Psyllid ID: psy11809

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHVPEFSIGFTDLSLRPCKETVVNIFHRASLIK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccEEEEcccEEEEEcccccccccccccccccccccccccccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHccccEEEEEccHHHccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEEEcccEEEEEccccccEcccccEEEEcccccccccccEEEEEEEccHHcc
Coil and Loop (DISEMBL)
LAQFLLIRAVELdergrwteSLTFYQDGVTELLKHVRglsnkgdqqKIRDKIETYINRAEVLKGKldekkkmgNYHEQIEIANNEKGVTYEKLFGRFldenveqidvtdpyihnkhqCYNFLQFCELAIKNcknvkrinllttyadrpqhsnktaRVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVikigrgldifchvpefsigftdlslrpcketVVNIFHRASLIK
Flexible Loop (DISEMBL)
LAQFLLIRAveldergrwteSLTFYQDGVTELLKHvrglsnkgdqqkirdkIETYINRAevlkgkldekkkMGNYHEQieiannekgvtYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLttyadrpqhsnktarvkqeENLKQLQESLRKMKITLNinysntlhdreIVLSNDWVIKIGRGLDIFCHVPEFSIgftdlslrpcKETVVNIfhraslik
Low Complexity Region (SEG)
LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHVPEFSIGFTDLSLRPCKETVVNIFHRASLIK
Disordered region (IsUnstruct)
***FLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSN*****KIRDKIETYINRAEVLKGKLD****MGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYA**************************KMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHVPEFSIGFTDLSLRPCKETVVNIFHRA****
Disordered Region (DISOPRED)
*AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVR*************KIETYINRAE************************EKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADR**************NLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHVPEFSIGFTDLSLRPCKETVVNIFHRAS***
Disordered Region (DISEMBL)
LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHVPEFSIGFTDLSLRPCKETVVNIFHRASLIK
Disordered Region (DISPRO)
LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHVPEFSIGFTDLSLRPCKETVVNIFHRAS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKxxxxxxxxxxxxxxxxxxxxxGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTAxxxxxxxxxxxxxxxxxxxxxLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHVPEFSIGFTDLSLRPCKETVVNIFHRASLIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q8WV92	249	MIT domain-containing pro	yes	N/A	0.945	0.911	0.440	5e-52
Q5I0J5	249	MIT domain-containing pro	yes	N/A	0.941	0.907	0.442	1e-51
Q8VDV8	249	MIT domain-containing pro	yes	N/A	0.941	0.907	0.438	5e-50

>sp|Q8WV92|MITD1_HUMAN MIT domain-containing protein 1 OS=Homo sapiens GN=MITD1 PE=1 SV=1

 Score =  204 bits (518), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 104/236 (44%), Positives = 155/236 (65%), Gaps = 9/236 (3%)

Query: 2   AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
           A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G  +   +  +R+KI  Y++RAE 
Sbjct: 15  AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 74

Query: 62  LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 121
           +K  LD++K+ G YH+QI+I  N  G +YE LF  +L+E V ++ + DPYI + HQ YNF
Sbjct: 75  IKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNF 134

Query: 122 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 181
           L+FCE+ IK    VK I+LLT+  +         +V+Q   L++++ESLR   + L + Y
Sbjct: 135 LRFCEMLIKRPCKVKTIHLLTSLDE------GIEQVQQSRGLQEIEESLRSHGVLLEVQY 188

Query: 182 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFHR 235
           S+++HDREI  +N W+IKIGRGLD F   P+  FS+G+ D  LRPC ET V+IFH+
Sbjct: 189 SSSIHDREIRFNNGWMIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFHK 243

May play a role in endosomal protein transport.
Homo sapiens (taxid: 9606)

>sp|Q5I0J5|MITD1_RAT MIT domain-containing protein 1 OS=Rattus norvegicus GN=Mitd1 PE=2 SV=1

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/235 (44%), Positives = 149/235 (63%), Gaps = 9/235 (3%)

Query: 2   AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
           A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G      +  +R KI  Y++RAE 
Sbjct: 15  AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRSTLRTKISGYMDRAEN 74

Query: 62  LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 121
           +K  LD++K+ G YH+QI+I  N  G +YE LF  +L E V ++ + DPYI   HQ YNF
Sbjct: 75  IKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLQETVTEVWIEDPYIRQTHQLYNF 134

Query: 122 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 181
           L+FCE+ IK    V+ I+LLT+              +Q   L+++++SLR   + L INY
Sbjct: 135 LRFCEMLIKKPCKVRTIHLLTS------GDEGFGNTQQSSGLEEIKQSLRSHGVVLEINY 188

Query: 182 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 234
           S+++HDREI  +N W+IKIGRGLD F   P+  FS+G+ DL LRPC ET V+IFH
Sbjct: 189 SSSIHDREIRFNNGWMIKIGRGLDYF-KKPQGRFSLGYCDLDLRPCHETTVDIFH 242

May play a role in endosomal protein transport.

Rattus norvegicus (taxid: 10116)

>sp|Q8VDV8|MITD1_MOUSE MIT domain-containing protein 1 OS=Mus musculus GN=Mitd1 PE=1 SV=1

 Score =  197 bits (501), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 103/235 (43%), Positives = 149/235 (63%), Gaps = 9/235 (3%)

Query: 2   AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
           A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G      +  +R KI  Y++RAE 
Sbjct: 15  AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN 74

Query: 62  LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 121
           +K  LD++K+ G YH+QI+I  N  G +YE LF  +L E V ++ + DPYI   HQ YNF
Sbjct: 75  IKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLHETVTEVWIEDPYIRQTHQLYNF 134

Query: 122 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 181
           L+FCE+ IK    V+ I+LLT+  +           +Q   L+++++SL    + L INY
Sbjct: 135 LRFCEMLIKKPCKVRTIHLLTSGYE------GLGNTQQSSGLEEIKQSLGSHGVVLEINY 188

Query: 182 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 234
           S+++HDREI  +N W+IKIGRGLD F   P+  FS+G+ DL LRPC ET V+IFH
Sbjct: 189 SSSIHDREIRFNNGWMIKIGRGLDYF-KKPQGRFSLGYYDLDLRPCHETTVDIFH 242

May play a role in endosomal protein transport.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
443692449	245	hypothetical protein CAPTEDRAFT_154892 [	0.937	0.918	0.454	1e-51
50730418	250	PREDICTED: MIT domain-containing protein	0.916	0.88	0.467	3e-51
327289590	239	PREDICTED: MIT domain-containing protein	0.941	0.945	0.463	3e-51
321471517	245	hypothetical protein DAPPUDRAFT_302508 [	0.941	0.922	0.45	9e-51
297266610	274	PREDICTED: MIT domain-containing protein	0.945	0.828	0.444	1e-50
156403111	234	predicted protein [Nematostella vectensi	0.912	0.935	0.463	1e-50
403301339	274	PREDICTED: MIT domain-containing protein	0.945	0.828	0.440	2e-50
355565930	249	hypothetical protein EGK_05603 [Macaca m	0.945	0.911	0.444	2e-50
410035475	274	PREDICTED: uncharacterized protein LOC45	0.945	0.828	0.440	2e-50
426336557	274	PREDICTED: MIT domain-containing protein	0.945	0.828	0.440	2e-50

>gi|443692449|gb|ELT94043.1| hypothetical protein CAPTEDRAFT_154892 [Capitella teleta] gi|443719275|gb|ELU09533.1| hypothetical protein CAPTEDRAFT_168922 [Capitella teleta]

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/231 (45%), Positives = 146/231 (63%), Gaps = 6/231 (2%)

Query: 5   LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKG 64
           L+ RAVELD  GR+ ESLTFYQ G+ +LL   +G+++   +   R K+E Y+ RAE LK 
Sbjct: 9   LITRAVELDAEGRYDESLTFYQTGIQQLLAASKGITDPNKKIHFRKKVEEYMERAEKLKS 68

Query: 65  KLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQF 124
            +   K+ G +HEQI+IA N  G  Y +LFGR LD  +  ++V DPYI N HQ  NFL+F
Sbjct: 69  YICRIKEAGKFHEQIQIAANATGYGYRRLFGRLLDPMLTSVEVEDPYIRNHHQILNFLRF 128

Query: 125 CELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNT 184
           CE+ + +   VK I LLT   + P     T + +Q   L+++ +SL++  I L++ YS+T
Sbjct: 129 CEVLVNSEAQVKSITLLTGRDENP-----TQQREQHSKLEEIAKSLQQRNIALSVKYSST 183

Query: 185 LHDREIVLSNDWVIKIGRGLDIF-CHVPEFSIGFTDLSLRPCKETVVNIFH 234
           LHDREI  +N W+ KIGRGLD F     +F++G  DL LR C  T V+IFH
Sbjct: 184 LHDREIRFNNGWIAKIGRGLDYFKAPAGKFALGQFDLDLRQCHATTVDIFH 234

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|50730418|ref|XP_416894.1| PREDICTED: MIT domain-containing protein 1 [Gallus gallus]

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/229 (46%), Positives = 152/229 (66%), Gaps = 9/229 (3%)

Query: 8   RAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLD 67
           RAVELD   R+ ESL  YQ+G+  LL+ V+G  ++  +Q+ R KI  Y+ RAE +K  ++
Sbjct: 22  RAVELDLASRFQESLVCYQEGIDLLLQVVKGTKDEAKKQRYRQKISEYMTRAEDIKKHIE 81

Query: 68  EKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCEL 127
           ++K+ G YH+QI+I  N  G  YEKLF  +L E V ++ V DPYI N HQ YNFL+FCE+
Sbjct: 82  KEKQDGKYHKQIKIEENATGFGYEKLFQEYLTEIVSEVWVEDPYIRNVHQLYNFLRFCEM 141

Query: 128 AIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHD 187
            +K    V+ I+LLT+Y +         R +Q   L+++++SLR   ITLN+ +S+++HD
Sbjct: 142 LVKGPCKVRTIHLLTSYDE------GNGRNQQTSGLEEIKQSLRNHGITLNVAFSSSIHD 195

Query: 188 REIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 234
           REI  +N W+IKIGRGLD F   P+  FSIG+ D  LRPC ET V++FH
Sbjct: 196 REIRFNNGWMIKIGRGLDYF-KKPQGRFSIGYCDFDLRPCHETTVDVFH 243

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327289590|ref|XP_003229507.1| PREDICTED: MIT domain-containing protein 1-like [Anolis carolinensis]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 109/235 (46%), Positives = 155/235 (65%), Gaps = 9/235 (3%)

Query: 2   AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
           A  +L RAVELDE  R+ ESL  YQ+G+  LL+ ++   ++  +   RDKI  Y+NRAE 
Sbjct: 5   AVSVLKRAVELDEASRFQESLVCYQEGIALLLQVLKVTKDERKKAHYRDKITHYMNRAED 64

Query: 62  LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 121
           +K  L ++K+ G YH+QI+I  N KG +YEKLF  +L E V ++ V DPYI + HQ YNF
Sbjct: 65  IKEYLKKEKEDGKYHKQIKIEENTKGFSYEKLFQEYLSETVTEVWVEDPYIRHVHQLYNF 124

Query: 122 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 181
           L+FCE+ +K    VKRI+LLT+      H     R +Q  +L+++++SL    +TL+++Y
Sbjct: 125 LRFCEMLVKGRCKVKRIHLLTS------HDEGNGRTQQINSLEEIRQSLEDFGVTLDVSY 178

Query: 182 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 234
           S+++HDREI  +N W IKIGRGLD F   P+  F +G+ D  LRPC ET V+IFH
Sbjct: 179 SSSIHDREIRFNNGWTIKIGRGLDYF-KKPQGRFCLGYCDFDLRPCHETTVDIFH 232

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321471517|gb|EFX82490.1| hypothetical protein DAPPUDRAFT_302508 [Daphnia pulex]

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 108/240 (45%), Positives = 157/240 (65%), Gaps = 14/240 (5%)

Query: 2   AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNK-GDQQKIRDKIETYINRAE 60
           A  +L RAVELD+  R+TESL  YQ+G+  L++ ++    + G + ++R ++  Y++RAE
Sbjct: 12  AASVLKRAVELDKAKRFTESLVCYQEGLQLLMEALKAKGQEDGRRAELRKRVVDYMDRAE 71

Query: 61  VLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYN 120
            LK  ++ +K+ G YHE+IEI  N  G +Y+K+ GRFLDE+V ++++ DPYI + HQ YN
Sbjct: 72  FLKKHVENEKEAGKYHEKIEITANSVGYSYQKVLGRFLDEHVTRVEIEDPYIRSIHQVYN 131

Query: 121 FLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNIN 180
            L+  EL + NC+N+K I LLT     P +        Q+E L +L++SL K K+ L + 
Sbjct: 132 LLRLSELLVSNCRNLKSIFLLT--GREPGN--------QQEMLDELKQSLAKHKVVLTVE 181

Query: 181 YSNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFHRASL 238
           YS TLHDREI L N WVIKIGRGLD F   PE  FS+G+ D  LR C  T ++IFH +++
Sbjct: 182 YSTTLHDREIRLDNGWVIKIGRGLDYF-RPPEGKFSLGYCDFDLRQCHATTIDIFHSSTV 240

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|297266610|ref|XP_001103841.2| PREDICTED: MIT domain-containing protein 1-like isoform 1 [Macaca mulatta]

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/236 (44%), Positives = 156/236 (66%), Gaps = 9/236 (3%)

Query: 2   AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
           A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G  +   +  +R+KI  Y++RAE 
Sbjct: 40  AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 99

Query: 62  LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 121
           +K  L+++K+ G YH+QI+I  N  G +YE LF  +L+E V ++ + DPYI + HQ YNF
Sbjct: 100 IKQHLEQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNF 159

Query: 122 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 181
           L+FCEL IK    VK I+LLT+  +       T +V+Q   L++++ESLR   + L + Y
Sbjct: 160 LRFCELLIKRPCKVKTIHLLTSLDE------GTEQVQQSRGLQEIEESLRSHGVLLEVRY 213

Query: 182 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFHR 235
           S+++HDREI  +N W+IKIGRGLD F   P+  FS+G+ D  LRPC ET V+IFH+
Sbjct: 214 SSSIHDREIRFNNGWMIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFHK 268

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156403111|ref|XP_001639933.1| predicted protein [Nematostella vectensis] gi|156227064|gb|EDO47870.1| predicted protein [Nematostella vectensis]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/231 (46%), Positives = 155/231 (67%), Gaps = 12/231 (5%)

Query: 5   LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKG 64
           +L RAVELDE   ++E+L  YQ+G+  LL+ V+  +N+  + + ++++ +Y  RAE LK 
Sbjct: 9   VLKRAVELDEGKSYSEALVCYQEGIGLLLQVVKSTTNEITKTRYKEQLNSYFERAENLKR 68

Query: 65  KLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQF 124
            + E+K+ G YHEQI+I +  KG +Y K+FGR+LDENVE++ + DPYI   HQ YNFL+ 
Sbjct: 69  TVKEQKEAGKYHEQIQIKDGSKGYSYSKIFGRYLDENVEEVTIEDPYIRGIHQIYNFLRL 128

Query: 125 CELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNT 184
           CEL + +  +V+RINL+T   D P          Q++ LK+L   L++  I L ++YS+T
Sbjct: 129 CELFVLH-GSVRRINLITGLDDDPS--------TQQQRLKELTSDLKRHNIDLQVDYSHT 179

Query: 185 LHDREIVLSNDWVIKIGRGLDIFCHVP--EFSIGFTDLSLRPCKETVVNIF 233
           LHDREI  SN WVIKIGRGLD F   P  +FSIG+ + +LR C ET ++IF
Sbjct: 180 LHDREIRFSNGWVIKIGRGLD-FYKKPRGKFSIGYCNYNLRECHETTIDIF 229

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|403301339|ref|XP_003941351.1| PREDICTED: MIT domain-containing protein 1 [Saimiri boliviensis boliviensis]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/236 (44%), Positives = 156/236 (66%), Gaps = 9/236 (3%)

Query: 2   AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
           A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G  +   +  +R++I  Y++RAE 
Sbjct: 40  AVTVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLRERISKYMDRAEN 99

Query: 62  LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 121
           +K  LD++K+ G YH+QI+I  N  G +YE LF  +L+E V ++ + DPYI + HQ YNF
Sbjct: 100 IKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNF 159

Query: 122 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 181
           L+FCE+ IK    VK I+LLT+  +       + +V+Q   LK+++ESLR   + L + Y
Sbjct: 160 LRFCEMLIKRPCKVKTIHLLTSLDE------GSEQVQQSRGLKEIEESLRSHGVLLEVQY 213

Query: 182 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFHR 235
           S+++HDREI  +N W+IKIGRGLD F   P+  FS+G+ D  LRPC ET V+IFH+
Sbjct: 214 SSSIHDREIRFNNGWMIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFHK 268

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355565930|gb|EHH22359.1| hypothetical protein EGK_05603 [Macaca mulatta] gi|355760594|gb|EHH61695.1| hypothetical protein EGM_19738 [Macaca fascicularis] gi|380789563|gb|AFE66657.1| MIT domain-containing protein 1 [Macaca mulatta] gi|383412497|gb|AFH29462.1| MIT domain-containing protein 1 [Macaca mulatta]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/236 (44%), Positives = 156/236 (66%), Gaps = 9/236 (3%)

Query: 2   AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
           A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G  +   +  +R+KI  Y++RAE 
Sbjct: 15  AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 74

Query: 62  LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 121
           +K  L+++K+ G YH+QI+I  N  G +YE LF  +L+E V ++ + DPYI + HQ YNF
Sbjct: 75  IKQHLEQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNF 134

Query: 122 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 181
           L+FCEL IK    VK I+LLT+  +       T +V+Q   L++++ESLR   + L + Y
Sbjct: 135 LRFCELLIKRPCKVKTIHLLTSLDE------GTEQVQQSRGLQEIEESLRSHGVLLEVRY 188

Query: 182 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFHR 235
           S+++HDREI  +N W+IKIGRGLD F   P+  FS+G+ D  LRPC ET V+IFH+
Sbjct: 189 SSSIHDREIRFNNGWMIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFHK 243

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410035475|ref|XP_515647.3| PREDICTED: uncharacterized protein LOC459439 isoform 4 [Pan troglodytes]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/236 (44%), Positives = 155/236 (65%), Gaps = 9/236 (3%)

Query: 2   AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
           A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G  +   +  +R+KI  Y++RAE 
Sbjct: 40  AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 99

Query: 62  LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 121
           +K  LD++K+ G YH+QI+I  N  G +YE LF  +L+E V ++ + DPYI + HQ YNF
Sbjct: 100 IKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNF 159

Query: 122 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 181
           L+FCE+ IK    VK I+LLT+  +         +V+Q   L++++ESLR   + L + Y
Sbjct: 160 LRFCEMLIKRPCKVKTIHLLTSLDE------GIEQVQQSRGLQEIEESLRSHGVLLEVQY 213

Query: 182 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFHR 235
           S+++HDREI  +N W+IKIGRGLD F   P+  FS+G+ D  LRPC ET V+IFH+
Sbjct: 214 SSSIHDREIRFNNGWMIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFHK 268

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426336557|ref|XP_004031535.1| PREDICTED: MIT domain-containing protein 1 [Gorilla gorilla gorilla] gi|119622291|gb|EAX01886.1| hypothetical protein BC018453, isoform CRA_c [Homo sapiens]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/236 (44%), Positives = 155/236 (65%), Gaps = 9/236 (3%)

Query: 2   AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
           A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G  +   +  +R+KI  Y++RAE 
Sbjct: 40  AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 99

Query: 62  LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 121
           +K  LD++K+ G YH+QI+I  N  G +YE LF  +L+E V ++ + DPYI + HQ YNF
Sbjct: 100 IKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNF 159

Query: 122 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 181
           L+FCE+ IK    VK I+LLT+  +         +V+Q   L++++ESLR   + L + Y
Sbjct: 160 LRFCEMLIKRPCKVKTIHLLTSLDE------GIEQVQQSRGLQEIEESLRSHGVLLEVQY 213

Query: 182 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFHR 235
           S+++HDREI  +N W+IKIGRGLD F   P+  FS+G+ D  LRPC ET V+IFH+
Sbjct: 214 SSSIHDREIRFNNGWMIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFHK 268

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
UNIPROTKB|F1P5I2	252	MITD1 "Uncharacterized protein	0.912	0.869	0.478	6.5e-51
UNIPROTKB|Q8WV92	249	MITD1 "MIT domain-containing p	0.941	0.907	0.447	5.8e-50
RGD|1307700	249	Mitd1 "MIT, microtubule intera	0.925	0.891	0.459	3.2e-49
MGI|MGI:1916278	249	Mitd1 "MIT, microtubule intera	0.925	0.891	0.446	9.8e-48
UNIPROTKB|F1STE3	249	MITD1 "Uncharacterized protein	0.912	0.879	0.430	2e-47
UNIPROTKB|E2RPI7	249	MITD1 "Uncharacterized protein	0.941	0.907	0.432	4.2e-47
UNIPROTKB|E1BGA2	248	E1BGA2 "Uncharacterized protei	0.920	0.891	0.424	1.1e-46
ZFIN|ZDB-GENE-040426-923	246	mitd1 "MIT, microtubule intera	0.925	0.902	0.413	1.5e-44
UNIPROTKB|B8ZZL5	197	MITD1 "MIT domain-containing p	0.483	0.588	0.413	5.7e-36
FB|FBgn0050398	267	CG30398 [Drosophila melanogast	0.912	0.820	0.301	1.8e-23

UNIPROTKB|F1P5I2 MITD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 110/230 (47%), Positives = 155/230 (67%)

Query:     8 RAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLD 67
             RAVELD   R+ ESL  YQ+G+  LL+ V+G  ++  +Q+ R KI  Y+ RAE +K  ++
Sbjct:    24 RAVELDLASRFQESLVCYQEGIDLLLQVVKGTKDEAKKQRYRQKISEYMTRAEDIKKHIE 83

Query:    68 EKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCEL 127
             ++K+ G YH+QI+I  N  G  YEKLF  +L E V ++ V DPYI N HQ YNFL+FCE+
Sbjct:    84 KEKQDGKYHKQIKIEENATGFGYEKLFQEYLTEIVSEVWVEDPYIRNVHQLYNFLRFCEM 143

Query:   128 AIKN-CKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLH 186
              +K  CK V+ I+LLT+Y +     N   R +Q   L+++++SLR   ITLN+ +S+++H
Sbjct:   144 LVKGPCK-VRTIHLLTSYDE----GN--GRNQQTSGLEEIKQSLRNHGITLNVAFSSSIH 196

Query:   187 DREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 234
             DREI  +N W+IKIGRGLD F   P+  FSIG+ D  LRPC ET V++FH
Sbjct:   197 DREIRFNNGWMIKIGRGLDYF-KKPQGRFSIGYCDFDLRPCHETTVDVFH 245

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|Q8WV92 MITD1 "MIT domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 106/237 (44%), Positives = 158/237 (66%)

Query:     2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
             A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G  +   +  +R+KI  Y++RAE 
Sbjct:    15 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 74

Query:    62 LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 121
             +K  LD++K+ G YH+QI+I  N  G +YE LF  +L+E V ++ + DPYI + HQ YNF
Sbjct:    75 IKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNF 134

Query:   122 LQFCELAIKN-CKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNIN 180
             L+FCE+ IK  CK VK I+LLT+  +  +      +V+Q   L++++ESLR   + L + 
Sbjct:   135 LRFCEMLIKRPCK-VKTIHLLTSLDEGIE------QVQQSRGLQEIEESLRSHGVLLEVQ 187

Query:   181 YSNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFHR 235
             YS+++HDREI  +N W+IKIGRGLD F   P+  FS+G+ D  LRPC ET V+IFH+
Sbjct:   188 YSSSIHDREIRFNNGWMIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFHK 243

GO:0006810 "transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:2000695 "cytokinetic cell separation involved in cell cycle cytokinesis" evidence=IMP

GO:0019898 "extrinsic to membrane" evidence=IDA

GO:0000281 "cytokinesis after mitosis" evidence=IMP

GO:0030496 "midbody" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

RGD|1307700 Mitd1 "MIT, microtubule interacting and transport, domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 107/233 (45%), Positives = 152/233 (65%)

Query:     5 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKG 64
             +L RAVELD   R+ ++L  YQ+G+  LL+ ++G      +  +R KI  Y++RAE +K 
Sbjct:    18 VLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRSTLRTKISGYMDRAENIKK 77

Query:    65 KLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQF 124
              LD++K+ G YH+QI+I  N  G +YE LF  +L E V ++ + DPYI   HQ YNFL+F
Sbjct:    78 YLDQEKEDGKYHKQIKIEENATGFSYESLFREYLQETVTEVWIEDPYIRQTHQLYNFLRF 137

Query:   125 CELAIKN-CKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSN 183
             CE+ IK  CK V+ I+LLT+  D     N     +Q   L+++++SLR   + L INYS+
Sbjct:   138 CEMLIKKPCK-VRTIHLLTS-GDEG-FGN----TQQSSGLEEIKQSLRSHGVVLEINYSS 190

Query:   184 TLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 234
             ++HDREI  +N W+IKIGRGLD F   P+  FS+G+ DL LRPC ET V+IFH
Sbjct:   191 SIHDREIRFNNGWMIKIGRGLDYF-KKPQGRFSLGYCDLDLRPCHETTVDIFH 242

GO:0000281 "cytokinesis after mitosis" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=ISO

GO:0030496 "midbody" evidence=IEA;ISO

GO:0031902 "late endosome membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:2000695 "cytokinetic cell separation involved in cell cycle cytokinesis" evidence=ISO

MGI|MGI:1916278 Mitd1 "MIT, microtubule interacting and transport, domain containing 1" [Mus musculus (taxid:10090)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 104/233 (44%), Positives = 150/233 (64%)

Query:     5 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKG 64
             +L RAVELD   R+ ++L  YQ+G+  LL+ ++G      +  +R KI  Y++RAE +K 
Sbjct:    18 VLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKK 77

Query:    65 KLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQF 124
              LD++K+ G YH+QI+I  N  G +YE LF  +L E V ++ + DPYI   HQ YNFL+F
Sbjct:    78 YLDQEKEDGKYHKQIKIEENATGFSYESLFREYLHETVTEVWIEDPYIRQTHQLYNFLRF 137

Query:   125 CELAIKN-CKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSN 183
             CE+ IK  CK V+ I+LLT+  +           +Q   L+++++SL    + L INYS+
Sbjct:   138 CEMLIKKPCK-VRTIHLLTSGYEG------LGNTQQSSGLEEIKQSLGSHGVVLEINYSS 190

Query:   184 TLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 234
             ++HDREI  +N W+IKIGRGLD F   P+  FS+G+ DL LRPC ET V+IFH
Sbjct:   191 SIHDREIRFNNGWMIKIGRGLDYF-KKPQGRFSLGYYDLDLRPCHETTVDIFH 242

GO:0000281 "cytokinesis after mitosis" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=ISO

GO:2000695 "cytokinetic cell separation involved in cell cycle cytokinesis" evidence=ISO

UNIPROTKB|F1STE3 MITD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 99/230 (43%), Positives = 152/230 (66%)

Query:     8 RAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLD 67
             RA+EL+   R+ ++L  YQ+G+  LL+ ++G  ++  +  +R +I  Y++RAE +K  LD
Sbjct:    21 RALELESESRYPQALVCYQEGIDLLLQVLKGTKDETKRCTLRKRISEYMDRAENIKKYLD 80

Query:    68 EKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCEL 127
             ++K+ G YH+QI+I  N  G +YE LF  +L E V ++ + DPYI + HQ YNFL+FCE+
Sbjct:    81 QEKEAGKYHKQIKIEENATGFSYESLFQEYLSETVTEVWIEDPYIRHTHQLYNFLRFCEM 140

Query:   128 AIKN-CKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLH 186
              +K  CK VK I+LLT+  +         + +Q   L++++ESLR   + L++ YS+++H
Sbjct:   141 LVKRPCK-VKTIHLLTSSEEG------IGKEQQSSGLQEIKESLRNHGVLLDLEYSSSIH 193

Query:   187 DREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 234
             DREI  +N W+IKIGRGLD F   P+  FS+G+ D  LRPC ET V+IFH
Sbjct:   194 DREIRFNNGWMIKIGRGLDYF-KKPQGRFSLGYCDFDLRPCHETTVDIFH 242

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|E2RPI7 MITD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 103/238 (43%), Positives = 159/238 (66%)

Query:     1 LAQFLLI-RAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRA 59
             +A F ++ RA+ELD   R+ ++L  YQ+G+  L++ +RG  +   ++ +R +I  Y+++A
Sbjct:    13 IAAFTVLKRAMELDSGSRYQQALVCYQEGIDLLMQVLRGTKDDTKKRNLRKQISGYMDKA 72

Query:    60 EVLKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCY 119
             E++K  LD++K+ G YH QI+I  N  G +YE LF ++L+E V ++ + DPYI   HQ Y
Sbjct:    73 EIVKKYLDQEKEDGKYHMQIKIEENATGFSYESLFQQYLNETVTEVWIQDPYIRQIHQLY 132

Query:   120 NFLQFCELAIKN-CKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLN 178
             NFL+FCE+ IK  CK VK I+LLT+  D  + S K    +Q   L+++++SL+   + L 
Sbjct:   133 NFLRFCEMLIKKPCK-VKTIHLLTSL-D--EGSGKQ---QQSSGLQEIKKSLQDHGVLLE 185

Query:   179 INYSNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 234
             + YS+++HDREI  +N W+IKIGRGLD F   P+  FS+G+ D  LRPC ET V+IFH
Sbjct:   186 LKYSSSVHDREIRFNNGWMIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFH 242

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|E1BGA2 E1BGA2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 99/233 (42%), Positives = 154/233 (66%)

Query:     5 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKG 64
             +L RA++L+   R  ++L  YQ+G+  LL+ ++G  ++  ++ +R  I  +++RAE LK 
Sbjct:    18 VLKRALDLESESRGPQALVCYQEGIDLLLQVLKGTKDETKKRNLRKIISDHMDRAEHLKK 77

Query:    65 KLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQF 124
             +LD++K+ G YH+QI+I  N  G +YE LF  +L E V ++ + DPYI + HQ YNFL+F
Sbjct:    78 RLDQEKEAGKYHKQIKIEENATGFSYESLFQEYLSETVTEVWIEDPYIRHTHQLYNFLRF 137

Query:   125 CELAIKN-CKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSN 183
             CE+ +K  CK VK I+LLT+  +       T +  Q   L+++++SLR   ++L + YS+
Sbjct:   138 CEMLVKRPCK-VKTIHLLTSLDEG------TGK-DQHSGLEEIKQSLRNHGVSLELEYSS 189

Query:   184 TLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 234
             ++HDREI  +N W+IKIGRGLD F   P+  FS+G+ D  LRPC ET V+IFH
Sbjct:   190 SIHDREIRFNNGWIIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFH 241

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

ZFIN|ZDB-GENE-040426-923 mitd1 "MIT, microtubule interacting and transport, domain containing 1" [Danio rerio (taxid:7955)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 96/232 (41%), Positives = 148/232 (63%)

Query:     5 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKG 64
             +L RAV+LD   R+ E+L  YQ+G+  LL  ++ + ++  +   R+KI+ Y+ RAE +K 
Sbjct:    16 VLKRAVQLDNCSRFQEALVCYQEGIQLLLDVLKAVKDEAKKMHYREKIKGYMERAEQIKE 75

Query:    65 KLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQF 124
                + K+ G YHEQI+IA++  G +YE LF  ++ + + ++ V DPY+ + HQ YNFL+F
Sbjct:    76 HTTKLKEEGKYHEQIKIADSSTGYSYESLFKPYITDGLTEVWVEDPYVRHVHQLYNFLRF 135

Query:   125 CELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNT 184
             CE+ +K    VK I+LLT+        ++ +  +Q   L ++++SL    I L+I YS+T
Sbjct:   136 CEMLLKCPSTVKTIHLLTS-------QDEDSSTQQSSALAEMKQSLLSKDICLDIQYSST 188

Query:   185 LHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 234
             +HDREI  +N W+IKIGRGLD F   P+  FS+G+ D  LR C ET V+IFH
Sbjct:   189 IHDREIRFNNGWIIKIGRGLDYF-KKPKGRFSVGYCDYDLRECHETTVDIFH 239

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B8ZZL5 MITD1 "MIT domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 48/116 (41%), Positives = 76/116 (65%)

Query:     2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
             A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G  +   +  +R+KI  Y++RAE 
Sbjct:    15 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 74

Query:    62 LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQ 117
             +K  LD++K+ G YH+QI+I  N  G +YE LF  +L+E V ++ + DPYI + HQ
Sbjct:    75 IKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQ 130

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

FB|FBgn0050398 CG30398 [Drosophila melanogaster (taxid:7227)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 69/229 (30%), Positives = 120/229 (52%)

Query:     6 LIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGK 65
             +I A++ ++ G   E++  Y++ + +L +      ++  +Q     ++ Y  RA+ L+ +
Sbjct:    21 IISALKCEQTGHIMEAILLYEESIFKLSQMADAEPSR--RQLCGKYLKMYEARAKQLRDQ 78

Query:    66 LDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFC 125
             +          + I I    +G +Y++LFG +LD+ V +  + +P++       N L F 
Sbjct:    79 VKGHLHTSRMLDHITIEQGARGRSYQRLFGPYLDDAVREAHLNEPHLTEPPHFRNLLNFF 138

Query:   126 ELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTL 185
             E+ +KNC+ +K I L T    RP   + TA   Q + L+Q+Q  L    I +N    ++L
Sbjct:   139 EVLVKNCRYLKYIRLTT----RP---DATAPKNQLQMLQQMQSDLAGGNIQMNFQMDDSL 191

Query:   186 HDREIVLSNDWVIKIGRGLDIFCHVP-EFSIGFTDLSLRPCKETVVNIF 233
             HDR+IVLS+  VIKIGRGL  F  +   +S+G  D   R C  T V+I+
Sbjct:   192 HDRKIVLSSGVVIKIGRGLHYFEPMEGSYSLGLCDFDFRKCLATEVDIW 240

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5I0J5	MITD1_RAT	No assigned EC number	0.4425	0.9416	0.9076	yes	N/A
Q8VDV8	MITD1_MOUSE	No assigned EC number	0.4382	0.9416	0.9076	yes	N/A
Q8WV92	MITD1_HUMAN	No assigned EC number	0.4406	0.9458	0.9116	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	240
cd02685	148	cd02685, MIT_C, MIT_C; domain found C-terminal to	8e-57
cd02683	77	cd02683, MIT_1, MIT: domain contained within Micro	3e-16
pfam04212	69	pfam04212, MIT, MIT (microtubule interacting and t	1e-11
cd02656	75	cd02656, MIT, MIT: domain contained within Microtu	5e-11
smart00745	77	smart00745, MIT, Microtubule Interacting and Traff	2e-09
cd02678	75	cd02678, MIT_VPS4, MIT: domain contained within Mi	2e-06
cd02684	75	cd02684, MIT_2, MIT: domain contained within Micro	4e-06

>gnl|CDD|239148 cd02685, MIT_C, MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins

 Score =  177 bits (451), Expect = 8e-57
 Identities = 67/154 (43%), Positives = 93/154 (60%), Gaps = 10/154 (6%)

Query: 84  NEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTT 143
           N  G +Y++LFG +LD+ V +I V DPYI N HQ  NFL+FCEL +K    +K I+L+T 
Sbjct: 1   NATGFSYDRLFGPYLDDGVTEITVEDPYIRNFHQIRNFLRFCELVVKPPCELKYIHLVTG 60

Query: 144 -YADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGR 202
              D  +        +Q E L+++++SL    +     +S+T+HDREI   N W+IKIGR
Sbjct: 61  EDEDNGK--------QQIEALEEIKQSLASHGVEFTWEFSDTIHDREIRTDNGWIIKIGR 112

Query: 203 GLDIFCHV-PEFSIGFTDLSLRPCKETVVNIFHR 235
           GLD F     +FS+G  D   RPCK T V+IFH 
Sbjct: 113 GLDYFKPPEGKFSLGNRDQDFRPCKATEVDIFHT 146

The function of this domain is unknown. Length = 148

>gnl|CDD|239146 cd02683, MIT_1, MIT: domain contained within Microtubule Interacting and Trafficking molecules

 Score = 70.5 bits (173), Expect = 3e-16
 Identities = 29/72 (40%), Positives = 52/72 (72%)

Query: 2  AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
          A+ +L RAVELD+ GR+ E+L  YQ+G+  L++ ++G  ++  ++ +R KI  Y++RAE 
Sbjct: 6  AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEA 65

Query: 62 LKGKLDEKKKMG 73
          +K +LD++K+ G
Sbjct: 66 IKKRLDQEKEDG 77

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear. Length = 77

>gnl|CDD|146707 pfam04212, MIT, MIT (microtubule interacting and transport) domain

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 2  AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
          A  L+ +AVE DE G + E+L  Y++ +  LL+ ++   +   ++ +R KI  Y++RAE 
Sbjct: 5  ALELVKKAVEADEAGNYEEALELYKEAIEYLLQALKYEPDPKRREALRQKIAEYLDRAEE 64

Query: 62 LKGKL 66
          LK  L
Sbjct: 65 LKELL 69

The MIT domain forms an asymmetric three-helix bundle and binds ESCRT-III (endosomal sorting complexes required for transport) substrates. Length = 69

>gnl|CDD|239121 cd02656, MIT, MIT: domain contained within Microtubule Interacting and Trafficking molecules

 Score = 56.9 bits (138), Expect = 5e-11
 Identities = 22/71 (30%), Positives = 44/71 (61%)

Query: 1  LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAE 60
           A+ L+ +AV+ DE G + E+L  Y++ +  LL+ ++       ++ +R K++ Y++RAE
Sbjct: 5  QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAE 64

Query: 61 VLKGKLDEKKK 71
           LK  L ++K+
Sbjct: 65 FLKELLKKQKQ 75

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear. Length = 75

>gnl|CDD|197854 smart00745, MIT, Microtubule Interacting and Trafficking molecule domain

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 20/68 (29%), Positives = 41/68 (60%)

Query: 2  AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
          A+ L+ +A++ DE G + E+L  Y+  +  LL+ ++  S+   ++ ++ K   Y++RAE 
Sbjct: 8  AKELISKALKADEAGNYEEALELYKKAIEYLLEGIKVESDSKRREALKAKAAEYLDRAEE 67

Query: 62 LKGKLDEK 69
          +K  L E+
Sbjct: 68 IKKSLLER 75

Length = 77

>gnl|CDD|239141 cd02678, MIT_VPS4, MIT: domain contained within Microtubule Interacting and Trafficking molecules

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 8  RAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLD 67
          +A+E D  G + E+L  YQ  +   +  ++   N   ++ IR K   Y++RAE LK  L 
Sbjct: 12 KAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEKLKEYLA 71

Query: 68 EKKK 71
          +K+K
Sbjct: 72 KKEK 75

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear. Length = 75

>gnl|CDD|239147 cd02684, MIT_2, MIT: domain contained within Microtubule Interacting and Trafficking molecules

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 16/67 (23%), Positives = 36/67 (53%)

Query: 5  LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKG 64
          L+++AV+ D+RG    +L+ Y   +   +  +   ++   ++ +R K+  Y++RAE LK 
Sbjct: 9  LVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEELKA 68

Query: 65 KLDEKKK 71
           +    +
Sbjct: 69 LIASDTQ 75

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG4509|consensus	247		100.0
cd02685	148	MIT_C MIT_C; domain found C-terminal to MIT (conta	100.0
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	99.86
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	99.82
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	99.81
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	99.78
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	99.76
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	99.75
PF04212	69	MIT: MIT (microtubule interacting and transport) d	99.73
cd02656	75	MIT MIT: domain contained within Microtubule Inter	99.71
KOG0739|consensus	439		99.69
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	99.67
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	99.63
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	96.98
PF08969	115	USP8_dimer: USP8 dimerisation domain; InterPro: IP	96.17
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.39
PF12063	238	DUF3543: Domain of unknown function (DUF3543); Int	88.32
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	87.86
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.5
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.43
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	84.36
KOG2709|consensus	560		81.78
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	81.15

>KOG4509|consensus

Probab=100.00  E-value=5.6e-81  Score=534.72  Aligned_cols=230  Identities=38%  Similarity=0.722  Sum_probs=223.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLS-NKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIE   80 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~-d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g~~~~~~~   80 (240)
                      |..++.+||+.|++|+|..||.||++||+++.+++++.+ |...|..++.+++.||+||+.|+++|+.+++.|++|+|++
T Consensus        15 Aa~iL~~AVe~d~e~k~pqALl~YkeGIdLi~e~lk~~~ldna~R~~i~~k~s~Ym~ka~diekYLdqekEdgk~~eQ~K   94 (247)
T KOG4509|consen   15 AAPILCDAVEDDKEGKVPQALLCYKEGIDLIAEALKGMKLDNADRCKIMAKFSDYMDKAADIEKYLDQEKEDGKTHEQIK   94 (247)
T ss_pred             hhhHHHHHhcccccccccHHHHHHhhhHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhh
Confidence            678899999999999999999999999999999999997 9999999999999999999999999999999999999999


Q ss_pred             hcCCCCccchHHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEee-cCCCCCCCccccchHHH
Q psy11809         81 IANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLT-TYADRPQHSNKTARVKQ  159 (240)
Q Consensus        81 i~en~~G~sY~~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T-~~d~~~~~~~~~~~~~q  159 (240)
                      |++|+||+||++|||.|+++++++|||+|||||..||+.||+|||||+|+.++.++.|||+| +.|++.-      ..+|
T Consensus        95 I~~NaTG~SY~~iF~e~~dd~l~~V~ieD~YIr~~HQL~NFlRFCElli~~pckvktihLLtisL~eG~E------~~kn  168 (247)
T KOG4509|consen   95 IAANATGFSYARIFGECCDDRLREVHIEDAYIRAHHQLVNFLRFCELLIKLPCKVKTIHLLTISLDEGEE------ARKN  168 (247)
T ss_pred             hhhccCcccHHHHHHHHHhhhhheeeecchHHHHHHHHHHHHHHHHHHcccccccceEEEEEEechhhHH------HHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999 8888763      5567


Q ss_pred             HHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCcccccccC-CCcccccCCCCCccccceEEEEEeccc
Q psy11809        160 EENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHV-PEFSIGFTDLSLRPCKETVVNIFHRAS  237 (240)
Q Consensus       160 ~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~I~igRGLd~fq~~-~~f~~g~~~~~~R~c~et~v~~~~~~~  237 (240)
                      ...|++|.+||+++||-|+|+||+|||||+|+|||||+||||||||||++| ++||+|+||+++|||+||+|||||.++
T Consensus       169 q~~~eEieeSL~~~GVl~eVefSssIHDREI~FdNGWmiK~GRGLDYFK~p~~kfsLG~~DfD~RPCHET~idIfhkKh  247 (247)
T KOG4509|consen  169 QAEFEEIEESLAKHGVLFEVEFSSSIHDREIIFDNGWMIKIGRGLDYFKAPDGKFSLGACDFDLRPCHETIIDIFHKKH  247 (247)
T ss_pred             hhhHHHHHHHHHhcceEEEEEecccccceeEEecCceEEEecCccccccCCCCceeecccccccCchhHHHHHHhhcCC
Confidence            888999999999999999999999999999999999999999999999999 999999999999999999999999875

>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins

Probab=100.00  E-value=5.3e-72  Score=465.51  Aligned_cols=147  Identities=45%  Similarity=0.786  Sum_probs=144.0

Q ss_pred             CCCccchHHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHH
Q psy11809         84 NEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENL  163 (240)
Q Consensus        84 n~~G~sY~~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l  163 (240)
                      |+||+||++||||||++.|++|+|||||||++||++||||||||+|++|+++++|||+|++|+.+       +++|.++|
T Consensus         1 n~~G~sYd~LFg~Yl~d~~~~I~ieDPYir~~hQi~Nl~~F~El~vk~~~~~~~i~LvT~~d~~~-------~~~Q~~~l   73 (148)
T cd02685           1 NATGFSYDRLFGPYLDDGVTEITVEDPYIRNFHQIRNFLRFCELVVKPPCELKYIHLVTGEDEDN-------GKQQIEAL   73 (148)
T ss_pred             CCCcccHHHHHHHHHhCCceEEEEeCccccchHHHHHHHHHHHHHhcCccceEEEEEEecCCCCC-------HHHHHHHH
Confidence            79999999999999997799999999999999999999999999999999999999999999988       89999999


Q ss_pred             HHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCcccccccC-CCcccccCCCCCccccceEEEEEeccc
Q psy11809        164 KQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHV-PEFSIGFTDLSLRPCKETVVNIFHRAS  237 (240)
Q Consensus       164 ~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~I~igRGLd~fq~~-~~f~~g~~~~~~R~c~et~v~~~~~~~  237 (240)
                      ++|++||+++||+|+|+||+|||||+|+|||||+|||||||||||+| ++||||+|||+||+|+||+|||||+++
T Consensus        74 ~~i~~sl~~~gI~~~~~f~~tiHDR~I~~~nGw~IkigRGLD~fq~~~~~fsig~~d~~~R~C~~t~Vdi~~~~~  148 (148)
T cd02685          74 EEIKQSLASHGVEFTWEFSDTIHDREIRTDNGWIIKIGRGLDYFKPPEGKFSLGNRDQDFRPCKATEVDIFHTKH  148 (148)
T ss_pred             HHHHHHHHhCCcEEEEEECCCccceEEEecCCeEEEECCcccceeCCCCccchhhcchhccceeeeEEEEEEcCC
Confidence            99999999999999999999999999999999999999999999999 899999999999999999999999874

The function of this domain is unknown.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.86  E-value=1.9e-21  Score=146.22  Aligned_cols=73  Identities=40%  Similarity=0.735  Sum_probs=69.9

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMG   73 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g   73 (240)
                      .|++++++||++|++|+|+||+.||++||++|+++++++||+.+|+.++.|+.+||+|||+||++|++.++.|
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~~~~~~   77 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQEKEDG   77 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCc
Confidence            3899999999999999999999999999999999999999999999999999999999999999998877654

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.82  E-value=6.2e-20  Score=137.35  Aligned_cols=69  Identities=25%  Similarity=0.407  Sum_probs=66.7

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEK   69 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~   69 (240)
                      +|++++++||+.|++|+|++|+.+|++||++|+.++++|+||.+|+.+++|+.+||+|||+||.+|.+.
T Consensus         5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~LK~~l~~~   73 (75)
T cd02684           5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEELKALIASD   73 (75)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            489999999999999999999999999999999999999999999999999999999999999999763

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.81  E-value=1e-19  Score=136.79  Aligned_cols=68  Identities=24%  Similarity=0.362  Sum_probs=65.1

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL-SNKGDQQKIRDKIETYINRAEVLKGKLDE   68 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e-~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~   68 (240)
                      +|++++++||++|++|+|+||+.+|++||++|+.+++++ +||..++.++.|+++||+|||+||+++.+
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk~~l~~   73 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQLVQG   73 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            489999999999999999999999999999999998888 99999999999999999999999999854

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.78  E-value=5.9e-19  Score=132.25  Aligned_cols=65  Identities=34%  Similarity=0.512  Sum_probs=63.1

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGK   65 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~   65 (240)
                      +|++++++||+.|++|+|++|+.+|++||++|+.++++++||.+|+.++.|+.+||+|||+|+..
T Consensus         5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE~i~~~   69 (75)
T cd02677           5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAEEILRL   69 (75)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999864

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.76  E-value=2.5e-18  Score=129.08  Aligned_cols=65  Identities=23%  Similarity=0.332  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKL   66 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l   66 (240)
                      |.+++++||++|+.|+|+||+.||++||+.|+++++.+||+.++..+++|+.+||+|||.||+.+
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v   70 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN   70 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            78999999999999999999999999999999999999999999999999999999999999987

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.75  E-value=4.6e-18  Score=126.55  Aligned_cols=69  Identities=32%  Similarity=0.469  Sum_probs=66.4

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEK   69 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~   69 (240)
                      +|+.++++||++|+.|+|++|+.+|.+|+++|+.+++.++||..+..++.|+.+|++|||.||.+|++.
T Consensus         5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~LK~~l~~~   73 (75)
T cd02678           5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEKLKEYLAKK   73 (75)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            489999999999999999999999999999999999999999999999999999999999999999653

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=99.73  E-value=1.7e-17  Score=120.93  Aligned_cols=66  Identities=36%  Similarity=0.575  Sum_probs=64.0

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKL   66 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l   66 (240)
                      .|++++++||++|++|+|++|+.+|++|+++|+++++.++||..++.+++|+.+||+|||.||+.|
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~lk~~L   69 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEKLKEYL   69 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            388999999999999999999999999999999999999999999999999999999999999876

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.71  E-value=4.9e-17  Score=120.26  Aligned_cols=69  Identities=30%  Similarity=0.520  Sum_probs=66.0

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEK   69 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~   69 (240)
                      +|++++++||+.|+.|+|++|+.+|.+|++.|+.+++.++||..|..++.++.+||+|||.||..+...
T Consensus         5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~Lk~~l~~~   73 (75)
T cd02656           5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFLKELLKKQ   73 (75)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            488999999999999999999999999999999999999999999999999999999999999998653

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>KOG0739|consensus

Probab=99.69  E-value=9.5e-17  Score=148.57  Aligned_cols=113  Identities=26%  Similarity=0.334  Sum_probs=90.2

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-C----
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL-SNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMG-N----   74 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e-~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g-~----   74 (240)
                      +||+++++|++.|++++|+||+.+|+.|++|||.++||| .+++.|+.+|.|+.||++|||+||.+|+..+..+ +    
T Consensus         9 kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL~~~~~~~~k~~~~   88 (439)
T KOG0739|consen    9 KAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYLKEKEKGAGKKGDE   88 (439)
T ss_pred             HHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcc
Confidence            489999999999999999999999999999999999999 6777999999999999999999999998754321 1    


Q ss_pred             -----cchhhhhcC--CCCccchHHhHHHhhcccccEEEeeCCcccchh
Q psy11809         75 -----YHEQIEIAN--NEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKH  116 (240)
Q Consensus        75 -----~~~~~~i~e--n~~G~sY~~lFg~yl~~~~~~I~ieDPYIr~~h  116 (240)
                           ....-...+  +.-|---.+-+..-|.+   .|.+|.|.|++.-
T Consensus        89 a~a~~~~~k~~ds~~eg~d~~pe~kKLr~~L~s---AIv~EKPNVkWsD  134 (439)
T KOG0739|consen   89 AVATVPKGKKKDSDGEGEDDEPEKKKLRSALNS---AIVREKPNVKWSD  134 (439)
T ss_pred             ccCCCCCCCCCCccccccCCChhHHHHHHHhhh---hhhccCCCCchhh
Confidence                 111122221  11222346788888876   7999999999753

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=99.67  E-value=3.9e-16  Score=115.56  Aligned_cols=68  Identities=29%  Similarity=0.493  Sum_probs=65.5

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDE   68 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~   68 (240)
                      +|++++.+||++|+.|+|++|+.+|++|++.|+.+++.++||..++.++.|+.+|++|||+||..+..
T Consensus         7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~~~~   74 (77)
T smart00745        7 KAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKSLLE   74 (77)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            48899999999999999999999999999999999999999999999999999999999999999854

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=99.63  E-value=1.1e-15  Score=114.80  Aligned_cols=64  Identities=30%  Similarity=0.500  Sum_probs=60.8

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH----HHHHHHHHHHHHhhh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIE----TYINRAEVLKGKLDE   68 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~----eYl~RAE~LK~~l~~   68 (240)
                      +|+.++++|++.|++|+|+||+.+|.+||++|+.    ++||..++.++.|+.    +||+|||+||.+|.+
T Consensus         5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~----ekn~~~k~~i~~K~~~~a~~yl~RAE~Lk~~l~~   72 (75)
T cd02680           5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN----TSNETMDQALQTKLKQLARQALDRAEALKESMSK   72 (75)
T ss_pred             HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH----hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4899999999999999999999999999999998    789999999999996    999999999999864

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=96.98  E-value=0.0045  Score=47.07  Aligned_cols=40  Identities=25%  Similarity=0.283  Sum_probs=36.6

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCC
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLS   40 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~   40 (240)
                      +|.+.+.+|+..|..|..++|+.+|+.|++.|..++.-..
T Consensus         7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~   46 (79)
T cd02679           7 QAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPV   46 (79)
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4788999999999999999999999999999999986653

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8)

Probab=96.17  E-value=0.024  Score=45.01  Aligned_cols=67  Identities=24%  Similarity=0.339  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCC----hhhHHH-H-HHHHHHH-HHHHHHHHHHhhhh
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSN----KGDQQK-I-RDKIETY-INRAEVLKGKLDEK   69 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d----~~~K~~-l-r~Ki~eY-l~RAE~LK~~l~~~   69 (240)
                      |..+.++|..+...|+.+.|+.+|...+.++ ..+..-+|    +..... + ..+..+- +++||.||..|+..
T Consensus        38 a~~l~~~A~~~~~egd~E~AYvl~~R~~~L~-~ki~~Hpdy~~~~~~~~~~~~~~~~~~~il~~lE~Lk~~L~~r  111 (115)
T PF08969_consen   38 ANKLLREAEEYRQEGDEEQAYVLYMRYLTLV-EKIPKHPDYKKDKNSYKKLLGKKKLNEVILEELEKLKPSLKER  111 (115)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCHCCSCCCCCTHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhhcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999988 77755443    333333 2 3344455 89999999999753

It has no known function. ; PDB: 2XZE_B 2A9U_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.39  E-value=0.37  Score=29.21  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=25.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTE   31 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~   31 (240)
                      |......|......|+|++|+.+|++||++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            345678899999999999999999999973

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised

Probab=88.32  E-value=1.5  Score=39.50  Aligned_cols=49  Identities=22%  Similarity=0.333  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhcC-------------C--CChhhH---HHHHHHHHHHHHHHHHHHHHh
Q psy11809         18 WTESLTFYQDGVTELLKHVRG-------------L--SNKGDQ---QKIRDKIETYINRAEVLKGKL   66 (240)
Q Consensus        18 y~EAl~lY~eaI~~Ll~~lK~-------------e--~d~~~K---~~lr~Ki~eYl~RAE~LK~~l   66 (240)
                      ..||+.+|..|+.+|-.++..             .  ++...+   +-+|.+.++.++|||.++..+
T Consensus        69 ~~E~LVLYvKaL~lLa~am~~a~~~w~~~~~~~~~~~~S~~vn~vVqwlr~rfneclekae~lr~~l  135 (238)
T PF12063_consen   69 SAEALVLYVKALSLLAKAMDIASAWWYSKNRGSGSLNPSSRVNQVVQWLRERFNECLEKAEFLRLRL  135 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999998887642             1  222222   458999999999999999999

This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=87.86  E-value=1.3  Score=27.77  Aligned_cols=26  Identities=12%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809          5 LLIRAVELDERGRWTESLTFYQDGVT   30 (240)
Q Consensus         5 ll~~AVe~D~~g~y~EAl~lY~eaI~   30 (240)
                      +..-|.-+.+.|+|++|+.+|++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34557778899999999999999874

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.50  E-value=2  Score=25.66  Aligned_cols=28  Identities=11%  Similarity=0.260  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809          4 FLLIRAVELDERGRWTESLTFYQDGVTE   31 (240)
Q Consensus         4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~   31 (240)
                      .....|.-....|++++|+.+|++|+++
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4566788889999999999999999974

...

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.43  E-value=3  Score=25.54  Aligned_cols=35  Identities=20%  Similarity=0.241  Sum_probs=25.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHV   36 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~l   36 (240)
                      |..+-.-|.-+-..|+|++|+.+|+++++..-..+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~   36 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLL   36 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHh
Confidence            34556677888889999999999999998766554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.36  E-value=3  Score=24.67  Aligned_cols=28  Identities=7%  Similarity=0.239  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809          4 FLLIRAVELDERGRWTESLTFYQDGVTE   31 (240)
Q Consensus         4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~   31 (240)
                      -+-..|.-+=..|+|++|+.+|++|+++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3456677788899999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2709|consensus

Probab=81.78  E-value=4.1  Score=40.31  Aligned_cols=68  Identities=21%  Similarity=0.335  Sum_probs=46.9

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc-CCC------Chh------hHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVR-GLS------NKG------DQQKIRDKIETYINRAEVLKGKLDE   68 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK-~e~------d~~------~K~~lr~Ki~eYl~RAE~LK~~l~~   68 (240)
                      |...+.+++-.|..+.+++|+..|..||.+++..+. +++      .+.      ..+.++.--.+---|.+-|++.+++
T Consensus        22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~Rl~vL~kqkqs  101 (560)
T KOG2709|consen   22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHRLNVLKKQKQS  101 (560)
T ss_pred             HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            456788899999999999999999999999998542 122      111      1123444444555677778776655


Q ss_pred             h
Q psy11809         69 K   69 (240)
Q Consensus        69 ~   69 (240)
                      .
T Consensus       102 i  102 (560)
T KOG2709|consen  102 I  102 (560)
T ss_pred             c
Confidence            3

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=81.15  E-value=2.9  Score=28.73  Aligned_cols=30  Identities=10%  Similarity=0.245  Sum_probs=26.7

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTE   31 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~   31 (240)
                      |..+...|..+-..|+|++|+.+|.+||++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~   32 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL   32 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            566778899999999999999999999974

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
2ymb_A	257	Structures Of Mitd1 Length = 257		4e-53
4a5z_A	163	Structures Of Mitd1 Length = 163		3e-35
4a5x_A	86	Structures Of Mitd1 Length = 86		9e-08
1wfd_A	93	Solution Structure Of Mouse Mit Domain Length = 93		4e-07
2jqh_A	89	Vps4b Mit Length = 89		8e-04

>pdb|2YMB|A Chain A, Structures Of Mitd1 Length = 257

Iteration: 1
 Score =  204 bits (519), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 104/236 (44%), Positives = 155/236 (65%), Gaps = 9/236 (3%)
Query: 2   AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
           A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G  +   +  +R+KI  Y++RAE 
Sbjct: 23  AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 82
Query: 62  LKGKLDEKKKMGNYHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNF 121
           +K  LD++K+ G YH+QI+I  N  G +YE LF  +L+E V ++ + DPYI + HQ YNF
Sbjct: 83  IKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNF 142
Query: 122 LQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINY 181
           L+FCE+ IK    VK I+LLT+  +         +V+Q   L++++ESLR   + L + Y
Sbjct: 143 LRFCEMLIKRPCKVKTIHLLTSLDE------GIEQVQQSRGLQEIEESLRSHGVLLEVQY 196
Query: 182 SNTLHDREIVLSNDWVIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFHR 235
           S+++HDREI  +N W+IKIGRGLD F   P+  FS+G+ D  LRPC ET V+IFH+
Sbjct: 197 SSSIHDREIRFNNGWMIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFHK 251

>pdb|4A5Z|A Chain A, Structures Of Mitd1 Length = 163

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 103/160 (64%), Gaps = 9/160 (5%)
Query: 77  EQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVK 136
           +QI+I  N  G +YE LF  +L+E V ++ + DPYI + HQ YNFL+FCE  IK    VK
Sbjct: 10  DQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNFLRFCEXLIKRPCKVK 69
Query: 137 RINLLTTYADRPQHSNKTARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDW 196
            I+LLT+  +         +V+Q   L++++ESLR   + L + YS+++HDREI  +N W
Sbjct: 70  TIHLLTSLDE------GIEQVQQSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGW 123
Query: 197 VIKIGRGLDIFCHVPE--FSIGFTDLSLRPCKETVVNIFH 234
            IKIGRGLD F   P+  FS+G+ D  LRPC ET V+IFH
Sbjct: 124 XIKIGRGLDYF-KKPQSRFSLGYCDFDLRPCHETTVDIFH 162

>pdb|4A5X|A Chain A, Structures Of Mitd1 Length = 86

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 2  AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
          A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G  +   +  +R+KI  Y++RAE 
Sbjct: 16 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 75
Query: 62 LKGKLDEKK 70
          +K  LD++K
Sbjct: 76 IKKYLDQEK 84

>pdb|1WFD|A Chain A, Solution Structure Of Mouse Mit Domain Length = 93

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 2  AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
          A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G      +  +R KI  Y++RAE 
Sbjct: 15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN 74
Query: 62 LKGKLDEKKKMG 73
          +K  LD++K+ G
Sbjct: 75 IKKYLDQEKEDG 86

>pdb|2JQH|A Chain A, Vps4b Mit Length = 89

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 5  LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQ--QKIRDKIETYINRAEVL 62
          L  +A + D+ G + E+L  YQ  V   L HV     +GD+  Q IR K   Y++RAE L
Sbjct: 17 LASKAAQEDKAGNYEEALQLYQHAVQYFL-HVVKYEAQGDKAKQSIRAKCTEYLDRAEKL 75
Query: 63 KGKLDEKKK 71
          K  L  K+K
Sbjct: 76 KEYLKNKEK 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	2e-15
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	2e-14
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	2e-12
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	9e-10
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	3e-09
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	1e-05

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1 Length = 93

 Score = 68.4 bits (167), Expect = 2e-15
 Identities = 28/73 (38%), Positives = 45/73 (61%)

Query: 2  AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
          A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G      +  +R KI  Y++RAE 
Sbjct: 15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN 74

Query: 62 LKGKLDEKKKMGN 74
          +K  LD++K+ G 
Sbjct: 75 IKKYLDQEKEDGK 87

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} Length = 85

 Score = 65.7 bits (160), Expect = 2e-14
 Identities = 21/72 (29%), Positives = 38/72 (52%)

Query: 2  AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
             L+ +A++LD   ++ E+ T Y +G+  L+  ++   N   +  IR K   Y+NRAE 
Sbjct: 13 GIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQ 72

Query: 62 LKGKLDEKKKMG 73
          LK  L+ ++   
Sbjct: 73 LKKHLESEEANA 84

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1 Length = 117

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 2  AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVR-GLSNKGDQQKIRDKIETYINRAE 60
          A  L  +A + D+ G + E+L  YQ  V   L  V+        +Q IR K   Y++RAE
Sbjct: 18 AIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAE 77

Query: 61 VLKGKLDEKKKMGN 74
           LK  L  K+K   
Sbjct: 78 KLKEYLKNKEKKAQ 91

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B* Length = 83

 Score = 53.1 bits (127), Expect = 9e-10
 Identities = 14/73 (19%), Positives = 29/73 (39%)

Query: 1  LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAE 60
          +A+   I AV+ D+ G+  +++T+Y+  +  L + +        +      I  Y  R  
Sbjct: 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRIS 69

Query: 61 VLKGKLDEKKKMG 73
           L+  L       
Sbjct: 70 YLEKVLPASSDGS 82

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius} Length = 83

 Score = 51.6 bits (123), Expect = 3e-09
 Identities = 18/63 (28%), Positives = 28/63 (44%)

Query: 1  LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAE 60
          +A+   I AV+ D+ G   E++T Y+  +  L + V    +          I  Y  R E
Sbjct: 18 MARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIE 77

Query: 61 VLK 63
          VLK
Sbjct: 78 VLK 80

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 5  LLIRAVELDERGRWTESLTFYQDGVTELLKHV-RGLSNKGDQQKIRDKIETYINRAEVLK 63
          L  +A + D+ G + E+L  YQ  V   L  V         +Q IR K   Y++RAE LK
Sbjct: 14 LASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLK 73

Query: 64 GKLDEKKK 71
            L +K+K
Sbjct: 74 EYLKKKEK 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
2ymb_A	257	MITD1, MIT domain-containing protein 1; protein tr	100.0
4a5z_A	163	MITD1, MIT domain-containing protein 1; protein tr	100.0
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	99.84
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	99.82
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	99.81
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	99.8
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	99.76
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	99.72
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.39
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	97.32
3eab_A	89	Spastin; spastin, MIT, ESCRT, alternative splicing	96.83
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	96.05
2xze_A	146	STAM-binding protein; hydrolase-protein transport	95.56
2a9u_A	144	Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL	94.76
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	94.69
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	89.41
1byr_A	155	Protein (endonuclease); phosphodiesterase,; 2.00A	87.43
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	85.89
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	83.48
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	83.48
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	81.5

>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}

Probab=100.00  E-value=1.1e-96  Score=660.39  Aligned_cols=234  Identities=44%  Similarity=0.804  Sum_probs=148.8

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIE   80 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g~~~~~~~   80 (240)
                      .|++++++||++|++|+|+||+.+|++||++|++++++++|+.+|+.++.|+++||+|||+||++|++++++|++++|++
T Consensus        22 ~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~d~~~k~~lr~Ki~eYl~RAE~LK~~L~k~k~~g~~~~~i~  101 (257)
T 2ymb_A           22 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQEKEDGKYHKQIK  101 (257)
T ss_dssp             ---------------------------------------------------------------------------CCEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCceEEEEE
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCccchHHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHH
Q psy11809         81 IANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQE  160 (240)
Q Consensus        81 i~en~~G~sY~~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~  160 (240)
                      |++|+||+||++||||||+++|++|+|+|||||.+||++||||||||+|++|++++.|||+|++|++..      ..+|.
T Consensus       102 I~~n~~G~sY~~lFg~yl~~~~~~i~i~DPYir~~hQ~~Nl~~f~E~~vk~~~~~~~i~L~T~~d~~~~------~~~q~  175 (257)
T 2ymb_A          102 IEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIE------QVQQS  175 (257)
T ss_dssp             ECTTCCSCCHHHHSSTTCSTTCCEEEEECSCCCSHHHHHHHHHHHHHHTC--CCCCEEEEEECCCSSTT------HHHHH
T ss_pred             ECCCCccccHHHHHHHHHhcCCeEEEEeCceecchHHHHHHHHHHHHHhhccCccceEEEEecCCCccc------HHHHH
Confidence            999999999999999999877999999999999999999999999999999999999999999998764      77899


Q ss_pred             HHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCcccccccC-CCcccccCCCCCccccceEEEEEeccccC
Q psy11809        161 ENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHV-PEFSIGFTDLSLRPCKETVVNIFHRASLI  239 (240)
Q Consensus       161 ~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~I~igRGLd~fq~~-~~f~~g~~~~~~R~c~et~v~~~~~~~~~  239 (240)
                      ++|++|++||+++||+|+|+||+|||||+|+|||||+|+|||||||||+| ++||||+||++||+|+||+|||||+++++
T Consensus       176 ~~l~~ik~sl~~~gi~~~~~~~~tiHDR~I~~dnGW~IkigRGLD~fq~~~~~f~lg~~d~~lR~C~et~Vdi~~~~~~~  255 (257)
T 2ymb_A          176 RGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPCHETTVDIFHKKHTK  255 (257)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEECTTCCCCEEEETTSEEEEESSTTCCBCCCSSTTCTTSSCTTSSCBCCEEEEEEEC----
T ss_pred             HHHHHHHHHHHhCCCEEEEEECCCccceeEEecCCcEEEecCccccccCCCCcccccccccccCcceeeEEEEEeccccC
Confidence            99999999999999999999999999999999999999999999999999 99999999999999999999999999987


Q ss_pred             C
Q psy11809        240 K  240 (240)
Q Consensus       240 ~  240 (240)
                      +
T Consensus       256 ~  256 (257)
T 2ymb_A          256 N  256 (257)
T ss_dssp             -
T ss_pred             C
Confidence            5

>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}

Probab=100.00  E-value=9e-75  Score=487.53  Aligned_cols=155  Identities=47%  Similarity=0.873  Sum_probs=147.9

Q ss_pred             cchhhhhcCCCCccchHHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCcccc
Q psy11809         75 YHEQIEIANNEKGVTYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKT  154 (240)
Q Consensus        75 ~~~~~~i~en~~G~sY~~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~  154 (240)
                      ...+++|++|+||+||++||||||+++|++|+|||||||++||++||||||||+|++|++++.|||+|++|+.++     
T Consensus         8 ~~~~~~i~en~tG~SYe~LFg~YL~~~~~~I~IeDPYIR~~hQi~NfvrF~Ellvk~~~~~~~I~L~T~~d~~~~-----   82 (163)
T 4a5z_A            8 HMDQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIE-----   82 (163)
T ss_dssp             EEEEEEECTTCCCCCHHHHHGGGCCTTCCEEEEECSCCCSHHHHHHHHHHHHHHHC--CCCCEEEEEECCCCSTT-----
T ss_pred             chhheeeecCCccccHHHHHHHHHhCCceEEEEECCccccHHHHHHHHHHHHHHHhcCCCccEEEEEeCCccccC-----
Confidence            356899999999999999999999988999999999999999999999999999999999999999999998744     


Q ss_pred             chHHHHHHHHHHHHHHhccCcEEEEEecCCccceEEEecCCeEEEeCCcccccccC-CCcccccCCCCCccccceEEEEE
Q psy11809        155 ARVKQEENLKQLQESLRKMKITLNINYSNTLHDREIVLSNDWVIKIGRGLDIFCHV-PEFSIGFTDLSLRPCKETVVNIF  233 (240)
Q Consensus       155 ~~~~q~~~l~~i~~sl~~~gi~l~~~~~~tiHDR~I~~dnGw~I~igRGLd~fq~~-~~f~~g~~~~~~R~c~et~v~~~  233 (240)
                       +++|.++|++|++||+++||+|+|+||+|||||+|+|||||+|||||||||||+| ++||||++|++||+|+||+||||
T Consensus        83 -~~~Q~~~L~~ik~sL~~~gI~l~~~fs~tiHDR~I~~dnGW~IkiGRGLD~fq~~~~~fslg~~d~~lR~C~et~Vdi~  161 (163)
T 4a5z_A           83 -QVQQSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPCHETTVDIF  161 (163)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCEEEEEECTTCCCCEEEETTSEEEEETTTTCCBCCCSSTTCTTSSCGGGSCBCCEEEEEE
T ss_pred             -HHHHHHHHHHHHHHHHHCCCEEEEEeCCCccceEEEecCCeEEEECCCccccccCCCcccccccccccCceeeEEEEEE
Confidence             8999999999999999999999999999999999999999999999999999998 99999999999999999999999


Q ss_pred             ec
Q psy11809        234 HR  235 (240)
Q Consensus       234 ~~  235 (240)
                      |.
T Consensus       162 ~~  163 (163)
T 4a5z_A          162 HD  163 (163)
T ss_dssp             EC
T ss_pred             eC
Confidence            84

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=99.84  E-value=1.1e-20  Score=145.37  Aligned_cols=78  Identities=36%  Similarity=0.563  Sum_probs=75.3

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQ   78 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g~~~~~   78 (240)
                      +|++++++||++|++|+|+||+.+|++||++|+.++++++|+.+|+.|+.|+.+||+|||+||.+|++.++.|++|.+
T Consensus        14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~~~~g~~~~~   91 (93)
T 1wfd_A           14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQEKEDGKSGPS   91 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSS
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCC
Confidence            389999999999999999999999999999999999999999999999999999999999999999999999999865

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=99.82  E-value=3.1e-20  Score=141.25  Aligned_cols=71  Identities=38%  Similarity=0.651  Sum_probs=67.1

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKK   71 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke   71 (240)
                      +|++++++||++|++|+|+||+.+|++||++|+.++++++||.+|+.|++|+.+||+|||+||.+|++.++
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~LK~~l~~~k~   85 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQEKE   85 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            38999999999999999999999999999999999999999999999999999999999999999987654

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=99.81  E-value=2.9e-20  Score=140.60  Aligned_cols=66  Identities=27%  Similarity=0.345  Sum_probs=63.9

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKL   66 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l   66 (240)
                      +|++++++||++|++|+|+||+.+|++||++|++++++++|+..|+.+++|+.+|++|||+||.+|
T Consensus        18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK~~l   83 (83)
T 2w2u_A           18 MARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKELI   83 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            389999999999999999999999999999999999999999999999999999999999999864

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=99.80  E-value=3.4e-20  Score=139.89  Aligned_cols=66  Identities=21%  Similarity=0.330  Sum_probs=64.6

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKL   66 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l   66 (240)
                      +|++++++||++|++|+|+||+.+|++||++|++++++++|+..|+.+++|+.+|++|||+||.++
T Consensus        10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~~l   75 (83)
T 2v6y_A           10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVL   75 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            489999999999999999999999999999999999999999999999999999999999999998

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.2e-18  Score=129.75  Aligned_cols=71  Identities=30%  Similarity=0.447  Sum_probs=67.7

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKK   71 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke   71 (240)
                      +|+.++++||+.|++|+|+||+.+|++|+++|+.++++++||..|+.|+.|+.+|++|||+||.+|++.+.
T Consensus        12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~l~~~~~   82 (85)
T 2v6x_A           12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLESEEA   82 (85)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            38899999999999999999999999999999999999999999999999999999999999999987644

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=99.72  E-value=2e-17  Score=132.25  Aligned_cols=70  Identities=34%  Similarity=0.440  Sum_probs=66.7

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL-SNKGDQQKIRDKIETYINRAEVLKGKLDEKK   70 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e-~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~k   70 (240)
                      +|++++++||++|++|+|+|||.+|++||++||.+++++ +++..|+.|+.|+.+||+|||+||.+|+...
T Consensus        17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l~~~~   87 (117)
T 2cpt_A           17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKE   87 (117)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            389999999999999999999999999999999999999 7998899999999999999999999998665

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.39  E-value=2.7e-14  Score=134.32  Aligned_cols=70  Identities=34%  Similarity=0.441  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGL-SNKGDQQKIRDKIETYINRAEVLKGKLDEKK   70 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e-~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~k   70 (240)
                      +|++++++||++|++|+|+||+.+|++||++|+.++++| ++++.|+.|++|+.+||+|||+||.++++.+
T Consensus        10 ~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~~   80 (444)
T 2zan_A           10 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKE   80 (444)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            589999999999999999999999999999999999999 8998899999999999999999999997654

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.32  E-value=0.0015  Score=51.97  Aligned_cols=68  Identities=18%  Similarity=0.338  Sum_probs=52.3

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCC------h--hhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSN------K--GDQQKIRDKIETYINRAEVLKGKLDE   68 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d------~--~~K~~lr~Ki~eYl~RAE~LK~~l~~   68 (240)
                      +|..++.+|++.|..|+-.+|+.+|++||+.|..++.-..+      +  .+-..++.||.+-+.-|..=-..|.+
T Consensus        21 ~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~   96 (116)
T 2dl1_A           21 KAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEK   96 (116)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47889999999999999999999999999999999976543      1  22345777777776655554444443

>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=96.83  E-value=0.0034  Score=47.81  Aligned_cols=60  Identities=22%  Similarity=0.343  Sum_probs=48.4

Q ss_pred             ChHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHHHHHHHHH
Q psy11809          1 LAQFLLIRAVELDER---GRWTESLTFYQDGVTELLKHVRGLSNK-----GDQQKIRDKIETYINRAE   60 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~---g~y~EAl~lY~eaI~~Ll~~lK~e~d~-----~~K~~lr~Ki~eYl~RAE   60 (240)
                      +|.+++.+|...|..   |+-++|+.+|++||+-|..++.-..+.     .+-..++.||.+-+.-|.
T Consensus        15 ~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~   82 (89)
T 3eab_A           15 QAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAK   82 (89)
T ss_dssp             HHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999   999999999999999999999765432     334557788877666443

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=96.05  E-value=0.059  Score=41.39  Aligned_cols=63  Identities=11%  Similarity=0.161  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy11809          5 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLD   67 (240)
Q Consensus         5 ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~   67 (240)
                      .-.+|-.+=+.|+|+||+.|++.|..+|..++|...++...++|.-.-.-+|.-.+-|++..+
T Consensus        18 ~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~SLqLQrd~HlKQ~~liq~r~k   80 (97)
T 2crb_A           18 QSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLELQRDSHMKQLLLIQERWK   80 (97)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788888999999999999999999999999999999888877766666776666666554

>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}

Probab=95.56  E-value=0.053  Score=44.17  Aligned_cols=66  Identities=17%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCC------hhhHHHHHHHHHHH-HHHHHHHHHHhhh
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSN------KGDQQKIRDKIETY-INRAEVLKGKLDE   68 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d------~~~K~~lr~Ki~eY-l~RAE~LK~~l~~   68 (240)
                      |.+++++|-.+-..|+++.|+.+|...+.+++..+..-||      +..+. +..++..= +.++|.||..|..
T Consensus        40 a~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~-~l~~l~~~~~~~lE~LK~~L~~  112 (146)
T 2xze_A           40 GVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKD-TVKKLKEIAFPKAEELKAELLK  112 (146)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHH-HHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHH-HHHHHHHHhHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999977754332      33344 44455555 8999999998876

>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1

Probab=94.76  E-value=0.12  Score=42.23  Aligned_cols=67  Identities=16%  Similarity=0.055  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCC-----hhhHHH-HHHHHHHHHHHHHHHHHHhhhh
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSN-----KGDQQK-IRDKIETYINRAEVLKGKLDEK   69 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d-----~~~K~~-lr~Ki~eYl~RAE~LK~~l~~~   69 (240)
                      |..+++.|-.+...|+.+.|+.+|..-+.++. .+..-+|     +..++. .+..+..-+++||.||..|...
T Consensus        42 a~~L~r~A~~y~~EGd~E~AYilymRy~~L~~-kIpkHpdyk~~~~~~k~~l~k~~~~~vl~~lE~LK~~L~~r  114 (144)
T 2a9u_A           42 ALKIFKTAEECRLDRDEERAYVLYMKYVTVYN-LIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLR  114 (144)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTTSHHHHHTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHhcCcchhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999998874 4432222     222333 3566778899999999999764

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=94.69  E-value=0.22  Score=36.75  Aligned_cols=61  Identities=16%  Similarity=0.157  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy11809          4 FLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKG   64 (240)
Q Consensus         4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~   64 (240)
                      +-++.|-++=-.|+|+.|+.+|..+++.+-..+..-.||..|..-.+--.+-.+-.|.+|.
T Consensus        14 e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~Vk~   74 (78)
T 2rpa_A           14 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKD   74 (78)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHHHHHH
Confidence            5578888999999999999999999999999998888999987755544444444444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=89.41  E-value=1.1  Score=36.76  Aligned_cols=80  Identities=18%  Similarity=0.145  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhcC
Q psy11809          4 FLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGNYHEQIEIAN   83 (240)
Q Consensus         4 ~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g~~~~~~~i~e   83 (240)
                      -...+|.-+-+-|+|+||+.+|..||++|...+...||..     ..-++.|.+|+..+...=.-.+....+.+-+++..
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~-----~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p  133 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG-----KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  133 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchH-----HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            3456666677779999999999999999998885555432     22233445666555543222222233444444544


Q ss_pred             CCCcc
Q psy11809         84 NEKGV   88 (240)
Q Consensus        84 n~~G~   88 (240)
                      ++.|.
T Consensus       134 ~d~~~  138 (159)
T 2hr2_A          134 ERKGE  138 (159)
T ss_dssp             HCCSC
T ss_pred             CcHHH
Confidence            44443

>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A

Probab=87.43  E-value=7.3  Score=29.75  Aligned_cols=99  Identities=11%  Similarity=0.046  Sum_probs=61.9

Q ss_pred             chHHhHHHhhcccccEEEeeCCcccchhHHhhHHHHHHHHHhcCCCcceEEEeecCCCCCCCccccchHHHHHHHHHHHH
Q psy11809         89 TYEKLFGRFLDENVEQIDVTDPYIHNKHQCYNFLQFCELAIKNCKNVKRINLLTTYADRPQHSNKTARVKQEENLKQLQE  168 (240)
Q Consensus        89 sY~~lFg~yl~~~~~~I~ieDPYIr~~hQ~~N~~~f~E~~v~~~~~~~~i~L~T~~d~~~~~~~~~~~~~q~~~l~~i~~  168 (240)
                      +....+-.-+++.-++|.|.-||+..    .   ++.+.|......=..|++++......       .......+..   
T Consensus        14 ~~~~~~~~~i~~A~~~I~i~~~~~~~----~---~i~~aL~~a~~rGV~Vril~~~~~~~-------~~~~~~~~~~---   76 (155)
T 1byr_A           14 SARVLVLSAIDSAKTSIRMMAYSFTA----P---DIMKALVAAKKRGVDVKIVIDERGNT-------GRASIAAMNY---   76 (155)
T ss_dssp             HHHHHHHHHHHHCSSEEEEEESSBCC----H---HHHHHHHHHHHTTCEEEEEEESTTCC-------SHHHHHHHHH---
T ss_pred             cHHHHHHHHHHHHhhEEEEEEEEeCC----H---HHHHHHHHHHHCCCEEEEEEeCcccc-------ccccHHHHHH---
Confidence            44556666676655789999999954    2   34444443322335799999765432       1122333444   


Q ss_pred             HHhccCcEEEEEe-cCCccceEEEecCCeEEEeCCccc
Q psy11809        169 SLRKMKITLNINY-SNTLHDREIVLSNDWVIKIGRGLD  205 (240)
Q Consensus       169 sl~~~gi~l~~~~-~~tiHDR~I~~dnGw~I~igRGLd  205 (240)
                       |...||.+.+.. ...+|..-+++|+.|.+.=+-.++
T Consensus        77 -L~~~gv~v~~~~~~~~~H~K~~iiD~~~~~iGS~N~~  113 (155)
T 1byr_A           77 -IANSGIPLRTDSNFPIQHDKVIIVDNVTVETGSFNFT  113 (155)
T ss_dssp             -HHHTTCCEEEECSSSCCCCCEEEETTTEEEEESCCBS
T ss_pred             -HHHCCCeEEEcCCcccccceEEEECCCEEEEECCCCC
Confidence             445788876532 246999999999888776666555

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=85.89  E-value=5.9  Score=29.62  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=29.7

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHV   36 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~l   36 (240)
                      |..+..+|..+=+.|+|++|+.+|.+||+++-...
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~   45 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLI   45 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            45677888999999999999999999999766554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=83.48  E-value=1.4  Score=40.00  Aligned_cols=104  Identities=12%  Similarity=0.014  Sum_probs=68.2

Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH--H------HHHHHHHHHHhhhhhhccCcchhhhhcCC
Q psy11809         13 DERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIET--Y------INRAEVLKGKLDEKKKMGNYHEQIEIANN   84 (240)
Q Consensus        13 D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~e--Y------l~RAE~LK~~l~~~ke~g~~~~~~~i~en   84 (240)
                      -..|+..+|+..|...-+.|..-+-.+|+|..++.++.-...  -      ..-+..+...+...........+..+.++
T Consensus       216 ~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~~l~~~  295 (388)
T 2ff4_A          216 YLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDI  295 (388)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHBCTTSSBCCCEEEET
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCCCCCCCccccchhhhHhhcccccCCCCCeEEEEEC
Confidence            468999999999999999999999889999998877652211  0      11255666666655444333444555566


Q ss_pred             CCccchHHhHHHhhccc--ccEEEeeCCcccchh
Q psy11809         85 EKGVTYEKLFGRFLDEN--VEQIDVTDPYIHNKH  116 (240)
Q Consensus        85 ~~G~sY~~lFg~yl~~~--~~~I~ieDPYIr~~h  116 (240)
                      ..|.+|.=-=+++.-|+  -..|.+.||+|...|
T Consensus       296 ~~g~~~~l~~~~~~iGR~~~~di~l~~~~vSr~H  329 (388)
T 2ff4_A          296 ASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHH  329 (388)
T ss_dssp             TTCCEEECCSSEEEEESSTTSSEECCCTTSCTTC
T ss_pred             CCCcEEEECCCCEEEecCCCCeEEECCCccChhH
Confidence            66766641112222221  147899999998777

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=83.48  E-value=0.99  Score=36.97  Aligned_cols=31  Identities=16%  Similarity=0.073  Sum_probs=27.7

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTEL   32 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~L   32 (240)
                      |-.+...+..+-+.|+|++|+.+|.+||++.
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~   41 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEIS   41 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            5677889999999999999999999999854

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=81.50  E-value=7.9  Score=36.49  Aligned_cols=48  Identities=10%  Similarity=-0.065  Sum_probs=37.8

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRD   50 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~   50 (240)
                      |..+.+-|.-+...|+|+||..+|++|++.+...+ +...|...+....
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l-G~~Hp~~~~~~~~  440 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH-GPSHPITKDLEAM  440 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHH
Confidence            55677788888999999999999999999887776 4456666665433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1wfda_	93	a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {	1e-14
d1wr0a1	77	a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS	6e-10

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.9 bits (158), Expect = 1e-14
 Identities = 28/73 (38%), Positives = 45/73 (61%)

Query: 2  AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEV 61
          A  +L RAVELD   R+ ++L  YQ+G+  LL+ ++G      +  +R KI  Y++RAE 
Sbjct: 15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN 74

Query: 62 LKGKLDEKKKMGN 74
          +K  LD++K+ G 
Sbjct: 75 IKKYLDQEKEDGK 87

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 6e-10
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 2  AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGD-QQKIRDKIETYINRAE 60
          A  L  +A + D+ G + E+L  YQ  V   L  V+  +     +Q IR K   Y++RAE
Sbjct: 11 AIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAE 70

Query: 61 VLKGKL 66
           LK  L
Sbjct: 71 KLKEYL 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	99.8
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	99.74
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	97.19
d2a9ua1	134	Ubiquitin carboxyl-terminal hydrolase 8, USH8 {Hum	95.48
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	90.27
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	83.63
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	83.16
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	82.5
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	81.64

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1e-19  Score=138.07  Aligned_cols=74  Identities=38%  Similarity=0.609  Sum_probs=70.1

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKLDEKKKMGN   74 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l~~~ke~g~   74 (240)
                      +|++++++||++|++|+|++|+.+|.+||++|+.+++.++|+.+|+.|+.|+.+||+|||+||.+|...+..|.
T Consensus        14 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE~LK~~l~~~~~~~~   87 (93)
T d1wfda_          14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQEKEDGK   87 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            48999999999999999999999999999999999999999999999999999999999999999988766543

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.8e-19  Score=129.08  Aligned_cols=66  Identities=35%  Similarity=0.441  Sum_probs=62.6

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy11809          1 LAQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLS-NKGDQQKIRDKIETYINRAEVLKGKL   66 (240)
Q Consensus         1 ~Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~-d~~~K~~lr~Ki~eYl~RAE~LK~~l   66 (240)
                      +|++++++||++|++|+|++|+.+|.+|+++|++++++++ ++..|+.++.|+.+||+|||+||++|
T Consensus        10 ~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~~k~~l~~k~~~Yl~RAE~LK~~l   76 (77)
T d1wr0a1          10 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYL   76 (77)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3899999999999999999999999999999999999985 67789999999999999999999887

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.0011  Score=47.93  Aligned_cols=61  Identities=11%  Similarity=0.172  Sum_probs=53.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q psy11809          6 LIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAEVLKGKL   66 (240)
Q Consensus         6 l~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE~LK~~l   66 (240)
                      -.+|=.+=++|+|+||+.|++.|..+|..++|..+++....+|.-...-++.-.+-|+..-
T Consensus        12 ~RrAer~l~~~rydeAIech~kA~~yl~eA~klt~s~~~l~SLqLQ~~~hlKQ~~~i~~r~   72 (83)
T d2crba1          12 SRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLELQRDSHMKQLLLIQERW   72 (83)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567778889999999999999999999999999999999999988888888777776543

>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase 8, USH8 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: USP8 N-terminal domain-like
family: USP8 N-terminal domain-like
domain: Ubiquitin carboxyl-terminal hydrolase 8, USH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.035  Score=42.82  Aligned_cols=67  Identities=16%  Similarity=0.091  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCCh-----hhHHHH-HHHHHHHHHHHHHHHHHhhhh
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNK-----GDQQKI-RDKIETYINRAEVLKGKLDEK   69 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~-----~~K~~l-r~Ki~eYl~RAE~LK~~l~~~   69 (240)
                      |.++++.|-.+...|+.+.|+.+|+.-+.+| ..+..-||-     ..+..+ ...+..-+++||.||..|...
T Consensus        35 a~~l~~~A~~y~~egd~E~AYily~Ry~~L~-eki~kHpdyk~~~~~~~~~l~~~~~~~~l~~~E~Lk~~L~~r  107 (134)
T d2a9ua1          35 ALKIFKTAEECRLDRDEERAYVLYMKYVTVY-NLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLR  107 (134)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTTSHHHHHTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHcCcccccchhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999987 556443222     222222 345777899999999999764

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=90.27  E-value=0.21  Score=37.07  Aligned_cols=32  Identities=13%  Similarity=0.168  Sum_probs=25.7

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy11809          2 AQFLLIRAVELDERGRWTESLTFYQDGVTELL   33 (240)
Q Consensus         2 Ai~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll   33 (240)
                      |.++-.++..+=+.|+|++|+.+|.+||+++.
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~   48 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFI   48 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            44555667777789999999999999998654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=83.63  E-value=1.6  Score=32.30  Aligned_cols=31  Identities=13%  Similarity=0.155  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy11809          3 QFLLIRAVELDERGRWTESLTFYQDGVTELL   33 (240)
Q Consensus         3 i~ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll   33 (240)
                      -.+-.++.++=+.|+|++|+.+|.+||.++-
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~   46 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLE   46 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3444567778889999999999999998753

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.16  E-value=2  Score=31.56  Aligned_cols=32  Identities=9%  Similarity=0.055  Sum_probs=25.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q psy11809          5 LLIRAVELDERGRWTESLTFYQDGVTELLKHV   36 (240)
Q Consensus         5 ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~l   36 (240)
                      +-..+...=+.|+|.+|+.+|.+||+++-...
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~   61 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR   61 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh
Confidence            34557777889999999999999998765544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.50  E-value=4.8  Score=28.86  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=16.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11809          6 LIRAVELDERGRWTESLTFYQDGVT   30 (240)
Q Consensus         6 l~~AVe~D~~g~y~EAl~lY~eaI~   30 (240)
                      ...|+-+...|+|.+|+.+|.+++.
T Consensus        82 ~~~g~~~~~~g~~~eA~~~~~~a~~  106 (159)
T d1a17a_          82 YRRAASNMALGKFRAALRDYETVVK  106 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445555667777777777777765

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.64  E-value=1.9  Score=32.03  Aligned_cols=55  Identities=20%  Similarity=0.210  Sum_probs=32.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH
Q psy11809          5 LLIRAVELDERGRWTESLTFYQDGVTELLKHVRGLSNKGDQQKIRDKIETYINRAE   60 (240)
Q Consensus         5 ll~~AVe~D~~g~y~EAl~lY~eaI~~Ll~~lK~e~d~~~K~~lr~Ki~eYl~RAE   60 (240)
                      +-.++..+=+.|+|++|+.+|.+||+++-.. ....+......-.-++.-|.++|.
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~nla~   70 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYE-SSFSNEEAQKAQALRLASHLNLAM   70 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-CCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc-cccchHHHhhhchhHHHHHHHHHH
Confidence            3355666667899999999999999865432 222333333333333344555443