Psyllid ID: psy11813

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRCPNN
Secondary Structure (PSIPRED)
cccEEEEEEEEcccEEEEEEcccccHHHHHHHHHHHcccccccEEEEEEEcccccccccccccEEccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEcccccEEEEEccccEHHHHHHHHHHHHccccHHHEEEEEEcccccEEEcccccEcccccc
Coil and Loop (DISEMBL)
MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLqyadsrgdlTWIKLYkkvrcpnn
Flexible Loop (DISEMBL)
MNGLMNVRVTTMDAELEFAIQHtttgkqlfDQTVKTIGLREVWFFGLqyadsrgdltwiklykkvrcpnn
Low Complexity Region (SEG)
MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRCPNN
Disordered region (IsUnstruct)
******VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVR****
Disordered Region (DISOPRED)
****MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLY*KV*****
Disordered Region (DISEMBL)
MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRCPNN
Disordered Region (DISPRO)
*NGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKV*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRCPNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
B0WYY2	572	Moesin/ezrin/radixin homo	N/A	N/A	0.871	0.106	0.918	1e-27
Q170J7	583	Moesin/ezrin/radixin homo	N/A	N/A	0.885	0.106	0.903	1e-27
Q29GR8	593	Moesin/ezrin/radixin homo	no	N/A	0.871	0.102	0.901	9e-27
P46150	578	Moesin/ezrin/radixin homo	no	N/A	0.871	0.105	0.901	1e-26
Q7PS12	581	Moesin/ezrin/radixin homo	yes	N/A	0.914	0.110	0.859	1e-26
Q32LP2	583	Radixin OS=Bos taurus GN=	yes	N/A	0.928	0.111	0.784	1e-23
Q9PU45	583	Radixin OS=Gallus gallus	yes	N/A	0.928	0.111	0.784	2e-23
P26044	583	Radixin OS=Sus scrofa GN=	yes	N/A	0.871	0.104	0.819	1e-22
P26043	583	Radixin OS=Mus musculus G	no	N/A	0.871	0.104	0.819	1e-22
P35241	583	Radixin OS=Homo sapiens G	yes	N/A	0.871	0.104	0.819	1e-22

>sp|B0WYY2|MOEH_CULQU Moesin/ezrin/radixin homolog 1 OS=Culex quinquefasciatus GN=Moe PE=3 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/61 (91%), Positives = 58/61 (95%)

Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
          MNVRVTTMDAELEFAIQ +TTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIKLYKK
Sbjct: 1  MNVRVTTMDAELEFAIQQSTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKK 60

Query: 65 V 65
          V
Sbjct: 61 V 61

Involved in connections of major cytoskeletal structures to the plasma membrane.
Culex quinquefasciatus (taxid: 7176)

>sp|Q170J7|MOEH_AEDAE Moesin/ezrin/radixin homolog 1 OS=Aedes aegypti GN=Moe PE=3 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/62 (90%), Positives = 58/62 (93%)

Query: 4  LMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
           MNVRVTTMDAELEFAIQ +TTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIKLYK
Sbjct: 10 FMNVRVTTMDAELEFAIQQSTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYK 69

Query: 64 KV 65
          KV
Sbjct: 70 KV 71

Involved in connections of major cytoskeletal structures to the plasma membrane.

Aedes aegypti (taxid: 7159)

>sp|Q29GR8|MOEH_DROPS Moesin/ezrin/radixin homolog 1 OS=Drosophila pseudoobscura pseudoobscura GN=Moe PE=3 SV=3

 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 55/61 (90%), Positives = 57/61 (93%)

Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
          +NVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY DS+GD TWIKLYKK
Sbjct: 24 LNVRVTTMDAELEFAIQSTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDSTWIKLYKK 83

Query: 65 V 65
          V
Sbjct: 84 V 84

Involved in connections of major cytoskeletal structures to the plasma membrane.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|P46150|MOEH_DROME Moesin/ezrin/radixin homolog 1 OS=Drosophila melanogaster GN=Moe PE=1 SV=2

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/61 (90%), Positives = 57/61 (93%)

Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
          +NVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY DS+GD TWIKLYKK
Sbjct: 6  LNVRVTTMDAELEFAIQSTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDSTWIKLYKK 65

Query: 65 V 65
          V
Sbjct: 66 V 66

Involved in connections of major cytoskeletal structures to the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q7PS12|MOEH_ANOGA Moesin/ezrin/radixin homolog 1 OS=Anopheles gambiae GN=Moe PE=3 SV=5

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/64 (85%), Positives = 58/64 (90%)

Query: 2  NGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKL 61
          + +MNVRVTTMDAELEFAIQ  TTGKQLFDQ VKTIGLREVWFFGLQY DS+GD TWIKL
Sbjct: 5  SKMMNVRVTTMDAELEFAIQQGTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDNTWIKL 64

Query: 62 YKKV 65
          YKKV
Sbjct: 65 YKKV 68

Involved in connections of major cytoskeletal structures to the plasma membrane.

Anopheles gambiae (taxid: 7165)

>sp|Q32LP2|RADI_BOVIN Radixin OS=Bos taurus GN=RDX PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 55/65 (84%)

Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+K
Sbjct: 1  MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 60

Query: 61 LYKKV 65
          L KKV
Sbjct: 61 LNKKV 65

Probably plays a crucial role in the binding of the barbed end of actin filaments to the plasma membrane.

Bos taurus (taxid: 9913)

>sp|Q9PU45|RADI_CHICK Radixin OS=Gallus gallus GN=RDX PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 55/65 (84%)

Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+K
Sbjct: 1  MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 60

Query: 61 LYKKV 65
          L KKV
Sbjct: 61 LNKKV 65

Probably plays a crucial role in the binding of the barbed end of actin filaments to the plasma membrane.

Gallus gallus (taxid: 9031)

>sp|P26044|RADI_PIG Radixin OS=Sus scrofa GN=RDX PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/61 (81%), Positives = 54/61 (88%)

Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
          +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+KL KK
Sbjct: 5  INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKK 64

Query: 65 V 65
          V
Sbjct: 65 V 65

Probably plays a crucial role in the binding of the barbed end of actin filaments to the plasma membrane.

Sus scrofa (taxid: 9823)

>sp|P26043|RADI_MOUSE Radixin OS=Mus musculus GN=Rdx PE=1 SV=3

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/61 (81%), Positives = 54/61 (88%)

Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
          +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+KL KK
Sbjct: 5  INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKK 64

Query: 65 V 65
          V
Sbjct: 65 V 65

Probably plays a crucial role in the binding of the barbed end of actin filaments to the plasma membrane.

Mus musculus (taxid: 10090)

>sp|P35241|RADI_HUMAN Radixin OS=Homo sapiens GN=RDX PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/61 (81%), Positives = 54/61 (88%)

Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
          +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+KL KK
Sbjct: 5  INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKK 64

Query: 65 V 65
          V
Sbjct: 65 V 65

Probably plays a crucial role in the binding of the barbed end of actin filaments to the plasma membrane.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
122920502	575	Chain A, Moesin From Spodoptera Frugiper	0.928	0.113	0.892	1e-26
357613203	1068	Moesin [Danaus plexippus]	0.857	0.056	0.933	2e-26
270002051	608	hypothetical protein TcasGA2_TC000998 [T	0.9	0.103	0.888	2e-26
340729929	572	PREDICTED: moesin/ezrin/radixin homolog	0.928	0.113	0.876	3e-26
383852553	572	PREDICTED: moesin/ezrin/radixin homolog	0.928	0.113	0.876	3e-26
170053294	572	moesin/ezrin/radixin [Culex quinquefasci	0.871	0.106	0.918	4e-26
157117183	583	moesin/ezrin/radixin [Aedes aegypti] gi|	0.885	0.106	0.903	5e-26
340729931	618	PREDICTED: moesin/ezrin/radixin homolog	0.957	0.108	0.828	6e-26
380018523	618	PREDICTED: moesin/ezrin/radixin homolog	0.957	0.108	0.828	6e-26
328784401	618	PREDICTED: moesin/ezrin/radixin homolog	0.957	0.108	0.828	6e-26

>gi|122920502|pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms Resolution gi|122920505|pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil Domain At 3.0 Angstrom Resolution gi|118133213|gb|ABK60307.1| moesin [Spodoptera frugiperda]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/65 (89%), Positives = 59/65 (90%)

Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   MNVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIK
Sbjct: 1  MPKSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIK 60

Query: 61 LYKKV 65
          LYKKV
Sbjct: 61 LYKKV 65

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357613203|gb|EHJ68371.1| Moesin [Danaus plexippus]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/60 (93%), Positives = 57/60 (95%)

Query: 5   MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
           MNVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIKLYKK
Sbjct: 459 MNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKK 518

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002051|gb|EEZ98498.1| hypothetical protein TcasGA2_TC000998 [Tribolium castaneum]

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/63 (88%), Positives = 59/63 (93%)

Query: 2  NGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKL 61
          + LMNVRVTTMDAELEFAIQ TT+GKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIKL
Sbjct: 8  SKLMNVRVTTMDAELEFAIQQTTSGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKL 67

Query: 62 YKK 64
          YKK
Sbjct: 68 YKK 70

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729929|ref|XP_003403246.1| PREDICTED: moesin/ezrin/radixin homolog 1-like isoform 1 [Bombus terrestris] gi|350396339|ref|XP_003484521.1| PREDICTED: moesin/ezrin/radixin homolog 1-like isoform 1 [Bombus impatiens]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/65 (87%), Positives = 59/65 (90%)

Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   MNVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY D++GDLTWIK
Sbjct: 1  MPKTMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDNKGDLTWIK 60

Query: 61 LYKKV 65
          LYKKV
Sbjct: 61 LYKKV 65

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852553|ref|XP_003701791.1| PREDICTED: moesin/ezrin/radixin homolog 1-like isoform 1 [Megachile rotundata]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/65 (87%), Positives = 59/65 (90%)

Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   MNVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY D++GDLTWIK
Sbjct: 1  MPKTMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDNKGDLTWIK 60

Query: 61 LYKKV 65
          LYKKV
Sbjct: 61 LYKKV 65

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170053294|ref|XP_001862607.1| moesin/ezrin/radixin [Culex quinquefasciatus] gi|215275737|sp|B0WYY2.1|MOEH_CULQU RecName: Full=Moesin/ezrin/radixin homolog 1 gi|167873862|gb|EDS37245.1| moesin/ezrin/radixin [Culex quinquefasciatus]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/61 (91%), Positives = 58/61 (95%)

Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
          MNVRVTTMDAELEFAIQ +TTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIKLYKK
Sbjct: 1  MNVRVTTMDAELEFAIQQSTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKK 60

Query: 65 V 65
          V
Sbjct: 61 V 61

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117183|ref|XP_001652975.1| moesin/ezrin/radixin [Aedes aegypti] gi|122068139|sp|Q170J7.1|MOEH_AEDAE RecName: Full=Moesin/ezrin/radixin homolog 1 gi|108876119|gb|EAT40344.1| AAEL007915-PA [Aedes aegypti]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/62 (90%), Positives = 58/62 (93%)

Query: 4  LMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
           MNVRVTTMDAELEFAIQ +TTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIKLYK
Sbjct: 10 FMNVRVTTMDAELEFAIQQSTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYK 69

Query: 64 KV 65
          KV
Sbjct: 70 KV 71

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729931|ref|XP_003403247.1| PREDICTED: moesin/ezrin/radixin homolog 1-like isoform 2 [Bombus terrestris] gi|350396342|ref|XP_003484522.1| PREDICTED: moesin/ezrin/radixin homolog 1-like isoform 2 [Bombus impatiens]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 60/70 (85%), Gaps = 3/70 (4%)

Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   MNVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY D++GDLTWIK
Sbjct: 1  MPKTMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDNKGDLTWIK 60

Query: 61 LYKKVRCPNN 70
          LYKK   P N
Sbjct: 61 LYKK---PEN 67

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018523|ref|XP_003693177.1| PREDICTED: moesin/ezrin/radixin homolog 1-like [Apis florea]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 60/70 (85%), Gaps = 3/70 (4%)

Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   MNVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY D++GDLTWIK
Sbjct: 1  MPKTMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDNKGDLTWIK 60

Query: 61 LYKKVRCPNN 70
          LYKK   P N
Sbjct: 61 LYKK---PEN 67

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784401|ref|XP_396252.3| PREDICTED: moesin/ezrin/radixin homolog 1 [Apis mellifera]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 60/70 (85%), Gaps = 3/70 (4%)

Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   MNVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY D++GDLTWIK
Sbjct: 1  MPKTMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDNKGDLTWIK 60

Query: 61 LYKKVRCPNN 70
          LYKK   P N
Sbjct: 61 LYKK---PEN 67

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
UNIPROTKB|B0WYY2	572	Moe "Moesin/ezrin/radixin homo	0.871	0.106	0.918	2.1e-25
UNIPROTKB|Q170J7	583	Moe "Moesin/ezrin/radixin homo	0.871	0.104	0.918	2.2e-25
FB|FBgn0011661	578	Moe "Moesin" [Drosophila melan	0.871	0.105	0.901	9.8e-25
UNIPROTKB|Q29GR8	593	Moe "Moesin/ezrin/radixin homo	0.871	0.102	0.901	1.1e-24
UNIPROTKB|Q7PS12	581	Moe "Moesin/ezrin/radixin homo	0.885	0.106	0.887	1.6e-24
UNIPROTKB|D4A5L5	374	Rdx "Protein Rdx" [Rattus norv	0.871	0.163	0.819	1.6e-22
UNIPROTKB|F1NP88	239	Gga.3145 "Uncharacterized prot	0.885	0.259	0.806	4.3e-22
ZFIN|ZDB-GENE-050803-1	585	ezrb "ezrin b" [Danio rerio (t	0.871	0.104	0.803	8.7e-22
UNIPROTKB|F1P0I4	582	RDX "Radixin" [Gallus gallus (	0.871	0.104	0.819	1.1e-21
UNIPROTKB|E9PT65	582	Rdx "Protein Rdx" [Rattus norv	0.871	0.104	0.819	1.1e-21

UNIPROTKB|B0WYY2 Moe "Moesin/ezrin/radixin homolog 1" [Culex quinquefasciatus (taxid:7176)]

 Score = 295 (108.9 bits), Expect = 2.1e-25, P = 2.1e-25
 Identities = 56/61 (91%), Positives = 58/61 (95%)

Query:     5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
             MNVRVTTMDAELEFAIQ +TTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIKLYKK
Sbjct:     1 MNVRVTTMDAELEFAIQQSTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKK 60

Query:    65 V 65
             V
Sbjct:    61 V 61

GO:0003779 "actin binding" evidence=ISS

GO:0005912 "adherens junction" evidence=ISS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=ISS

UNIPROTKB|Q170J7 Moe "Moesin/ezrin/radixin homolog 1" [Aedes aegypti (taxid:7159)]

 Score = 295 (108.9 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 56/61 (91%), Positives = 58/61 (95%)

Query:     5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
             MNVRVTTMDAELEFAIQ +TTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIKLYKK
Sbjct:    11 MNVRVTTMDAELEFAIQQSTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKK 70

Query:    65 V 65
             V
Sbjct:    71 V 71

GO:0003779 "actin binding" evidence=ISS

GO:0005912 "adherens junction" evidence=ISS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=ISS

FB|FBgn0011661 Moe "Moesin" [Drosophila melanogaster (taxid:7227)]

 Score = 289 (106.8 bits), Expect = 9.8e-25, P = 9.8e-25
 Identities = 55/61 (90%), Positives = 57/61 (93%)

Query:     5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
             +NVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY DS+GD TWIKLYKK
Sbjct:     6 LNVRVTTMDAELEFAIQSTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDSTWIKLYKK 65

Query:    65 V 65
             V
Sbjct:    66 V 66

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=NAS;IDA

GO:0045169 "fusome" evidence=IDA

GO:0005912 "adherens junction" evidence=NAS

GO:0003779 "actin binding" evidence=NAS

GO:0008092 "cytoskeletal protein binding" evidence=IEA;ISS

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0007314 "oocyte anterior/posterior axis specification" evidence=IMP

GO:0030029 "actin filament-based process" evidence=NAS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IMP

GO:0016336 "establishment or maintenance of polarity of larval imaginal disc epithelium" evidence=IMP

GO:0035003 "subapical complex" evidence=TAS

GO:0042052 "rhabdomere development" evidence=IMP

GO:0045313 "rhabdomere membrane biogenesis" evidence=IMP

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0007318 "pole plasm protein localization" evidence=TAS

GO:0008104 "protein localization" evidence=TAS

GO:0007315 "pole plasm assembly" evidence=TAS

GO:0042462 "eye photoreceptor cell development" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=TAS

GO:0002009 "morphogenesis of an epithelium" evidence=TAS

GO:0035088 "establishment or maintenance of apical/basal cell polarity" evidence=TAS

GO:0009952 "anterior/posterior pattern specification" evidence=TAS

GO:0016057 "regulation of membrane potential in photoreceptor cell" evidence=IDA

GO:0042048 "olfactory behavior" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|Q29GR8 Moe "Moesin/ezrin/radixin homolog 1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 289 (106.8 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 55/61 (90%), Positives = 57/61 (93%)

Query:     5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
             +NVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY DS+GD TWIKLYKK
Sbjct:    24 LNVRVTTMDAELEFAIQSTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDSTWIKLYKK 83

Query:    65 V 65
             V
Sbjct:    84 V 84

GO:0003779 "actin binding" evidence=ISS

GO:0005912 "adherens junction" evidence=ISS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=ISS

UNIPROTKB|Q7PS12 Moe "Moesin/ezrin/radixin homolog 1" [Anopheles gambiae (taxid:7165)]

 Score = 287 (106.1 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 55/62 (88%), Positives = 57/62 (91%)

Query:     4 LMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
             +MNVRVTTMDAELEFAIQ  TTGKQLFDQ VKTIGLREVWFFGLQY DS+GD TWIKLYK
Sbjct:     7 MMNVRVTTMDAELEFAIQQGTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDNTWIKLYK 66

Query:    64 KV 65
             KV
Sbjct:    67 KV 68

GO:0003779 "actin binding" evidence=ISS

GO:0005912 "adherens junction" evidence=ISS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=ISS

UNIPROTKB|D4A5L5 Rdx "Protein Rdx" [Rattus norvegicus (taxid:10116)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 50/61 (81%), Positives = 54/61 (88%)

Query:     5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
             +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+KL KK
Sbjct:     5 INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKK 64

Query:    65 V 65
             V
Sbjct:    65 V 65

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

UNIPROTKB|F1NP88 Gga.3145 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 50/62 (80%), Positives = 55/62 (88%)

Query:     4 LMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
             L++VRVTTMDAELEFAIQ  TTGKQLFDQ VKTIGLREVWFFGLQY D++G  TW+KL K
Sbjct:     4 LISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNK 63

Query:    64 KV 65
             KV
Sbjct:    64 KV 65

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

ZFIN|ZDB-GENE-050803-1 ezrb "ezrin b" [Danio rerio (taxid:7955)]

 Score = 262 (97.3 bits), Expect = 8.7e-22, P = 8.7e-22
 Identities = 49/61 (80%), Positives = 56/61 (91%)

Query:     5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
             +NVRVTTMDAELEFA+Q +TTGKQLFDQ VKTIGLRE+W+FGLQY DS+G LTW+KL KK
Sbjct:     5 VNVRVTTMDAELEFAVQPSTTGKQLFDQVVKTIGLREIWYFGLQYMDSKGYLTWLKLDKK 64

Query:    65 V 65
             V
Sbjct:    65 V 65

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

UNIPROTKB|F1P0I4 RDX "Radixin" [Gallus gallus (taxid:9031)]

 Score = 261 (96.9 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 50/61 (81%), Positives = 54/61 (88%)

Query:     5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
             +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+KL KK
Sbjct:     4 INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKK 63

Query:    65 V 65
             V
Sbjct:    64 V 64

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

UNIPROTKB|E9PT65 Rdx "Protein Rdx" [Rattus norvegicus (taxid:10116)]

 Score = 261 (96.9 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 50/61 (81%), Positives = 54/61 (88%)

Query:     5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
             +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+KL KK
Sbjct:     5 INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKK 64

Query:    65 V 65
             V
Sbjct:    65 V 65

GO:0001726 "ruffle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030033 "microvillus assembly" evidence=IEA

GO:0030175 "filopodium" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA

GO:0045176 "apical protein localization" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46150	MOEH_DROME	No assigned EC number	0.9016	0.8714	0.1055	no	N/A
B0WYY2	MOEH_CULQU	No assigned EC number	0.9180	0.8714	0.1066	N/A	N/A
Q170J7	MOEH_AEDAE	No assigned EC number	0.9032	0.8857	0.1063	N/A	N/A
P35241	RADI_HUMAN	No assigned EC number	0.8196	0.8714	0.1046	yes	N/A
Q9PU45	RADI_CHICK	No assigned EC number	0.7846	0.9285	0.1114	yes	N/A
Q32LP2	RADI_BOVIN	No assigned EC number	0.7846	0.9285	0.1114	yes	N/A
Q29GR8	MOEH_DROPS	No assigned EC number	0.9016	0.8714	0.1028	no	N/A
P26044	RADI_PIG	No assigned EC number	0.8196	0.8714	0.1046	yes	N/A
Q7PS12	MOEH_ANOGA	No assigned EC number	0.8593	0.9142	0.1101	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	70
pfam09379	79	pfam09379, FERM_N, FERM N-terminal domain	5e-13
smart00295	201	smart00295, B41, Band 4	1e-12

>gnl|CDD|220215 pfam09379, FERM_N, FERM N-terminal domain

 Score = 57.2 bits (139), Expect = 5e-13
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 9  VTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVR 66
          V  +D  +LEF +  + TG++L DQ  + +GLRE  +FGLQ+ D + +  W+ L KK+R
Sbjct: 1  VRLLDGTQLEFTVDKSATGQELLDQVCQRLGLREKDYFGLQFNDKKNERIWLDLDKKLR 59

This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. Length = 79

>gnl|CDD|214604 smart00295, B41, Band 4

 Score = 58.8 bits (143), Expect = 1e-12
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 7  VRVTTMDAE-LEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDL-TWIKLYKK 64
          ++V  +D   LEF +  +TT ++L +   + +G+RE  +FGLQ+ D   DL  W+   K 
Sbjct: 2  LKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLRHWLDPAKT 61

Query: 65 VR 66
          + 
Sbjct: 62 LL 63

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs. Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
KOG3530|consensus	616		99.86
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	99.84
KOG3527|consensus	975		99.77
KOG3531|consensus	1036		99.71
KOG3529|consensus	596		99.63
KOG0792|consensus	1144		99.42
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	99.3
cd01777	87	SNX27_RA Ubiquitin domain of SNX27 (sorting nexin	97.22
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	96.63
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	95.1
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	94.5
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	94.42
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	94.32
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	94.25
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	93.27
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	93.21
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	93.08
PF00788	93	RA: Ras association (RalGDS/AF-6) domain; InterPro	93.01
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	92.16
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	91.89
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	91.22
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	90.89
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	90.08
cd01768	87	RA RA (Ras-associating) ubiquitin domain. The RA (	90.07
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	89.95
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	89.94
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	89.39
smart00455	70	RBD Raf-like Ras-binding domain.	88.59
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	88.17
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	88.13
smart00314	90	RA Ras association (RalGDS/AF-6) domain. RasGTP ef	87.37
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	85.99
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	85.78
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	85.48
cd01787	85	GRB7_RA RA (RAS-associated like) domain of Grb7. G	84.34
KOG3784|consensus	407		84.17
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	83.1
KOG3531|consensus	1036		82.63
PTZ00044	76	ubiquitin; Provisional	82.21
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	82.21

>KOG3530|consensus

Probab=99.86  E-value=1.6e-22  Score=151.72  Aligned_cols=65  Identities=28%  Similarity=0.481  Sum_probs=61.9

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeec
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVR   66 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~   66 (70)
                      ++.+.|+|.|||| .+.++++++++|++|||.||.+|+|+|+|||||+|+|..++.+|||+.|+|+
T Consensus         8 k~~~~C~V~LLd~sdl~~~~pk~akGq~Lld~V~~~ldl~E~DYFGLry~D~~~~~hWLD~tK~I~   73 (616)
T KOG3530|consen    8 KKDVYCRVLLLDGSDLSINFPKTAKGQELLDYVFYHLDLIEKDYFGLRYQDSSKVRHWLDPTKSIK   73 (616)
T ss_pred             CcceEEEEEEecCccceeccCcccchHHHHHHHHHhhceeeeeccceeeechhhcceecCcchhHH
Confidence            4678999999999 7888899999999999999999999999999999999999999999999985

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=99.84  E-value=2.3e-21  Score=111.93  Aligned_cols=59  Identities=37%  Similarity=0.729  Sum_probs=55.1

Q ss_pred             EEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE-ecCCCCeecccCCCeecC
Q psy11813          9 VTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY-ADSRGDLTWIKLYKKVRC   67 (70)
Q Consensus         9 V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y-~d~~~~~~WLd~~k~i~~   67 (70)
                      |++||| +.+|.++++++|++||++||++|+|.|++||||+| .++++..+||+++|+|..
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~   61 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKK   61 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGG
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHH
Confidence            789999 68899999999999999999999999999999999 888999999999999975

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>KOG3527|consensus

Probab=99.77  E-value=1.7e-19  Score=139.82  Aligned_cols=67  Identities=25%  Similarity=0.459  Sum_probs=63.2

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeecCC
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRCP   68 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~~~   68 (70)
                      +|.+.|+|++||+ .++|.++++++|++||+.||+||||+|+|||||.|.++..++.|||+.|+|+.+
T Consensus        29 ~k~~~~~vtlld~s~~~~~~ek~~kg~~~~~~vc~~LnliEkdyfgl~~~~~~~~~~wlD~~k~i~k~   96 (975)
T KOG3527|consen   29 TKDAICKVTLLDGSEYSCDVEKHAKGQVLFDKVCEHLNLLEKDYFGLTYLTSSEQKNWLDPAKEIKKQ   96 (975)
T ss_pred             CCCccceEEEeeCCcceeeeecccccchhHHHHhhccchhhhhhceeEEecCCCCccccccchhhhcc
Confidence            3678999999999 688999999999999999999999999999999999999999999999998754

>KOG3531|consensus

Probab=99.71  E-value=9.8e-18  Score=130.02  Aligned_cols=65  Identities=29%  Similarity=0.558  Sum_probs=61.0

Q ss_pred             CceEEEEEEecCCeEE-EEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeec
Q psy11813          2 NGLMNVRVTTMDAELE-FAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVR   66 (70)
Q Consensus         2 ~~~~~~~V~lLD~~~~-~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~   66 (70)
                      +|...+++.+||++.+ |.|+.+|.|+.||++||+||||.|.|||||.|.|.++.+.|||+.|||.
T Consensus        37 gk~~~~~~~~~~~~~~~f~~~~ka~g~vll~~vc~~lnl~e~dyfglef~~~~~~~~wld~~kpi~  102 (1036)
T KOG3531|consen   37 GKICFFFCVMLDDTTEVFLVQHKAIGQVLLDQVCRHLNLVECDYFGLEFQDINGNHCWLDLEKPIL  102 (1036)
T ss_pred             CceEEEEEEEecCceeEEeecccccchHHHHHHHHhhceeeccccceeeccccCceEEecccchHH
Confidence            5778899999999655 9999999999999999999999999999999999999999999999984

>KOG3529|consensus

Probab=99.63  E-value=4.8e-17  Score=123.13  Aligned_cols=67  Identities=73%  Similarity=1.080  Sum_probs=62.9

Q ss_pred             CCceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeecC
Q psy11813          1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRC   67 (70)
Q Consensus         1 ~~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~~   67 (70)
                      |.+.+.|+|+.+|++.+|-++++++|++||++||+++||.|++||||+|+|+.+..+||.++|++..
T Consensus        10 ~~~~~~~rv~~~d~e~~~~i~~~~t~~~l~dlv~~~~glre~~yfgl~~~d~~~~~~wl~~d~~v~~   76 (596)
T KOG3529|consen   10 MTKPINVRVTTMDAELEFAIQPKTTGKQLFDLVVKTIGLRESWYFGLQYTDSKGEPTWLKLDKKVLD   76 (596)
T ss_pred             ccCCcceeeeehhhhhhhhhCcchhHHHHHHHHhccCCCchhhhcccccccCCCCcchhhccchhhh
Confidence            5678999999999966699999999999999999999999999999999999999999999998764

>KOG0792|consensus

Probab=99.42  E-value=1.3e-13  Score=109.09  Aligned_cols=64  Identities=28%  Similarity=0.567  Sum_probs=59.7

Q ss_pred             eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeee-EEEecCCCCeecccCCCeecC
Q psy11813          4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFG-LQYADSRGDLTWIKLYKKVRC   67 (70)
Q Consensus         4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFG-L~y~d~~~~~~WLd~~k~i~~   67 (70)
                      .+.|++.+||+ .++|++...++||++++.||++|++.|++||| +.+.++.++.+|||++|+++.
T Consensus        22 ~v~~~i~llds~~~eftls~es~gQ~~ld~V~qrL~~~e~~yFgl~~~~~k~~~~rWvdleK~lkk   87 (1144)
T KOG0792|consen   22 CVVCRILLLDSDVVEFTLSSESTGQELLDAVAQRLELREKEYFGLLWSPDKPDQIRWVDLEKPLKK   87 (1144)
T ss_pred             eEEEEEEecCCceEEEEEecCCCchhHHHHHhhhhcccccccccccccCCccCccceeccchhHHH
Confidence            68999999999 78999999999999999999999999999999 667888999999999999863

>smart00295 B41 Band 4

Probab=99.30  E-value=9.8e-12  Score=80.61  Aligned_cols=66  Identities=30%  Similarity=0.581  Sum_probs=59.2

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCe-ecccCCCeecC
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDL-TWIKLYKKVRC   67 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~-~WLd~~k~i~~   67 (70)
                      ++.+.++|.++|| ..++.+++.++++++++.||++++|.+..||||.+.+..+.. .|+++.+++..
T Consensus         1 ~~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~   68 (207)
T smart00295        1 PKPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLD   68 (207)
T ss_pred             CCcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHH
Confidence            3678999999999 678999999999999999999999999999999999876555 89999888753

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27)

Probab=97.22  E-value=0.00044  Score=41.58  Aligned_cols=48  Identities=17%  Similarity=0.328  Sum_probs=42.2

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceee--eeeeEEEecC
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREV--WFFGLQYADS   52 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~--dYFGL~y~d~   52 (70)
                      +..+|.+.|| .+.+++.++.+..++++.||+.++|.+.  -||+|--..+
T Consensus         2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFev~~   52 (87)
T cd01777           2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFALFEVIN   52 (87)
T ss_pred             eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhheeeeEEec
Confidence            5688999999 7899999999999999999999999765  5999976643

SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=96.63  E-value=0.011  Score=34.81  Aligned_cols=53  Identities=19%  Similarity=0.298  Sum_probs=45.4

Q ss_pred             EEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCee
Q psy11813          5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLT   57 (70)
Q Consensus         5 ~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~   57 (70)
                      +.++++.=++.+.|.+++...=++|.+.|.+.+++.+..-|-|.|.|.+|.+.
T Consensus         1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v   53 (82)
T cd06407           1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWV   53 (82)
T ss_pred             CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeE
Confidence            46777776667889999999999999999999999766789999999887654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=95.10  E-value=0.047  Score=31.88  Aligned_cols=42  Identities=17%  Similarity=0.253  Sum_probs=30.0

Q ss_pred             CCceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceee
Q psy11813          1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREV   42 (70)
Q Consensus         1 ~~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~   42 (70)
                      |...|.+||+.-||...+++++.++=.+|+++|.+.+++...
T Consensus         1 ~~~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~   42 (80)
T PF11543_consen    1 MASSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDS   42 (80)
T ss_dssp             -----EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TT
T ss_pred             CCccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCc
Confidence            678899999999998889999999999999999999998644

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>smart00666 PB1 PB1 domain

Probab=94.50  E-value=0.23  Score=28.03  Aligned_cols=49  Identities=22%  Similarity=0.411  Sum_probs=40.6

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCC
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGD   55 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~   55 (70)
                      +.++|.. .+ ...+.+++..+=.+|.++|.+.+++.. .-|.|.|.|.+|.
T Consensus         2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~-~~~~l~Y~Dedgd   51 (81)
T smart00666        2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDN-QSFTLKYQDEDGD   51 (81)
T ss_pred             ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCC-CCeEEEEECCCCC
Confidence            4677777 44 566999999999999999999999765 5689999988765

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=94.42  E-value=0.26  Score=29.21  Aligned_cols=51  Identities=20%  Similarity=0.260  Sum_probs=42.8

Q ss_pred             EEEEEecCCeEEEEEcc--cCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecc
Q psy11813          6 NVRVTTMDAELEFAIQH--TTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWI   59 (70)
Q Consensus         6 ~~~V~lLD~~~~~~v~~--~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WL   59 (70)
                      +++++.=.+.+.|.+++  ..+=.+|...|-...+|.   -|.|.|.|.++.+.=|
T Consensus         2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~---~f~lKYlDde~e~v~l   54 (81)
T cd06396           2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN---DIQIKYVDEENEEVSV   54 (81)
T ss_pred             EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC---cceeEEEcCCCCEEEE
Confidence            56777767788999999  668899999999999998   8999999998876543

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=94.32  E-value=0.14  Score=28.26  Aligned_cols=46  Identities=22%  Similarity=0.390  Sum_probs=39.5

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEe
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYA   50 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~   50 (70)
                      |++.|...++ .+.+.|.++++=+.|++..|+..++....-|-|.|.
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd   47 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD   47 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC
Confidence            5788999999 788999999999999999999999988666677774

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=94.25  E-value=0.31  Score=29.16  Aligned_cols=49  Identities=20%  Similarity=0.265  Sum_probs=43.5

Q ss_pred             eEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCC
Q psy11813          4 LMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGD   55 (70)
Q Consensus         4 ~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~   55 (70)
                      .+.++|+.-++..-+.+++...=++|.++|.+.+++.  .-|.++|.|. |.
T Consensus         2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~--~~~~iKykDE-GD   50 (86)
T cd06408           2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK--RRLKIKMKDD-GD   50 (86)
T ss_pred             cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC--CceEEEEEcC-CC
Confidence            5788999877788899999999999999999999995  6999999988 53

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=93.27  E-value=0.3  Score=29.05  Aligned_cols=51  Identities=16%  Similarity=0.213  Sum_probs=39.9

Q ss_pred             EEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCee
Q psy11813          6 NVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLT   57 (70)
Q Consensus         6 ~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~   57 (70)
                      +-+|...++.-.|..+..-+=..|.++++...+|.+-. ||+.|.|.+|...
T Consensus         2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~-~~vtYiDeD~D~I   52 (82)
T cd06397           2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIK-VGVTYIDNDNDEI   52 (82)
T ss_pred             eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhH-eEEEEEcCCCCEE
Confidence            45677777766666666666677999999999999876 9999999876544

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=93.21  E-value=0.52  Score=28.18  Aligned_cols=54  Identities=19%  Similarity=0.176  Sum_probs=42.7

Q ss_pred             EEEEEecCCeEEEEEcc-----cCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecc
Q psy11813          6 NVRVTTMDAELEFAIQH-----TTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWI   59 (70)
Q Consensus         6 ~~~V~lLD~~~~~~v~~-----~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WL   59 (70)
                      .++|..=+....|.++.     ...-.+|.++|.+.+++..-.-|-|+|.|.++...=|
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l   60 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTL   60 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEE
Confidence            46677644466688875     5788999999999999988788999999987765433

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=93.08  E-value=0.45  Score=27.69  Aligned_cols=40  Identities=28%  Similarity=0.403  Sum_probs=35.9

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE   41 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E   41 (70)
                      ...|+++|..+++ .+.|.|.+.++=+.|+++.|++-++..
T Consensus         9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~   49 (87)
T cd01763           9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSM   49 (87)
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCc
Confidence            3568999999998 789999999999999999999999854

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []

Probab=93.01  E-value=0.81  Score=25.89  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=42.5

Q ss_pred             EEEEEEecCCe----E-EEEEcccCchhhhHHHHhcccCc-eeeeeeeEE-EecCCCCeecc
Q psy11813          5 MNVRVTTMDAE----L-EFAIQHTTTGKQLFDQTVKTIGL-REVWFFGLQ-YADSRGDLTWI   59 (70)
Q Consensus         5 ~~~~V~lLD~~----~-~~~v~~~~~G~~L~d~Vc~~L~L-~E~dYFGL~-y~d~~~~~~WL   59 (70)
                      -.++|..-++.    . .+.|.+.++.+++...+++.+++ .+...|.|. +....+..+=|
T Consensus         3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L   64 (93)
T PF00788_consen    3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPL   64 (93)
T ss_dssp             EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEE
T ss_pred             eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEc
Confidence            46788888864    5 49999999999999999999999 666789996 54444443333

This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=92.16  E-value=0.85  Score=25.43  Aligned_cols=49  Identities=24%  Similarity=0.366  Sum_probs=40.4

Q ss_pred             EEEEEecCCeEEEEEc-ccCchhhhHHHHhcccCceeeeeeeEEEecCCCC
Q psy11813          6 NVRVTTMDAELEFAIQ-HTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGD   55 (70)
Q Consensus         6 ~~~V~lLD~~~~~~v~-~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~   55 (70)
                      .++|+.-++...+.+. ..++=.+|.++|++.+++.. .-|.+.|.|.++.
T Consensus         2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~-~~~~l~y~D~e~d   51 (81)
T cd05992           2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDA-VSFKLKYPDEDGD   51 (81)
T ss_pred             cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCC-CcEEEEeeCCCCC
Confidence            4566666667778888 88899999999999999876 6789999998774

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=91.89  E-value=0.49  Score=26.00  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=33.1

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceee
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREV   42 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~   42 (70)
                      |.+.|..++| ++++.+++..+-.+|-+++++..++...
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~   39 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ   39 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChh
Confidence            5688999999 7889999999999999999999886433

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=91.22  E-value=1.3  Score=24.89  Aligned_cols=52  Identities=23%  Similarity=0.258  Sum_probs=43.2

Q ss_pred             eEEEEEEecCCeEE-EEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCe
Q psy11813          4 LMNVRVTTMDAELE-FAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDL   56 (70)
Q Consensus         4 ~~~~~V~lLD~~~~-~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~   56 (70)
                      ++.+++..-++... +.+.+..+=.+|.+.|.+.+++. ..=|.|.|.|.+|..
T Consensus         1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~-~~~~~l~Y~D~dgD~   53 (84)
T PF00564_consen    1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLL-DEDFQLKYKDEDGDL   53 (84)
T ss_dssp             SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTS-TSSEEEEEEETTSSE
T ss_pred             CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCC-CccEEEEeeCCCCCE
Confidence            35677887777555 89999999999999999999987 667899999988744

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=90.89  E-value=0.3  Score=27.60  Aligned_cols=49  Identities=18%  Similarity=0.313  Sum_probs=31.5

Q ss_pred             cCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeec
Q psy11813         12 MDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVR   66 (70)
Q Consensus        12 LD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~   66 (70)
                      -++ ...+.+.+.++=.++++++|++.++... -++|.|.++.     ||++-|++
T Consensus         4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~-~~~L~h~~k~-----ldlslp~R   53 (65)
T PF11470_consen    4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPS-SYDLKHNNKP-----LDLSLPFR   53 (65)
T ss_dssp             TTS-EEEE---TTSBHHHHHHHHHHHTT--GG-G-EEEETTEE-----ESSS-BHH
T ss_pred             cCCcEEEEEECCCCCHHHHHHHHHHHcCCCcc-ceEEEECCEE-----ecccccee
Confidence            445 6779999999999999999999998655 6688875321     56665553

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=90.08  E-value=1.4  Score=26.25  Aligned_cols=49  Identities=18%  Similarity=0.374  Sum_probs=40.0

Q ss_pred             ecCC-eEEEEEcccCchhhhHHHHhcccCcee--eeeeeEEEecCCCCeecc
Q psy11813         11 TMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE--VWFFGLQYADSRGDLTWI   59 (70)
Q Consensus        11 lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E--~dYFGL~y~d~~~~~~WL   59 (70)
                      -..| .+.|.+.+...=.+|...|.+++++..  ..-|.|.|.|.++.+.=|
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~Vll   58 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLI   58 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEE
Confidence            3346 577999998888999999999999865  478999999988876543

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd01768 RA RA (Ras-associating) ubiquitin domain

Probab=90.07  E-value=1.6  Score=24.82  Aligned_cols=47  Identities=21%  Similarity=0.267  Sum_probs=38.6

Q ss_pred             EEEEecC---Ce-EEEEEcccCchhhhHHHHhcccCce-eeeeeeEEEecCC
Q psy11813          7 VRVTTMD---AE-LEFAIQHTTTGKQLFDQTVKTIGLR-EVWFFGLQYADSR   53 (70)
Q Consensus         7 ~~V~lLD---~~-~~~~v~~~~~G~~L~d~Vc~~L~L~-E~dYFGL~y~d~~   53 (70)
                      ++|..-|   ++ ..+.|++.++.+++...+.+..++. ....|.|.-.-.+
T Consensus         2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~   53 (87)
T cd01768           2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGD   53 (87)
T ss_pred             EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECC
Confidence            4667666   54 5699999999999999999999998 6678999875444

The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=89.95  E-value=1.3  Score=25.03  Aligned_cols=47  Identities=19%  Similarity=0.166  Sum_probs=39.2

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      ....++|.+.|| .+.-...+.++-++|++-|-.++...+...|-|.-
T Consensus         5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~   52 (82)
T PF00789_consen    5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELIT   52 (82)
T ss_dssp             SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEE
T ss_pred             CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEe
Confidence            457899999999 78888889999999999999988877665577753

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>smart00213 UBQ Ubiquitin homologues

Probab=89.94  E-value=0.98  Score=23.61  Aligned_cols=44  Identities=18%  Similarity=0.299  Sum_probs=34.8

Q ss_pred             EEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         5 ~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      |.+.|...++...+.+++.++..+|-.++.+..++.. +..-|.|
T Consensus         1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~-~~~~L~~   44 (64)
T smart00213        1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPV-EQQRLIY   44 (64)
T ss_pred             CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCH-HHEEEEE
Confidence            4678888886677999999999999999999998743 3344444

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=89.39  E-value=1.7  Score=24.66  Aligned_cols=38  Identities=16%  Similarity=0.185  Sum_probs=30.4

Q ss_pred             EEEEEecCCe-EEEEEcccCchhhhHHHHhcccCceeee
Q psy11813          6 NVRVTTMDAE-LEFAIQHTTTGKQLFDQTVKTIGLREVW   43 (70)
Q Consensus         6 ~~~V~lLD~~-~~~~v~~~~~G~~L~d~Vc~~L~L~E~d   43 (70)
                      .|+|.|-|++ ..+.+.+.-+-++.+..+|+.-+|.-.+
T Consensus         2 ~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~   40 (71)
T PF02196_consen    2 TCRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPEC   40 (71)
T ss_dssp             EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCC
T ss_pred             eEEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHH
Confidence            5899999994 5699999999999999999999875443

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

>smart00455 RBD Raf-like Ras-binding domain

Probab=88.59  E-value=2  Score=24.36  Aligned_cols=44  Identities=14%  Similarity=0.136  Sum_probs=35.5

Q ss_pred             EEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEe
Q psy11813          6 NVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYA   50 (70)
Q Consensus         6 ~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~   50 (70)
                      .|+|.+-|+ ...+.+.+.-+-+++++.+|+.-|| +.+.-.+...
T Consensus         1 ~~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l-~~~~~~v~~~   45 (70)
T smart00455        1 TCKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGL-NPECCVVRLR   45 (70)
T ss_pred             CeEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCC-CHHHEEEEEc
Confidence            378999999 6779999999999999999999998 3444445443

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=88.17  E-value=1  Score=25.87  Aligned_cols=44  Identities=11%  Similarity=0.113  Sum_probs=35.3

Q ss_pred             EEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEe
Q psy11813          6 NVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYA   50 (70)
Q Consensus         6 ~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~   50 (70)
                      .|+|.|-|| ...+.+.+..+-+++++.+|+.-+|.-..| .|...
T Consensus         1 ~~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~-~v~~~   45 (72)
T cd01760           1 LCRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECC-DVFLL   45 (72)
T ss_pred             CEEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHE-EEEEe
Confidence            489999999 566999999999999999999999864433 34443

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=88.13  E-value=1.6  Score=23.66  Aligned_cols=44  Identities=23%  Similarity=0.393  Sum_probs=35.1

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      |.+.|..++| +..+.+++..+-.+|-+++.+..++. .+..-|.|
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~q~L~~   45 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIP-VEQQRLIY   45 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC-HHHeEEEE
Confidence            5678999998 78899999999999999999998863 33334444

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>smart00314 RA Ras association (RalGDS/AF-6) domain

Probab=87.37  E-value=3.8  Score=23.40  Aligned_cols=47  Identities=17%  Similarity=0.163  Sum_probs=38.2

Q ss_pred             EEEEEEecC---Ce-EEEEEcccCchhhhHHHHhcccCcee-eeeeeEEEec
Q psy11813          5 MNVRVTTMD---AE-LEFAIQHTTTGKQLFDQTVKTIGLRE-VWFFGLQYAD   51 (70)
Q Consensus         5 ~~~~V~lLD---~~-~~~~v~~~~~G~~L~d~Vc~~L~L~E-~dYFGL~y~d   51 (70)
                      ..++|..-|   ++ ..+.|.+.++.++++..+.+..++.. ...|.|.-.-
T Consensus         3 ~~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~   54 (90)
T smart00314        3 FVLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVL   54 (90)
T ss_pred             eEEEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEe
Confidence            357777766   64 56999999999999999999999976 5677877654

RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=85.99  E-value=3.7  Score=24.24  Aligned_cols=47  Identities=13%  Similarity=0.147  Sum_probs=38.6

Q ss_pred             EEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCC
Q psy11813          5 MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSR   53 (70)
Q Consensus         5 ~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~   53 (70)
                      ..++|++=+ ++-+.+++...=++|.++|+++|.|. .+--=|+|.+..
T Consensus         3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~-~e~i~LsYkde~   49 (80)
T cd06406           3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELP-AEHITLSYKSEA   49 (80)
T ss_pred             eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCC-chhcEEEeccCC
Confidence            567788776 78899999999999999999999995 333678897654

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=85.78  E-value=2.8  Score=23.75  Aligned_cols=35  Identities=20%  Similarity=0.386  Sum_probs=31.7

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCc
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGL   39 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L   39 (70)
                      |.+.|..+.| ++.+.+++.++-.+|-+++.+..++
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i   38 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGV   38 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCC
Confidence            7888999998 7889999999999999999998886

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=85.48  E-value=2.6  Score=23.40  Aligned_cols=38  Identities=13%  Similarity=0.183  Sum_probs=33.0

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceee
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREV   42 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~   42 (70)
                      |.+.|..++| +..+.+++..+-.+|-+++++.-|+...
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~   39 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEE   39 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHH
Confidence            5678999999 7789999999999999999999987543

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7

Probab=84.34  E-value=3.8  Score=24.47  Aligned_cols=45  Identities=13%  Similarity=0.113  Sum_probs=38.5

Q ss_pred             eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEE
Q psy11813          4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQ   48 (70)
Q Consensus         4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~   48 (70)
                      ...|+|.+.|| +-.+.|+...+.+++.+..++.-.+.......|-
T Consensus         2 k~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~Lv   47 (85)
T cd01787           2 KQVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLV   47 (85)
T ss_pred             ceEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence            45799999999 6779999999999999999999888776666664

Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.

>KOG3784|consensus

Probab=84.17  E-value=2.1  Score=32.12  Aligned_cols=47  Identities=15%  Similarity=0.346  Sum_probs=38.4

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee--eeeeeEEEec
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE--VWFFGLQYAD   51 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E--~dYFGL~y~d   51 (70)
                      ....|-+.+| .+++++-.+.+...+|..||..|++..  .-||||.-..
T Consensus       108 v~l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l~~e~i~~f~lFlvr  157 (407)
T KOG3784|consen  108 VELDVFLPNGEKITINCLVSDTASLVLKSVCRKLGLPDELIGYFGLFLVR  157 (407)
T ss_pred             eEEEEEccCCceEEEEEEecccHHHHHHHHHhhcCCchHhhhheeeeEEe
Confidence            4556667788 688999999999999999999999962  2499998753

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=83.10  E-value=4  Score=22.47  Aligned_cols=35  Identities=14%  Similarity=0.250  Sum_probs=31.2

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCc
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGL   39 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L   39 (70)
                      |.+.|..++| ++.+.+++..+-.+|-+++++..++
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i   36 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGC   36 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCC
Confidence            5678888999 7889999999999999999998886

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>KOG3531|consensus

Probab=82.63  E-value=0.05  Score=44.02  Aligned_cols=62  Identities=3%  Similarity=-0.287  Sum_probs=49.0

Q ss_pred             eEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEec-CCCCeecccCCCee
Q psy11813          4 LMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYAD-SRGDLTWIKLYKKV   65 (70)
Q Consensus         4 ~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d-~~~~~~WLd~~k~i   65 (70)
                      ...+++..++....+-+++.+.|+.+|..+|..+++.|.+|||++|.- .-..+.|+|.+++-
T Consensus       177 ~~~l~~~~~~p~q~~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~~  239 (1036)
T KOG3531|consen  177 REHLAHTRYLPNQDELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDREGTK  239 (1036)
T ss_pred             ceeeeeeecCchHHHHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcccch
Confidence            346777777763366678899999999999999999999999999832 23456799988763

>PTZ00044 ubiquitin; Provisional

Probab=82.21  E-value=4.2  Score=22.40  Aligned_cols=37  Identities=16%  Similarity=0.229  Sum_probs=32.4

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE   41 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E   41 (70)
                      |.+.|..++| +..+.+++..+-.+|=.++.+..++..
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~   38 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDV   38 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH
Confidence            4678999999 788999999999999999999999743

>cd01803 Ubiquitin Ubiquitin

Probab=82.21  E-value=4.1  Score=22.17  Aligned_cols=36  Identities=14%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      |.+.|..++| .+.+.+++..+-.+|-+++.+..++.
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~   37 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   37 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCC
Confidence            4678999998 78899999999999999999998874

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	70
2i1j_A	575	Moesin From Spodoptera Frugiperda At 2.1 Angstroms		2e-29
1j19_A	317	Crystal Structure Of The Radxin Ferm Domain Complex		4e-24
2zpy_A	312	Crystal Structure Of The Mouse Radxin Ferm Domain C		4e-24
2emt_A	322	Crystal Structure Analysis Of The Radixin Ferm Doma		4e-24
2d10_A	312	Crystal Structure Of The Radixin Ferm Domain Comple		4e-24
2d2q_A	310	Crystal Structure Of The Dimerized Radixin Ferm Dom		4e-24
1gc6_A	297	Crystal Structure Of The Radixin Ferm Domain Comple		4e-24
1e5w_A	346	Structure Of Isolated Ferm Domain And First Long He		4e-23
1sgh_A	297	Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptid		5e-23
1ni2_A	296	Structure Of The Active Ferm Domain Of Ezrin Length		2e-22
1ef1_A	294	Crystal Structure Of The Moesin Ferm DomainTAIL DOM		2e-22
1h4r_A	314	Crystal Structure Of The Ferm Domain Of Merlin, The		3e-12
1h4r_B	314	Crystal Structure Of The Ferm Domain Of Merlin, The		3e-12
1isn_A	323	Crystal Structure Of Merlin Ferm Domain Length = 32		1e-11
3u8z_A	300	Human Merlin Ferm Domain Length = 300		1e-11

>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms Resolution Length = 575

Iteration: 1
 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/65 (89%), Positives = 59/65 (90%)
Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   MNVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIK
Sbjct: 1  MPKSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIK 60
Query: 61 LYKKV 65
          LYKKV
Sbjct: 61 LYKKV 65

>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With The Icam-2 Cytoplasmic Peptide Length = 317

Iteration: 1
 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 55/65 (84%)
Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+K
Sbjct: 1  MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 60
Query: 61 LYKKV 65
          L KKV
Sbjct: 61 LNKKV 65

>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain Complexed With The Mouse Cd44 Cytoplasmic Peptide Length = 312

Iteration: 1
 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 55/65 (84%)
Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+K
Sbjct: 3  MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 62
Query: 61 LYKKV 65
          L KKV
Sbjct: 63 LNKKV 67

>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain Complexed With Adhesion Molecule Psgl-1 Length = 322

Iteration: 1
 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 55/65 (84%)
Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+K
Sbjct: 3  MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 62
Query: 61 LYKKV 65
          L KKV
Sbjct: 63 LNKKV 67

>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With The Nherf-1 C-Terminal Tail Peptide Length = 312

Iteration: 1
 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 55/65 (84%)
Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+K
Sbjct: 3  MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 62
Query: 61 LYKKV 65
          L KKV
Sbjct: 63 LNKKV 67

>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain Length = 310

Iteration: 1
 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 55/65 (84%)
Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+K
Sbjct: 1  MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 60
Query: 61 LYKKV 65
          L KKV
Sbjct: 61 LNKKV 65

>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With Inositol-(1,4,5)-Triphosphate Length = 297

Iteration: 1
 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 55/65 (84%)
Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKT+GLREVWFFGLQY DS+G  TW+K
Sbjct: 1  MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLK 60
Query: 61 LYKKV 65
          L KKV
Sbjct: 61 LNKKV 65

>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of Moesin Length = 346

Iteration: 1
 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 55/65 (84%)
Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   ++VRVTTMDAELEFAIQ  TTGKQLFDQ VKTIGLREVWFFGLQY D++G  TW+K
Sbjct: 1  MPKTISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLK 60
Query: 61 LYKKV 65
          L KKV
Sbjct: 61 LNKKV 65

>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide Length = 297

Iteration: 1
 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 55/65 (84%)
Query: 1  MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIK 60
          M   ++VRVTTMDAELEFAIQ  TTGKQLFDQ VKTIGLREVWFFGLQY D++G  TW+K
Sbjct: 1  MPKTISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLK 60
Query: 61 LYKKV 65
          L KKV
Sbjct: 61 LNKKV 65

>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin Length = 296

Iteration: 1
 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 53/63 (84%)
Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
          +NVRVTTMDAELEFAIQ  TTGKQLFDQ VKTIGLREVW+FGL Y D++G  TW+KL KK
Sbjct: 4  INVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWYFGLHYVDNKGFPTWLKLDKK 63
Query: 65 VRC 67
          V  
Sbjct: 64 VSA 66

>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN COMPLEX Length = 294

Iteration: 1
 Score =  100 bits (250), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/61 (78%), Positives = 53/61 (86%)
Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
          ++VRVTT DAELEFAIQ  TTGKQLFDQ VKTIGLREVWFFGLQY D++G  TW+KL KK
Sbjct: 2  ISVRVTTXDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK 61
Query: 65 V 65
          V
Sbjct: 62 V 62

>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 7  VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKV 65
          VR+ TMDAE+EF  +    GK LFD   +T+GLRE WFFGLQY   +  + W+K+ KKV
Sbjct: 25 VRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKV 82

>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 7  VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKV 65
          VR+ TMDAE+EF  +    GK LFD   +T+GLRE WFFGLQY   +  + W+K+ KKV
Sbjct: 25 VRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKV 82

>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain Length = 323

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 7  VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKV 65
          VR+ TMDAE+EF  +    GK LFD   +T+GLRE WFFGLQY   +  + W+K+ KKV
Sbjct: 7  VRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKV 64

>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain Length = 300

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 7  VRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKV 65
          VR+ TMDAE+EF  +    GK LFD   +T+GLRE WFFGLQY   +  + W+K+ KKV
Sbjct: 12 VRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKV 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	2e-19
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	4e-19
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	6e-17
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	5e-16
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	2e-12
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	1e-07
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	2e-07
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	4e-07

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Length = 294

 Score = 77.7 bits (191), Expect = 2e-19
 Identities = 49/62 (79%), Positives = 54/62 (87%)

Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
          ++VRVTTMDAELEFAIQ  TTGKQLFDQ VKTIGLREVWFFGLQY D++G  TW+KL KK
Sbjct: 2  ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK 61

Query: 65 VR 66
          V 
Sbjct: 62 VT 63

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575

 Score = 78.0 bits (191), Expect = 4e-19
 Identities = 57/62 (91%), Positives = 58/62 (93%)

Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
          MNVRVTTMDAELEFAIQ TTTGKQLFDQ VKTIGLREVWFFGLQY DS+GDLTWIKLYKK
Sbjct: 5  MNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKK 64

Query: 65 VR 66
          V 
Sbjct: 65 VM 66

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Length = 296

 Score = 71.1 bits (174), Expect = 6e-17
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 5  MNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
           + +V+ +D    E  ++    G+ L  +  + + L E  +FGL   D+    TW+   K
Sbjct: 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAK 77

Query: 64 KVR 66
          +++
Sbjct: 78 EIK 80

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Length = 314

 Score = 68.9 bits (168), Expect = 5e-16
 Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 4  LMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
             VR+ TMDAE+EF  +    GK LFD   +T+GLRE WFFGLQY   +  + W+K+ K
Sbjct: 22 TFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTI-KDTVAWLKMDK 80

Query: 64 KVR 66
          KV 
Sbjct: 81 KVL 83

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Length = 371

 Score = 59.1 bits (143), Expect = 2e-12
 Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 5/67 (7%)

Query: 5   MNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGD----LTWI 59
             +++  +D       +  + T   +       IG+     + L            L W+
Sbjct: 86  RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWL 145

Query: 60  KLYKKVR 66
              + +R
Sbjct: 146 DHGRTLR 152

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Length = 555

 Score = 45.7 bits (107), Expect = 1e-07
 Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 5   MNVRVTTMDAE-LEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
           M   V        +  I   TT  ++ ++ ++ + + +       +  +      I+   
Sbjct: 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRT 276

Query: 64  KV 65
            V
Sbjct: 277 VV 278

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Length = 655

 Score = 45.3 bits (106), Expect = 2e-07
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 5   MNVRVTTMDAELE-FAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
           + + VT MD   +       TT ++L +     I L++ + F L  A      +      
Sbjct: 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFDKVSSLGSGSD 323

Query: 64  KV 65
            V
Sbjct: 324 HV 325

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} Length = 322

 Score = 44.2 bits (104), Expect = 4e-07
 Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 18/78 (23%)

Query: 4  LMNVRVTTMDA---ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLT--- 57
             VR+  MD     +E    + TT +Q+ +  ++ +      +F +        L    
Sbjct: 5  FEKVRIYRMDGSYRSVELKHGNNTTVQQIMEG-MR-LSQETQQYFTIWICSENLSLQLKP 62

Query: 58 ----------WIKLYKKV 65
                    W ++  ++
Sbjct: 63 YHKPLQHVRDWPEILAEL 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	99.73
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	99.72
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	99.72
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	99.71
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	99.52
2al6_A	375	Focal adhesion kinase 1; transferase; 2.35A {Gallu	99.24
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.24
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	99.19
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	99.18
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	98.47
4eku_A	392	Protein-tyrosine kinase 2-beta; proline-rich tyros	98.35
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.15
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.28
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	95.46
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	93.31
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	93.29
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	93.18
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	92.89
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	92.67
1wgr_A	100	Growth factor receptor-bound protein 7; RA domain,	92.63
2pjh_A	80	Protein NPL4, nuclear protein localization protein	92.44
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	91.8
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	91.47
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	91.32
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	91.1
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	91.07
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	90.92
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	90.86
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	90.83
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	90.71
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	90.66
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	90.29
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	90.28
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	89.98
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	89.89
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	89.86
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	89.75
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	89.63
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	89.47
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	88.35
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	88.35
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	88.34
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	88.22
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	87.93
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	87.61
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	87.47
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	87.24
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	86.56
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	85.61
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	85.59
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	85.08
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	85.01
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	83.51
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	82.53
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	81.95
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	80.85
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	80.48
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	80.46
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	80.43
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	80.42
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	80.35

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A

Probab=99.73  E-value=2e-18  Score=118.94  Aligned_cols=65  Identities=22%  Similarity=0.389  Sum_probs=60.2

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeec
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVR   66 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~   66 (70)
                      .+.+.|+|.++|| ..++.|+++++|++|++.||++|||.|.+||||+|.+.++..+|||++|+|+
T Consensus        15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~   80 (296)
T 3qij_A           15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIK   80 (296)
T ss_dssp             --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHH
T ss_pred             CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHH
Confidence            4668999999999 6789999999999999999999999999999999999889999999999885

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=99.72  E-value=6.7e-18  Score=116.14  Aligned_cols=66  Identities=47%  Similarity=0.834  Sum_probs=61.1

Q ss_pred             CCceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeecC
Q psy11813          1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRC   67 (70)
Q Consensus         1 ~~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~~   67 (70)
                      +++.+.|+|.++||++++.++++++|++|++.||++|||.|.+||||+|. .++..+||+++++|..
T Consensus        19 ~~~~~~~~V~lldg~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~~~wL~~~~~i~~   84 (314)
T 1h4r_A           19 QPKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKVLD   84 (314)
T ss_dssp             --CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTEEEECCTTSBGGG
T ss_pred             CCCeeEEEEEeCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE-eCCcCeeCCCccCHHH
Confidence            46789999999999888999999999999999999999999999999998 7788999999999875

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=99.72  E-value=9.3e-18  Score=114.25  Aligned_cols=64  Identities=77%  Similarity=1.152  Sum_probs=61.1

Q ss_pred             eEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeecC
Q psy11813          4 LMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRC   67 (70)
Q Consensus         4 ~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~~   67 (70)
                      ++.|+|.++||++++.++++++|+++++.||++|||.|.+||||+|.+.++..+|||++++|..
T Consensus         1 ~i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~   64 (294)
T 1ef1_A            1 TISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTA   64 (294)
T ss_dssp             CEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGG
T ss_pred             CEEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHh
Confidence            4789999999998999999999999999999999999999999999999999999999999875

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=99.71  E-value=1e-17  Score=124.73  Aligned_cols=67  Identities=87%  Similarity=1.265  Sum_probs=63.0

Q ss_pred             CCceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeecC
Q psy11813          1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRC   67 (70)
Q Consensus         1 ~~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~~   67 (70)
                      |++++.|+|.++||+++|.|+++++|++||+.||++|||.|.+||||+|.++.+..+|||++++|..
T Consensus         1 ~~k~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~   67 (575)
T 2i1j_A            1 MPKSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQ   67 (575)
T ss_dssp             --CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGG
T ss_pred             CCceEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHH
Confidence            7899999999999988999999999999999999999999999999999999999999999999875

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=99.52  E-value=8.7e-15  Score=102.77  Aligned_cols=66  Identities=12%  Similarity=0.214  Sum_probs=55.5

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecC----CCCeecccCCCeecC
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS----RGDLTWIKLYKKVRC   67 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~----~~~~~WLd~~k~i~~   67 (70)
                      ++.+.|+|.++|| ...+.++++++|+++++.||++|+|.|.+||||.+.+.    ++...||+++|+++.
T Consensus        83 ~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~  153 (371)
T 3ivf_A           83 KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLRE  153 (371)
T ss_dssp             ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGG
T ss_pred             CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHh
Confidence            4678999999999 57799999999999999999999999999999999864    578899999999864

>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A

Probab=99.24  E-value=5.6e-12  Score=89.08  Aligned_cols=62  Identities=13%  Similarity=0.200  Sum_probs=55.2

Q ss_pred             EEEEEEecCC-----eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecC-CCCeecccCCCeec
Q psy11813          5 MNVRVTTMDA-----ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS-RGDLTWIKLYKKVR   66 (70)
Q Consensus         5 ~~~~V~lLD~-----~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~-~~~~~WLd~~k~i~   66 (70)
                      -.|+|.++||     ...|.++++++|++|++.||++++|.|.+||||++.+. .+..+||+++++|.
T Consensus         8 ~~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~   75 (375)
T 2al6_A            8 KVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVS   75 (375)
T ss_dssp             EEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHH
T ss_pred             ceEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchh
Confidence            3567888888     55699999999999999999999999999999999875 57789999999985

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.24  E-value=4e-12  Score=94.51  Aligned_cols=62  Identities=15%  Similarity=0.222  Sum_probs=55.5

Q ss_pred             EEEEEecCCe----E-EEEEcccCchhhhHHHHhcccCceeeeeeeEEEecC-CCCeecccCCCeecC
Q psy11813          6 NVRVTTMDAE----L-EFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS-RGDLTWIKLYKKVRC   67 (70)
Q Consensus         6 ~~~V~lLD~~----~-~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~-~~~~~WLd~~k~i~~   67 (70)
                      .|.|.+.|++    . ++.++.++++++|++.||++++|.|++||||+|.+. .++.+||+++++|..
T Consensus         9 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~~~~   76 (656)
T 2j0j_A            9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN   76 (656)
T ss_dssp             EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred             heEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCcHHH
Confidence            4668888875    5 499999999999999999999999999999999877 689999999999764

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=99.19  E-value=1.6e-11  Score=92.65  Aligned_cols=53  Identities=23%  Similarity=0.246  Sum_probs=48.4

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCC
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRG   54 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~   54 (70)
                      ++.+.|+|.++|| ..+|.|+++++|+++++.||+++||.|.+||||.|.+.+.
T Consensus       261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~~~~dk  314 (655)
T 3pvl_A          261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFDK  314 (655)
T ss_dssp             TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEEEETTE
T ss_pred             CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEEecCCc
Confidence            4678999999999 6789999999999999999999999999999999976543

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A

Probab=99.18  E-value=3e-11  Score=88.57  Aligned_cols=64  Identities=14%  Similarity=0.121  Sum_probs=55.6

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee-eeeeeEEEecCCCCeecccCCCeec
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE-VWFFGLQYADSRGDLTWIKLYKKVR   66 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E-~dYFGL~y~d~~~~~~WLd~~k~i~   66 (70)
                      ++.+.|+|.++|| ..++.++++++|++|++.||+++||.| .+||||.+.+ .+..+||++++.|.
T Consensus       214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~-~~~~~~L~~~~~i~  279 (555)
T 3au4_A          214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYN-GHVDKAIESRTVVA  279 (555)
T ss_dssp             TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEES-SSCEEECCTTSBHH
T ss_pred             CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEe-CCeeEecCCCCchh
Confidence            5678999999999 678999999999999999999999998 8999998764 55678888876653

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A

Probab=98.47  E-value=5.1e-08  Score=67.32  Aligned_cols=60  Identities=18%  Similarity=0.329  Sum_probs=47.9

Q ss_pred             eEEEEEEecCC-eEEEEEcc--cCchhhhHHHHhcccCce--eeeeeeEEEecCCCC-------------eecccCCCee
Q psy11813          4 LMNVRVTTMDA-ELEFAIQH--TTTGKQLFDQTVKTIGLR--EVWFFGLQYADSRGD-------------LTWIKLYKKV   65 (70)
Q Consensus         4 ~~~~~V~lLD~-~~~~~v~~--~~~G~~L~d~Vc~~L~L~--E~dYFGL~y~d~~~~-------------~~WLd~~k~i   65 (70)
                      .+.|+|.++|| ...+.++.  +++|+++    |++++|.  +.+||||.+.++..+             ..|.++.+++
T Consensus         5 ~~~i~V~l~dg~~~~~~i~~~~~tt~~el----~e~lgL~~~~~~~FaL~~~~~~~e~~L~~~~~~~d~~~~W~~~l~~~   80 (322)
T 4dxa_B            5 FEKVRIYRMDGSYRSVELKHGNNTTVQQI----MEGMRLSQETQQYFTIWICSENLSLQLKPYHKPLQHVRDWPEILAEL   80 (322)
T ss_dssp             CCEEEEECTTSCEEEEECTTGGGCCHHHH----HTTSSCCTTGGGGEEEEEECSSCEEECCTTCCHHHHHHTHHHHHHHH
T ss_pred             ceEEEEEEECCcEEEEEEcCCCCCcHHHH----HHHhCcCccccCeeEEEEECCccccccCccccHHHHHHHHHHHHHHh
Confidence            36899999999 67799998  9999999    5667875  789999999886543             4788876665


Q ss_pred             cC
Q psy11813         66 RC   67 (70)
Q Consensus        66 ~~   67 (70)
                      ..
T Consensus        81 ~~   82 (322)
T 4dxa_B           81 TN   82 (322)
T ss_dssp             CS
T ss_pred             cC
Confidence            43

>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}

Probab=98.35  E-value=7.6e-07  Score=63.72  Aligned_cols=61  Identities=15%  Similarity=0.253  Sum_probs=51.9

Q ss_pred             EEEEEe------cCCe-EEEEEcccCchhhhHHHHh--cccC--ceeeeeeeEEEec-CCCCeecccCCCeec
Q psy11813          6 NVRVTT------MDAE-LEFAIQHTTTGKQLFDQTV--KTIG--LREVWFFGLQYAD-SRGDLTWIKLYKKVR   66 (70)
Q Consensus         6 ~~~V~l------LD~~-~~~~v~~~~~G~~L~d~Vc--~~L~--L~E~dYFGL~y~d-~~~~~~WLd~~k~i~   66 (70)
                      ..+|.+      +||+ ..+.++..++.+++++.||  ..+|  +.+.+||||++.. ..+..+||++++++.
T Consensus        23 ~~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~   95 (392)
T 4eku_A           23 ILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVG   95 (392)
T ss_dssp             EEEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHH
T ss_pred             eEEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHH
Confidence            467788      8995 4699999999999999999  6776  4799999999964 467889999999985

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.15  E-value=0.0015  Score=40.69  Aligned_cols=49  Identities=10%  Similarity=0.150  Sum_probs=38.7

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEec
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYAD   51 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d   51 (70)
                      +.-..+|.++|+ ..++.|+...+-..+-..||+.+||.-.+=|+|....
T Consensus        10 k~r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~   59 (128)
T 2kc2_A           10 HMRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVREL   59 (128)
T ss_dssp             EEEEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEEC
T ss_pred             CCccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccc
Confidence            344789999999 5679999888877777889999999744336888643

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.28  E-value=0.02  Score=33.56  Aligned_cols=56  Identities=11%  Similarity=0.160  Sum_probs=49.0

Q ss_pred             CceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCee
Q psy11813          2 NGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLT   57 (70)
Q Consensus         2 ~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~   57 (70)
                      +..+.+++.+-++.+-+.+++..+=++|.++|.+.+.+.+.+=|.+.|.|.+|.+.
T Consensus         4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~i   59 (89)
T 1vd2_A            4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPC   59 (89)
T ss_dssp             SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCE
T ss_pred             CCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcc
Confidence            34588999999888889999999999999999999999988999999999876543

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=95.46  E-value=0.0092  Score=35.18  Aligned_cols=46  Identities=13%  Similarity=0.180  Sum_probs=38.4

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEec
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYAD   51 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d   51 (70)
                      |.+.|..-++ ...+.+.+.++=.++++++|+++++ +.+-++|.|.+
T Consensus        10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl-~~~~~~Lkh~~   56 (90)
T 2al3_A           10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDF-NPSEYDLKFQR   56 (90)
T ss_dssp             CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTC-CGGGCEEEETT
T ss_pred             cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCC-ChhhCeEEeCC
Confidence            5667777777 7889999999999999999999999 45666999853

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=93.31  E-value=0.19  Score=27.13  Aligned_cols=40  Identities=18%  Similarity=0.226  Sum_probs=34.9

Q ss_pred             CCceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          1 MNGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         1 ~~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      |...|.+.|..++| ++.+.+++.++-.+|=.++.+..++.
T Consensus         1 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip   41 (79)
T 3phx_B            1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ   41 (79)
T ss_dssp             --CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC
T ss_pred             CCCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC
Confidence            56789999999999 78899999999999999999998875

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=93.29  E-value=0.25  Score=27.56  Aligned_cols=40  Identities=18%  Similarity=0.226  Sum_probs=35.4

Q ss_pred             CCceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          1 MNGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         1 ~~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      |...|.+.|..++| .+.+.+++.++-.+|-.++.+..++.
T Consensus         1 m~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip   41 (88)
T 2hj8_A            1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ   41 (88)
T ss_dssp             -CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC
T ss_pred             CCccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence            66789999999998 78899999999999999999998864

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=93.18  E-value=0.18  Score=27.40  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=33.7

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE   41 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E   41 (70)
                      |.++|...+| ++.|.|.+.++=+.|++..|++.++.-
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~   39 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM   39 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCT
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence            6889999999 799999999999999999999999753

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=92.89  E-value=0.2  Score=28.93  Aligned_cols=40  Identities=25%  Similarity=0.378  Sum_probs=35.3

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE   41 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E   41 (70)
                      +..|+++|...++ ++.|.|.+.++=+.|++..|++.++.-
T Consensus         5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~   45 (94)
T 2io1_B            5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM   45 (94)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred             CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc
Confidence            3468999999999 799999999999999999999999853

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=92.67  E-value=0.25  Score=28.42  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=35.2

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE   41 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E   41 (70)
                      ..+.++|...++ ++.|.|.+.++=+.|++..|+..++.-
T Consensus         4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~   43 (91)
T 2io0_B            4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM   43 (91)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence            468899999999 799999999999999999999999854

>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=92.63  E-value=0.34  Score=28.75  Aligned_cols=46  Identities=15%  Similarity=0.097  Sum_probs=40.2

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEE
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQ   48 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~   48 (70)
                      +...|+|...|| ...+.|++..+.+++.+..++..++.....+.|-
T Consensus         8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLv   54 (100)
T 1wgr_A            8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLV   54 (100)
T ss_dssp             SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEE
T ss_pred             CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEE
Confidence            457899999999 6779999999999999999999998877766665

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=92.44  E-value=0.052  Score=30.58  Aligned_cols=48  Identities=17%  Similarity=0.249  Sum_probs=39.3

Q ss_pred             CCceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          1 MNGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         1 ~~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      |.+.|.+||+.-+|+..++++++++-.+|++++.+.+++.. +.|.+.+
T Consensus         1 ~~~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~-~~~~l~~   48 (80)
T 2pjh_A            1 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQN-NGFSVYI   48 (80)
T ss_dssp             -CCCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCT-TTCCCCC
T ss_pred             CCCcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCC-CcceEEe
Confidence            66778999999999888889999999999999999999642 4455544

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=91.80  E-value=0.37  Score=26.00  Aligned_cols=38  Identities=13%  Similarity=0.233  Sum_probs=33.9

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ..|.+.|..+++ ++.+.+++.++-.+|-+++++..++.
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~   40 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   40 (85)
T ss_dssp             -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred             CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence            468999999998 78899999999999999999999874

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=91.47  E-value=0.42  Score=27.36  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=35.1

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE   41 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E   41 (70)
                      ..+.++|...++ .+.|.|.+.++=+.|++..|++.++.-
T Consensus        16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~   55 (93)
T 2d07_B           16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM   55 (93)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCG
T ss_pred             CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCc
Confidence            468899999998 789999999999999999999999853

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=91.32  E-value=0.46  Score=27.95  Aligned_cols=38  Identities=24%  Similarity=0.382  Sum_probs=34.6

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ..|.++|...++ .+.|.|.+.++=+.|++..|++.++.
T Consensus        23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~   61 (104)
T 1wz0_A           23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS   61 (104)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred             CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCC
Confidence            368899999999 79999999999999999999999985

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=91.10  E-value=0.64  Score=25.34  Aligned_cols=39  Identities=23%  Similarity=0.179  Sum_probs=34.6

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      +..|.+.|..+++ ++++++++.++-.+|-+++++..++.
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~   44 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP   44 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC
Confidence            3568999999998 78899999999999999999998864

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=91.07  E-value=0.47  Score=25.49  Aligned_cols=37  Identities=24%  Similarity=0.403  Sum_probs=33.8

Q ss_pred             eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      .|.+.|..++| ++.+.|.+.++=.+|.+++++..++.
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~   40 (79)
T 2uyz_B            3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP   40 (79)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCC
Confidence            58899999999 78899999999999999999999875

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=90.92  E-value=0.61  Score=25.36  Aligned_cols=38  Identities=24%  Similarity=0.414  Sum_probs=34.5

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ..|.+.|..+++ .+.+.+++.++-.+|-.++++..++.
T Consensus        11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip   49 (88)
T 3dbh_I           11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP   49 (88)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred             CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence            468999999998 78899999999999999999999875

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=90.86  E-value=0.3  Score=26.44  Aligned_cols=39  Identities=13%  Similarity=0.182  Sum_probs=33.5

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE   41 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E   41 (70)
                      ..|.+.|..+++ ++.+++++.++-.+|-+++++..++..
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~   41 (85)
T 3n3k_B            2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPP   41 (85)
T ss_dssp             --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH
Confidence            468899999998 788999999999999999999998743

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=90.83  E-value=0.39  Score=25.22  Aligned_cols=44  Identities=23%  Similarity=0.328  Sum_probs=35.6

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      |.+.|..++| ++.+.+++.++-.+|-+++++..++.. +..-|.|
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~-~~q~L~~   45 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP-QQQRLIY   45 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEE
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcCh-HHEEEEE
Confidence            5788999998 788999999999999999999998752 3334444

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=90.71  E-value=0.65  Score=25.58  Aligned_cols=39  Identities=15%  Similarity=0.273  Sum_probs=34.9

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      +..|.+.|..+++ ++.+.|++.++-.+|=.++.+..++.
T Consensus         3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip   42 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP   42 (90)
T ss_dssp             CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred             CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence            4679999999999 78899999999999999999998874

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=90.66  E-value=0.51  Score=28.12  Aligned_cols=39  Identities=33%  Similarity=0.484  Sum_probs=35.1

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE   41 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E   41 (70)
                      ..|.++|...++ .+.|.|.+.++=+.|++..|+..++.-
T Consensus        25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~   64 (110)
T 2k8h_A           25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISR   64 (110)
T ss_dssp             CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCS
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence            358999999999 799999999999999999999999853

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=90.29  E-value=0.96  Score=25.95  Aligned_cols=49  Identities=18%  Similarity=0.120  Sum_probs=40.7

Q ss_pred             CceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecC
Q psy11813          2 NGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADS   52 (70)
Q Consensus         2 ~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~   52 (70)
                      +..+.++|+.= .++-+.+++...=++|.++|++.|.+. .+.-=|.|.+.
T Consensus         3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~-~~~~~LsYk~~   51 (83)
T 1oey_A            3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELR-LEHTKLSYRPR   51 (83)
T ss_dssp             SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCC-GGGCCEEECCT
T ss_pred             CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCC-cceeEEEeeCC
Confidence            34578888888 588899999999999999999999996 34457889875

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=90.28  E-value=0.52  Score=24.72  Aligned_cols=44  Identities=14%  Similarity=0.178  Sum_probs=35.7

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      |.+.|..+++ .+.+.+++.++-.+|-+++++..++.. +..-|.|
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~-~~q~L~~   45 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIF   45 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH-HHeEEEE
Confidence            5788999998 788999999999999999999998752 3344555

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=89.98  E-value=0.71  Score=25.64  Aligned_cols=39  Identities=15%  Similarity=0.289  Sum_probs=34.8

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      +..|.+.|..++| ++.+.+++.++-.+|=.++++..++.
T Consensus        15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip   54 (91)
T 3v6c_B           15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP   54 (91)
T ss_dssp             CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC
Confidence            3568999999998 78899999999999999999999874

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=89.89  E-value=0.67  Score=26.32  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=34.4

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ..|.+.|..++| ++.+.|.+.++=..|.+++++..++.
T Consensus        20 ~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip   58 (97)
T 1wyw_B           20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP   58 (97)
T ss_dssp             CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred             CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence            458999999999 78899999999999999999999975

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.86  E-value=1  Score=24.02  Aligned_cols=38  Identities=11%  Similarity=0.161  Sum_probs=33.8

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ..|.+.|..++| .+.+.+++.++-.+|-+++.+..++.
T Consensus         6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~   44 (81)
T 2dzi_A            6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP   44 (81)
T ss_dssp             SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC
T ss_pred             CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence            568899999988 78899999999999999999998874

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=89.75  E-value=0.68  Score=27.42  Aligned_cols=53  Identities=13%  Similarity=0.164  Sum_probs=42.0

Q ss_pred             eEEEEEEecC-------C-eEEEEEcccCchhhhHHHHhcccCceee----eeeeEEEecCCCCe
Q psy11813          4 LMNVRVTTMD-------A-ELEFAIQHTTTGKQLFDQTVKTIGLREV----WFFGLQYADSRGDL   56 (70)
Q Consensus         4 ~~~~~V~lLD-------~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~----dYFGL~y~d~~~~~   56 (70)
                      .+.++|+.-+       + ...+.|++...=++|.+++.+.+++...    .-+.|+|.|.+|..
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~   69 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDF   69 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCE
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCE
Confidence            4678888763       2 4678899999999999999999998633    33899999987644

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=89.63  E-value=0.81  Score=25.27  Aligned_cols=39  Identities=21%  Similarity=0.300  Sum_probs=34.7

Q ss_pred             ceEEEEEEecCC--eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813          3 GLMNVRVTTMDA--ELEFAIQHTTTGKQLFDQTVKTIGLRE   41 (70)
Q Consensus         3 ~~~~~~V~lLD~--~~~~~v~~~~~G~~L~d~Vc~~L~L~E   41 (70)
                      ..|.++|...++  .+.|.|.+.++=+.|++..|++.++.-
T Consensus         6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~   46 (79)
T 3a4r_A            6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSG   46 (79)
T ss_dssp             CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTT
T ss_pred             CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence            458899999998  488999999999999999999999853

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=89.47  E-value=0.7  Score=27.39  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=33.7

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ..|.++|.. ++ ++.|.|.+.++=+-|++..|++.++.
T Consensus        30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~   67 (106)
T 2eke_C           30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE   67 (106)
T ss_dssp             SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred             CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC
Confidence            458999999 98 78999999999999999999999975

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=88.35  E-value=0.87  Score=27.51  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=34.2

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ..+.++|...|+ ++.|.|.+.++=+-|++..|++.++.
T Consensus        39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~   77 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP   77 (115)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred             CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC
Confidence            358899999998 78999999999999999999999974

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=88.35  E-value=0.86  Score=25.63  Aligned_cols=36  Identities=14%  Similarity=0.260  Sum_probs=32.4

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      |.+.|..++| .+.+.+++.++-.+|-.++.+..++.
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~   37 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   37 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence            5788999998 78899999999999999999999874

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=88.34  E-value=0.28  Score=34.80  Aligned_cols=59  Identities=14%  Similarity=0.151  Sum_probs=41.8

Q ss_pred             eEEEEEEecCCe--EE---E---------EEcccCchhhhHHHHhcccCcee-eeeeeEEEecCCCCeecccCCCee
Q psy11813          4 LMNVRVTTMDAE--LE---F---------AIQHTTTGKQLFDQTVKTIGLRE-VWFFGLQYADSRGDLTWIKLYKKV   65 (70)
Q Consensus         4 ~~~~~V~lLD~~--~~---~---------~v~~~~~G~~L~d~Vc~~L~L~E-~dYFGL~y~d~~~~~~WLd~~k~i   65 (70)
                      .+.|+|..||++  ..   |         .++.+..=...+..||+++++.. .+.+-|||.+..   .+|+++-.+
T Consensus        15 ~~~~~vq~l~d~dpf~~~~~~ep~r~~l~~fd~~~pL~~~i~~v~~~~~~p~~~e~yaLQ~~~~~---~Yl~~~~~l   88 (339)
T 3dad_A           15 VVTVRVQYLEDTDPFASANFPEPRRAPTCSLDGALPLGAQIPAVHRLLGAPLKLEDSALQVSPSG---YYLDTELSL   88 (339)
T ss_dssp             EEEEEEEECCCSSTTSCCCCCSSSSCCEEEEETTSCGGGTHHHHHHHHTCSSCSSSEEEEETTTC---CBCCTTSCT
T ss_pred             eeEEEEEeecCCCccccCCCCCCCCCCceeccCcCCHHHHHHHHHHhccCCCcccceeeeecCCC---Ceeccccch
Confidence            589999999972  21   2         22334444566789999999998 789999996543   588866443

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=88.22  E-value=1.3  Score=24.15  Aligned_cols=38  Identities=16%  Similarity=0.288  Sum_probs=34.1

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ..|.+.|..++| .+.+.+++.++-.+|=.++.+..++.
T Consensus        16 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip   54 (88)
T 4eew_A           16 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP   54 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred             CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence            568999999998 78899999999999999999998874

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=87.93  E-value=0.86  Score=25.32  Aligned_cols=36  Identities=14%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      |.+.|..+++ ++.+.+++.++-.+|-.++++..++.
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip   38 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   38 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC
Confidence            6789999998 78899999999999999999999874

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=87.61  E-value=1  Score=30.89  Aligned_cols=46  Identities=15%  Similarity=0.150  Sum_probs=38.8

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEE
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQ   48 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~   48 (70)
                      +.+.|+|.+.|+ ...+.|++..+..+|.+..+...++...+...|-
T Consensus        30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~   76 (281)
T 4gmv_A           30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLV   76 (281)
T ss_dssp             CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEE
T ss_pred             ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEE
Confidence            567899999999 7889999999999999999988887666655543

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=87.47  E-value=1.3  Score=23.50  Aligned_cols=45  Identities=20%  Similarity=0.197  Sum_probs=36.2

Q ss_pred             eEEEEEEecCC-eE-EEE-EcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          4 LMNVRVTTMDA-EL-EFA-IQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         4 ~~~~~V~lLD~-~~-~~~-v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      .|.+.|..++| ++ .++ +++.++-.+|-.++.+..++. .+..-|.|
T Consensus         2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip-~~~qrL~~   49 (78)
T 2faz_A            2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE-PGLQRLFY   49 (78)
T ss_dssp             CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred             cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC-hhhEEEEE
Confidence            58899999998 65 898 999999999999999999874 23334444

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=87.24  E-value=0.94  Score=25.61  Aligned_cols=39  Identities=13%  Similarity=0.224  Sum_probs=33.8

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      +..|.+.|..++| .+.+.+++.++-.+|=.++++..++.
T Consensus        20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip   59 (98)
T 4hcn_B           20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP   59 (98)
T ss_dssp             --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence            3568999999998 78899999999999999999999874

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=86.56  E-value=1.8  Score=24.85  Aligned_cols=38  Identities=13%  Similarity=0.148  Sum_probs=34.0

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ..|.+.|..++| .+.+.+.+.++-.+|-.++++..++.
T Consensus        22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip   60 (106)
T 1ttn_A           22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE   60 (106)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC
Confidence            458999999999 78899999999999999999998874

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=85.61  E-value=1.4  Score=24.40  Aligned_cols=36  Identities=22%  Similarity=0.396  Sum_probs=32.1

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      |.+.|..++| ++.+.+++.++-.+|=.++.+..++.
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip   37 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP   37 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence            5788999998 78899999999999999999998874

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=85.59  E-value=1.4  Score=24.35  Aligned_cols=37  Identities=11%  Similarity=0.176  Sum_probs=33.0

Q ss_pred             eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      .|.+.|..++| ++.+++++.++-.+|-+++++..++.
T Consensus         9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip   46 (88)
T 1sif_A            9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIP   46 (88)
T ss_dssp             -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC
T ss_pred             ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC
Confidence            47889999999 78899999999999999999999874

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=85.08  E-value=2.1  Score=24.77  Aligned_cols=38  Identities=13%  Similarity=0.198  Sum_probs=34.0

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ..|.+.|..+++ .+.+.+++.++-.+|-.++++..++.
T Consensus        34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip   72 (111)
T 2ojr_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   72 (111)
T ss_dssp             SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence            468999999998 78899999999999999999999874

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=85.01  E-value=2.7  Score=22.54  Aligned_cols=35  Identities=11%  Similarity=0.160  Sum_probs=31.0

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcc
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKT   36 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~   36 (70)
                      +..|.+.|..++| .+++++++.++-.+|-+++.+.
T Consensus         3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~   38 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAE   38 (85)
T ss_dssp             -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHH
T ss_pred             CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhh
Confidence            3568899999998 7889999999999999999997

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=83.51  E-value=2.3  Score=24.63  Aligned_cols=38  Identities=13%  Similarity=0.198  Sum_probs=34.2

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ..|.+.|..+++ ++.+.+.+.++-.+|=.++++..++.
T Consensus        34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip   72 (111)
T 3vdz_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP   72 (111)
T ss_dssp             GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred             ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence            358999999998 78899999999999999999999874

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=82.53  E-value=3.6  Score=22.62  Aligned_cols=38  Identities=11%  Similarity=0.142  Sum_probs=34.2

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ..|.+.|..+.| ++++++++.++-.+|=.++.+..++.
T Consensus         9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip   47 (84)
T 2kk8_A            9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP   47 (84)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC
T ss_pred             CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC
Confidence            458999999999 78899999999999999999999864

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=81.95  E-value=3.6  Score=23.38  Aligned_cols=39  Identities=23%  Similarity=0.284  Sum_probs=34.4

Q ss_pred             CceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCce
Q psy11813          2 NGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         2 ~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ...|.+.|..+.+..++++++.++-.+|-+++.+..++.
T Consensus        20 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip   58 (100)
T 1yqb_A           20 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAH   58 (100)
T ss_dssp             TTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred             CCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcC
Confidence            356899999999877899999999999999999999874

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=80.85  E-value=4.3  Score=21.17  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=34.4

Q ss_pred             eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      .|.+.|.. +| .+++.+++.++-.+|-.++.+..++. .+..-|.|
T Consensus         4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~-~~~qrL~~   48 (77)
T 2bwf_A            4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP-VANQRLIY   48 (77)
T ss_dssp             EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred             EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC-HHHEEEEE
Confidence            37788888 77 78899999999999999999998874 23334444

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=80.48  E-value=1.4  Score=24.29  Aligned_cols=44  Identities=14%  Similarity=0.063  Sum_probs=35.5

Q ss_pred             EEEEEEecCCeEEEE-EcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          5 MNVRVTTMDAELEFA-IQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         5 ~~~~V~lLD~~~~~~-v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      |.++|..++|...+. +++.++-.+|-..+.+..++. .+.+.|.|
T Consensus         1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~-~~~qrL~~   45 (86)
T 2kzr_A            1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIA-PGSQRILV   45 (86)
T ss_dssp             CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCC-TTTCCCEE
T ss_pred             CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCC-ccceEEEe
Confidence            568999999955577 899999999999999998864 34556666

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=80.46  E-value=4.3  Score=22.47  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=32.7

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      ..|.+.|..+ + .+++.+++.++-.+|-+++.+..++.
T Consensus        16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip   53 (96)
T 1wx8_A           16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCN   53 (96)
T ss_dssp             CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSC
T ss_pred             CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence            5688999988 6 78899999999999999999998864

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=80.43  E-value=2.3  Score=25.01  Aligned_cols=40  Identities=23%  Similarity=0.293  Sum_probs=34.1

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE   41 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E   41 (70)
                      +..|.+.|..|++ +++++|++.++=.+|=.+|-+..++..
T Consensus         5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~   45 (105)
T 1v2y_A            5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQ   45 (105)
T ss_dssp             CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence            3568999999999 789999999999999888888877643

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=80.42  E-value=2.9  Score=24.40  Aligned_cols=39  Identities=10%  Similarity=0.240  Sum_probs=34.7

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      +..+.+.|..++| ++.+++++.++-.+|-.++.+..++.
T Consensus         7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip   46 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP   46 (114)
T ss_dssp             CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred             CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence            4568899999999 78899999999999999999998874

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=80.35  E-value=4.1  Score=23.43  Aligned_cols=37  Identities=16%  Similarity=0.081  Sum_probs=32.6

Q ss_pred             eEEEEEEecCCeEEEEEc-ccCchhhhHHHHhcccCce
Q psy11813          4 LMNVRVTTMDAELEFAIQ-HTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         4 ~~~~~V~lLD~~~~~~v~-~~~~G~~L~d~Vc~~L~L~   40 (70)
                      .|.++|..++|...++++ +.++=.+|-+++.+..++.
T Consensus         7 ~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip   44 (107)
T 1wf9_A            7 GTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIP   44 (107)
T ss_dssp             CEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCC
T ss_pred             eEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcC
Confidence            378999999996688999 9999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	70
d1ef1a3	84	d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [Ta	8e-23
d1h4ra3	84	d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [	5e-21
d1gg3a3	81	d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R	1e-17

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (199), Expect = 8e-23
 Identities = 49/62 (79%), Positives = 54/62 (87%)

Query: 5  MNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKK 64
          ++VRVTTMDAELEFAIQ  TTGKQLFDQ VKTIGLREVWFFGLQY D++G  TW+KL KK
Sbjct: 2  ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK 61

Query: 65 VR 66
          V 
Sbjct: 62 VT 63

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (187), Expect = 5e-21
 Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 4  LMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
             VR+ TMDAE+EF  +    GK LFD   +T+GLRE WFFGLQY   +  + W+K+ K
Sbjct: 2  TFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTI-KDTVAWLKMDK 60

Query: 64 KVR 66
          KV 
Sbjct: 61 KVL 63

>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (165), Expect = 1e-17
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 5  MNVRVTTMD-AELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYK 63
          M+ +V+ +D    E  ++    G+ L  +  + + L E  +FGL   D+    TW+   K
Sbjct: 1  MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAK 60

Query: 64 KVR 66
          +++
Sbjct: 61 EIK 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1h4ra3	84	Merlin {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1gg3a3	81	Erythroid membrane protein 4.1R {Human (Homo sapie	99.95
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	96.91
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	95.86
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	95.78
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.72
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	94.46
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	92.5
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	91.95
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	91.84
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	91.57
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	90.91
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	90.43
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	90.42
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	89.69
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	88.2
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	88.11
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	87.99
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	87.91
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	87.25
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	86.28
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	85.27
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	84.36
d1wgya_	104	Rap guanine nucleotide exchange factor 5, RapGEF5	84.19
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	83.12
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	83.05
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	82.43
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	80.85

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.2e-29  Score=146.83  Aligned_cols=64  Identities=77%  Similarity=1.152  Sum_probs=61.9

Q ss_pred             eEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeecC
Q psy11813          4 LMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRC   67 (70)
Q Consensus         4 ~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~~   67 (70)
                      +++|+|.+||++++|.++++|+|++||++||++|||.|+|||||+|.|+++..+|||++|+|..
T Consensus         1 t~~v~V~~LD~~~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~l~k   64 (84)
T d1ef1a3           1 TISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTA   64 (84)
T ss_dssp             CEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGG
T ss_pred             CEEEEEEEcCCEEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCchhh
Confidence            5899999999999999999999999999999999999999999999999999999999999975

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.5e-29  Score=146.28  Aligned_cols=64  Identities=48%  Similarity=0.846  Sum_probs=60.8

Q ss_pred             ceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeecC
Q psy11813          3 GLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVRC   67 (70)
Q Consensus         3 ~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~~   67 (70)
                      |++.|+|.+||++++|.++++|+|++||++||+||+|.|+|||||+|.++ ++.+|||++|+|+.
T Consensus         1 k~~~v~V~lLD~~le~~v~~~a~G~~L~d~Vc~~L~L~E~~YFGL~y~~~-~~~~WLd~~k~l~k   64 (84)
T d1h4ra3           1 KTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIK-DTVAWLKMDKKVLD   64 (84)
T ss_dssp             CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEET-TEEEECCTTSBGGG
T ss_pred             CeEEEEEEEcCCcEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEecC-CceEEccCCCchhh
Confidence            67899999999999999999999999999999999999999999999985 78899999999974

>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.4e-29  Score=146.62  Aligned_cols=62  Identities=24%  Similarity=0.493  Sum_probs=60.0

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCCCeec
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLYKKVR   66 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~k~i~   66 (70)
                      |+|+|.+||| ++++.++++|+|++||++||++|||.|+|||||+|.|++++..|||++|+|+
T Consensus         1 ~~C~V~lLD~~~~~~~v~~~~~G~~l~~~Vc~~l~l~E~~YFGL~y~d~~~~~~WLd~~K~i~   63 (81)
T d1gg3a3           1 MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIK   63 (81)
T ss_dssp             CEEEEECTTSCEEEEECCTTCCHHHHHHHHHHHHTTCSCCSSSCEEECCSSSCCBCCTTSCHH
T ss_pred             CEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCcccccceEEEECCCCceEecccccchh
Confidence            6899999999 7899999999999999999999999999999999999999999999999985

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0023  Score=36.30  Aligned_cols=60  Identities=12%  Similarity=0.015  Sum_probs=49.3

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCC-CCeecccC
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSR-GDLTWIKL   61 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~-~~~~WLd~   61 (70)
                      ++...++|.+.|| ...+.|+..++.+++...+++.+++.+...|+|-=...+ +..+.|+.
T Consensus         7 ~~~~vvkv~~~dg~~k~l~V~~~tTa~eV~~~l~~K~~~~~~~~f~L~E~~~~~~leR~L~d   68 (100)
T d1wgra_           7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLED   68 (100)
T ss_dssp             CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECS
T ss_pred             CCceEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHhCCCCCCCeEEEEecCCCcceeecCc
Confidence            5678899999999 567999999999999999999999988889999865554 33455543

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.86  E-value=0.0033  Score=34.71  Aligned_cols=44  Identities=14%  Similarity=0.201  Sum_probs=36.9

Q ss_pred             EEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEec
Q psy11813          7 VRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYAD   51 (70)
Q Consensus         7 ~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d   51 (70)
                      +.|..-++ ...+.+.|.++=.++++.+|+++++ +.+-++|.|.+
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~-~~~~~~Lkh~~   47 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDF-NPSEYDLKFQR   47 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTC-CGGGCEEEETT
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCC-ChhHceeeeCC
Confidence            45666667 6889999999999999999999998 66778999953

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.025  Score=31.58  Aligned_cols=56  Identities=18%  Similarity=0.218  Sum_probs=44.7

Q ss_pred             CCceEEEEEEecCCeEEEEEc--ccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecc
Q psy11813          1 MNGLMNVRVTTMDAELEFAIQ--HTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWI   59 (70)
Q Consensus         1 ~~~~~~~~V~lLD~~~~~~v~--~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WL   59 (70)
                      |.-.++++|+.=++++.|.++  .+++=.+|...|-..++|.+   |+|.|.|.++.+.=|
T Consensus         1 mep~vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~~---~~lkY~Ddd~e~v~l   58 (85)
T d2bkfa1           1 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT---IQIKYLDEENEEVSI   58 (85)
T ss_dssp             CCCCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS---EEEEEECTTSCEEEE
T ss_pred             CCccEEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCccc---ceEEEEcCCCCEEEE
Confidence            566789999986667888875  45677899999999999853   999999988775533

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.014  Score=32.16  Aligned_cols=51  Identities=20%  Similarity=0.127  Sum_probs=43.6

Q ss_pred             ceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCe
Q psy11813          3 GLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDL   56 (70)
Q Consensus         3 ~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~   56 (70)
                      +.+.++|+.=++.+.+.+++..+=.+|.++|.+.+++.   -|-|.|.|.++.+
T Consensus        11 ~~ikVKv~~~~D~~~~~l~~~it~~dL~~kI~~rf~~~---~~~lkY~Dedgd~   61 (85)
T d1ip9a_          11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD---NFKLQTKLFDGSG   61 (85)
T ss_dssp             CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS---CEEEEECCSSSCC
T ss_pred             CCEEEEEEECCcEEEEEeCCCCCHHHHHHHHHHHhCCC---ceEEEEEcCCCCE
Confidence            45788888877788999999999999999999999864   4899999887754

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.034  Score=29.54  Aligned_cols=38  Identities=24%  Similarity=0.375  Sum_probs=34.6

Q ss_pred             eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813          4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE   41 (70)
Q Consensus         4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E   41 (70)
                      .+.++|...|| +++|.|.+.++=+.|+++.|++.++..
T Consensus         2 ~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~   40 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM   40 (77)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred             EEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCh
Confidence            57899999999 789999999999999999999999743

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.13  Score=26.74  Aligned_cols=44  Identities=18%  Similarity=0.247  Sum_probs=36.6

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      |++.|..++| ++.+.|++.++-.+|=.++.+..|+. .+..-|-|
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip-~~~qrLi~   45 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP-SEKQRLIY   45 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCC-TTTCCCEE
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCC-hHHEEEEE
Confidence            6789999999 78999999999999999999999874 33335555

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.21  Score=26.36  Aligned_cols=41  Identities=12%  Similarity=0.109  Sum_probs=36.0

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceee
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREV   42 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~   42 (70)
                      |.++++.|..++| ++.+.|++.++=.+|=.++.+..++...
T Consensus         1 g~e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~   42 (80)
T d1ttna1           1 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPG   42 (80)
T ss_dssp             CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCST
T ss_pred             CCeEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcc
Confidence            3568899999999 7899999999999999999999987543

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=91.84  E-value=0.16  Score=26.79  Aligned_cols=45  Identities=24%  Similarity=0.353  Sum_probs=35.7

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      ..++++|.- ++ ++.|.|.++++=+.|+++.|+..++... -+=|.|
T Consensus         3 ~~I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~-~~~l~f   48 (79)
T d1euvb_           3 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD-SLRFLY   48 (79)
T ss_dssp             SEEEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGG-GEEEEE
T ss_pred             cEEEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCChH-hEEEEE
Confidence            357888876 55 8899999999999999999999998543 344444

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.15  Score=26.60  Aligned_cols=44  Identities=14%  Similarity=0.168  Sum_probs=36.7

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      |.+.|..++| +++++|++.++-.+|=+++....++. .+..=|.|
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~-~~~qrL~~   45 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLIF   45 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCC-hHHEEeEE
Confidence            5788999999 88999999999999999999999984 33345555

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.28  Score=26.05  Aligned_cols=39  Identities=23%  Similarity=0.284  Sum_probs=35.5

Q ss_pred             CceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCce
Q psy11813          2 NGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         2 ~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      +++|++.|..+++..++.|++.++-.+|-.++.+..++.
T Consensus         5 ~~~i~I~Vkt~~~~~~~~V~~~~tV~~lK~~i~~~~gi~   43 (84)
T d1yqba1           5 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAH   43 (84)
T ss_dssp             TTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred             CCEEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcC
Confidence            568999999998888899999999999999999999874

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.27  Score=27.14  Aligned_cols=47  Identities=19%  Similarity=0.217  Sum_probs=38.7

Q ss_pred             CceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          2 NGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         2 ~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      ++.|.++|..+.+..++.|++.++-.+|-.+|....++.- +..=|.|
T Consensus        30 ~~~i~V~Vk~~~~~~~i~V~~~~tV~~LK~~I~~~~gi~~-~~qrLi~   76 (103)
T d1j8ca_          30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQT-DQLVLIF   76 (103)
T ss_dssp             CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCS-SSEEEEE
T ss_pred             CCeEEEEEECCCccEEEEECCCChHHHHHHHHHHHHCcCH-HHeeeee
Confidence            4579999999988888999999999999999999999743 3334444

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.42  E-value=0.29  Score=25.21  Aligned_cols=45  Identities=27%  Similarity=0.333  Sum_probs=37.8

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEe
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYA   50 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~   50 (70)
                      |.+.|..++| ++.+.|++.++-.+|=.++.+..++. .+.+-|-|.
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~-~~~qrLi~~   46 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIP-PVQQRLIYA   46 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC-GGGEEEEET
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC-hHHEEEEEC
Confidence            5788999999 88999999999999999999999974 355566664

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.69  E-value=0.43  Score=25.41  Aligned_cols=46  Identities=22%  Similarity=0.141  Sum_probs=38.6

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      ..|.+.|..++| ++.+.|++..+-.+|-.++....++. .+..-|.|
T Consensus         6 ~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip-~~~qrLi~   52 (87)
T d1wh3a_           6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP-KKQQQLEF   52 (87)
T ss_dssp             SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC-TTTEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcC-hHHeEEEe
Confidence            458899999999 78899999999999999999999975 34345666

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.20  E-value=0.46  Score=24.89  Aligned_cols=37  Identities=22%  Similarity=0.159  Sum_probs=34.0

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCcee
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLRE   41 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E   41 (70)
                      |.+.|..+.| ++.+.|++.++-.+|-+.+.+..++..
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~   40 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPA   40 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCG
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcCh
Confidence            7789999999 899999999999999999999999864

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.11  E-value=0.29  Score=27.27  Aligned_cols=37  Identities=24%  Similarity=0.290  Sum_probs=33.8

Q ss_pred             eEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          4 LMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         4 ~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      .|.++|..+|| .+.+.|++.++-.+|=.+|.+.+++.
T Consensus         7 ~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip   44 (105)
T d1v2ya_           7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK   44 (105)
T ss_dssp             SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC
Confidence            58999999999 78899999999999999999998874

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.99  E-value=0.65  Score=24.46  Aligned_cols=40  Identities=18%  Similarity=0.206  Sum_probs=35.4

Q ss_pred             CceEEEEEEecCCeEEEEEcccCchhhhHHHHhcccCcee
Q psy11813          2 NGLMNVRVTTMDAELEFAIQHTTTGKQLFDQTVKTIGLRE   41 (70)
Q Consensus         2 ~~~~~~~V~lLD~~~~~~v~~~~~G~~L~d~Vc~~L~L~E   41 (70)
                      .+.|.++|...++..++.|++.++-.+|=..+.+..++.-
T Consensus         8 ~~~i~v~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~~v~~   47 (83)
T d1wx8a1           8 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNA   47 (83)
T ss_dssp             SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCT
T ss_pred             CCeEEEEEEcCCCcEEEEECCCChHHHHHHHHHHHhCCCh
Confidence            3578999999988888999999999999999999998753

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.91  E-value=0.42  Score=24.90  Aligned_cols=35  Identities=17%  Similarity=0.373  Sum_probs=32.6

Q ss_pred             EEEEEecCC-eEEEEEcccCchhhhHHHHhcccCce
Q psy11813          6 NVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         6 ~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      .++|..++| ++.+.|++.++-.++=.++....++.
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip   37 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVH   37 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccC
Confidence            678999999 78999999999999999999999985

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=0.68  Score=23.78  Aligned_cols=47  Identities=17%  Similarity=0.229  Sum_probs=39.2

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEEe
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYA   50 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~   50 (70)
                      ..|++.|..++| ++.+.|++..+-.+|=.++++..|+.. +..=|-|.
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~qrL~~~   49 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD-DLFWLTFE   49 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG-GGEEEEET
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCCh-hHeEEEEC
Confidence            358899999999 788999999999999999999999864 44456664

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.28  E-value=0.73  Score=23.77  Aligned_cols=39  Identities=23%  Similarity=0.330  Sum_probs=33.5

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeee
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVW   43 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~d   43 (70)
                      ++++|.--|+ ++.|.|.+.++=+-|++.-|++.++....
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~   41 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQ   41 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTT
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccc
Confidence            5678887787 78999999999999999999999986543

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.27  E-value=0.99  Score=23.15  Aligned_cols=44  Identities=14%  Similarity=0.003  Sum_probs=36.4

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCceeeeeeeEEE
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQY   49 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y   49 (70)
                      +.+.|.-+.| ++++.|++.++-.+|=.+++...++.. +.+=|-|
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~-~~q~Li~   46 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQP-NKIVLQK   46 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTT-TSEEEES
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccc-cEEEEEE
Confidence            6788999999 789999999999999999999999753 3334444

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.36  E-value=0.74  Score=24.70  Aligned_cols=46  Identities=26%  Similarity=0.219  Sum_probs=35.3

Q ss_pred             EEEEEEecCC-eEEEEEcccCchhhhHHHHhcccCc--eeeeeeeEEEe
Q psy11813          5 MNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKTIGL--REVWFFGLQYA   50 (70)
Q Consensus         5 ~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~L~L--~E~dYFGL~y~   50 (70)
                      |.+.|..++| ++++.|++.++-.+|=.++.+..+.  ...+..-|-|.
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~   49 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA   49 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEEC
Confidence            5788999999 7899999999999998999887653  33344455553

>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Rap guanine nucleotide exchange factor 5, RapGEF5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.19  E-value=1.1  Score=25.37  Aligned_cols=60  Identities=8%  Similarity=0.069  Sum_probs=45.5

Q ss_pred             CceEEEEEEecCCe-EEEEEcccCchhhhHHHHhcccCceeeeeeeEEEecCCCCeecccCC
Q psy11813          2 NGLMNVRVTTMDAE-LEFAIQHTTTGKQLFDQTVKTIGLREVWFFGLQYADSRGDLTWIKLY   62 (70)
Q Consensus         2 ~~~~~~~V~lLD~~-~~~~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~   62 (70)
                      +..+-|+|...|.+ +++.+...++.++++..|+++|+..+-+. =|.=+...|.+.=|.++
T Consensus         7 ~dei~~~VY~~Dhsy~tlr~~v~~sa~eI~~~vaeKl~~~~e~L-~LV~V~SsGEr~~lkp~   67 (104)
T d1wgya_           7 GEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDL-ALVAITFSGEKHELQPN   67 (104)
T ss_dssp             SSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGE-EEEEECSSCCCCBCCTT
T ss_pred             CCeEEEEEEecCCcEEEEEeeccCcHHHHHHHHHHHhCCCCCce-EEEEEccCCcEEeeCcc
Confidence            34578999999995 56999999999999999999999876552 23335566766655544

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.12  E-value=1.9  Score=22.26  Aligned_cols=45  Identities=18%  Similarity=0.189  Sum_probs=37.1

Q ss_pred             EEEEEEecCC--eEEE-EEcccCchhhhHHHHhcccCceeeeeeeEEEe
Q psy11813          5 MNVRVTTMDA--ELEF-AIQHTTTGKQLFDQTVKTIGLREVWFFGLQYA   50 (70)
Q Consensus         5 ~~~~V~lLD~--~~~~-~v~~~~~G~~L~d~Vc~~L~L~E~dYFGL~y~   50 (70)
                      |.+.|..++|  +..+ .|++.++-.+|=.++....|+ ..++.=|-|.
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gi-p~~~qrLi~~   48 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDV-RPECQRLFYR   48 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCC-CTTTEEEEET
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCC-CchhcEEEEE
Confidence            6789999998  4665 599999999999999999997 4566666664

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.05  E-value=1.3  Score=25.05  Aligned_cols=34  Identities=12%  Similarity=0.306  Sum_probs=29.9

Q ss_pred             ceEEEEEEecCC-eEEEEEcccCchhhhHHHHhcc
Q psy11813          3 GLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVKT   36 (70)
Q Consensus         3 ~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~~   36 (70)
                      ..|.++|.+++| +.+|.|++..+=.+|=.+|+..
T Consensus        15 ~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~   49 (116)
T d1wgha_          15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN   49 (116)
T ss_dssp             SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHS
T ss_pred             CeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhh
Confidence            458999999999 7899999999999999999643

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.43  E-value=1.1  Score=23.75  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=31.3

Q ss_pred             EEEEEecCCeEE-EEEcccCchhhhHHHHhcccCce
Q psy11813          6 NVRVTTMDAELE-FAIQHTTTGKQLFDQTVKTIGLR   40 (70)
Q Consensus         6 ~~~V~lLD~~~~-~~v~~~~~G~~L~d~Vc~~L~L~   40 (70)
                      +|+|.|-|++-+ +.+.+.-+=++++...|++=||.
T Consensus         2 ~iRv~LPngq~T~V~vrpG~tir~~L~k~l~kRgl~   37 (73)
T d1wxma1           2 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLN   37 (73)
T ss_dssp             EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCC
T ss_pred             eEEEEcCCCCeEEEEecCCCCHHHHHHHHHHHcCCC
Confidence            589999999554 99999999999999999999875

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.85  E-value=1.9  Score=23.40  Aligned_cols=34  Identities=18%  Similarity=0.094  Sum_probs=28.6

Q ss_pred             CceEEEEEEecCC-eEEEEEcccCchhhhHHHHhc
Q psy11813          2 NGLMNVRVTTMDA-ELEFAIQHTTTGKQLFDQTVK   35 (70)
Q Consensus         2 ~~~~~~~V~lLD~-~~~~~v~~~~~G~~L~d~Vc~   35 (70)
                      ...|.++|..+++ ++.+.+++.++-.+|=.++.+
T Consensus         5 ~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~~   39 (95)
T d1wiaa_           5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFP   39 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSS
T ss_pred             CCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHhc
Confidence            3469999999999 788999999998888776653