGKLDYENK------FLYQLKILA 149
           K V+ LE     +K+ F I   N        G +++  K DYE          + +    
Sbjct: 26  KSVFQLEK--ETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNM 83

Query: 150 VDRSNNDRRNTGTAAILVKVQDVEDQPPEFV--AVSSVTRVSEDVPVGTSVLQVKAVDGD 207
              +      T    +++ V+DV D+PP F+   +     V  + P  T V  ++A D D
Sbjct: 84  GHNAGIKY--TDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPD 141

Query: 208 RGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTV 266
              N  I Y I      G F++D  +G + T      +        Y+L +K  +++  V
Sbjct: 142 TDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDME----YVLYVKAEDQNGKV 195

Query: 267 QPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHEN 326
                  T     ++                              P F  P Y AEI EN
Sbjct: 196 DDRRFQST-PEERLSI-----------------------VGGKRAPQFYMPSYEAEIPEN 231

Query: 327 SVINTPVTFLGGVVPQVFDYDQGK-NGTFQMFIEGDMGTFEITPQK 371
              ++ +  +     +   +   +   T +   +G  GTF I P  
Sbjct: 232 QKKDSDIISI-----KAKSFADREIRYTLKAQGQGA-GTFNIGPTS 271

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score =  106 bits (266), Expect = 1e-25
 Identities = 52/247 (21%), Positives = 96/247 (38%), Gaps = 48/247 (19%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
           AP+F           + E  +    + I  ++        + + ++              
Sbjct: 216 APQF---YMPSYEAEIPE--NQKKDSDIISIKAKSFADREIRYTLK-------------- 256

Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYEN---KFLYQLKILAVDRSNND 156
                       G     F+I      G++KL  +LD+E+     +Y L + A + S   
Sbjct: 257 ----------AQGQGAGTFNIGPT--SGIVKLAKELDFEDLRQPHVYSLIVTATEDSG-- 302

Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVS-SVTRVSEDVPVGTSVLQVKAVDGDRGINNKIL 215
              + +  + ++V DV D  P+F         V ED+P+GTS+L+VKA+D D G N +I 
Sbjct: 303 -GFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIE 361

Query: 216 YSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTE 275
           Y +S      F +D   G I   K+LD ++  +    Y   +   ++    +P  +    
Sbjct: 362 YLVSDDH---FAVDS-NGIIVNNKQLDADNNNAY---YEFIVTAKDKG---EPPKSGVAT 411

Query: 276 VTIIITD 282
           V +   +
Sbjct: 412 VRVYTKN 418

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score = 90.4 bits (225), Expect = 4e-20
 Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 44/195 (22%)

Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS---------QGIFDIDPNTGNIFT 237
           RV+  V       +++  + D     K ++ +   +            +      G +  
Sbjct: 3   RVTRAVRPTK---RIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRV 59

Query: 238 LKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAK 297
            K+ D E                      +  P    +  +IIT++   +       T  
Sbjct: 60  KKKWDYE----------------------ELGPEKTIDFWVIITNMGHNAG---IKYTDN 94

Query: 298 TEVTIIITDVNDETPTFRSP--RYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQ 355
             V I++ DVNDE P F +      A +  N+  NTPV  L     Q  D D   N  + 
Sbjct: 95  QRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTL-----QARDPDTDHNIHYF 149

Query: 356 MFIEGDMGTFEITPQ 370
           +  +   G FE+  +
Sbjct: 150 IVRDRTGGRFEVDER 164

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  133 bits (337), Expect = 3e-36
 Identities = 53/248 (21%), Positives = 98/248 (39%), Gaps = 42/248 (16%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
            P FI      +   ++   + P  T ++ L+  DPD                   + N+
Sbjct: 103 PPYFINRPLP-MQAVVQL--NAPPNTPVFTLQARDPD------------------TDHNI 141

Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSN--NDR 157
                Y +  V       F +   +G  V++  G   ++    Y L + A D++   +DR
Sbjct: 142 ----HYFI--VRDRTGGRFEVDERSG--VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDR 193

Query: 158 RNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYS 217
           R   T    + +     + P+F   S    + E+    + ++ +KA       + +I Y+
Sbjct: 194 RFQSTPEERLSIVGG-KRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYT 249

Query: 218 ISSGSQ--GIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTE 275
           + +  Q  G F+I P +G +   KELD E     +  Y L +  TE+S       +   +
Sbjct: 250 LKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH-VYSLIVTATEDS----GGFSTSVD 304

Query: 276 VTIIITDV 283
           +TI +TDV
Sbjct: 305 LTIRVTDV 312

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score =  128 bits (324), Expect = 2e-34
 Identities = 62/283 (21%), Positives = 102/283 (36%), Gaps = 52/283 (18%)

Query: 102 KVVYHLENVDGDEKDLFSIS------TVNGKGVIKLIGKLDYENKFLYQLK----ILAVD 151
           K V+ LE     +K+ F I       TV   G +++  K DYE     +      I+   
Sbjct: 21  KSVFQLEK--ETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNM 78

Query: 152 RSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSV--TRVSEDVPVGTSVLQVKAVDGDRG 209
             N   + T    +++ V+DV D+PP F+         V  + P  T V  ++A D D  
Sbjct: 79  GHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTD 138

Query: 210 INNKILYSISSG-SQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQP 268
            N  I Y I    + G F++D  +G + T      +        Y+L +K  +++  V  
Sbjct: 139 HN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDME----YVLYVKAEDQNGKVDD 192

Query: 269 APTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSV 328
                T                        E  + I       P F  P Y AEI EN  
Sbjct: 193 RRFQST-----------------------PEERLSIVG-GKRAPQFYMPSYEAEIPENQK 228

Query: 329 INTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDM-GTFEITPQ 370
            ++ +      + +   +   +   + +  +G   GTF I P 
Sbjct: 229 KDSDI----ISI-KAKSFADREI-RYTLKAQGQGAGTFNIGPT 265

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 41/184 (22%)

Query: 198 VLQVKAVDGDRGINNKILYSISSG---------SQGIFDIDPNTGNIFTLKELDRESATS 248
             +++  + D     K ++ +                +      G +   K+ D E    
Sbjct: 6   TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYE---- 61

Query: 249 NNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVN 308
                             +  P    +  +IIT++   +       T    V I++ DVN
Sbjct: 62  ------------------ELGPEKTIDFWVIITNMGHNAG---IKYTDNQRVIILVKDVN 100

Query: 309 DETPTF--RSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFE 366
           DE P F  R     A +  N+  NTPV  L     Q  D D   N  + +  +   G FE
Sbjct: 101 DEPPYFINRPLPMQAVVQLNAPPNTPVFTL-----QARDPDTDHNIHYFIVRDRTGGRFE 155

Query: 367 ITPQ 370
           +  +
Sbjct: 156 VDER 159

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score =  130 bits (328), Expect = 4e-36
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 18/191 (9%)

Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
            + Y +     D     +F I+ ++G   + +   LD E    + L+  AVD + N    
Sbjct: 33  SLRYSVTGPGADQPPTGIFIINPISG--QLSVTKPLDRELIARFHLRAHAVDINGNQV-- 88

Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDR--GINNKILYS 217
                I++ V D+ D  PEF+       V E    GT V+ V A+D D    +N  + Y 
Sbjct: 89  ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYR 148

Query: 218 ISSG-----SQGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQPAPT 271
           I S      S  +F I+  TG+I T+   LDRE        Y L I+ T+         +
Sbjct: 149 ILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ----YTLIIQATDMEGNPTYGLS 204

Query: 272 AKTEVTIIITD 282
                 I +TD
Sbjct: 205 NTATAVITVTD 215

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 96.7 bits (241), Expect = 1e-23
 Identities = 37/196 (18%), Positives = 58/196 (29%), Gaps = 50/196 (25%)

Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELD 242
           + E+   G    ++  +  DR  N  + YS++         GIF I+P +G +   K LD
Sbjct: 9   LPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67

Query: 243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTI 302
           RE        + L                          D+               ++ I
Sbjct: 68  RELIAR----FHL---------------------RAHAVDIN------GNQVENPIDIVI 96

Query: 303 IITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQ--GKNG------TF 354
            + D+ND  P F    +   + E S   T V  +        D D     NG        
Sbjct: 97  NVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTV-----TAIDADDPNALNGMLRYRILS 151

Query: 355 QMFIEGDMGTFEITPQ 370
           Q         F I  +
Sbjct: 152 QAPSTPSPNMFTINNE 167

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score =  127 bits (321), Expect = 5e-35
 Identities = 61/186 (32%), Positives = 83/186 (44%), Gaps = 15/186 (8%)

Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
            + Y L         +F I   +G   I     LD E +  Y L   AVDR  N      
Sbjct: 35  NIKYILSGEGAGT--IFVIDDKSG--NIHATKTLDREERAQYTLMAQAVDRDTNRPL-EP 89

Query: 162 TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILYSI 218
            +  +VKVQD+ D PPEF+       V E   VGTSV+QV A D D    G + K++YSI
Sbjct: 90  PSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSI 149

Query: 219 SSGSQGIFDIDPNTGNIFT-LKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVT 277
             G    F ++  TG I T L  +DRE+       Y + I+   +        +  T+VT
Sbjct: 150 LEGQP-YFSVEAQTGIIRTALPNMDREAKEE----YHVVIQAK-DMGGHMGGLSGTTKVT 203

Query: 278 IIITDV 283
           I +TD 
Sbjct: 204 ITLTDD 209

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score = 97.7 bits (244), Expect = 5e-24
 Identities = 42/188 (22%), Positives = 58/188 (30%), Gaps = 42/188 (22%)

Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKELDRESA 246
           + E       ++     D D G +  I Y +S  G+  IF ID  +GNI   K LDRE  
Sbjct: 11  IEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREER 69

Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAP-TAKTEVTIIIT 305
                 Y L                          D           P    +E  + + 
Sbjct: 70  AQ----YTL---------------------MAQAVDRD------TNRPLEPPSEFIVKVQ 98

Query: 306 DVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYD---QGKNGTFQMFIEGDM 362
           D+ND  P F    Y A + E S + T V  +        D D    G +      I    
Sbjct: 99  DINDNPPEFLHEIYHANVPERSNVGTSVIQV-----TASDADDPTYGNSAKLVYSILEGQ 153

Query: 363 GTFEITPQ 370
             F +  Q
Sbjct: 154 PYFSVEAQ 161

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 29/140 (20%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
            P F           + E   +  GT + ++  +D D    T+G                
Sbjct: 104 PPEF---LHEIYHANVPE--RSNVGTSVIQVTASDADDP--TYGNSA------------- 143

Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKL-IGKLDYENKFLYQLKILAVDRSNNDRR 158
             K+VY +          FS+    G  +I+  +  +D E K  Y + I A D   +   
Sbjct: 144 --KLVYSILEGQ----PYFSVEAQTG--IIRTALPNMDREAKEEYHVVIQAKDMGGHMGG 195

Query: 159 NTGTAAILVKVQDVEDQPPE 178
            +GT  + + + D      +
Sbjct: 196 LSGTTKVTITLTDDYKDDDK 215

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  126 bits (319), Expect = 6e-35
 Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 15/185 (8%)

Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
            + Y L        DLF I+   G   I+   +LD E K +Y L+  AV+R         
Sbjct: 34  SLKYIL--SGDGAGDLFIINENTG--DIQATKRLDREEKPVYILRAQAVNRRTGRPV-EP 88

Query: 162 TAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILYSI 218
            +  ++K+ D+ D  P F        V E   VGT V+QV A D D    G + K++YSI
Sbjct: 89  ESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSI 148

Query: 219 SSGSQGIFDIDPNTGNIFT-LKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVT 277
             G    F ++  TG I T L  +DRE+       Y + I+  +    +    +  T V 
Sbjct: 149 LQGQP-YFSVESETGIIKTALLNMDRENREQ----YQVVIQAKDMGGQMGG-LSGTTTVN 202

Query: 278 IIITD 282
           I +TD
Sbjct: 203 ITLTD 207

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score =  100 bits (252), Expect = 3e-25
 Identities = 40/187 (21%), Positives = 61/187 (32%), Gaps = 40/187 (21%)

Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKELDRESA 246
           + E        +     D DRG +  + Y +S  G+  +F I+ NTG+I   K LDRE  
Sbjct: 10  LEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEK 68

Query: 247 TSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD 306
                 YIL                          +     +        ++E  I I D
Sbjct: 69  PV----YIL---------------------RAQAVN-----RRTGRPVEPESEFIIKIHD 98

Query: 307 VNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQ---GKNGTFQMFIEGDMG 363
           +ND  P F    Y A + E + + T V  +        D D    G +      I     
Sbjct: 99  INDNEPIFTKDVYTATVPEMADVGTFVVQV-----TATDADDPTYGNSAKVVYSILQGQP 153

Query: 364 TFEITPQ 370
            F +  +
Sbjct: 154 YFSVESE 160

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 29/133 (21%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
            P F    +      + E      GTF+ ++   D D    T+G                
Sbjct: 103 EPIF---TKDVYTATVPE--MADVGTFVVQVTATDADDP--TYGNSA------------- 142

Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKL-IGKLDYENKFLYQLKILAVDRSNNDRR 158
             KVVY +          FS+ +    G+IK  +  +D EN+  YQ+ I A D       
Sbjct: 143 --KVVYSILQGQ----PYFSVESET--GIIKTALLNMDRENREQYQVVIQAKDMGGQMGG 194

Query: 159 NTGTAAILVKVQD 171
            +GT  + + + D
Sbjct: 195 LSGTTTVNITLTD 207

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score =  126 bits (318), Expect = 9e-35
 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 39/233 (16%)

Query: 53  IRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDG 112
           + ++E  D+P    + +L  +  +                           +Y +     
Sbjct: 7   MHIREEIDSPLPHHVGKLTSSVGNK------------------------NAMYII--EGE 40

Query: 113 DEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDV 172
               +F +   +G   I    +LD E K  Y+L    +DR NN       +  ++KV D+
Sbjct: 41  SANTIFKVQGYDG--DIYAFERLDREKKAEYELTAHIIDRRNNRSL-EPPSKFIIKVSDI 97

Query: 173 EDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD---RGINNKILYSISSGSQGIFDID 229
            D  P FV       V E   +GTSV +V A D D      +  + Y I  G++  F +D
Sbjct: 98  NDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE-YFTVD 156

Query: 230 PNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
            +        +LDRES ++    Y + +K  +         ++   V I +TD
Sbjct: 157 DSGVIFTARADLDRESQSA----YEIIVKAKDALG--LTGESSTATVIIRLTD 203

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score = 92.4 bits (230), Expect = 3e-22
 Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 43/191 (22%)

Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKELDRES 245
           R   D P+   V ++ +  G    N   +Y I    +  IF +    G+I+  + LDRE 
Sbjct: 10  REEIDSPLPHHVGKLTSSVG----NKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREK 65

Query: 246 ATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIIT 305
                  Y L   +                            +    +    ++  I ++
Sbjct: 66  KAE----YELTAHII--------------------------DRRNNRSLEPPSKFIIKVS 95

Query: 306 DVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQ---GKNGTFQMFIEGDM 362
           D+ND  P F    +   + E S + T VT +        D D      + T    I    
Sbjct: 96  DINDNAPIFVQKIFNGSVPEMSRLGTSVTKV-----TAEDADDPTVAGHATVTYQIIKGN 150

Query: 363 GTFEITPQKII 373
             F +    +I
Sbjct: 151 EYFTVDDSGVI 161

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =  124 bits (312), Expect = 2e-33
 Identities = 39/293 (13%), Positives = 67/293 (22%), Gaps = 77/293 (26%)

Query: 47  EQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYH 106
            +     +L    D  AGT +  +       + +                     ++  H
Sbjct: 4   SRDAYWEKLYV--DQAAGTPLLYVHALRDAPEEVPSF------------------RLGQH 43

Query: 107 LE---NVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQ------------LKILAVD 151
           L         E +   I    G  ++ L   LD+ +                 LK+    
Sbjct: 44  LYGTYRTRLHENNWIRIQEDTG--LLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSP 101

Query: 152 RSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT----------RVSEDVPVGTSVLQV 201
            S  +          V         P   ++              R+ E+ P GT     
Sbjct: 102 TSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFR 161

Query: 202 KAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTE 261
                       + Y +  G    F   P++  + T   LDRE        Y L    T 
Sbjct: 162 LLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREK----YELVAVCTV 217

Query: 262 ESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTF 314
            +                                      + + D +D  P F
Sbjct: 218 HAGA--------------------------REEVVMVPFPVTVYDEDDSAPEF 244

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score =   99 bits (249), Expect = 1e-24
 Identities = 25/204 (12%), Positives = 50/204 (24%), Gaps = 41/204 (20%)

Query: 186 TRVSEDVPVGTSVLQVKAVDGDR--GINNKILYSI------SSGSQGIFDIDPNTGNIFT 237
            ++  D   GT +L V A+        + ++   +               I  +TG ++ 
Sbjct: 10  EKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYL 69

Query: 238 LKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAK 297
            + LD                     + +         +T+ +      +   +      
Sbjct: 70  QRSLDHS-----------------SWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWP 112

Query: 298 TEVTIIITDVNDETP----------TFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYD 347
               +  +  N   P           F   R    I EN    T   F       +    
Sbjct: 113 GCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFR-----LLPVQF 167

Query: 348 QGKNGTFQ-MFIEGDMGTFEITPQ 370
                +     +EG+   F   P 
Sbjct: 168 LCPQISVAYRLLEGEGLPFRSAPD 191

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score =  123 bits (310), Expect = 2e-33
 Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
           KV Y +  +  D     +F I    G   +K+   LD E    Y L   AV  +      
Sbjct: 33  KVFYSITGQGADKPPVGVFIIERETG--WLKVTQPLDREAIAKYILYSHAVSSNGEAV-- 88

Query: 160 TGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGI---NNKILY 216
                I++ V D  D  PEF        V+E    GTSV++V A D D  +   N  I Y
Sbjct: 89  EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAY 148

Query: 217 SISSG-----SQGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQPAP 270
           +I S       + +F ++ +TG I  L   LDRES  +    Y L ++  +         
Sbjct: 149 TIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT----YTLVVQAADLQ---GEGL 201

Query: 271 TAKTEVTIIITD 282
           +   +  I + D
Sbjct: 202 STTAKAVITVKD 213

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 96.3 bits (240), Expect = 2e-23
 Identities = 35/170 (20%), Positives = 52/170 (30%), Gaps = 42/170 (24%)

Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELD 242
             E+   G     +  +  +R    K+ YSI+         G+F I+  TG +   + LD
Sbjct: 9   CPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLD 67

Query: 243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTI 302
           RE+       YIL                                     A     E+ I
Sbjct: 68  REAIAK----YIL---------------------YSHAVSSN------GEAVEDPMEIVI 96

Query: 303 IITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNG 352
            +TD ND  P F    +   + E +V  T V  +        D D   N 
Sbjct: 97  TVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKV-----SATDADDDVNT 141

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 27/131 (20%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
            P F    Q      + E      GT + ++   D D DV T+    +            
Sbjct: 105 RPEF---TQEVFEGSVAE--GAVPGTSVMKVSATDADDDVNTY----NA----------- 144

Query: 100 MLKVVYHL--ENVDGDEKDLFSISTVNGKGVIK-LIGKLDYENKFLYQLKILAVDRSNND 156
              + Y +  ++ +   K++F+++     GVI  L   LD E+   Y L + A D     
Sbjct: 145 --AIAYTIVSQDPELPHKNMFTVNRDT--GVISVLTSGLDRESYPTYTLVVQAADLQGEG 200

Query: 157 RRNTGTAAILV 167
              T  A I V
Sbjct: 201 LSTTAKAVITV 211

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score =  122 bits (309), Expect = 2e-33
 Identities = 61/240 (25%), Positives = 88/240 (36%), Gaps = 39/240 (16%)

Query: 53  IRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDG 112
           I + E    P    + ++  +D        G +                ++      VD 
Sbjct: 8   ILIPENQRQPFPRDVGKVVDSDRPE-----GSKF---------------RLTGKG--VDQ 45

Query: 113 DEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDV 172
           D K  F I+   G   + +   LD E    YQL +   D S       G   + V V D 
Sbjct: 46  DPKGTFRINENTG--SVSVTRTLDRETIATYQLYVETTDASGKTL--EGPVPLEVIVIDQ 101

Query: 173 EDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDR--GINNKILYSISSG-----SQGI 225
            D  P F     +  V E  P GT+V+++ A D D     N  + Y+I        S  +
Sbjct: 102 NDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNM 161

Query: 226 FDIDPNTGNIFTLK---ELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
           F IDP  G+I T+     LDRE  T  N  Y L I+   +   +    T     TI+I D
Sbjct: 162 FYIDPEKGDIVTVVSPALLDRE--TLENPKYELIIEAQ-DMAGLDVGLTGTATATIVIDD 218

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 98.2 bits (245), Expect = 3e-24
 Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 33/159 (20%)

Query: 180 VAVSSVT-RVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-SQGIFDIDPNTGNIFT 237
           + VS +    ++  P    V +V   D   G   ++         +G F I+ NTG++  
Sbjct: 3   IVVSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSV 62

Query: 238 LKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAK 297
            + LDRE+  +    Y L                      +  TD +             
Sbjct: 63  TRTLDRETIAT----YQL---------------------YVETTDASG------KTLEGP 91

Query: 298 TEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFL 336
             + +I+ D ND  P FR   Y+  + E S   T V  +
Sbjct: 92  VPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRM 130

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 89.1 bits (222), Expect = 6e-22
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 10/120 (8%)

Query: 167 VKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGI- 225
                  D  P F        ++E+   GT +LQ++A D D G+N +I Y   + ++ + 
Sbjct: 2   SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61

Query: 226 --FDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDV 283
               +D  +G +  L  +DRE            +   +     QP  T K  V + I D 
Sbjct: 62  RLLRLDETSGWLSVLHRIDREEVNQ----LRFTVMARDRG---QPPKTDKATVVLNIKDE 114

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 63.3 bits (155), Expect = 1e-12
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 29/138 (21%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
           +PRF   E++     L E  ++  GT I +LR AD D      GV G             
Sbjct: 11  SPRF---EKSVYEADLAE--NSAPGTPILQLRAADLD-----VGVNG------------- 47

Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
             ++ Y         + L  +   +G   + ++ ++D E     +  ++A DR    +  
Sbjct: 48  --QIEYVFGAATESVRRLLRLDETSG--WLSVLHRIDREEVNQLRFTVMARDRGQPPK-- 101

Query: 160 TGTAAILVKVQDVEDQPP 177
           T  A +++ ++D  D  P
Sbjct: 102 TDKATVVLNIKDENDNVP 119

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 13/73 (17%)

Query: 304 ITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQV--FDYDQGKNG----TFQMF 357
            +  ND +P F    Y A++ ENS   TP+        Q+   D D G NG     F   
Sbjct: 4   GSSGNDNSPRFEKSVYEADLAENSAPGTPIL-------QLRAADLDVGVNGQIEYVFGAA 56

Query: 358 IEGDMGTFEITPQ 370
            E       +   
Sbjct: 57  TESVRRLLRLDET 69

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 86.4 bits (215), Expect = 5e-21
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 167 VKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISS----GS 222
                  D  P F        + E+ PVGTSV+Q+ A D D G N +I Y   +     +
Sbjct: 2   SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61

Query: 223 QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
           + +F ++  TG I   + LDRE        + + +  ++       +  A+  VTI +TD
Sbjct: 62  KRLFALNNTTGLITVQRSLDREETAI----HKVTVLASD-----GSSTPARATVTINVTD 112

Query: 283 V 283
           V
Sbjct: 113 V 113

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 32/134 (23%)

Query: 40  APRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
            P F   ++ ++ + + E  + P GT + +L   D D      G                
Sbjct: 11  RPVF---KEGQVEVHIPE--NAPVGTSVIQLHATDAD-----IGSNA------------- 47

Query: 100 MLKVVYHL-ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRR 158
             ++ Y     V    K LF+++   G  +I +   LD E   ++++ +LA D S+    
Sbjct: 48  --EIRYIFGAQVAPATKRLFALNNTTG--LITVQRSLDREETAIHKVTVLASDGSS---- 99

Query: 159 NTGTAAILVKVQDV 172
               A + + V DV
Sbjct: 100 TPARATVTINVTDV 113

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 9/51 (17%)

Query: 304 ITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVF--DYDQGKNG 352
            +  ND  P F+  +    I EN+ + T V        Q+   D D G N 
Sbjct: 4   GSSGNDNRPVFKEGQVEVHIPENAPVGTSVI-------QLHATDADIGSNA 47

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 79.3 bits (196), Expect = 3e-18
 Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 37/133 (27%)

Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINNKILYSIS-----SGSQGIFDIDPNTGNIFTLKEL 241
           R  ED+     + ++ + D       KI Y  +         GIF  + +TG +     L
Sbjct: 20  REGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSIL 78

Query: 242 DRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVT 301
           DRE        ++L                     T    D                E+ 
Sbjct: 79  DREETPF----FLL---------------------TGYALDAR------GNNVEKPLELR 107

Query: 302 IIITDVNDETPTF 314
           I + D+ND  P F
Sbjct: 108 IKVLDINDNEPVF 120

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 27/129 (20%)

Query: 53  IRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHL--ENV 110
           + L+EG D      I ++  +D                    E   +  K+ Y    + +
Sbjct: 17  VALREGEDLSKKNPIAKIH-SDLA------------------EERGL--KITYKYTGKGI 55

Query: 111 DGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQ 170
                 +F  +   G   + +   LD E    + L   A+D   N+        + +KV 
Sbjct: 56  TEPPFGIFVFNKDTG--ELNVTSILDREETPFFLLTGYALDARGNNV--EKPLELRIKVL 111

Query: 171 DVEDQPPEF 179
           D+ D  P F
Sbjct: 112 DINDNEPVF 120

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 78.2 bits (193), Expect = 3e-18
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 8/97 (8%)

Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRES 245
             ++  P    V +V   D   G   ++         +G F I+ NTG++   + LDRE+
Sbjct: 11  PENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRET 70

Query: 246 ATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
             +    Y L ++ T+ S            + +I+ D
Sbjct: 71  IAT----YQLYVETTDAS---GKTLEGPVPLEVIVID 100

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 26/119 (21%)

Query: 53  IRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDG 112
           I + E    P    + ++  +D        G +                ++      VD 
Sbjct: 8   ILIPENQRQPFPRDVGKVVDSDRPE-----GSKF---------------RLTGKG--VDQ 45

Query: 113 DEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD 171
           D K  F I+   G   + +   LD E    YQL +   D S       G   + V V D
Sbjct: 46  DPKGTFRINENTG--SVSVTRTLDRETIATYQLYVETTDASGKTL--EGPVPLEVIVID 100

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 75.4 bits (186), Expect = 5e-17
 Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 37/132 (28%)

Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELD 242
           + E+   G    ++  +   R  N  + YS++         GIF I+P +G +   K LD
Sbjct: 11  LPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 69

Query: 243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTI 302
           RE        + L                          D+               ++ I
Sbjct: 70  RELIAR----FHL---------------------RAHAVDIN------GNQVENPIDIVI 98

Query: 303 IITDVNDETPTF 314
            + D+ND  P F
Sbjct: 99  NVIDMNDNRPEF 110

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
            + Y +     D     +F I+ ++G   + +   LD E    + L+  AVD + N    
Sbjct: 35  SLRYSVTGPGADQPPTGIFIINPISG--QLSVTKPLDRELIARFHLRAHAVDINGNQV-- 90

Query: 160 TGTAAILVKVQDVEDQPPEF 179
                I++ V D+ D  PEF
Sbjct: 91  ENPIDIVINVIDMNDNRPEF 110

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 72.0 bits (177), Expect = 5e-16
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 189 SEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESAT 247
           ++ +P    V +V   D   G   K+         +GIF I+ N+G +   K LDRE+  
Sbjct: 12  NQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIP 71

Query: 248 SNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
           S    Y L+++ T+E+           ++ I++ D
Sbjct: 72  S----YQLQVETTDEN---GKTIEGPVDLEILVID 99

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 26/119 (21%)

Query: 53  IRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDG 112
           I + E    P    + R+  +D         + G G                     VD 
Sbjct: 7   ISIPENQRIPFPKIVGRVVVSDRIPGS-KIKLYGKG---------------------VDQ 44

Query: 113 DEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD 171
           + K +F I+  +G   + +   LD E    YQL++   D +       G   + + V D
Sbjct: 45  EPKGIFKINENSG--EVSVTKALDREAIPSYQLQVETTDENGKTI--EGPVDLEILVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 72.1 bits (177), Expect = 5e-16
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 190 EDVPVGTSVLQVKAVDGDRGINNKILYSISSG-SQGIFDIDPNTGNIFTLKELDRESATS 248
           +  P   SV +V   +G  G   ++         +GIF I+  +G++   + LDRE+  +
Sbjct: 13  QRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIAN 72

Query: 249 NNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
               Y LE++VT+ S            + I + D
Sbjct: 73  ----YELEVEVTDLS---GKIIDGPVRLDISVID 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 108 ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILV 167
           + VD D K +F I+ ++G   + +   LD E    Y+L++   D S       G   + +
Sbjct: 40  KGVDQDPKGIFRINEISG--DVSVTRPLDREAIANYELEVEVTDLSGKII--DGPVRLDI 95

Query: 168 KVQD 171
            V D
Sbjct: 96  SVID 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 190 EDVPVGTSVLQVKAVDGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKELDRESATS 248
           E        +     D DRG +  I Y +S  G+  +F ID  TG+I  ++ LDRE  + 
Sbjct: 13  EYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQ 71

Query: 249 NNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
               Y L  +  +  +        ++E  I I D
Sbjct: 72  ----YTLRAQALD--RRTGRPMEPESEFIIKIQD 99

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
            + Y L         +F+I    G   I  I +LD E +  Y L+  A+DR         
Sbjct: 35  SIKYILS--GEGAGIVFTIDDTTG--DIHAIQRLDREERSQYTLRAQALDRRTGRPM-EP 89

Query: 162 TAAILVKVQD 171
            +  ++K+QD
Sbjct: 90  ESEFIIKIQD 99

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 13/111 (11%)

Query: 177 PEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPN 231
           P    V       E+   G     +  +  ++    K+ YSI+         G+F I+  
Sbjct: 2   PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60

Query: 232 TGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
           TG +   + LDRE   +    Y L       +     A     E+ I +TD
Sbjct: 61  TGWLKVTEPLDRERIAT----YTLFSHAVSSN---GNAVEDPMEILITVTD 104

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 102 KVVYHL--ENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRN 159
           KV Y +  +  D     +F I    G   +K+   LD E    Y L   AV  + N    
Sbjct: 37  KVFYSITGQGADTPPVGVFIIERETG--WLKVTEPLDRERIATYTLFSHAVSSNGNAV-- 92

Query: 160 TGTAAILVKVQD 171
                IL+ V D
Sbjct: 93  EDPMEILITVTD 104

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 66.3 bits (162), Expect = 6e-14
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 183 SSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISS-GSQGIFDIDPNTGNIFTLKEL 241
           + +  + E       ++     D D G + KI Y +S  G+  IF I+  TG+I  +K L
Sbjct: 5   NQMFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRL 63

Query: 242 DRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
           DRE        Y L  +  +            +E  I + D
Sbjct: 64  DREEKAE----YTLTAQAVD--FETNKPLEPPSEFIIKVQD 98

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTG 161
           K+ Y L         +F I+ + G   I  I +LD E K  Y L   AVD   N      
Sbjct: 34  KIKYILS--GDGAGTIFQINDITG--DIHAIKRLDREEKAEYTLTAQAVDFETNKPL-EP 88

Query: 162 TAAILVKVQD 171
            +  ++KVQD
Sbjct: 89  PSEFIIKVQD 98

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 55/374 (14%), Positives = 107/374 (28%), Gaps = 85/374 (22%)

Query: 12  VKEKHVLLIGTYLLLSAIL----------VDSSVSGN------------RAPRFIIDEQT 49
           +  K  +  GT  L   +L          V+  +  N            R P  +     
Sbjct: 55  IMSKDAVS-GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 50  EIVIRLKEGPDTPAGTFIYR----------LRGADPDGDVLTFGVQGHGHDVIRIENLNV 99
           E   RL       A   + R          L    P  +VL  GV G G   + ++    
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL- 172

Query: 100 MLKVVYHLENVDGDEKDLFSISTVNGKGV--IKLIGKLDYENKFLYQLKILAVD-RSNND 156
                          K    +       +  + L    +     L  L+ L      N  
Sbjct: 173 -------------SYK----VQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 157 RRNTGTAAILVKVQDVEDQPPEFVAVSSVTR---VSEDVPVGTSVLQVKAVDGDRGINNK 213
            R+  ++ I +++  ++ +    +          V  +V    +     A +    ++ K
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAWNAFN----LSCK 267

Query: 214 ILYSISSGSQGIFD-IDPNTGNIFTLKELDRESATSNNG----AYILEIKVT---EESKT 265
           IL  +++  + + D +   T    +L      + T +         L+ +      E  T
Sbjct: 268 IL--LTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 266 VQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTE--VTIIITDVNDETPTFRSPRYVA-E 322
             P       ++II   + +   T         +   TII + +N   P      +    
Sbjct: 325 TNP-----RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 323 IHENSVINTPVTFL 336
           +   S  + P   L
Sbjct: 380 VFPPSA-HIPTILL 392

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Length = 125

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 38/135 (28%)

Query: 187 RVSEDVPVGTSVLQVKAVDGDRGINNKILYS-----ISSGSQGIFDIDPNTGNIFTLKEL 241
            V E+   G+ V  +     D G++ + L +     +S G++ +  ++  +GN+   ++L
Sbjct: 16  SVLEETDRGSLVGNLAK---DLGLSLRELITRGAQILSKGNKQLLQLEQKSGNLLLKEKL 72

Query: 242 DRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVT 301
           DRE    +    IL  +V  +S                              P    +  
Sbjct: 73  DREELCGSTNPCILHFQVLLKS------------------------------PVQFIQGE 102

Query: 302 IIITDVNDETPTFRS 316
           I + DVND  P F  
Sbjct: 103 IQLQDVNDHAPEFME 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	383
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	100.0
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	100.0
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	100.0
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	100.0
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	100.0
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	100.0
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	100.0
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	100.0
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	100.0
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	100.0
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	100.0
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	100.0
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	100.0
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	100.0
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.98
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	99.97
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	99.96
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	99.96
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	99.96
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	99.95
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	99.95
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	99.95
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.95
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	99.95
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.92
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.91
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.91
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.88
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.86
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.84
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.84
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.8
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.78
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.74
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.73
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.72
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.7
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.67
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.67
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.67
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.67
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.66
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.66
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.65
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.65
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.6
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.51
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.38
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	93.56
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	91.89
1op4_A	159	Neural-cadherin; beta sandwich, cadherin-like doma	89.91
1op4_A	159	Neural-cadherin; beta sandwich, cadherin-like doma	88.62
3rb5_A	298	Na/Ca exchange protein; CBD12, calcium binding and	86.07
2yhg_A	437	SDE_182CT, cellulose-binding protein; hydrolase, g	84.84
3rb5_A	298	Na/Ca exchange protein; CBD12, calcium binding and	83.64
2yhg_A	437	SDE_182CT, cellulose-binding protein; hydrolase, g	80.56

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=2.3e-53  Score=433.67  Aligned_cols=312  Identities=23%  Similarity=0.292  Sum_probs=278.1

Q ss_pred             eeccccccceeeeeEEEEeeeee-------eeeEEEEEeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEc
Q psy11780          3 NLLNAGVNRVKEKHVLLIGTYLL-------LSAILVDSSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGAD   74 (383)
Q Consensus         3 ~~~~~~lD~E~~~~~~l~~~~~~-------~~~~~~i~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D   74 (383)
                      +.+++.||||++..|.|++.|.|       ..+.+.|.|.|. ||+|+|.   +..|.++|+|  ++++|+.|+++.|+|
T Consensus        60 l~~~~~LDrE~~~~y~l~v~a~d~~~~~~~~~~~v~I~V~DvNDn~P~F~---~~~y~~~V~E--~~~~Gt~v~~v~A~D  134 (550)
T 3q2v_A           60 LKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFT---QEVFEGSVAE--GAVPGTSVMKVSATD  134 (550)
T ss_dssp             EEECSCCCTTTCSEEEEEEEEEETTSCBCSCCEEEEEEEECCSCCCCCBS---CSEEEEEEET--TCCTTCEEEECCBCC
T ss_pred             EEECCccCcccCCeeEEEEEEEeCCCCcccceEEEEEEEEecCCCCCccC---CCceEEEEeC--CCCCCCEEEEEEEEe
Confidence            56789999999999999999988       346788888777 9999998   8899999999  999999999999999


Q ss_pred             CCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCC--CCCCcEEEEeecceEEEEE-cccCCCCCCcEEEEEEEEEe
Q psy11780         75 PDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDG--DEKDLFSISTVNGKGVIKL-IGKLDYENKFLYQLKILAVD  151 (383)
Q Consensus        75 ~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~--~~~~~F~I~~~t~~G~I~~-~~~LD~E~~~~~~l~V~a~D  151 (383)
                      +|.+.                 .+.|+.++|+|....+  ...+.|.|++.+  |.|++ .++||||....|.|.|+|+|
T Consensus       135 ~D~g~-----------------~~~N~~i~Ysi~~~~~~~~~~~~F~id~~t--G~i~~~~~~LDrE~~~~y~l~V~A~D  195 (550)
T 3q2v_A          135 ADDDV-----------------NTYNAAIAYTIVSQDPELPHKNMFTVNRDT--GVISVLTSGLDRESYPTYTLVVQAAD  195 (550)
T ss_dssp             CSCTT-----------------TCGGGCCEEEEEEEESCCSSSCSEEECTTT--CEEEECSSCCCTTTCSEEEEEEEEES
T ss_pred             CCCCC-----------------CCcceEEEEEEecCCCCCCcCCceEEcCCC--eEEEEccCCCCcccCcEEEEEEEEEc
Confidence            99851                 0247799999965332  235799999988  99987 58999999999999999999


Q ss_pred             CCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCc--eEEEEEecCCcccEEEe
Q psy11780        152 RSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN--KILYSISSGSQGIFDID  229 (383)
Q Consensus       152 ~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~--~i~y~i~~~~~~~F~Id  229 (383)
                      .|++  .+++++.|+|+|.|+|||+|.|.+..|.+.|+|+ ++|+.|+++.|+|+|.+.++  .++|+|.+...++|.|+
T Consensus       196 ~g~~--~~s~t~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~g~~v~~v~a~D~D~~~n~~~~~~ysi~~~~~~~F~i~  272 (550)
T 3q2v_A          196 LQGE--GLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVV  272 (550)
T ss_dssp             GGGT--SCCCEEEEEEEEECCSCSCCEESSSEEEEEEESS-CSSCCCEEECEECCSCTTSTTTCEEEEESSCSSCCEEEE
T ss_pred             CCCC--CeeEEEEEEEEecccCCCCCEEecceeEEEEecC-CCCCEEEEEEEEECCCCCCCcEEEEEEEEeCCCCcEEEE
Confidence            8776  5788999999999999999999999999999999 99999999999999998777  46699998668899998


Q ss_pred             ----CCCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEe
Q psy11780        230 ----PNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIIT  305 (383)
Q Consensus       230 ----~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~  305 (383)
                          +.+|.|++.++||||....    |.|.|+|+|++..                        ..+.++++++|+|+|.
T Consensus       273 ~d~~~~tG~i~~~~~LD~E~~~~----y~l~V~a~D~~~~------------------------~~~~~~~~~~v~I~V~  324 (550)
T 3q2v_A          273 TDPTTNDGILKTAKGLDFEAKQQ----YILHVRVENEEPF------------------------EGSLVPSTATVTVDVV  324 (550)
T ss_dssp             ECTTTCCEEEEESSCCCTTTCSE----EEEEEEEEESSCC------------------------CSSCCCEEEEEEEEEE
T ss_pred             ecCCCccEEEEecccCCccccce----EEEEEEEEeCCCC------------------------CCCccceEEEEEEEEE
Confidence                7899999999999999876    9999999998740                        1145789999999999


Q ss_pred             ecCCCCCcccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCeEEEEEEeCC-CccEEEecccEEEE
Q psy11780        306 DVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGD-MGTFEITPQKIINE  375 (383)
Q Consensus       306 DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~i~y~l~~~-~~~F~I~~~tG~~~  375 (383)
                      |+|| +|.|....|.+.|+|++++|+.|+++.     |+|+|.|.|+.++|+|.++ .++|.|++.+|.-.
T Consensus       325 DvND-~P~f~~~~~~~~v~E~~~~gt~v~~v~-----A~D~D~g~n~~i~y~i~~~~~~~f~id~~tG~i~  389 (550)
T 3q2v_A          325 DVNE-APIFMPAERRVEVPEDFGVGQEITSYT-----AREPDTFMDQKITYRIWRDTANWLEINPETGAIF  389 (550)
T ss_dssp             CCCC-CCEESSSSCEEEEETTCCSSCEEEECC-----EECCCCSTTCCCEEEEEECTTCCEEECTTTCEEE
T ss_pred             ecCC-CCeEcCcceEEEEecCCCCCCEEEEEe-----CCCCCCCCCCCEEEEEecCCCCcEEEeCCCcEEE
Confidence            9999 999999999999999999999999998     9999999999999999654 68999999999754

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=9e-54  Score=436.11  Aligned_cols=312  Identities=23%  Similarity=0.326  Sum_probs=277.4

Q ss_pred             eeccccccceeeeeEEEEeeeee-------eeeEEEEEeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEc
Q psy11780          3 NLLNAGVNRVKEKHVLLIGTYLL-------LSAILVDSSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGAD   74 (383)
Q Consensus         3 ~~~~~~lD~E~~~~~~l~~~~~~-------~~~~~~i~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D   74 (383)
                      +.+++.||||++..|.|+|.|.|       +.+.++|.|.|. ||+|+|.   +..|.++|+|  ++++|+.|+++.|+|
T Consensus        66 l~~~~~LDrE~~~~y~l~v~A~D~~~~~~~~~~~v~I~V~DvNDn~P~F~---~~~y~~~V~E--n~~~gt~v~~v~A~D  140 (546)
T 1l3w_A           66 MLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFT---QDVFRGSVRE--GVQPGTQVMAVSATD  140 (546)
T ss_dssp             EEECSCCCTTTCCEEEEEEEEEESSSCBCSCCEEEEEEEECCSCCCCEES---SSCEEEEEET--TCCSSEEEEECCEEC
T ss_pred             EEECCcCCcccCceEEEEEEEEeCCCCcccceEEEEEEEEecccCcCEec---CceeEEEEEC--CCCCCCEEEEEEEEc
Confidence            56789999999999999999998       237888888887 8999998   8899999999  999999999999999


Q ss_pred             CCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCC--CCCcEEEEeecceEEEEEc-ccCCCCCCcEEEEEEEEEe
Q psy11780         75 PDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGD--EKDLFSISTVNGKGVIKLI-GKLDYENKFLYQLKILAVD  151 (383)
Q Consensus        75 ~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~--~~~~F~I~~~t~~G~I~~~-~~LD~E~~~~~~l~V~a~D  151 (383)
                      +|.+.                 ...|++++|+|....+.  ..++|.|++.+  |.|++. ++||||....|.|.|+|+|
T Consensus       141 ~D~g~-----------------~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~t--G~i~~~~~~LD~E~~~~y~l~V~A~D  201 (546)
T 1l3w_A          141 EDDNI-----------------DSLNGVLSYSILKQDPEEPIPNLFTINRET--GVISLIGTGLDREKFPEYTLTVQATD  201 (546)
T ss_dssp             CSCCS-----------------SSSTTCCEEEEEEESSCCSCSCSEEECTTT--CEEEECSCCCCTTTCCEEEEEEEEEH
T ss_pred             CCCCC-----------------CCCCCEEEEEEeCCCCCcccCCcEEEeCCC--ceEEEeccCCCcccCceEEEEEEEEE
Confidence            99840                 01367899999653321  35799999988  999985 7999999999999999999


Q ss_pred             CCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCC--CCCCceEEEEEecCCcccEEEe
Q psy11780        152 RSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD--RGINNKILYSISSGSQGIFDID  229 (383)
Q Consensus       152 ~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D--~~~n~~i~y~i~~~~~~~F~Id  229 (383)
                      .+++  .+++++.|+|+|.|+|||+|.|....|.+.|+|+ ++|+.|+++.|+|+|  .+.|+.++|+|.+...++|.|+
T Consensus       202 ~g~~--~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~v~~v~A~D~D~~~g~n~~v~y~i~~~~~~~F~I~  278 (546)
T 1l3w_A          202 LEGA--GLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNIT  278 (546)
T ss_dssp             HHHT--SCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEE
T ss_pred             CCCC--CcceEEEEEEEEeecCCCCCccccccceEEEEeC-CCCCEEEEEEEEeCCCCCCCCcEEEEEEEeCCCceEEEE
Confidence            9876  5789999999999999999999999999999999 999999999999999  6789999999987457899996


Q ss_pred             --C--CCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEe
Q psy11780        230 --P--NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIIT  305 (383)
Q Consensus       230 --~--~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~  305 (383)
                        +  .+|.|++.++||||....    |.|.|+|+|+++.                        ..+.++++++|+|+|.
T Consensus       279 ~d~~~~~G~i~~~~~LD~E~~~~----y~l~V~a~D~~~~------------------------~~~~~s~~~~v~I~V~  330 (546)
T 1l3w_A          279 TDPESNQGILTTAKGLDFELRKQ----YVLQITVENAEPF------------------------SVPLPTSTATVTVTVE  330 (546)
T ss_dssp             ECTTTCCEEEEESSCCCCSSCCC----EEEEECCEESSCC------------------------SSCCCCCCEEEEEEEE
T ss_pred             ecCCCCeEEEEECccCCcccccE----EEEEEEEEECCCC------------------------CCCCcceeEEEEEEEE
Confidence              2  689999999999999887    9999999998740                        1145789999999999


Q ss_pred             ecCCCCCcccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCeEEEEEEeCC-CccEEEecccEEEE
Q psy11780        306 DVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGD-MGTFEITPQKIINE  375 (383)
Q Consensus       306 DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~i~y~l~~~-~~~F~I~~~tG~~~  375 (383)
                      |+|| +|.|.+..|.+.|+|++++|+.++++.     |+|+|.|.|+.++|+|.++ .++|.|++.+|.-.
T Consensus       331 DvND-~P~f~~~~y~~~V~En~~~g~~v~~v~-----A~D~D~g~n~~i~ysi~~~~~~~F~Id~~tG~i~  395 (546)
T 1l3w_A          331 DVNE-APFFVPAVSRVDVSEDLSRGEKIISLV-----AQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVT  395 (546)
T ss_dssp             CCCC-CCEESSCEECCCBCTTCCSSEEEEECC-----EECCCTTCCCCEEEEECCCSSCCCEEETTTTEEE
T ss_pred             cCCC-CCcEecceEEEEEeCCCCCCCEEEEEE-----EECCCCCCCceEEEEECCCCCCcEEEeCCcEEEE
Confidence            9999 999999999999999999999999998     9999999999999999764 68999999998643

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=6.3e-53  Score=431.19  Aligned_cols=316  Identities=22%  Similarity=0.289  Sum_probs=276.7

Q ss_pred             eeccccccceeeeeEEEEeeeee-------eeeEEEEEeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEc
Q psy11780          3 NLLNAGVNRVKEKHVLLIGTYLL-------LSAILVDSSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGAD   74 (383)
Q Consensus         3 ~~~~~~lD~E~~~~~~l~~~~~~-------~~~~~~i~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D   74 (383)
                      +.+.+.||||++..|.|++.|.|       +.+.++|.|.|. ||+|+|.   +..|.++|+|  ++++|+.|+++.|+|
T Consensus        60 l~~~~~LDrE~~~~y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~---~~~y~~~V~E--n~~~Gt~v~~v~A~D  134 (559)
T 3q2w_A           60 LSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFL---HQVWNGSVPE--GSKPGTYVMTVTAID  134 (559)
T ss_dssp             EEECSCCCTTTCSEEEEEEEEEETTSCEEEEEEEEEEEEECCCCCCCEES---CSEEEEEEET--TCCTTCEEEECCEEC
T ss_pred             EEECCccCCCCCceEEEEEEEEECCCCccceeEEEEEEEEeCCCCCCccC---CCeeEEEEeC--CCCCCcEEEEEEEEc
Confidence            46789999999999999999988       346788888777 9999998   8899999999  999999999999999


Q ss_pred             CCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCC--CCCcEEEEeecceEEEEEcc-cCCCCCCcEEEEEEEEEe
Q psy11780         75 PDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGD--EKDLFSISTVNGKGVIKLIG-KLDYENKFLYQLKILAVD  151 (383)
Q Consensus        75 ~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~--~~~~F~I~~~t~~G~I~~~~-~LD~E~~~~~~l~V~a~D  151 (383)
                      +|.+.                  +.|++++|+|......  ..+.|.|++.+  |.|++.+ +||||+...|.|.|+|+|
T Consensus       135 ~D~g~------------------~~n~~v~Ysi~~~~~~~~~~~~F~Id~~t--G~i~~~~~~LD~E~~~~y~l~V~A~D  194 (559)
T 3q2w_A          135 ADDPN------------------ALNGMLRYRILSQAPSTPSPNMFTINNET--GDIITVAAGLDREKVQQYTLIIQATD  194 (559)
T ss_dssp             SSCTT------------------SGGGCCEEEEEEEESCCSCTTCEEECTTT--CEEEECCSCCCTTTCCEEEEEEEEEH
T ss_pred             CCCCC------------------CCceEEEEEEecCCCCCCCcceEEEeCCc--eEEEEEeccCCcccCCEEEEEEEEEE
Confidence            99852                  3577999999643221  13789999988  9999988 999999999999999999


Q ss_pred             CCC-CCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCC--CceEEEEEecCC-cccEE
Q psy11780        152 RSN-NDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGI--NNKILYSISSGS-QGIFD  227 (383)
Q Consensus       152 ~~~-~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~--n~~i~y~i~~~~-~~~F~  227 (383)
                      .++ +.+.++++++|+|+|.|+|||+|.|....|.+.|+|+. +|+.++++.|+|+|.+.  |+.++|+|.++. .++|.
T Consensus       195 ~~g~p~~~~s~t~~v~I~V~DvNDn~P~f~~~~y~~~V~En~-~g~~v~~v~a~D~D~~~~~n~~~~y~i~~g~~~~~F~  273 (559)
T 3q2w_A          195 MEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFA  273 (559)
T ss_dssp             HHHCTTTCCEEEEEEEEEEECCSCSCCEESSSEEEEEEESSC-SSEEEEEEEEECCSCTTSTTTSBCCEEEESCTTCCEE
T ss_pred             CCCCCCCCccceEEEEEEEEeCCCCCCccccccceeEecCCC-CCcEEEEEEEEcCCCCCCCceeEEEEEecCCCCCceE
Confidence            865 32357899999999999999999999999999999997 89999999999999965  668999998765 78999


Q ss_pred             E----eCCCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEE
Q psy11780        228 I----DPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTII  303 (383)
Q Consensus       228 I----d~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~  303 (383)
                      |    ++.+|.|++.++||||....    |.|+|.|+|.+...                     .+..++++++++|+|+
T Consensus       274 I~~~~~~~~G~i~~~~~LD~E~~~~----y~l~V~A~D~~~~~---------------------~g~~~~~~s~~~v~I~  328 (559)
T 3q2w_A          274 ILTDPNSNDGLVTVVKPIDFETNRM----FVLTVAAENQVPLA---------------------KGIQHPPQSTATVSVT  328 (559)
T ss_dssp             EEECTTTCEEEEEECSCCCTTTCSE----EEEEEECCBSSCCC---------------------TTCCCCGGGEEEEEEE
T ss_pred             EEecCCCCcEEEEeCCCCCCccCce----EEEEEEEEcCCccc---------------------cCCCCCCceEEEEEEE
Confidence            9    57899999999999999876    99999999986300                     0012568999999999


Q ss_pred             EeecCCCCCcccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCeEEEEEEeCC-CccEEEecccEEEE
Q psy11780        304 ITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGD-MGTFEITPQKIINE  375 (383)
Q Consensus       304 V~DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~i~y~l~~~-~~~F~I~~~tG~~~  375 (383)
                      |.|+|| +|.|.+..|.+.|+|++++|+.|+++.     |+|+|.|.|+.++|+|.++ .++|.|++.+|.-.
T Consensus       329 V~DvND-~P~f~~~~~~~~v~En~~~g~~v~~v~-----A~D~D~g~n~~i~Ysi~~~~~~~f~Id~~tG~i~  395 (559)
T 3q2w_A          329 VIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLT-----AQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQIT  395 (559)
T ss_dssp             EECCCC-CCEESSSEEEEEEESCCCTTCEEEECC-----EECSCSSSCCCEEEEEEECTTCCEEECTTTCEEE
T ss_pred             EEeCCC-CCcccccceEEEEeCCCCCCCEEEEEE-----EECCCCCCCCceEEEEccCCccceEecCCceEEE
Confidence            999999 699999999999999999999999998     9999999999999999654 68999999999754

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=7.2e-52  Score=409.39  Aligned_cols=300  Identities=22%  Similarity=0.356  Sum_probs=263.6

Q ss_pred             eeccccccceee---eeEEEEeeeeee----------eeEEEEEeecC-CCCCeEEeCCCee--EEEEEecCCCCCCCeE
Q psy11780          3 NLLNAGVNRVKE---KHVLLIGTYLLL----------SAILVDSSVSG-NRAPRFIIDEQTE--IVIRLKEGPDTPAGTF   66 (383)
Q Consensus         3 ~~~~~~lD~E~~---~~~~l~~~~~~~----------~~~~~i~v~~~-Dn~P~F~~~~~~~--~~~~v~E~~~~~~g~~   66 (383)
                      +.+++.||||+.   +.|.+.|.|.|.          .+.++|.|.|. ||+|+|.   +..  |.+.|+|  ++++|+.
T Consensus        57 i~~~~~LD~E~~~~~~~~~~~V~a~d~g~~~~~~~~~~~~v~I~V~DvNDn~P~F~---~~~~~~~~~v~E--~~~~gt~  131 (419)
T 3ubh_A           57 VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFI---NRPLPMQAVVQL--NAPPNTP  131 (419)
T ss_dssp             EEESSCCCGGGSCTTCEEEEEEEEEC--CCSSSCCEEEEEEEEEEECCCCSCCEEC---CSSSSCEEEECT--TCCTTCE
T ss_pred             EEECCccCccccCccceEEEEEEEEeCCCCCCCCCcceEEEEEEEEECCCCCCccc---CCCCcEEEEEeC--CCCCCCE
Confidence            467899999998   799999999883          37888998887 9999998   554  7899999  9999999


Q ss_pred             EEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEEEEEcccCCCCCCcEEEEE
Q psy11780         67 IYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLK  146 (383)
Q Consensus        67 i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~  146 (383)
                      |+++.|+|+|.+.                      .++|+|.  .++..+.|.|++.+  |.|++.++||||....|.|+
T Consensus       132 v~~v~A~D~D~g~----------------------n~~y~i~--~~~~~~~F~I~~~t--G~i~~~~~ld~e~~~~y~l~  185 (419)
T 3ubh_A          132 VFTLQARDPDTDH----------------------NIHYFIV--RDRTGGRFEVDERS--GVVRTRGTDLFQLDMEYVLY  185 (419)
T ss_dssp             EEECCEECSSTTC----------------------CEEEEEE--EESSSSCEEECTTT--CEEEECSSSCCCBTCEEEEE
T ss_pred             EEEEEEECCCCCc----------------------eeEEEEE--eCCCCCeEEEeCCc--eEEEEecccccccccEEEEE
Confidence            9999999999854                      3889994  34556899999988  99999999999999999999


Q ss_pred             EEEEeCCCC--CCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEec--CC
Q psy11780        147 ILAVDRSNN--DRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISS--GS  222 (383)
Q Consensus       147 V~a~D~~~~--~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~--~~  222 (383)
                      |+|+|.+++  .+.+++++.++|.|.| |||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|   |+.++|+|..  ..
T Consensus       186 V~A~D~g~~~~~~~~~~t~~v~I~V~d-ndn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~d---n~~i~Ysi~~~~~~  261 (419)
T 3ubh_A          186 VKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQG  261 (419)
T ss_dssp             EEEEEEEEEC--CCEEECCCEEEEEEE-SCCCCEESSSCEEEEEETTCCTTCEEEECCEECSS---CCCCEEEEEESSSC
T ss_pred             EEEEECCCCccCcccccceEEEEEEEC-CCCCCceecCeeEEEecCCCCCCcEEEEEEEecCC---CCceEEEEecCCCC
Confidence            999998763  2245778889999999 99999999999999999999999999999999987   6889999963  34


Q ss_pred             cccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEE
Q psy11780        223 QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTI  302 (383)
Q Consensus       223 ~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I  302 (383)
                      .++|.|++.+|.|++.++||||.... ...|.|.|.|+|.++                            .+++++.|+|
T Consensus       262 ~~~F~I~~~tG~i~~~~~LD~E~~~~-~~~y~l~V~a~dd~~----------------------------~~s~~~~v~I  312 (419)
T 3ubh_A          262 AGTFNIGPTSGIVKLAKELDFEDLRQ-PHVYSLIVTATEDSG----------------------------GFSTSVDLTI  312 (419)
T ss_dssp             CSSEEECTTTCEEEECSCCCTTCTTS-CSEEEEEEEEECTTT----------------------------SCEEEEEEEE
T ss_pred             CCcEEEECCCCEEEECcccCcccccc-ccEEEEEEEEEeCCC----------------------------CcEEEEEEEE
Confidence            78999999999999999999998641 134999999997543                            3788999999


Q ss_pred             EEeecCCCCCcccCCceEE-EEeCCCCCCcceEEeecccceEEeCCCCCCeEEEEEEeCCCccEEEecccEEE
Q psy11780        303 IITDVNDETPTFRSPRYVA-EIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIIN  374 (383)
Q Consensus       303 ~V~DvNDn~P~f~~~~y~~-~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~i~y~l~~~~~~F~I~~~tG~~  374 (383)
                      +|.|+|||+|.|..+.|.+ .|+|++++|+.|+++.     |+|+|.|.|+.++|+|.+  ++|.|++ +|.-
T Consensus       313 ~V~DvNDn~P~f~~~~~~~~~v~E~~~~gt~v~~v~-----A~D~D~g~n~~v~Y~i~~--~~F~Id~-~G~i  377 (419)
T 3ubh_A          313 RVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVK-----AMDSDSGSNAEIEYLVSD--DHFAVDS-NGII  377 (419)
T ss_dssp             EEECCCCCCCEESSSEEEEEEEETTCCTTCEEEECC-----EECSSCGGGGCEEEEESC--TTEEECT-TCEE
T ss_pred             EEEccCCCCCcccCCcceeEEecCCCCCCCEEEEEE-----EEeCCCCCCCEEEEEEcC--CcEEECC-CeEE
Confidence            9999999999999999987 7999999999999998     999999999999999964  4899998 7754

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=5.7e-52  Score=442.30  Aligned_cols=312  Identities=23%  Similarity=0.326  Sum_probs=277.9

Q ss_pred             eeccccccceeeeeEEEEeeeee-------eeeEEEEEeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEc
Q psy11780          3 NLLNAGVNRVKEKHVLLIGTYLL-------LSAILVDSSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGAD   74 (383)
Q Consensus         3 ~~~~~~lD~E~~~~~~l~~~~~~-------~~~~~~i~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D   74 (383)
                      +.+.+.||||+++.|.|++.|.|       +.+.++|.|.|. ||+|+|.   +..|.++|+|  ++++|+.|+++.|+|
T Consensus       215 l~~~~~LDrE~~~~y~l~v~A~D~g~~~~~~~~~v~I~V~DvNDn~P~F~---~~~y~~~V~E--n~~~Gt~V~~v~AtD  289 (880)
T 1q55_A          215 MLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFT---QDVFRGSVRE--GVQPGTQVMAVSATD  289 (880)
T ss_dssp             EEECSCCCTTTCCEEEEEEEEEESSSCBCSCCEEEEEEEECCSCCCCEES---SSCEEEEEET--TCCSSEEEEECCEEC
T ss_pred             EEECCccCccccCccEEEEEEEECCCCceeeeEEEEEEEEecCCCCCCcc---CCcEEEEEeC--CCCCCceeEEEEEEc
Confidence            56789999999999999999998       347888888777 8999998   8899999999  999999999999999


Q ss_pred             CCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCC--CCCcEEEEeecceEEEEEc-ccCCCCCCcEEEEEEEEEe
Q psy11780         75 PDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGD--EKDLFSISTVNGKGVIKLI-GKLDYENKFLYQLKILAVD  151 (383)
Q Consensus        75 ~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~--~~~~F~I~~~t~~G~I~~~-~~LD~E~~~~~~l~V~a~D  151 (383)
                      +|.+.                 .+.|++++|+|....+.  ..+.|.|++.+  |.|++. ++||||....|.|.|+|+|
T Consensus       290 ~D~g~-----------------~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~t--G~I~~~~~~LDrE~~~~y~l~V~A~D  350 (880)
T 1q55_A          290 EDDNI-----------------DSLNGVLSYSILKQDPEEPIPNLFTINRET--GVISLIGTGLDREKFPEYTLTVQATD  350 (880)
T ss_dssp             CSCCS-----------------SSSTTCCEEEEEEESSCCSCSCSEEECTTT--CEEEECSCCCCTTTCCEEEEEEEEEH
T ss_pred             CCCCC-----------------CCcCcEEEEEEcCCCCCcccCCeEEEccCC--ccEEEecccCCHHHcceeEEEEEEEE
Confidence            99841                 01467999999653321  35799999988  999985 7899999999999999999


Q ss_pred             CCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCC--CCCCceEEEEEecCCcccEEEe
Q psy11780        152 RSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD--RGINNKILYSISSGSQGIFDID  229 (383)
Q Consensus       152 ~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D--~~~n~~i~y~i~~~~~~~F~Id  229 (383)
                      .+++  .++++++|+|+|.|+|||+|.|....|.+.|+|+ ++|+.|+++.|+|+|  .+.|+.++|+|.++..++|.|+
T Consensus       351 ~g~~--~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~gt~V~~v~A~D~D~~~g~n~~v~Ysi~~~~~~~F~I~  427 (880)
T 1q55_A          351 LEGA--GLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNIT  427 (880)
T ss_dssp             HHHT--SCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEE
T ss_pred             CCCC--CccceeEEEEEEEeccCCCCCccccceEEEeecC-CCCcEEEEEEEECCCCCCCCCceEEEEEecCCCceEEEE
Confidence            9876  5789999999999999999999999999999999 999999999999999  6789999999987557899995


Q ss_pred             --C--CCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEe
Q psy11780        230 --P--NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIIT  305 (383)
Q Consensus       230 --~--~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~  305 (383)
                        +  .+|.|++.++||||....    |.|+|+|+|.+..                        ..+.++++++|+|+|.
T Consensus       428 ~d~~~~~G~i~~~~~LD~E~~~~----y~l~V~A~D~~~~------------------------~~~~~sst~tV~I~V~  479 (880)
T 1q55_A          428 TDPESNQGILTTAKGLDFELRKQ----YVLQITVENAEPF------------------------SVPLPTSTATVTVTVE  479 (880)
T ss_dssp             ECTTTCCEEEEESSCCCCSSCCC----EEEEECCEESSCC------------------------SSCCCCCCEEEEEEEE
T ss_pred             ecCCCceEEEecccCCCcccCCc----EEEEEEEEECCCC------------------------CCCCcceeEEEEEEEE
Confidence              3  579999999999999887    9999999998740                        1145789999999999


Q ss_pred             ecCCCCCcccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCeEEEEEEeCC-CccEEEecccEEEE
Q psy11780        306 DVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGD-MGTFEITPQKIINE  375 (383)
Q Consensus       306 DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~i~y~l~~~-~~~F~I~~~tG~~~  375 (383)
                      |+|| +|+|.+..|.+.|+|++++|+.|+++.     |+|+|.|.|+.++|+|.++ .++|.|++.+|...
T Consensus       480 DvND-~P~f~~~~y~~~V~En~~~Gt~V~~v~-----A~D~D~g~n~~v~Ysi~~~~~~~F~Id~~tG~I~  544 (880)
T 1q55_A          480 DVNE-APFFVPAVSRVDVSEDLSRGEKIISLV-----AQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVT  544 (880)
T ss_dssp             CCCC-CCEESSCEECCCBCTTCCSSEEEEECC-----EECCCTTCCCCEEEEECCCSSCCCEEETTTTEEE
T ss_pred             eCCC-CCEEecCceEEEEeCCCCCCCEEEEEE-----EEeCCCCCCCcEEEEECCCCCCCEEEeCCccEEE
Confidence            9999 999999999999999999999999998     9999999999999999764 68999999999754

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=100.00  E-value=1.3e-50  Score=414.16  Aligned_cols=309  Identities=24%  Similarity=0.327  Sum_probs=268.9

Q ss_pred             eeeccccccceeeeeEEEEeeeee----------eeeEEEEEeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEE
Q psy11780          2 INLLNAGVNRVKEKHVLLIGTYLL----------LSAILVDSSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRL   70 (383)
Q Consensus         2 ~~~~~~~lD~E~~~~~~l~~~~~~----------~~~~~~i~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v   70 (383)
                      |.++.+.||||+++.|.|+|.|.|          +.+.++|.|.|. ||+|+|.   +..|.++|+|  +. +|+.|+++
T Consensus       171 i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t~~v~I~V~DvNDn~P~f~---~~~y~~~V~E--n~-~g~~v~~v  244 (559)
T 3q2w_A          171 IITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFT---AMTFYGEVPE--NR-VDVIVANL  244 (559)
T ss_dssp             EEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEEEEEEEEEEECCSCSCCEES---SSEEEEEEES--SC-SSEEEEEE
T ss_pred             EEEEeccCCcccCCEEEEEEEEEECCCCCCCCccceEEEEEEEEeCCCCCCccc---cccceeEecC--CC-CCcEEEEE
Confidence            334445999999999999999988          347888998887 9999998   8899999999  76 89999999


Q ss_pred             EEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEee--cceEEEEEcccCCCCCCcEEEEEEE
Q psy11780         71 RGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTV--NGKGVIKLIGKLDYENKFLYQLKIL  148 (383)
Q Consensus        71 ~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~--t~~G~I~~~~~LD~E~~~~~~l~V~  148 (383)
                      .|+|+|.+.                  +.|++++|+|  ..++..+.|.|...  +.+|.|++.++||||....|.|+|.
T Consensus       245 ~a~D~D~~~------------------~~n~~~~y~i--~~g~~~~~F~I~~~~~~~~G~i~~~~~LD~E~~~~y~l~V~  304 (559)
T 3q2w_A          245 TVTDKDQPH------------------TPAWNAAYRI--SGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVA  304 (559)
T ss_dssp             EEECCSCTT------------------STTTSBCCEE--EESCTTCCEEEEECTTTCEEEEEECSCCCTTTCSEEEEEEE
T ss_pred             EEEcCCCCC------------------CCceeEEEEE--ecCCCCCceEEEecCCCCcEEEEeCCCCCCccCceEEEEEE
Confidence            999999853                  2355789999  44677889999642  3459999999999999999999999


Q ss_pred             EEeCCCC----CCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCcc
Q psy11780        149 AVDRSNN----DRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQG  224 (383)
Q Consensus       149 a~D~~~~----~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~~~  224 (383)
                      |+|.+..    .+.++++++|+|.|.|+|| +|.|....|.+.|+|+.++|+.|+++.|+|+|.+.|+.++|+|.++..+
T Consensus       305 A~D~~~~~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~~~~~v~En~~~g~~v~~v~A~D~D~g~n~~i~Ysi~~~~~~  383 (559)
T 3q2w_A          305 AENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPAN  383 (559)
T ss_dssp             CCBSSCCCTTCCCCGGGEEEEEEEEECCCC-CCEESSSEEEEEEESCCCTTCEEEECCEECSCSSSCCCEEEEEEECTTC
T ss_pred             EEcCCccccCCCCCCceEEEEEEEEEeCCC-CCcccccceEEEEeCCCCCCCEEEEEEEECCCCCCCCceEEEEccCCcc
Confidence            9997531    1246889999999999999 6999999999999999999999999999999999999999999987789


Q ss_pred             cEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEE
Q psy11780        225 IFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIII  304 (383)
Q Consensus       225 ~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V  304 (383)
                      +|.|++.+|.|++.+.||||........|.|+|.|+|+|.                           |+++++++|.|+|
T Consensus       384 ~f~Id~~tG~i~~~~~lDrE~~~~~~~~y~l~V~A~D~g~---------------------------p~~ss~~~v~I~V  436 (559)
T 3q2w_A          384 WLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGI---------------------------PPMSGTGTLQIYL  436 (559)
T ss_dssp             CEEECTTTCEEEESSCCCSSSTTSCSSEEEEEEEEEECSS---------------------------SCCEEEEEEEEEE
T ss_pred             ceEecCCceEEEEccccCcccccccCCEEEEEEEEEcCCC---------------------------CcceEEEEEEEEE
Confidence            9999999999999999999976322345999999999998                           8899999999999


Q ss_pred             eecCCCCCcccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCe-EEEEEEeCC----CccEEEecccEE
Q psy11780        305 TDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNG-TFQMFIEGD----MGTFEITPQKII  373 (383)
Q Consensus       305 ~DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~-~i~y~l~~~----~~~F~I~~~tG~  373 (383)
                      .|+|||+|.|....  ..++|+  .+..++++.     |+|+|.|.|+ .++|+|...    .+.|+|++.+|.
T Consensus       437 ~DvNDn~P~f~~~~--~~v~e~--~~~~v~~v~-----A~D~D~~~n~~~~~ysl~~~~~~~~~~f~i~~~~G~  501 (559)
T 3q2w_A          437 LDINDNAPQVLPQE--AETCET--PEPNSINIT-----ALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGD  501 (559)
T ss_dssp             ECCSCCCCEESCTT--CCCCSC--CCTTCEEEC-----EECSCCTTSSSSCEEECCSSSHHHHHHEEEEECSSS
T ss_pred             EEccCCCCcccCCc--eEEeec--CCCcEEEEE-----EEcCCCCCCCCCEEEEEcCCCCccCCCeEEEecCCC
Confidence            99999999998764  457888  455677888     9999999988 799999742    568999998886

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=100.00  E-value=2.4e-49  Score=403.93  Aligned_cols=306  Identities=25%  Similarity=0.334  Sum_probs=262.8

Q ss_pred             eeeccccccceeeeeEEEEeeeee-------eeeEEEEEeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEE
Q psy11780          2 INLLNAGVNRVKEKHVLLIGTYLL-------LSAILVDSSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGA   73 (383)
Q Consensus         2 ~~~~~~~lD~E~~~~~~l~~~~~~-------~~~~~~i~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~   73 (383)
                      |.++.++||||+++.|.|+|+|.|       +.+.++|.|.|. ||+|+|.   +..|.++|+|  + ++|+.|+++.|+
T Consensus       172 i~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~DvNDn~P~F~---~~~y~~~V~E--n-~~g~~v~~v~a~  245 (550)
T 3q2v_A          172 ISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFN---PSTYQGQVPE--N-EVNARIATLKVT  245 (550)
T ss_dssp             EEECSSCCCTTTCSEEEEEEEEESGGGTSCCCEEEEEEEEECCSCSCCEES---SSEEEEEEES--S-CSSCCCEEECEE
T ss_pred             EEEccCCCCcccCcEEEEEEEEEcCCCCCeeEEEEEEEEecccCCCCCEEe---cceeEEEEec--C-CCCCEEEEEEEE
Confidence            345678999999999999999999       568999999887 8999998   8899999999  8 999999999999


Q ss_pred             cCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEee--cceEEEEEcccCCCCCCcEEEEEEEEEe
Q psy11780         74 DPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTV--NGKGVIKLIGKLDYENKFLYQLKILAVD  151 (383)
Q Consensus        74 D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~--t~~G~I~~~~~LD~E~~~~~~l~V~a~D  151 (383)
                      |+|.+.                  +.+.+++|+|..   +..+.|.|+.+  +++|.|++.++||||....|.|.|+|+|
T Consensus       246 D~D~~~------------------n~~~~~~ysi~~---~~~~~F~i~~d~~~~tG~i~~~~~LD~E~~~~y~l~V~a~D  304 (550)
T 3q2v_A          246 DDDAPN------------------TPAWKAVYTVVN---DPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVEN  304 (550)
T ss_dssp             CCSCTT------------------STTTCEEEEESS---CSSCCEEEEECTTTCCEEEEESSCCCTTTCSEEEEEEEEEE
T ss_pred             ECCCCC------------------CCcEEEEEEEEe---CCCCcEEEEecCCCccEEEEecccCCccccceEEEEEEEEe
Confidence            999853                  112257799953   56789999842  2349999999999999999999999999


Q ss_pred             CCCC-CCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCcccEEEeC
Q psy11780        152 RSNN-DRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDP  230 (383)
Q Consensus       152 ~~~~-~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~~~~F~Id~  230 (383)
                      .++. .+.+++++.|+|+|.|+|| +|.|....|.+.|+|+.++|+.|+++.|+|+|.|.|+.++|+|.++..++|.|++
T Consensus       305 ~~~~~~~~~~~~~~v~I~V~DvND-~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n~~i~y~i~~~~~~~f~id~  383 (550)
T 3q2v_A          305 EEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINP  383 (550)
T ss_dssp             SSCCCSSCCCEEEEEEEEEECCCC-CCEESSSSCEEEEETTCCSSCEEEECCEECCCCSTTCCCEEEEEECTTCCEEECT
T ss_pred             CCCCCCCccceEEEEEEEEEecCC-CCeEcCcceEEEEecCCCCCCEEEEEeCCCCCCCCCCCEEEEEecCCCCcEEEeC
Confidence            8742 1246889999999999999 9999999999999999999999999999999999999999999887789999999


Q ss_pred             CCceEEEcccCCccccc-CCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCC
Q psy11780        231 NTGNIFTLKELDRESAT-SNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVND  309 (383)
Q Consensus       231 ~tG~i~~~~~lD~E~~~-~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvND  309 (383)
                      .+|.|++.++||||... ..+..|.|+|.|+|+|.                           |+++++++|.|+|.|+||
T Consensus       384 ~tG~i~~~~~lDrE~~~~~~~~~y~l~V~A~D~g~---------------------------p~~s~~~~v~I~V~DvND  436 (550)
T 3q2v_A          384 ETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGS---------------------------PIATGTGTLLLVLLDVND  436 (550)
T ss_dssp             TTCEEEECSCCCTTCTTTCCSSEEEEEEEEECCSS---------------------------SCCCEEEEEEEEEECCCC
T ss_pred             CCcEEEECCccCcccccccCCCEEEEEEEEEeCCC---------------------------CcceeEEEEEEEEEeCCC
Confidence            99999999999999871 11234999999999998                           889999999999999999


Q ss_pred             CCCcccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCeE-EEEEEeCC-Ccc--EEEecccE
Q psy11780        310 ETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGT-FQMFIEGD-MGT--FEITPQKI  372 (383)
Q Consensus       310 n~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~-i~y~l~~~-~~~--F~I~~~tG  372 (383)
                      |+|.|..  |...|+|+.+.|..   +.     |+|+|.+.|+. +.|++.++ ...  |.++..+|
T Consensus       437 n~P~~~~--~~~~v~e~~~~~~~---v~-----A~D~D~~~n~~~~~~~l~~~~~~~~~~~~~~~~g  493 (550)
T 3q2v_A          437 NAPIPEP--RNMQFCQRNPQPHI---IT-----ILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQ  493 (550)
T ss_dssp             CCCEESC--SSCEEESSSCCCEE---EE-----EECCSCTTSSSSCCCEEEECCSSSCEEECCSTTS
T ss_pred             CCCcCcC--cccceeecCCCcEE---EE-----EECCCCCCCCCCEEEEECCCCCCCeEEEEecCCC
Confidence            9999985  57789999987754   66     99999999984 88988544 333  44444334

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=100.00  E-value=1.7e-50  Score=412.05  Aligned_cols=304  Identities=24%  Similarity=0.293  Sum_probs=265.0

Q ss_pred             eeccccccceeeeeEEEEeeeee-------eeeEEEEEeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEc
Q psy11780          3 NLLNAGVNRVKEKHVLLIGTYLL-------LSAILVDSSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGAD   74 (383)
Q Consensus         3 ~~~~~~lD~E~~~~~~l~~~~~~-------~~~~~~i~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D   74 (383)
                      .++.+.||||+++.|.|+|.|.|       +.+.++|.|.|. ||+|+|.   +..|.++|+|  + ++|+.|+++.|+|
T Consensus       179 ~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~---~~~y~~~V~E--n-~~gt~v~~v~A~D  252 (546)
T 1l3w_A          179 SLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFD---PKTYTALVPE--N-EIGFEVQRLSVTD  252 (546)
T ss_dssp             EECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBS---CSEEEEEEES--S-SCCCEEEEECBCC
T ss_pred             EEeccCCCcccCceEEEEEEEEECCCCCcceEEEEEEEEeecCCCCCccc---cccceEEEEe--C-CCCCEEEEEEEEe
Confidence            34468999999999999999998       468899999887 8999998   8889999999  8 9999999999999


Q ss_pred             CCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEee--cceEEEEEcccCCCCCCcEEEEEEEEEeC
Q psy11780         75 PDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTV--NGKGVIKLIGKLDYENKFLYQLKILAVDR  152 (383)
Q Consensus        75 ~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~--t~~G~I~~~~~LD~E~~~~~~l~V~a~D~  152 (383)
                      +|.+.                  +.|++++|+|..   +..+.|.|+.+  +.+|.|++.++||||....|.|+|+|+|.
T Consensus       253 ~D~~~------------------g~n~~v~y~i~~---~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~a~D~  311 (546)
T 1l3w_A          253 LDMPG------------------TPAWQAVYKIRV---NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENA  311 (546)
T ss_dssp             CSCTT------------------STTSCEECCBSC---CTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEES
T ss_pred             CCCCC------------------CCCcEEEEEEEe---CCCceEEEEecCCCCeEEEEECccCCcccccEEEEEEEEEEC
Confidence            99421                  346799999953   55789999753  23599999999999999999999999998


Q ss_pred             CCC-CCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCcccEEEeCC
Q psy11780        153 SNN-DRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPN  231 (383)
Q Consensus       153 ~~~-~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~~~~F~Id~~  231 (383)
                      ++. .+.++++++|+|+|.|+|| +|.|....|.+.|+|+.++|+.|+++.|+|+|.|.|+.++|+|.++..++|.|++.
T Consensus       312 ~~~~~~~~s~~~~v~I~V~DvND-~P~f~~~~y~~~V~En~~~g~~v~~v~A~D~D~g~n~~i~ysi~~~~~~~F~Id~~  390 (546)
T 1l3w_A          312 EPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKD  390 (546)
T ss_dssp             SCCSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCCEEETT
T ss_pred             CCCCCCCcceeEEEEEEEEcCCC-CCcEecceEEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEECCCCCCcEEEeCC
Confidence            742 1246789999999999999 99999999999999999999999999999999999999999999877899999999


Q ss_pred             CceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCC
Q psy11780        232 TGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDET  311 (383)
Q Consensus       232 tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~  311 (383)
                      +|.|++.++||||....+...|.|.|.|+|.|.                           |+++++++|+|+|.|+|||+
T Consensus       391 tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~g~---------------------------p~~s~~~~v~I~V~DvNDn~  443 (546)
T 1l3w_A          391 NGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGV---------------------------SVGTGTGTLILHVLDVNDNG  443 (546)
T ss_dssp             TTEEEECSCCCTTSSSCCSSCCEEEEEEEECSS---------------------------SCCCCCEEEECCBCCCCCSC
T ss_pred             cEEEEECCccCCccccCCCCEEEEEEEEEECCC---------------------------CCcEeEEEEEEEEEECCCCc
Confidence            999999999999986211224999999999998                           78899999999999999999


Q ss_pred             CcccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCeE-EEEEEeCC-CccEEEecccE
Q psy11780        312 PTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGT-FQMFIEGD-MGTFEITPQKI  372 (383)
Q Consensus       312 P~f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~-i~y~l~~~-~~~F~I~~~tG  372 (383)
                      |.|.+.  .+.|+|+.++|+ +  +.     |+|+|.|.|+. ++|+|.++ .+.|.| ..+|
T Consensus       444 P~f~~~--~~~v~e~~~~g~-v--v~-----A~D~D~~~n~~~~~y~l~~~~~~~f~i-~~~g  495 (546)
T 1l3w_A          444 PVPSPR--VFTMCDQNPEPQ-V--LT-----ISDADIPPNTYPYKVSLSHGSDLTWKA-ELDS  495 (546)
T ss_dssp             CCBSCC--CEEECSSSCCCE-E--EE-----BCCSSCTTTTCCCCCBCCSCSSSSCBC-CBCT
T ss_pred             CCccCc--eEEEecCCCCCe-E--EE-----EEeCCCCCCCccEEEEECCCCCCCEEE-eccC
Confidence            999854  688999999997 3  66     99999999997 89999654 568988 4444

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=100.00  E-value=7.6e-49  Score=418.25  Aligned_cols=301  Identities=24%  Similarity=0.304  Sum_probs=264.2

Q ss_pred             eeeccccccceeeeeEEEEeeeee-------eeeEEEEEeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEE
Q psy11780          2 INLLNAGVNRVKEKHVLLIGTYLL-------LSAILVDSSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGA   73 (383)
Q Consensus         2 ~~~~~~~lD~E~~~~~~l~~~~~~-------~~~~~~i~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~   73 (383)
                      |.++++.||||+++.|.|+|.|.|       +.+.++|.|.|. ||+|+|.   +..|.++|+|  + ++|+.|+++.|+
T Consensus       327 I~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~---~~~y~~~V~E--n-~~gt~V~~v~A~  400 (880)
T 1q55_A          327 ISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFD---PKTYTALVPE--N-EIGFEVQRLSVT  400 (880)
T ss_dssp             EEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBS---CSEEEEEEES--S-SCCCEEEEECBC
T ss_pred             EEEecccCCHHHcceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCcc---ccceEEEeec--C-CCCcEEEEEEEE
Confidence            334468999999999999999998       568899999887 8999998   8889999999  8 999999999999


Q ss_pred             cCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEee--cceEEEEEcccCCCCCCcEEEEEEEEEe
Q psy11780         74 DPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTV--NGKGVIKLIGKLDYENKFLYQLKILAVD  151 (383)
Q Consensus        74 D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~--t~~G~I~~~~~LD~E~~~~~~l~V~a~D  151 (383)
                      |+|.+.                  +.|++++|+|..   +..+.|.|+.+  +++|.|++.++||||....|.|+|+|+|
T Consensus       401 D~D~~~------------------g~n~~v~Ysi~~---~~~~~F~I~~d~~~~~G~i~~~~~LD~E~~~~y~l~V~A~D  459 (880)
T 1q55_A          401 DLDMPG------------------TPAWQAVYKIRV---NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVEN  459 (880)
T ss_dssp             CCSCTT------------------STTSCEECCBSC---CTTSCEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEE
T ss_pred             CCCCCC------------------CCCceEEEEEec---CCCceEEEEecCCCceEEEecccCCCcccCCcEEEEEEEEE
Confidence            999421                  447799999953   55789999753  3459999999999999999999999999


Q ss_pred             CCCC-CCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCcccEEEeC
Q psy11780        152 RSNN-DRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDP  230 (383)
Q Consensus       152 ~~~~-~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~~~~F~Id~  230 (383)
                      .+.. .+.++++++|+|+|.|+|| +|.|.+..|.+.|+|+.++|+.|+++.|+|+|.+.|+.++|+|.++..++|.|++
T Consensus       460 ~~~~~~~~~sst~tV~I~V~DvND-~P~f~~~~y~~~V~En~~~Gt~V~~v~A~D~D~g~n~~v~Ysi~~~~~~~F~Id~  538 (880)
T 1q55_A          460 AEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNK  538 (880)
T ss_dssp             SSCCSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCCEEET
T ss_pred             CCCCCCCCcceeEEEEEEEEeCCC-CCEEecCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcEEEEECCCCCCCEEEeC
Confidence            8742 1246789999999999999 9999999999999999999999999999999999999999999987789999999


Q ss_pred             CCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCC
Q psy11780        231 NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDE  310 (383)
Q Consensus       231 ~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn  310 (383)
                      .+|.|++.++||||....++..|+|.|.|+|.+.                           |+++++++|+|+|.|+|||
T Consensus       539 ~tG~I~~~~~LDrE~~~~~~~~y~l~V~A~D~g~---------------------------p~~sst~tv~I~V~DvNDn  591 (880)
T 1q55_A          539 DNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGV---------------------------SVGTGTGTLILHVLDVNDN  591 (880)
T ss_dssp             TTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSS---------------------------SCCCCCEEEECCBCCCCCS
T ss_pred             CccEEEECCccCcccccCCCCEEEEEEEEEECCC---------------------------CCcEeEEEEEEEEEeCCCC
Confidence            9999999999999986222234999999999998                           7899999999999999999


Q ss_pred             CCcccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCeE-EEEEEeCC-CccEEE
Q psy11780        311 TPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGT-FQMFIEGD-MGTFEI  367 (383)
Q Consensus       311 ~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~-i~y~l~~~-~~~F~I  367 (383)
                      +|+|.+.  ...|+|+.+.|+ +  +.     |+|+|.|.|+. ++|+|.++ .+.|.|
T Consensus       592 ~P~f~~~--~~~v~E~~~~g~-v--v~-----A~D~D~~~n~~~~~ysl~~~~~~~f~i  640 (880)
T 1q55_A          592 GPVPSPR--VFTMCDQNPEPQ-V--LT-----ISDADIPPNTYPYKVSLSHGSDLTWKA  640 (880)
T ss_dssp             CCCBSCC--CEEECSSSCCCE-E--EE-----BCCSSCTTTTCCCCCBCCSCSSSSCBC
T ss_pred             CCCccCc--ceEEecCCCCCe-E--EE-----EecCCCCCCCceEEEEECCCCCCCeEE
Confidence            9999854  688999999997 3  66     99999999997 89999654 567887

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=1.2e-47  Score=365.83  Aligned_cols=259  Identities=32%  Similarity=0.443  Sum_probs=229.5

Q ss_pred             EEEEecCCC--CCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEEE
Q psy11780         52 VIRLKEGPD--TPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVI  129 (383)
Q Consensus        52 ~~~v~E~~~--~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I  129 (383)
                      .+++.|  +  .+.|+.|+++. +|+|.+                     +++++|+|..  +...++|.|++.+  |.|
T Consensus         6 ~~~v~E--~~~~~~~~~v~~va-~D~D~g---------------------~~~i~Y~l~~--~~~~~~F~Id~~t--G~i   57 (322)
T 2a62_A            6 QMFVLE--EFSGPEPILVGRLH-TDLDPG---------------------SKKIKYILSG--DGAGTIFQINDIT--GDI   57 (322)
T ss_dssp             CEECCC--SCCCSSCEECCCCC-CCCCCS---------------------SCCCEEEEEE--TTBTTTEEEETTT--TEE
T ss_pred             eeeecc--ccCCCCCEEEEEEE-EcCCCC---------------------CCEEEEEEEC--CCCCCcEEEeCCc--CEE
Confidence            467788  7  88999999996 899973                     3588999953  3345799999988  999


Q ss_pred             EEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCC-
Q psy11780        130 KLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDR-  208 (383)
Q Consensus       130 ~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~-  208 (383)
                      ++.++||||+...|.|+|+|+|.+++. .+++++.++|.|.|+|||+|.|....|.+.|+|++++|+.|+++.|+|+|. 
T Consensus        58 ~~~~~LDrE~~~~y~l~v~a~D~~~~~-~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~  136 (322)
T 2a62_A           58 HAIKRLDREEKAEYTLTAQAVDFETNK-PLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDP  136 (322)
T ss_dssp             EECSCCCTTTCSBCCEEEEEECTTTCS-EEEEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTTCBCCCCCCCBCSCS
T ss_pred             EEeccCCcccccEEEEEEEEEECCCCC-cccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCC
Confidence            999999999999999999999987532 357789999999999999999999999999999999999999999999996 


Q ss_pred             --CCCceEEEEEecCCcccEEEeCCCceEEEc-ccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecc
Q psy11780        209 --GINNKILYSISSGSQGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTE  285 (383)
Q Consensus       209 --~~n~~i~y~i~~~~~~~F~Id~~tG~i~~~-~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~  285 (383)
                        |.|+.++|+|.++ ..+|.|++.+|.|++. ++||||....    |.|.|.|+|++.                     
T Consensus       137 ~~G~n~~i~Y~i~~~-~~~F~Id~~tG~i~~~~~~LD~E~~~~----y~l~V~a~D~g~---------------------  190 (322)
T 2a62_A          137 VYGNSAKLVYSILEG-QPYFSIEPETAIIKTALPNMDREAKEE----YLVVIQAKDMGG---------------------  190 (322)
T ss_dssp             SSTTSSCEEEEEEEC-TTTEEECTTTCCEEECSSCCCGGGCSE----EEEEEEEEESCS---------------------
T ss_pred             CCCccEEEEEEEccC-CCCEEEecCCCEEEecccCCCcccCCe----EEEEEEEEECCC---------------------
Confidence              7889999999865 5799999999999998 8999999877    999999999997                     


Q ss_pred             cccccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCeEEEEEEeC--CCc
Q psy11780        286 ESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEG--DMG  363 (383)
Q Consensus       286 ~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~i~y~l~~--~~~  363 (383)
                          ..+.+++++.|+|+|.|+|||+|.|.+..|.+.|+|++++|+.|+++.     |+|+|.|.|+.++|+|.+  ..+
T Consensus       191 ----p~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~-----A~D~D~g~n~~i~Y~i~~g~~~~  261 (322)
T 2a62_A          191 ----HSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVK-----ANDQDIGENAQSSYDIIDGDGTA  261 (322)
T ss_dssp             ----SSSCCBCCEEEEEEECCCCCCCCCCSCSEEEEEECSCCSSCCEEEEEE-----CCCSSCGGGTCCEEEEC---CCS
T ss_pred             ----CCCCceeEEEEEEEEEecCCCCCeecCCCceeEeECCCCCCcEEEEEE-----EEeCCCCCCceEEEEEECCCCCC
Confidence                112478999999999999999999999999999999999999999998     999999999999999943  367


Q ss_pred             cEEEe----cccEEE
Q psy11780        364 TFEIT----PQKIIN  374 (383)
Q Consensus       364 ~F~I~----~~tG~~  374 (383)
                      +|.|+    +.+|.-
T Consensus       262 ~F~I~~d~~~~tG~i  276 (322)
T 2a62_A          262 LFEITSDAQAQDGVI  276 (322)
T ss_dssp             SBCCBCCTTTSEEEE
T ss_pred             cEEEeccCCCceEEE
Confidence            99999    356754

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=4.8e-44  Score=340.82  Aligned_cols=245  Identities=22%  Similarity=0.332  Sum_probs=206.5

Q ss_pred             eecccccccee-----eeeEEEEeeeee--------eeeEEEEEeecC-CCCCeEEeCCCee--EEEEEecCCCCCCCeE
Q psy11780          3 NLLNAGVNRVK-----EKHVLLIGTYLL--------LSAILVDSSVSG-NRAPRFIIDEQTE--IVIRLKEGPDTPAGTF   66 (383)
Q Consensus         3 ~~~~~~lD~E~-----~~~~~l~~~~~~--------~~~~~~i~v~~~-Dn~P~F~~~~~~~--~~~~v~E~~~~~~g~~   66 (383)
                      +.+++.||||+     +..|.|+++|.+        +.+.++|.|.|. ||+|+|.   +..  |.+.|+|  ++++|+.
T Consensus        52 l~~~~~LD~E~~~~~~~~~~~l~v~a~d~~~~~~~s~~~~v~I~V~DvNDn~P~F~---~~~~~y~~~v~E--n~~~gt~  126 (316)
T 3ubf_A           52 VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFI---NRPLPMQAVVQL--NAPPNTP  126 (316)
T ss_dssp             EEESSCCCGGGSCTTCEEEEEEEEEC-------CCCEEEEEEEEEECTTCCCCEEC---CSSSSEEEEECT--TCCTTCE
T ss_pred             EEECCccChhhcccccceEEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccC---CCCCCEEEEEeC--CCCCCCE
Confidence            56789999998     578999998876        348888888887 8999998   555  8999999  9999999


Q ss_pred             EEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEEEEEcccCCCCCCcEEEEE
Q psy11780         67 IYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLK  146 (383)
Q Consensus        67 i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~  146 (383)
                      |+++.|+|+|.+.                      .++|+|.  .++..++|.|++.+  |.|+++++||||....|.|.
T Consensus       127 v~~v~A~D~D~g~----------------------ni~Y~i~--~~~~~~~F~Id~~t--G~i~~~~~lD~e~~~~y~l~  180 (316)
T 3ubf_A          127 VFTLQARDPDTDH----------------------NIHYFIV--RDRTGGRFEVDERS--GVVRTRGTDLFQLDMEYVLY  180 (316)
T ss_dssp             EEECCEECSSTTC----------------------CEEEEEE--EEESSSCEEECTTT--CEEEECSSCCCCTTCEEEEE
T ss_pred             EEEEEEECCCCCC----------------------ceEEEEE--eCCCCCEEEEECCc--cEEEECCcCCcccCcEEEEE
Confidence            9999999999854                      3899995  34557899999888  99999999999999999999


Q ss_pred             EEEEeCCCC--CCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEe--cCC
Q psy11780        147 ILAVDRSNN--DRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSIS--SGS  222 (383)
Q Consensus       147 V~a~D~~~~--~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~--~~~  222 (383)
                      |+|+|.+++  .+.+++++.++|.|.| |||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|   ++.++|+|.  +..
T Consensus       181 V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D---n~~i~Y~i~~~~~~  256 (316)
T 3ubf_A          181 VKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQG  256 (316)
T ss_dssp             EEEEESCC-------CBCCCEEEEEEE-SCCCCEESSSSEEEEEETTCCTTCEEEECCEECTT---CCCEEEEEEEESSC
T ss_pred             EEEEeCCCCCCCccccceEEEEEEEEc-CCCCCEEcCCCceEEEeCCCCCCCEEEEEEEEeCC---CCEEEEEEEcCCCC
Confidence            999999863  2246778899999999 99999999999999999999999999999999998   688999996  344


Q ss_pred             cccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEE
Q psy11780        223 QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTI  302 (383)
Q Consensus       223 ~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I  302 (383)
                      .++|.|++.+|.|++.++||||... ....|.|.|.|+|.++                            ++++++.|+|
T Consensus       257 ~~~F~Id~~tG~i~~~~~LD~E~~~-~~~~y~l~V~A~dd~g----------------------------~~~~~~~v~I  307 (316)
T 3ubf_A          257 AGTFNIGPTSGIVKLAKELDFEDLR-QPHVYSLIVTATEDSG----------------------------GFSTSVDLTI  307 (316)
T ss_dssp             TTTEEECTTTCEEEECSCCCSSCTT-SCSEEEEEEEEEESSS----------------------------SCEEEEEEEE
T ss_pred             CCeEEEECCeEEEEECCcCCccccC-CCceEEEEEEEEECCC----------------------------CCEEEEEEEE
Confidence            7899999999999999999999872 0124999999995433                            2789999999


Q ss_pred             EEeecCCCC
Q psy11780        303 IITDVNDET  311 (383)
Q Consensus       303 ~V~DvNDn~  311 (383)
                      +|.|+||||
T Consensus       308 ~V~DvNDn~  316 (316)
T 3ubf_A          308 RVTDVNDNA  316 (316)
T ss_dssp             EEECC----
T ss_pred             EEEecCCCC
Confidence            999999996

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=100.00  E-value=3.1e-44  Score=342.35  Aligned_cols=251  Identities=26%  Similarity=0.331  Sum_probs=215.7

Q ss_pred             eeccccccceeeeeEEEEeeeee--------eeeEEEEEeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEE
Q psy11780          3 NLLNAGVNRVKEKHVLLIGTYLL--------LSAILVDSSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGA   73 (383)
Q Consensus         3 ~~~~~~lD~E~~~~~~l~~~~~~--------~~~~~~i~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~   73 (383)
                      +.+++.||||+++.|.|+|.|.|        +.+.++|.|.|. ||+|+|.   +..|.++|+|  ++++|+.|+++.|+
T Consensus        57 i~~~~~LDrE~~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~---~~~y~~~v~E--~~~~gt~v~~v~A~  131 (322)
T 2a62_A           57 IHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFL---NGPYHATVPE--MSILGTSVTNVTAT  131 (322)
T ss_dssp             EEECSCCCTTTCSBCCEEEEEECTTTCSEEEEEEEECEECCCCSCSCBCCS---SSEEEEEECS--SCCTTCBCCCCCCC
T ss_pred             EEEeccCCcccccEEEEEEEEEECCCCCcccceEEEEEEEEecCCCCCccC---CCceEEEEeC--CCCCCCEEEEEEEE
Confidence            56789999999999999999987        246788888777 9999998   8899999999  99999999999999


Q ss_pred             cCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEEEEEc-ccCCCCCCcEEEEEEEEEeC
Q psy11780         74 DPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLI-GKLDYENKFLYQLKILAVDR  152 (383)
Q Consensus        74 D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I~~~-~~LD~E~~~~~~l~V~a~D~  152 (383)
                      |+|.+.                 .|.|++++|+|..  +  .+.|.|++.+  |.|+++ ++||||....|.|.|+|+|.
T Consensus       132 D~D~~~-----------------~G~n~~i~Y~i~~--~--~~~F~Id~~t--G~i~~~~~~LD~E~~~~y~l~V~a~D~  188 (322)
T 2a62_A          132 DADDPV-----------------YGNSAKLVYSILE--G--QPYFSIEPET--AIIKTALPNMDREAKEEYLVVIQAKDM  188 (322)
T ss_dssp             BCSCSS-----------------STTSSCEEEEEEE--C--TTTEEECTTT--CCEEECSSCCCGGGCSEEEEEEEEEES
T ss_pred             eCCCCC-----------------CCccEEEEEEEcc--C--CCCEEEecCC--CEEEecccCCCcccCCeEEEEEEEEEC
Confidence            999621                 1346789999953  3  4699999988  999998 99999999999999999999


Q ss_pred             CCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-cccEEEe--
Q psy11780        153 SNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDID--  229 (383)
Q Consensus       153 ~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~-~~~F~Id--  229 (383)
                      |+|...+++++.|+|+|.|+|||+|.|.+..|.+.|+|+.++|+.|++|.|+|+|.|.|+.++|+|..+. .++|.|+  
T Consensus       189 g~p~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n~~i~Y~i~~g~~~~~F~I~~d  268 (322)
T 2a62_A          189 GGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSD  268 (322)
T ss_dssp             CSSSSCCBCCEEEEEEECCCCCCCCCCSCSEEEEEECSCCSSCCEEEEEECCCSSCGGGTCCEEEEC---CCSSBCCBCC
T ss_pred             CCCCCCceeEEEEEEEEEecCCCCCeecCCCceeEeECCCCCCcEEEEEEEEeCCCCCCceEEEEEECCCCCCcEEEecc
Confidence            9864457889999999999999999999999999999999999999999999999999999999997654 6899998  


Q ss_pred             --CCCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEe
Q psy11780        230 --PNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIIT  305 (383)
Q Consensus       230 --~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~  305 (383)
                        +.+|.|++.++||||....    |.|+|+|+|.+.   |++...                 ..+++++++|.|+|.
T Consensus       269 ~~~~tG~i~~~~~LD~E~~~~----y~l~V~A~D~g~---pp~~~~-----------------~~~~s~~~~V~I~V~  322 (322)
T 2a62_A          269 AQAQDGVIRLRKPLDFETKKS----YTLKVEAANIHI---DPRFSS-----------------RGPFKDTATVKIVVE  322 (322)
T ss_dssp             TTTSEEEEEBCSCCCCSSCCE----EEEEEEEECCCS---SCTTSS-----------------CCCCCCCCEEEEEEC
T ss_pred             CCCceEEEEECCcCCcccCCe----EEEEEEEEECCC---CCcccc-----------------CCCcccEEEEEEEEC
Confidence              4589999999999999876    999999999986   111100                 124678888888874

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=100.00  E-value=1.2e-42  Score=331.10  Aligned_cols=228  Identities=25%  Similarity=0.396  Sum_probs=191.1

Q ss_pred             EEEEEEeeeCCCCCCcEEEEeecceEEEEEcccCCCCCC-----cEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCC
Q psy11780        102 KVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENK-----FLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQP  176 (383)
Q Consensus       102 ~v~y~i~~~~~~~~~~F~I~~~t~~G~I~~~~~LD~E~~-----~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~  176 (383)
                      .+.|+|.  .  ..++|.|++ +  |.|+++++||||..     ..|.|.|+|.|++.+. .+++++.|+|.|.|+|||+
T Consensus        32 ~~~f~i~--~--~~~~F~i~~-t--G~l~~~~~LD~E~~~~~~~~~~~l~v~a~d~~~~~-~~s~~~~v~I~V~DvNDn~  103 (316)
T 3ubf_A           32 KETFKIR--D--DNPWVTVET-N--GAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGI-KYTDNQRVIILVKDVNDEP  103 (316)
T ss_dssp             TCEEEES--S--CCSSEEECT-T--SEEEESSCCCGGGSCTTCEEEEEEEEEC--------CCCEEEEEEEEEECTTCCC
T ss_pred             cceEEEe--C--CCCeEEECC-C--eEEEECCccChhhcccccceEEEEEEEEcCCCCCC-cccceEEEEEEEEECCCCC
Confidence            3456663  1  236899998 6  99999999999984     5788999999987542 3578999999999999999


Q ss_pred             CeEecCc--cEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecC-CcccEEEeCCCceEEEcccCCcccccCCCceE
Q psy11780        177 PEFVAVS--SVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-SQGIFDIDPNTGNIFTLKELDRESATSNNGAY  253 (383)
Q Consensus       177 P~f~~~~--~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~-~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y  253 (383)
                      |.|....  |.+.|+|++++|+.|+++.|+|+|.+.|  ++|+|..+ ..++|.|++.+|.|++.++||||....    |
T Consensus       104 P~F~~~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n--i~Y~i~~~~~~~~F~Id~~tG~i~~~~~lD~e~~~~----y  177 (316)
T 3ubf_A          104 PYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDME----Y  177 (316)
T ss_dssp             CEECCSSSSEEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEEEESSSCEEECTTTCEEEECSSCCCCTTCE----E
T ss_pred             CccCCCCCCEEEEEeCCCCCCCEEEEEEEECCCCCCc--eEEEEEeCCCCCEEEEECCccEEEECCcCCcccCcE----E
Confidence            9999887  8999999999999999999999999866  99999854 478999999999999999999999877    9


Q ss_pred             EEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCCCCCCcce
Q psy11780        254 ILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPV  333 (383)
Q Consensus       254 ~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~g~~v  333 (383)
                      .|.|.|+|+++..                       ..+.+++++.|+|.|.| |||+|.|.++.|.+.|+|++++|+.|
T Consensus       178 ~l~V~A~D~g~~~-----------------------~~~~~~~~~~v~I~V~d-nDn~P~F~~~~y~~~v~En~~~gt~v  233 (316)
T 3ubf_A          178 VLYVKAEDQNGKV-----------------------DDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDI  233 (316)
T ss_dssp             EEEEEEEESCC------------------------------CBCCCEEEEEEE-SCCCCEESSSSEEEEEETTCCTTCEE
T ss_pred             EEEEEEEeCCCCC-----------------------CCccccceEEEEEEEEc-CCCCCEEcCCCceEEEeCCCCCCCEE
Confidence            9999999998510                       01457888999999999 99999999999999999999999999


Q ss_pred             EEeecccceEEeCCCCCCeEEEEEEe--C-CCccEEEecccEEEE
Q psy11780        334 TFLGGVVPQVFDYDQGKNGTFQMFIE--G-DMGTFEITPQKIINE  375 (383)
Q Consensus       334 ~~v~~~~~~a~D~D~g~n~~i~y~l~--~-~~~~F~I~~~tG~~~  375 (383)
                      +++.     |+|+|   |+.++|+|.  + ..++|.|++.+|.-.
T Consensus       234 ~~v~-----A~D~D---n~~i~Y~i~~~~~~~~~F~Id~~tG~i~  270 (316)
T 3ubf_A          234 ISIK-----AKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVK  270 (316)
T ss_dssp             EECC-----EECTT---CCCEEEEEEEESSCTTTEEECTTTCEEE
T ss_pred             EEEE-----EEeCC---CCEEEEEEEcCCCCCCeEEEECCeEEEE
Confidence            9998     99998   678999995  3 368999999999753

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=100.00  E-value=1.3e-42  Score=311.83  Aligned_cols=207  Identities=30%  Similarity=0.475  Sum_probs=187.5

Q ss_pred             CCCCCeEEeCCCeeEE--EEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCC
Q psy11780         37 GNRAPRFIIDEQTEIV--IRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDE  114 (383)
Q Consensus        37 ~Dn~P~F~~~~~~~~~--~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~  114 (383)
                      +||+|+|.   +..|.  ++|+|  ++++|+.|+++.|+|+|.+.                       ++|+|..  ++.
T Consensus         2 vn~~P~F~---~~~y~~~~~V~E--~~~~Gt~v~~v~A~D~D~~~-----------------------~~y~i~~--~~~   51 (210)
T 3mvs_A            2 VNRLPFFT---NHFFDTYLLISE--DTPVGSSVTQLLARDMDNDP-----------------------LVFGVSG--EEA   51 (210)
T ss_dssp             CCCCCEEC---CGGGTSCEEEET--TCCTTCEEEECCEECTTCCC-----------------------CEEEEES--HHH
T ss_pred             CCCCCccC---CCccceEEEEeC--CCCCCCEEEEEEEEeCCCCc-----------------------EEEEEeC--CCC
Confidence            58999998   77775  78999  99999999999999999854                       5566632  333


Q ss_pred             CCcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCC
Q psy11780        115 KDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPV  194 (383)
Q Consensus       115 ~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~  194 (383)
                      .++|.|++.+  |.|+++++||||+...|.|.|.|+|.++     ..++.|+|+|.|+|||+|.|.+..|.+.|+|+.++
T Consensus        52 ~~~F~Id~~t--G~i~~~~~LD~E~~~~y~l~v~a~D~~~-----~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~  124 (210)
T 3mvs_A           52 SRFFAVEPDT--GVVWLRQPLDRETKSEFTVEFSVSDHQG-----VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPV  124 (210)
T ss_dssp             HHHEEECTTT--CEEEESSCCCTTTCCEEEEEEEEECSSC-----EEEEEEEEEEECCCCCCCEECSCSEEEEEETTCCT
T ss_pred             CCcEEEeCCC--CEEEECCccCCcccceEEEEEEEEeCCC-----CEEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCC
Confidence            5789999988  9999999999999999999999999865     35789999999999999999999999999999999


Q ss_pred             CcEEEEEEEEeCCCCCCceEEEEEecCCcccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCce
Q psy11780        195 GTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKT  274 (383)
Q Consensus       195 gt~v~~v~A~D~D~~~n~~i~y~i~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~  274 (383)
                      |+.|+++.|+|+|.|.|+.++|+|..+ .++|.|++.+|.|++.++||||....    |.|.|.|+|+++          
T Consensus       125 gt~v~~v~A~D~D~g~n~~v~Y~i~~~-~~~F~Id~~tG~i~~~~~LD~E~~~~----y~l~V~a~D~g~----------  189 (210)
T 3mvs_A          125 GTPIFIVNATDPDLGAGGSVLYSFQPP-SPFFAIDSARGIVTVIQELDYEVTQA----YQLTVNATDQDK----------  189 (210)
T ss_dssp             TCEEEECCEECCSSGGGGCEEEEESSC-CSSEEECTTTCEEEECSCCCTTTCSE----EEEEEEEEECCS----------
T ss_pred             CCEEEEEEEEeCCCCCCceEEEEEeCC-CCCEEEeCCcEEEEECCcCCCcccce----EEEEEEEEECCC----------
Confidence            999999999999999999999999854 68999999999999999999999877    999999999985          


Q ss_pred             eEEEEEeeecccccccCCCCceEEEEEEEEeecCCCC
Q psy11780        275 EVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDET  311 (383)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~  311 (383)
                                      .+++++++.|+|+|.|+||||
T Consensus       190 ----------------~~~~s~~~~v~I~V~DvND~~  210 (210)
T 3mvs_A          190 ----------------TRPLSTLANLAIIITDMQDMD  210 (210)
T ss_dssp             ----------------SSCCEEEEEEEEEEECCCCCC
T ss_pred             ----------------CCCCEEEEEEEEEEEccCCCC
Confidence                            267899999999999999986

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.9e-44  Score=328.47  Aligned_cols=220  Identities=20%  Similarity=0.169  Sum_probs=186.7

Q ss_pred             eEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCc-eEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEE
Q psy11780         42 RFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDV-LTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSI  120 (383)
Q Consensus        42 ~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~-~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I  120 (383)
                      +|.   +..|.++|+|  ++++|+.|+++.|+|+|.+. ++|.|.+.             .--.|+|..  + ..++|.|
T Consensus         2 ~F~---~~~Y~~~V~E--~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~-------------~~~~y~i~~--~-~~~~F~I   60 (246)
T 2x2u_A            2 YFS---RDAYWEKLYV--DQAAGTPLLYVHALRDAPEEVPSFRLGQH-------------LYGTYRTRL--H-ENNWIRI   60 (246)
T ss_dssp             EES---CSEEEEEEET--TBCTTCEEEECCEECSSTTCCCCCEECSE-------------EECGGGCEE--E-ECCSEEE
T ss_pred             Ccc---CCceEEEeeC--CCCCCCEEEEEEEEcCCCCCcceEEEeec-------------cccceeccC--C-CCCEEEE
Confidence            577   8899999999  99999999999999999853 23332210             000155532  1 3679999


Q ss_pred             EeecceEEEEEcccCCCCCCcEE------------EEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCe----------
Q psy11780        121 STVNGKGVIKLIGKLDYENKFLY------------QLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPE----------  178 (383)
Q Consensus       121 ~~~t~~G~I~~~~~LD~E~~~~~------------~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~----------  178 (383)
                      ++.+  |.|+++++||||....|            .|+|.|+|.+.+...+++++.|+|+|.|+|||+|.          
T Consensus        61 d~~t--G~i~~~~~LDrE~~~~y~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~  138 (246)
T 2x2u_A           61 QEDT--GLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELC  138 (246)
T ss_dssp             CTTT--CEEEESSCBCHHHHHHHHHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHH
T ss_pred             CCCc--EEEEECCcCChhHhhhhccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccccccccccc
Confidence            9988  99999999999999999            99999999987643467789999999999999999          


Q ss_pred             EecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCcccEEEeCCCceEEEcccCCcccccCCCceEEEEEE
Q psy11780        179 FVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIK  258 (383)
Q Consensus       179 f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~  258 (383)
                      |.+..|.+.|+|+.++|+.|+++.|+|+|.|.|+.++|+|.++...+|.|++.+|.|++.++||||....    |.|.|.
T Consensus       139 F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l~V~  214 (246)
T 2x2u_A          139 FPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREK----YELVAV  214 (246)
T ss_dssp             SCSSCCCEEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESCTTSSEECCTTCCEEEESSCBCTTTCSE----EEEEEE
T ss_pred             cCCCcEEEEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccCCCCCEEEECCcCEEEeCCccCccccce----EEEEEE
Confidence            9999999999999999999999999999999999999999987688999999999999999999999877    999999


Q ss_pred             EEeC-CCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCccc
Q psy11780        259 VTEE-SKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFR  315 (383)
Q Consensus       259 a~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~  315 (383)
                      |+|. ++                           |+++++++|.|+|.|+|||+|.|.
T Consensus       215 A~d~dg~---------------------------p~~ss~~~v~I~V~DvNDn~P~F~  245 (246)
T 2x2u_A          215 CTVHAGA---------------------------REEVVMVPFPVTVYDEDDSAPEFE  245 (246)
T ss_dssp             EEEC------------------------------CCEEEEEEEEEEEECSSCCSCCCC
T ss_pred             EEecCCC---------------------------CcceEEEEEEEEEEEeCCCCCccC
Confidence            9994 44                           778999999999999999999996

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=100.00  E-value=2.4e-40  Score=327.02  Aligned_cols=236  Identities=25%  Similarity=0.391  Sum_probs=211.3

Q ss_pred             eeeccccccceeeeeEEEEeeeeee-----------eeEEEEEeecCCCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEE
Q psy11780          2 INLLNAGVNRVKEKHVLLIGTYLLL-----------SAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRL   70 (383)
Q Consensus         2 ~~~~~~~lD~E~~~~~~l~~~~~~~-----------~~~~~i~v~~~Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v   70 (383)
                      ++++++.||||....|.|+|+|.|.           .+.++|.|.+|||+|+|.   +..|.++|+|  ++++|+.|+++
T Consensus       167 ~i~~~~~ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~dndn~P~F~---~~~y~~~v~E--n~~~gt~v~~v  241 (419)
T 3ubh_A          167 VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFY---MPSYEAEIPE--NQKKDSDIISI  241 (419)
T ss_dssp             EEEECSSSCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEESCCCCEES---SSCEEEEEET--TCCTTCEEEEC
T ss_pred             EEEEecccccccccEEEEEEEEEECCCCccCcccccceEEEEEEECCCCCCcee---cCeeEEEecC--CCCCCcEEEEE
Confidence            3567889999999999999999883           356788888899999998   8899999999  99999999999


Q ss_pred             EEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEEEEEcccCCCCCCc---EEEEEE
Q psy11780         71 RGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVIKLIGKLDYENKF---LYQLKI  147 (383)
Q Consensus        71 ~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I~~~~~LD~E~~~---~~~l~V  147 (383)
                      .|+|+|.+                       +++|+|.. .++..++|.|++.+  |.|++.++||||...   .|.|.|
T Consensus       242 ~A~D~dn~-----------------------~i~Ysi~~-~~~~~~~F~I~~~t--G~i~~~~~LD~E~~~~~~~y~l~V  295 (419)
T 3ubh_A          242 KAKSFADR-----------------------EIRYTLKA-QGQGAGTFNIGPTS--GIVKLAKELDFEDLRQPHVYSLIV  295 (419)
T ss_dssp             CEECSSCC-----------------------CCEEEEEE-SSSCCSSEEECTTT--CEEEECSCCCTTCTTSCSEEEEEE
T ss_pred             EEecCCCC-----------------------ceEEEEec-CCCCCCcEEEECCC--CEEEECcccCccccccccEEEEEE
Confidence            99999863                       67888853 45567899999988  999999999999875   799999


Q ss_pred             EEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEE-EEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCcccE
Q psy11780        148 LAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVT-RVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIF  226 (383)
Q Consensus       148 ~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~-~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~~~~F  226 (383)
                      .|+|.++   .+++++.|+|.|.|+|||+|.|....|.. .|+|+.++|+.|+++.|+|+|.|.|+.++|+|.+   ++|
T Consensus       296 ~a~dd~~---~~s~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~---~~F  369 (419)
T 3ubh_A          296 TATEDSG---GFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSD---DHF  369 (419)
T ss_dssp             EEECTTT---SCEEEEEEEEEEECCCCCCCEESSSEEEEEEEETTCCTTCEEEECCEECSSCGGGGCEEEEESC---TTE
T ss_pred             EEEeCCC---CcEEEEEEEEEEEccCCCCCcccCCcceeEEecCCCCCCCEEEEEEEEeCCCCCCCEEEEEEcC---CcE
Confidence            9997554   46889999999999999999999999987 7999999999999999999999999999999964   489


Q ss_pred             EEeCCCceEEEcccCCccc-ccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEe
Q psy11780        227 DIDPNTGNIFTLKELDRES-ATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIIT  305 (383)
Q Consensus       227 ~Id~~tG~i~~~~~lD~E~-~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~  305 (383)
                      .|++ +|.|++.++||||. ...    |.|.|.|+|+|.                           |+++++++|+|+|.
T Consensus       370 ~Id~-~G~i~~~~~ld~E~~~~~----y~l~V~a~D~G~---------------------------p~~sst~~v~I~v~  417 (419)
T 3ubh_A          370 AVDS-NGIIVNNKQLDADNNNAY----YEFIVTAKDKGE---------------------------PPKSGVATVRVYTK  417 (419)
T ss_dssp             EECT-TCEEEECSCSSSSCTTCE----EEEEEEEEECCS---------------------------SCCEEEEEEEEEEE
T ss_pred             EECC-CeEEEECcccCcccCCce----EEEEEEEEECCc---------------------------CCceeEEEEEEEEe
Confidence            9998 89999999999998 344    999999999998                           88999999999998


Q ss_pred             e
Q psy11780        306 D  306 (383)
Q Consensus       306 D  306 (383)
                      |
T Consensus       418 n  418 (419)
T 3ubh_A          418 N  418 (419)
T ss_dssp             C
T ss_pred             c
Confidence            6

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=100.00  E-value=2e-40  Score=298.28  Aligned_cols=205  Identities=33%  Similarity=0.432  Sum_probs=175.5

Q ss_pred             eEEEEEecCCC--CCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceE
Q psy11780         50 EIVIRLKEGPD--TPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKG  127 (383)
Q Consensus        50 ~~~~~v~E~~~--~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G  127 (383)
                      .|.+.|.|  +  .|.|+.|+++ |+|+|.+                     ++.++|+|..  +...+.|.|++.+  |
T Consensus         5 ~~~~~v~E--n~~~p~~~~v~~v-a~D~D~g---------------------n~~i~Y~l~~--~~~~~~F~Id~~t--G   56 (215)
T 2a4e_A            5 WNQFFVIE--EYTGPDPVLVGRL-HSDIDSG---------------------DGNIKYILSG--EGAGTIFVIDDKS--G   56 (215)
T ss_dssp             CCEEEEET--TCCSSSCEEEEEC-CCTTCCS---------------------SSCEEEEEEE--TTBTTTEEECTTT--C
T ss_pred             EeeEEEec--cCCCCCCEEEEEE-EECCCCC---------------------CCeEEEEEEC--CCCCCeEEEECCc--e
Confidence            45778999  6  4689999998 8999983                     3589999953  3335699999988  9


Q ss_pred             EEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCC
Q psy11780        128 VIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD  207 (383)
Q Consensus       128 ~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D  207 (383)
                      .|++.++||||....|.|.|.|+|.+.+. ++++++.|+|+|.|+|||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|
T Consensus        57 ~i~~~~~LDrE~~~~y~l~v~a~D~~~~~-~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v~A~D~D  135 (215)
T 2a4e_A           57 NIHATKTLDREERAQYTLMAQAVDRDTNR-PLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDAD  135 (215)
T ss_dssp             EEEECSCCCTTTCSEEEEEEEEEETTTCC-EEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEECCEECSS
T ss_pred             EEEECCccCCccCCEEEEEEEEEECCCCC-cccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEEEEEECC
Confidence            99999999999999999999999997532 46788999999999999999999999999999999999999999999999


Q ss_pred             C---CCCceEEEEEecCCcccEEEeCCCceEEEc-ccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeee
Q psy11780        208 R---GINNKILYSISSGSQGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDV  283 (383)
Q Consensus       208 ~---~~n~~i~y~i~~~~~~~F~Id~~tG~i~~~-~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~  283 (383)
                      .   |.|+.++|+|.++ ..+|.|++.+|.|+++ ++||||....    |.|.|.|+|++.                   
T Consensus       136 ~~~~G~n~~i~Y~i~~~-~~~F~Id~~tG~I~~~~~~LD~E~~~~----y~l~V~A~D~g~-------------------  191 (215)
T 2a4e_A          136 DPTYGNSAKLVYSILEG-QPYFSVEAQTGIIRTALPNMDREAKEE----YHVVIQAKDMGG-------------------  191 (215)
T ss_dssp             CTTTCSSSCCEEEEEES-TTTEEECTTTCEEEECSSCCCSSSCSE----EEEEEEEETTTT-------------------
T ss_pred             CCCCCCceEEEEEEeCC-CCcEEEeCCccEEEEcccCCCcccCCE----EEEEEEEEECCC-------------------
Confidence            7   8889999999875 5799999999999999 9999999876    999999999987                   


Q ss_pred             cccccccCCCCceEEEEEEEEeecCCCCCc
Q psy11780        284 TEESKTVQPAPTAKTEVTIIITDVNDETPT  313 (383)
Q Consensus       284 ~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~  313 (383)
                            ..++++++++|+|+|.|+|||+|+
T Consensus       192 ------~~~~~s~~~~v~I~V~DvNDn~P~  215 (215)
T 2a4e_A          192 ------HMGGLSGTTKVTITLTDDYKDDDK  215 (215)
T ss_dssp             ------CTTCCEEEEEEEEEEEC-------
T ss_pred             ------CCCCceeEEEEEEEEEECCCCCCC
Confidence                  112589999999999999999995

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=100.00  E-value=8.2e-37  Score=274.73  Aligned_cols=196  Identities=27%  Similarity=0.370  Sum_probs=175.9

Q ss_pred             EEEEEecCCCCC--CCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeC--CCCCCcEEEEeecce
Q psy11780         51 IVIRLKEGPDTP--AGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVD--GDEKDLFSISTVNGK  126 (383)
Q Consensus        51 ~~~~v~E~~~~~--~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~--~~~~~~F~I~~~t~~  126 (383)
                      ..++|+|  +.+  .|+.|+++.| |+|.                      |++++|+|....  +++.++|.|++.+  
T Consensus         5 ~~~~V~E--n~~~~~~~~v~~v~a-D~d~----------------------n~~v~Ysi~~~~~~~~~~~~F~Id~~t--   57 (213)
T 3qrb_A            5 AAISCPE--NEKGEFPKNLVQIKS-NRDK----------------------ETKVFYSITGQGADKPPVGVFIIERET--   57 (213)
T ss_dssp             EEEEEET--TCCSSSSEEEEECCC-GGGG----------------------TSCEEEEEESBTTTBSSTTSEEECTTT--
T ss_pred             CCEEEeC--CCCCCCCcEEEEEEE-CCCC----------------------CceEEEEEEcCCCCCCCCCeEEEECCC--
Confidence            3678999  776  7899999999 8776                      348999996432  3456799999988  


Q ss_pred             EEEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeC
Q psy11780        127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDG  206 (383)
Q Consensus       127 G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~  206 (383)
                      |.|++.++||||....|.|.|.|+|.+++  .+++++.|+|+|.|+|||+|.|.+..|.+.|+|+.++|+.|+++.|+|+
T Consensus        58 G~i~~~~~LDrE~~~~y~l~v~a~D~~~~--~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~  135 (213)
T 3qrb_A           58 GWLKVTQPLDREAIAKYILYSHAVSSNGE--AVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDA  135 (213)
T ss_dssp             CEEEECSCCCTTTCSEEEEEEEEEETTSC--BCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEEECCEECC
T ss_pred             CEEEECCccCcccCceEEEEEEEEeCCCC--cccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEEEEEEEeC
Confidence            99999999999999999999999999876  4677899999999999999999999999999999999999999999999


Q ss_pred             CCC---CCceEEEEEecC-----CcccEEEeCCCceEEEc-ccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEE
Q psy11780        207 DRG---INNKILYSISSG-----SQGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVT  277 (383)
Q Consensus       207 D~~---~n~~i~y~i~~~-----~~~~F~Id~~tG~i~~~-~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~  277 (383)
                      |.+   .|+.++|+|.++     ..++|.|++.+|.|++. ++||||....    |.|.|.|+|.|.             
T Consensus       136 D~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~----y~l~V~A~D~g~-------------  198 (213)
T 3qrb_A          136 DDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT----YTLVVQAADLQG-------------  198 (213)
T ss_dssp             SCTTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCTTTCCE----EEEEEEEETGGG-------------
T ss_pred             CCCCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCCCCCccCce----EEEEEEEEeCCC-------------
Confidence            998   899999999864     25799999999999987 8999999877    999999999998             


Q ss_pred             EEEeeecccccccCCCCceEEEEEEEEee
Q psy11780        278 IIITDVTEESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       278 ~~~~~~~~~~~~~~~~~s~~~~v~I~V~D  306 (383)
                                    |+++++++|+|+|.|
T Consensus       199 --------------~~~s~t~~v~I~V~D  213 (213)
T 3qrb_A          199 --------------EGLSTTAKAVITVKD  213 (213)
T ss_dssp             --------------TSCEEEEEEEEEEEC
T ss_pred             --------------CCceEEEEEEEEEEC
Confidence                          789999999999987

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=100.00  E-value=2.9e-37  Score=277.88  Aligned_cols=197  Identities=29%  Similarity=0.430  Sum_probs=176.6

Q ss_pred             EEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeC--CCCCCcEEEEeecceEEE
Q psy11780         52 VIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVD--GDEKDLFSISTVNGKGVI  129 (383)
Q Consensus        52 ~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~--~~~~~~F~I~~~t~~G~I  129 (383)
                      .++|+|  +++ |+.++++.|.|.|.+                    .|++++|+|....  +++.+.|.|++.+  |.|
T Consensus         6 ~~~V~E--n~~-g~~~~~v~~~~~D~~--------------------~n~~v~Ysi~~~~~~~~~~~~F~Id~~t--G~i   60 (215)
T 2qvi_A            6 PINLPE--NSR-GPFPQELVRIRSDRD--------------------KNLSLRYSVTGPGADQPPTGIFIINPIS--GQL   60 (215)
T ss_dssp             CEEEES--SCC-CCSSEEEEECCCGGG--------------------GTSCEEEEEESTTSSSTTCSSEEECTTT--CEE
T ss_pred             cEEEcC--CCC-CCCCEEEEEEeCCCC--------------------CCceEEEEEECCCCCCCCCCcEEEeCCc--cEE
Confidence            468999  888 888899999888873                    3679999996421  2346899999988  999


Q ss_pred             EEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCC-
Q psy11780        130 KLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDR-  208 (383)
Q Consensus       130 ~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~-  208 (383)
                      +++++||||....|.|+|+|+|.+++  .+++++.|+|+|.|+|||+|.|.+..|.+.|+|++++|+.|+++.|+|+|. 
T Consensus        61 ~~~~~LDrE~~~~y~l~v~a~D~g~~--~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~  138 (215)
T 2qvi_A           61 SVTKPLDRELIARFHLRAHAVDINGN--QVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDP  138 (215)
T ss_dssp             EECSCCCTTTCSEEEEEEEEEETTTC--CCEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEEECCCBCSSCT
T ss_pred             EECcccCcccCCeEEEEEEEEECCCC--ceeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEEEEEEEeCCCC
Confidence            99999999999999999999999886  568899999999999999999999999999999999999999999999998 


Q ss_pred             -CCCceEEEEEecCC-----cccEEEeCCCceEEEc-ccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEe
Q psy11780        209 -GINNKILYSISSGS-----QGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIIT  281 (383)
Q Consensus       209 -~~n~~i~y~i~~~~-----~~~F~Id~~tG~i~~~-~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~  281 (383)
                       +.|+.++|+|.++.     .++|.|++.+|.|++. ++||||....    |.|.|.|+|.++                 
T Consensus       139 ~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~LD~E~~~~----y~l~V~a~D~g~-----------------  197 (215)
T 2qvi_A          139 NALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ----YTLIIQATDMEG-----------------  197 (215)
T ss_dssp             TSTTTCCCCEEEECSSCCSSTTCEEECTTTCEEEECSCCCCTTTCSE----EEEEEECCTTTT-----------------
T ss_pred             CCCCcEEEEEEecCCCCCCcCCeEEEcCCCcEEEEecCCCCcccCCe----EEEEEEEEECCC-----------------
Confidence             78999999998763     5799999999999995 7999999876    999999999987                 


Q ss_pred             eecccccccCC---CCceEEEEEEEEee
Q psy11780        282 DVTEESKTVQP---APTAKTEVTIIITD  306 (383)
Q Consensus       282 ~~~~~~~~~~~---~~s~~~~v~I~V~D  306 (383)
                                +   +++++++|+|+|.|
T Consensus       198 ----------~p~~~ls~t~~v~I~V~D  215 (215)
T 2qvi_A          198 ----------NPTYGLSNTATAVITVTD  215 (215)
T ss_dssp             ----------CTTTSCCCEEEEEEEECC
T ss_pred             ----------CCCCCcceEEEEEEEEEC
Confidence                      4   68999999999987

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=100.00  E-value=4.1e-37  Score=277.64  Aligned_cols=196  Identities=29%  Similarity=0.406  Sum_probs=174.2

Q ss_pred             EEEEecCCCCCCC--eEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEee--eCCCCCCcEEEEeecceE
Q psy11780         52 VIRLKEGPDTPAG--TFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLEN--VDGDEKDLFSISTVNGKG  127 (383)
Q Consensus        52 ~~~v~E~~~~~~g--~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~--~~~~~~~~F~I~~~t~~G  127 (383)
                      .++|+|  +.++|  +.++++.|+|+|.                        .++|+|..  .++++.+.|.|++.+  |
T Consensus         7 ~~~V~E--n~~~g~~~~v~~v~a~D~d~------------------------~i~Y~i~~~~~~~~~~~~F~Id~~t--G   58 (218)
T 3k5r_A            7 PILIPE--NQRQPFPRDVGKVVDSDRPE------------------------GSKFRLTGKGVDQDPKGTFRINENT--G   58 (218)
T ss_dssp             CEEEET--TCCSSCCEEEEECBCTTCCT------------------------TCEEEEEEBTTTBSSTTSEEECTTT--C
T ss_pred             cEEEec--CCCCCCCEEEEEEEecCCCc------------------------eEEEEEEcCCCCCCCCCeEEEeCCc--e
Confidence            578999  99988  8999999999887                        45677753  235667899999988  9


Q ss_pred             EEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCC
Q psy11780        128 VIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD  207 (383)
Q Consensus       128 ~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D  207 (383)
                      .|++.++||||+...|.|+|.|+|.+++  .+++++.|+|+|.|+|||+|.|....|.+.|+|++++|+.|+++.|+|+|
T Consensus        59 ~i~~~~~LDrE~~~~y~l~v~a~D~g~~--~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D  136 (218)
T 3k5r_A           59 SVSVTRTLDRETIATYQLYVETTDASGK--TLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDAD  136 (218)
T ss_dssp             EEEECSCCCTTTCSEEEEEEEEECSSSC--EEEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEEECCCSCSS
T ss_pred             EEEECCcCCcccCCEEEEEEEEEECCCC--ceeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEEEEEEEeCC
Confidence            9999999999999999999999998876  56889999999999999999999999999999999999999999999999


Q ss_pred             C--CCCceEEEEEecCCc-----ccEEEeCCCceEEEc---ccCCccc--ccCCCceEEEEEEEEeCCCCCCCCCCCcee
Q psy11780        208 R--GINNKILYSISSGSQ-----GIFDIDPNTGNIFTL---KELDRES--ATSNNGAYILEIKVTEESKTVQPAPTAKTE  275 (383)
Q Consensus       208 ~--~~n~~i~y~i~~~~~-----~~F~Id~~tG~i~~~---~~lD~E~--~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~  275 (383)
                      .  +.|+.++|+|.++..     ++|.|++.+|.|++.   ++||||.  ...    |.|.|.|+|+++           
T Consensus       137 ~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~LD~E~~~~~~----y~l~V~a~D~gg-----------  201 (218)
T 3k5r_A          137 DPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPK----YELIIEAQDMAG-----------  201 (218)
T ss_dssp             SSCGGGGCEEEEEEEEESCCSCSCSEEECTTTCEEEECSCGGGCCGGGCSCSE----EEEEEEEEECSS-----------
T ss_pred             CCCCCCcEEEEEEecCCCCCCcCCEEEEECCccEEEEeccCCCCCccccCCCe----EEEEEEEEECCC-----------
Confidence            9  789999999987542     679999999999987   6999999  546    999999999993           


Q ss_pred             EEEEEeeecccccccCCCCceEEEEEEEEee
Q psy11780        276 VTIIITDVTEESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~D  306 (383)
                                    ..|+++++++|+|+|.|
T Consensus       202 --------------~~p~~sst~~v~I~V~D  218 (218)
T 3k5r_A          202 --------------LDVGLTGTATATIVIDD  218 (218)
T ss_dssp             --------------TTTTCEEEEEEEEEEEC
T ss_pred             --------------CCCCeeEEEEEEEEEEC
Confidence                          12779999999999987

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=100.00  E-value=9.4e-36  Score=265.69  Aligned_cols=192  Identities=28%  Similarity=0.435  Sum_probs=171.8

Q ss_pred             EEEEecCCCCCCC--eEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEEE
Q psy11780         52 VIRLKEGPDTPAG--TFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVI  129 (383)
Q Consensus        52 ~~~v~E~~~~~~g--~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I  129 (383)
                      .++|+|  +.+.|  ..|+++. +|+|.+.                      . +|+|.  .++..++|.|++.+  |.|
T Consensus         6 ~~~V~E--n~~~~~~~~v~~v~-~D~D~g~----------------------~-~Y~i~--~~~~~~~F~Id~~t--G~i   55 (203)
T 3ppe_A            6 RMHIRE--EIDSPLPHHVGKLT-SSVGNKN----------------------A-MYIIE--GESANTIFKVQGYD--GDI   55 (203)
T ss_dssp             EEEEET--TCCSSSCEEEEECC-BCCCCTT----------------------E-EEEEE--ETTBTTTEEEETTT--TEE
T ss_pred             cEEEEc--cCCCCCCEEEEEEE-ecCCCCC----------------------c-EEEEe--cCCCCCeEEEECCc--CEE
Confidence            578999  88877  8999998 9999864                      3 89995  35556799999998  999


Q ss_pred             EEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCC--
Q psy11780        130 KLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGD--  207 (383)
Q Consensus       130 ~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D--  207 (383)
                      +++++||||....|.|+|.|+|.+.+. .+++++.|+|.|.|+|||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|  
T Consensus        56 ~~~~~LDrE~~~~y~l~v~a~D~g~~~-~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~  134 (203)
T 3ppe_A           56 YAFERLDREKKAEYELTAHIIDRRNNR-SLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDP  134 (203)
T ss_dssp             EESSCCCTTTCCEEEEEEEEEETTTTE-ECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCT
T ss_pred             EECccccccccceEEEEEEEEECCCCC-cccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEEEEEEEcCCCc
Confidence            999999999999999999999998752 35778999999999999999999999999999999999999999999999  


Q ss_pred             -CCCCceEEEEEecCCcccEEEeCCCceEEEc-ccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecc
Q psy11780        208 -RGINNKILYSISSGSQGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTE  285 (383)
Q Consensus       208 -~~~n~~i~y~i~~~~~~~F~Id~~tG~i~~~-~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~  285 (383)
                       .|.|+.++|+|.++ ..+|.|+ .+|.|++. ++||||....    |.|.|.|+|.++                     
T Consensus       135 ~~g~n~~i~Y~i~~~-~~~F~I~-~tG~i~~~~~~LD~E~~~~----y~l~V~A~D~~G---------------------  187 (203)
T 3ppe_A          135 TVAGHATVTYQIIKG-NEYFTVD-DSGVIFTARADLDRESQSA----YEIIVKAKDALG---------------------  187 (203)
T ss_dssp             TSSSTTCEEEEEEES-TTTEEEC-TTSEEEESCSCCCTTTCSE----EEEEEEEEETTC---------------------
T ss_pred             CCCCceEEEEEEeCC-CCcEEEe-CCeEEEECCcCCCcccCCE----EEEEEEEEeCCC---------------------
Confidence             47899999999975 4699999 99999999 9999999877    999999999844                     


Q ss_pred             cccccCCCCceEEEEEEEEee
Q psy11780        286 ESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       286 ~~~~~~~~~s~~~~v~I~V~D  306 (383)
                           .|+++++++|+|+|.|
T Consensus       188 -----~p~~s~t~~v~I~V~D  203 (203)
T 3ppe_A          188 -----LTGESSTATVIIRLTD  203 (203)
T ss_dssp             -----CCCSSSEEEEEEEEEC
T ss_pred             -----CCCCeEEEEEEEEEEC
Confidence                 1668999999999987

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=100.00  E-value=1.7e-36  Score=271.50  Aligned_cols=196  Identities=31%  Similarity=0.418  Sum_probs=165.5

Q ss_pred             EEEEecCCCCC--CCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEEE
Q psy11780         52 VIRLKEGPDTP--AGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGVI  129 (383)
Q Consensus        52 ~~~v~E~~~~~--~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~I  129 (383)
                      .++|.|  +.+  .++.++++ |+|+|.+                     +++++|+|.  .++..++|.|++.+  |.|
T Consensus         6 ~~~v~E--n~~~~~~~~v~~~-a~D~D~g---------------------~~~i~Y~l~--~~~~~~~F~Id~~t--G~i   57 (207)
T 3lnd_A            6 QFFLLE--EYTGSDYQYVGKL-HSDQDRG---------------------DGSLKYILS--GDGAGDLFIINENT--GDI   57 (207)
T ss_dssp             CEEEES--CBCSSSCEEEEEC-CCTTCCS---------------------STTBCCCCC--SSSBTTTEEECTTT--CEE
T ss_pred             ccEEEe--ecCCCCCEEEEEE-EeCCCCC---------------------CceEEEEEE--CCCCCCeEEEECCc--eEE
Confidence            357889  766  44688888 8999973                     347889984  33445699999988  999


Q ss_pred             EEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCC-
Q psy11780        130 KLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDR-  208 (383)
Q Consensus       130 ~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~-  208 (383)
                      ++.++||||....|.|.|.|+|.+.+. .+++++.|+|+|.|+|||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|. 
T Consensus        58 ~~~~~LDrE~~~~y~l~v~a~D~~~~~-~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~  136 (207)
T 3lnd_A           58 QATKRLDREEKPVYILRAQAVNRRTGR-PVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDP  136 (207)
T ss_dssp             EECSCCCGGGCCEEEC----CBSSSCC-CCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEEECCEECSSCT
T ss_pred             EECCCcCcccCCEEEEEEEEEECCCCC-ccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCC
Confidence            999999999999999999999987422 467788999999999999999999999999999999999999999999998 


Q ss_pred             --CCCceEEEEEecCCcccEEEeCCCceEEEc-ccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecc
Q psy11780        209 --GINNKILYSISSGSQGIFDIDPNTGNIFTL-KELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTE  285 (383)
Q Consensus       209 --~~n~~i~y~i~~~~~~~F~Id~~tG~i~~~-~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~  285 (383)
                        |.|+.++|+|.++ ..+|.|++.+|.|++. ++||||....    |.|.|.|+|++.                     
T Consensus       137 ~~g~n~~i~Y~i~~~-~~~F~Id~~tG~i~~~~~~lD~E~~~~----y~l~V~A~D~g~---------------------  190 (207)
T 3lnd_A          137 TYGNSAKVVYSILQG-QPYFSVESETGIIKTALLNMDRENREQ----YQVVIQAKDMGG---------------------  190 (207)
T ss_dssp             TSSSTTCCEEEEEES-GGGEEECTTTCEEEECCSSCCC--CCE----EEEEEEEESGGG---------------------
T ss_pred             CCCCCcEEEEEEcCC-CCCEEEcCCCcEEEECcccCCcccCCE----EEEEEEEEECCC---------------------
Confidence              8899999999865 5699999999999999 9999999877    999999999987                     


Q ss_pred             cccccCCCCceEEEEEEEEee
Q psy11780        286 ESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       286 ~~~~~~~~~s~~~~v~I~V~D  306 (383)
                          ..++++++++|+|+|.|
T Consensus       191 ----~~~~~s~t~~v~I~V~D  207 (207)
T 3lnd_A          191 ----QMGGLSGTTTVNITLTD  207 (207)
T ss_dssp             ----CTTCBEEEEEEEEEEEC
T ss_pred             ----CCCCcEeEEEEEEEEeC
Confidence                11268999999999987

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.98  E-value=7.6e-32  Score=246.19  Aligned_cols=204  Identities=22%  Similarity=0.281  Sum_probs=163.4

Q ss_pred             eeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEE
Q psy11780         49 TEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGV  128 (383)
Q Consensus        49 ~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~  128 (383)
                      +.|.++|+|  ++++|+.++.+.+.|.+..                   +.++.+.|+|..   ....+|.|++.+  |.
T Consensus        20 P~~~vsV~E--~sp~GTvv~~~~~~~~~d~-------------------~~n~~i~ysl~~---~~~~~f~id~~t--g~   73 (242)
T 4apx_B           20 PATIVAIDE--ESRNGTILVDNMLIKGTAG-------------------GPDPTIELSLKD---NVDYWVLLDPVK--QM   73 (242)
T ss_dssp             SSEEEEEET--TCCTTCEEESCCCBSSCBS-------------------SSSCSEEEEEES---CGGGCEEEETTT--TE
T ss_pred             CeEEEEeeC--CCCCCCEEEEEEEecCCCC-------------------CCCCEEEEEEec---CCCceEEECCCC--CE
Confidence            346788999  9999999987666654432                   346689999953   345789999988  77


Q ss_pred             EEEc---ccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEE-----
Q psy11780        129 IKLI---GKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQ-----  200 (383)
Q Consensus       129 I~~~---~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~-----  200 (383)
                      +.+.   +.||||....|.+.+.+.+.+.+.......+.|+|.|.|+|||+|.|.+..|.+.|+|++++|+.|++     
T Consensus        74 ~~l~~t~~~LDrE~~~~~~~~~~~v~~~~~~~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~  153 (242)
T 4apx_B           74 LFLNSTGRVLDRDPPMNIHSIVVQVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGD  153 (242)
T ss_dssp             EEECCTTSCCCCSTTTCCCEEEEEEEEEETTTCCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTT
T ss_pred             EEEEecCCceeccCCCceEEEEEEEEeECCCCCeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeeecc
Confidence            7764   67999998766655555543332224566788999999999999999999999999999999999976     


Q ss_pred             EEEEeCCCCCCceEEEEEecCC-----cccEEEeC-CCceEEEcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCce
Q psy11780        201 VKAVDGDRGINNKILYSISSGS-----QGIFDIDP-NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKT  274 (383)
Q Consensus       201 v~A~D~D~~~n~~i~y~i~~~~-----~~~F~Id~-~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~  274 (383)
                      +.|+|+|.|.|+.|+|+|..+.     ...|.|++ .+|.|+++++||||....    |.|.|+|+|+|...        
T Consensus       154 v~A~D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~----y~l~V~A~D~G~~~--------  221 (242)
T 4apx_B          154 NGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTR----YYVIIQANDRAQNL--------  221 (242)
T ss_dssp             TSEECCSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSCCCTTTCCE----EEEEEEEEECCSSG--------
T ss_pred             cccccCCCCcCCceEEEEecCCCCcccccceEEcCCCceEEEECCcCChhhCCE----EEEEEEEEECCcCc--------
Confidence            7899999999999999998754     35799995 599999999999999877    99999999999710        


Q ss_pred             eEEEEEeeecccccccCCCCceEEEEEEEEee
Q psy11780        275 EVTIIITDVTEESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~D  306 (383)
                                      ...+++.+.|+|+|+-
T Consensus       222 ----------------~~~~~~~~~vtVnVe~  237 (242)
T 4apx_B          222 ----------------NERRTTTTTLTVDLEH  237 (242)
T ss_dssp             ----------------GGCCEEEEEEEEEEEC
T ss_pred             ----------------hhcccCCceEEEEEee
Confidence                            0136778888888863

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=99.97  E-value=1.8e-31  Score=239.23  Aligned_cols=160  Identities=29%  Similarity=0.480  Sum_probs=148.0

Q ss_pred             CCCCeEecCccE--EEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-cccEEEeCCCceEEEcccCCcccccCCC
Q psy11780        174 DQPPEFVAVSSV--TRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESATSNN  250 (383)
Q Consensus       174 Dn~P~f~~~~~~--~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~-~~~F~Id~~tG~i~~~~~lD~E~~~~~~  250 (383)
                      |++|.|....|.  +.|+|++++|+.|+++.|+|+|.   +.++|+|.++. .++|.|++.+|.|++.++||||....  
T Consensus         3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~---~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LD~E~~~~--   77 (210)
T 3mvs_A            3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDN---DPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSE--   77 (210)
T ss_dssp             CCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTC---CCCEEEEESHHHHHHEEECTTTCEEEESSCCCTTTCCE--
T ss_pred             CCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCC---CcEEEEEeCCCCCCcEEEeCCCCEEEECCccCCcccce--
Confidence            489999999997  79999999999999999999995   56899998654 67899999999999999999999877  


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCCCCCC
Q psy11780        251 GAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVIN  330 (383)
Q Consensus       251 ~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~g  330 (383)
                        |.|.|.|+|+++                              ..++.|.|+|.|+|||+|.|.+..|.+.|+|++++|
T Consensus        78 --y~l~v~a~D~~~------------------------------~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~g  125 (210)
T 3mvs_A           78 --FTVEFSVSDHQG------------------------------VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVG  125 (210)
T ss_dssp             --EEEEEEEECSSC------------------------------EEEEEEEEEEECCCCCCCEECSCSEEEEEETTCCTT
T ss_pred             --EEEEEEEEeCCC------------------------------CEEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCCC
Confidence              999999999876                              357899999999999999999999999999999999


Q ss_pred             cceEEeecccceEEeCCCCCCeEEEEEEeCCCccEEEecccEEEE
Q psy11780        331 TPVTFLGGVVPQVFDYDQGKNGTFQMFIEGDMGTFEITPQKIINE  375 (383)
Q Consensus       331 ~~v~~v~~~~~~a~D~D~g~n~~i~y~l~~~~~~F~I~~~tG~~~  375 (383)
                      +.++++.     |+|+|.|.|+.++|+|.+..++|.|++.+|.-.
T Consensus       126 t~v~~v~-----A~D~D~g~n~~v~Y~i~~~~~~F~Id~~tG~i~  165 (210)
T 3mvs_A          126 TPIFIVN-----ATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVT  165 (210)
T ss_dssp             CEEEECC-----EECCSSGGGGCEEEEESSCCSSEEECTTTCEEE
T ss_pred             CEEEEEE-----EEeCCCCCCceEEEEEeCCCCCEEEeCCcEEEE
Confidence            9999998     999999999999999988888999999999754

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=99.96  E-value=4.7e-29  Score=224.09  Aligned_cols=155  Identities=28%  Similarity=0.361  Sum_probs=140.6

Q ss_pred             cEEEEcCCC--CCCcEEEEEEEEeCCCCCCceEEEEEecCC-cccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEE
Q psy11780        184 SVTRVSEDV--PVGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVT  260 (383)
Q Consensus       184 ~~~~v~E~~--~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~-~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~  260 (383)
                      |.+.|.|+.  |.|+.|+++ |+|+|.| ++.++|+|.++. ..+|.|++.+|.|++.++||||....    |.|.|.|+
T Consensus         6 ~~~~v~En~~~p~~~~v~~v-a~D~D~g-n~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l~v~a~   79 (215)
T 2a4e_A            6 NQFFVIEEYTGPDPVLVGRL-HSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQ----YTLMAQAV   79 (215)
T ss_dssp             CEEEEETTCCSSSCEEEEEC-CCTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSE----EEEEEEEE
T ss_pred             eeEEEeccCCCCCCEEEEEE-EECCCCC-CCeEEEEEECCCCCCeEEEECCceEEEECCccCCccCCE----EEEEEEEE
Confidence            577899994  578999988 8999998 889999998765 46999999999999999999999987    99999999


Q ss_pred             eCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCCCCCCcceEEeeccc
Q psy11780        261 EESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVV  340 (383)
Q Consensus       261 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~  340 (383)
                      |++.                          .+++++.+.|.|+|.|+|||+|.|.++.|.+.|+|++++|+.|+++.   
T Consensus        80 D~~~--------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v~---  130 (215)
T 2a4e_A           80 DRDT--------------------------NRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVT---  130 (215)
T ss_dssp             ETTT--------------------------CCEEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEECC---
T ss_pred             ECCC--------------------------CCcccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEEE---
Confidence            9975                          14578889999999999999999999999999999999999999998   


Q ss_pred             ceEEeCCC---CCCeEEEEEEeCCCccEEEecccEEEE
Q psy11780        341 PQVFDYDQ---GKNGTFQMFIEGDMGTFEITPQKIINE  375 (383)
Q Consensus       341 ~~a~D~D~---g~n~~i~y~l~~~~~~F~I~~~tG~~~  375 (383)
                        |+|+|.   |.|+.++|+|.++..+|.|++.||...
T Consensus       131 --A~D~D~~~~G~n~~i~Y~i~~~~~~F~Id~~tG~I~  166 (215)
T 2a4e_A          131 --ASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIR  166 (215)
T ss_dssp             --EECSSCTTTCSSSCCEEEEEESTTTEEECTTTCEEE
T ss_pred             --EEECCCCCCCCceEEEEEEeCCCCcEEEeCCccEEE
Confidence              999997   889999999987778999999999754

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=99.96  E-value=4.4e-29  Score=224.37  Aligned_cols=154  Identities=23%  Similarity=0.309  Sum_probs=141.4

Q ss_pred             EEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-----cccEEEeCCCceEEEcccCCcccccCCCceEEEEEEE
Q psy11780        185 VTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-----QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKV  259 (383)
Q Consensus       185 ~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~-----~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a  259 (383)
                      .++|+|+++ |+.++++.|.|.|.+.|+.++|+|.++.     .++|.|++.+|.|++.++||||....    |.|+|.|
T Consensus         6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l~v~a   80 (215)
T 2qvi_A            6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIAR----FHLRAHA   80 (215)
T ss_dssp             CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSCCCTTTCSE----EEEEEEE
T ss_pred             cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcccCcccCCe----EEEEEEE
Confidence            568999998 8888999999999988999999999753     57999999999999999999999877    9999999


Q ss_pred             EeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCCCCCCcceEEeecc
Q psy11780        260 TEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGV  339 (383)
Q Consensus       260 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~~~  339 (383)
                      +|.++                           +++++++.|.|+|.|+|||+|.|.+..|.+.|+|++++|+.|+++.  
T Consensus        81 ~D~g~---------------------------~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~--  131 (215)
T 2qvi_A           81 VDING---------------------------NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVT--  131 (215)
T ss_dssp             EETTT---------------------------CCCEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEEECC--
T ss_pred             EECCC---------------------------CceeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEEEEE--
Confidence            99998                           7789999999999999999999999999999999999999999998  


Q ss_pred             cceEEeCCC--CCCeEEEEEEeCC------CccEEEecccEEEE
Q psy11780        340 VPQVFDYDQ--GKNGTFQMFIEGD------MGTFEITPQKIINE  375 (383)
Q Consensus       340 ~~~a~D~D~--g~n~~i~y~l~~~------~~~F~I~~~tG~~~  375 (383)
                         |+|+|.  |.|++++|+|.+.      .++|.|++.||...
T Consensus       132 ---A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~  172 (215)
T 2qvi_A          132 ---AIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDII  172 (215)
T ss_dssp             ---CBCSSCTTSTTTCCCCEEEECSSCCSSTTCEEECTTTCEEE
T ss_pred             ---EEeCCCCCCCCcEEEEEEecCCCCCCcCCeEEEcCCCcEEE
Confidence               999999  7899999999543      47999999998753

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.2e-30  Score=239.41  Aligned_cols=162  Identities=17%  Similarity=0.099  Sum_probs=142.0

Q ss_pred             eEecCccEEEEcCCCCCCcEEEEEEEEeCCCCC--CceEE------EEEecCCcccEEEeCCCceEEEcccCCcccccCC
Q psy11780        178 EFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGI--NNKIL------YSISSGSQGIFDIDPNTGNIFTLKELDRESATSN  249 (383)
Q Consensus       178 ~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~--n~~i~------y~i~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~  249 (383)
                      .|.+..|.++|+|++++|+.|++|.|+|+|.+.  +..+.      |++..+...+|.|++.+|.|++.++||||.... 
T Consensus         2 ~F~~~~Y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~-   80 (246)
T 2x2u_A            2 YFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEK-   80 (246)
T ss_dssp             EESCSEEEEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEECGGGCEEEECCSEEECTTTCEEEESSCBCHHHHHH-
T ss_pred             CccCCceEEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeeccccceeccCCCCCEEEECCCcEEEEECCcCChhHhhh-
Confidence            588999999999999999999999999999853  44554      555544568999999999999999999999877 


Q ss_pred             CceE------------EEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCC--CCceEEEEEEEEeecCCCCCc--
Q psy11780        250 NGAY------------ILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQP--APTAKTEVTIIITDVNDETPT--  313 (383)
Q Consensus       250 ~~~y------------~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~v~I~V~DvNDn~P~--  313 (383)
                         |            .|+|.|+|.+.                           +  .+++++.|.|+|.|+|||+|+  
T Consensus        81 ---y~~~~~G~p~~~~~l~V~a~D~g~---------------------------~~~~~~~~~~v~I~V~DvNDn~P~~~  130 (246)
T 2x2u_A           81 ---LSVRNRGFPLLTVYLKVFLSPTSL---------------------------REGECQWPGCARVYFSFFNTSFPACS  130 (246)
T ss_dssp             ---HHHTSTTSCCCEEEEEEECC----------------------------------CCCTTTEEEEEEEEESSCCCCGG
T ss_pred             ---hccccCCCcccceEEEEEEEcCCC---------------------------CCCcccceEEEEEEEEECCCCCCccc
Confidence               8            99999999987                           3  578889999999999999999  


Q ss_pred             --------ccCCceEEEEeCCCCCCcceEEeecccceEEeCCCCCCeEEEEEEeCC-CccEEEecccEEEE
Q psy11780        314 --------FRSPRYVAEIHENSVINTPVTFLGGVVPQVFDYDQGKNGTFQMFIEGD-MGTFEITPQKIINE  375 (383)
Q Consensus       314 --------f~~~~y~~~V~E~~~~g~~v~~v~~~~~~a~D~D~g~n~~i~y~l~~~-~~~F~I~~~tG~~~  375 (383)
                              |.+..|.+.|+|++++|+.|+++.     |+|+|.|.|++++|+|.++ .++|.|++.||.-.
T Consensus       131 ~~~~~~~~F~~~~y~~~v~En~~~Gt~v~~v~-----A~D~D~g~n~~i~Y~i~~~~~~~F~Id~~tG~i~  196 (246)
T 2x2u_A          131 SLKPRELCFPETRPSFRIRENRPPGTFHQFRL-----LPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVS  196 (246)
T ss_dssp             GCCHHHHHSCSSCCCEEEEBTSCCCEEEECSC-----HHHHHHCTTSCEEEEEESCTTSSEECCTTCCEEE
T ss_pred             cccccccccCCCcEEEEEECCCCCCcEEEEEE-----EEcCCCCCCcEEEEEEccCCCCCEEEECCcCEEE
Confidence                    999999999999999999999998     9999999999999999766 68999999999654

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=99.95  E-value=8.9e-29  Score=221.24  Aligned_cols=154  Identities=27%  Similarity=0.351  Sum_probs=135.0

Q ss_pred             EEEEcCCCCCC--cEEEEEEEEeCCCCCCceEEEEEecCC-cccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEe
Q psy11780        185 VTRVSEDVPVG--TSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTE  261 (383)
Q Consensus       185 ~~~v~E~~~~g--t~v~~v~A~D~D~~~n~~i~y~i~~~~-~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D  261 (383)
                      .+.|+|+.+.|  +.++++ |+|+|.| ++.++|+|.++. ..+|.|++.+|.|++.++||||....    |.|.|.|+|
T Consensus         6 ~~~v~En~~~~~~~~v~~~-a~D~D~g-~~~i~Y~l~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l~v~a~D   79 (207)
T 3lnd_A            6 QFFLLEEYTGSDYQYVGKL-HSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPV----YILRAQAVN   79 (207)
T ss_dssp             CEEEESCBCSSSCEEEEEC-CCTTCCS-STTBCCCCCSSSBTTTEEECTTTCEEEECSCCCGGGCCE----EEC----CB
T ss_pred             ccEEEeecCCCCCEEEEEE-EeCCCCC-CceEEEEEECCCCCCeEEEECCceEEEECCCcCcccCCE----EEEEEEEEE
Confidence            45799998855  588888 9999998 788999998765 46999999999999999999999887    999999999


Q ss_pred             CCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCCCCCCcceEEeecccc
Q psy11780        262 ESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVVP  341 (383)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~~  341 (383)
                      .+.                          .+++++++.|.|+|.|+|||+|.|.+..|.+.|+|++++|+.++++.    
T Consensus        80 ~~~--------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~----  129 (207)
T 3lnd_A           80 RRT--------------------------GRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVT----  129 (207)
T ss_dssp             SSS--------------------------CCCCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEEECC----
T ss_pred             CCC--------------------------CCccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEEEEE----
Confidence            884                          15678889999999999999999999999999999999999999998    


Q ss_pred             eEEeCCC---CCCeEEEEEEeCCCccEEEecccEEEE
Q psy11780        342 QVFDYDQ---GKNGTFQMFIEGDMGTFEITPQKIINE  375 (383)
Q Consensus       342 ~a~D~D~---g~n~~i~y~l~~~~~~F~I~~~tG~~~  375 (383)
                       |+|+|.   |.|+.++|+|.++.++|.|++.+|...
T Consensus       130 -A~D~D~~~~g~n~~i~Y~i~~~~~~F~Id~~tG~i~  165 (207)
T 3lnd_A          130 -ATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIK  165 (207)
T ss_dssp             -EECSSCTTSSSTTCCEEEEEESGGGEEECTTTCEEE
T ss_pred             -EEeCCCCCCCCCcEEEEEEcCCCCCEEEcCCCcEEE
Confidence             999998   889999999988778999999999754

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=99.95  E-value=7.7e-28  Score=216.11  Aligned_cols=152  Identities=25%  Similarity=0.382  Sum_probs=137.7

Q ss_pred             EEEEcCCCC--CCcEEEEEEEEeCCCCCCceEEEEEecCC-----cccEEEeCCCceEEEcccCCcccccCCCceEEEEE
Q psy11780        185 VTRVSEDVP--VGTSVLQVKAVDGDRGINNKILYSISSGS-----QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEI  257 (383)
Q Consensus       185 ~~~v~E~~~--~gt~v~~v~A~D~D~~~n~~i~y~i~~~~-----~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V  257 (383)
                      .++|+|+.+  .|+.|+++.| |.|.  |+.++|+|.+..     .++|.|++.+|.|++.++||||....    |.|.|
T Consensus         6 ~~~V~En~~~~~~~~v~~v~a-D~d~--n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l~v   78 (213)
T 3qrb_A            6 AISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAK----YILYS   78 (213)
T ss_dssp             EEEEETTCCSSSSEEEEECCC-GGGG--TSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSE----EEEEE
T ss_pred             CEEEeCCCCCCCCcEEEEEEE-CCCC--CceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCccCcccCce----EEEEE
Confidence            578999998  6788999999 7775  789999998733     35999999999999999999999887    99999


Q ss_pred             EEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCCCCCCcceEEee
Q psy11780        258 KVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLG  337 (383)
Q Consensus       258 ~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~  337 (383)
                      .|+|.++                           +++++++.|.|+|.|+|||+|.|.+..|.+.|+|++++|+.|+++.
T Consensus        79 ~a~D~~~---------------------------~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~  131 (213)
T 3qrb_A           79 HAVSSNG---------------------------EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVS  131 (213)
T ss_dssp             EEEETTS---------------------------CBCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEEECC
T ss_pred             EEEeCCC---------------------------CcccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEEEEE
Confidence            9999998                           6788899999999999999999999999999999999999999998


Q ss_pred             cccceEEeCCCC---CCeEEEEEEeC------CCccEEEecccEEEE
Q psy11780        338 GVVPQVFDYDQG---KNGTFQMFIEG------DMGTFEITPQKIINE  375 (383)
Q Consensus       338 ~~~~~a~D~D~g---~n~~i~y~l~~------~~~~F~I~~~tG~~~  375 (383)
                           |+|+|.|   .|+.++|+|.+      ..++|.|++.+|...
T Consensus       132 -----A~D~D~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~  173 (213)
T 3qrb_A          132 -----ATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVIS  173 (213)
T ss_dssp             -----EECCSCTTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEE
T ss_pred             -----EEeCCCCCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEE
Confidence                 9999999   89999999953      246899999999754

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=99.95  E-value=1.7e-27  Score=212.26  Aligned_cols=152  Identities=20%  Similarity=0.298  Sum_probs=137.1

Q ss_pred             cEEEEcCCCCCC--cEEEEEEEEeCCCCCCceEEEEEecCC-cccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEE
Q psy11780        184 SVTRVSEDVPVG--TSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVT  260 (383)
Q Consensus       184 ~~~~v~E~~~~g--t~v~~v~A~D~D~~~n~~i~y~i~~~~-~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~  260 (383)
                      ..++|+||.+.|  ..++++. +|+|.+.+   +|+|.++. .++|.|++.+|.|++.++||||....    |.|+|.|+
T Consensus         5 ~~~~V~En~~~~~~~~v~~v~-~D~D~g~~---~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l~v~a~   76 (203)
T 3ppe_A            5 NRMHIREEIDSPLPHHVGKLT-SSVGNKNA---MYIIEGESANTIFKVQGYDGDIYAFERLDREKKAE----YELTAHII   76 (203)
T ss_dssp             SEEEEETTCCSSSCEEEEECC-BCCCCTTE---EEEEEETTBTTTEEEETTTTEEEESSCCCTTTCCE----EEEEEEEE
T ss_pred             ccEEEEccCCCCCCEEEEEEE-ecCCCCCc---EEEEecCCCCCeEEEECCcCEEEECccccccccce----EEEEEEEE
Confidence            457899999888  8889988 99998755   99999765 56999999999999999999999987    99999999


Q ss_pred             eCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCCCCCCcceEEeeccc
Q psy11780        261 EESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGGVV  340 (383)
Q Consensus       261 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~~~~  340 (383)
                      |.+.                          ++++++++.|.|+|.|+|||+|.|.+..|.+.|+|++++|+.|+++.   
T Consensus        77 D~g~--------------------------~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~---  127 (203)
T 3ppe_A           77 DRRN--------------------------NRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVT---  127 (203)
T ss_dssp             ETTT--------------------------TEECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECC---
T ss_pred             ECCC--------------------------CCcccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEEEEE---
Confidence            9986                          12578889999999999999999999999999999999999999998   


Q ss_pred             ceEEeCC---CCCCeEEEEEEeCCCccEEEecccEEEE
Q psy11780        341 PQVFDYD---QGKNGTFQMFIEGDMGTFEITPQKIINE  375 (383)
Q Consensus       341 ~~a~D~D---~g~n~~i~y~l~~~~~~F~I~~~tG~~~  375 (383)
                        |+|+|   .|.|++++|+|.++.++|.|+ .+|...
T Consensus       128 --A~D~D~~~~g~n~~i~Y~i~~~~~~F~I~-~tG~i~  162 (203)
T 3ppe_A          128 --AEDADDPTVAGHATVTYQIIKGNEYFTVD-DSGVIF  162 (203)
T ss_dssp             --EECCSCTTSSSTTCEEEEEEESTTTEEEC-TTSEEE
T ss_pred             --EEcCCCcCCCCceEEEEEEeCCCCcEEEe-CCeEEE
Confidence              99999   488999999998777899999 888754

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.95  E-value=1e-28  Score=201.26  Aligned_cols=115  Identities=26%  Similarity=0.453  Sum_probs=108.8

Q ss_pred             EEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC---cccEEEeCCCceEEEcccCCc
Q psy11780        167 VKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS---QGIFDIDPNTGNIFTLKELDR  243 (383)
Q Consensus       167 I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~---~~~F~Id~~tG~i~~~~~lD~  243 (383)
                      ++|.|+|||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|.|.|+.++|+|.++.   ..+|.|++.+|.|+++++|||
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~LD~   81 (119)
T 2yst_A            2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDR   81 (119)
T ss_dssp             CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEECSCCCT
T ss_pred             CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEECccCCc
Confidence            46899999999999999999999999999999999999999999999999998764   478999999999999999999


Q ss_pred             ccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCC
Q psy11780        244 ESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETP  312 (383)
Q Consensus       244 E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P  312 (383)
                      |....    |.|.|.|+|+|.                           |++++++.|+|+|.|+|||+|
T Consensus        82 E~~~~----y~l~V~A~D~g~---------------------------p~~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           82 EEVNQ----LRFTVMARDRGQ---------------------------PPKTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             TTCSE----EEEEEEECCSBT---------------------------TBCCEEEEEEEEEECSTTCCC
T ss_pred             ccCCE----EEEEEEEEECCC---------------------------CCcEEEEEEEEEEEeccCCCC
Confidence            99876    999999999998                           778999999999999999998

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=99.95  E-value=5e-28  Score=218.15  Aligned_cols=151  Identities=26%  Similarity=0.369  Sum_probs=136.2

Q ss_pred             EEEEcCCCCCC--cEEEEEEEEeCCCCCCceEEEEEecCC-----cccEEEeCCCceEEEcccCCcccccCCCceEEEEE
Q psy11780        185 VTRVSEDVPVG--TSVLQVKAVDGDRGINNKILYSISSGS-----QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEI  257 (383)
Q Consensus       185 ~~~v~E~~~~g--t~v~~v~A~D~D~~~n~~i~y~i~~~~-----~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V  257 (383)
                      .++|+|+.+.|  +.++++.|.|+|.    .++|+|.+..     .++|.|++.+|.|++.++||||....    |.|.|
T Consensus         7 ~~~V~En~~~g~~~~v~~v~a~D~d~----~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l~v   78 (218)
T 3k5r_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT----YQLYV   78 (218)
T ss_dssp             CEEEETTCCSSCCEEEEECBCTTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSE----EEEEE
T ss_pred             cEEEecCCCCCCCEEEEEEEecCCCc----eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCcCCcccCCE----EEEEE
Confidence            57899999988  8899999988875    7999997532     58999999999999999999999887    99999


Q ss_pred             EEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCCCCCCcceEEee
Q psy11780        258 KVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLG  337 (383)
Q Consensus       258 ~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~  337 (383)
                      .|+|.++                           +++++++.|.|+|.|+|||+|.|.+..|.+.|+|++++|+.|+++.
T Consensus        79 ~a~D~g~---------------------------~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~  131 (218)
T 3k5r_A           79 ETTDASG---------------------------KTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMT  131 (218)
T ss_dssp             EEECSSS---------------------------CEEEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEEECC
T ss_pred             EEEECCC---------------------------CceeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEEEEE
Confidence            9999887                           7788999999999999999999999999999999999999999998


Q ss_pred             cccceEEeCCC--CCCeEEEEEEeCC------CccEEEecccEEEE
Q psy11780        338 GVVPQVFDYDQ--GKNGTFQMFIEGD------MGTFEITPQKIINE  375 (383)
Q Consensus       338 ~~~~~a~D~D~--g~n~~i~y~l~~~------~~~F~I~~~tG~~~  375 (383)
                           |+|+|.  |.|+.++|+|.+.      .++|.|++.||...
T Consensus       132 -----A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~  172 (218)
T 3k5r_A          132 -----AFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIV  172 (218)
T ss_dssp             -----CSCSSSSCGGGGCEEEEEEEEESCCSCSCSEEECTTTCEEE
T ss_pred             -----EEeCCCCCCCCcEEEEEEecCCCCCCcCCEEEEECCccEEE
Confidence                 999999  7899999999543      16899999999743

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.92  E-value=7.4e-26  Score=182.80  Aligned_cols=109  Identities=32%  Similarity=0.468  Sum_probs=101.2

Q ss_pred             EEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecC----CcccEEEeCCCceEEEcccCC
Q psy11780        167 VKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG----SQGIFDIDPNTGNIFTLKELD  242 (383)
Q Consensus       167 I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~----~~~~F~Id~~tG~i~~~~~lD  242 (383)
                      |+|.|+|||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|.|.|+.++|+|.+.    ...+|.|++.+|.|+++++||
T Consensus         2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~LD   81 (114)
T 2ee0_A            2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLD   81 (114)
T ss_dssp             CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSCCC
T ss_pred             CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEECccCC
Confidence            4689999999999999999999999999999999999999999999999999852    367999999999999999999


Q ss_pred             cccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecC
Q psy11780        243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVN  308 (383)
Q Consensus       243 ~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvN  308 (383)
                      ||....    |.|.|.|+|++.                           ++  ++++|+|+|+|+|
T Consensus        82 ~E~~~~----y~l~V~A~D~g~---------------------------~~--~~~~v~I~V~DvN  114 (114)
T 2ee0_A           82 REETAI----HKVTVLASDGSS---------------------------TP--ARATVTINVTDVN  114 (114)
T ss_dssp             TTTCSE----EEEEEEEESSSS---------------------------SC--EEEEEEEEEECCC
T ss_pred             cccCcE----EEEEEEEEECCC---------------------------Cc--eEEEEEEEEEECC
Confidence            999876    999999999997                           43  7899999999998

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=1.8e-25  Score=182.03  Aligned_cols=116  Identities=26%  Similarity=0.436  Sum_probs=101.5

Q ss_pred             EeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeC
Q psy11780         33 SSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVD  111 (383)
Q Consensus        33 ~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~  111 (383)
                      +|.|. ||+|+|.   +..|.++|+|  ++++|+.|+++.|+|+|.                    +.|++++|+|....
T Consensus         3 ~V~DvNDn~P~F~---~~~y~~~v~E--n~~~Gt~v~~v~A~D~D~--------------------g~n~~i~Y~i~~~~   57 (119)
T 2yst_A            3 SGSSGNDNSPRFE---KSVYEADLAE--NSAPGTPILQLRAADLDV--------------------GVNGQIEYVFGAAT   57 (119)
T ss_dssp             CCCCSCCCCCCCS---SSEEEEEEET--TCCTTCEEEECCCCCSSS--------------------SCCSCCCCEECSCC
T ss_pred             eEecCCCCCCCcC---CCcEEEEEEC--CCCCCCEEEEEEEEeCCC--------------------CCCCeEEEEEecCC
Confidence            34444 9999998   8899999999  999999999999999998                    34779999995422


Q ss_pred             CCCCCcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCC
Q psy11780        112 GDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPP  177 (383)
Q Consensus       112 ~~~~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P  177 (383)
                      +...++|.|++.+  |.|+++++||||....|.|.|+|+|.|.+  .+++++.|+|+|.|+|||+|
T Consensus        58 ~~~~~~F~Id~~t--G~I~~~~~LD~E~~~~y~l~V~A~D~g~p--~~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           58 ESVRRLLRLDETS--GWLSVLHRIDREEVNQLRFTVMARDRGQP--PKTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             TTHHHHEEECTTT--CEEEECSCCCTTTCSEEEEEEEECCSBTT--BCCEEEEEEEEEECSTTCCC
T ss_pred             CccccEEEEeCCc--eEEEECccCCcccCCEEEEEEEEEECCCC--CcEEEEEEEEEEEeccCCCC
Confidence            1124689999988  99999999999999999999999999886  56889999999999999998

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.91  E-value=6.6e-24  Score=193.58  Aligned_cols=164  Identities=21%  Similarity=0.249  Sum_probs=131.0

Q ss_pred             ccEEEEcCCCCCCcEEEEEEEEe-CCCCCCceEEEEEecCCcccEEEeCCCceEEEc---ccCCcccccCCCceEEEEEE
Q psy11780        183 SSVTRVSEDVPVGTSVLQVKAVD-GDRGINNKILYSISSGSQGIFDIDPNTGNIFTL---KELDRESATSNNGAYILEIK  258 (383)
Q Consensus       183 ~~~~~v~E~~~~gt~v~~v~A~D-~D~~~n~~i~y~i~~~~~~~F~Id~~tG~i~~~---~~lD~E~~~~~~~~y~l~V~  258 (383)
                      .+.+.|+|+++.|+.|..+.+.| .|.+.++.++|+|.+....+|.|++.+|.+++.   +.||||....    |.+.+.
T Consensus        21 ~~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~~~~~~f~id~~tg~~~l~~t~~~LDrE~~~~----~~~~~~   96 (242)
T 4apx_B           21 ATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMN----IHSIVV   96 (242)
T ss_dssp             SEEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEESCGGGCEEEETTTTEEEECCTTSCCCCSTTTC----CCEEEE
T ss_pred             eEEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEecCCCceEEECCCCCEEEEEecCCceeccCCCc----eEEEEE
Confidence            46789999999999988755544 455788999999997778899999999999874   6799999865    655555


Q ss_pred             EEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCCCCCCcceEEeec
Q psy11780        259 VTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVINTPVTFLGG  338 (383)
Q Consensus       259 a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~g~~v~~v~~  338 (383)
                      +.+.+.                         ......+.+.|+|.|.|+|||+|.|.+..|.+.|+|++++|+.|.++..
T Consensus        97 ~v~~~~-------------------------~~~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~  151 (242)
T 4apx_B           97 QVQCVN-------------------------KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS  151 (242)
T ss_dssp             EEEEEE-------------------------TTTCCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTT
T ss_pred             EEEeEC-------------------------CCCCeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeee
Confidence            544432                         0123566788999999999999999999999999999999999987432


Q ss_pred             ccceEEeCCCCCCeEEEEEEeCC------CccEEEec-ccEEEE
Q psy11780        339 VVPQVFDYDQGKNGTFQMFIEGD------MGTFEITP-QKIINE  375 (383)
Q Consensus       339 ~~~~a~D~D~g~n~~i~y~l~~~------~~~F~I~~-~tG~~~  375 (383)
                      ....|+|+|.|.|++++|+|...      .+.|.|++ .||...
T Consensus       152 ~~v~A~D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~  195 (242)
T 4apx_B          152 GDNGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVV  195 (242)
T ss_dssp             TTTSEECCSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCCEE
T ss_pred             cccccccCCCCcCCceEEEEecCCCCcccccceEEcCCCceEEE
Confidence            22349999999999999999643      24799995 588654

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=1.1e-23  Score=172.34  Aligned_cols=113  Identities=22%  Similarity=0.331  Sum_probs=104.7

Q ss_pred             CCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecC-----CcccEEEeCCCceEEEcccCCccccc
Q psy11780        173 EDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELDRESAT  247 (383)
Q Consensus       173 NDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~-----~~~~F~Id~~tG~i~~~~~lD~E~~~  247 (383)
                      +.+.|.|....|.+.+.|+.++|+.|++|. +|+|.+.|+.++|+|.++     ..++|.|++.+|.|++.++||||..+
T Consensus         6 ~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~   84 (123)
T 2yqg_A            6 SGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETP   84 (123)
T ss_dssp             SCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSCCBTTTBS
T ss_pred             cccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcccCcccCc
Confidence            578999999999999999999999999999 699999999999999874     25799999999999999999999998


Q ss_pred             CCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCC
Q psy11780        248 SNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSP  317 (383)
Q Consensus       248 ~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~  317 (383)
                      .    |.|.|.|+|.+.                           |++++++.|.|+|+|+|||+|.|.++
T Consensus        85 ~----y~l~V~A~D~g~---------------------------p~~~~~~~v~I~V~DvNDn~P~F~~~  123 (123)
T 2yqg_A           85 F----FLLTGYALDARG---------------------------NNVEKPLELRIKVLDINDNEPVFTQD  123 (123)
T ss_dssp             E----EEEEEEEECTTC---------------------------CEEEEEECCEEEEECTTCCCCCCCCC
T ss_pred             e----EEEEEEEEECCC---------------------------CceEEEEEEEEEEEEcCCCCCEeCCC
Confidence            7    999999999997                           77899999999999999999999763

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.3e-22  Score=163.75  Aligned_cols=110  Identities=26%  Similarity=0.447  Sum_probs=95.6

Q ss_pred             EeecC-CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeC
Q psy11780         33 SSVSG-NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVD  111 (383)
Q Consensus        33 ~v~~~-Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~  111 (383)
                      +|.|. ||+|+|.   +..|.++|+|  ++++|+.|+++.|+|+|.+                    .|++++|+|....
T Consensus         3 ~V~DvNDn~P~F~---~~~y~~~v~E--n~~~Gt~v~~v~A~D~D~g--------------------~n~~i~Y~i~~~~   57 (114)
T 2ee0_A            3 SGSSGNDNRPVFK---EGQVEVHIPE--NAPVGTSVIQLHATDADIG--------------------SNAEIRYIFGAQV   57 (114)
T ss_dssp             CCCCCCCCCCCCS---CSEEEEEEET--TCCTTCEEEECCCCSCSSC--------------------CCSCCEEEECSSC
T ss_pred             eEeeCCCCCCCcC---CCcEEEEEEC--CCCCCCEEEEEEEEeCCCC--------------------CCcEEEEEEccCC
Confidence            34455 9999998   8899999999  9999999999999999983                    4779999995311


Q ss_pred             -CCCCCcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcC
Q psy11780        112 -GDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVE  173 (383)
Q Consensus       112 -~~~~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvN  173 (383)
                       ++..++|.|++.+  |.|+++++||||....|.|.|.|+|.|++    +++++|+|+|+|+|
T Consensus        58 ~~~~~~~F~Id~~t--G~I~~~~~LD~E~~~~y~l~V~A~D~g~~----~~~~~v~I~V~DvN  114 (114)
T 2ee0_A           58 APATKRLFALNNTT--GLITVQRSLDREETAIHKVTVLASDGSST----PARATVTINVTDVN  114 (114)
T ss_dssp             CHHHHHHEEECTTT--CEEEECSCCCTTTCSEEEEEEEEESSSSS----CEEEEEEEEEECCC
T ss_pred             CCCccceEEEeCCe--eEEEECccCCcccCcEEEEEEEEEECCCC----ceEEEEEEEEEECC
Confidence             2345799999988  99999999999999999999999999875    27899999999997

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=3.1e-22  Score=163.63  Aligned_cols=115  Identities=21%  Similarity=0.312  Sum_probs=98.9

Q ss_pred             CCCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeC--CCC
Q psy11780         37 GNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVD--GDE  114 (383)
Q Consensus        37 ~Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~--~~~  114 (383)
                      ..++|.|.   ...|.+.+.|  ++++|+.|++|. +|+|.                    +.|+.++|+|....  .+.
T Consensus         6 ~r~~p~f~---~~~~~v~e~e--~~~~gt~v~~v~-~D~D~--------------------g~n~~i~Y~i~~~~~~~~~   59 (123)
T 2yqg_A            6 SGQKRAWI---TAPVALREGE--DLSKKNPIAKIH-SDLAE--------------------ERGLKITYKYTGKGITEPP   59 (123)
T ss_dssp             SCSCCSSC---CCCEEEESSS--CCCSSCCCBCCC-CHHHH--------------------HHTCCCEEEEEEBTTTBSS
T ss_pred             cccCCccC---CCCEEEEecC--CCCCCCEEEEEE-ECCCC--------------------CCCceEEEEEecCCCCCCc
Confidence            37999998   6677666555  999999999999 68887                    45779999996531  134


Q ss_pred             CCcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEec
Q psy11780        115 KDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVA  181 (383)
Q Consensus       115 ~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~  181 (383)
                      .++|.|++.+  |.|+++++||||+...|.|+|.|+|.|.+  .+++++.|.|.|.|+|||+|.|.+
T Consensus        60 ~~~F~Id~~t--G~i~~~~~LDrE~~~~y~l~V~A~D~g~p--~~~~~~~v~I~V~DvNDn~P~F~~  122 (123)
T 2yqg_A           60 FGIFVFNKDT--GELNVTSILDREETPFFLLTGYALDARGN--NVEKPLELRIKVLDINDNEPVFTQ  122 (123)
T ss_dssp             CSSEEEETTT--TEEEECSCCBTTTBSEEEEEEEEECTTCC--EEEEEECCEEEEECTTCCCCCCCC
T ss_pred             CCCEEEeCCc--CEEEECcccCcccCceEEEEEEEEECCCC--ceEEEEEEEEEEEEcCCCCCEeCC
Confidence            6799999988  99999999999999999999999999876  578899999999999999999975

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.84  E-value=5.8e-21  Score=152.96  Aligned_cols=98  Identities=23%  Similarity=0.388  Sum_probs=79.2

Q ss_pred             ccEEEEcCCCCCCcE--EEEEEEEeCCCCCCceEEEEEecC-----CcccEEEeCCCceEEEcccCCcccccCCCceEEE
Q psy11780        183 SSVTRVSEDVPVGTS--VLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELDRESATSNNGAYIL  255 (383)
Q Consensus       183 ~~~~~v~E~~~~gt~--v~~v~A~D~D~~~n~~i~y~i~~~-----~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l  255 (383)
                      .|.++|+|++++|+.  |+++   |.|.+.|+.++|+|.++     ..++|.|++.+|.|++.++||||..+.    |.|
T Consensus         6 ~~~~~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l   78 (110)
T 1ncg_A            6 IPPINLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIAR----FHL   78 (110)
T ss_dssp             CCCEEECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCE----EEE
T ss_pred             eeeEEEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCcCCcccCCe----EEE
Confidence            367899999999995  5554   77888899999999863     367999999999999999999999877    999


Q ss_pred             EEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcc
Q psy11780        256 EIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTF  314 (383)
Q Consensus       256 ~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f  314 (383)
                      .|.|+|.+.                           |++++++.|.|+|+|+|||+|.|
T Consensus        79 ~V~A~D~g~---------------------------p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           79 RAHAVDING---------------------------NQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             EEEEECTTS---------------------------CBCSCCEEEEEEEC---------
T ss_pred             EEEEEECCC---------------------------CceeeEEEEEEEEEECCCCCCCC
Confidence            999999998                           77899999999999999999998

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.80  E-value=6.1e-20  Score=146.97  Aligned_cols=101  Identities=25%  Similarity=0.363  Sum_probs=77.3

Q ss_pred             eEEEEEecCCCCCCCeE--EEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeee--CCCCCCcEEEEeecc
Q psy11780         50 EIVIRLKEGPDTPAGTF--IYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENV--DGDEKDLFSISTVNG  125 (383)
Q Consensus        50 ~~~~~v~E~~~~~~g~~--i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~--~~~~~~~F~I~~~t~  125 (383)
                      .|.++|+|  ++++|+.  |+++   |.|.                    +.|++++|+|...  +++..+.|.|++.+ 
T Consensus         6 ~~~~~v~E--n~~~gt~~~v~~v---d~D~--------------------g~n~~i~Y~i~~~~~~~~~~~~F~Id~~t-   59 (110)
T 1ncg_A            6 IPPINLPE--NSRGPFPQELVRI---RSGR--------------------DKNLSLRYSVTGPGADQPPTGIFIINPIS-   59 (110)
T ss_dssp             CCCEEECS--SCCCCSSEEEEEC---CCGG--------------------GGGSCCEEEEESBTTTBSSTTSEEECTTT-
T ss_pred             eeeEEEeC--CCCCCCcEEEEEE---eCCC--------------------CCCCEEEEEEeCCCCCCCcCCEEEEECCC-
Confidence            56789999  9999995  5555   5555                    3467999999642  23557899999988 


Q ss_pred             eEEEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeE
Q psy11780        126 KGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEF  179 (383)
Q Consensus       126 ~G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f  179 (383)
                       |.|+++++||||+...|.|.|.|+|.|.+  .+++++.|+|+|.|+|||+|.|
T Consensus        60 -G~i~~~~~LDrE~~~~y~l~V~A~D~g~p--~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           60 -GQLSVTKPLDRELIARFHLRAHAVDINGN--QVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             -CEEEECSCCCTTTCCEEEEEEEEECTTSC--BCSCCEEEEEEEC---------
T ss_pred             -CEEEECCcCCcccCCeEEEEEEEEECCCC--ceeeEEEEEEEEEECCCCCCCC
Confidence             99999999999999999999999999876  5678999999999999999998

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=2.3e-20  Score=152.67  Aligned_cols=109  Identities=23%  Similarity=0.297  Sum_probs=90.0

Q ss_pred             CccEEEEcCCCCCCcEEEEEEEEeCCCCCCceE---EEEEecCC-cccEEEeCCCceEEEcccCCcccccCCCceEEEEE
Q psy11780        182 VSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKI---LYSISSGS-QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEI  257 (383)
Q Consensus       182 ~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i---~y~i~~~~-~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V  257 (383)
                      ..|.++|+|+.++|+.|+++ |+|+|.+. +.+   +|+|.++. .++|.||+.+|.|++.++||||........|.|.+
T Consensus        11 ~~~~~~V~E~~~~Gt~V~~v-a~D~d~~~-~~i~~~~Y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~c~~~~~y~l~v   88 (125)
T 1wyj_A           11 ATITYSVLEETDRGSLVGNL-AKDLGLSL-RELITRGAQILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHF   88 (125)
T ss_dssp             CCCCEEECSSCCTTCEEEES-TTTTTCCH-HHHHHTTCEEECSSSSCSEEECSSSSEEEESSCCCSTTTCTTCSSCCBCC
T ss_pred             ceEEEEEECCCCCCCEEEEE-EecCCCCC-CceeeEEEEEecCCCCCeEEEECCccEEEECccccchhhcccCCcEEEEE
Confidence            45678999999999999999 99988763 345   89997643 78999999999999999999999822222399999


Q ss_pred             EEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCceEEE
Q psy11780        258 KVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAE  322 (383)
Q Consensus       258 ~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~  322 (383)
                      +|.+...                              ...+.|.|+|+|+|||+|.|.++.|.++
T Consensus        89 ~a~~~~p------------------------------~~~~~V~I~V~DvNDN~P~F~~~~y~vs  123 (125)
T 1wyj_A           89 QVLLKSP------------------------------VQFIQGEIQLQDVNDHAPEFMEDESGPS  123 (125)
T ss_dssp             EEEETTT------------------------------TEEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred             EEEECCC------------------------------CeEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence            9997432                              3578999999999999999999887653

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.74  E-value=1.3e-19  Score=148.16  Aligned_cols=109  Identities=22%  Similarity=0.243  Sum_probs=89.4

Q ss_pred             eeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEE
Q psy11780         49 TEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGV  128 (383)
Q Consensus        49 ~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~  128 (383)
                      ..|.++|+|  +.++|+.|+++ |+|.|.+.                  +....+.|+|.  .++..++|.|++.+  |.
T Consensus        11 ~~~~~~V~E--~~~~Gt~V~~v-a~D~d~~~------------------~~i~~~~Y~i~--~~~~~~~F~Id~~t--G~   65 (125)
T 1wyj_A           11 ATITYSVLE--ETDRGSLVGNL-AKDLGLSL------------------RELITRGAQIL--SKGNKQLLQLEQKS--GN   65 (125)
T ss_dssp             CCCCEEECS--SCCTTCEEEES-TTTTTCCH------------------HHHHHTTCEEE--CSSSSCSEEECSSS--SE
T ss_pred             ceEEEEEEC--CCCCCCEEEEE-EecCCCCC------------------CceeeEEEEEe--cCCCCCeEEEECCc--cE
Confidence            356678999  99999999999 99998742                  00012278884  35557899999998  99


Q ss_pred             EEEcccCCCCCC----cEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEE
Q psy11780        129 IKLIGKLDYENK----FLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTR  187 (383)
Q Consensus       129 I~~~~~LD~E~~----~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~  187 (383)
                      |+++++||||+.    ..|.|.|.|.+.. |   . ..+.|.|.|+|+|||+|.|.+..|.++
T Consensus        66 i~~~~~LDRE~~c~~~~~y~l~v~a~~~~-p---~-~~~~V~I~V~DvNDN~P~F~~~~y~vs  123 (125)
T 1wyj_A           66 LLLKEKLDREELCGSTNPCILHFQVLLKS-P---V-QFIQGEIQLQDVNDHAPEFMEDESGPS  123 (125)
T ss_dssp             EEESSCCCSTTTCTTCSSCCBCCEEEETT-T---T-EEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred             EEECccccchhhcccCCcEEEEEEEEECC-C---C-eEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence            999999999999    9999999999743 2   2 478999999999999999999988754

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.73  E-value=1.1e-17  Score=131.02  Aligned_cols=90  Identities=29%  Similarity=0.394  Sum_probs=81.8

Q ss_pred             cEEEEcCCCC--CCcEEEEEEEEeCCCCCCceEEEEEecCC-cccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEE
Q psy11780        184 SVTRVSEDVP--VGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVT  260 (383)
Q Consensus       184 ~~~~v~E~~~--~gt~v~~v~A~D~D~~~n~~i~y~i~~~~-~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~  260 (383)
                      +.++|+||.+  .|+.|++|. +|+|.| |++++|+|.++. .++|.||+.+|.|++.++||||..+.    |.|+|.|+
T Consensus         6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l~V~A~   79 (99)
T 1zvn_A            6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQ----YTLRAQAL   79 (99)
T ss_dssp             CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSE----EEEEEEEE
T ss_pred             cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCCCCCceEEEeCCCCCEEECeecCCccCCe----EEEEEEEE
Confidence            4678999976  689999999 999999 999999998755 47899999999999999999999987    99999999


Q ss_pred             eCC-CCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEee
Q psy11780        261 EES-KTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       261 D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~D  306 (383)
                      |.| +                           |++++.+.|.|+|.|
T Consensus        80 D~G~~---------------------------p~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           80 DRRTG---------------------------RPMEPESEFIIKIQD   99 (99)
T ss_dssp             ETTTC---------------------------CBSSCCEEEEEEEEC
T ss_pred             ECCCC---------------------------CCcceeEEEEEEEeC
Confidence            998 5                           678999999999987

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.72  E-value=2.7e-17  Score=128.54  Aligned_cols=91  Identities=29%  Similarity=0.386  Sum_probs=79.6

Q ss_pred             cEEEEcCCCC--CCcEEEEEEEEeCCCCCCceEEEEEecCC-cccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEE
Q psy11780        184 SVTRVSEDVP--VGTSVLQVKAVDGDRGINNKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVT  260 (383)
Q Consensus       184 ~~~~v~E~~~--~gt~v~~v~A~D~D~~~n~~i~y~i~~~~-~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~  260 (383)
                      +.++|+||.+  .|+.|+++. +|+|.| |++++|+|.++. .++|.||+.+|.|++.++||||..+.    |.|+|.|+
T Consensus         5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l~v~A~   78 (98)
T 1zxk_A            5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAE----YTLTAQAV   78 (98)
T ss_dssp             CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEETTBTTTEEECTTTCEEEECSCCCTTTCSE----EEEEEEEE
T ss_pred             ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCCCCCCEEEEECCccEEEECccCCCcCCCe----EEEEEEEE
Confidence            5678999995  899999997 999999 999999998764 45899999999999999999999987    99999999


Q ss_pred             eCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEee
Q psy11780        261 EESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       261 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~D  306 (383)
                      |+|.                          +|++++++.|.|+|+|
T Consensus        79 D~g~--------------------------~~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           79 DFET--------------------------NKPLEPPSEFIIKVQD   98 (98)
T ss_dssp             ETTT--------------------------CCBSSCCEEEEEEECC
T ss_pred             ECCC--------------------------CCCcceeEEEEEEEEC
Confidence            9985                          2568899999999987

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.70  E-value=2.4e-17  Score=129.19  Aligned_cols=91  Identities=23%  Similarity=0.273  Sum_probs=79.5

Q ss_pred             EEEEEecCCCCCC--CeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEee--eCCCCCCcEEEEeecce
Q psy11780         51 IVIRLKEGPDTPA--GTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLEN--VDGDEKDLFSISTVNGK  126 (383)
Q Consensus        51 ~~~~v~E~~~~~~--g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~--~~~~~~~~F~I~~~t~~  126 (383)
                      +.++|+|  |.++  |+.|++|+|+|+|.                        +++|+|..  .++++.+.|.|++.+  
T Consensus         5 ~~~~V~E--n~~~~~g~~v~~v~A~D~D~------------------------~i~Ysi~~~~~~~~~~~~F~Id~~t--   56 (99)
T 3k6d_A            5 PSISIPE--NQRIPFPKIVGRVVVSDRIP------------------------GSKIKLYGKGVDQEPKGIFKINENS--   56 (99)
T ss_dssp             CCEEEET--TCCSCSSEEEEECBCSSCCT------------------------TCEEEEESBTTTBSSTTSEEECTTT--
T ss_pred             CcEEEeC--CCCCCCCcEEEEEEEECCCC------------------------cEEEEEecCcCCCCCCCEEEEECCc--
Confidence            3578999  9999  99999999999998                        46677754  245667899999998  


Q ss_pred             EEEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEE
Q psy11780        127 GVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD  171 (383)
Q Consensus       127 G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~D  171 (383)
                      |.|++.++||||+.+.|.|.|.|+|.|++  .+++++.|+|+|.|
T Consensus        57 G~i~~~~~LDrE~~~~y~l~V~A~D~g~~--~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           57 GEVSVTKALDREAIPSYQLQVETTDENGK--TIEGPVDLEILVID   99 (99)
T ss_dssp             CEEEECSCCCTTTCCEEEEEEEEECTTCC--EEEEEEEEEEEEEC
T ss_pred             eEEEECcCCCcccCceEEEEEEEEECCCC--ceeeEEEEEEEEEC
Confidence            99999999999999999999999999876  57889999999987

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.67  E-value=1.6e-16  Score=124.72  Aligned_cols=90  Identities=24%  Similarity=0.285  Sum_probs=77.9

Q ss_pred             EEEEecCCCCCC--CeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeee--CCCCCCcEEEEeecceE
Q psy11780         52 VIRLKEGPDTPA--GTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENV--DGDEKDLFSISTVNGKG  127 (383)
Q Consensus        52 ~~~v~E~~~~~~--g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~--~~~~~~~F~I~~~t~~G  127 (383)
                      .++|+|  |.+.  |+.|++|.|+|+|.                        +++|+|...  ++++.+.|.|++.+  |
T Consensus         7 ~~~V~E--N~~~~~g~~v~~V~A~D~D~------------------------~i~Ysi~~~~~~~~~~~~F~Id~~t--G   58 (100)
T 3k6f_A            7 PILIPE--NQRQPFPRDVGKVVDSDRPE------------------------GSKFRLTGKGVDQDPKGTFRINENT--G   58 (100)
T ss_dssp             CEEEET--TCCSSSCEEEEECEETTCCT------------------------TCEEEEEEBTTTBSSTTSEEECTTT--C
T ss_pred             cEEEeC--CCCCCCCcEEEEEEEEcCCC------------------------CEEEEEeCCCCCCCcCCEEEEECCC--C
Confidence            468999  8887  89999999999998                        356666532  24557899999998  9


Q ss_pred             EEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEE
Q psy11780        128 VIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD  171 (383)
Q Consensus       128 ~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~D  171 (383)
                      .|++.++||||+...|.|.|.|+|.|++  .++++++|+|.|+|
T Consensus        59 ~i~~~~~LDrE~~~~y~l~V~A~D~g~p--~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           59 SVSVTRTLDRETIATYQLYVETTDASGK--TLEGPVPLEVIVID  100 (100)
T ss_dssp             EEEECSCCCTTTCSEEEEEEEEECTTCC--EEEEEEEEEEEEEC
T ss_pred             EEEECcccCCcCCCEEEEEEEEEECCCC--cccceEEEEEEEEC
Confidence            9999999999999999999999999876  57889999999987

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.67  E-value=1.3e-16  Score=124.90  Aligned_cols=91  Identities=24%  Similarity=0.342  Sum_probs=79.4

Q ss_pred             EEEEEecCCCCC--CCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEE
Q psy11780         51 IVIRLKEGPDTP--AGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGV  128 (383)
Q Consensus        51 ~~~~v~E~~~~~--~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~  128 (383)
                      +.++|+|  |.+  .|+.|+++. +|+|.                    | |++++|+|..  +...+.|.|++.+  |.
T Consensus         6 ~~~~v~E--n~~~~~g~~v~~v~-~D~D~--------------------g-Ng~v~Ysi~~--~~~~~~F~Id~~t--G~   57 (99)
T 1zvn_A            6 NQFFVLE--EYTGTDPLYVGKLH-SDMDR--------------------G-DGSIKYILSG--EGAGIVFTIDDTT--GD   57 (99)
T ss_dssp             CEEEEEG--GGCSSSCEEEEECC-BTTCC--------------------S-SSCEEEEEEE--TTBTTTEEECTTT--CE
T ss_pred             cEEEEEC--CCCCCCCcEEEEEE-ECCCC--------------------C-CCEEEEEEeC--CCCCceEEEeCCC--CC
Confidence            4678999  865  789999999 99998                    6 7899999954  3445789999988  99


Q ss_pred             EEEcccCCCCCCcEEEEEEEEEeCC-CCCCCCeeEEEEEEEEEE
Q psy11780        129 IKLIGKLDYENKFLYQLKILAVDRS-NNDRRNTGTAAILVKVQD  171 (383)
Q Consensus       129 I~~~~~LD~E~~~~~~l~V~a~D~~-~~~~~~~~~~~v~I~V~D  171 (383)
                      |++.++||||+.+.|.|+|.|+|.| +|  ++++++.|.|+|.|
T Consensus        58 i~~~~~LDrE~~~~y~l~V~A~D~G~~p--~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           58 IHAIQRLDREERSQYTLRAQALDRRTGR--PMEPESEFIIKIQD   99 (99)
T ss_dssp             EEECSCCCTTTCSEEEEEEEEEETTTCC--BSSCCEEEEEEEEC
T ss_pred             EEECeecCCccCCeEEEEEEEEECCCCC--CcceeEEEEEEEeC
Confidence            9999999999999999999999998 45  56889999999987

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.67  E-value=2.7e-16  Score=123.19  Aligned_cols=90  Identities=21%  Similarity=0.296  Sum_probs=77.8

Q ss_pred             EEEEecCCCCCCC--eEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeee--CCCCCCcEEEEeecceE
Q psy11780         52 VIRLKEGPDTPAG--TFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENV--DGDEKDLFSISTVNGKG  127 (383)
Q Consensus        52 ~~~v~E~~~~~~g--~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~--~~~~~~~F~I~~~t~~G  127 (383)
                      .++|+|  |.+.|  +.|++|.|+|+|.                        +++|+|...  ++++.+.|.|++.+  |
T Consensus         6 ~~~v~E--N~~~g~~~~v~~V~A~D~D~------------------------~i~Ysi~~~~~~~~~~~~F~Id~~t--G   57 (99)
T 3k6i_A            6 PILIPE--NQRPPFPRSVGKVIRSEGTE------------------------GAKFRLSGKGVDQDPKGIFRINEIS--G   57 (99)
T ss_dssp             CEEEET--TCCSSSCEEEEECEETTCCS------------------------SEEEEEESBTTTBSSTTSEEECTTT--C
T ss_pred             cEEEeC--CCCCCCCeEEEEEEEEcCCC------------------------eEEEEEeCCCCCCCcCCEEEEECCC--c
Confidence            367899  98886  9999999999998                        466777532  34556899999998  9


Q ss_pred             EEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEE
Q psy11780        128 VIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD  171 (383)
Q Consensus       128 ~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~D  171 (383)
                      .|++.++||||+...|.|.|.|+|.|++  .++++++|.|.|.|
T Consensus        58 ~i~~~~~LDrE~~~~y~l~v~A~D~g~~--~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           58 DVSVTRPLDREAIANYELEVEVTDLSGK--IIDGPVRLDISVID   99 (99)
T ss_dssp             EEEECSCCCTTTCCEEEEEEEEEETTSC--EEEEEEEEEEEEEC
T ss_pred             EEEECcccCCccCCEEEEEEEEEECCCC--ceeeeEEEEEEEEC
Confidence            9999999999999999999999999876  57889999999987

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.67  E-value=1.5e-16  Score=124.61  Aligned_cols=88  Identities=25%  Similarity=0.382  Sum_probs=80.0

Q ss_pred             cEEEEcCCCCC--CcEEEEEEEEeCCCCCCceEEEEEecC-----CcccEEEeCCCceEEEcccCCcccccCCCceEEEE
Q psy11780        184 SVTRVSEDVPV--GTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELDRESATSNNGAYILE  256 (383)
Q Consensus       184 ~~~~v~E~~~~--gt~v~~v~A~D~D~~~n~~i~y~i~~~-----~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~  256 (383)
                      +.++|+||.++  |+.|++|.|+|+|.    .++|+|.+.     ..+.|.||+.+|.|++.++||||..+.    |.|.
T Consensus         5 ~~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l~   76 (99)
T 3k6d_A            5 PSISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPS----YQLQ   76 (99)
T ss_dssp             CCEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCE----EEEE
T ss_pred             CcEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEECcCCCcccCce----EEEE
Confidence            35789999999  99999999999996    799999852     157999999999999999999999987    9999


Q ss_pred             EEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEee
Q psy11780        257 IKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       257 V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~D  306 (383)
                      |.|+|+|+                           +++++.+.|.|+|+|
T Consensus        77 V~A~D~g~---------------------------~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           77 VETTDENG---------------------------KTIEGPVDLEILVID   99 (99)
T ss_dssp             EEEECTTC---------------------------CEEEEEEEEEEEEEC
T ss_pred             EEEEECCC---------------------------CceeeEEEEEEEEEC
Confidence            99999988                           778999999999987

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.66  E-value=1.7e-16  Score=123.97  Aligned_cols=92  Identities=30%  Similarity=0.402  Sum_probs=77.7

Q ss_pred             EEEEEecCCCC--CCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEE
Q psy11780         51 IVIRLKEGPDT--PAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGV  128 (383)
Q Consensus        51 ~~~~v~E~~~~--~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~  128 (383)
                      +.++|+|  +.  |.|+.|+++. +|+|.                    | |++++|+|..  +...+.|.|++.+  |.
T Consensus         5 ~~~~v~E--n~~~p~~~~v~~v~-~D~D~--------------------g-N~~v~Ysi~~--~~~~~~F~Id~~t--G~   56 (98)
T 1zxk_A            5 NQMFVLE--EFSGPEPILVGRLH-TDLDP--------------------G-SKKIKYILSG--DGAGTIFQINDIT--GD   56 (98)
T ss_dssp             CEEEECG--GGCSSSCEEEEECC-BCCCC--------------------C---CEEEEEEE--TTBTTTEEECTTT--CE
T ss_pred             ceEEEEC--CCCCCCCeEEEEEE-ECCCC--------------------C-CCEEEEEEeC--CCCCCEEEEECCc--cE
Confidence            4678999  87  4899999997 99998                    5 7899999964  3335689999988  99


Q ss_pred             EEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEE
Q psy11780        129 IKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD  171 (383)
Q Consensus       129 I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~D  171 (383)
                      |++.++||||+.+.|.|+|.|+|.|.++ ++++++.|+|.|.|
T Consensus        57 i~~~~~LDrE~~~~y~l~v~A~D~g~~~-~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           57 IHAIKRLDREEKAEYTLTAQAVDFETNK-PLEPPSEFIIKVQD   98 (98)
T ss_dssp             EEECSCCCTTTCSEEEEEEEEEETTTCC-BSSCCEEEEEEECC
T ss_pred             EEECccCCCcCCCeEEEEEEEEECCCCC-CcceeEEEEEEEEC
Confidence            9999999999999999999999998632 46888999999976

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.66  E-value=1.8e-16  Score=125.53  Aligned_cols=89  Identities=26%  Similarity=0.394  Sum_probs=78.5

Q ss_pred             EEEEcCCCC--CCcEEEEEEEEeCCCCCCceEEEEEecCC-----cccEEEeCCCceEEEcccCCcccccCCCceEEEEE
Q psy11780        185 VTRVSEDVP--VGTSVLQVKAVDGDRGINNKILYSISSGS-----QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEI  257 (383)
Q Consensus       185 ~~~v~E~~~--~gt~v~~v~A~D~D~~~n~~i~y~i~~~~-----~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V  257 (383)
                      .++|+||.+  .|+.|+++.| |  .+.|+.++|+|.++.     .++|.||+.+|.|++.++||||..+.    |.|+|
T Consensus        10 ~~~V~En~~~~~~~~v~~v~A-d--~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~LDrE~~~~----y~l~V   82 (105)
T 2omz_B           10 PISCPENEKGPFPKNLVQIKS-N--KDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIAT----YTLFS   82 (105)
T ss_dssp             CCCEESSCCSSSSEEEEECEE-G--GGGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCE----EEEEE
T ss_pred             CEEEeCCCCCCCCcEEEEEEC-C--CCCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECccCCcCCCCe----EEEEE
Confidence            468999998  5889999999 3  356999999998754     35899999999999999999999987    99999


Q ss_pred             EEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeec
Q psy11780        258 KVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDV  307 (383)
Q Consensus       258 ~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~Dv  307 (383)
                      +|+|.|.                           |++++++.|.|+|+|+
T Consensus        83 ~A~D~g~---------------------------p~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           83 HAVSSNG---------------------------NAVEDPMEILITVTDQ  105 (105)
T ss_dssp             EEECTTS---------------------------CBSSCCEEEEEEEEC-
T ss_pred             EEEECCC---------------------------CceeeEEEEEEEEEeC
Confidence            9999998                           7889999999999986

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.65  E-value=3.9e-16  Score=122.46  Aligned_cols=87  Identities=23%  Similarity=0.360  Sum_probs=79.2

Q ss_pred             EEEEcCCCCC--CcEEEEEEEEeCCCCCCceEEEEEecC-----CcccEEEeCCCceEEEcccCCcccccCCCceEEEEE
Q psy11780        185 VTRVSEDVPV--GTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEI  257 (383)
Q Consensus       185 ~~~v~E~~~~--gt~v~~v~A~D~D~~~n~~i~y~i~~~-----~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V  257 (383)
                      .+.|+||.+.  |+.|++|.|+|+|.    .++|+|.+.     ..+.|.||+.+|.|++.++||||....    |.|.|
T Consensus         7 ~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l~V   78 (100)
T 3k6f_A            7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT----YQLYV   78 (100)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSE----EEEEE
T ss_pred             cEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcccCCcCCCE----EEEEE
Confidence            5689999998  89999999999997    699999753     247999999999999999999999987    99999


Q ss_pred             EEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEee
Q psy11780        258 KVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       258 ~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~D  306 (383)
                      +|+|.|+                           |++++.+.|.|+|+|
T Consensus        79 ~A~D~g~---------------------------p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           79 ETTDASG---------------------------KTLEGPVPLEVIVID  100 (100)
T ss_dssp             EEECTTC---------------------------CEEEEEEEEEEEEEC
T ss_pred             EEEECCC---------------------------CcccceEEEEEEEEC
Confidence            9999998                           788999999999987

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.65  E-value=7.3e-16  Score=120.73  Aligned_cols=87  Identities=26%  Similarity=0.384  Sum_probs=79.0

Q ss_pred             EEEEcCCCCCC--cEEEEEEEEeCCCCCCceEEEEEecCC-----cccEEEeCCCceEEEcccCCcccccCCCceEEEEE
Q psy11780        185 VTRVSEDVPVG--TSVLQVKAVDGDRGINNKILYSISSGS-----QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEI  257 (383)
Q Consensus       185 ~~~v~E~~~~g--t~v~~v~A~D~D~~~n~~i~y~i~~~~-----~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V  257 (383)
                      .+.|+||.+.|  +.|++|.|+|+|.    .++|+|.+..     .+.|.||+.+|.|++.++||||....    |.|.|
T Consensus         6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l~v   77 (99)
T 3k6i_A            6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIAN----YELEV   77 (99)
T ss_dssp             CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCE----EEEEE
T ss_pred             cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcccCCccCCE----EEEEE
Confidence            46899999986  8999999999997    7999998632     47999999999999999999999987    99999


Q ss_pred             EEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEee
Q psy11780        258 KVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       258 ~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~D  306 (383)
                      +|+|.|+                           |++++.+.|.|+|+|
T Consensus        78 ~A~D~g~---------------------------~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           78 EVTDLSG---------------------------KIIDGPVRLDISVID   99 (99)
T ss_dssp             EEEETTS---------------------------CEEEEEEEEEEEEEC
T ss_pred             EEEECCC---------------------------CceeeeEEEEEEEEC
Confidence            9999998                           788999999999987

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.60  E-value=1.4e-15  Score=120.32  Aligned_cols=92  Identities=24%  Similarity=0.270  Sum_probs=76.1

Q ss_pred             EEEEecCCCCC--CCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCC--CCCCcEEEEeecceE
Q psy11780         52 VIRLKEGPDTP--AGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDG--DEKDLFSISTVNGKG  127 (383)
Q Consensus        52 ~~~v~E~~~~~--~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~--~~~~~F~I~~~t~~G  127 (383)
                      .++|+|  |++  .|+.|+++.| |.+                      .|++++|+|.....  .+.+.|.|++.+  |
T Consensus        10 ~~~V~E--n~~~~~~~~v~~v~A-d~g----------------------~N~~i~Ysi~~~~~~~~~~~~F~Id~~t--G   62 (105)
T 2omz_B           10 PISCPE--NEKGPFPKNLVQIKS-NKD----------------------KEGKVFYSITGQGADTPPVGVFIIERET--G   62 (105)
T ss_dssp             CCCEES--SCCSSSSEEEEECEE-GGG----------------------GSSCCEEEEEEBTTTBSSTTSEEECTTT--C
T ss_pred             CEEEeC--CCCCCCCcEEEEEEC-CCC----------------------CCCeEEEEEeCCCCCCCccCEEEEeCCC--C
Confidence            467899  888  5889999999 322                      26789999965321  125689999988  9


Q ss_pred             EEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEc
Q psy11780        128 VIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDV  172 (383)
Q Consensus       128 ~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~Dv  172 (383)
                      .|++.++||||+.+.|.|+|.|+|.|++  .+++++.|+|.|.|+
T Consensus        63 ~I~~~~~LDrE~~~~y~l~V~A~D~g~p--~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           63 WLKVTEPLDRERIATYTLFSHAVSSNGN--AVEDPMEILITVTDQ  105 (105)
T ss_dssp             EEEECSCCCTTTCCEEEEEEEEECTTSC--BSSCCEEEEEEEEC-
T ss_pred             EEEECccCCcCCCCeEEEEEEEEECCCC--ceeeEEEEEEEEEeC
Confidence            9999999999999999999999999986  568899999999985

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.51  E-value=3.7e-15  Score=117.53  Aligned_cols=98  Identities=19%  Similarity=0.330  Sum_probs=76.3

Q ss_pred             CccEEEEcCCCCCCcEEEEEEEEeCCCCCC--ceEEEEEecCC-cccEEEeCCCceEEEcccCCcccccCCCceEEEEEE
Q psy11780        182 VSSVTRVSEDVPVGTSVLQVKAVDGDRGIN--NKILYSISSGS-QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIK  258 (383)
Q Consensus       182 ~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n--~~i~y~i~~~~-~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~  258 (383)
                      ..+.++|+|+.++|+.|++| |.|+|.+.+  ..++|+|.++. .++|.||+.+|.|++.++||||........|.+.++
T Consensus         3 ~~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~~~LDRE~~~~~~~~~~~~~~   81 (103)
T 1wuz_A            3 SQIHYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLE   81 (103)
T ss_dssp             CEEEEEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCSSCSCSEEEETTTTEEEECSCCSHHHHCSSSSSCEEEEE
T ss_pred             eeEEEEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeCCCccEEEEECCeEEEEECCcCccccccCCCCcEEEEEE
Confidence            34678999999999999999 999886422  36899997644 789999999999999999999987321223556666


Q ss_pred             EEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCC
Q psy11780        259 VTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDE  310 (383)
Q Consensus       259 a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn  310 (383)
                      |... .                           | . ..+.|.|+|+|+|||
T Consensus        82 v~~~-~---------------------------p-~-~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           82 VIVD-R---------------------------P-L-QVFHVEVEVRDINDN  103 (103)
T ss_dssp             EEET-T---------------------------T-T-EEEEEEEEEECCSCC
T ss_pred             EEEC-C---------------------------C-C-EEEEEEEEEEEcCCC
Confidence            5543 2                           2 2 478999999999998

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.38  E-value=1.7e-14  Score=113.66  Aligned_cols=95  Identities=20%  Similarity=0.390  Sum_probs=73.1

Q ss_pred             eeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCcEEEEeecceEE
Q psy11780         49 TEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDLFSISTVNGKGV  128 (383)
Q Consensus        49 ~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~F~I~~~t~~G~  128 (383)
                      ..|.++|+|  +.++|+.|++| |.|+|.+.                  +..+.+.|+|.  .++..++|.|++.|  |.
T Consensus         3 ~~~~~~V~E--~~~~Gt~Vg~v-a~D~~~~~------------------~~~~~~~y~i~--~~~~~~~F~Id~~t--G~   57 (103)
T 1wuz_A            3 SQIHYSIPE--EAKHGTFVGRI-AQDLGLEL------------------TELVPRLFRVA--SKDRGDLLEVNLQN--GI   57 (103)
T ss_dssp             CEEEEEEES--SCCTTCBCCCH-HHHHTCCH------------------HHHTTTTBCCB--CSSCSCSEEEETTT--TE
T ss_pred             eeEEEEEEC--CCCCCCEEEEE-EeccCCCC------------------cccccEEEEEE--eCCCccEEEEECCe--EE
Confidence            356788999  99999999999 99988632                  01124678884  35557899999998  99


Q ss_pred             EEEcccCCCCCCc------EEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCC
Q psy11780        129 IKLIGKLDYENKF------LYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQ  175 (383)
Q Consensus       129 I~~~~~LD~E~~~------~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn  175 (383)
                      |+++++||||+..      .|.+.|.+  . .|   . ..+.|.|.|+|+|||
T Consensus        58 i~~~~~LDRE~~~~~~~~~~~~~~v~~--~-~p---~-~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           58 LFVNSRIDREELCGRSAECSIHLEVIV--D-RP---L-QVFHVEVEVRDINDN  103 (103)
T ss_dssp             EEECSCCSHHHHCSSSSSCEEEEEEEE--T-TT---T-EEEEEEEEEECCSCC
T ss_pred             EEECCcCccccccCCCCcEEEEEEEEE--C-CC---C-EEEEEEEEEEEcCCC
Confidence            9999999999863      55666655  2 22   2 378999999999997

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=93.56  E-value=3.1  Score=35.37  Aligned_cols=104  Identities=13%  Similarity=0.066  Sum_probs=56.3

Q ss_pred             CCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCC---CC-cEEEEEEEEeCCCCCCceE
Q psy11780        139 NKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVP---VG-TSVLQVKAVDGDRGINNKI  214 (383)
Q Consensus       139 ~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~---~g-t~v~~v~A~D~D~~~n~~i  214 (383)
                      ....|.|+++|.|..+.   .+.+..+.|.|.+  ..+|...     +.-+.+..   .| ..-....|.|.|.+ =.++
T Consensus        59 ~~G~htlta~A~D~aGn---~s~s~~v~vtV~~--~~~Ptv~-----itsP~~g~~~~~~~~vtl~~~AsD~~g~-V~~V  127 (190)
T 3pdd_A           59 AVGAYNLKAVAVLSDGR---RIESPVTPVLVKV--IVKPTVK-----LTAPKSNVVAYGNEFLKITATASDSDGK-ISRV  127 (190)
T ss_dssp             CSEEEEEEEEEEETTSC---EEECCCEEEEEEC--CCCCEEE-----EEECCTTCCCBTTSEEEEEEEEECSSSC-EEEE
T ss_pred             CCccEEEEEEEEECCCC---EeeecceeEEecc--CCCCcee-----ecCCCCCcEEecCCeEEEEEEEECCCCc-EEEE
Confidence            35689999999999874   2333457777776  4688653     22333321   23 34456677776521 2344


Q ss_pred             EEEEecCCcccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEeCCC
Q psy11780        215 LYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESK  264 (383)
Q Consensus       215 ~y~i~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~  264 (383)
                      .|.+.+   ....-+. ++........       ..+.|.|+++|+|..+
T Consensus       128 e~~~dg---~~v~t~t-~~~y~~~~~~-------~~G~~tl~a~A~D~aG  166 (190)
T 3pdd_A          128 DFLVDG---EVIGSDR-EAPYEYEWKA-------VEGNHEISVIAYDDDD  166 (190)
T ss_dssp             EEEETT---EEEEEEC-SSSEEEEEEC-------CSEEEEEEEEEEETTC
T ss_pred             EEEECC---EEEeccc-CCCEEEEEec-------CCeeEEEEEEEEECCC
Confidence            455432   1121111 1111111111       1245999999999987

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=91.89  E-value=5.3  Score=33.88  Aligned_cols=112  Identities=11%  Similarity=0.086  Sum_probs=62.5

Q ss_pred             eeeeEEEEeeeee------eeeEEEEEeecCCCCCeEEeCCCeeEEEEEecCCCC--CCCeEEEEEEEEcCCCCceEEEE
Q psy11780         13 KEKHVLLIGTYLL------LSAILVDSSVSGNRAPRFIIDEQTEIVIRLKEGPDT--PAGTFIYRLRGADPDGDVLTFGV   84 (383)
Q Consensus        13 ~~~~~~l~~~~~~------~~~~~~i~v~~~Dn~P~F~~~~~~~~~~~v~E~~~~--~~g~~i~~v~A~D~D~~~~~~~~   84 (383)
                      ..-.|.|+++|.|      .+..+.+.+.. +.+|...        +.-+.....  .-+.+-+...|.|.|+.-     
T Consensus        59 ~~G~htlta~A~D~aGn~s~s~~v~vtV~~-~~~Ptv~--------itsP~~g~~~~~~~~vtl~~~AsD~~g~V-----  124 (190)
T 3pdd_A           59 AVGAYNLKAVAVLSDGRRIESPVTPVLVKV-IVKPTVK--------LTAPKSNVVAYGNEFLKITATASDSDGKI-----  124 (190)
T ss_dssp             CSEEEEEEEEEEETTSCEEECCCEEEEEEC-CCCCEEE--------EEECCTTCCCBTTSEEEEEEEEECSSSCE-----
T ss_pred             CCccEEEEEEEEECCCCEeeecceeEEecc-CCCCcee--------ecCCCCCcEEecCCeEEEEEEEECCCCcE-----
Confidence            3457899999988      22346666654 6777653        333441111  234566778889887621     


Q ss_pred             EccccceEEEeecceeEEEEEEEeee--CCCCCCcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeE
Q psy11780         85 QGHGHDVIRIENLNVMLKVVYHLENV--DGDEKDLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGT  162 (383)
Q Consensus        85 ~~~~~~~~~i~~~~~~~~v~y~i~~~--~~~~~~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~  162 (383)
                                      .++.|.+...  .......|...-.         .     ....|.|+++|.|..+.   .+.+
T Consensus       125 ----------------~~Ve~~~dg~~v~t~t~~~y~~~~~---------~-----~~G~~tl~a~A~D~aGn---~s~s  171 (190)
T 3pdd_A          125 ----------------SRVDFLVDGEVIGSDREAPYEYEWK---------A-----VEGNHEISVIAYDDDDA---ASTP  171 (190)
T ss_dssp             ----------------EEEEEEETTEEEEEECSSSEEEEEE---------C-----CSEEEEEEEEEEETTCC---BCCC
T ss_pred             ----------------EEEEEEECCEEEecccCCCEEEEEe---------c-----CCeeEEEEEEEEECCCC---EEec
Confidence                            1344443100  0001122222111         1     45689999999999885   3446


Q ss_pred             EEEEEEEEE
Q psy11780        163 AAILVKVQD  171 (383)
Q Consensus       163 ~~v~I~V~D  171 (383)
                      ..|.|.|.+
T Consensus       172 ~~vtvtv~~  180 (190)
T 3pdd_A          172 DSVKIFVKQ  180 (190)
T ss_dssp             EEEEEEEBC
T ss_pred             ceEEEEECC
Confidence            667777765

>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1

Probab=89.91  E-value=1.3  Score=36.63  Aligned_cols=81  Identities=15%  Similarity=0.187  Sum_probs=59.7

Q ss_pred             CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCc
Q psy11780         38 NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDL  117 (383)
Q Consensus        38 Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~  117 (383)
                      -+.|-|.   +..|...++-  +...|..+++|+=.|..+..                      .+.|.-    .+ ...
T Consensus        31 ~C~pGF~---~~~~~~~vp~--~l~~g~~lgkV~F~dC~g~~----------------------~~~~~s----sD-p~d   78 (159)
T 1op4_A           31 LCKTGFP---EDVYSAVLPK--DVHEGQPLLNVKFSNCNRKR----------------------KVQYES----SE-PAD   78 (159)
T ss_dssp             CCCCBCC---SCEEEECCCC--SSCSSCCEEECCCBCCSSCC----------------------CEEEEC----CC-SSE
T ss_pred             cccCCcC---cceeEEeccc--cccCCceeceeecccCCCCC----------------------ceeEEc----CC-CCC
Confidence            6779998   8888655555  78999999999988887643                      444544    12 338


Q ss_pred             EEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCC
Q psy11780        118 FSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSN  154 (383)
Q Consensus       118 F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~  154 (383)
                      |.|+++   |.|++++++-.-.. .-.|.|.|.|...
T Consensus        79 FkV~~D---GtVya~r~v~L~~~-~~~F~V~a~D~~t  111 (159)
T 1op4_A           79 FKVDED---GTVYAVRSFPLTAE-QAKFLIYAQDKET  111 (159)
T ss_dssp             EEEETT---TEEEEESCCSCSSS-CEEEEEEEEETTT
T ss_pred             eEEeCC---CcEEEecceeecCC-CcEEEEEEEcCCC
Confidence            999998   99999999754332 2378899999643

>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1

Probab=88.62  E-value=3.5  Score=33.98  Aligned_cols=80  Identities=18%  Similarity=0.277  Sum_probs=61.4

Q ss_pred             CCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCcccEEEeCCCceEEEcccCCcccccCCCceEE
Q psy11780        175 QPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAYI  254 (383)
Q Consensus       175 n~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~  254 (383)
                      ..|-|.+..|...++-....|..+++|.-.|-.  .+..+.|...  +...|.|++ .|.|++++++-.-...     -.
T Consensus        32 C~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~--g~~~~~~~ss--Dp~dFkV~~-DGtVya~r~v~L~~~~-----~~  101 (159)
T 1op4_A           32 CKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN--RKRKVQYESS--EPADFKVDE-DGTVYAVRSFPLTAEQ-----AK  101 (159)
T ss_dssp             CCCBCCSCEEEECCCCSSCSSCCEEECCCBCCS--SCCCEEEECC--CSSEEEEET-TTEEEEESCCSCSSSC-----EE
T ss_pred             ccCCcCcceeEEeccccccCCceeceeecccCC--CCCceeEEcC--CCCCeEEeC-CCcEEEecceeecCCC-----cE
Confidence            579999999977788888999999999887664  3567878753  233899987 4999999887543322     68


Q ss_pred             EEEEEEeCCC
Q psy11780        255 LEIKVTEESK  264 (383)
Q Consensus       255 l~V~a~D~~~  264 (383)
                      +.|.|.|...
T Consensus       102 F~V~a~D~~t  111 (159)
T 1op4_A          102 FLIYAQDKET  111 (159)
T ss_dssp             EEEEEEETTT
T ss_pred             EEEEEEcCCC
Confidence            8999999654

>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A

Probab=86.07  E-value=20  Score=32.65  Aligned_cols=153  Identities=16%  Similarity=0.103  Sum_probs=68.2

Q ss_pred             CCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC---cccEEEeCCCceEEEcccCCcccccCC
Q psy11780        173 EDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS---QGIFDIDPNTGNIFTLKELDRESATSN  249 (383)
Q Consensus       173 NDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~---~~~F~Id~~tG~i~~~~~lD~E~~~~~  249 (383)
                      +|+++.|.-..-...|.|+.  |+.-..|.-. .+......+.|....+.   ..-|.  +.+|.|....-   +..   
T Consensus         6 dd~~g~i~F~~~~y~V~E~~--g~v~vtV~R~-g~~~~~vtV~y~T~~GTA~ag~Dy~--~~~gtl~F~~G---et~---   74 (298)
T 3rb5_A            6 ADDPIRMYFEPGHYTVMENC--GEFEVRVVRR-GDISTYASVEYETQDGTASAGTDFV--GRKGLLSFPPG---VDE---   74 (298)
T ss_dssp             -----CEEESSSEEEEETTS--CCEECCEEEC-SCCSSCEEEEEEEEESSSCBTTTBC--CCEEEEEECTT---CCE---
T ss_pred             CCCceEEEEeCCEEEEecCc--eEEEEEEEEE-CCCCccEEEEEEeeCCccCCCCCcc--ccceEEEECCC---ceE---
Confidence            45677776666667899984  5554444332 24333456788766543   11222  22354432211   000   


Q ss_pred             CceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCceEEEEeCCCCC
Q psy11780        250 NGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPRYVAEIHENSVI  329 (383)
Q Consensus       250 ~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~  329 (383)
                         -.+.|...|...     ......+.+.+.....+     ..+......+|+|.| ||++|.|....-...|.|+.  
T Consensus        75 ---kti~V~I~dD~~-----~E~dEtF~v~Ls~p~~~-----a~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~E~~--  138 (298)
T 3rb5_A           75 ---QRFRIEVIDDDV-----FEEDECFYIRLFNPSEG-----VKLAVPMIATVMILD-DDHAGIFAFTDSVFEITESV--  138 (298)
T ss_dssp             ---ECCEECBCCCSS-----CCCCEEEEEEEECCCTT-----CCBCSCSEEEEEEEC-CCCCCEEECSCSEEEECTTC--
T ss_pred             ---EEEEEEEeCCCC-----ccCcEEEEEEEeCCCCC-----cEECCCceEEEEEec-cccccccccccccEEeecCC--
Confidence               112222222211     01122223322221000     112223356666676 57789876554467889985  


Q ss_pred             CcceEEeecccceEEeCCCCCCeEEEEEE
Q psy11780        330 NTPVTFLGGVVPQVFDYDQGKNGTFQMFI  358 (383)
Q Consensus       330 g~~v~~v~~~~~~a~D~D~g~n~~i~y~l  358 (383)
                      |.....+.      ...+......+.|..
T Consensus       139 g~~~~~V~------Rs~~~~g~vtV~~~T  161 (298)
T 3rb5_A          139 GRFELKVM------RYSGARGTVIVPYWT  161 (298)
T ss_dssp             CCEEEEEE------EESCCCSCEEEEEEE
T ss_pred             ceEEEEEE------EEecCCCCEEEEEEe
Confidence            55555553      223333334577764

>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}

Probab=84.84  E-value=3.4  Score=39.78  Aligned_cols=49  Identities=10%  Similarity=0.024  Sum_probs=33.5

Q ss_pred             cEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEE
Q psy11780        117 LFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKV  169 (383)
Q Consensus       117 ~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V  169 (383)
                      ...|...+ ...+.+.-|-+ +....|.|.+.++|.+.|  .+++...|+|+|
T Consensus       388 ~vtls~~~-~~~~sft~P~~-~~~~tl~f~LtVTD~~~p--~lTs~~rViVtV  436 (437)
T 2yhg_A          388 SVSISNSS-SASANVQIPSN-AGGKDIHILLTLRDNGSP--NLYAYRRVVINV  436 (437)
T ss_dssp             CCCEETTT-SSEEEEECCTT-CTTCEEEEEEEEEECSSS--CCEEEEEEEEEE
T ss_pred             ceEeecCC-CceEEEEeCCC-CCCcEEEEEEEEEeCCCC--CccEEeEEEEEe
Confidence            44554322 14566665544 456899999999999865  467788888877

>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A

Probab=83.64  E-value=22  Score=32.42  Aligned_cols=77  Identities=18%  Similarity=0.233  Sum_probs=43.7

Q ss_pred             CCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEE
Q psy11780        137 YENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILY  216 (383)
Q Consensus       137 ~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y  216 (383)
                      +|....|.+.+..-..+.   .+......+|+|.| ||++|.|.-..-..++.|+.  |.....|.-+-. ....-.+.|
T Consensus        87 ~E~dEtF~v~Ls~p~~~a---~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~E~~--g~~~~~V~Rs~~-~~g~vtV~~  159 (298)
T 3rb5_A           87 FEEDECFYIRLFNPSEGV---KLAVPMIATVMILD-DDHAGIFAFTDSVFEITESV--GRFELKVMRYSG-ARGTVIVPY  159 (298)
T ss_dssp             CCCCEEEEEEEECCCTTC---CBCSCSEEEEEEEC-CCCCCEEECSCSEEEECTTC--CCEEEEEEEESC-CCSCEEEEE
T ss_pred             ccCcEEEEEEEeCCCCCc---EECCCceEEEEEec-cccccccccccccEEeecCC--ceEEEEEEEEec-CCCCEEEEE
Confidence            566666666654322221   23333445666676 57799887766667899984  666555554432 222345667


Q ss_pred             EEec
Q psy11780        217 SISS  220 (383)
Q Consensus       217 ~i~~  220 (383)
                      +...
T Consensus       160 ~T~d  163 (298)
T 3rb5_A          160 WTEN  163 (298)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            6543

>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}

Probab=80.56  E-value=14  Score=35.63  Aligned_cols=92  Identities=18%  Similarity=0.232  Sum_probs=56.0

Q ss_pred             cCCCCCeEecCcc------EEEEcCCCCCCcEEEEEEE---EeCCCCCCceEEEEEecCCc-----ccEEEe-CCCceEE
Q psy11780        172 VEDQPPEFVAVSS------VTRVSEDVPVGTSVLQVKA---VDGDRGINNKILYSISSGSQ-----GIFDID-PNTGNIF  236 (383)
Q Consensus       172 vNDn~P~f~~~~~------~~~v~E~~~~gt~v~~v~A---~D~D~~~n~~i~y~i~~~~~-----~~F~Id-~~tG~i~  236 (383)
                      .| ++|+..-..-      ..++.    .|..| ++.|   +|+|   +..++|+-..-..     ....|. +....+.
T Consensus       330 aN-haPVa~iag~~g~~p~~~~v~----aG~tV-tLdAs~SsDPD---GD~LtY~W~q~~g~g~~~~~vtls~~~~~~~s  400 (437)
T 2yhg_A          330 AN-HHPVPVVNNDANEAVMYLNAS----AGSTV-SLDASGSSDPD---GDSLNYSWSHYGEADSYSGSVSISNSSSASAN  400 (437)
T ss_dssp             SC-CCCBCCBTTBCCSSCEEEEEC----TTCEE-EEECTTCBCTT---CCCEEEEEEECTTTSSCCSCCCEETTTSSEEE
T ss_pred             CC-CCCEEEecCCCcccccceEec----CCCEE-EEEeeeeeCCC---CCeEEEEEEEeCCCCccccceEeecCCCceEE
Confidence            45 7888763221      33443    34433 4444   4777   3678887753221     245563 4445666


Q ss_pred             EcccCCcccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEE
Q psy11780        237 TLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIII  304 (383)
Q Consensus       237 ~~~~lD~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V  304 (383)
                      ...+-+- .    +..|.|.++++|.+.                           |.+++...|.|+|
T Consensus       401 ft~P~~~-~----~~tl~f~LtVTD~~~---------------------------p~lTs~~rViVtV  436 (437)
T 2yhg_A          401 VQIPSNA-G----GKDIHILLTLRDNGS---------------------------PNLYAYRRVVINV  436 (437)
T ss_dssp             EECCTTC-T----TCEEEEEEEEEECSS---------------------------SCCEEEEEEEEEE
T ss_pred             EEeCCCC-C----CcEEEEEEEEEeCCC---------------------------CCccEEeEEEEEe
Confidence            5555442 2    234999999999997                           6788888888887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	383
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	5e-16
d1l3wa3	113	b.1.6.1 (A:214-326) C-cadherin ectodomain {African	2e-09
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	2e-09
d1ncja2	114	b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu	6e-09
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	2e-08
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	4e-08
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	7e-07
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	8e-06
d1op4a_	136	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	6e-04

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 71.2 bits (173), Expect = 5e-16
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 3/110 (2%)

Query: 174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTG 233
           ++ P FV   S   VSED+  G  ++ + A D D+    K+ Y I +       ++ + G
Sbjct: 1   NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 60

Query: 234 NIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDV 283
            +     LDRES    N  Y + + VT++        T    + + + DV
Sbjct: 61  IVTGNGNLDRESEYVKNNTYTVIMLVTDDG---VSVGTGTGTLILHVLDV 107

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 3/112 (2%)

Query: 174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSI--SSGSQGIFDIDPN 231
           D  P F   +    V E+  +G  V ++   D D                  G F+I  +
Sbjct: 3   DNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61

Query: 232 TGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDV 283
             +   +    +         Y+L+I V        P PT+   VT+ + DV
Sbjct: 62  PESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 2e-09
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 13/111 (11%)

Query: 177 PEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPN 231
           P    V       E+   G     +  +  ++    K+ YSI+         G+F I+  
Sbjct: 1   PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59

Query: 232 TGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
           TG +   + LDRE        Y L       +     A     E+ I +TD
Sbjct: 60  TGWLKVTEPLDRE----RIATYTLFSHAVSSN---GNAVEDPMEILITVTD 103

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (121), Expect = 6e-09
 Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 10/116 (8%)

Query: 174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQ-------GIF 226
           D  PEF+       V E    GT V+ V A+D D       +      SQ        +F
Sbjct: 2   DNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMF 61

Query: 227 DIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
            I+  TG+I T+              Y L I+ T+         +      I +TD
Sbjct: 62  TINNETGDIITVAAGLDREKVQQ---YTLIIQATDMEGNPTYGLSNTATAVITVTD 114

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 13/100 (13%)

Query: 188 VSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-----QGIFDIDPNTGNIFTLKELD 242
           VSE+   G    ++  +  ++   NK+ YSI+        QG+F I+  TG +   + LD
Sbjct: 9   VSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLD 67

Query: 243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
           RE        Y+L      E+           E+TI + D
Sbjct: 68  REEYDK----YVLSSHAVSEN---GSPVEEPMEITINVID 100

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.7 bits (115), Expect = 4e-08
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 13/106 (12%)

Query: 182 VSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSG-----SQGIFDIDPNTGNIF 236
           V     + E+   G    ++  +   R  N  + YS++         GIF I+P +G + 
Sbjct: 5   VIPPINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLS 63

Query: 237 TLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
             K LDRE        + L     + +           ++ I + D
Sbjct: 64  VTKPLDRE----LIARFHLRAHAVDIN---GNQVENPIDIVINVID 102

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 7e-07
 Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 14/117 (11%)

Query: 174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKA---VDGDRGINNKILYSISSGSQG-----I 225
           D  PEF        V+E    GTSV++V A    D     N  I Y+I S         +
Sbjct: 2   DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 61

Query: 226 FDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
           F ++ +TG I  L       +      Y L ++  +         +   +  I + D
Sbjct: 62  FTVNRDTGVISVLTSGLDRESYPT---YTLVVQAADLQ---GEGLSTTAKAVITVKD 112

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 42.3 bits (98), Expect = 8e-06
 Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGI---NNKILYSISSG-----SQGI 225
           D  P+F        V E V  GT V+ V A D D  I   N  + YSI           +
Sbjct: 3   DNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNL 62

Query: 226 FDIDPNTGNIFTLKE-LDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITD 282
           F I+  TG I  +   LDRE        Y L ++ T+         + + +  I ITD
Sbjct: 63  FTINRETGVISLIGTGLDREKFPE----YTLTVQATDLE---GAGLSVEGKAIIQITD 113

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (86), Expect = 6e-04
 Identities = 14/125 (11%), Positives = 32/125 (25%), Gaps = 14/125 (11%)

Query: 171 DVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDP 230
           ++      F        + +DV  G  +L VK  + +R    +        S+       
Sbjct: 5   EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYES-----SEPADFKVD 59

Query: 231 NTGNIFTLKELDRESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTV 290
             G ++ ++                 I   ++          +  V +       E    
Sbjct: 60  EDGTVYAVRSFPLT-----AEQAKFLIYAQDKETQ----EKWQVAVNLSREPTLTEEPMK 110

Query: 291 QPAPT 295
           +P   
Sbjct: 111 EPHEI 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	383
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.86
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.83
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.83
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.8
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.8
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.8
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.79
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.78
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.77
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.76
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.73
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.71
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.64
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.53
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.53
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.51
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.51
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.48
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.47
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.44
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	86.27

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.86  E-value=5.1e-22  Score=156.50  Aligned_cols=107  Identities=26%  Similarity=0.386  Sum_probs=99.4

Q ss_pred             CCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCcccEEEeCCCceEEEcccCCcccccCCCceE
Q psy11780        174 DQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNNGAY  253 (383)
Q Consensus       174 Dn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y  253 (383)
                      ||+|.|.+..|.+.|+|+.++|+.|+++.|+|+|.+.++.++|+|.++..++|.|++.+|.|++++.||||........|
T Consensus         1 Dn~P~F~~~~~~~~v~E~~~~g~~v~~v~A~D~D~~~~~~i~y~i~~~~~~~F~id~~tG~i~~~~~lD~E~~~~~~~~y   80 (107)
T d1l3wa4           1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTY   80 (107)
T ss_dssp             CCCCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCCSSCCCEEETTTTEEEECSCCCTTSSSCCSSCC
T ss_pred             CcCCCcCCCeEEEEEECCCCCCCEEEEeEEecCCcCcCCceeEEecCCCcccceeccccceEEEccccChhhccccCCeE
Confidence            68999999999999999999999999999999999999999999987778999999999999999999999765445669


Q ss_pred             EEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeec
Q psy11780        254 ILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDV  307 (383)
Q Consensus       254 ~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~Dv  307 (383)
                      .|.|.|+|.|.                           |+++++++|.|+|+||
T Consensus        81 ~l~v~a~D~g~---------------------------p~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          81 TVIMLVTDDGV---------------------------SVGTGTGTLILHVLDV  107 (107)
T ss_dssp             EEEEEEEECSS---------------------------SCCCCCEEEECCBCCC
T ss_pred             EEEEEEEECCc---------------------------CCcEEEEEEEEEEEeC
Confidence            99999999998                           7889999999999986

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.83  E-value=4.7e-21  Score=152.42  Aligned_cols=104  Identities=32%  Similarity=0.440  Sum_probs=94.3

Q ss_pred             cCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCC---CCceEEEEEecCC-----cccEEEeCCCceEEEc-ccCC
Q psy11780        172 VEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRG---INNKILYSISSGS-----QGIFDIDPNTGNIFTL-KELD  242 (383)
Q Consensus       172 vNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~---~n~~i~y~i~~~~-----~~~F~Id~~tG~i~~~-~~lD  242 (383)
                      .|||+|.|.+..|.+.|+|++++|+.|+++.|+|+|.+   .|+.+.|+|.++.     ..+|.|++.+|.|++. +.||
T Consensus         1 eNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~LD   80 (113)
T d1l3wa2           1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLD   80 (113)
T ss_dssp             CSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCCCC
T ss_pred             CCCCCCccCCCeEEEEEECCCCCCCEEEEEEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEeccccC
Confidence            49999999999999999999999999999999999975   5788999997643     4789999999999885 6799


Q ss_pred             cccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEee
Q psy11780        243 RESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       243 ~E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~D  306 (383)
                      ||....    |.|.|.|+|.++                           ++++++++|.|+|+|
T Consensus        81 ~E~~~~----y~l~V~a~D~~~---------------------------~~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          81 REKFPE----YTLTVQATDLEG---------------------------AGLSVEGKAIIQITD  113 (113)
T ss_dssp             TTTCCE----EEEEEEEEHHHH---------------------------TSCEEECCEEEEEEC
T ss_pred             cccCCE----EEEEEEEEECCC---------------------------CCcEEEEEEEEEEEC
Confidence            999877    999999999988                           778999999999987

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.2e-20  Score=149.62  Aligned_cols=103  Identities=32%  Similarity=0.479  Sum_probs=93.3

Q ss_pred             CCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCC---CCceEEEEEecCC-----cccEEEeCCCceEEEc-ccCCc
Q psy11780        173 EDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRG---INNKILYSISSGS-----QGIFDIDPNTGNIFTL-KELDR  243 (383)
Q Consensus       173 NDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~---~n~~i~y~i~~~~-----~~~F~Id~~tG~i~~~-~~lD~  243 (383)
                      |||+|.|.+..|.+.|+|++++|+.|+++.|+|+|.+   .|+.++|+|..+.     ..+|.|++.+|.|++. +.|||
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~   80 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR   80 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCT
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEeccccc
Confidence            8999999999999999999999999999999999975   4678999997532     4789999999999864 67999


Q ss_pred             ccccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEee
Q psy11780        244 ESATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       244 E~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~D  306 (383)
                      |....    |.|.|.|+|.+.                           |+++++++|.|+|+|
T Consensus        81 E~~~~----y~l~V~a~D~g~---------------------------~~~~~~~~v~I~V~D  112 (112)
T d1edha2          81 ESYPT----YTLVVQAADLQG---------------------------EGLSTTAKAVITVKD  112 (112)
T ss_dssp             TTCCE----EEEEEEEETGGG---------------------------TSCEEEEEEEEEEEC
T ss_pred             ccCcE----EEEEEEEEECCC---------------------------CccEEEEEEEEEEEC
Confidence            99877    999999999998                           788999999999987

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.80  E-value=4.2e-20  Score=146.80  Aligned_cols=110  Identities=24%  Similarity=0.341  Sum_probs=93.8

Q ss_pred             cCCCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCC--C
Q psy11780         36 SGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDG--D  113 (383)
Q Consensus        36 ~~Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~--~  113 (383)
                      .|||+|+|.   +..|.+.|+|  ++++|+.|+++.|+|+|.+.                 .+.|+++.|+|.....  .
T Consensus         1 eNDn~P~F~---~~~y~~~V~E--n~~~gt~v~~v~A~D~D~~~-----------------~~~n~~i~y~i~~~~~~~~   58 (113)
T d1l3wa2           1 QNDNRPKFT---QDVFRGSVRE--GVQPGTQVMAVSATDEDDNI-----------------DSLNGVLSYSILKQDPEEP   58 (113)
T ss_dssp             CSCCCCEES---SSCEEEEEET--TCCSSEEEEECCEECCSCCS-----------------SSSTTCCEEEEEEESSCCS
T ss_pred             CCCCCCccC---CCeEEEEEEC--CCCCCCEEEEEEeecccccc-----------------cccceEEEEEEecCCCCcc
Confidence            379999998   8899999999  99999999999999999742                 1346789999965432  2


Q ss_pred             CCCcEEEEeecceEEEEEc-ccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEE
Q psy11780        114 EKDLFSISTVNGKGVIKLI-GKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD  171 (383)
Q Consensus       114 ~~~~F~I~~~t~~G~I~~~-~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~D  171 (383)
                      ..++|.|++.+  |.|++. ++||||....|.|.|+|+|.+++  .++++++|.|+|.|
T Consensus        59 ~~~~F~i~~~t--G~i~~~~~~LD~E~~~~y~l~V~a~D~~~~--~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          59 IPNLFTINRET--GVISLIGTGLDREKFPEYTLTVQATDLEGA--GLSVEGKAIIQITD  113 (113)
T ss_dssp             CSCSEEECTTT--CEEEECSCCCCTTTCCEEEEEEEEEHHHHT--SCEEECCEEEEEEC
T ss_pred             ccceeeeeecc--eeEEEeccccCcccCCEEEEEEEEEECCCC--CcEEEEEEEEEEEC
Confidence            34789999988  999885 67999999999999999998876  57889999999987

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.2e-19  Score=143.89  Aligned_cols=109  Identities=26%  Similarity=0.374  Sum_probs=93.0

Q ss_pred             CCCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeC--CCC
Q psy11780         37 GNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVD--GDE  114 (383)
Q Consensus        37 ~Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~--~~~  114 (383)
                      |||+|+|.   +..|.+.|+|  ++++|+.|+++.|+|+|.+.                 .+.|+++.|+|....  ...
T Consensus         1 NDn~P~F~---~~~y~~~V~E--~~~~gt~v~~v~A~D~D~g~-----------------~~~n~~v~y~i~~~~~~~~~   58 (112)
T d1edha2           1 NDNRPEFT---QEVFEGSVAE--GAVPGTSVMKVSATDADDDV-----------------NTYNAAIAYTIVSQDPELPH   58 (112)
T ss_dssp             SCCCCEES---CSEEEEEEET--TCCTTCEEEECCEECCSCTT-----------------TCSTTCCEEEEEEEESCCSC
T ss_pred             CCCCCccC---CCEEEEEEEC--CCCCCCEEEEEEEEecccCC-----------------ccccceEEEEEecCCccccc
Confidence            69999998   8899999999  99999999999999999742                 124568999996532  233


Q ss_pred             CCcEEEEeecceEEEEE-cccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEE
Q psy11780        115 KDLFSISTVNGKGVIKL-IGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD  171 (383)
Q Consensus       115 ~~~F~I~~~t~~G~I~~-~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~D  171 (383)
                      ..+|.|++.+  |.|++ .++||||....|.|.|.|+|.+.|  .+++++.|.|.|+|
T Consensus        59 ~~~F~i~~~t--G~i~~~~~~lD~E~~~~y~l~V~a~D~g~~--~~~~~~~v~I~V~D  112 (112)
T d1edha2          59 KNMFTVNRDT--GVISVLTSGLDRESYPTYTLVVQAADLQGE--GLSTTAKAVITVKD  112 (112)
T ss_dssp             SCSEEECTTT--CEEEECSSCCCTTTCCEEEEEEEEETGGGT--SCEEEEEEEEEEEC
T ss_pred             eeEEEEeccc--ceEEEEecccccccCcEEEEEEEEEECCCC--ccEEEEEEEEEEEC
Confidence            5789999988  89986 567999999999999999999876  57889999999987

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=8e-20  Score=145.30  Aligned_cols=106  Identities=31%  Similarity=0.444  Sum_probs=88.7

Q ss_pred             CCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCC--CCCceEEEEEecCC-----cccEEEeCCCceE-EEcccCCcc
Q psy11780        173 EDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDR--GINNKILYSISSGS-----QGIFDIDPNTGNI-FTLKELDRE  244 (383)
Q Consensus       173 NDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~--~~n~~i~y~i~~~~-----~~~F~Id~~tG~i-~~~~~lD~E  244 (383)
                      |||+|.|.+..|.+.|+|++++|+.|+++.|+|+|.  +.|+.++|+|.++.     ..+|.|++.+|.+ ++.++||||
T Consensus         1 NDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~E   80 (114)
T d1ncja2           1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDRE   80 (114)
T ss_dssp             CCSCCCCSCSEEEEEECSSCCTTCEEEECCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSCCCTT
T ss_pred             CCCCCCcCCCeEEEEEeCCCCCCCEEEEEEEEECCCCccccceeEEEeccCCcCCCccceEEecCccceEEEeccccccc
Confidence            899999999999999999999999999999999995  67899999997532     5689999999975 567899999


Q ss_pred             cccCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEee
Q psy11780        245 SATSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       245 ~~~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~D  306 (383)
                      ....    |.|.|.|+|.++.                        ..+.+++.++|.|.|.|
T Consensus        81 ~~~~----y~l~V~A~D~~~~------------------------~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          81 KVQQ----YTLIIQATDMEGN------------------------PTYGLSNTATAVITVTD  114 (114)
T ss_dssp             TCSE----EEEEEEEESGGGC------------------------BTTBCEEEEEEEEEEC-
T ss_pred             cCCE----EEEEEEEEECCCC------------------------CCCCceEEEEEEEEEEC
Confidence            9876    9999999997751                        11335778888888876

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.1e-19  Score=144.50  Aligned_cols=110  Identities=23%  Similarity=0.332  Sum_probs=90.0

Q ss_pred             CCCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeee--CCCC
Q psy11780         37 GNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENV--DGDE  114 (383)
Q Consensus        37 ~Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~--~~~~  114 (383)
                      |||+|+|.   +..|.+.|+|  ++++|+.|+++.|+|+|.+.                  +.|+++.|+|...  .+..
T Consensus         1 NDn~P~F~---~~~y~~~V~E--n~~~gt~v~~v~A~D~D~~~------------------~~n~~i~y~i~~~~~~~~~   57 (114)
T d1ncja2           1 NDNRPEFL---HQVWNGSVPE--GSKPGTYVMTVTAIDADDPN------------------ALNGMLRYRIVSQAPSTPS   57 (114)
T ss_dssp             CCSCCCCS---CSEEEEEECS--SCCTTCEEEECCC-CCSCTT------------------STTTCCEEEEEEEESCCSC
T ss_pred             CCCCCCcC---CCeEEEEEeC--CCCCCCEEEEEEEEECCCCc------------------cccceeEEEeccCCcCCCc
Confidence            69999998   8899999999  99999999999999999643                  4567899999643  2344


Q ss_pred             CCcEEEEeecceEE-EEEcccCCCCCCcEEEEEEEEEeCCCC-CCCCeeEEEEEEEEEE
Q psy11780        115 KDLFSISTVNGKGV-IKLIGKLDYENKFLYQLKILAVDRSNN-DRRNTGTAAILVKVQD  171 (383)
Q Consensus       115 ~~~F~I~~~t~~G~-I~~~~~LD~E~~~~~~l~V~a~D~~~~-~~~~~~~~~v~I~V~D  171 (383)
                      .+.|.|++.+  |. ++++++||||....|.|.|+|+|.+++ ...+++.+.|+|.|.|
T Consensus        58 ~~~F~i~~~t--G~i~~~~~~lD~E~~~~y~l~V~A~D~~~~~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          58 PNMFTINNET--GDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  114 (114)
T ss_dssp             SCCEEECSSS--CEEEECSSCCCTTTCSEEEEEEEEESGGGCBTTBCEEEEEEEEEEC-
T ss_pred             cceEEecCcc--ceEEEeccccccccCCEEEEEEEEEECCCCCCCCceEEEEEEEEEEC
Confidence            5789999988  75 467889999999999999999997653 3346788888888876

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.3e-19  Score=148.62  Aligned_cols=127  Identities=14%  Similarity=0.175  Sum_probs=109.5

Q ss_pred             EcCCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCCcccEEEeCCCceEEEcccCCcccccCCC
Q psy11780        171 DVEDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGSQGIFDIDPNTGNIFTLKELDRESATSNN  250 (383)
Q Consensus       171 DvNDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~  250 (383)
                      |+|++.|.|.+..|.+.|+|+.+.|+.|++|.|+|.|.  ++.+.|++.  ....|.|++ +|.|++.++||||.. .  
T Consensus         5 ~~~~c~P~F~~~~Y~~~V~E~~~~Gt~v~~V~a~D~d~--~~~~~y~~~--~~~~F~i~~-~G~I~~~~~ld~e~~-~--   76 (136)
T d1op4a_           5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYESS--EPADFKVDE-DGTVYAVRSFPLTAE-Q--   76 (136)
T ss_dssp             CCCCCCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEECC--CSSEEEEET-TTEEEEESCCSCSSS-C--
T ss_pred             CCCCccceecCCeEEEEEECCCCCCCEEEEeEeecCCc--cccceeccc--cceeeeccc-cEEEEEecccCcccc-e--
Confidence            68899999999999999999999999999999999996  578999985  356799998 599999999999964 4  


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcccCCc-eEEEEeCCCCC
Q psy11780        251 GAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTFRSPR-YVAEIHENSVI  329 (383)
Q Consensus       251 ~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~-y~~~V~E~~~~  329 (383)
                        |.|.|.|.|.+.                           +. .+.+.|.|.+.|.|||.|.|.... +...++|+...
T Consensus        77 --y~l~V~A~D~g~---------------------------~~-~~~t~V~i~v~d~nd~~p~~~~~~~~~i~~P~~~~~  126 (136)
T d1op4a_          77 --AKFLIYAQDKET---------------------------QE-KWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAK  126 (136)
T ss_dssp             --EEEEEEEEETTT---------------------------TE-EEEEEEEECCCCCCCCCCSSCCCCSCCCSSCCCCCC
T ss_pred             --EEEEEEEEecCC---------------------------cc-eeeeEEEEEEcccCCCCCcccCCCCceEEccCcCCC
Confidence              999999999987                           43 467889999999999999997654 56778888877


Q ss_pred             CcceEE
Q psy11780        330 NTPVTF  335 (383)
Q Consensus       330 g~~v~~  335 (383)
                      |..+++
T Consensus       127 ~~~~l~  132 (136)
T d1op4a_         127 HSGALQ  132 (136)
T ss_dssp             CCSCCC
T ss_pred             CCCcce
Confidence            765543

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.77  E-value=1.6e-19  Score=142.00  Aligned_cols=103  Identities=29%  Similarity=0.471  Sum_probs=91.3

Q ss_pred             CCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCCc
Q psy11780         38 NRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKDL  117 (383)
Q Consensus        38 Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~~  117 (383)
                      ||+|+|.   +..|.+.|+|  +.++|+.|+++.|+|+|.+                    .|+.++|+|.   ++..++
T Consensus         1 Dn~P~F~---~~~~~~~v~E--~~~~g~~v~~v~A~D~D~~--------------------~~~~i~y~i~---~~~~~~   52 (107)
T d1l3wa4           1 NEAPFFV---PAVSRVDVSE--DLSRGEKIISLVAQDPDKQ--------------------QIQKLSYFIG---NDPARW   52 (107)
T ss_dssp             CCCCEES---SCEECCCBCT--TCCSSEEEEECCEECCCTT--------------------CCCCEEEEEC---CCSSCC
T ss_pred             CcCCCcC---CCeEEEEEEC--CCCCCCEEEEeEEecCCcC--------------------cCCceeEEec---CCCccc
Confidence            7999998   8899999999  9999999999999999984                    3678999994   345789


Q ss_pred             EEEEeecceEEEEEcccCCCCCC----cEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEc
Q psy11780        118 FSISTVNGKGVIKLIGKLDYENK----FLYQLKILAVDRSNNDRRNTGTAAILVKVQDV  172 (383)
Q Consensus       118 F~I~~~t~~G~I~~~~~LD~E~~----~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~Dv  172 (383)
                      |.|++.+  |.|+++++||||..    ..|.|.|.|+|.|.|  .++++++|.|+|+||
T Consensus        53 F~id~~t--G~i~~~~~lD~E~~~~~~~~y~l~v~a~D~g~p--~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          53 LTVNKDN--GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVS--VGTGTGTLILHVLDV  107 (107)
T ss_dssp             CEEETTT--TEEEECSCCCTTSSSCCSSCCEEEEEEEECSSS--CCCCCEEEECCBCCC
T ss_pred             ceecccc--ceEEEccccChhhccccCCeEEEEEEEEECCcC--CcEEEEEEEEEEEeC
Confidence            9999988  99999999999964    679999999999887  567889999999886

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2.4e-19  Score=147.03  Aligned_cols=125  Identities=13%  Similarity=0.123  Sum_probs=105.9

Q ss_pred             cCCCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCC
Q psy11780         36 SGNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEK  115 (383)
Q Consensus        36 ~~Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~  115 (383)
                      .+++.|+|.   +..|.+.|+|  ++++|+.|++|.|+|.|.+.                      .+.|++.     ..
T Consensus         6 ~~~c~P~F~---~~~Y~~~V~E--~~~~Gt~v~~V~a~D~d~~~----------------------~~~y~~~-----~~   53 (136)
T d1op4a_           6 IALCKTGFP---EDVYSAVLPK--DVHEGQPLLNVKFSNCNRKR----------------------KVQYESS-----EP   53 (136)
T ss_dssp             CCCCCCBCC---SCEEEECCCC--SSCSSCCEEECCCBCCSSCC----------------------CEEEECC-----CS
T ss_pred             CCCccceec---CCeEEEEEEC--CCCCCCEEEEeEeecCCccc----------------------cceeccc-----cc
Confidence            459999999   9999999999  99999999999999999843                      7888883     24


Q ss_pred             CcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEecCc-cEEEEcCCCCC
Q psy11780        116 DLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFVAVS-SVTRVSEDVPV  194 (383)
Q Consensus       116 ~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~-~~~~v~E~~~~  194 (383)
                      ..|.|+++   |.|+++++||||.. .|.|.|.|+|.|.+   ..+.+.|+|.+.|.|||.|.|.... +...++|+.+.
T Consensus        54 ~~F~i~~~---G~I~~~~~ld~e~~-~y~l~V~A~D~g~~---~~~~t~V~i~v~d~nd~~p~~~~~~~~~i~~P~~~~~  126 (136)
T d1op4a_          54 ADFKVDED---GTVYAVRSFPLTAE-QAKFLIYAQDKETQ---EKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAK  126 (136)
T ss_dssp             SEEEEETT---TEEEEESCCSCSSS-CEEEEEEEEETTTT---EEEEEEEEECCCCCCCCCCSSCCCCSCCCSSCCCCCC
T ss_pred             eeeecccc---EEEEEecccCcccc-eEEEEEEEEecCCc---ceeeeEEEEEEcccCCCCCcccCCCCceEEccCcCCC
Confidence            67999984   89999999999975 69999999999874   3567889999999999999997655 45678888877


Q ss_pred             CcEEE
Q psy11780        195 GTSVL  199 (383)
Q Consensus       195 gt~v~  199 (383)
                      |..++
T Consensus       127 ~~~~l  131 (136)
T d1op4a_         127 HSGAL  131 (136)
T ss_dssp             CCSCC
T ss_pred             CCCcc
Confidence            76543

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.73  E-value=4.1e-18  Score=134.80  Aligned_cols=106  Identities=30%  Similarity=0.437  Sum_probs=89.2

Q ss_pred             CCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCC--ceEEEEEecCCcccEEEe----CCCceEEEcccCCcccc
Q psy11780        173 EDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGIN--NKILYSISSGSQGIFDID----PNTGNIFTLKELDRESA  246 (383)
Q Consensus       173 NDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n--~~i~y~i~~~~~~~F~Id----~~tG~i~~~~~lD~E~~  246 (383)
                      |||+|+|.+..|.+.|+|+ ++|+.|+++.|+|+|.+.+  ..+.|.+.+.....|.|.    ..+|.|++.++||||..
T Consensus         2 NDn~P~F~~~~y~~~v~En-~~g~~v~~v~A~D~D~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~g~i~~~~~lD~E~~   80 (113)
T d1l3wa3           2 NDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELR   80 (113)
T ss_dssp             CCCCCCBSCSEEEEEEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEEEEESSCCCCSSC
T ss_pred             CCCCCEeCCCeEEEEEECC-CCCCEEEEEEEEccccCCcceeEEEEeeccccccceEEEeecCCCceEEEeeeecccccC
Confidence            8999999999999999999 5799999999999998643  345566665568889884    46789999999999999


Q ss_pred             cCCCceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeec
Q psy11780        247 TSNNGAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDV  307 (383)
Q Consensus       247 ~~~~~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~Dv  307 (383)
                      +.    |.|.|.|+|.+..                        ..++++++++|+|+|+||
T Consensus        81 ~~----y~l~V~a~D~~~~------------------------~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          81 KQ----YVLQITVENAEPF------------------------SVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             CC----EEEEECCEESSCC------------------------SSCCCCCCEEEEEEEECC
T ss_pred             CE----EEEEEEEEECCCC------------------------CCCceEeEEEEEEEEEeC
Confidence            87    9999999998530                        126688999999999996

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.71  E-value=9.7e-18  Score=132.58  Aligned_cols=109  Identities=27%  Similarity=0.339  Sum_probs=87.3

Q ss_pred             CCCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCCCCC
Q psy11780         37 GNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGDEKD  116 (383)
Q Consensus        37 ~Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~~~~  116 (383)
                      |||+|+|.   +..|.++|+|  + ++|+.|+++.|+|+|.+.                  ..+..+.|.+   .+...+
T Consensus         2 NDn~P~F~---~~~y~~~v~E--n-~~g~~v~~v~A~D~D~~~------------------~~~~~~~~~~---~~~~~~   54 (113)
T d1l3wa3           2 NDNAPIFD---PKTYTALVPE--N-EIGFEVQRLSVTDLDMPG------------------TPAWQAVYKI---RVNEGG   54 (113)
T ss_dssp             CCCCCCBS---CSEEEEEEES--S-SCCCEEEEECBCCCSCTT------------------STTSCEECCB---SCCTTS
T ss_pred             CCCCCEeC---CCeEEEEEEC--C-CCCCEEEEEEEEccccCC------------------cceeEEEEee---cccccc
Confidence            79999998   8899999999  7 579999999999999753                  1122333333   355678


Q ss_pred             cEEEEee--cceEEEEEcccCCCCCCcEEEEEEEEEeCCC-CCCCCeeEEEEEEEEEEc
Q psy11780        117 LFSISTV--NGKGVIKLIGKLDYENKFLYQLKILAVDRSN-NDRRNTGTAAILVKVQDV  172 (383)
Q Consensus       117 ~F~I~~~--t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~-~~~~~~~~~~v~I~V~Dv  172 (383)
                      .|.|...  +++|.|++.++||||....|.|.|+|+|.+. ..+.++++++|+|+|+||
T Consensus        55 ~f~i~~~~~~~~g~i~~~~~lD~E~~~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          55 FFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             CEEEEECTTTCCEEEEESSCCCCSSCCCEEEEECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             ceEEEeecCCCceEEEeeeecccccCCEEEEEEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence            9999754  4669999999999999999999999999753 122568899999999996

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.64  E-value=3e-17  Score=128.65  Aligned_cols=104  Identities=15%  Similarity=0.179  Sum_probs=85.1

Q ss_pred             CCCCCeEecCccEEEEcCCCCCCcEEEEEEEEeCCCCCCc-eEEEEEecCCcccEEEe-CCCceEEEcccCCcccccCCC
Q psy11780        173 EDQPPEFVAVSSVTRVSEDVPVGTSVLQVKAVDGDRGINN-KILYSISSGSQGIFDID-PNTGNIFTLKELDRESATSNN  250 (383)
Q Consensus       173 NDn~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~~~n~-~i~y~i~~~~~~~F~Id-~~tG~i~~~~~lD~E~~~~~~  250 (383)
                      |||+|.|.+.  ..+|.|+.+.+.   .|.|+|+|.+.|+ .++|+|.++....|.+. ...|.+...++||+|....  
T Consensus         1 NDNaP~f~~~--~~~v~e~~~~~~---~v~AtD~D~~~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ld~e~~~~--   73 (107)
T d1l3wa5           1 NDNGPVPSPR--VFTMCDQNPEPQ---VLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGD--   73 (107)
T ss_dssp             CCSCCCBSCC--CEEECSSSCCCE---EEEBCCSSCTTTTCCCCCBCCSCSSSSCBCCBCTTSSEEEEBCSSCCCSSC--
T ss_pred             CCCCCccCCC--EEEEEecCCCce---eEEEEcCccCccceeEeeeeecccccccccccccceeeeeeecccccccee--
Confidence            8999999864  457899987765   5789999998887 58999988776666664 4456666778999999877  


Q ss_pred             ceEEEEEEEEeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEeecCCCCCcc
Q psy11780        251 GAYILEIKVTEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITDVNDETPTF  314 (383)
Q Consensus       251 ~~y~l~V~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f  314 (383)
                        |.|.|.|+|+|+                           |+  .+++++|+|.|+|||+|.+
T Consensus        74 --y~l~V~a~D~G~---------------------------p~--~~~tv~V~V~Dc~dn~~~c  106 (107)
T d1l3wa5          74 --YSIYVLLSDAQN---------------------------NP--QLTVVNATVCSCEGKAIKC  106 (107)
T ss_dssp             --BCCEEECCSSSC---------------------------CC--EEEECCEEECSCSSSCCCC
T ss_pred             --EEEEEEEEeCCC---------------------------Cc--eEEEEEEEEEEeeCCcCcc
Confidence              999999999998                           43  4567999999999999976

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.53  E-value=1.6e-14  Score=111.47  Aligned_cols=90  Identities=29%  Similarity=0.444  Sum_probs=79.0

Q ss_pred             EEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-----cccEEEeCCCceEEEcccCCcccccCCCceEEEEEEE
Q psy11780        185 VTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-----QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKV  259 (383)
Q Consensus       185 ~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~-----~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a  259 (383)
                      .+.|+||.+ |.....+.+.|.|.+.|+.++|+|.++.     .++|.||+.+|.|+++++||||..+.    |.|.|.|
T Consensus         6 ~i~v~EN~~-~~~~~~v~~~~~D~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~lDrE~~~~----y~l~V~a   80 (100)
T d1l3wa1           6 PIKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDK----YVLSSHA   80 (100)
T ss_dssp             CEEEESSCC-SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCE----EEEEEEE
T ss_pred             CEEEeCCCC-CCCCEEEEEEECCCCCCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeeecccccCCE----EEEEEEE
Confidence            357999974 5556788888999988999999998643     35799999999999999999999877    9999999


Q ss_pred             EeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEee
Q psy11780        260 TEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       260 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~D  306 (383)
                      +|.++                           +++++++.|+|+|+|
T Consensus        81 ~D~g~---------------------------~~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          81 VSENG---------------------------SPVEEPMEITINVID  100 (100)
T ss_dssp             EESSS---------------------------CBCSCCEEEEEEEEC
T ss_pred             EECCC---------------------------CcEEeEEEEEEEEeC
Confidence            99998                           788999999999987

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=9e-15  Score=113.22  Aligned_cols=90  Identities=22%  Similarity=0.347  Sum_probs=78.7

Q ss_pred             EEEEcCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCC-----cccEEEeCCCceEEEcccCCcccccCCCceEEEEEEE
Q psy11780        185 VTRVSEDVPVGTSVLQVKAVDGDRGINNKILYSISSGS-----QGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKV  259 (383)
Q Consensus       185 ~~~v~E~~~~gt~v~~v~A~D~D~~~n~~i~y~i~~~~-----~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a  259 (383)
                      .+.|+||.+ |..+..+.+.|.|.+.|+.+.|+|.+..     .++|.||+.+|.|+++++||||....    |.|.|.|
T Consensus         8 ~v~V~EN~~-~~~~~~i~~~d~D~~~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~LDrE~~~~----y~l~V~A   82 (102)
T d1ncia_           8 PINLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIAR----FHLRAHA   82 (102)
T ss_dssp             CEEEETTCC-CCSSEEEEECCBGGGGTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSE----EEEEEEE
T ss_pred             CEEEeCCCC-CCEeEEEEEEeCCCCCCceEEEEEecCCCCCCcccceeccCCCCcEEEeeecchhcCcc----eEEEEEE
Confidence            457999987 5556678888999888999999998532     46899999999999999999999987    9999999


Q ss_pred             EeCCCCCCCCCCCceeEEEEEeeecccccccCCCCceEEEEEEEEee
Q psy11780        260 TEESKTVQPAPTAKTEVTIIITDVTEESKTVQPAPTAKTEVTIIITD  306 (383)
Q Consensus       260 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~v~I~V~D  306 (383)
                      +|.++                           +.++++++|.|+|+|
T Consensus        83 ~D~g~---------------------------~~~~~~~~v~I~V~D  102 (102)
T d1ncia_          83 VDING---------------------------NQVENPIDIVINVID  102 (102)
T ss_dssp             ECTTS---------------------------CBSSCCEEEEEEEEC
T ss_pred             EECCC---------------------------CceeeeEEEEEEEeC
Confidence            99988                           778899999999987

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.51  E-value=4.6e-16  Score=121.75  Aligned_cols=106  Identities=15%  Similarity=0.103  Sum_probs=79.3

Q ss_pred             CCCCCeEEeCCCeeEEEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeE-EEEEEEeeeCCCCC
Q psy11780         37 GNRAPRFIIDEQTEIVIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVML-KVVYHLENVDGDEK  115 (383)
Q Consensus        37 ~Dn~P~F~~~~~~~~~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~-~v~y~i~~~~~~~~  115 (383)
                      |||+|+|.   +..  ++|.|  +.+.+.   .|.|+|+|.++                    |+ .++|+|..   ...
T Consensus         1 NDNaP~f~---~~~--~~v~e--~~~~~~---~v~AtD~D~~~--------------------n~~~~~~~l~~---~~~   47 (107)
T d1l3wa5           1 NDNGPVPS---PRV--FTMCD--QNPEPQ---VLTISDADIPP--------------------NTYPYKVSLSH---GSD   47 (107)
T ss_dssp             CCSCCCBS---CCC--EEECS--SSCCCE---EEEBCCSSCTT--------------------TTCCCCCBCCS---CSS
T ss_pred             CCCCCccC---CCE--EEEEe--cCCCce---eEEEEcCccCc--------------------cceeEeeeeec---ccc
Confidence            69999997   544  46788  777665   47899999853                    33 46787742   334


Q ss_pred             CcEEEEeecceEEEEEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEEcCCCCCeEe
Q psy11780        116 DLFSISTVNGKGVIKLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQDVEDQPPEFV  180 (383)
Q Consensus       116 ~~F~I~~~t~~G~I~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~DvNDn~P~f~  180 (383)
                      ..|.+....+ |.+...++||+|....|.|.|.|+|+|+|    +.+++++|+|.|.|||+|.|.
T Consensus        48 ~~~~~~~~~~-~~~~~~~~ld~e~~~~y~l~V~a~D~G~p----~~~~tv~V~V~Dc~dn~~~c~  107 (107)
T d1l3wa5          48 LTWKAELDSK-GTSMLLSPTQQLKKGDYSIYVLLSDAQNN----PQLTVVNATVCSCEGKAIKCQ  107 (107)
T ss_dssp             SSCBCCBCTT-SSEEEEBCSSCCCSSCBCCEEECCSSSCC----CEEEECCEEECSCSSSCCCCC
T ss_pred             cccccccccc-eeeeeeeccccccceeEEEEEEEEeCCCC----ceEEEEEEEEEEeeCCcCccC
Confidence            5566654432 45556689999999999999999999886    235679999999999999863

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.48  E-value=5.6e-14  Score=108.24  Aligned_cols=92  Identities=26%  Similarity=0.328  Sum_probs=76.2

Q ss_pred             EEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeeeCCC--CCCcEEEEeecceEEEE
Q psy11780         53 IRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENVDGD--EKDLFSISTVNGKGVIK  130 (383)
Q Consensus        53 ~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~~~~--~~~~F~I~~~t~~G~I~  130 (383)
                      ++|+|  |.+ |.....+.+.|.|.+                    .|+.+.|+|.....+  +.++|.|++.+  |.|+
T Consensus         7 i~v~E--N~~-~~~~~~v~~~~~D~~--------------------~n~~i~Y~i~~~~~~~~~~~~F~Id~~t--G~I~   61 (100)
T d1l3wa1           7 IKVSE--NER-GPFPKRLVQIKSNKD--------------------RFNKVYYSITGQGADNPPQGVFRIEWET--GWML   61 (100)
T ss_dssp             EEEES--SCC-SSSCEEEEECCCSGG--------------------GSSCEEEEEEEBTTTBSSTTSEEECTTT--CEEE
T ss_pred             EEEeC--CCC-CCCCEEEEEEECCCC--------------------CCCcEEEEEEeCCCCCCccccEEEeCCC--CEEE
Confidence            67889  654 666678888888873                    467999999764332  34689999998  9999


Q ss_pred             EcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEE
Q psy11780        131 LIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD  171 (383)
Q Consensus       131 ~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~D  171 (383)
                      ++++||||..++|.|.|.|+|.|++  .+++++.|+|+|+|
T Consensus        62 ~~~~lDrE~~~~y~l~V~a~D~g~~--~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          62 VTRPLDREEYDKYVLSSHAVSENGS--PVEEPMEITINVID  100 (100)
T ss_dssp             ECSCCCTTTCCEEEEEEEEEESSSC--BCSCCEEEEEEEEC
T ss_pred             EeeecccccCCEEEEEEEEEECCCC--cEEeEEEEEEEEeC
Confidence            9999999999999999999999876  57889999999987

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.9e-14  Score=110.27  Aligned_cols=93  Identities=26%  Similarity=0.360  Sum_probs=76.3

Q ss_pred             EEEEecCCCCCCCeEEEEEEEEcCCCCceEEEEEccccceEEEeecceeEEEEEEEeee--CCCCCCcEEEEeecceEEE
Q psy11780         52 VIRLKEGPDTPAGTFIYRLRGADPDGDVLTFGVQGHGHDVIRIENLNVMLKVVYHLENV--DGDEKDLFSISTVNGKGVI  129 (383)
Q Consensus        52 ~~~v~E~~~~~~g~~i~~v~A~D~D~~~~~~~~~~~~~~~~~i~~~~~~~~v~y~i~~~--~~~~~~~F~I~~~t~~G~I  129 (383)
                      .++|+|  |.+ |..+..+.+.|.|.+                    .|+.+.|+|...  +.++.++|.|++.+  |.|
T Consensus         8 ~v~V~E--N~~-~~~~~~i~~~d~D~~--------------------~n~~v~Y~i~~~~~~~~~~~~F~Id~~t--G~i   62 (102)
T d1ncia_           8 PINLPE--NSR-GPFPQELVRIRSGRD--------------------KNLSLRYSVTGPGADQPPTGIFIINPIS--GQL   62 (102)
T ss_dssp             CEEEET--TCC-CCSSEEEEECCBGGG--------------------GTSCCEEEEESBTTTBSSTTSEEECTTT--CEE
T ss_pred             CEEEeC--CCC-CCEeEEEEEEeCCCC--------------------CCceEEEEEecCCCCCCcccceeccCCC--CcE
Confidence            467899  776 556667888787763                    366899999642  34456799999988  999


Q ss_pred             EEcccCCCCCCcEEEEEEEEEeCCCCCCCCeeEEEEEEEEEE
Q psy11780        130 KLIGKLDYENKFLYQLKILAVDRSNNDRRNTGTAAILVKVQD  171 (383)
Q Consensus       130 ~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~~~~v~I~V~D  171 (383)
                      +++++||||+...|.|.|.|+|.+++  .++++++|.|+|+|
T Consensus        63 ~~~~~LDrE~~~~y~l~V~A~D~g~~--~~~~~~~v~I~V~D  102 (102)
T d1ncia_          63 SVTKPLDRELIARFHLRAHAVDINGN--QVENPIDIVINVID  102 (102)
T ss_dssp             EECSCCCTTTCSEEEEEEEEECTTSC--BSSCCEEEEEEEEC
T ss_pred             EEeeecchhcCcceEEEEEEEECCCC--ceeeeEEEEEEEeC
Confidence            99999999999999999999999876  56788999999987

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.27  E-value=1.6  Score=31.43  Aligned_cols=46  Identities=11%  Similarity=0.122  Sum_probs=31.9

Q ss_pred             eEEEEEecC----CcccEEEeCCCceEEEcccCCcccccCCCceEEEEEEEEeCCC
Q psy11780        213 KILYSISSG----SQGIFDIDPNTGNIFTLKELDRESATSNNGAYILEIKVTEESK  264 (383)
Q Consensus       213 ~i~y~i~~~----~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~y~l~V~a~D~~~  264 (383)
                      .++|++...    -..|..+|+.+|.+.-.-.-+..      +.|.+.|+|+|.++
T Consensus        32 ~~t~~~~~~~g~~LPsWl~fd~~tg~~~GtP~~~~~------G~~~i~vtAtD~~~   81 (103)
T d1u2ca1          32 GEIIKVSAAGKEALPSWLHWDPHSHILEGLPLDTDK------GVHYISVSAARLGA   81 (103)
T ss_dssp             TEEEEEEETTSSSCCTTEEEETTTTEEEECCCGGGC------EEEEEEEEEEEECT
T ss_pred             ccEEEEEecCCCCCCccEEEeccCCEEEEccCCCCc------eEEEEEEEEEeCCC
Confidence            356766422    16899999999998754332222      23999999999876