Psyllid ID: psy11882

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
VAKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNVRRS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcHHHHcccccEEccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccEEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHccccccccEEEcccccccccEEEcccccccccccHHHHHHHHHHHHccEEEEEEEccEEEEEEEEEccccEEEEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
VAKVAKVAQAWASKLIGSiargghlqhrpnnkfgeniwmgsgykftdeEAVKNAVKSWYDEIRHFTQVVWKSssklgvgiarkngHILVVanydppgnyqgqyannvrrs
Flexible Loop (DISEMBL)
VAKVAKVAQAWASKLigsiargghlqhrpnnkfgenIWMGSGYKFTDEEAVKNAVKSWYDEIRHFTQVVWKSSSKLGVGIARKNGHILVVAnydppgnyqgqyannvrrs
Low Complexity Region (SEG)
vakvakvaqawaskLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNVRRS
Disordered region (IsUnstruct)
******VAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPG*************
Disordered Region (DISOPRED)
VAKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNVR**
Disordered Region (DISEMBL)
VAKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNVRRS
Disordered Region (DISPRO)
VAKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYA******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VAKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNVRRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
P47032	299	Protein PRY1 OS=Saccharom	yes	N/A	0.836	0.307	0.371	6e-10
P08299	168	Pathogenesis-related prot	N/A	N/A	0.863	0.565	0.380	2e-09
Q41359	167	Pathogenesis-related prot	N/A	N/A	0.809	0.532	0.345	2e-09
Q9CWG1	255	Glioma pathogenesis-relat	yes	N/A	0.845	0.364	0.330	1e-08
P07053	168	Pathogenesis-related prot	N/A	N/A	0.836	0.547	0.358	3e-08
P47033	881	Cell wall protein PRY3 OS	no	N/A	0.827	0.103	0.341	5e-08
Q32LB5	241	GLIPR1-like protein 1 OS=	no	N/A	0.836	0.381	0.330	8e-08
P11670	177	Basic form of pathogenesi	N/A	N/A	0.818	0.508	0.362	9e-08
P48060	266	Glioma pathogenesis-relat	yes	N/A	0.818	0.338	0.346	1e-07
Q40374	173	Pathogenesis-related prot	N/A	N/A	0.827	0.526	0.322	3e-07

>sp|P47032|PRY1_YEAST Protein PRY1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRY1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 61/121 (50%), Gaps = 29/121 (23%)

Query: 4   VAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR 63
           +A  AQ +A     S    G L H     +GEN+ +G      D  A   AV +WY+EI 
Sbjct: 189 LASYAQDYADNYDCS----GTLTHS-GGPYGENLALG-----YDGPA---AVDAWYNEIS 235

Query: 64  --------------HFTQVVWKSSSKLGVGIARKNGH--ILVVANYDPPGNYQGQYANNV 107
                         HFTQVVWKS++++G GI    G     V+ +YDP GNY+G+YA+NV
Sbjct: 236 NYDFSNPGFSSNTGHFTQVVWKSTTQVGCGIKTCGGAWGDYVICSYDPAGNYEGEYADNV 295

Query: 108 R 108
            
Sbjct: 296 E 296

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 18/113 (15%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAV--KSWYD 60
           +VA  AQ +AS+L    A   +L H  + ++GEN+  GSG   T  +AV+  V  K +YD
Sbjct: 58  QVAAYAQNYASQL----AADCNLVHS-HGQYGENLAEGSGDFMTAAKAVEMWVDEKQYYD 112

Query: 61  E----------IRHFTQVVWKSSSKLGVG-IARKNGHILVVANYDPPGNYQGQ 102
                        H+TQVVW++S ++G   +   NG  +V  NYDPPGNY+G+
Sbjct: 113 HDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYVVSCNYDPPGNYRGE 165

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 21/110 (19%)

Query: 10  AWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE-------- 61
           A+A +   S A    L H  + ++GEN+  GSG++ T     +NAV  W  E        
Sbjct: 59  AFARQYAQSRAGDCRLVHSGDPRYGENLAFGSGFELTG----RNAVDMWVAERNDYNPNT 114

Query: 62  --------IRHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQ 102
                     H+TQVVW++S ++G    R  NG   +  NY PPGNY GQ
Sbjct: 115 NTCAPGKVCGHYTQVVWRNSVRIGCARVRCNNGAWFITCNYSPPGNYAGQ 164

Probably involved in the defense reaction of plants against pathogens.

Sambucus nigra (taxid: 4202)

>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 OS=Mus musculus GN=Glipr1 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 19/112 (16%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPN-NKFGENIWMGSGYKFTDEEAVKNAVKSWYDE 61
           K+A++A+AW            H +  PN    GENIW+GS   F+    V +A+ +WY+E
Sbjct: 63  KLAQIAKAWTKSCEFKHNPQLHSRIHPNFTALGENIWLGSLSIFS----VSSAISAWYEE 118

Query: 62  IRHF--------------TQVVWKSSSKLGVGIARKNGHILVVANYDPPGNY 99
           I+H+              TQVVW  S KLG  +         + +Y P GNY
Sbjct: 119 IKHYDFSTRKCRHVCGHYTQVVWADSYKLGCAVQLCPNGANFICDYGPAGNY 170

Mus musculus (taxid: 10090)

>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 14/106 (13%)

Query: 10  AWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAV--KSWYDE------ 61
           A+A   +  +A   +L H  + ++GEN+  GSG   T  +AV+  V  K +YD       
Sbjct: 61  AYAQNYVSQLAADCNLVHS-HGQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCA 119

Query: 62  ----IRHFTQVVWKSSSKLGVG-IARKNGHILVVANYDPPGNYQGQ 102
                 H+TQVVW++S ++G   +   NG  +V  NYDPPGN  GQ
Sbjct: 120 QGQVCGHYTQVVWRNSVRVGCARVKCNNGGYVVSCNYDPPGNVIGQ 165

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|P47033|PRY3_YEAST Cell wall protein PRY3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRY3 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 29/120 (24%)

Query: 4   VAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR 63
           +A  AQ +A +   S    G L H  +  +GEN+ +G    +TD      AV +WY EI 
Sbjct: 52  LATYAQNYADQYDCS----GVLTHS-DGPYGENLALG----YTD----TGAVDAWYGEIS 98

Query: 64  --------------HFTQVVWKSSSKLGVGIAR--KNGHILVVANYDPPGNYQGQYANNV 107
                         HFTQVVWKS++++G G        +  +V +Y+PPGNY G++A  V
Sbjct: 99  KYNYSNPGFSESTGHFTQVVWKSTAEIGCGYKYCGTTWNNYIVCSYNPPGNYLGEFAEEV 158

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q32LB5|GPRL1_BOVIN GLIPR1-like protein 1 OS=Bos taurus GN=GLIPR1L1 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 26/118 (22%)

Query: 4   VAKVAQAWA--SKLIGSIARGGHLQHRPNNKF-GENIWMGSGYKFTDEEAVKNAVKSWYD 60
           +AK A+AWA   K I +       +  P  ++ GEN+W+G         A K A+  WYD
Sbjct: 65  LAKTAEAWAKKCKFIHNSCSSKSFKCHPTFQYAGENLWLGP----LTISAAKFAINMWYD 120

Query: 61  EIR--------------HFTQVVWKSSSKLGVGIAR-----KNGHILVVANYDPPGNY 99
           E +              H+TQVVW  S K+G  +A           L+V NY P GNY
Sbjct: 121 ERKFYDFNTRSCSQVCGHYTQVVWAYSYKVGCAVAVCPNLGSPDSALLVCNYAPAGNY 178

Bos taurus (taxid: 9913)

>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 55/116 (47%), Gaps = 26/116 (22%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
           ++A  AQ +A++ IG    G    H P   +GEN+       F    A   AVK W DE 
Sbjct: 51  RLAAYAQNYANQRIGDC--GMIHSHGP---YGENL----AAAFPQLNAA-GAVKMWVDEK 100

Query: 63  R---------------HFTQVVWKSSSKLGVGIARKN-GHILVVANYDPPGNYQGQ 102
           R               H+TQVVW++S +LG    R N G   +  NYDPPGN+ GQ
Sbjct: 101 RFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCARVRSNNGWFFITCNYDPPGNFIGQ 156

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR1 PE=1 SV=3

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 57/124 (45%), Gaps = 34/124 (27%)

Query: 4   VAKVAQAWASKLIGS---IARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYD 60
           +A++A+AWAS    S     +  H  H      GENIW GS   F    +V +A+ +WYD
Sbjct: 64  LAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIF----SVSSAITNWYD 119

Query: 61  EIR--------------HFTQVVWKSSSKLGVGI----------ARKNG-HILVVANYDP 95
           EI+              H+TQVVW  S K+G  +          A  NG H   + NY P
Sbjct: 120 EIQDYDFKTRICKKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHF--ICNYGP 177

Query: 96  PGNY 99
            GNY
Sbjct: 178 GGNY 181

Homo sapiens (taxid: 9606)

>sp|Q40374|PR1_MEDTR Pathogenesis-related protein PR-1 OS=Medicago truncatula GN=PR-1 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 27/118 (22%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
           K+   AQ +A++     A    L+H  N  +GENI+ GSG  +   +AV     +W DE 
Sbjct: 62  KLTHYAQWYANQRRNDCA----LEHS-NGPYGENIFWGSGVGWNPAQAVS----AWVDEK 112

Query: 63  R----------------HFTQVVWKSSSKLGVG--IARKNGHILVVANYDPPGNYQGQ 102
           +                H+TQVVW S++K+G    +   +    +  NYDPPGNY G+
Sbjct: 113 QFYNYWHNSCVDGEMCGHYTQVVWGSTTKVGCASVVCSDDKGTFMTCNYDPPGNYYGE 170

Probably involved in the defense reaction of plants against pathogens.

Medicago truncatula (taxid: 3880)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
170028182	234	cysteine-rich venom protein [Culex quinq	0.909	0.427	0.430	7e-19
195052929	167	GH13090 [Drosophila grimshawi] gi|193900	0.881	0.580	0.420	8e-18
157118968	220	cysteine-rich venom protein, putative [A	0.909	0.454	0.447	9e-18
170028184	148	cysteine-rich secretory protein-2 [Culex	0.936	0.695	0.439	1e-17
118777818	146	AGAP007583-PB [Anopheles gambiae str. PE	0.9	0.678	0.438	4e-17
91077960	583	PREDICTED: similar to LOC495415 protein	0.936	0.176	0.401	6e-17
195387305	146	GJ17497 [Drosophila virilis] gi|19414879	0.872	0.657	0.440	7e-17
195115064	145	GI14160 [Drosophila mojavensis] gi|19391	0.872	0.662	0.415	9e-17
158285403	147	AGAP007583-PA [Anopheles gambiae str. PE	0.927	0.693	0.408	2e-16
427790149	293	Putative tick salivary antigen-5 protein	0.918	0.344	0.425	2e-16

>gi|170028182|ref|XP_001841975.1| cysteine-rich venom protein [Culex quinquefasciatus] gi|167871800|gb|EDS35183.1| cysteine-rich venom protein [Culex quinquefasciatus]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 73/123 (59%), Gaps = 23/123 (18%)

Query: 4   VAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR 63
           +++ AQ WA+ L    A    +QHR NN++GEN++   G      E   +AVKSWYDEI+
Sbjct: 119 ISRYAQEWANNL----AARNTMQHRSNNRYGENLYACFGKIVVGGE---DAVKSWYDEIK 171

Query: 64  ----------------HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNV 107
                           HFTQVVWK S +LGVG+A+   ++ +V NYDPPGN+ G+YA+NV
Sbjct: 172 HYRFGQPSPGNFSQVGHFTQVVWKESRELGVGMAKNGNNVYIVCNYDPPGNFMGKYASNV 231

Query: 108 RRS 110
             S
Sbjct: 232 TSS 234

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195052929|ref|XP_001993398.1| GH13090 [Drosophila grimshawi] gi|193900457|gb|EDV99323.1| GH13090 [Drosophila grimshawi]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 22/119 (18%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
           +++K++  WA  L+        ++HR N+ +GENI+M SG   T  +AV     SWY+EI
Sbjct: 53  QLSKLSTDWAKYLLAK----NRMEHRQNSGYGENIYMASGGNLTGTDAVT----SWYNEI 104

Query: 63  R--------------HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNV 107
                          HFTQVVW+SS++LGVG AR+   I VV NYDPPGN+  Q+  NV
Sbjct: 105 HQYNWQRPSFQSNTGHFTQVVWRSSTQLGVGFARRGNTIYVVCNYDPPGNFMNQFPENV 163

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157118968|ref|XP_001659272.1| cysteine-rich venom protein, putative [Aedes aegypti] gi|108875520|gb|EAT39745.1| AAEL008473-PA [Aedes aegypti]

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 69/123 (56%), Gaps = 23/123 (18%)

Query: 4   VAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR 63
           +++ AQ WA+     IA    +QHR NN++GENI+   G        V   V+SWY EI+
Sbjct: 105 ISRYAQEWANN----IASRNVMQHRSNNRYGENIYACFGKTGVTGAEV---VQSWYSEIK 157

Query: 64  ----------------HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNV 107
                           HFTQVVWK+S  LGVGIA+   +I VV NYDPPGN+ GQY  NV
Sbjct: 158 DYRFGESNPRNFGQVGHFTQVVWKNSKHLGVGIAKNGNNIYVVCNYDPPGNFGGQYPANV 217

Query: 108 RRS 110
            RS
Sbjct: 218 TRS 220

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028184|ref|XP_001841976.1| cysteine-rich secretory protein-2 [Culex quinquefasciatus] gi|167871801|gb|EDS35184.1| cysteine-rich secretory protein-2 [Culex quinquefasciatus]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 70/123 (56%), Gaps = 20/123 (16%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
           K+ +   A+A +    IAR   LQHR + K+GENI+   G K   E +  +AV SWY EI
Sbjct: 26  KLNQAMCAYAQEWAEDIARRKTLQHRTDKKYGENIYAIFGRK---EVSGGDAVASWYAEI 82

Query: 63  R-----------------HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYAN 105
           +                 HFTQVVWK+  +LGVG+A     + VV NYDPPGNY+ QYA+
Sbjct: 83  KDYTFGEKDPGGNFGRVGHFTQVVWKNCKELGVGMATNGDSVFVVCNYDPPGNYKNQYAD 142

Query: 106 NVR 108
           NVR
Sbjct: 143 NVR 145

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118777818|ref|XP_308292.3| AGAP007583-PB [Anopheles gambiae str. PEST] gi|116132084|gb|EAA04483.4| AGAP007583-PB [Anopheles gambiae str. PEST]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 66/121 (54%), Gaps = 22/121 (18%)

Query: 2   AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE 61
           A + + AQ WA+ L    A    +QHR NNK+GEN++   G         +  V SWY+E
Sbjct: 30  AAICQYAQQWANYL----ASRNVMQHRTNNKYGENLYACFG---KTNVTAQEPVDSWYNE 82

Query: 62  IR---------------HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANN 106
           I+               HFTQVVWK S +LGVGIA K   + VV NYDPPGN  GQYA +
Sbjct: 83  IKYYRFGAAQPNFPNVGHFTQVVWKGSQQLGVGIAAKGTSVFVVCNYDPPGNVYGQYAQH 142

Query: 107 V 107
           V
Sbjct: 143 V 143

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077960|ref|XP_967490.1| PREDICTED: similar to LOC495415 protein [Tribolium castaneum] gi|270002291|gb|EEZ98738.1| hypothetical protein TcasGA2_TC001293 [Tribolium castaneum]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 67/122 (54%), Gaps = 19/122 (15%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
           ++   AQ WA     + A+ G + HR NN +GENI+       T   + ++AVK WYDEI
Sbjct: 463 EMCDYAQEWAD----TCAKSGSMCHRANNPYGENIFCVYSSDLTHVPSARDAVKEWYDEI 518

Query: 63  R--------------HFTQVVWKSSSKLGVGIARKN-GHILVVANYDPPGNYQGQYANNV 107
           +              HFTQ+VWK  + LG+ +A  N G   VVANY+P GNY GQ+ +NV
Sbjct: 519 KKHTFGVESVNHGTLHFTQIVWKGCTDLGMAMASNNKGETYVVANYNPRGNYVGQFVDNV 578

Query: 108 RR 109
            R
Sbjct: 579 PR 580

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195387305|ref|XP_002052336.1| GJ17497 [Drosophila virilis] gi|194148793|gb|EDW64491.1| GJ17497 [Drosophila virilis]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 65/118 (55%), Gaps = 22/118 (18%)

Query: 4   VAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR 63
           ++K+A  WA  L+ +      ++HR N+ +GENI+M SG      +AV     SWY EI 
Sbjct: 32  LSKLATNWAKHLLAN----NRMEHRQNSGYGENIYMASGGNLGGADAVD----SWYHEIN 83

Query: 64  --------------HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNV 107
                         HFTQVVWKSS +LGVG AR+   I VV NYDPPGNY   Y  NV
Sbjct: 84  DYNWRAPSFQMNTGHFTQVVWKSSKRLGVGFARRGNTIYVVCNYDPPGNYNNMYRENV 141

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195115064|ref|XP_002002087.1| GI14160 [Drosophila mojavensis] gi|193912662|gb|EDW11529.1| GI14160 [Drosophila mojavensis]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 64/118 (54%), Gaps = 22/118 (18%)

Query: 4   VAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR 63
           + +VA  WA  L+ + +     QHR NN++GEN++M SG       AVK    SWYDEI+
Sbjct: 32  LCRVASQWAQHLLNTNS----FQHRQNNQYGENLYMASGANLNGAAAVK----SWYDEIK 83

Query: 64  --------------HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNV 107
                         HFTQVVWK S  LG GIA++   + +V NYDPPGN    +  NV
Sbjct: 84  DYNFRSPSFQSSTGHFTQVVWKGSRLLGAGIAQRGNTVYIVCNYDPPGNMMNNFRENV 141

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285403|ref|XP_001687886.1| AGAP007583-PA [Anopheles gambiae str. PEST] gi|157019975|gb|EDO64535.1| AGAP007583-PA [Anopheles gambiae str. PEST]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 68/125 (54%), Gaps = 23/125 (18%)

Query: 2   AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE 61
           A + + AQ WA+ L    A    +QHR NNK+GEN++   G         +  V SWY+E
Sbjct: 30  AAICQYAQQWANYL----ASRNVMQHRTNNKYGENLYACFG---KTNVTAQEPVDSWYNE 82

Query: 62  IR----------------HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYAN 105
           I+                HFTQVVWK S +LGVG+A +  ++ VV NYDPPGN+  +Y  
Sbjct: 83  IKYYRFGAAQPSNFMQVGHFTQVVWKKSRRLGVGVAVQGKNVYVVCNYDPPGNFGNEYPA 142

Query: 106 NVRRS 110
           NV RS
Sbjct: 143 NVTRS 147

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427790149|gb|JAA60526.1| Putative tick salivary antigen-5 protein [Rhipicephalus pulchellus]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 67/120 (55%), Gaps = 19/120 (15%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
           ++ + AQ WA  L    A+     HRPNNK+GENI+M      T E   + AV SWY EI
Sbjct: 173 ELCRYAQEWADTL----AKKDTFCHRPNNKYGENIYMAWSSDPTKEVTGQEAVDSWYSEI 228

Query: 63  R--------------HFTQVVWKSSSKLGVGIARK-NGHILVVANYDPPGNYQGQYANNV 107
           +              HFTQV+WK+S++LG   AR   G ++VVANY+P GN  G +A NV
Sbjct: 229 KQHQFGCEPRSLGSGHFTQVIWKASTELGSARARTATGKLIVVANYNPAGNLIGSFAQNV 288

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
FB|FBgn0031412	146	CG16995 [Drosophila melanogast	0.718	0.541	0.463	1.1e-16
FB|FBgn0031407	170	CG4270 [Drosophila melanogaste	0.718	0.464	0.412	1.3e-13
TAIR|locus:2134193	172	AT4G33730 "AT4G33730" [Arabido	0.681	0.436	0.426	6.6e-10
TAIR|locus:2125244	185	AT4G31470 "AT4G31470" [Arabido	0.636	0.378	0.385	1.1e-09
SGD|S000003615	299	PRY1 "Sterol binding protein i	0.690	0.254	0.405	2.7e-09
WB|WBGene00017055	204	D2062.1 [Caenorhabditis elegan	0.418	0.225	0.454	3.8e-09
FB|FBgn0051482	195	CG31482 [Drosophila melanogast	0.745	0.420	0.349	5.9e-09
WB|WBGene00007398	207	C07A4.3 [Caenorhabditis elegan	0.463	0.246	0.482	5.9e-09
TAIR|locus:2091196	161	AT3G19690 "AT3G19690" [Arabido	0.654	0.447	0.375	1.2e-08
TAIR|locus:2117537	190	AT4G25780 "AT4G25780" [Arabido	0.709	0.410	0.382	1.6e-08

FB|FBgn0031412 CG16995 [Drosophila melanogaster (taxid:7227)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 45/97 (46%), Positives = 58/97 (59%)

Query:    25 LQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------HFTQVVW 70
             ++HR N+ +GENI+M SG      +AV+    SWY+EIR              HFTQVVW
Sbjct:    49 MEHRQNSGYGENIYMASGGNLKGADAVR----SWYEEIRQYNWNSPSFQGNTGHFTQVVW 104

Query:    71 KSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNV 107
             KSS++LGVG A+    I VV NY+PPGNY   +  NV
Sbjct:   105 KSSTELGVGFAKSGSTIYVVCNYNPPGNYNNLFRENV 141

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

FB|FBgn0031407 CG4270 [Drosophila melanogaster (taxid:7227)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 40/97 (41%), Positives = 54/97 (55%)

Query:    25 LQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------HFTQVVW 70
             + HRPN K+GENI++  G   T +  V+     WY EI               HFTQ++W
Sbjct:    74 MAHRPNPKYGENIFLSGGMDVTGDLPVE----MWYREINSYDFNKAQFVPTAGHFTQLIW 129

Query:    71 KSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNV 107
             KSS ++G G+ARK     VV NY+PPGN  G + +NV
Sbjct:   130 KSSVEMGSGVARKADRTWVVCNYNPPGNVVGLFKDNV 166

GO:0005576 "extracellular region" evidence=IEA

TAIR|locus:2134193 AT4G33730 "AT4G33730" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 38/89 (42%), Positives = 51/89 (57%)

Query:    25 LQHRPNNKFGENIWMGSGYKFTDEEAVKNAV--KSWYD---------EIRHFTQVVWKSS 73
             L+H  +  +GEN+  GSG   +  +AV   V  KS+YD            H+TQVVW+ S
Sbjct:    82 LEHS-SGPYGENLAFGSG-DMSAAQAVAMWVHEKSYYDFYSNSCHGPACGHYTQVVWRGS 139

Query:    74 SKLGVGIAR-KNGHILVVANYDPPGNYQG 101
             ++LG G A+  NG  +VV NYDP GNY G
Sbjct:   140 ARLGCGKAKCNNGASIVVCNYDPAGNYIG 168

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0010054 "trichoblast differentiation" evidence=RCA

TAIR|locus:2125244 AT4G31470 "AT4G31470" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 32/83 (38%), Positives = 47/83 (56%)

Query:    33 FGENIWMGSGYKFTDEEAVKN--AVKSWYD----------EIRHFTQVVWKSSSKLGVGI 80
             +GEN++ GSG  +T  +AV    +   +YD          +  H+TQ+VWK SS++G  I
Sbjct:   100 YGENLFWGSGKGWTPRDAVAAWASEMKYYDRRTSHCKANGDCLHYTQLVWKKSSRIGCAI 159

Query:    81 AR-KNGHILVVANYDPPGNYQGQ 102
             +  K G   ++ NYDPPGN  GQ
Sbjct:   160 SFCKTGDTFIICNYDPPGNIVGQ 182

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

SGD|S000003615 PRY1 "Sterol binding protein involved in the export of acetylated sterols" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 141 (54.7 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 41/101 (40%), Positives = 55/101 (54%)

Query:    23 GHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------HFTQV 68
             G L H     +GEN+ +G  Y   D  A   AV +WY+EI               HFTQV
Sbjct:   204 GTLTHS-GGPYGENLALG--Y---DGPA---AVDAWYNEISNYDFSNPGFSSNTGHFTQV 254

Query:    69 VWKSSSKLGVGIARKNGHI--LVVANYDPPGNYQGQYANNV 107
             VWKS++++G GI    G     V+ +YDP GNY+G+YA+NV
Sbjct:   255 VWKSTTQVGCGIKTCGGAWGDYVICSYDPAGNYEGEYADNV 295

GO:0032934 "sterol binding" evidence=IDA;IMP

GO:0005576 "extracellular region" evidence=IEA;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0015918 "sterol transport" evidence=IGI;IMP

GO:0000324 "fungal-type vacuole" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

WB|WBGene00017055 D2062.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 104 (41.7 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
 Identities = 25/55 (45%), Positives = 33/55 (60%)

Query:    64 HFTQVVWKSSSKLGVGIA-RKNGH------ILVVANYDPPGNYQGQ--YANNVRR 109
             HFTQ+VWKSS K+GVGI+  K+        +     +DPPGN   Q  Y +NV+R
Sbjct:   147 HFTQIVWKSSRKIGVGISIGKSSQPPYIPTMFHCVKFDPPGNVLAQQYYLSNVQR 201

GO:0005576 "extracellular region" evidence=IEA

FB|FBgn0051482 CG31482 [Drosophila melanogaster (taxid:7227)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 37/106 (34%), Positives = 52/106 (49%)

Query:    19 IARGGHLQHRPN--NKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR------------- 63
             +A    L+H  +    +GEN+ M S       +     V+ WYDEI              
Sbjct:    59 LANNEKLEHSSSAGQNYGENLCMRS-------QTPLQCVQDWYDEIADYDFEKPQFAMST 111

Query:    64 -HFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQYANNV 107
              HFT +VWK++ K+G+G A+ K G+  VVA Y PP N  GQ+  NV
Sbjct:   112 GHFTALVWKNAKKMGIGQAKDKKGYYWVVARYYPPVNVNGQFEENV 157

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

WB|WBGene00007398 C07A4.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query:    57 SWYDEIRHFTQVVWKSSSKLGVGIA-RKNG---HILVVANYDPPGNYQGQ--YANNVR 108
             SW  ++ HFTQ++WK+S K+GVG++  K G   H+ V   YDPPGN Q    Y +NVR
Sbjct:   138 SW-SKVGHFTQLLWKNSRKIGVGVSVAKRGTMYHVYVCIKYDPPGNMQTSEAYMDNVR 194

GO:0005576 "extracellular region" evidence=IEA

TAIR|locus:2091196 AT3G19690 "AT3G19690" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 33/88 (37%), Positives = 47/88 (53%)

Query:    30 NNKFGENIWMGSGYKFTDEEAVKNAV--KSWYD------------EIRHFTQVVWKSSSK 75
             N  FGENI M SG + + E+A +  +  K +YD               H+TQVVWK++ +
Sbjct:    72 NGPFGENIAMSSG-EMSAEDAAEMWINEKQYYDYDSNTCNDPNGGTCLHYTQVVWKNTVR 130

Query:    76 LGVG-IARKNGHILVVANYDPPGNYQGQ 102
             LG   +   +G   +  NYDPPGNY G+
Sbjct:   131 LGCAKVVCNSGGTFITCNYDPPGNYIGE 158

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2117537 AT4G25780 "AT4G25780" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 36/94 (38%), Positives = 53/94 (56%)

Query:    25 LQHRPNN-KF--GENIWMGSGYKFTDEEAVKN--AVKSWY-------DEIR---HFTQVV 69
             L+H  +N +F  GENI+ G G  ++  +AV    + K +Y       D  +   H+TQ+V
Sbjct:    94 LRHSVSNGEFNLGENIYWGYGANWSPADAVVAWASEKRFYHYGSNTCDAGQMCGHYTQIV 153

Query:    70 WKSSSKLGVG-IARKNGHILVVANYDPPGNYQGQ 102
             WKS+ ++G   +   NG I +  NYDPPGNY GQ
Sbjct:   154 WKSTRRVGCARVVCDNGGIFMTCNYDPPGNYIGQ 187

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	110
cd05382	132	cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-lik	1e-32
cd05381	136	cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like ex	2e-20
cd05380	144	cd05380, SCP_euk, SCP_euk: SCP-like extracellular	2e-17
smart00198	144	smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 fa	2e-16
cd05385	144	cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-l	3e-16
cd05384	129	cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like ex	1e-15
cd00168	122	cd00168, SCP, SCP: SCP-like extracellular protein	2e-15
cd05559	136	cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracel	4e-08
pfam00188	121	pfam00188, CAP, Cysteine-rich secretory protein fa	1e-05
cd05383	138	cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellu	1e-05

>gnl|CDD|240182 cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family

 Score =  110 bits (277), Expect = 1e-32
 Identities = 49/113 (43%), Positives = 62/113 (54%), Gaps = 21/113 (18%)

Query: 2   AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE 61
            ++AK AQ WA KL    A  G LQH   + +GEN+   SG     +   + AV SWY+E
Sbjct: 26  KELAKEAQKWAEKL----ASSGKLQHSSPSGYGENLAYASGSGP--DLTGEEAVDSWYNE 79

Query: 62  I--------------RHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNY 99
           I               HFTQVVWKSS++LGVG+A+ K G + VVA Y P GN 
Sbjct: 80  IKKYDFNKPGFSSKTGHFTQVVWKSSTELGVGVAKSKKGCVYVVARYRPAGNV 132

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms. Length = 132

>gnl|CDD|240181 cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

 Score = 79.2 bits (196), Expect = 2e-20
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 19/114 (16%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAV--KSWYD 60
            +A  AQ +A++          L H     +GEN++ GSG  ++  +AV + V  K +YD
Sbjct: 25  TLAAYAQRYANQR----RGDCALVHSNGP-YGENLFWGSGGNWSAADAVASWVSEKKYYD 79

Query: 61  ----------EIRHFTQVVWKSSSKLGVGIAR--KNGHILVVANYDPPGNYQGQ 102
                        H+TQVVW++++++G         G + ++ NYDPPGNY GQ
Sbjct: 80  YDSNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQ 133

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 136

>gnl|CDD|240180 cd05380, SCP_euk, SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes

 Score = 72.2 bits (177), Expect = 2e-17
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 26/111 (23%)

Query: 5   AKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE--- 61
           A +AQ WA   +       H   R     G+N+  GS    T EE  ++AV +WY+E   
Sbjct: 39  AALAQNWAKTCVF-----EHSPCRNTGGVGQNLAAGSSTGSTVEELAEDAVNAWYNELKD 93

Query: 62  --------------IRHFTQVVWKSSSKLGVGIAR----KNGHILVVANYD 94
                         I HFTQ+VW  ++K+G  +AR         +VV NY 
Sbjct: 94  YGFGSNPTNNFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144

This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 144

>gnl|CDD|214553 smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

 Score = 69.3 bits (170), Expect = 2e-16
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 30/115 (26%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQH-RPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE 61
           ++A  AQ WA++            H  P   +GEN+   S      +     AV+ WYDE
Sbjct: 38  ELASSAQNWANQCP--------FGHSTPRPGYGENLAWWSSSTALPDTYASAAVQLWYDE 89

Query: 62  IR-----------------HFTQVVWKSSSKLGVGIAR----KNGHILVVANYDP 95
            +                 H+TQVVW  + K+G G+A          +VV NYDP
Sbjct: 90  FQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVANCPDGTKKKTVVVCNYDP 144

Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function. Length = 144

>gnl|CDD|240185 cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family

 Score = 68.9 bits (169), Expect = 3e-16
 Identities = 43/117 (36%), Positives = 53/117 (45%), Gaps = 31/117 (26%)

Query: 5   AKVAQAWASKLIGSIARGGHLQHR----PNNKF-GENIWMGSGYKFTDEEAVKNAVKSWY 59
           AK A+AWA K         +L  R    P     GENIW+GS Y F+     KNAV SWY
Sbjct: 34  AKTARAWAKKCKFK--HNIYLGKRYKCHPKFTSVGENIWLGSIYIFS----PKNAVTSWY 87

Query: 60  DEIR--------------HFTQVVWKSSSKLG--VGIARKNGHI----LVVANYDPP 96
           +E +              H+TQVVW +S K+G  V      G I    + V NY P 
Sbjct: 88  NEGKFYDFDTNSCSRVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 144

>gnl|CDD|240184 cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

 Score = 66.9 bits (164), Expect = 1e-15
 Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 32/117 (27%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
            +A+ AQ +A+    S    G+L H     +GEN+   +GY      +  +AV +WYDEI
Sbjct: 27  TLAEYAQDYANSYDCS----GNLAHS-GGPYGENL--AAGY-----PSGTSAVDAWYDEI 74

Query: 63  R--------------HFTQVVWKSSSKLGVGIARKNGH----ILVVANYDPPGNYQG 101
                          HFTQ+VWKS+++  VG A K+        +V  YDP GN  G
Sbjct: 75  EDYDYSNPGFSEATGHFTQLVWKSTTQ--VGCAYKDCGGAWGWYIVCEYDPAGNVIG 129

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune. Length = 129

>gnl|CDD|238097 cd00168, SCP, SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

 Score = 65.9 bits (161), Expect = 2e-15
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 25/108 (23%)

Query: 2   AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE 61
           A++AK AQ +A++ I       H         GEN+  GS      +     AV++WY+E
Sbjct: 25  AELAKTAQNYANRCIFK-----HSGEDGRGFVGENLAAGS-----YDMTGPAAVQAWYNE 74

Query: 62  IR--------------HFTQVVWKSSSKLGVGIARKNGHI-LVVANYD 94
           I+              H+TQVVWK+++K+G G+A    +   VV NY 
Sbjct: 75  IKNYNFGQPGFSSGTGHYTQVVWKNTTKIGCGVAFCGSNSYYVVCNYG 122

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. Little is known about the biological roles of the bacterial and archaeal SCP domains. Length = 122

>gnl|CDD|240186 cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians

 Score = 47.5 bits (113), Expect = 4e-08
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 35/115 (30%)

Query: 4   VAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR 63
           +A +A+A+A K I       H   R + + GEN+++ +G  F        AV+ W +E  
Sbjct: 31  LAALAEAYARKCIW-----DHNPDRGHLRVGENLFISTGPPFD----ATKAVEDWNNEKL 81

Query: 64  ----------------HFTQVVWKSSSKLGVGIAR---------KNGHILVVANY 93
                           H+TQVVW ++ K+G G            +N  +L V NY
Sbjct: 82  DYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLL-VCNY 135

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 136

>gnl|CDD|215778 pfam00188, CAP, Cysteine-rich secretory protein family

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 25/106 (23%)

Query: 5   AKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVK------------ 52
           A  AQ  A+    +            + +GEN+ + S     D+  V             
Sbjct: 24  AAAAQDHAAYCADN--------GYFGHDYGENLALVSVAGKADDPGVAAVENWYDEAKDY 75

Query: 53  ---NAVKSWYDEIRHFTQVVWKSSSKLGVGIAR--KNGHILVVANY 93
                + +W     H T ++W  S+K+G  +A+        VV NY
Sbjct: 76  DAAVGINAWMSSPGHRTNLLWPKSTKVGCAVAKCGDGSSYYVVCNY 121

This is a large family of cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) that are found in a wide range of organisms, including prokaryotes and non-vertebrate eukaryotes, The nine subfamilies of the mammalian CAP 'super'family include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP 'super'family results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences. The Ca++-chelating function would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine from Heloderma horridum horridum blocks the Ca++ transporting ryanodine receptors. Length = 121

>gnl|CDD|240183 cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 29/113 (25%)

Query: 5   AKVAQAWASKLIGSIARGGHLQHR--PNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE- 61
           A+ A+ WA+    + +       R       GENI+M S Y  +  + ++    +WYDE 
Sbjct: 34  AQNAKKWANTCNLTHS---PPNGRTIGGITCGENIFM-SSYPRSWSDVIQ----AWYDEY 85

Query: 62  ---------------IRHFTQVVWKSSSKLGVGIA---RKNGHILVVANYDPP 96
                          + H+TQ+VW  S  +G  +A           V +Y P 
Sbjct: 86  KDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding. Length = 138

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
cd05381	136	SCP_PR-1_like SCP_PR-1_like: SCP-like extracellula	99.96
cd05382	132	SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracel	99.95
cd05384	129	SCP_PRY1_like SCP_PRY1_like: SCP-like extracellula	99.94
smart00198	144	SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extra	99.92
cd05385	144	SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extrac	99.92
KOG3017|consensus	225		99.92
cd05383	138	SCP_CRISP SCP_CRISP: SCP-like extracellular protei	99.91
cd05559	136	SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular prot	99.9
cd05380	144	SCP_euk SCP_euk: SCP-like extracellular protein do	99.88
cd00168	122	SCP SCP: SCP-like extracellular protein domain, fo	99.88
PF00188	124	CAP: Cysteine-rich secretory protein family; Inter	99.56
TIGR02909	127	spore_YkwD uncharacterized protein, YkwD family. M	99.15
cd05379	122	SCP_bacterial SCP_bacterial: SCP-like extracellula	99.06
COG2340	207	Uncharacterized protein with SCP/PR1 domains [Func	96.61

>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

Probab=99.96  E-value=8.4e-29  Score=161.38  Aligned_cols=94  Identities=36%  Similarity=0.725  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeCCCCChHHHHHHHHHHHHhchh----------------hh
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR----------------HF   65 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~----------------hf   65 (110)
                      ++|++.||.||++|    +.+|.+.|+.. .+||||++......+    +.++|+.|++|..                ||
T Consensus        24 ~~La~~A~~~a~~~----~~~c~~~~~~~-~~GeNi~~~~~~~~~----~~~~v~~W~~e~~~y~~~~~~~~~~~~~~hf   94 (136)
T cd05381          24 DTLAAYAQRYANQR----RGDCALVHSNG-PYGENLFWGSGGNWS----AADAVASWVSEKKYYDYDSNTCAAGKMCGHY   94 (136)
T ss_pred             HHHHHHHHHHHHHh----cCCCCcccCCC-CCCceEEEecCCCCC----HHHHHHHHHhccccCCCCCCCcCCCccchHH
Confidence            58999999999998    67778878764 499999976644445    7899999998865                99


Q ss_pred             hhhhhcccceEEEEEEEeCC--CEEEEEEecCCCCCcCccc
Q psy11882         66 TQVVWKSSSKLGVGIARKNG--HILVVANYDPPGNYQGQYA  104 (110)
Q Consensus        66 tqmvW~~t~~vGCa~~~c~~--~~~vVC~Y~P~GN~~g~~~  104 (110)
                      |||||++|++||||++.|..  +.+|||+|+|+||+.|+.+
T Consensus        95 tq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~  135 (136)
T cd05381          95 TQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRP  135 (136)
T ss_pred             HHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCC
Confidence            99999999999999999975  5899999999999999865

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family

Probab=99.95  E-value=3.6e-27  Score=152.57  Aligned_cols=90  Identities=54%  Similarity=0.924  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeC--CCCChHHHHHHHHHHHHhchh--------------hh
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSG--YKFTDEEAVKNAVKSWYDEIR--------------HF   65 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~--~~~~~~~~~~~~v~~W~~e~~--------------hf   65 (110)
                      ++|++.||.||++|    ...+.+.|+....+|||+++...  ...+    +..+|+.|++|..              ||
T Consensus        26 ~~La~~A~~~a~~c----~~~~~~~h~~~~~~GeN~~~~~~~~~~~~----~~~~v~~W~~e~~~y~~~~~~~~~~~gh~   97 (132)
T cd05382          26 KELAKEAQKWAEKL----ASSGKLQHSSPSGYGENLAYASGSGPDLT----GEEAVDSWYNEIKKYDFNKPGFSSKTGHF   97 (132)
T ss_pred             HHHHHHHHHHHHHh----hhcCceeCCCCCCCCceeEEecCCCCCCC----HHHHHHHHHhccccCCCCCCCCCCCCCCe
Confidence            58999999999999    66666888876679999997664  2345    8999999998853              99


Q ss_pred             hhhhhcccceEEEEEEEeC-CCEEEEEEecCCCCC
Q psy11882         66 TQVVWKSSSKLGVGIARKN-GHILVVANYDPPGNY   99 (110)
Q Consensus        66 tqmvW~~t~~vGCa~~~c~-~~~~vVC~Y~P~GN~   99 (110)
                      |||||++|++||||++.|. ...++||+|+|+||+
T Consensus        98 tqmvw~~t~~vGCa~~~~~~~~~~~vC~Y~p~Gn~  132 (132)
T cd05382          98 TQVVWKSSTELGVGVAKSKKGCVYVVARYRPAGNV  132 (132)
T ss_pred             EEeEecCCCceeeEEEEcCCCCEEEEEEEeCCCCC
Confidence            9999999999999999998 558999999999996

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.

>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

Probab=99.94  E-value=7.8e-27  Score=150.88  Aligned_cols=88  Identities=40%  Similarity=0.721  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeCCCCChHHHHHHHHHHHHhchh--------------hhhh
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------HFTQ   67 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~--------------hftq   67 (110)
                      ++|++.||.||++|    ...+.+.|+.. .+|||++....   +    +..+|+.|++|..              ||||
T Consensus        26 ~~La~~A~~~a~~c----~~~~~~~~~~~-~~geNi~~~~~---~----~~~~v~~W~~e~~~y~~~~~~~~~~~~h~tq   93 (129)
T cd05384          26 NTLAEYAQDYANSY----DCSGNLAHSGG-PYGENLAAGYP---S----GTSAVDAWYDEIEDYDYSNPGFSEATGHFTQ   93 (129)
T ss_pred             HHHHHHHHHHHHHh----ccCCceecCCC-CCCcEEEEecC---C----HHHHHHHHHhhhhhCCCCCCCCCCcccchhh
Confidence            58999999999999    65566788765 68999986432   4    7899999999865              9999


Q ss_pred             hhhcccceEEEEEEEeCC--CEEEEEEecCCCCCcC
Q psy11882         68 VVWKSSSKLGVGIARKNG--HILVVANYDPPGNYQG  101 (110)
Q Consensus        68 mvW~~t~~vGCa~~~c~~--~~~vVC~Y~P~GN~~g  101 (110)
                      |||++|++||||++.|.+  ..++||+|+|+||+.|
T Consensus        94 mvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g  129 (129)
T cd05384          94 LVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG  129 (129)
T ss_pred             hhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence            999999999999999986  5889999999999875

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.

>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

Probab=99.92  E-value=6.4e-25  Score=143.86  Aligned_cols=87  Identities=37%  Similarity=0.637  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeCCCCChHHHHHHHHHHHHhchh-----------------h
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR-----------------H   64 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~-----------------h   64 (110)
                      ++||+.||.||++|        .+.|+....+|||+++......+....+..+|+.||+|..                 |
T Consensus        37 ~~La~~A~~~a~~C--------~~~~~~~~~~GeNi~~~~~~~~~~~~~~~~av~~W~~e~~~y~~~~~~~~~~~~~~~h  108 (144)
T smart00198       37 CELASSAQNWANQC--------PFGHSTPRGYGENLAWWSSSTDLPITYASAAVQLWYDEFQDYGYSSNTCKDTNGKIGH  108 (144)
T ss_pred             HHHHHHHHHHHHhC--------CCcCCCcCCcCcceEEecccCcccchhHHHHHHHHHHHHHHcCCCCCccccCccchhH
Confidence            58999999999999        7778876689999997664322344568999999998875                 9


Q ss_pred             hhhhhhcccceEEEEEEEeCCC----EEEEEEecCC
Q psy11882         65 FTQVVWKSSSKLGVGIARKNGH----ILVVANYDPP   96 (110)
Q Consensus        65 ftqmvW~~t~~vGCa~~~c~~~----~~vVC~Y~P~   96 (110)
                      ||||||++|++||||++.|.++    .++||+|+|+
T Consensus       109 ftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~  144 (144)
T smart00198      109 YTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP  144 (144)
T ss_pred             HHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence            9999999999999999999764    6999999995

Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.

>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family

Probab=99.92  E-value=7.4e-25  Score=144.22  Aligned_cols=83  Identities=48%  Similarity=0.825  Sum_probs=68.7

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCC-----------CCCccceEEEEeCCCCChHHHHHHHHHHHHhchh-------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRP-----------NNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR-------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~-----------~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~-------   63 (110)
                      ++||+.||.||++|        .+.|+.           ...+||||++.....++    +.++|+.||+|..       
T Consensus        31 ~~La~~Aq~~a~~C--------~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~~~----~~~av~~W~~e~~~y~~~~~   98 (144)
T cd05385          31 AALAKTARAWAKKC--------KFKHNIYLGKRYKCHPKFTSVGENIWLGSIYIFS----PKNAVTSWYNEGKFYDFDTN   98 (144)
T ss_pred             HHHHHHHHHHHhcC--------CCCCCchhhcccccccccCcccceeeecccCCCC----HHHHHHHHHHHHHhCCCCCC
Confidence            58999999999999        555443           24689999865533455    8899999999876       


Q ss_pred             -------hhhhhhhcccceEEEEEEEeCCC------EEEEEEecCC
Q psy11882         64 -------HFTQVVWKSSSKLGVGIARKNGH------ILVVANYDPP   96 (110)
Q Consensus        64 -------hftqmvW~~t~~vGCa~~~c~~~------~~vVC~Y~P~   96 (110)
                             |||||||++|++||||++.|..+      .+|||+|+|+
T Consensus        99 ~~~~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~  144 (144)
T cd05385          99 SCSRVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA  144 (144)
T ss_pred             CCCCcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence                   99999999999999999999642      6899999994

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>KOG3017|consensus

Probab=99.92  E-value=4.8e-25  Score=154.18  Aligned_cols=101  Identities=33%  Similarity=0.593  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCC-----CCCccceEEEEeCC--CCChHHHHHHHHHHHHhchh-----------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRP-----NNKFGENIWMGSGY--KFTDEEAVKNAVKSWYDEIR-----------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~-----~~~~Gen~~~~~~~--~~~~~~~~~~~v~~W~~e~~-----------   63 (110)
                      ++||..||.||++|        .+.|+.     ...+||||++.+..  ..+.......+++.|+.|..           
T Consensus        70 ~~La~~Aq~~a~~c--------~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~~~~~a~~~w~~e~~~~~~~~~~~~~  141 (225)
T KOG3017|consen   70 DELAALAQNWANTC--------PFGHDKCVHTSFGPYGENLAWGWSSNPPLSLDTSGALAVEAWESEFQEYDWSSNTCSS  141 (225)
T ss_pred             HHHHHHHHHHHhhC--------CcccCccccccCCCCcccceeeccCCCCccccccHHHHHHHHHHHHHHccCcccccCc
Confidence            58999999999999        554553     45679999977753  12222347778888887765           


Q ss_pred             --------hhhhhhhcccceEEEEEEEeCCC------EEEEEEecCCCCCcC-cccccCCCC
Q psy11882         64 --------HFTQVVWKSSSKLGVGIARKNGH------ILVVANYDPPGNYQG-QYANNVRRS  110 (110)
Q Consensus        64 --------hftqmvW~~t~~vGCa~~~c~~~------~~vVC~Y~P~GN~~g-~~~~nV~~~  110 (110)
                              |||||||++|++||||++.|...      .++||+|+|+||..+ +..+...+|
T Consensus       142 ~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~~~y~~g~~  203 (225)
T KOG3017|consen  142 ADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGEIPYKGGKP  203 (225)
T ss_pred             ccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCCCcCCCCCc
Confidence                    99999999999999999999743      699999999966554 566666543

>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family

Probab=99.91  E-value=1.3e-24  Score=142.10  Aligned_cols=82  Identities=34%  Similarity=0.641  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCC-------CCccceEEEEeCCCCChHHHHHHHHHHHHhchh-----------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPN-------NKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR-----------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~-------~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~-----------   63 (110)
                      ++||..||.||++|        .+.|+..       ..+|||++.... ..+    ..++|+.||+|..           
T Consensus        31 ~~La~~A~~~a~~C--------~~~~~~~~~~~~~~~~~GeNl~~~~~-~~~----~~~av~~W~~e~~~y~~~~~~~~~   97 (138)
T cd05383          31 EEAAQNAKKWANTC--------NLTHSPPNGRTIGGITCGENIFMSSY-PRS----WSDVIQAWYDEYKDFKYGVGATPP   97 (138)
T ss_pred             HHHHHHHHHHHhcC--------CCcCCchhhcccCCCCcceeeeccCC-CCC----HHHHHHHHHHHHHhCCCCCCCCCC
Confidence            58999999999999        5666642       358999986553 335    7889999998876           


Q ss_pred             -----hhhhhhhcccceEEEEEEEeCC---CEEEEEEecCC
Q psy11882         64 -----HFTQVVWKSSSKLGVGIARKNG---HILVVANYDPP   96 (110)
Q Consensus        64 -----hftqmvW~~t~~vGCa~~~c~~---~~~vVC~Y~P~   96 (110)
                           |||||||++|++||||++.|.+   +.++||+|+|+
T Consensus        98 ~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~  138 (138)
T cd05383          98 GAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA  138 (138)
T ss_pred             CCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence                 9999999999999999999975   47899999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t

>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians

Probab=99.90  E-value=2.1e-23  Score=136.21  Aligned_cols=81  Identities=36%  Similarity=0.665  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCC---CccceEEEEeCCCCChHHHHHHHHHHHHhchh---------------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNN---KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR---------------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~---~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~---------------   63 (110)
                      ++||+.||.||++|        .+.|+...   .+||||+...+...+    +.++|+.||+|..               
T Consensus        29 ~~La~~A~~~a~~C--------~~~~~~~~~~~~~GeNl~~~~~~~~~----~~~~v~~W~~e~~~y~~~~~~~~~~~~~   96 (136)
T cd05559          29 EELAALAEAYARKC--------IWDHNPDRGHLRVGENLFISTGPPFD----ATKAVEDWNNEKLDYNYNTNTCAPNKMC   96 (136)
T ss_pred             HHHHHHHHHHHHhc--------cccCCCcccCCCceeeeeecCCCCCC----HHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence            58999999999999        67776643   699999876644456    8999999999876               


Q ss_pred             -hhhhhhhcccceEEEEEEEeCC--------CEEEEEEec
Q psy11882         64 -HFTQVVWKSSSKLGVGIARKNG--------HILVVANYD   94 (110)
Q Consensus        64 -hftqmvW~~t~~vGCa~~~c~~--------~~~vVC~Y~   94 (110)
                       |||||||++|++||||++.|.+        ..++||+|+
T Consensus        97 ~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~  136 (136)
T cd05559          97 GHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG  136 (136)
T ss_pred             cchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence             9999999999999999999953        378999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes

Probab=99.88  E-value=1.6e-22  Score=131.76  Aligned_cols=85  Identities=39%  Similarity=0.725  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCC---CccceEEEEeCCCCChHHHHHHHHHHHHhchh---------------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNN---KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR---------------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~---~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~---------------   63 (110)
                      ++||+.||.||++|        .+.|+...   .+|||++.......+....+.++|+.||+|..               
T Consensus        36 ~~La~~A~~~a~~C--------~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~  107 (144)
T cd05380          36 DELAALAQNWAKTC--------VFEHSPCRNTGGVGQNLAAGSSTGSTVEELAEDAVNAWYNELKDYGFGSNPTNNFNSG  107 (144)
T ss_pred             HHHHHHHHHHHhcC--------CCcCCcccCCCCCCcEEEEeccCCCCHHHHHHHHHHHHHHHHHHcCCCcCcccccccc
Confidence            58999999999999        77777653   78999997664333455669999999999972               


Q ss_pred             --hhhhhhhcccceEEEEEEEeC----CCEEEEEEec
Q psy11882         64 --HFTQVVWKSSSKLGVGIARKN----GHILVVANYD   94 (110)
Q Consensus        64 --hftqmvW~~t~~vGCa~~~c~----~~~~vVC~Y~   94 (110)
                        |||||||++|++||||++.|.    ...++||+|+
T Consensus       108 ~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~  144 (144)
T cd05380         108 IGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS  144 (144)
T ss_pred             hhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence              999999999999999999997    4599999995

This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

Probab=99.88  E-value=5e-22  Score=127.06  Aligned_cols=80  Identities=43%  Similarity=0.689  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCC---CccceEEEEeCCCCChHHHHHHHHHHHHhch--------------hh
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNN---KFGENIWMGSGYKFTDEEAVKNAVKSWYDEI--------------RH   64 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~---~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~--------------~h   64 (110)
                      ++|++.||.||++|        .+.|+...   .+|||+++.... .+    +..+++.|++|.              .|
T Consensus        25 ~~La~~A~~~a~~c--------~~~h~~~~~~~~~geNi~~~~~~-~~----~~~~v~~W~~e~~~y~~~~~~~~~~~~h   91 (122)
T cd00168          25 AELAKTAQNYANRC--------IFKHSGEDGRGFVGENLAAGSYD-MT----GPAAVQAWYNEIKNYNFGQPGFSSGTGH   91 (122)
T ss_pred             HHHHHHHHHHHhhc--------cccCCCcccCCCCCceeEEecCC-CC----HHHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence            58999999999999        77777643   689999976643 45    899999999993              39


Q ss_pred             hhhhhhcccceEEEEEEEeC-CCEEEEEEec
Q psy11882         65 FTQVVWKSSSKLGVGIARKN-GHILVVANYD   94 (110)
Q Consensus        65 ftqmvW~~t~~vGCa~~~c~-~~~~vVC~Y~   94 (110)
                      ||||||++|++||||++.|+ ++.++||+|.
T Consensus        92 ~~qmvw~~s~~vGca~~~~~~~~~~~vC~Y~  122 (122)
T cd00168          92 YTQVVWKNTTKIGCGVAFCGSNSYYVVCNYG  122 (122)
T ss_pred             hhhhhcccCCeeeeEEEEcCCCCEEEEEeCc
Confidence            99999999999999999998 5689999994

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as

>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins

Probab=99.56  E-value=4.4e-14  Score=87.35  Aligned_cols=83  Identities=30%  Similarity=0.482  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeCCCCChHHHHHHHHHHHHhchh------------------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR------------------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~------------------   63 (110)
                      ++|++.|+.+|+.|        ...+......|+++....... .........+..|+.+..                  
T Consensus        21 ~~L~~~A~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (124)
T PF00188_consen   21 PELAKAAQAHAKYC--------ANSNSLSHDSGENGSQSSRFG-SYSDAQVTAVENWYSESKNYNFQNQSIFNSWMNSPG   91 (124)
T ss_dssp             HHHHHHHHHHHTTT--------CSSEETTEESEEEEEEESSTT-SHHHHHHHHHHHHHGGGGGEETTCSTEESSTTSTCH
T ss_pred             HHHHHHHHHhhHHh--------hhhcccccccCCCCccccccc-cccchhhHHHHHHHhcccccccccchhhhccCCchh
Confidence            58999999999999        333333445688887665322 212222222888986654                  


Q ss_pred             hhhhhhhcccceEEEEEEEeCCC---EEEEEEe
Q psy11882         64 HFTQVVWKSSSKLGVGIARKNGH---ILVVANY   93 (110)
Q Consensus        64 hftqmvW~~t~~vGCa~~~c~~~---~~vVC~Y   93 (110)
                      ||+||+|.++++||||++.|.++   .++||+|
T Consensus        92 h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y  124 (124)
T PF00188_consen   92 HFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY  124 (124)
T ss_dssp             HHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred             hhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence            99999999999999999999865   9999998

Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....

>TIGR02909 spore_YkwD uncharacterized protein, YkwD family

Probab=99.15  E-value=4.2e-10  Score=72.64  Aligned_cols=81  Identities=21%  Similarity=0.338  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCC----------------CCccceEEEEeCCCCChHHHHHHHHHHHHhchhhh
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPN----------------NKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHF   65 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~----------------~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~hf   65 (110)
                      ++|++.|+.||+.+    +.++.+.|...                ...||||....   .+    +..+++.|++...|+
T Consensus        28 ~~L~~~A~~hA~~m----a~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~---~~----~~~~v~~W~~S~gH~   96 (127)
T TIGR02909        28 PELSKVARLKSEDM----RDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN---ST----VEAVHNAWMNSPGHR   96 (127)
T ss_pred             HHHHHHHHHHHHHH----HhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccC---CC----HHHHHHHHHcCHhHH
Confidence            57999999999999    76666777642                14589997533   24    788999999998899


Q ss_pred             hhhhhcccceEEEEEEEeCCC-EEEEEEe
Q psy11882         66 TQVVWKSSSKLGVGIARKNGH-ILVVANY   93 (110)
Q Consensus        66 tqmvW~~t~~vGCa~~~c~~~-~~vVC~Y   93 (110)
                      ++|+|++.+++|||+..+.++ .|.|=.|
T Consensus        97 ~nil~~~~~~~Gvg~~~~~~g~~y~~q~F  125 (127)
T TIGR02909        97 ANILNPNYTEIGVGYVEGGSGGIYWTQMF  125 (127)
T ss_pred             HHHcCCCcCeEeEEEEeCCCCCeEEEEEe
Confidence            999999999999999987654 5554443

Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.

>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea

Probab=99.06  E-value=1.3e-09  Score=68.58  Aligned_cols=81  Identities=30%  Similarity=0.432  Sum_probs=63.5

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCCC----------------ccceEEEEeCCCCChHHHHHHHHHHHHhchhhh
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNK----------------FGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHF   65 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~----------------~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~hf   65 (110)
                      ++|++.|+.+|+.+    ..++.+.|.....                +|||+.....   +    +.++++.|+++..|+
T Consensus        24 ~~l~~~A~~~a~~~----~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~~---~----~~~~~~~w~~~~~H~   92 (122)
T cd05379          24 PALAAAAQAHARDM----AANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYS---T----AEAAVDGWMNSPGHR   92 (122)
T ss_pred             hHHHHHHHHHHHHH----HhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccCC---C----HHHHHHHHhCCHhHH
Confidence            47899999999999    6555566665322                3888875442   4    899999999998899


Q ss_pred             hhhhhcccceEEEEEEEeC-CCEEEEEEe
Q psy11882         66 TQVVWKSSSKLGVGIARKN-GHILVVANY   93 (110)
Q Consensus        66 tqmvW~~t~~vGCa~~~c~-~~~~vVC~Y   93 (110)
                      .+|+|.+.+++|||+.... +..+.|..|
T Consensus        93 ~~ll~~~~~~~Gvg~~~~~~~~~y~~~~f  121 (122)
T cd05379          93 ANILNPDYTEVGVGVAYGGDGGYYWVQVF  121 (122)
T ss_pred             HHHcCCCcceeeEEEEeCCCCCeEEEEec
Confidence            9999999999999999976 446666554

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.

>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]

Probab=96.61  E-value=0.0074  Score=42.05  Aligned_cols=73  Identities=30%  Similarity=0.459  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCC----------------CCccceEEEEeCCCCChHHHHHHHHHHHHhchhhh
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPN----------------NKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHF   65 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~----------------~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~hf   65 (110)
                      ++|++.|+.+|+..    +..+.+.|...                ...||||+.....+      +..+++.|.+...|-
T Consensus       104 ~~L~~~A~~~a~~m----~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~~~------~~~~v~~Wl~S~gH~  173 (207)
T COG2340         104 ATLAKAARNHARDM----AKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSNDP------PEAAVDGWLNSPGHR  173 (207)
T ss_pred             HHHHHHHHHHHHHH----HHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCCCc------hHHHHHHhcCChhhh
Confidence            57999999999999    77777877763                13789987554221      379999999999999


Q ss_pred             hhhhhcccceEEEEEEEeC
Q psy11882         66 TQVVWKSSSKLGVGIARKN   84 (110)
Q Consensus        66 tqmvW~~t~~vGCa~~~c~   84 (110)
                      .+|+-.+-+.+|-|+..-.
T Consensus       174 ~nll~~~~~~~Gv~~~~~~  192 (207)
T COG2340         174 KNLLNPAYTEIGVGVAYDA  192 (207)
T ss_pred             hhccCcchhheeEEEEecC
Confidence            9999999999999988744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	110
1u53_A	196	Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein F		6e-07
3nt8_A	424	Crystal Structure Of Na-Asp-1 Length = 424		7e-07
1cfe_A	135	P14a, Nmr, 20 Structures Length = 135		7e-07
3q2r_A	205	Crystal Structure Of Sglipr1 Soaked With Zinc Chlor		1e-06
4aiw_A	154	Gapr-1 With Bound Inositol Hexakisphosphate Length		6e-05
1smb_A	154	Crystal Structure Of Golgi-Associated Pr-1 Protein		7e-05
2dda_A	211	Crystal Structure Of Pseudechetoxin From Pseudechis		9e-05
2ddb_A	210	Crystal Structure Of Pseudecin From Pseudechis Porp		1e-04

>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The Nematode Parasite Necator Americanus And A Vaccine Antigen For Human Hookworm Infection Length = 196

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 22/97 (22%)
Query: 28  RPNNK--FGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------------HF 65
           +PN +   GENI+M S       +A + A K+W+ E+                     H+
Sbjct: 76  QPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHY 135
Query: 66  TQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQ 102
           TQ+VW+ + KLG  +   +    VV  Y P GN  G+
Sbjct: 136 TQMVWQETVKLGCYVEACSNMCYVVCQYGPAGNMMGK 172

>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1 Length = 424

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 25/102 (24%)
Query: 24  HLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR-------------------- 63
           H + RP    GENI+  S  KF   +A K A + W++E++                    
Sbjct: 297 HGEDRPG--LGENIYKTSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLTTALWNRPNM 354
Query: 64  ---HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQ 102
              H+TQ+ W ++ KLG  +   N     V  Y P GNY G 
Sbjct: 355 QIGHYTQMAWDTTYKLGCAVVFCNDFTFGVCQYGPGGNYMGH 396

>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures Length = 135

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 61  EIRHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQ 102
           + RH+TQVVW++S +LG G AR  NG   +  NYDP GN+ GQ
Sbjct: 90  KCRHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQ 132

>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride Length = 205

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 29/103 (28%)
Query: 21  RGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------HFT 66
           +  H  H      GENIW GS   F+    V +A+ +WYDEI+              H+T
Sbjct: 69  KPPHKLHPNFTSLGENIWTGSVPIFS----VSSAITNWYDEIQDYDFKTRICKKVCGHYT 124
Query: 67  QVVWKSSSKLGVGI----------ARKNGHILVVANYDPPGNY 99
           QVVW  S K+G  +          A  NG    + NY P GNY
Sbjct: 125 QVVWADSYKVGCAVQFCPKVSGFDALSNGAHF-ICNYGPGGNY 166

>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate Length = 154

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 25/103 (24%)
Query: 25  LQHRPNN---KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------HFTQ 67
           L+H P +   + GEN+   S Y  T +E        WY EI+              HFT 
Sbjct: 52  LKHSPESSRGQCGENLAWAS-YDQTGKEVADR----WYSEIKNYNFQQPGFTSGTGHFTA 106
Query: 68  VVWKSSSKLGVGIAR-KNGHILVVANYDPPGNY--QGQYANNV 107
           +VWK++ K+GVG A   +G   VVA Y P GN   +G +  NV
Sbjct: 107 MVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENV 149

>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein Length = 154

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 25/103 (24%)
Query: 25  LQHRPNN---KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------HFTQ 67
           L+H P +   + GEN+   S Y  T +E        WY EI+              HFT 
Sbjct: 52  LKHSPESSRGQXGENLAWAS-YDQTGKEVADR----WYSEIKNYNFQQPGFTSGTGHFTA 106
Query: 68  VVWKSSSKLGVGIAR-KNGHILVVANYDPPGNY--QGQYANNV 107
           +VWK++ K+GVG A   +G   VVA Y P GN   +G +  NV
Sbjct: 107 MVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENV 149

>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis Australis Length = 211

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 29/104 (27%)
Query: 25  LQHRPNNK-------FGENIWMGSGYKFTDEEAVKNAVKSWYDEIR-------------- 63
             H P NK        GENI+M S             V++WYDEI+              
Sbjct: 50  FAHSPPNKRTVGKLRCGENIFMSS-----QPFPWSGVVQAWYDEIKNFVYGIGAKPPGSV 104
Query: 64  --HFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQYA 104
             H+TQVVW  S  +G   A+  +   L V  Y P GN +G  A
Sbjct: 105 IGHYTQVVWYKSYLIGCASAKCSSSKYLYVCQYCPAGNIRGSIA 148

>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis Porphyriacus Length = 210

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 22/90 (24%)
Query: 32  KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR----------------HFTQVVWKSSSK 75
           + GENI+M S             V++WYDEI+                H+TQVVW  S  
Sbjct: 63  RCGENIFMSS-----QPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHL 117
Query: 76  LGVGIAR-KNGHILVVANYDPPGNYQGQYA 104
           +G   A+  +   L V  Y P GN +G  A
Sbjct: 118 IGCASAKCSSSKYLYVCQYCPAGNIRGSIA 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
4aiw_A	154	Golgi-associated plant pathogenesis-related prote;	3e-32
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	2e-30
1u53_A	196	Secreted protein Asp-2; antibiotic; 1.56A {Necator	5e-29
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	6e-27
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	9e-23
2ddb_A	210	Pseudecin, channel blocker; crisp, snake venom, CN	1e-25
1xta_A	221	Natrin 1; crisp, serine protease, ION channel bloc	3e-25
3q2u_A	205	Glioma pathogenesis-related protein 1; crisp, memb	9e-25
1qnx_A	209	VES V 5, antigen 5; allergen, vespid venom; 1.90A	4e-24
2vzn_A	218	Venom allergen 3; major FIRE ANT allergen, SOL I 3	4e-24
3u3l_C	233	Tablysin 15; CAP domain, alphavbeta3 integrin, sal	2e-14
3s6s_A	206	AC-Asp-7; pathogenesis-related protein, SCP/TAPS,	2e-12

>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A* Length = 154

 Score =  109 bits (274), Expect = 3e-32
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 29/128 (22%)

Query: 2   AKVAKVAQAWASKLIGSIARGGHLQHRPNN---KFGENIWMGSGYKFTDEEAVKNAVKSW 58
             + + AQ ++  L    A    L+H P +   + GEN+   S      ++  K     W
Sbjct: 33  KNLNREAQQYSEAL----ASTRILKHSPESSRGQCGENLAWASY-----DQTGKEVADRW 83

Query: 59  YDEIR--------------HFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNY--QG 101
           Y EI+              HFT +VWK++ K+GVG A   +G   VVA Y P GN   +G
Sbjct: 84  YSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEG 143

Query: 102 QYANNVRR 109
            +  NV  
Sbjct: 144 FFEENVLP 151

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1 Length = 135

 Score =  104 bits (261), Expect = 2e-30
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 29/118 (24%)

Query: 2   AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE 61
           A +A  AQ +A+   G      +L H      GEN+  G G         + AV+ W  E
Sbjct: 27  ANLASRAQNYANSRAG----DCNLIHSG---AGENLAKGGGDF-----TGRAAVQLWVSE 74

Query: 62  IR----------------HFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQ 102
                             H+TQVVW++S +LG G AR  NG   +  NYDP GN+ GQ
Sbjct: 75  RPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQ 132

>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus} Length = 196

 Score =  102 bits (256), Expect = 5e-29
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 25/120 (20%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE- 61
           +V K A   A + +       H Q       GENI+M S       +A + A K+W+ E 
Sbjct: 58  EVEKTAMNNAKQCVF-----KHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGEL 112

Query: 62  -------------------IRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQ 102
                              + H+TQ+VW+ + KLG  +   +    VV  Y P GN  G+
Sbjct: 113 AEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSNMCYVVCQYGPAGNMMGK 172

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424

 Score =  101 bits (252), Expect = 6e-27
 Identities = 32/123 (26%), Positives = 44/123 (35%), Gaps = 28/123 (22%)

Query: 4   VAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE-- 61
           V   A    +K +       H         GENI+  S  KF   +A K A + W++E  
Sbjct: 280 VEASAIRHGNKCVY-----QHSHGEDRPGLGENIYKTSVLKFDKNKAAKQASQLWWNELK 334

Query: 62  ---------------------IRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQ 100
                                I H+TQ+ W ++ KLG  +   N     V  Y P GNY 
Sbjct: 335 EYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCNDFTFGVCQYGPGGNYM 394

Query: 101 GQY 103
           G  
Sbjct: 395 GHV 397

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424

 Score = 90.2 bits (223), Expect = 9e-23
 Identities = 13/119 (10%), Positives = 28/119 (23%), Gaps = 26/119 (21%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKF--TDEEAVKNAVKSWYD 60
            + +  Q                         +N    S           ++  +  W+ 
Sbjct: 77  AMEQQLQDAIQSCP--------SGFAGIQGVAQNTMSWSSSGGYPDPSVKIEPTLSGWWS 128

Query: 61  EIR----------------HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQY 103
             +                 F+ +V+  ++KLG         + V   Y+  G    Q 
Sbjct: 129 GAKKNGVGPDNKYTGGGLFAFSNMVYSETTKLGCAYKVCGTKLAVSCIYNGVGYITNQP 187

>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A Length = 210

 Score = 94.6 bits (235), Expect = 1e-25
 Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 23/124 (18%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
             A+ A+ WA +   +     + +     + GENI+M S             V++WYDEI
Sbjct: 35  HAAQNAKRWADRCTFA-HSPPNTRTVGKLRCGENIFMSSQ-----PFPWSGVVQAWYDEI 88

Query: 63  R----------------HFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQYAN 105
           +                H+TQVVW  S  +G   A+  +   L V  Y P GN +G  A 
Sbjct: 89  KNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCSSSKYLYVCQYCPAGNIRGSIAT 148

Query: 106 NVRR 109
             + 
Sbjct: 149 PYKS 152

>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A Length = 221

 Score = 93.4 bits (232), Expect = 3e-25
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 25/121 (20%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
           + A  A+ WA+    +     +L+     + GE+I+M S  +          +  W+DE 
Sbjct: 44  EAASNAERWANTCSLN-HSPDNLRVLEGIQCGESIYMSSNAR-----TWTEIIHLWHDEY 97

Query: 63  R----------------HFTQVVWKSSSKLGVGIAR---KNGHILVVANYDPPGNYQGQY 103
           +                H+TQ+VW  + + G  ++           V  Y P GN+QG+ 
Sbjct: 98  KNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKT 157

Query: 104 A 104
           A
Sbjct: 158 A 158

>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A Length = 205

 Score = 91.9 bits (228), Expect = 9e-25
 Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 30/126 (23%)

Query: 3   KVAKVAQAWASKLI---GSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWY 59
            +A++A+AWAS       +  +  H  H      GENIW GS   F+    V +A+ +WY
Sbjct: 48  ALAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIFS----VSSAITNWY 103

Query: 60  DE--------------IRHFTQVVWKSSSKLGVGIAR---------KNGHILVVANYDPP 96
           DE                H+TQVVW  S K+G  +            +     + NY P 
Sbjct: 104 DEIQDYDFKTRICKKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPG 163

Query: 97  GNYQGQ 102
           GNY   
Sbjct: 164 GNYPTW 169

>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1 Length = 209

 Score = 90.3 bits (224), Expect = 4e-24
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 25/121 (20%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE- 61
           ++A VAQ WA++           +     + G+N+ +         +     VK W DE 
Sbjct: 87  ELAYVAQVWANQCQYG---HDTCRDVAKYQVGQNVALTGSTA-AKYDDPVKLVKMWEDEV 142

Query: 62  ----------------IRHFTQVVWKSSSKLGVGIAR----KNGHILVVANYDPPGNYQG 101
                             H+TQ+VW ++ ++G G  +    K     +V NY P GN++ 
Sbjct: 143 KDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKN 202

Query: 102 Q 102
           +
Sbjct: 203 E 203

>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta} Length = 218

 Score = 90.4 bits (224), Expect = 4e-24
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 30/126 (23%)

Query: 4   VAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE-- 61
           +A +AQ WA++           ++      G+NI   S     ++      +  WY+E  
Sbjct: 85  LATIAQRWANQCTFE---HDACRNVERFAVGQNIAATSSSG-KNKSTPNEMILLWYNEVK 140

Query: 62  -------------------IRHFTQVVWKSSSKLGVGIAR-----KNGHILVVANYDPPG 97
                              + H+TQ+VW  ++K+G G              +V NY P G
Sbjct: 141 DFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAG 200

Query: 98  NYQGQY 103
           N  G  
Sbjct: 201 NVLGAP 206

>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C* Length = 233

 Score = 65.5 bits (159), Expect = 2e-14
 Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 28/124 (22%)

Query: 4   VAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTD-EEAVKNAVKSWYDE- 61
           +A +A+      +G                G+  +  SG K    +E + +AVK  + + 
Sbjct: 77  LAGLAKRHTKGCVGE--THACRNTERFWLPGQLNFKYSGDKLPRIKELIDDAVKKGHLQK 134

Query: 62  -------------------IRHFTQVVWKSSSKLGVGIAR----KNGHILVVANYDPPGN 98
                              ++     +    + +G G+           L+  N+    N
Sbjct: 135 HNITREIIENYRENGPNGDVKELALAISDRVTAVGCGLTTWEDGAKARALLTCNFS-SQN 193

Query: 99  YQGQ 102
            +G+
Sbjct: 194 TRGR 197

>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A Length = 206

 Score = 59.7 bits (144), Expect = 2e-12
 Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 17/105 (16%)

Query: 5   AKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRH 64
            + A+                 +   +  G   + G     +   A+K  ++++  +   
Sbjct: 57  EEEARKEIKLPG----------YADLHHRGVTRFSGDYEG-SAISALKEILETFSADKNS 105

Query: 65  FTQVVWKSSSKLGVGIARKNG------HILVVANYDPPGNYQGQY 103
             QVV+  +++ G     +         +  V  YD        +
Sbjct: 106 MRQVVYPKATRFGCSGRLRRNKKTGMRRMDWVCVYDKKPKDGESF 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
4aiw_A	154	Golgi-associated plant pathogenesis-related prote;	100.0
1u53_A	196	Secreted protein Asp-2; antibiotic; 1.56A {Necator	99.97
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	99.97
2vzn_A	218	Venom allergen 3; major FIRE ANT allergen, SOL I 3	99.96
3q2u_A	205	Glioma pathogenesis-related protein 1; crisp, memb	99.96
2ddb_A	210	Pseudecin, channel blocker; crisp, snake venom, CN	99.96
1xta_A	221	Natrin 1; crisp, serine protease, ION channel bloc	99.95
1qnx_A	209	VES V 5, antigen 5; allergen, vespid venom; 1.90A	99.95
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	99.95
3u3l_C	233	Tablysin 15; CAP domain, alphavbeta3 integrin, sal	99.95
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	99.94
3s6s_A	206	AC-Asp-7; pathogenesis-related protein, SCP/TAPS,	99.91
4ifa_A	339	Extracellular protein containing A SCP domain; vac	98.58
4h0a_A	323	Uncharacterized protein; CAP protein family, cyste	97.63

>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A*

Probab=100.00  E-value=2.9e-36  Score=200.09  Aligned_cols=100  Identities=37%  Similarity=0.616  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCC---CCCccceEEEEeCCCCChHHHHHHHHHHHHhchh--------------h
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRP---NNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------H   64 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~---~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~--------------h   64 (110)
                      ++|++.||.||++|    +.+|.+.|+.   ...+||||++... ..+    +.++|+.||+|.+              |
T Consensus        33 ~~La~~Aq~~A~~~----a~~~~~~hs~~~~~~~~GeNl~~~~~-~~~----~~~~v~~W~~E~~~y~~~~~~~~~~~gH  103 (154)
T 4aiw_A           33 KNLNREAQQYSEAL----ASTRILKHSPESSRGQCGENLAWASY-DQT----GKEVADRWYSEIKNYNFQQPGFTSGTGH  103 (154)
T ss_dssp             HHHHHHHHHHHHHH----HHHTCCCCCHHHHTTSSEEEEEEESS-CCC----HHHHHHHHHGGGGGCCTTSCSCCTTTHH
T ss_pred             HHHHHHHHHHHHHh----hhcccccccccCCCCCCCeeeEecCC-CCC----HHHHHHHHHHHhhhcccCCCCcCCCcCC
Confidence            58999999999998    7777888875   4578999997663 456    8899999999987              9


Q ss_pred             hhhhhhcccceEEEEEEEeCC-CEEEEEEecCCCCCcCc--ccccCCCC
Q psy11882         65 FTQVVWKSSSKLGVGIARKNG-HILVVANYDPPGNYQGQ--YANNVRRS  110 (110)
Q Consensus        65 ftqmvW~~t~~vGCa~~~c~~-~~~vVC~Y~P~GN~~g~--~~~nV~~~  110 (110)
                      ||||||++|++||||++.|.+ ..++||+|+|+||+.|+  |++||+||
T Consensus       104 fTQ~VW~~t~~vGCg~a~c~~~~~~vVC~Y~P~GN~~g~~~y~~NV~pP  152 (154)
T 4aiw_A          104 FTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVLPP  152 (154)
T ss_dssp             HHHHHCTTCCEEEEEEEECTTSCEEEEEEEESCCCCCSTTHHHHHSCCC
T ss_pred             eeeeehhhhceeeeEEEEcCCCCEEEEEEEeCCCccCCccchHHhCCCC
Confidence            999999999999999999976 48999999999999876  99999998

>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}

Probab=99.97  E-value=7.1e-31  Score=179.62  Aligned_cols=101  Identities=31%  Similarity=0.538  Sum_probs=88.0

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCC---CCCccceEEEEeCCCCChHHHHHHHHHHHHhchh---------------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRP---NNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR---------------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~---~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~---------------   63 (110)
                      ++||+.||.||++|        .+.|+.   ...+||||++......+.+..+.++|+.||+|.+               
T Consensus        57 ~~La~~Aq~~A~~C--------~~~h~~~~~~~~~GeNl~~~~~~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~  128 (196)
T 1u53_A           57 CEVEKTAMNNAKQC--------VFKHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLF  128 (196)
T ss_dssp             HHHHHHHHHHHTTC--------CCCCCCGGGSTTCEEEEEEESCTTCCHHHHHHHHHHHHHTHHHHHCCCSCCBCCHHHH
T ss_pred             HHHHHHHHHHHHhC--------ccCCCccccCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHHcCCCcccccCcccc
Confidence            58999999999999        788883   3468999997654444555678999999998753               


Q ss_pred             -----hhhhhhhcccceEEEEEEEeCCCEEEEEEecCCCCCcCcccccCCCC
Q psy11882         64 -----HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNVRRS  110 (110)
Q Consensus        64 -----hftqmvW~~t~~vGCa~~~c~~~~~vVC~Y~P~GN~~g~~~~nV~~~  110 (110)
                           |||||||++|++||||++.|....++||+|+|+||+.|++.+++++|
T Consensus       129 ~~~~ghfTQ~VW~~t~~vGCa~~~c~~~~~~VC~Y~p~GN~~g~~~Y~~G~p  180 (196)
T 1u53_A          129 SRGVGHYTQMVWQETVKLGCYVEACSNMCYVVCQYGPAGNMMGKDIYEKGEP  180 (196)
T ss_dssp             TTTCHHHHHHTCTTCCEEEEEEEECSSCEEEEEEEESCCCCTTSBSSCBSST
T ss_pred             CccccchheeeecccCEEeeEEEEeCCCEEEEEEeCCCCCCCCCcCCccCCC
Confidence                 99999999999999999999888999999999999999999988876

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1

Probab=99.97  E-value=9.1e-31  Score=170.14  Aligned_cols=91  Identities=43%  Similarity=0.652  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeCCCCChHHHHHHHHHHHHhchh----------------hh
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR----------------HF   65 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~----------------hf   65 (110)
                      ++|++.||.||++|    +.+|.+.|+++   ||||++.. ...+    +.++|+.|++|.+                ||
T Consensus        27 ~~La~~Aq~~A~~~----a~~c~~~hs~~---GENla~~~-~~~~----~~~~v~~W~~E~~~y~~~~~~~~~~~~~gHf   94 (135)
T 1cfe_A           27 ANLASRAQNYANSR----AGDCNLIHSGA---GENLAKGG-GDFT----GRAAVQLWVSERPSYNYATNQCVGGKKCRHY   94 (135)
T ss_dssp             SHHHHHHHHHHHHH----TTTCCSCSCSS---SBCCEECS-SSCC----HHHHHHHHHTTGGGEEGGGTEECSSSCCSSH
T ss_pred             HHHHHHHHHHHHHH----hcCCCcccCCC---CeEEEEec-CCCC----HHHHHHHHHhHHhhCCCCCCCcCCCCcccce
Confidence            58999999999977    66779999874   99999765 3456    8999999999974                99


Q ss_pred             hhhhhcccceEEEEEEEeCC-CEEEEEEecCCCCCcCccc
Q psy11882         66 TQVVWKSSSKLGVGIARKNG-HILVVANYDPPGNYQGQYA  104 (110)
Q Consensus        66 tqmvW~~t~~vGCa~~~c~~-~~~vVC~Y~P~GN~~g~~~  104 (110)
                      |||||++|++||||++.|.+ ..++||+|+|+||+.|+++
T Consensus        95 TQ~vW~~t~~vGCa~~~c~~~~~~~VC~Y~p~GN~~g~~p  134 (135)
T 1cfe_A           95 TQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQRP  134 (135)
T ss_dssp             HHHHCTTCCEEEEEEEECTTSSEEEEEECSSCCSCTTSCC
T ss_pred             eeeEEccCcEEeEEEEEeCCCCEEEEEEEeCCCCCCCCCC
Confidence            99999999999999999974 6899999999999999865

>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta}

Probab=99.96  E-value=2.8e-29  Score=174.33  Aligned_cols=96  Identities=30%  Similarity=0.596  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCC-----CCCccceEEEEeCCC---CChHHHHHHHHHHHHhchh----------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRP-----NNKFGENIWMGSGYK---FTDEEAVKNAVKSWYDEIR----------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~-----~~~~Gen~~~~~~~~---~~~~~~~~~~v~~W~~e~~----------   63 (110)
                      ++||+.||.||++|        .+.|+.     ...+||||++.....   .+    ..++|+.||+|.+          
T Consensus        83 ~~La~~Aq~~A~~C--------~~~Hs~c~~~~~~~~GeNl~~~~~~~~~~~~----~~~av~~W~~E~~~y~~~~~~~~  150 (218)
T 2vzn_A           83 PELATIAQRWANQC--------TFEHDACRNVERFAVGQNIAATSSSGKNKST----PNEMILLWYNEVKDFDNRWISSF  150 (218)
T ss_dssp             HHHHHHHHHHHTTC--------CSSCCSCCCCSSSCCEEEEEEEEECC-CCCC----HHHHHHHHHGGGGGCCGGGSSSC
T ss_pred             HHHHHHHHHHHHhC--------CcCCCCCCCCccCCCceEEEEEeccCCccch----HHHHHHHHHHHHHhcCcccccCC
Confidence            58999999999999        777776     124899999765321   23    5699999998753          


Q ss_pred             -----------hhhhhhhcccceEEEEEEEeCC-----CEEEEEEecCCCCCcCcccccCCC
Q psy11882         64 -----------HFTQVVWKSSSKLGVGIARKNG-----HILVVANYDPPGNYQGQYANNVRR  109 (110)
Q Consensus        64 -----------hftqmvW~~t~~vGCa~~~c~~-----~~~vVC~Y~P~GN~~g~~~~nV~~  109 (110)
                                 |||||||++|++||||++.|..     ..++||+|+|+||+.|++.+||+.
T Consensus       151 ~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~vVC~Y~P~GN~~g~~~y~~~~  212 (218)
T 2vzn_A          151 PSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAPIYEIKK  212 (218)
T ss_dssp             CCCHHHHHHHHHHHHHTCTTCCEEEEEEEEEECTTSCEEEEEEEEEESCCCCTTSCSSCBCC
T ss_pred             CCCcccCCCcchHHHHHHHhcCEEeEEEEEEeCCCCeEEEEEEEEECCCCCCCCCcccccCc
Confidence                       9999999999999999999964     269999999999999999999975

>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A

Probab=99.96  E-value=1.1e-28  Score=169.71  Aligned_cols=96  Identities=39%  Similarity=0.729  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCC-----------CCCccceEEEEeCCCCChHHHHHHHHHHHHhchh-------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRP-----------NNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR-------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~-----------~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~-------   63 (110)
                      ++||+.||.||++|        .+.|+.           ...+||||++.....++    +.++|+.||+|.+       
T Consensus        47 ~~La~~Aq~~A~~C--------~~~h~~~~~~~~~~~~~~~~~GeNl~~~~~~~~~----~~~~v~~W~~E~~~y~~~~~  114 (205)
T 3q2u_A           47 PALAQIAKAWASNC--------QFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIFS----VSSAITNWYDEIQDYDFKTR  114 (205)
T ss_dssp             HHHHHHHHHHHTTC--------BSSCCTTSSTTCCSSTTCSSCEEEEEEEETTTCC----HHHHHHHHHGGGGGEETTTT
T ss_pred             HHHHHHHHHHHHhC--------CCCCCccccccccccCCCCCCceEEEEccCCCCC----HHHHHHHHHhHHHhcCCCCC
Confidence            58999999999999        555543           24789999876654566    8899999999985       


Q ss_pred             -------hhhhhhhcccceEEEEEEEeCC---------CEEEEEEecCCCCCcCcccccCCCC
Q psy11882         64 -------HFTQVVWKSSSKLGVGIARKNG---------HILVVANYDPPGNYQGQYANNVRRS  110 (110)
Q Consensus        64 -------hftqmvW~~t~~vGCa~~~c~~---------~~~vVC~Y~P~GN~~g~~~~nV~~~  110 (110)
                             |||||||++|++||||++.|..         +.++||+|.|+||+ ++..+..++|
T Consensus       115 ~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~g~~~~~~~~~~VC~Y~P~GN~-~~~pY~~G~p  176 (205)
T 3q2u_A          115 ICKKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNY-PTWPYKRGAT  176 (205)
T ss_dssp             EESSCCHHHHHHTCTTCCEEEEEEEEESCCBTCSSCCSEEEEEEEEESCCCC-SSCSSCBSST
T ss_pred             CccchhHHHHHHHhhcccEeeeEEEEcCCCcCcccccccEEEEEEEECCCCc-CCCCCCcCcc
Confidence                   9999999999999999999973         47999999999999 6666666655

>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A

Probab=99.96  E-value=1.1e-28  Score=170.79  Aligned_cols=96  Identities=38%  Similarity=0.694  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCC-------CccceEEEEeCCCCChHHHHHHHHHHHHhchh-----------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNN-------KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR-----------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~-------~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~-----------   63 (110)
                      ++||+.||.||++|        .+.|+...       .+||||++... ..+    +.++|+.||+|.+           
T Consensus        34 ~~La~~Aq~~A~~C--------~~~Hs~~~~r~~~~~~~GENl~~~~~-~~~----~~~av~~W~~E~~~y~~~~~~~~~  100 (210)
T 2ddb_A           34 SHAAQNAKRWADRC--------TFAHSPPNTRTVGKLRCGENIFMSSQ-PFP----WSGVVQAWYDEIKNFVYGIGAKPP  100 (210)
T ss_dssp             HHHHHHHHHHHTTT--------CCSCCCGGGSEETTEECEEEEEEESS-CCC----HHHHHHHHHGGGGGEETTTEESST
T ss_pred             HHHHHHHHHHHhcC--------CCCCCCccccccCCCCCcceEEEEcC-CCC----HHHHHHHHHHHhhhCCCCCCCCCC
Confidence            58999999999999        78887521       48999997653 345    7899999999975           


Q ss_pred             -----hhhhhhhcccceEEEEEEEeCC-CEEEEEEecCCCCCcCc--ccccCCCC
Q psy11882         64 -----HFTQVVWKSSSKLGVGIARKNG-HILVVANYDPPGNYQGQ--YANNVRRS  110 (110)
Q Consensus        64 -----hftqmvW~~t~~vGCa~~~c~~-~~~vVC~Y~P~GN~~g~--~~~nV~~~  110 (110)
                           |||||||++|++||||++.|.. .+++||+|+|+||+.|+  ..+..++|
T Consensus       101 ~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~VC~Y~P~GN~~g~~~~pY~~G~p  155 (210)
T 2ddb_A          101 GSVIGHYTQVVWYKSHLIGCASAKCSSSKYLYVCQYCPAGNIRGSIATPYKSGPP  155 (210)
T ss_dssp             TSCCHHHHHHTCTTCCEEEEEEEEEETTEEEEEEEEESCSSSTTCTTCSSCBSST
T ss_pred             CCcccchhhhhhhhccEeeEEEEEcCCCCEEEEEEeeCCCCCCCCccCCCCcCcC
Confidence                 9999999999999999999976 58999999999999999  45666554

>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A

Probab=99.95  E-value=3.4e-28  Score=169.45  Aligned_cols=96  Identities=31%  Similarity=0.615  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCC-------CccceEEEEeCCCCChHHHHHHHHHHHHhchh-----------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNN-------KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR-----------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~-------~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~-----------   63 (110)
                      ++||+.||.||++|        .+.|+...       .+||||++... ..+    +.++|+.||+|.+           
T Consensus        43 ~~La~~Aq~~A~~C--------~~~Hs~~~~r~~~~~~~GENl~~~~~-~~~----~~~av~~W~~E~~~y~~~~~~~~~  109 (221)
T 1xta_A           43 PEAASNAERWANTC--------SLNHSPDNLRVLEGIQCGESIYMSSN-ART----WTEIIHLWHDEYKNFVYGVGASPP  109 (221)
T ss_dssp             HHHHHHHHHHHTTT--------CCSCCCGGGCEETTEECEEEEEEESS-CCC----HHHHHHHHHGGGGGEETTTEESST
T ss_pred             HHHHHHHHHHHhcC--------CCCCcCccccccCCCCCceEEEeecC-CCC----HHHHHHHHHHHHHhcCCCCCCCCC
Confidence            58999999999999        78887521       48999997653 345    7899999999975           


Q ss_pred             -----hhhhhhhcccceEEEEEEEeCC---CEEEEEEecCCCCCcCc--ccccCCCC
Q psy11882         64 -----HFTQVVWKSSSKLGVGIARKNG---HILVVANYDPPGNYQGQ--YANNVRRS  110 (110)
Q Consensus        64 -----hftqmvW~~t~~vGCa~~~c~~---~~~vVC~Y~P~GN~~g~--~~~nV~~~  110 (110)
                           |||||||++|++||||++.|..   ..++||+|+|+||+.|+  ..+..++|
T Consensus       110 ~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~VC~Y~P~GN~~g~~~~pY~~G~p  166 (221)
T 1xta_A          110 GSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTATPYKLGPP  166 (221)
T ss_dssp             TCCCHHHHHHTCTTCCEEEEEEEECTTSSSSEEEEEEEESCCCCTTTTTCSSCBSST
T ss_pred             CCchhHHHHHHHHhcCEeeEEEEEcCCCCccEEEEEEEeCCcCCCCCcCCCcccCCc
Confidence                 9999999999999999999975   48999999999999999  45655554

>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1

Probab=99.95  E-value=6.6e-28  Score=166.46  Aligned_cols=93  Identities=29%  Similarity=0.547  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCC-----CCccceEEEEeCC---CCChHHHHHHHHHHHHhchh----------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPN-----NKFGENIWMGSGY---KFTDEEAVKNAVKSWYDEIR----------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~-----~~~Gen~~~~~~~---~~~~~~~~~~~v~~W~~e~~----------   63 (110)
                      ++||+.||.||++|        .+.|+..     ..+||||++....   ..+    +.++|+.||+|..          
T Consensus        86 ~~La~~Aq~~A~~C--------~~~h~~~~~~~~~~~GeNl~~~~~~~~~~~~----~~~av~~W~~E~~~y~~~~~~~~  153 (209)
T 1qnx_A           86 DELAYVAQVWANQC--------QYGHDTCRDVAKYQVGQNVALTGSTAAKYDD----PVKLVKMWEDEVKDYNPKKKFSG  153 (209)
T ss_dssp             HHHHHHHHHHHTTC--------CCSCCSCCCCSSSCCEEEEEEEEESSSCCCC----HHHHHHHHHGGGGGCCTTSCGGG
T ss_pred             HHHHHHHHHHHhcC--------cccCCCccCCCCCCCccEEEEecccCCCccc----HHHHHHHHHHhhhhcCCccCCCC
Confidence            58999999999999        7777751     2489999976532   234    7899999999874          


Q ss_pred             -------hhhhhhhcccceEEEEEEEeCC----CEEEEEEecCCCCCcCccccc
Q psy11882         64 -------HFTQVVWKSSSKLGVGIARKNG----HILVVANYDPPGNYQGQYANN  106 (110)
Q Consensus        64 -------hftqmvW~~t~~vGCa~~~c~~----~~~vVC~Y~P~GN~~g~~~~n  106 (110)
                             |||||||++|++||||++.|..    ..++||+|+|+||+.|+..+.
T Consensus       154 ~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~P~GN~~g~~~Y~  207 (209)
T 1qnx_A          154 NDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELYQ  207 (209)
T ss_dssp             SCHHHHHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEEESCCCCTTSCSSC
T ss_pred             CCCCcccchhhhhhhcCcEeeeEEEEEeCCCceeEEEEEEeCCCCCCCCCCCCe
Confidence                   9999999999999999999963    268999999999999987654

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}

Probab=99.95  E-value=1.8e-27  Score=178.38  Aligned_cols=101  Identities=32%  Similarity=0.562  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCC---CCccceEEEEeCCCCChHHHHHHHHHHHHhchh---------------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPN---NKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR---------------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~---~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~---------------   63 (110)
                      ++||+.||.||++|        .+.|+..   ..+||||++......+....+.++|+.||+|.+               
T Consensus       278 ~~La~~Aq~~a~~C--------~~~h~~~~~~~~~GeNl~~~~~~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~  349 (424)
T 3nt8_A          278 CEVEASAIRHGNKC--------VYQHSHGEDRPGLGENIYKTSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLTTALW  349 (424)
T ss_dssp             HHHHHHHHHHHTTC--------CSSCCCTTTSTTCEEEEEEESSTTCCHHHHHHHHHHHHHTHHHHTCCCTTCBCCHHHH
T ss_pred             HHHHHHHHHHHHhC--------cccCCCccccCccceeEEecccCCCchHHHHHHHHHHHHHHHHhcCCCCCcccccccc
Confidence            58999999999999        7888763   369999997765445555678999999998763               


Q ss_pred             --------hhhhhhhcccceEEEEEEEeCCCEEEEEEecCCCCCcCcccccCCCC
Q psy11882         64 --------HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNVRRS  110 (110)
Q Consensus        64 --------hftqmvW~~t~~vGCa~~~c~~~~~vVC~Y~P~GN~~g~~~~nV~~~  110 (110)
                              |||||||++|++||||++.|.++.++||+|+|+||+.|+..+..++|
T Consensus       350 ~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~VC~Y~p~GN~~g~~~Y~~G~p  404 (424)
T 3nt8_A          350 NRPNMQIGHYTQMAWDTTYKLGCAVVFCNDFTFGVCQYGPGGNYMGHVIYTMGQP  404 (424)
T ss_dssp             TCTTCCCHHHHHHHCTTCCEEEEEEEECSSSEEEEEEEESCCCCTTSBSSCBSST
T ss_pred             cCCCCcccchHHHhhhhcceeeeEEEEeCCCeEEEEEecCCCCcCCCCCCCCCcc
Confidence                    89999999999999999999988999999999999999998888776

>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C*

Probab=99.95  E-value=4.6e-27  Score=164.53  Aligned_cols=100  Identities=17%  Similarity=0.154  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCC------CCCccceEEEEeCCC-CChHHHHHHHHHHHHhchh-----------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRP------NNKFGENIWMGSGYK-FTDEEAVKNAVKSWYDEIR-----------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~------~~~~Gen~~~~~~~~-~~~~~~~~~~v~~W~~e~~-----------   63 (110)
                      ++||+.||.||++|        .+.|+.      ...+|||++...+.. .+....+..+|+.||+|.+           
T Consensus        75 ~~La~~Aq~~a~~C--------~~~h~~c~~~~~~~~~Gen~~~~~~~~~~~~~~~~~~av~~W~~E~~~y~~~~~~~~~  146 (233)
T 3u3l_C           75 AELAGLAKRHTKGC--------VGETHACRNTERFWLPGQLNFKYSGDKLPRIKELIDDAVKKGHLQKHNITREIIENYR  146 (233)
T ss_dssp             HHHHHHHHHHHTTC--------CSCCCCBCCCSSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHGGGGTCCHHHHHSCC
T ss_pred             HHHHHHHHHHHHhC--------CCCCCcccccCcCCcCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhhhCHHHHhcCC
Confidence            58999999999999        677765      125899887554433 4566778999999999865           


Q ss_pred             ---------hhhhhhhcccceEEEEEEEeCC----CEEEEEEecCCCCCcCcccccCC-CC
Q psy11882         64 ---------HFTQVVWKSSSKLGVGIARKNG----HILVVANYDPPGNYQGQYANNVR-RS  110 (110)
Q Consensus        64 ---------hftqmvW~~t~~vGCa~~~c~~----~~~vVC~Y~P~GN~~g~~~~nV~-~~  110 (110)
                               |||||||++|++||||++.|..    .+++||+|+| ||+.|+..+..+ +|
T Consensus       147 ~~~~~~~~gHfTQmVW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~p-GN~~g~~~Y~~G~~p  206 (233)
T 3u3l_C          147 ENGPNGDVKELALAISDRVTAVGCGLTTWEDGAKARALLTCNFSS-QNTRGRPVYKIGNSP  206 (233)
T ss_dssp             SCC--CCCHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEESC-CCCTTSCSSCBCSST
T ss_pred             CcccccchhhhHHHhhhcCCeeeeEEEEEEcCCeeEEEEEEECCC-CCCCCCceeeCCCCc
Confidence                     9999999999999999999963    3799999998 999999877776 54

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}

Probab=99.94  E-value=1.9e-26  Score=172.84  Aligned_cols=101  Identities=13%  Similarity=0.144  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeC--CCCChHHHHHHHHHHHHhchh----------------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSG--YKFTDEEAVKNAVKSWYDEIR----------------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~--~~~~~~~~~~~~v~~W~~e~~----------------   63 (110)
                      ++||+.||.||++|        .+.|+....+||||+....  ...+....+.++|+.||+|.+                
T Consensus        76 ~eLa~~Aq~~a~~C--------~~~h~~~~~~GeNl~~~~~~~~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~g  147 (424)
T 3nt8_A           76 CAMEQQLQDAIQSC--------PSGFAGIQGVAQNTMSWSSSGGYPDPSVKIEPTLSGWWSGAKKNGVGPDNKYTGGGLF  147 (424)
T ss_dssp             HHHHHHHHHHCTTC--------CSSCCCCTTCEEEEEEEECTTCCSCGGGGHHHHHHHHHTHHHHHCCCTTCBCCCTTCH
T ss_pred             HHHHHHHHHHHhhC--------CCcCCCCCCceeeEEeccccCCcCCHHHHHHHHHHHHHHHHHHcCCcccccCCCcchH
Confidence            58999999999999        7888888889999986542  222344558999999999876                


Q ss_pred             hhhhhhhcccceEEEEEEEeCCCEEEEEEecCCCCCcCcccccCCCC
Q psy11882         64 HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNVRRS  110 (110)
Q Consensus        64 hftqmvW~~t~~vGCa~~~c~~~~~vVC~Y~P~GN~~g~~~~nV~~~  110 (110)
                      |||||||++|++||||++.|...+++||+|.|+||+.|+..+..++|
T Consensus       148 hfTqmvw~~t~~vGCa~~~c~~~~~~VC~Y~p~GN~~g~~~Y~~G~~  194 (424)
T 3nt8_A          148 AFSNMVYSETTKLGCAYKVCGTKLAVSCIYNGVGYITNQPMWETGQA  194 (424)
T ss_dssp             HHHHHHCTTCCEEEEEEEEETTEEEEEEEESSCCCSTTCBSSEESCC
T ss_pred             HHHHHHHHhcCeeceEEEEeCCcEEEEEEECCCCCcccccccccCCC
Confidence            99999999999999999999888999999999999999887776665

>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A

Probab=99.91  E-value=1.3e-24  Score=149.93  Aligned_cols=95  Identities=13%  Similarity=0.071  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeCCCCChHHHHHHHHHHHHhchh-hhhhhhhcccceEEEEE
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR-HFTQVVWKSSSKLGVGI   80 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~-hftqmvW~~t~~vGCa~   80 (110)
                      ++||+.||.||+ |        . .+...  .||||+...+...+....+.++|+.||+|.- |||||||++|++||||+
T Consensus        54 ~eLa~~Aq~~A~-C--------~-~~~~~--~GeNl~~~sg~~~~~~~~~~~av~~W~~E~~gHfTQmVW~~Tt~VGCa~  121 (206)
T 3s6s_A           54 CGLEEEARKEIK-L--------P-GYADL--HHRGVTRFSGDYEGSAISALKEILETFSADKNSMRQVVYPKATRFGCSG  121 (206)
T ss_dssp             HHHHHHHHHHHH-S--------T-THHHH--TTCEEEEEEEECSSCHHHHHHHHHHHHTTCHHHHHHHHCTTCCEEEEEE
T ss_pred             HHHHHHHHHhhc-C--------C-CCCCC--CCcEEEEecCCCCccchhHHHHHHHHHhhhhhhHHHHHHHhhceeeEEE
Confidence            589999999999 9        3 22211  2999964332221212224599999999943 99999999999999999


Q ss_pred             EEeC----C--CEEEEEEecCCCCCcCcccccCCCC
Q psy11882         81 ARKN----G--HILVVANYDPPGNYQGQYANNVRRS  110 (110)
Q Consensus        81 ~~c~----~--~~~vVC~Y~P~GN~~g~~~~nV~~~  110 (110)
                      +.|.    +  .+++||+|.|+|  .|+-.+..++|
T Consensus       122 ~~C~~~~~~~~~~~vVCnY~p~G--~g~~~Y~~G~p  155 (206)
T 3s6s_A          122 RLRRNKKTGMRRMDWVCVYDKKP--KDGESFEGGKP  155 (206)
T ss_dssp             EECC-------EEEEEEEESCCC--CTTCCCCCSCC
T ss_pred             EEecCcCCCCceEEEEEEeCCCC--CCCCCcccCCC
Confidence            9995    3  379999999999  88877777765

>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}

Probab=98.58  E-value=8.3e-08  Score=70.36  Aligned_cols=69  Identities=22%  Similarity=0.298  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCC----------------CCccceEEEEeCCCCChHHHHHHHHHHHHhchhhh
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPN----------------NKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHF   65 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~----------------~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~hf   65 (110)
                      +.|++.||.||+.+    +.++.+.|...                ..+||||+...   .+    +..+++.|++...|+
T Consensus       244 ~~L~~aAq~hA~dM----a~~~~fsH~~~~G~~~~~R~~~~G~~~~~~GENIA~G~---~s----~~~av~~WmnSpGHr  312 (339)
T 4ifa_A          244 QQTADVAIGHSKDM----KDNNYFSHDSPTLGTLGDRLQRGKVGFQLAGENIAAQH---SD----GVAALQGWLNSEGHR  312 (339)
T ss_dssp             HHHHHHHHHHHHHH----HHHTCCSSSBTTTBCHHHHHHHTTCCCSEEEEEEEESC---SS----HHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHHH----hhcCCeecCCCCCCCHHHHHHHcCCCcCceeEEEEEeC---CC----HHHHHHHHhCCHhHH
Confidence            57999999999998    65557777652                24799998654   25    889999999988899


Q ss_pred             hhhhhcccceEEEEEE
Q psy11882         66 TQVVWKSSSKLGVGIA   81 (110)
Q Consensus        66 tqmvW~~t~~vGCa~~   81 (110)
                      ++|+|.+.++||+|+.
T Consensus       313 ~NIL~~~~t~iGvGv~  328 (339)
T 4ifa_A          313 KNLLNEQFTGLGVGVY  328 (339)
T ss_dssp             HHHTCTTCCEEEEEEE
T ss_pred             HHHhCCCCCEEEEEEE
Confidence            9999999999999986

>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}

Probab=97.63  E-value=0.00016  Score=52.62  Aligned_cols=69  Identities=13%  Similarity=0.159  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCC---------------CCCccceEEEEeCCCCChHHHHHHHHHHHHhchhhhh
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRP---------------NNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHFT   66 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~---------------~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~hft   66 (110)
                      +.|++.|+.+|+.+    +.+....|++               ....||||+...   .+    +..++..|.+...|-.
T Consensus       229 ~~L~~aA~~ha~dm----a~~~~~h~~~~g~~~~~R~~~~g~~~~~~gENIA~g~---~~----~~~vv~~WmnSpgHR~  297 (323)
T 4h0a_A          229 SDLAHIASNNLYEA----TSNGSDSVEFTEDALRGQLDKNHVTYKTTAQNVGYAF---ND----VPTLIHSWMNSDIHRS  297 (323)
T ss_dssp             HHHHHHHHHHHHHH----TC------CCCHHHHHHHHHHTTCCCSEEEEEEEESC---CS----HHHHHHHHHTSHHHHH
T ss_pred             HhHHHHHHHHHHHH----hhCCCCCcCCCCCCHHHHHHHcCCCcCeeeeEEecCC---CC----HHHHHHHHHcCHHHHH
Confidence            57999999999998    5443332322               124689998643   25    8899999999988999


Q ss_pred             hhhhcccceEEEEEE
Q psy11882         67 QVVWKSSSKLGVGIA   81 (110)
Q Consensus        67 qmvW~~t~~vGCa~~   81 (110)
                      +|+..+-++||+|+.
T Consensus       298 NiL~~~~t~iGvGv~  312 (323)
T 4h0a_A          298 RLLNSKYDEMGGDVM  312 (323)
T ss_dssp             HHTCSSCCEEEEEEE
T ss_pred             HHcCCCCCEEEEEEE
Confidence            999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	110
d1rc9a1	164	d.111.1.1 (A:1-164) Cysteine-rich secretory protei	1e-15
d1qnxa_	209	d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jac	4e-15
d1cfea_	135	d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1	2e-12
d1smba_	149	d.111.1.1 (A:) Golgi-associated PR-1 protein {Huma	7e-12

>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]} Length = 164

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Cysteine-rich secretory protein (SteCRISP)
species: Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]

 Score = 66.1 bits (160), Expect = 1e-15
 Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 25/127 (19%)

Query: 2   AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE 61
            + A  A+ WA + I S       +     K GENI+M             + + +W+DE
Sbjct: 43  PEAADNAERWAYRCIES-HSSYESRVIEGIKCGENIYMSPYPM-----KWTDIIHAWHDE 96

Query: 62  ----------------IRHFTQVVWKSSSKLGVGIAR---KNGHILVVANYDPPGNYQGQ 102
                             H+TQ+VW  S ++G   A           V  Y P GN+ G+
Sbjct: 97  YKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGK 156

Query: 103 YANNVRR 109
            A     
Sbjct: 157 TATPYTS 163

>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]} Length = 209

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Insect allergen 5 (AG5)
species: Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]

 Score = 65.7 bits (159), Expect = 4e-15
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 25/122 (20%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
           ++A VAQ WA++           +     + G+N+ +        ++ VK  VK W DE+
Sbjct: 87  ELAYVAQVWANQ---CQYGHDTCRDVAKYQVGQNVALTGSTAAKYDDPVK-LVKMWEDEV 142

Query: 63  R-----------------HFTQVVWKSSSKLGVGIAR----KNGHILVVANYDPPGNYQG 101
           +                 H+TQ+VW ++ ++G G  +    K     +V NY P GN++ 
Sbjct: 143 KDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKN 202

Query: 102 QY 103
           + 
Sbjct: 203 EE 204

>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]} Length = 135

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Pathogenesis-related protein 1 (PR1)
species: Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]

 Score = 57.6 bits (138), Expect = 2e-12
 Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 21/115 (18%)

Query: 2   AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVK----- 56
           A +A  AQ +A+      A   +L H    +   N+  G G  FT   AV+  V      
Sbjct: 27  ANLASRAQNYANSR----AGDCNLIHSGAGE---NLAKG-GGDFTGRAAVQLWVSERPSY 78

Query: 57  -------SWYDEIRHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQY 103
                      + RH+TQVVW++S +LG G AR  NG   +  NYDP GN+ GQ 
Sbjct: 79  NYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQR 133

>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Golgi-associated PR-1 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 7e-12
 Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 23/124 (18%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
            + + AQ ++  L  +     H       + GEN+   S  +       K     WY EI
Sbjct: 31  NLNREAQQYSEALAST-RILKHSPESSRGQCGENLAWASYDQT-----GKEVADRWYSEI 84

Query: 63  R--------------HFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNY--QGQYAN 105
           +              HFT +VWK++ K+GVG A   +G   VVA Y P GN   +G +  
Sbjct: 85  KNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEE 144

Query: 106 NVRR 109
           NV  
Sbjct: 145 NVLP 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1smba_	149	Golgi-associated PR-1 protein {Human (Homo sapiens	99.97
d1cfea_	135	Pathogenesis-related protein 1 (PR1) {Tomato (Lyco	99.97
d1rc9a1	164	Cysteine-rich secretory protein (SteCRISP) {Chines	99.95
d1qnxa_	209	Insect allergen 5 (AG5) {Yellow jacket (Vespula vu	99.94

>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Golgi-associated PR-1 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.2e-32  Score=175.83  Aligned_cols=100  Identities=37%  Similarity=0.616  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCC---CCCccceEEEEeCCCCChHHHHHHHHHHHHhchh--------------h
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRP---NNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------H   64 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~---~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~--------------h   64 (110)
                      ++|++.||.||++|    +.+|.+.|++   ...+|||+++... ..+    +.++|+.|++|..              |
T Consensus        30 ~~La~~A~~~A~~~----a~~~~~~h~~~~~~~~~geni~~~~~-~~~----~~~~v~~W~~e~~~y~~~~~~~~~~~gh  100 (149)
T d1smba_          30 KNLNREAQQYSEAL----ASTRILKHSPESSRGQCGENLAWASY-DQT----GKEVADRWYSEIKNYNFQQPGFTSGTGH  100 (149)
T ss_dssp             HHHHHHHHHHHHHH----HHHCCCCCCHHHHTTSSEEEEEEESS-CCC----HHHHHHHHHGGGGGCCTTSCCCCGGGHH
T ss_pred             HHHHHHHHHHHHhh----cccccccccccccccccCceeeecCC-Ccc----HHHHHHHHHHHHhhcccCCCCcccccch
Confidence            58999999999999    7777888875   3468999987653 345    7889999999885              9


Q ss_pred             hhhhhhcccceEEEEEEEeCC-CEEEEEEecCCCCCcCc--ccccCCCC
Q psy11882         65 FTQVVWKSSSKLGVGIARKNG-HILVVANYDPPGNYQGQ--YANNVRRS  110 (110)
Q Consensus        65 ftqmvW~~t~~vGCa~~~c~~-~~~vVC~Y~P~GN~~g~--~~~nV~~~  110 (110)
                      ||||||++|++||||++.|.. ..++||+|+|+||+.|+  |++||+||
T Consensus       101 ftqmvw~~t~~vGCg~a~c~~~~~~~VC~Y~p~GN~~~~~~y~~nv~~p  149 (149)
T d1smba_         101 FTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVLPP  149 (149)
T ss_dssp             HHHHHCTTCCEEEEEEEECTTSCEEEEEEEESCCCCCSTTHHHHHSCCC
T ss_pred             hhheecCCceEeeEEEEEcCCCCEEEEEEeeCCCCcCCcccchhcCCCc
Confidence            999999999999999999976 58999999999999775  99999998

>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Pathogenesis-related protein 1 (PR1)
species: Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]

Probab=99.97  E-value=3.4e-31  Score=170.52  Aligned_cols=92  Identities=42%  Similarity=0.634  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeCCCCChHHHHHHHHHHHHhchh----------------hh
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR----------------HF   65 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~----------------hf   65 (110)
                      ++|++.||.||++|    +.++.+.|+   .+||||++.. ...+    +.++|+.||+|.+                ||
T Consensus        27 ~~La~~Aq~~A~~~----~~~~~~~~~---~~GeNi~~~~-~~~~----~~~av~~W~~E~~~y~~~~~~~~~~~~~ghf   94 (135)
T d1cfea_          27 ANLASRAQNYANSR----AGDCNLIHS---GAGENLAKGG-GDFT----GRAAVQLWVSERPSYNYATNQCVGGKKCRHY   94 (135)
T ss_dssp             SHHHHHHHHHHHHH----TTTCCSCSC---SSSBCCEECS-SSCC----HHHHHHHHHTTGGGEEGGGTEECSSSCCSSH
T ss_pred             HHHHHHHHHHHHHH----hhCCCcccC---ccccceeccC-CCCC----HHHHHHHHHhhccccccccccCCCCcccchh
Confidence            58999999999999    666666555   5799998755 3567    8999999999976                99


Q ss_pred             hhhhhcccceEEEEEEEeCC-CEEEEEEecCCCCCcCcccc
Q psy11882         66 TQVVWKSSSKLGVGIARKNG-HILVVANYDPPGNYQGQYAN  105 (110)
Q Consensus        66 tqmvW~~t~~vGCa~~~c~~-~~~vVC~Y~P~GN~~g~~~~  105 (110)
                      |||||++|++||||++.|.. ..+|||+|+|+||+.|++++
T Consensus        95 tQmvW~~t~~vGCa~~~c~~~~~~vVC~Y~P~GN~~g~~pY  135 (135)
T d1cfea_          95 TQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQRPY  135 (135)
T ss_dssp             HHHHCTTCCEEEEEEEECTTSSEEEEEECSSCCSCTTSCCC
T ss_pred             heeeehhheEeeEEEEEECCCCEEEEEEEeCCCCcCCcCCC
Confidence            99999999999999999976 58899999999999998753

>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Cysteine-rich secretory protein (SteCRISP)
species: Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]

Probab=99.95  E-value=5.2e-28  Score=159.66  Aligned_cols=93  Identities=32%  Similarity=0.605  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCC-------CCCccceEEEEeCCCCChHHHHHHHHHHHHhchh-----------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRP-------NNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR-----------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~-------~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~-----------   63 (110)
                      ++|++.||.||++|        .+.|+.       ...+|||++... ...+    +.++|+.||+|..           
T Consensus        43 ~~La~~A~~~a~~c--------~~~~~~~~~~~~~~~~~g~n~~~~~-~~~~----~~~~v~~W~~E~~~~~~~~~~~~~  109 (164)
T d1rc9a1          43 PEAADNAERWAYRC--------IESHSSYESRVIEGIKCGENIYMSP-YPMK----WTDIIHAWHDEYKDFKYGVGADPP  109 (164)
T ss_dssp             HHHHHHHHHHHTTT--------CCSCCCGGGGEETTEECEEEEEEES-SCCC----HHHHHHHHHGGGGGEETTTEESST
T ss_pred             HHHHHHHHHHHHHH--------hhccCCcccccccccccceEEEEec-CCCC----HHHHHHHHhhhhheeecCCCCCCC
Confidence            58999999999999        333333       346799987655 3456    8899999999876           


Q ss_pred             -----hhhhhhhcccceEEEEEEEeCC---CEEEEEEecCCCCCcCcccccC
Q psy11882         64 -----HFTQVVWKSSSKLGVGIARKNG---HILVVANYDPPGNYQGQYANNV  107 (110)
Q Consensus        64 -----hftqmvW~~t~~vGCa~~~c~~---~~~vVC~Y~P~GN~~g~~~~nV  107 (110)
                           |||||||++|++||||++.|.+   ..+|||+|+|+||+.|++..++
T Consensus       110 ~~~~ghftqmvW~~t~~vGCa~~~c~~~~~~~~vVC~Y~P~GN~~g~~~~~Y  161 (164)
T d1rc9a1         110 NAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGKTATPY  161 (164)
T ss_dssp             TCCCHHHHHHTCTTCCEEEEEEEECTTSSSSEEEEEEEESCCCCTTCTTCSS
T ss_pred             cchhhHHHHHhhhcccEEeEEEEEeCCCCceEEEEEEEcCCCccCCCcCCCc
Confidence                 9999999999999999999975   3789999999999999976443

>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Insect allergen 5 (AG5)
species: Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]

Probab=99.94  E-value=2.4e-26  Score=156.58  Aligned_cols=94  Identities=29%  Similarity=0.550  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHHHchhhhcCCCccccCC-----CCCccceEEEEeCC---CCChHHHHHHHHHHHHhchh----------
Q psy11882          2 AKVAKVAQAWASKLIGSIARGGHLQHRP-----NNKFGENIWMGSGY---KFTDEEAVKNAVKSWYDEIR----------   63 (110)
Q Consensus         2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~-----~~~~Gen~~~~~~~---~~~~~~~~~~~v~~W~~e~~----------   63 (110)
                      ++||..||.||++|        .+.|+.     ...+|||+++....   ..+    +.++|+.|++|..          
T Consensus        86 ~eLa~~A~~~a~~C--------~~~~~~~~~~~~~~~Gen~~~~~~~~~~~~~----~~~~v~~W~~E~~~~~~~~~~~~  153 (209)
T d1qnxa_          86 DELAYVAQVWANQC--------QYGHDTCRDVAKYQVGQNVALTGSTAAKYDD----PVKLVKMWEDEVKDYNPKKKFSG  153 (209)
T ss_dssp             HHHHHHHHHHHTTC--------CCSCCSCCCCSSSCCEEEEEEEEESSSCCCC----HHHHHHHHHGGGGGCCTTSCGGG
T ss_pred             HHHHHHHHHHHhhc--------ccCCCcccCCCCCCCcceeeecccCCcCccc----HHHHHHHHHHHhhhcCCCccccc
Confidence            58999999999999        444433     34679999865422   234    7889999999976          


Q ss_pred             -------hhhhhhhcccceEEEEEEEeCC----CEEEEEEecCCCCCcCcccccC
Q psy11882         64 -------HFTQVVWKSSSKLGVGIARKNG----HILVVANYDPPGNYQGQYANNV  107 (110)
Q Consensus        64 -------hftqmvW~~t~~vGCa~~~c~~----~~~vVC~Y~P~GN~~g~~~~nV  107 (110)
                             |||||||++|++||||++.|..    ..+|||+|+|+||+.|+..+.+
T Consensus       154 ~~~~~~ghftQmvw~~t~~VGCa~~~c~~~~~~~~~vVC~Y~p~GN~~g~~~Y~~  208 (209)
T d1qnxa_         154 NDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELYQT  208 (209)
T ss_dssp             SCHHHHHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEEESCCCCTTSCSSCB
T ss_pred             CCccccchhHHHhhhhhCEEeEEEEEEcCCCCCEEEEEEEECCCCCCCCCCCCcc
Confidence                   9999999999999999999853    3789999999999999876654