Psyllid ID: psy11885

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MVDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTDQETKPK
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEcccccccEEEEEEEcccEEEEEEccccEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccEEEccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEEccccccEEEEEEEccccEEEEEEccccEEEEEccccccccccccccccEEccccccccEEEEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEccccccccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEccccEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEEcccccEEEEEEccccEEEEEEEccccccEEEEEEEcccccccccccEEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEccccccccccc
Coil and Loop (DISEMBL)
mvdskteyslnsppedgitavkfapnsnqFLLASswdcnvslyditnnnlrlkyahsdpvldccfqdavhsfsggldctlkmfdfntqtetvigthdqpiraveysdevnciltgswdtsvkmwdprssrcvgnytqpdkvftmslcgekfvvgtagrKVCIWDLRNMGYIMQRRESSLKFQTRCIkcfpnkqgyvlSSIEGRAAveyldtgpemQKMKYAFKCHRikedgiekiypvnaisfhqeyntfatggsdgyvniWDGFnkkrlcqfhrydtgitslcfsydgnVLAIACSYnyeletppdpippnnifirhvtdqetkpk
Flexible Loop (DISEMBL)
mvdskteyslnsppedgITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETvigthdqpiraVEYSDEVNCILTgswdtsvkmwdpRSSRCVGNYTQPDKVFTMSLCGEkfvvgtagrkvcIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVtdqetkpk
Low Complexity Region (SEG)
MVDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETppdpippnniFIRHVTDQETKPK
Disordered region (IsUnstruct)
******************TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET*******NNIFIR**********
Disordered Region (DISOPRED)
MVDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYI****ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTD***KP*
Disordered Region (DISEMBL)
************PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTDQETKPK
Disordered Region (DISPRO)
***SKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHV********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTDQETKPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
Q9WVA3	326	Mitotic checkpoint protei	yes	N/A	0.975	0.978	0.666	1e-130
Q1JQB2	326	Mitotic checkpoint protei	yes	N/A	0.975	0.978	0.666	1e-130
O43684	328	Mitotic checkpoint protei	yes	N/A	0.975	0.972	0.666	1e-130
Q9YGY3	330	Mitotic checkpoint protei	N/A	N/A	0.975	0.966	0.666	1e-130
Q5RB58	328	Mitotic checkpoint protei	yes	N/A	0.975	0.972	0.663	1e-129
Q54DM1	331	Mitotic checkpoint protei	yes	N/A	0.957	0.945	0.445	3e-75
P40066	365	Nucleoporin GLE2 OS=Sacch	yes	N/A	0.990	0.887	0.35	6e-53
Q38942	349	Rae1-like protein At1g806	no	N/A	0.960	0.899	0.353	1e-50
Q7ZWF0	368	mRNA export factor OS=Dan	no	N/A	0.975	0.866	0.353	1e-50
P41838	352	Poly(A)+ RNA export prote	yes	N/A	0.984	0.914	0.327	2e-49

>sp|Q9WVA3|BUB3_MOUSE Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=2

 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 214/321 (66%), Positives = 257/321 (80%), Gaps = 2/321 (0%)

Query: 7   EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
           E+ LN PPEDGI++VKF+PN++QFLL SSWD +V LYD+  N++RLKY H+  VLDC F 
Sbjct: 6   EFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFY 65

Query: 67  DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
           D  H++SGGLD  LKM D NT  E ++GTHD PIR VEY  EVN ++TGSWD +VK+WDP
Sbjct: 66  DPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDP 125

Query: 127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
           R+    G ++QP+KV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct: 126 RTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 185

Query: 187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
           + FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+KE+ IE+IYPVNAISFH  
Sbjct: 186 RAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNI 245

Query: 247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPP 306
           +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL FS DG  LAIA SY YE++   
Sbjct: 246 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTE 305

Query: 307 DPIPPNNIFIRHVTDQETKPK 327
              P + IFIR VTD ETKPK
Sbjct: 306 H--PEDGIFIRQVTDAETKPK 324

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1 (By similarity). Regulates chromosome segregation during oocyte meiosis.
Mus musculus (taxid: 10090)

>sp|Q1JQB2|BUB3_BOVIN Mitotic checkpoint protein BUB3 OS=Bos taurus GN=BUB3 PE=2 SV=1

 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 214/321 (66%), Positives = 257/321 (80%), Gaps = 2/321 (0%)

Query: 7   EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
           E+ LN PPEDGI++VKF+PN++QFLL SSWD +V LYD+  N++RLKY H+  VLDC F 
Sbjct: 6   EFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFY 65

Query: 67  DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
           D  H++SGGLD  LKM D NT  E ++GTHD PIR VEY  EVN ++TGSWD +VK+WDP
Sbjct: 66  DPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDP 125

Query: 127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
           R+    G ++QP+KV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct: 126 RTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 185

Query: 187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
           + FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+KE+ IE+IYPVNAISFH  
Sbjct: 186 RAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNI 245

Query: 247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPP 306
           +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL FS DG  LAIA SY YE++   
Sbjct: 246 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTE 305

Query: 307 DPIPPNNIFIRHVTDQETKPK 327
              P + IFIR VTD ETKPK
Sbjct: 306 H--PEDGIFIRQVTDAETKPK 324

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. Regulates chromosome segregation during oocyte meiosis. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1.

Bos taurus (taxid: 9913)

>sp|O43684|BUB3_HUMAN Mitotic checkpoint protein BUB3 OS=Homo sapiens GN=BUB3 PE=1 SV=1

 Score =  464 bits (1195), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 214/321 (66%), Positives = 257/321 (80%), Gaps = 2/321 (0%)

Query: 7   EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
           E+ LN PPEDGI++VKF+PN++QFLL SSWD +V LYD+  N++RLKY H+  VLDC F 
Sbjct: 6   EFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFY 65

Query: 67  DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
           D  H++SGGLD  LKM D NT  E ++GTHD PIR VEY  EVN ++TGSWD +VK+WDP
Sbjct: 66  DPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDP 125

Query: 127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
           R+    G ++QP+KV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct: 126 RTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 185

Query: 187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
           + FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+KE+ IE+IYPVNAISFH  
Sbjct: 186 RAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNI 245

Query: 247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPP 306
           +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL FS DG  LAIA SY YE++   
Sbjct: 246 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTE 305

Query: 307 DPIPPNNIFIRHVTDQETKPK 327
              P + IFIR VTD ETKPK
Sbjct: 306 H--PEDGIFIRQVTDAETKPK 324

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. Regulates chromosome segregation during oocyte meiosis. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1.

Homo sapiens (taxid: 9606)

>sp|Q9YGY3|BUB3_XENLA Mitotic checkpoint protein BUB3 OS=Xenopus laevis GN=bub3 PE=1 SV=1

 Score =  464 bits (1193), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 214/321 (66%), Positives = 257/321 (80%), Gaps = 2/321 (0%)

Query: 7   EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
           E+ LN  PEDGI+AVKF+PN++QFLL SSWD +V LYD+  N +RLKY H+ PVLDC F 
Sbjct: 12  EFKLNQAPEDGISAVKFSPNTSQFLLVSSWDSSVRLYDVPANTMRLKYQHAGPVLDCAFY 71

Query: 67  DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
           D  H++SGGLD  LKM D NT  +TV+G+HD PIR VEY  EVN I+TGSWD +VK+WDP
Sbjct: 72  DPTHAWSGGLDHQLKMHDLNTDGDTVVGSHDAPIRCVEYCPEVNVIVTGSWDQTVKLWDP 131

Query: 127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
           R+    G ++QPDKV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct: 132 RTPCNAGTFSQPDKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 191

Query: 187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
           + FPNKQGYVLSSIEGR AVEYLD   E+QK KYAFKCHR+KE+ IE+IYPVNA+SFH  
Sbjct: 192 RAFPNKQGYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRLKENNIEQIYPVNAVSFHNL 251

Query: 247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPP 306
           +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL FS DG+ LAIA SY YE++   
Sbjct: 252 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGSTLAIAASYMYEMDDID 311

Query: 307 DPIPPNNIFIRHVTDQETKPK 327
              P + I+IR VTD ETKPK
Sbjct: 312 H--PEDAIYIRQVTDAETKPK 330

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Plays a role in the kinetochore-mediated mitotic checkpoint, which delays anaphase onset until all chromosomes have attached properly to the mitotic spindle. Required to establish and maintain spindle checkpoint arrest in eggs.

Xenopus laevis (taxid: 8355)

>sp|Q5RB58|BUB3_PONAB Mitotic checkpoint protein BUB3 OS=Pongo abelii GN=BUB3 PE=2 SV=1

 Score =  460 bits (1184), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 213/321 (66%), Positives = 255/321 (79%), Gaps = 2/321 (0%)

Query: 7   EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
           E+ LN PPEDGI++VKF+PN++QFLL SSWD +V LYD+  N++RLKY H+  VLDC F 
Sbjct: 6   EFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFY 65

Query: 67  DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
           D  H++SGGLD  LKM D NT  E ++GTHD PIR VEY  EVN + TGSWD +VK+WDP
Sbjct: 66  DPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMATGSWDQTVKLWDP 125

Query: 127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
           R+    G ++QP+KV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct: 126 RTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 185

Query: 187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
           + F NKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+KE+ IE+IYPVNAISFH  
Sbjct: 186 RAFLNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNI 245

Query: 247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPP 306
           +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL FS DG  LAIA SY YE++   
Sbjct: 246 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTE 305

Query: 307 DPIPPNNIFIRHVTDQETKPK 327
              P + IFIR VTD ETKPK
Sbjct: 306 H--PEDGIFIRQVTDAETKPK 324

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. Regulates chromosome segregation during oocyte meiosis. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1.

Pongo abelii (taxid: 9601)

>sp|Q54DM1|BUB3_DICDI Mitotic checkpoint protein bub3 OS=Dictyostelium discoideum GN=bub3 PE=3 SV=1

 Score =  282 bits (721), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 142/319 (44%), Positives = 199/319 (62%), Gaps = 6/319 (1%)

Query: 8   YSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQD 67
           Y L  PP DGI++V F PNS   LL +SWD  V  YD  NN  + +Y H  PV+D CF +
Sbjct: 10  YELRLPPSDGISSVNFCPNSVN-LLVTSWDSTVRCYDTQNNVQKWQYNHKGPVMDGCFPE 68

Query: 68  AVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR 127
               FSG +  ++K +D     E  +G+H+  +R+V Y+ +   + TG WD  +K+WD R
Sbjct: 69  KNKVFSGDVFGSVKHYDPVAGVEKEVGSHEDGVRSVVYNSDTQQLFTGGWDQQLKLWDIR 128

Query: 128 SSRC-VGNYTQPDKVFTM--SLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTR 184
           S +  + N+    K+FTM  S      V+GTA + V I+D R M   +Q+RESS+K+QTR
Sbjct: 129 SDKMEISNHDLQSKIFTMDVSPISNMLVIGTADKYVTIYDTRQMETHLQKRESSIKYQTR 188

Query: 185 CIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH 244
           CI+ F + +GY L+S+EGR A+EY D  P +Q  KYAFKCHR+ E G++ +YPVN I+F+
Sbjct: 189 CIRTFTDGKGYALASVEGRIAMEYFDPSPAVQSKKYAFKCHRLTESGVDVVYPVNCIAFN 248

Query: 245 QEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET 304
             Y TFATGG D  V  WDG N+KRL     Y T I+S+ F+ DGN+LA+A SY +E E 
Sbjct: 249 PHYGTFATGGCDKNVFFWDGANRKRLHALKTYPTSISSMSFNTDGNILAVASSYTFE-EG 307

Query: 305 PPDPIPPNNIFIRHVTDQE 323
             D  PP+ IFI ++  ++
Sbjct: 308 EKDH-PPDQIFIHNILSEK 325

Involved in cell cycle checkpoint enforcement.

Dictyostelium discoideum (taxid: 44689)

>sp|P40066|GLE2_YEAST Nucleoporin GLE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLE2 PE=1 SV=1

 Score =  207 bits (528), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 174/340 (51%), Gaps = 16/340 (4%)

Query: 3   DSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN--NLRLKYAHSDPV 60
           D   +  +NSP ED I+ + F+P  +    ASSWD  V ++D+ N     R ++  S PV
Sbjct: 24  DLANDIVINSPAEDSISDIAFSPQQDFMFSASSWDGKVRIWDVQNGVPQGRAQHESSSPV 83

Query: 61  LDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEY----SDEVNCILTG 115
           L   +  D     SGG D  LK++D  +     IG H  PI+ + +         CI+TG
Sbjct: 84  LCTRWSNDGTKVASGGCDNALKLYDIASGQTQQIGMHSAPIKVLRFVQCGPSNTECIVTG 143

Query: 116 SWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRR 175
           SWD ++K WD R  + V     P++V++M       VV TA R + I +L N   I +  
Sbjct: 144 SWDKTIKYWDMRQPQPVSTVMMPERVYSMDNKQSLLVVATAERHIAIINLANPTTIFKAT 203

Query: 176 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK------- 228
            S LK+QTRC+ C+    GY + S+EGR ++ Y+D G + +K  ++FKCHR         
Sbjct: 204 TSPLKWQTRCVACYNEADGYAIGSVEGRCSIRYIDDGMQ-KKSGFSFKCHRQTNPNRAPG 262

Query: 229 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 288
            +G   +YPVN+I+FH  Y TF T G DG  N WD   + RL  +      I    F+ +
Sbjct: 263 SNGQSLVYPVNSIAFHPLYGTFVTAGGDGTFNFWDKNQRHRLKGYPTLQASIPVCSFNRN 322

Query: 289 GNVLAIACSYNY-ELETPPDPIPPNNIFIRHVTDQETKPK 327
           G+V A A SY++ +      P  PN I +   TD+E K K
Sbjct: 323 GSVFAYALSYDWHQGHMGNRPDYPNVIRLHATTDEEVKEK 362

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. It is specifically important for nuclear mRNA export.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2

 Score =  200 bits (509), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 179/331 (54%), Gaps = 17/331 (5%)

Query: 7   EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA------HSDPV 60
            Y +   P D I+++ F+P ++  L+A+SWD  V  ++I+ +   L  A      H  PV
Sbjct: 17  SYEVTPSPADSISSLSFSPRAD-ILVATSWDNQVRCWEISRSGASLASAPKASISHDQPV 75

Query: 61  LDCCFQD-AVHSFSGGLDCTLKMFDFNTQTETV-IGTHDQPIRAVEYSDEVNCILTGSWD 118
           L   ++D     FSGG D   KM+   +  + V +  H+ PI A+ +   +N + TGSWD
Sbjct: 76  LCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSWD 135

Query: 119 TSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESS 178
            ++K WD R    V     PDK +T+S+     VVGTA R + +++L+N     +R +S 
Sbjct: 136 KTLKYWDTRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVFNLQNPQTEFKRIQSP 195

Query: 179 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV 238
           LK+QTRC+  FP++QG+++ SIEGR  V +LD     Q   + FKCHR   D    IY V
Sbjct: 196 LKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLDD--SQQSKNFTFKCHRDGND----IYSV 249

Query: 239 NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY 298
           N+++FH  + TFAT GSDG  N WD  +K+RL    R +  I    F++DG++ A A  Y
Sbjct: 250 NSLNFHPVHGTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNHDGSIYAYAACY 309

Query: 299 NYE--LETPPDPIPPNNIFIRHVTDQETKPK 327
           ++    E        ++IF+    + E K K
Sbjct: 310 DWSKGAENHNPATAKSSIFLHLPQESEVKAK 340

Arabidopsis thaliana (taxid: 3702)

>sp|Q7ZWF0|RAE1L_DANRE mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2

 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 180/337 (53%), Gaps = 18/337 (5%)

Query: 7   EYSLNSPPEDGITAVKFAPNS--NQFLLASSWDCNVSLYDITNNNLRLKYA---HSDPVL 61
           +  + SPP+D I+ + F+P +    FL+  SW  +V  +++ +N   +  A   H+ PVL
Sbjct: 31  DVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTVPKAQQMHTGPVL 90

Query: 62  DCCFQD-AVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVN--CILTGSWD 118
           D C+ D     F+   D T KM+D N+     I  H+ PIR + +    N  CI+TGSWD
Sbjct: 91  DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHEGPIRTIHWIKAPNYSCIMTGSWD 150

Query: 119 TSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESS 178
            ++K WD RS   + +   P++ +   +     VV TA R + ++ L N     +R ES 
Sbjct: 151 KTLKFWDTRSPNPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIESP 210

Query: 179 LKFQTRCIKCFPNKQ----GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI-- 232
           LK Q RC+  F +KQ    G+ L SIEGR A+ Y++  P   K  + FKCHR        
Sbjct: 211 LKHQHRCVAIFKDKQSKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSNGTNTAT 269

Query: 233 -EKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNV 291
            + IY VNAISFH  + T AT GSDG  + WD   + +L    + D  IT+ CF+++GN+
Sbjct: 270 PQDIYAVNAISFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPITACCFNHNGNI 329

Query: 292 LAIACSYNY-ELETPPDPIPPNNIFIRHVTDQETKPK 327
            A A SY++ +     +P   N IF+R+   +E KP+
Sbjct: 330 FAYASSYDWSKGHEYYNPQKKNYIFLRNAA-EELKPR 365

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Danio rerio (taxid: 7955)

>sp|P41838|RAE1_SCHPO Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rae1 PE=1 SV=1

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 171/333 (51%), Gaps = 11/333 (3%)

Query: 3   DSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK---YAHSDP 59
           D K +  +  PPED I+ + F+P + ++L ASSWD  V +Y++      +    Y H  P
Sbjct: 18  DLKKDVEVAQPPEDSISDLAFSPQA-EYLAASSWDSKVRIYEVQATGQSIGKALYEHQGP 76

Query: 60  VLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNC---ILTG 115
           VL   + +D     SG +D + K+FD  T     +  HD  +R V + + +     + TG
Sbjct: 77  VLSVNWSRDGTKVASGSVDKSAKVFDIQTGQNQQVAAHDDAVRCVRFVEAMGTSPILATG 136

Query: 116 SWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRR 175
           SWD ++K WD R S  +   + P++V+ M        V TA R +C+ +L     I +  
Sbjct: 137 SWDKTLKYWDLRQSTPIATVSLPERVYAMDCVHPLLTVATAERNICVINLSEPTKIFKLA 196

Query: 176 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI 235
            S LKFQTR + CF    GY + S+EGR A++ +D     Q   ++F+CHR +      +
Sbjct: 197 MSPLKFQTRSLACFIKGDGYAIGSVEGRCAIQNIDEKNASQ--NFSFRCHRNQAGNSADV 254

Query: 236 YPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
           Y VN+I+FH +Y TF+T GSDG  + WD  + +RL  +      I+   F+  G++ A A
Sbjct: 255 YSVNSIAFHPQYGTFSTAGSDGTFSFWDKDSHQRLKSYPNVGGTISCSTFNRTGDIFAYA 314

Query: 296 CSYNYELE-TPPDPIPPNNIFIRHVTDQETKPK 327
            SY++    T  +   PN I +  V   E KP+
Sbjct: 315 ISYDWSKGYTFNNAQLPNKIMLHPVPQDEIKPR 347

Required for mitotic cell growth as well as for spore germination. Functions in cell cycle progression through trafficking of proteins required for mitosis. Has a role in the mRNA export process.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
193643642	328	PREDICTED: mitotic checkpoint protein BU	0.993	0.990	0.729	1e-144
91091890	331	PREDICTED: similar to BUB3 budding uninh	0.996	0.984	0.717	1e-142
405953484	326	Mitotic checkpoint protein BUB3 [Crassos	0.993	0.996	0.709	1e-140
187610693	326	mitotic checkpoint protein [Penaeus mono	0.996	1.0	0.703	1e-139
332027727	326	Mitotic checkpoint protein BUB3 [Acromyr	0.996	1.0	0.696	1e-137
156537448	326	PREDICTED: mitotic checkpoint protein BU	0.996	1.0	0.696	1e-136
66549453	326	PREDICTED: mitotic checkpoint protein BU	0.996	1.0	0.693	1e-136
340709324	326	PREDICTED: mitotic checkpoint protein BU	0.996	1.0	0.693	1e-136
443718958	328	hypothetical protein CAPTEDRAFT_21337 [C	0.978	0.975	0.688	1e-136
383861126	357	PREDICTED: mitotic checkpoint protein BU	0.996	0.913	0.693	1e-136

>gi|193643642|ref|XP_001947199.1| PREDICTED: mitotic checkpoint protein BUB3-like [Acyrthosiphon pisum]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 237/325 (72%), Positives = 276/325 (84%)

Query: 3   DSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLD 62
           +S++E+ L +PPEDGI++VKF P+S+QFLL SSWDC+V LYD+  N++R KY H  PVLD
Sbjct: 4   ESRSEFRLKNPPEDGISSVKFGPSSSQFLLVSSWDCSVRLYDVQANSMRTKYTHDRPVLD 63

Query: 63  CCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVK 122
             FQDAVHSFSGGLD  LKM+D N+ +E+V+G+HD  +R VEYS+EVN +L+G WD +VK
Sbjct: 64  VSFQDAVHSFSGGLDNKLKMYDLNSNSESVLGSHDNAVRCVEYSNEVNVVLSGGWDGNVK 123

Query: 123 MWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQ 182
           MWD RSS+CVG   QPDKVFTMS  GEK VVGTAGRKV +WDLRN  YIMQRRES+LKFQ
Sbjct: 124 MWDTRSSQCVGTLPQPDKVFTMSNVGEKLVVGTAGRKVFVWDLRNTAYIMQRRESNLKFQ 183

Query: 183 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS 242
           TRCI+C PNKQGYVLSSIEGR AVEY DT PE+QK KYAFKCHRIK++ IE IYPVNAIS
Sbjct: 184 TRCIRCSPNKQGYVLSSIEGRVAVEYFDTAPEIQKKKYAFKCHRIKDNDIECIYPVNAIS 243

Query: 243 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYEL 302
           FHQ +NTFATGGSDGYVNIWDGFNKKRLCQFHRY+TGITSLCFS+DG+ LAI  SY YE 
Sbjct: 244 FHQVFNTFATGGSDGYVNIWDGFNKKRLCQFHRYNTGITSLCFSHDGSSLAIGSSYMYEQ 303

Query: 303 ETPPDPIPPNNIFIRHVTDQETKPK 327
           +  PDPIP NN++IR+VTDQETKPK
Sbjct: 304 DVHPDPIPENNVYIRYVTDQETKPK 328

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091890|ref|XP_970295.1| PREDICTED: similar to BUB3 budding uninhibited by benzimidazoles 3 [Tribolium castaneum] gi|270001257|gb|EEZ97704.1| budding uninhibited by benzimidazoles 3 [Tribolium castaneum]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 234/326 (71%), Positives = 272/326 (83%)

Query: 2   VDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVL 61
           + S+TEY + SPPED I++VKF PN+NQFLL SSWD  V LYD+T NNLR KYAH  PVL
Sbjct: 1   MKSQTEYKVKSPPEDAISSVKFGPNTNQFLLVSSWDGTVRLYDVTTNNLRHKYAHDAPVL 60

Query: 62  DCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSV 121
           DCCF DAVHS+SGGLD TLK FDFNT TE  +G H   I+ VEY  EVN ILTGSWD  +
Sbjct: 61  DCCFTDAVHSYSGGLDNTLKSFDFNTTTENTVGAHANAIKCVEYCSEVNGILTGSWDHHI 120

Query: 122 KMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKF 181
           K+WDPR+  C G+Y Q +KV+T+S+CGEK VVGTAGRK+ +WD+RNM Y +Q+RES+LK+
Sbjct: 121 KLWDPRTPLCSGSYNQGEKVYTISVCGEKLVVGTAGRKILVWDIRNMSYTLQKRESNLKY 180

Query: 182 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI 241
           QTR I+CFPNKQG+VLSSIEGR AVEYLDT PE+QK KYAFKCHRIKEDG+EKIYPVNAI
Sbjct: 181 QTRAIRCFPNKQGFVLSSIEGRVAVEYLDTNPEIQKKKYAFKCHRIKEDGMEKIYPVNAI 240

Query: 242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE 301
           SFH  +NTFATGGSDGYVNIWDGFNKKRLCQFH+Y T ITSL FS++G+VLAIACSY  E
Sbjct: 241 SFHPTHNTFATGGSDGYVNIWDGFNKKRLCQFHQYHTSITSLSFSHNGSVLAIACSYFLE 300

Query: 302 LETPPDPIPPNNIFIRHVTDQETKPK 327
            E PP+P+P + I+IR VTDQETKPK
Sbjct: 301 EENPPNPLPEDAIYIRAVTDQETKPK 326

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405953484|gb|EKC21138.1| Mitotic checkpoint protein BUB3 [Crassostrea gigas]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 232/327 (70%), Positives = 277/327 (84%), Gaps = 2/327 (0%)

Query: 1   MVDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPV 60
           M ++  E+ L + PEDGI+AVKF   +NQFLLASSWD  V LYD+ +NNLR+KY+HS+PV
Sbjct: 1   MAETPNEFKLKNAPEDGISAVKFG-TTNQFLLASSWDQTVRLYDVISNNLRIKYSHSEPV 59

Query: 61  LDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTS 120
           LDCCF DAVHS+SGGLDCTLKMFDFNT TE  +G HD PIR VEY  EVN I+TGSWD++
Sbjct: 60  LDCCFYDAVHSYSGGLDCTLKMFDFNTSTEQNVGQHDDPIRCVEYCPEVNVIITGSWDST 119

Query: 121 VKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK 180
           VK+WDPR+    G+++QPDKV+TMS+CG++ VVGTAGR++ +WDLRNMGY+ QRRESSLK
Sbjct: 120 VKLWDPRAPCAAGSFSQPDKVYTMSVCGDRLVVGTAGRRILVWDLRNMGYVQQRRESSLK 179

Query: 181 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA 240
           +QTRCI+CFPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHRIKE+G+EKIYPVNA
Sbjct: 180 YQTRCIRCFPNKQGYVLSSIEGRVAVEYLDPSPEVQKRKYAFKCHRIKENGVEKIYPVNA 239

Query: 241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY 300
           I+FH  +NTFA+GGSDG+VNIWDGFNKKRLCQFHRY  GI SL FS DG VLAIA SY Y
Sbjct: 240 IAFHTHHNTFASGGSDGFVNIWDGFNKKRLCQFHRYPAGIASLAFSPDGAVLAIASSYMY 299

Query: 301 ELETPPDPIPPNNIFIRHVTDQETKPK 327
           E + P +P+  + I+IR+V+DQETKPK
Sbjct: 300 ENDEPIEPV-EDVIYIRNVSDQETKPK 325

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|187610693|gb|ACD13595.1| mitotic checkpoint protein [Penaeus monodon]

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 230/327 (70%), Positives = 271/327 (82%), Gaps = 1/327 (0%)

Query: 1   MVDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPV 60
           M +S+ E+ L + P D I +VKF P+S+QFLL +SWD +V LYD+ NNN+RL+Y H+ PV
Sbjct: 1   MSESRMEFRLKNTPSDCIQSVKFGPSSSQFLLVASWDKSVRLYDVVNNNMRLQYQHTGPV 60

Query: 61  LDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTS 120
           LDCCFQDAVH++SGGLD  LK FD NT TE+V+G+HD PIR VE+  EVN ++TG+WD++
Sbjct: 61  LDCCFQDAVHAYSGGLDGQLKTFDLNTNTESVVGSHDAPIRCVEFCPEVNVVITGAWDSN 120

Query: 121 VKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK 180
           +K+WDPR  R  G + QP+KV+TM L GEK VVGT+ RKV +WDLRNMG+  QRRESSLK
Sbjct: 121 IKLWDPRGPREAGTFQQPNKVYTMGLGGEKLVVGTSNRKVMVWDLRNMGFAQQRRESSLK 180

Query: 181 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA 240
           +QTRCI+CFPNKQGYV+SSIEGR AVEYLD  PE+QK KYAFKCHR+KEDGIEKI+PVNA
Sbjct: 181 YQTRCIQCFPNKQGYVVSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKEDGIEKIFPVNA 240

Query: 241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY 300
           ISFH  YNTFATGGSDGYVNIWDGFNKKRLCQFHRY T I+SLCFS DGN LAIACSY Y
Sbjct: 241 ISFHNGYNTFATGGSDGYVNIWDGFNKKRLCQFHRYPTSISSLCFSNDGNTLAIACSYMY 300

Query: 301 ELETPPDPIPPNNIFIRHVTDQETKPK 327
           E E   DP+P + IFIR VTDQETKPK
Sbjct: 301 EQEE-IDPMPEDCIFIRRVTDQETKPK 326

Source: Penaeus monodon

Species: Penaeus monodon

Genus: Penaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027727|gb|EGI67795.1| Mitotic checkpoint protein BUB3 [Acromyrmex echinatior]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 227/326 (69%), Positives = 261/326 (80%)

Query: 2   VDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVL 61
           ++S+TE+ + SPP D I+AV+F PNS QFLL SSWD  V LYDI  N +RLKY H  PVL
Sbjct: 1   MESRTEFKIKSPPTDAISAVEFGPNSTQFLLVSSWDSTVRLYDIHANTMRLKYNHDLPVL 60

Query: 62  DCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSV 121
           D  FQDAVH++SGGL  TLKM+D N+ TET++GTHD+PIR +EY   VN ILTG WD +V
Sbjct: 61  DVAFQDAVHAYSGGLGNTLKMYDINSNTETIMGTHDKPIRKIEYCAAVNAILTGGWDAAV 120

Query: 122 KMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKF 181
           K+WDPRS  CVG+Y QPD V  +S+CG+KFVVGTA RKVCIWDLRNM  + QRRESSLK+
Sbjct: 121 KLWDPRSPTCVGSYLQPDVVLALSVCGDKFVVGTAKRKVCIWDLRNMAGMFQRRESSLKY 180

Query: 182 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI 241
           QTRCIK FPN+QGYVLSSIEGR AVEYLDT PE QK KYAFKCHRIKE+ +E IYPVNAI
Sbjct: 181 QTRCIKGFPNEQGYVLSSIEGRVAVEYLDTMPEAQKKKYAFKCHRIKENNVEHIYPVNAI 240

Query: 242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE 301
           SFH  YNTFATGGSDGYVNIWDGFNKKRLCQFHRY+ G+ +L FS+DG+VLAI  SY  E
Sbjct: 241 SFHSAYNTFATGGSDGYVNIWDGFNKKRLCQFHRYNAGVAALSFSHDGSVLAIGVSYLNE 300

Query: 302 LETPPDPIPPNNIFIRHVTDQETKPK 327
            E PP       I+IR+V DQETKPK
Sbjct: 301 AEIPPGGSDEREIYIRYVNDQETKPK 326

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537448|ref|XP_001607033.1| PREDICTED: mitotic checkpoint protein BUB3-like [Nasonia vitripennis]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 227/326 (69%), Positives = 260/326 (79%)

Query: 2   VDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVL 61
           ++S+TE+ L +PP D I+AV+F PNS QFLL SSWD  V LYDI  N +RLKY H  PVL
Sbjct: 1   MESRTEFKLKNPPTDAISAVEFGPNSTQFLLVSSWDSTVRLYDIQTNTMRLKYNHDLPVL 60

Query: 62  DCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSV 121
           D  FQDAVH++SGGL  TLKM+D NT TETV+GTH++PIR +EY   VN ILTG WD +V
Sbjct: 61  DVAFQDAVHAYSGGLGNTLKMYDINTNTETVMGTHEEPIRKIEYCGAVNAILTGGWDAAV 120

Query: 122 KMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKF 181
           K+WDPRS  CVG+Y QPD V  +S+CG+KFVVGTA RKVCIWDLRNM  + QRRESSLK+
Sbjct: 121 KLWDPRSPTCVGSYLQPDVVLALSVCGDKFVVGTAKRKVCIWDLRNMAGMFQRRESSLKY 180

Query: 182 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI 241
           QTRCIK FPN+QGYVLSSIEGR AVEYLDT PE QK KYAFKCHRIKE+ +E IYPVNAI
Sbjct: 181 QTRCIKGFPNEQGYVLSSIEGRVAVEYLDTTPEAQKKKYAFKCHRIKENNVEHIYPVNAI 240

Query: 242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE 301
           SFH  YNTFATGGSDGYVNIWDGFNKKRLCQFHRY+ G+ +L FS DG+VLAI  SY  E
Sbjct: 241 SFHSGYNTFATGGSDGYVNIWDGFNKKRLCQFHRYNAGVAALSFSQDGSVLAIGVSYLNE 300

Query: 302 LETPPDPIPPNNIFIRHVTDQETKPK 327
            E PP       ++IR+V DQETKPK
Sbjct: 301 AEIPPGGNDEREVYIRYVNDQETKPK 326

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66549453|ref|XP_393536.2| PREDICTED: mitotic checkpoint protein BUB3 [Apis mellifera] gi|380023328|ref|XP_003695475.1| PREDICTED: mitotic checkpoint protein BUB3-like [Apis florea]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 226/326 (69%), Positives = 261/326 (80%)

Query: 2   VDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVL 61
           ++S+TE+ + SPP D I+AV+F  NS QFLL SSWD  V LYDI  N +RLKY H  PVL
Sbjct: 1   MESRTEFKIKSPPTDAISAVEFGRNSTQFLLVSSWDSTVRLYDIHTNTMRLKYNHDLPVL 60

Query: 62  DCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSV 121
           D  FQDAVH++SGGL  TLKM+D N+ TE+V+GTHD+PIR +EYS  VN ILTG WD +V
Sbjct: 61  DVAFQDAVHAYSGGLGNTLKMYDINSNTESVMGTHDKPIRKIEYSAAVNAILTGGWDAAV 120

Query: 122 KMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKF 181
           K+WDPR+  CVG+Y QPD V  +S+CG+KFVVGTA RKVCIWDLRNM  + QRRESSLK+
Sbjct: 121 KLWDPRTPTCVGSYLQPDVVLALSVCGDKFVVGTAKRKVCIWDLRNMAGMFQRRESSLKY 180

Query: 182 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI 241
           QTRCIK FPN+QGYVLSSIEGR AVEYLDT PE QK KYAFKCHRIKE+ +E IYPVNAI
Sbjct: 181 QTRCIKGFPNEQGYVLSSIEGRVAVEYLDTTPEAQKKKYAFKCHRIKENNVEHIYPVNAI 240

Query: 242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE 301
           SFH  YNTFATGGSDGYVNIWDGFNKKRLCQFHRY+ G+ +L FS+DG+VLAI  SY  E
Sbjct: 241 SFHSTYNTFATGGSDGYVNIWDGFNKKRLCQFHRYNAGVAALSFSHDGSVLAIGVSYLNE 300

Query: 302 LETPPDPIPPNNIFIRHVTDQETKPK 327
            E PP       I+IR+V DQETKPK
Sbjct: 301 AEIPPGGNDEREIYIRYVNDQETKPK 326

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709324|ref|XP_003393260.1| PREDICTED: mitotic checkpoint protein BUB3-like [Bombus terrestris] gi|350425078|ref|XP_003494004.1| PREDICTED: mitotic checkpoint protein BUB3-like [Bombus impatiens]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 226/326 (69%), Positives = 261/326 (80%)

Query: 2   VDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVL 61
           ++S+TE+ + SPP D I+AV+F PNS QFLL SSWD  V LYDI  N +RLKY H  PVL
Sbjct: 1   MESRTEFKIKSPPTDAISAVEFGPNSTQFLLVSSWDSTVRLYDIHANTMRLKYNHDLPVL 60

Query: 62  DCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSV 121
           D  FQDAVH++SGGL  TLKM+D N+ TE+V+GTHD+PIR +EY   VN ILTG WD +V
Sbjct: 61  DVAFQDAVHAYSGGLGNTLKMYDINSNTESVMGTHDKPIRKIEYCAAVNAILTGGWDAAV 120

Query: 122 KMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKF 181
           K+WDPR+  CVG+Y QPD V  +S+CG+KFVVGTA RKVCIWDLRNM  + QRRESSLK+
Sbjct: 121 KLWDPRTPTCVGSYLQPDVVLALSVCGDKFVVGTAKRKVCIWDLRNMAGMFQRRESSLKY 180

Query: 182 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI 241
           QTRCIK FPN+QGYVLSSIEGR AVEYLDT PE QK KYAFKCHRIKE+ +E IYPVNAI
Sbjct: 181 QTRCIKGFPNEQGYVLSSIEGRVAVEYLDTTPEAQKKKYAFKCHRIKENNVEHIYPVNAI 240

Query: 242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE 301
           SFH  YNTFATGGSDGYVNIWDGFNKKRLCQFHRY+ G+ +L FS+DG+VLAI  SY  E
Sbjct: 241 SFHSTYNTFATGGSDGYVNIWDGFNKKRLCQFHRYNAGVAALSFSHDGSVLAIGVSYLNE 300

Query: 302 LETPPDPIPPNNIFIRHVTDQETKPK 327
            E PP       I+IR+V DQETKPK
Sbjct: 301 AEIPPGGNDEREIYIRYVNDQETKPK 326

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443718958|gb|ELU09330.1| hypothetical protein CAPTEDRAFT_21337 [Capitella teleta]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 221/321 (68%), Positives = 268/321 (83%), Gaps = 1/321 (0%)

Query: 7   EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
           E  LN+PP+DGI+A+KF P S+QFLL SSWDC V L+D++ N +R+KY HS  VLDCCFQ
Sbjct: 9   ESKLNNPPDDGISALKFGPGSSQFLLVSSWDCTVRLFDVSTNFMRMKYNHSAAVLDCCFQ 68

Query: 67  DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
           D VH++SGGLD TLK +DFNT +ET +G+HD  IR VEY  EVN ++TGSWD++VK+WDP
Sbjct: 69  DNVHAYSGGLDKTLKAYDFNTNSETQVGSHDSAIRCVEYCPEVNVVVTGSWDSTVKLWDP 128

Query: 127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
           R+   VG Y+QPDKV+TM++CG+K +VGTAGRKV +WDLRNMG++ QRRESSLK+QTRCI
Sbjct: 129 RAPCSVGTYSQPDKVYTMAMCGDKLLVGTAGRKVLVWDLRNMGFVQQRRESSLKYQTRCI 188

Query: 187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
           + FPNKQGYVLS+IEGR AVEYLD   E+QK KYAFKCHRIKEDG+EKIYPVNAI+FH +
Sbjct: 189 RAFPNKQGYVLSAIEGRVAVEYLDPSAEVQKKKYAFKCHRIKEDGVEKIYPVNAIAFHSQ 248

Query: 247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPP 306
           YNTFATGGSDGYVNIWDGFNKKRLCQ HRY + I +L FS+DG +LAIA SY YE +   
Sbjct: 249 YNTFATGGSDGYVNIWDGFNKKRLCQLHRYPSSIAALSFSHDGQMLAIASSYMYEQDEMA 308

Query: 307 DPIPPNNIFIRHVTDQETKPK 327
           +  PP+ I+IR V+DQETKPK
Sbjct: 309 N-TPPDTIYIRRVSDQETKPK 328

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|383861126|ref|XP_003706037.1| PREDICTED: mitotic checkpoint protein BUB3-like [Megachile rotundata]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 226/326 (69%), Positives = 261/326 (80%)

Query: 2   VDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVL 61
           ++S+TE+ + SPP D I+AV+F PNS QFLL SSWD  V LYDI  N +RLKY H  PVL
Sbjct: 32  MESRTEFKIKSPPTDAISAVEFGPNSTQFLLVSSWDSTVRLYDIHANTMRLKYNHDLPVL 91

Query: 62  DCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSV 121
           D  FQDAVH++SGGL  TLKM+D N+ TE+V+GTHD+PIR +EY   VN ILTG WD +V
Sbjct: 92  DVAFQDAVHAYSGGLGNTLKMYDINSNTESVMGTHDKPIRKIEYCAAVNAILTGGWDAAV 151

Query: 122 KMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKF 181
           K+WDPR+  CVG+Y QPD V  +S+CG+KFVVGTA RKVCIWDLRNM  + QRRESSLK+
Sbjct: 152 KLWDPRTPTCVGSYLQPDVVLALSVCGDKFVVGTAKRKVCIWDLRNMAGMFQRRESSLKY 211

Query: 182 QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI 241
           QTRCIK FPN+QGYVLSSIEGR AVEYLDT PE QK KYAFKCHRIKE+ +E IYPVNAI
Sbjct: 212 QTRCIKGFPNEQGYVLSSIEGRVAVEYLDTTPEAQKKKYAFKCHRIKENNVEHIYPVNAI 271

Query: 242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE 301
           SFH  YNTFATGGSDGYVNIWDGFNKKRLCQFHRY+ G+ +L FS+DG+VLAI  SY  E
Sbjct: 272 SFHSTYNTFATGGSDGYVNIWDGFNKKRLCQFHRYNAGVAALSFSHDGSVLAIGVSYLNE 331

Query: 302 LETPPDPIPPNNIFIRHVTDQETKPK 327
            E PP       I+IR+V DQETKPK
Sbjct: 332 AEIPPGGNDEREIYIRYVNDQETKPK 357

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
UNIPROTKB|Q1JQB2	326	BUB3 "Mitotic checkpoint prote	0.975	0.978	0.660	9.8e-119
UNIPROTKB|O43684	328	BUB3 "Mitotic checkpoint prote	0.975	0.972	0.660	9.8e-119
UNIPROTKB|F2Z5F3	328	BUB3 "Uncharacterized protein"	0.975	0.972	0.660	9.8e-119
MGI|MGI:1343463	326	Bub3 "budding uninhibited by b	0.975	0.978	0.660	9.8e-119
UNIPROTKB|Q5RB58	328	BUB3 "Mitotic checkpoint prote	0.975	0.972	0.657	1.8e-117
UNIPROTKB|Q5ZHW3	329	BUB3 "Uncharacterized protein"	0.975	0.969	0.651	1e-116
ZFIN|ZDB-GENE-041010-210	326	bub3 "BUB3 budding uninhibited	0.975	0.978	0.641	6.4e-115
UNIPROTKB|J3QT28	278	BUB3 "Mitotic checkpoint prote	0.831	0.978	0.683	2.7e-107
UNIPROTKB|E1C9E5	258	BUB3 "Uncharacterized protein"	0.773	0.980	0.660	4.2e-95
FB|FBgn0025457	327	Bub3 "Bub3" [Drosophila melano	0.975	0.975	0.56	1.4e-94

UNIPROTKB|Q1JQB2 BUB3 "Mitotic checkpoint protein BUB3" [Bos taurus (taxid:9913)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 212/321 (66%), Positives = 254/321 (79%)

Query:     7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
             E+ LN PPEDGI++VKF+PN++QFLL SSWD +V LYD+  N++RLKY H+  VLDC F 
Sbjct:     6 EFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFY 65

Query:    67 DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
             D  H++SGGLD  LKM D NT  E ++GTHD PIR VEY  EVN ++TGSWD +VK+WDP
Sbjct:    66 DPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDP 125

Query:   127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
             R+    G ++QP+KV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct:   126 RTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 185

Query:   187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
             + FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+KE+ IE+IYPVNAISFH  
Sbjct:   186 RAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNI 245

Query:   247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETXX 306
             +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL FS DG  LAIA SY YE++   
Sbjct:   246 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTE 305

Query:   307 XXXXXXXXFIRHVTDQETKPK 327
                     FIR VTD ETKPK
Sbjct:   306 HPEDGI--FIRQVTDAETKPK 324

GO:0051983 "regulation of chromosome segregation" evidence=ISS

GO:0071173 "spindle assembly checkpoint" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007126 "meiosis" evidence=IEA

UNIPROTKB|O43684 BUB3 "Mitotic checkpoint protein BUB3" [Homo sapiens (taxid:9606)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 212/321 (66%), Positives = 254/321 (79%)

Query:     7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
             E+ LN PPEDGI++VKF+PN++QFLL SSWD +V LYD+  N++RLKY H+  VLDC F 
Sbjct:     6 EFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFY 65

Query:    67 DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
             D  H++SGGLD  LKM D NT  E ++GTHD PIR VEY  EVN ++TGSWD +VK+WDP
Sbjct:    66 DPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDP 125

Query:   127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
             R+    G ++QP+KV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct:   126 RTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 185

Query:   187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
             + FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+KE+ IE+IYPVNAISFH  
Sbjct:   186 RAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNI 245

Query:   247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETXX 306
             +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL FS DG  LAIA SY YE++   
Sbjct:   246 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTE 305

Query:   307 XXXXXXXXFIRHVTDQETKPK 327
                     FIR VTD ETKPK
Sbjct:   306 HPEDGI--FIRQVTDAETKPK 324

GO:0007126 "meiosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0071173 "spindle assembly checkpoint" evidence=IDA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F2Z5F3 BUB3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 212/321 (66%), Positives = 254/321 (79%)

Query:     7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
             E+ LN PPEDGI++VKF+PN++QFLL SSWD +V LYD+  N++RLKY H+  VLDC F 
Sbjct:     6 EFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFY 65

Query:    67 DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
             D  H++SGGLD  LKM D NT  E ++GTHD PIR VEY  EVN ++TGSWD +VK+WDP
Sbjct:    66 DPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDP 125

Query:   127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
             R+    G ++QP+KV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct:   126 RTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 185

Query:   187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
             + FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+KE+ IE+IYPVNAISFH  
Sbjct:   186 RAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNI 245

Query:   247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETXX 306
             +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL FS DG  LAIA SY YE++   
Sbjct:   246 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTE 305

Query:   307 XXXXXXXXFIRHVTDQETKPK 327
                     FIR VTD ETKPK
Sbjct:   306 HPEDGI--FIRQVTDAETKPK 324

GO:0071173 "spindle assembly checkpoint" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

MGI|MGI:1343463 Bub3 "budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 212/321 (66%), Positives = 254/321 (79%)

Query:     7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
             E+ LN PPEDGI++VKF+PN++QFLL SSWD +V LYD+  N++RLKY H+  VLDC F 
Sbjct:     6 EFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFY 65

Query:    67 DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
             D  H++SGGLD  LKM D NT  E ++GTHD PIR VEY  EVN ++TGSWD +VK+WDP
Sbjct:    66 DPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDP 125

Query:   127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
             R+    G ++QP+KV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct:   126 RTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 185

Query:   187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
             + FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+KE+ IE+IYPVNAISFH  
Sbjct:   186 RAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNI 245

Query:   247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETXX 306
             +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL FS DG  LAIA SY YE++   
Sbjct:   246 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTE 305

Query:   307 XXXXXXXXFIRHVTDQETKPK 327
                     FIR VTD ETKPK
Sbjct:   306 HPEDGI--FIRQVTDAETKPK 324

GO:0000070 "mitotic sister chromatid segregation" evidence=IMP

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IMP

GO:0007067 "mitosis" evidence=IEA

GO:0007126 "meiosis" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IDA

GO:0071173 "spindle assembly checkpoint" evidence=ISO;IDA

UNIPROTKB|Q5RB58 BUB3 "Mitotic checkpoint protein BUB3" [Pongo abelii (taxid:9601)]

 Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
 Identities = 211/321 (65%), Positives = 252/321 (78%)

Query:     7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
             E+ LN PPEDGI++VKF+PN++QFLL SSWD +V LYD+  N++RLKY H+  VLDC F 
Sbjct:     6 EFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFY 65

Query:    67 DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
             D  H++SGGLD  LKM D NT  E ++GTHD PIR VEY  EVN + TGSWD +VK+WDP
Sbjct:    66 DPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMATGSWDQTVKLWDP 125

Query:   127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
             R+    G ++QP+KV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct:   126 RTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 185

Query:   187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
             + F NKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+KE+ IE+IYPVNAISFH  
Sbjct:   186 RAFLNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNI 245

Query:   247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETXX 306
             +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL FS DG  LAIA SY YE++   
Sbjct:   246 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTE 305

Query:   307 XXXXXXXXFIRHVTDQETKPK 327
                     FIR VTD ETKPK
Sbjct:   306 HPEDGI--FIRQVTDAETKPK 324

GO:0051983 "regulation of chromosome segregation" evidence=ISS

GO:0071173 "spindle assembly checkpoint" evidence=ISS

UNIPROTKB|Q5ZHW3 BUB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
 Identities = 209/321 (65%), Positives = 251/321 (78%)

Query:     7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
             E+ LN  P+DGI++VKF+PN++QFLL SSWD  V LYD+  N++RLKY HS  VLDC F 
Sbjct:     9 EFKLNQTPDDGISSVKFSPNTSQFLLVSSWDTTVRLYDVPANSMRLKYQHSGAVLDCAFY 68

Query:    67 DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
             D  H++SGGLD  LKM D NT  E ++G HD PIR VEY  EVN ++TGSWD +VK+WDP
Sbjct:    69 DPTHAWSGGLDQQLKMHDLNTDQENLVGGHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDP 128

Query:   127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
             R+    G ++QP+KV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct:   129 RTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 188

Query:   187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
             + FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+KE+ IE+IYPVNAISFH  
Sbjct:   189 RAFPNKQGYVLSSIEGRVAVEYLDPSPEIQKKKYAFKCHRLKENNIEQIYPVNAISFHNV 248

Query:   247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETXX 306
             +NTFATGGSDG+VNIWD FNKKRLCQFHRY T I SL FS DG  LAIA SY YE++   
Sbjct:   249 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDIE 308

Query:   307 XXXXXXXXFIRHVTDQETKPK 327
                     +IR VTD ETKPK
Sbjct:   309 HPEDGI--YIRQVTDAETKPK 327

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0071173 "spindle assembly checkpoint" evidence=IEA

ZFIN|ZDB-GENE-041010-210 bub3 "BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
 Identities = 206/321 (64%), Positives = 251/321 (78%)

Query:     7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
             E+ L   PED ++AVKF+P+S+QFLL SSWD +V LYD + N++R+KY H  PVLDC F 
Sbjct:     6 EFKLAQGPEDSVSAVKFSPSSSQFLLVSSWDGSVRLYDASANSMRMKYQHLAPVLDCAFS 65

Query:    67 DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
             D  H++SGGLD  LK  D NT  +T++GTHD PIR VE+  EVN ++TGSWD SV++WDP
Sbjct:    66 DPTHAWSGGLDSQLKTHDLNTDQDTIVGTHDAPIRCVEFCPEVNVLVTGSWDQSVRLWDP 125

Query:   127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
             R+    G +TQP+KV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct:   126 RTPCNAGTFTQPEKVYTLSVAGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 185

Query:   187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
             + FPNKQGYVLSSIEGR AVEYLD   E+QK KYAFKCHR+KE+GIE++YPVNAISFH  
Sbjct:   186 RAFPNKQGYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRLKENGIEQVYPVNAISFHSV 245

Query:   247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETXX 306
             +NTFATGGSDG+VNIWD FNKKRLCQFHRY + I SL FS DG++LAIA SY  EL    
Sbjct:   246 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPSSIASLSFSTDGSLLAIASSYMQEL--GD 303

Query:   307 XXXXXXXXFIRHVTDQETKPK 327
                     FIR VTD ETKPK
Sbjct:   304 VSHPADAVFIRQVTDAETKPK 324

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|J3QT28 BUB3 "Mitotic checkpoint protein BUB3" [Homo sapiens (taxid:9606)]

 Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
 Identities = 186/272 (68%), Positives = 226/272 (83%)

Query:     7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
             E+ LN PPEDGI++VKF+PN++QFLL SSWD +V LYD+  N++RLKY H+  VLDC F 
Sbjct:     6 EFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFY 65

Query:    67 DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
             D  H++SGGLD  LKM D NT  E ++GTHD PIR VEY  EVN ++TGSWD +VK+WDP
Sbjct:    66 DPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDP 125

Query:   127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
             R+    G ++QP+KV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct:   126 RTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 185

Query:   187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
             + FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+KE+ IE+IYPVNAISFH  
Sbjct:   186 RAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNI 245

Query:   247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT 278
             +NTFATGGSDG+VNIWD FNKKRLCQFHRY T
Sbjct:   246 HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPT 277

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0071173 "spindle assembly checkpoint" evidence=IEA

UNIPROTKB|E1C9E5 BUB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 167/253 (66%), Positives = 206/253 (81%)

Query:     7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
             E+ LN  P+DGI++VKF+PN++QFLL SSWD  V LYD+  N++RLKY HS  VLDC F 
Sbjct:     6 EFKLNQTPDDGISSVKFSPNTSQFLLVSSWDTTVRLYDVPANSMRLKYQHSGAVLDCAFY 65

Query:    67 DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
             D  H++SGGLD  LKM D NT  E ++G HD PIR VEY  EVN ++TGSWD +VK+WDP
Sbjct:    66 DPTHAWSGGLDQQLKMHDLNTDQENLVGGHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDP 125

Query:   127 RSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
             R+    G ++QP+KV+T+S+ G++ +VGTAGR+V +WDLRNMGY+ QRRESSLK+QTRCI
Sbjct:   126 RTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCI 185

Query:   187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
             + FPNKQGYVLSSIEGR AVEYLD  PE+QK KYAFKCHR+KE+ IE+IYPVNAISFH  
Sbjct:   186 RAFPNKQGYVLSSIEGRVAVEYLDPSPEIQKKKYAFKCHRLKENNIEQIYPVNAISFHNV 245

Query:   247 YNTFATGGSDGYV 259
             +NTFATGGSDG+V
Sbjct:   246 HNTFATGGSDGFV 258

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0071173 "spindle assembly checkpoint" evidence=IEA

FB|FBgn0025457 Bub3 "Bub3" [Drosophila melanogaster (taxid:7227)]

 Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
 Identities = 182/325 (56%), Positives = 225/325 (69%)

Query:     7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ 66
             E+ LN+PPED I+AVKF P SNQ++ ASSWD  +  YD+  N LR K+    P+LDC F 
Sbjct:     5 EFKLNNPPEDLISAVKFGPKSNQYMAASSWDGTLRFYDVPANQLRQKFVQDAPLLDCAFM 64

Query:    67 DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
             D VH  SG LD  L++FD NTQ E++IG H++PIR VE+++ VN ILTGSWD +VK+WD 
Sbjct:    65 DIVHVVSGSLDNQLRLFDVNTQAESIIGAHEEPIRCVEHAEYVNGILTGSWDNTVKLWDM 124

Query:   127 RSSRCVGNYTQPD-KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRC 185
             R  RCVG + Q + KV++MS+  EK VV T+ RKV IWDLR  G +    E+ +  Q   
Sbjct:   125 REKRCVGTFEQNNGKVYSMSVIDEKIVVATSDRKVLIWDLRKDGQL--HHEAGVLAQVPR 182

Query:   186 IKCF---PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS 242
                F   P K+  V+SSIEGR AVEYLD  PE+Q+ K+AFKCHR +E  IE+IYPVNA+S
Sbjct:   183 PAAFVYSPTKKATVMSSIEGRVAVEYLDHDPEVQRRKFAFKCHRNREQNIEQIYPVNALS 242

Query:   243 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYEL 302
             FH  Y TFATGGSDG VNIWDGFNKKRLCQFH YDT I++L FS DG+ LAI CSY  +L
Sbjct:   243 FHNVYQTFATGGSDGIVNIWDGFNKKRLCQFHEYDTSISTLNFSSDGSALAIGCSYLDQL 302

Query:   303 ETXXXXXXXXXXFIRHVTDQETKPK 327
                         +IR+ TDQETK K
Sbjct:   303 PETPATVPHPAIYIRYPTDQETKQK 327

GO:0005654 "nucleoplasm" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0007093 "mitotic cell cycle checkpoint" evidence=NAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WVA3	BUB3_MOUSE	No assigned EC number	0.6666	0.9755	0.9785	yes	N/A
O43684	BUB3_HUMAN	No assigned EC number	0.6666	0.9755	0.9725	yes	N/A
Q1JQB2	BUB3_BOVIN	No assigned EC number	0.6666	0.9755	0.9785	yes	N/A
P41838	RAE1_SCHPO	No assigned EC number	0.3273	0.9847	0.9147	yes	N/A
Q54DM1	BUB3_DICDI	No assigned EC number	0.4451	0.9571	0.9456	yes	N/A
P40066	GLE2_YEAST	No assigned EC number	0.35	0.9908	0.8876	yes	N/A
Q5RB58	BUB3_PONAB	No assigned EC number	0.6635	0.9755	0.9725	yes	N/A
Q9YGY3	BUB3_XENLA	No assigned EC number	0.6666	0.9755	0.9666	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	327
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-29
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
smart00320	40	smart00320, WD40, WD40 repeats	4e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  112 bits (281), Expect = 7e-29
 Identities = 65/292 (22%), Positives = 119/292 (40%), Gaps = 29/292 (9%)

Query: 15  EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCFQDAVHS-F 72
             G+T V F+P+    L   S D  + ++D+     LR    H+ PV D           
Sbjct: 9   TGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 73  SGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC 131
           SG  D T++++D  T      +  H   + +V +S +   + + S D ++K+WD  + +C
Sbjct: 68  SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127

Query: 132 VGNYT-QPDKVFTMSLCGEKFVVGTAG--RKVCIWDLRNMGYIMQRRESSLKFQT---RC 185
           +       D V +++   +   V ++     + +WDLR    +       L   T     
Sbjct: 128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT-----LTGHTGEVNS 182

Query: 186 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ 245
           +   P+ +  + SS +G   +  L TG    K     + H            VN+++F  
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTG----KCLGTLRGHE---------NGVNSVAFSP 229

Query: 246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
           +    A+G  DG + +WD    + +     +   +TSL +S DG  L  + S
Sbjct: 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL-ASGS 280

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 95.9 bits (239), Expect = 8e-23
 Identities = 45/255 (17%), Positives = 92/255 (36%), Gaps = 64/255 (25%)

Query: 15  EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCF-QDAVHSF 72
              +++V F+P+  + L +SS D  + ++D+           H+D V    F  D     
Sbjct: 93  TSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA 151

Query: 73  SGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC 131
           S   D T+K++D  T +    +  H   + +V +S +   +L+ S D ++K+WD  + +C
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211

Query: 132 VGNYT-QPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC 188
           +G      + V +++   +      G+    + +WDLR                  C++ 
Sbjct: 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT---------------GECVQT 256

Query: 189 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN 248
                                                            V ++++  +  
Sbjct: 257 LSGHTN------------------------------------------SVTSLAWSPDGK 274

Query: 249 TFATGGSDGYVNIWD 263
             A+G +DG + IWD
Sbjct: 275 RLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 96.3 bits (238), Expect = 4e-22
 Identities = 67/297 (22%), Positives = 121/297 (40%), Gaps = 27/297 (9%)

Query: 12  SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HSDPVLDCCFQ--DA 68
               + +T++ F+P+       SS D  + L+D+         A H+DPV    F     
Sbjct: 152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211

Query: 69  VHSFSGGLDCTLKMFDFNT---QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
           +   SG  D T++++D +T      T+ G  D  + +   S + + + +GS D ++++WD
Sbjct: 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF--SPDGSLLASGSSDGTIRLWD 269

Query: 126 PRSSRCVGNYTQP--DKVFTMSL--CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKF 181
            RSS  +          V +++    G+    G++   V +WDL     +        + 
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329

Query: 182 QTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA 240
               +   P+    V   S +G   +  L TG  ++               +E    V +
Sbjct: 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT--------------LEGHSNVLS 375

Query: 241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
           +SF  +    ++G +DG V +WD      L     + + +TSL FS DG  LA   S
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 93.2 bits (230), Expect = 4e-21
 Identities = 64/311 (20%), Positives = 118/311 (37%), Gaps = 31/311 (9%)

Query: 5   KTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY---AHSDPVL 61
                L    ED IT++ F+P+  + LL+ S D  + L+D+ N    +K     H   V 
Sbjct: 55  DLSSLLLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS 113

Query: 62  DCCFQ----DAVHSFSGGLDCTLKMFDFNTQTETV--IGTHDQPIRAVEYS-DEVNCILT 114
                    +++   S  LD T+K++D +T  + +  +  H + + ++ +S D       
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173

Query: 115 GSWDTSVKMWDPRSSRCVGNYTQPDKVFT----MSLCGEKFVVGTAGRKVCIWDLRNMGY 170
            S D ++K+WD R+ + +          +        G     G++   + +WDL     
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED 230
           +              +  F +  G +L+S      +   D       +      H     
Sbjct: 234 LRSTLSG---HSDSVVSSF-SPDGSLLASGSSDGTIRLWDL-RSSSSLLRTLSGHS---- 284

Query: 231 GIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG--ITSLCFSYD 288
                  V +++F  +    A+G SDG V +WD    K L           ++SL FS D
Sbjct: 285 -----SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339

Query: 289 GNVLAIACSYN 299
           G++L    S +
Sbjct: 340 GSLLVSGGSDD 350

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 81.3 bits (199), Expect = 5e-17
 Identities = 54/282 (19%), Positives = 110/282 (39%), Gaps = 26/282 (9%)

Query: 2   VDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--RLKYAHSDP 59
           + +    S  +   D ++++ F+P+    + + S D  + L+D++   L       HSD 
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244

Query: 60  VLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETV--IGTHDQPIRAVEYSDEVNCILTGSW 117
           V+     D     SG  D T++++D  + +  +  +  H   + +V +S +   + +GS 
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304

Query: 118 DTSVKMWDPRSSRCVGNYTQPD-----KVFTMSLCGEKFVVGTAGRK-VCIWDLRNMGYI 171
           D +V++WD  + + + + T           + S  G   V G +    + +WDLR    +
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364

Query: 172 MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDG 231
                 S       +   P+ +     S +G   +  L TG     +      H      
Sbjct: 365 KTLEGHS---NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG----SLLRNLDGH------ 411

Query: 232 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF 273
                 V ++ F  +  + A+G SD  + +WD     +   F
Sbjct: 412 ---TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 28/210 (13%)

Query: 96  HDQPIRAVEYSDEVNCILTGSWDTSVKMWD---PRSSRCVGNYTQPDKVFTMSLCGEKFV 152
           H   +  V +S +   + TGS D ++K+WD       R +  +T P +    S  G    
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 153 VGTAGRKVCIWDLRNMGYIMQRRESSL---KFQTRCIKCFPNKQGYVLSSIE-GRAAVEY 208
            G++ + + +WDL            +L         +   P+ +  + SS       V  
Sbjct: 68  SGSSDKTIRLWDLET-----GECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWD 121

Query: 209 LDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DGYVNIWDGFNK 267
           ++TG    K     + H    D       VN+++F  +  TF    S DG + +WD    
Sbjct: 122 VETG----KCLTTLRGH---TD------WVNSVAFSPD-GTFVASSSQDGTIKLWDLRTG 167

Query: 268 KRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
           K +     +   + S+ FS DG  L  + S
Sbjct: 168 KCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.2 bits (121), Expect = 4e-07
 Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 15  EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFS 73
           E  ++++ F+P+ +  +   S D  + L+D+              VL   F  D     S
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSS 387

Query: 74  GGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
           G  D T++++D +T +    +  H   + ++++S +   + +GS D ++++WD ++S   
Sbjct: 388 GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447

Query: 133 GNYTQPDKVFT 143
            +++   KV  
Sbjct: 448 VSFSPDGKVLA 458

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 8e-05
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWD 263
           PV +++F  + N  A+G  DG V +WD
Sbjct: 13  PVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 91  TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
             +  H  P+ +V +S + N + +GS D +V++WD
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 92  VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
            +  H  P+ +V +S +   + +GS D ++K+WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWD 263
           PV +++F  +    A+G  DG + +WD
Sbjct: 14  PVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 24/181 (13%)

Query: 12  SPP-----EDGITAVKFAPNSNQFLLASSWDCNVSLYDI--------TNNNLRLKYAHSD 58
           +PP     E  I  V F P   Q L  +S D  +  + I         ++ +     H+ 
Sbjct: 67  NPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK 126

Query: 59  PVLDCCFQDAVHSF--SGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTG 115
            V    F  +  +   S G D  + ++D        VI  H   I ++E++ + + + T 
Sbjct: 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT 186

Query: 116 SWDTSVKMWDPRSSR--CVGNYTQPDKVFTMSLCGEKFVVGTAG------RKVCIWDLRN 167
           S D  + + DPR              K         K ++ T G      R++ +WD R 
Sbjct: 187 SKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246

Query: 168 M 168
           M
Sbjct: 247 M 247

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
KOG1036|consensus	323		100.0
KOG0647|consensus	347		100.0
KOG0271|consensus	480		100.0
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0315|consensus	311		100.0
KOG0286|consensus	343		100.0
KOG0282|consensus	503		100.0
KOG0316|consensus	307		100.0
KOG0279|consensus	315		100.0
KOG0265|consensus	338		100.0
KOG0292|consensus	1202		100.0
KOG0272|consensus	459		100.0
KOG0315|consensus	311		100.0
KOG0273|consensus	524		100.0
KOG0263|consensus	707		100.0
KOG0285|consensus	460		100.0
KOG0318|consensus	603		100.0
KOG0286|consensus	343		100.0
KOG1446|consensus	311		100.0
KOG0279|consensus	315		100.0
KOG0266|consensus	456		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0295|consensus	406		100.0
KOG0296|consensus	399		100.0
KOG0291|consensus	893		100.0
KOG0284|consensus	464		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
KOG0288|consensus	459		99.98
KOG0273|consensus	524		99.98
KOG0284|consensus	464		99.98
KOG0263|consensus	707		99.97
KOG0291|consensus	893		99.97
KOG0276|consensus	794		99.97
KOG0278|consensus	334		99.97
KOG0275|consensus	508		99.97
KOG0645|consensus	312		99.97
KOG0283|consensus	712		99.97
KOG0313|consensus	423		99.97
KOG0293|consensus	519		99.97
KOG1407|consensus	313		99.97
KOG0318|consensus	603		99.97
PTZ00421	493	coronin; Provisional	99.96
KOG0319|consensus	775		99.96
KOG1407|consensus	313		99.96
KOG0277|consensus	311		99.96
KOG0299|consensus	479		99.96
KOG0310|consensus	487		99.96
KOG0278|consensus	334		99.96
KOG0645|consensus	312		99.96
KOG0281|consensus	499		99.96
KOG0319|consensus	775		99.96
KOG0266|consensus	456		99.96
KOG0306|consensus	888		99.96
KOG0281|consensus	499		99.96
KOG0643|consensus	327		99.96
KOG0268|consensus	433		99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0293|consensus	519		99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0282|consensus	503		99.95
KOG0285|consensus	460		99.95
KOG0973|consensus	942		99.94
KOG0265|consensus	338		99.94
KOG0295|consensus	406		99.94
KOG0305|consensus	484		99.94
KOG0643|consensus	327		99.94
KOG0294|consensus	362		99.94
KOG0296|consensus	399		99.93
KOG0308|consensus	735		99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0274|consensus	537		99.93
PTZ00420	568	coronin; Provisional	99.93
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
KOG0647|consensus	347		99.93
KOG0641|consensus	350		99.93
KOG0274|consensus	537		99.93
KOG0264|consensus	422		99.93
KOG0316|consensus	307		99.93
KOG1539|consensus	910		99.93
KOG0292|consensus	1202		99.93
KOG0276|consensus	794		99.93
KOG0275|consensus	508		99.93
KOG0288|consensus	459		99.92
KOG0306|consensus	888		99.92
KOG0277|consensus	311		99.92
KOG0289|consensus	506		99.92
KOG0772|consensus	641		99.91
KOG2055|consensus	514		99.91
KOG0310|consensus	487		99.91
KOG0640|consensus	430		99.91
KOG1332|consensus	299		99.91
KOG0283|consensus	712		99.91
KOG0305|consensus	484		99.91
KOG1274|consensus	933		99.91
KOG0772|consensus	641		99.91
KOG0641|consensus	350		99.91
KOG0640|consensus	430		99.91
KOG0646|consensus	476		99.91
KOG2096|consensus	420		99.91
KOG2106|consensus	626		99.91
KOG0639|consensus	705		99.9
KOG0313|consensus	423		99.9
KOG2106|consensus	626		99.9
KOG0267|consensus	825		99.9
KOG0299|consensus	479		99.9
KOG4328|consensus	498		99.89
KOG4283|consensus	397		99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0289|consensus	506		99.89
KOG0294|consensus	362		99.89
KOG0301|consensus	745		99.89
KOG0300|consensus	481		99.88
KOG0302|consensus	440		99.87
KOG1446|consensus	311		99.87
KOG0300|consensus	481		99.87
KOG0269|consensus	839		99.87
KOG0268|consensus	433		99.87
KOG1036|consensus	323		99.86
KOG0321|consensus	720		99.86
KOG0301|consensus	745		99.86
KOG0308|consensus	735		99.85
KOG1408|consensus	1080		99.85
KOG0264|consensus	422		99.85
KOG0973|consensus	942		99.85
KOG0269|consensus	839		99.85
KOG0642|consensus	577		99.84
KOG0270|consensus	463		99.84
KOG2048|consensus	691		99.84
KOG0322|consensus	323		99.84
KOG1274|consensus	933		99.83
KOG0267|consensus	825		99.83
KOG0321|consensus	720		99.83
KOG2445|consensus	361		99.83
KOG4283|consensus	397		99.83
KOG1009|consensus	434		99.83
KOG1539|consensus	910		99.82
KOG0639|consensus	705		99.82
KOG1408|consensus	1080		99.81
KOG2096|consensus	420		99.81
KOG1034|consensus	385		99.81
KOG4227|consensus	609		99.81
KOG1273|consensus	405		99.81
KOG2055|consensus	514		99.81
KOG4378|consensus	673		99.8
KOG2048|consensus	691		99.8
KOG1273|consensus	405		99.8
KOG0646|consensus	476		99.8
KOG1538|consensus	1081		99.8
KOG0650|consensus	733		99.8
KOG1063|consensus	764		99.79
KOG1332|consensus	299		99.79
KOG0302|consensus	440		99.76
KOG1963|consensus	792		99.76
KOG0307|consensus	1049		99.76
KOG0290|consensus	364		99.74
KOG1517|consensus	1387		99.74
KOG1445|consensus	1012		99.74
KOG0303|consensus	472		99.74
KOG2919|consensus	406		99.73
KOG1034|consensus	385		99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG0644|consensus	1113		99.72
KOG2445|consensus	361		99.72
KOG1063|consensus	764		99.72
KOG2110|consensus	391		99.71
KOG0270|consensus	463		99.71
KOG4328|consensus	498		99.71
COG2319	466	FOG: WD40 repeat [General function prediction only	99.7
KOG0649|consensus	325		99.69
KOG4378|consensus	673		99.69
KOG0771|consensus	398		99.69
KOG1334|consensus	559		99.67
KOG1587|consensus	555		99.66
KOG1007|consensus	370		99.66
KOG0307|consensus	1049		99.65
KOG1524|consensus	737		99.65
KOG0303|consensus	472		99.64
KOG1310|consensus	758		99.64
PRK01742	429	tolB translocation protein TolB; Provisional	99.64
KOG2111|consensus	346		99.64
COG2319	466	FOG: WD40 repeat [General function prediction only	99.63
PRK11028	330	6-phosphogluconolactonase; Provisional	99.61
KOG1188|consensus	376		99.6
KOG1445|consensus	1012		99.59
KOG1240|consensus	1431		99.59
KOG1517|consensus	1387		99.59
KOG1587|consensus	555		99.59
KOG0650|consensus	733		99.57
KOG0649|consensus	325		99.56
KOG1538|consensus	1081		99.56
KOG1963|consensus	792		99.55
KOG1272|consensus	545		99.55
KOG2919|consensus	406		99.55
KOG1524|consensus	737		99.55
KOG1009|consensus	434		99.53
KOG1007|consensus	370		99.52
PRK01742	429	tolB translocation protein TolB; Provisional	99.52
KOG1523|consensus	361		99.51
PRK03629	429	tolB translocation protein TolB; Provisional	99.51
KOG0771|consensus	398		99.5
KOG1188|consensus	376		99.48
KOG0642|consensus	577		99.47
KOG2139|consensus	445		99.45
PRK05137	435	tolB translocation protein TolB; Provisional	99.44
KOG4227|consensus	609		99.43
KOG2110|consensus	391		99.43
KOG1523|consensus	361		99.4
PRK04922	433	tolB translocation protein TolB; Provisional	99.4
PRK03629	429	tolB translocation protein TolB; Provisional	99.39
PRK04922	433	tolB translocation protein TolB; Provisional	99.39
KOG0290|consensus	364		99.38
KOG4497|consensus	447		99.38
KOG2321|consensus	703		99.37
PRK02889	427	tolB translocation protein TolB; Provisional	99.37
KOG1310|consensus	758		99.36
KOG0322|consensus	323		99.36
KOG1240|consensus	1431		99.35
KOG0644|consensus	1113		99.35
PRK02889	427	tolB translocation protein TolB; Provisional	99.35
KOG3881|consensus	412		99.35
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.34
PRK05137	435	tolB translocation protein TolB; Provisional	99.34
KOG2394|consensus	636		99.34
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.33
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.31
KOG4497|consensus	447		99.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.31
KOG2111|consensus	346		99.31
KOG0974|consensus	967		99.3
KOG3881|consensus	412		99.3
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.29
KOG2139|consensus	445		99.27
KOG2394|consensus	636		99.25
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.22
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.21
KOG4547|consensus	541		99.21
PRK04792	448	tolB translocation protein TolB; Provisional	99.2
KOG1272|consensus	545		99.2
PRK00178	430	tolB translocation protein TolB; Provisional	99.2
PRK00178	430	tolB translocation protein TolB; Provisional	99.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.09
KOG0974|consensus	967		99.07
KOG1064|consensus	2439		99.03
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.03
PRK04792	448	tolB translocation protein TolB; Provisional	99.02
KOG1064|consensus	2439		99.0
KOG4532|consensus	344		98.99
PRK01029	428	tolB translocation protein TolB; Provisional	98.99
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.99
KOG2315|consensus	566		98.98
KOG1354|consensus	433		98.97
KOG1354|consensus	433		98.94
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.93
KOG1334|consensus	559		98.91
KOG2321|consensus	703		98.89
KOG2315|consensus	566		98.89
KOG0280|consensus	339		98.89
KOG2041|consensus	1189		98.88
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.88
PRK01029	428	tolB translocation protein TolB; Provisional	98.86
KOG1409|consensus	404		98.83
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.83
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.83
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.79
KOG2314|consensus	698		98.78
KOG3914|consensus	390		98.73
KOG2695|consensus	425		98.7
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.67
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.66
KOG4190|consensus	1034		98.64
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.62
KOG0882|consensus	558		98.62
PRK04043	419	tolB translocation protein TolB; Provisional	98.6
KOG3914|consensus	390		98.59
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.59
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.57
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.57
KOG0280|consensus	339		98.56
PRK04043	419	tolB translocation protein TolB; Provisional	98.55
KOG2695|consensus	425		98.51
KOG4547|consensus	541		98.51
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.49
KOG4190|consensus	1034		98.47
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.46
COG4946	668	Uncharacterized protein related to the periplasmic	98.44
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.4
KOG1912|consensus	1062		98.39
KOG1832|consensus	1516		98.39
KOG1409|consensus	404		98.36
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.35
KOG2041|consensus	1189		98.34
KOG4532|consensus	344		98.33
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.29
KOG1275|consensus	1118		98.28
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.24
KOG3617|consensus	1416		98.23
COG4946	668	Uncharacterized protein related to the periplasmic	98.19
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.19
KOG1645|consensus	463		98.17
KOG2314|consensus	698		98.16
KOG2066|consensus	846		98.16
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.14
KOG2066|consensus	846		98.1
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.1
KOG0309|consensus	1081		98.09
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.06
KOG1008|consensus	783		98.06
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.04
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.99
KOG4714|consensus	319		97.98
KOG0309|consensus	1081		97.96
KOG0882|consensus	558		97.96
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.92
KOG4714|consensus	319		97.87
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.83
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.81
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.8
KOG1912|consensus	1062		97.8
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.78
KOG1645|consensus	463		97.76
KOG1275|consensus	1118		97.72
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.68
KOG3621|consensus	726		97.66
KOG1832|consensus	1516		97.66
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.58
KOG2114|consensus	933		97.57
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.57
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.54
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.53
KOG1920|consensus	1265		97.51
KOG2114|consensus	933		97.41
PRK02888	635	nitrous-oxide reductase; Validated	97.4
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.35
KOG1920|consensus	1265		97.19
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.18
KOG1008|consensus	783		97.16
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.14
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.12
KOG2395|consensus	644		97.05
KOG2444|consensus	238		97.03
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.0
KOG4640|consensus	665		96.95
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.95
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.8
KOG3617|consensus	1416		96.77
KOG4649|consensus	354		96.75
KOG3621|consensus	726		96.71
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.63
KOG1897|consensus	1096		96.62
KOG2444|consensus	238		96.52
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.52
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.43
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.33
KOG4640|consensus	665		96.31
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.14
KOG4441|consensus	571		96.02
COG3391	381	Uncharacterized conserved protein [Function unknow	95.86
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	95.8
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.55
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.5
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.41
KOG2079|consensus	1206		95.3
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.14
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.04
KOG2395|consensus	644		95.01
COG3391	381	Uncharacterized conserved protein [Function unknow	94.9
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.81
PHA02713	557	hypothetical protein; Provisional	94.8
KOG4649|consensus	354		94.65
PRK02888	635	nitrous-oxide reductase; Validated	94.58
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.56
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.51
KOG4499|consensus	310		94.34
KOG2079|consensus	1206		94.16
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.13
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.1
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.86
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.59
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.46
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.27
PHA02713	557	hypothetical protein; Provisional	93.12
KOG4460|consensus	741		92.79
PRK13616	591	lipoprotein LpqB; Provisional	92.64
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	92.61
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.58
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.52
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.29
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.11
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.98
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.92
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.54
KOG2377|consensus	657		91.37
KOG4499|consensus	310		91.36
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.21
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.76
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	90.39
PRK13616	591	lipoprotein LpqB; Provisional	89.62
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.25
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.98
KOG1897|consensus	1096		88.97
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.96
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	88.73
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.59
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.05
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.96
KOG4441|consensus	571		87.26
COG5167	776	VID27 Protein involved in vacuole import and degra	87.04
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	86.57
KOG3630|consensus	1405		86.48
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	85.95
KOG2280|consensus	829		85.89
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	85.85
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.75
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	85.59
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	85.08
PHA03098	534	kelch-like protein; Provisional	84.98
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	84.2
PHA02790	480	Kelch-like protein; Provisional	83.26
PHA03098	534	kelch-like protein; Provisional	83.05
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	82.96
KOG3616|consensus	1636		82.78
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	82.44
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	82.41
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.82
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	80.84
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	80.65
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	80.48

>KOG1036|consensus

Probab=100.00  E-value=6.6e-57  Score=363.86  Aligned_cols=320  Identities=56%  Similarity=0.979  Sum_probs=302.3

Q ss_pred             ceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEc
Q psy11885          6 TEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus         6 ~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~   85 (327)
                      .++.+.-++++.|..+.|+|. ...|+++++||++++||+...+++..+.|+.++++|+|.+..++++|+.||.||++|+
T Consensus         4 ~~~~l~npP~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen    4 NEFELENPPEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDL   82 (323)
T ss_pred             cccccCCCChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEe
Confidence            356778888999999999985 4677778899999999999998888899999999999999999999999999999999


Q ss_pred             CCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         86 NTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        86 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      +++....++.|..+|+++.+++....+++||+|++|++||.+...+...+.....+++++..++.|++|+.++.|.+||+
T Consensus        83 n~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDL  162 (323)
T KOG1036|consen   83 NTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDL  162 (323)
T ss_pred             cCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEc
Confidence            99999999999999999999998899999999999999999987777788888899999999999999999999999999


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      |+++...+.++..+..+.+|+++.|+..++++++.+|.+.+.+++..+..+..+++|+||+..+.+.+.++||++++|||
T Consensus       163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence            99998888899999999999999999999999999999999999988777888999999999999999999999999999


Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEEEccccccc
Q psy11885        246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTDQETK  325 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (327)
                      -.++||||+.||.|.+||..+.+++.++.+.+..|-+++||-||..||+|+++.++.+..| .++.+.|||+.++|.+.+
T Consensus       243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~-~~~~~~i~I~~l~d~e~~  321 (323)
T KOG1036|consen  243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTP-THERNAIFIRDLTDYETK  321 (323)
T ss_pred             ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCC-CCCCCceEEEeccccccC
Confidence            9999999999999999999999999999999888999999999999999999999999988 999999999999999999


Q ss_pred             CC
Q psy11885        326 PK  327 (327)
Q Consensus       326 ~~  327 (327)
                      ||
T Consensus       322 pk  323 (323)
T KOG1036|consen  322 PK  323 (323)
T ss_pred             CC
Confidence            97

>KOG0647|consensus

Probab=100.00  E-value=6.3e-49  Score=316.63  Aligned_cols=319  Identities=36%  Similarity=0.707  Sum_probs=282.6

Q ss_pred             eeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC-CeEE--EEecCCCceeeEEEe-CCceEEEEecCCcEEE
Q psy11885          7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN-NNLR--LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKM   82 (327)
Q Consensus         7 ~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~-~~~~--~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~v   82 (327)
                      .+....++++.|.+|+|||....+++++|.|++||+|+++. +...  ....|.++|.+++|+ ++..+++|+.|+.+++
T Consensus        19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~   98 (347)
T KOG0647|consen   19 DYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL   98 (347)
T ss_pred             ceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence            45567889999999999996666788999999999999987 4543  334689999999997 7889999999999999


Q ss_pred             EEcCCCceeeeecCCccEEEEEEeCCCC--EEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeE
Q psy11885         83 FDFNTQTETVIGTHDQPIRAVEYSDEVN--CILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        83 wd~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  160 (327)
                      ||+.+++...+..|+++|.++.|-+...  .|+|||+|++|+.||+|+..++.++..|.++++.+.-...++++..++.|
T Consensus        99 wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i  178 (347)
T KOG0647|consen   99 WDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHI  178 (347)
T ss_pred             EEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcE
Confidence            9999998888899999999999987665  89999999999999999999999999999999998888889999999999


Q ss_pred             EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885        161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA  240 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  240 (327)
                      .++++++.-......+..+..+.+|++++.+.+++++|+.+|.+.|.+.+....  +..+.++||+..+.....+++|++
T Consensus       179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNs  256 (347)
T KOG0647|consen  179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNS  256 (347)
T ss_pred             EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecc
Confidence            999998876555555667888999999999999999999999999999887543  567889999875543335889999


Q ss_pred             EEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCC-CCCCCCcEEEEEc
Q psy11885        241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPP-DPIPPNNIFIRHV  319 (327)
Q Consensus       241 v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~-~~~~~~~~~~~~~  319 (327)
                      |+|||...+|+|+|.||++.+||-.....+.....+..+|++.+|+.+|+++|.+.+|++..+..- ++-+++.||++++
T Consensus       257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~~~~~I~l~~~  336 (347)
T KOG0647|consen  257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSKGHEGNNPQYKPQIFLHPV  336 (347)
T ss_pred             eEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecccccccccCCCCCCCeEEEeec
Confidence            999999999999999999999998877778888889999999999999999999999999988864 6677789999999


Q ss_pred             ccccccCC
Q psy11885        320 TDQETKPK  327 (327)
Q Consensus       320 ~~~~~~~~  327 (327)
                      ..++.|||
T Consensus       337 ~~~evK~r  344 (347)
T KOG0647|consen  337 STEEVKPR  344 (347)
T ss_pred             cccccccC
Confidence            99999987

>KOG0271|consensus

Probab=100.00  E-value=1.1e-39  Score=270.84  Aligned_cols=300  Identities=20%  Similarity=0.249  Sum_probs=229.2

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      .-|++.|.|++|+|+ +..|++|+-|.++|+||+.+... ....+|..-|.|++| +++..++||+.||+|++||-.+++
T Consensus       112 ~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~  190 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ  190 (480)
T ss_pred             CCCCCcEEEEEecCC-CceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence            457889999999995 68999999999999999999874 455679999999999 589999999999999999988776


Q ss_pred             e--eeeecCCccEEEEEEeC-----CCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEEEEecCCC-eEEEEeCCCeE
Q psy11885         90 E--TVIGTHDQPIRAVEYSD-----EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVFTMSLCGE-KFVVGTAGRKV  160 (327)
Q Consensus        90 ~--~~~~~h~~~V~~l~~~~-----~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~d~~v  160 (327)
                      +  ..+.+|...|++|+|.|     ..++|++++.||.++|||+..+.++..+..+. .+.++.+.|+ .+++++.|++|
T Consensus       191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtI  270 (480)
T KOG0271|consen  191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTI  270 (480)
T ss_pred             cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceE
Confidence            5  46889999999999964     45789999999999999999999998887654 5677777754 68899999999


Q ss_pred             EEEECCCCccceeeeccccee---------eeEEeEEeeCC-------------------------CceEEEeecCeEEE
Q psy11885        161 CIWDLRNMGYIMQRRESSLKF---------QTRCIKCFPNK-------------------------QGYVLSSIEGRAAV  206 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-------------------------~~~~~~~~~~~~~i  206 (327)
                      ++|+...+..+.....+..-.         ..+.-+|.+.+                         +.++.++.+.+..+
T Consensus       271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlfl  350 (480)
T KOG0271|consen  271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFL  350 (480)
T ss_pred             EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEE
Confidence            999987754332111111100         00111222222                         23666666666655


Q ss_pred             EEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEEC
Q psy11885        207 EYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  286 (327)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fs  286 (327)
                        |+..... +....+.+|         ..-|+.+.||||++++|+||.|..|++||.++|+.+..|++|-.+|..++||
T Consensus       351 --W~p~~~k-kpi~rmtgH---------q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws  418 (480)
T KOG0271|consen  351 --WNPFKSK-KPITRMTGH---------QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS  418 (480)
T ss_pred             --ecccccc-cchhhhhch---------hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEec
Confidence              5432211 111112233         3358999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEccccc----cCCC----CCCCCCCcEEEEEcccccc
Q psy11885        287 YDGNVLAIACSYNYE----LETP----PDPIPPNNIFIRHVTDQET  324 (327)
Q Consensus       287 pdg~~la~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~  324 (327)
                      .|.++|++++.+...    +-+.    -.+.|.+.||.+---++|.
T Consensus       419 aDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~  464 (480)
T KOG0271|consen  419 ADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ  464 (480)
T ss_pred             cCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc
Confidence            999999988765322    1111    3456899999998888875

>KOG0271|consensus

Probab=100.00  E-value=2.2e-38  Score=263.07  Aligned_cols=271  Identities=17%  Similarity=0.266  Sum_probs=216.7

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE--EEEecCCCceeeEEEe------CCceEEEEecCCcEEEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--RLKYAHSDPVLDCCFQ------DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~h~~~v~~~~~~------~~~~~~sgs~Dg~i~vw   83 (327)
                      ..|..=|.|++|+|| ++.||+|++||+|++||.++|+.  ..+.+|.+.|++++|.      +..+++|+|.||+|++|
T Consensus       154 KgH~~WVlcvawsPD-gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIW  232 (480)
T KOG0271|consen  154 KGHKNWVLCVAWSPD-GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW  232 (480)
T ss_pred             cCCccEEEEEEECCC-cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEE
Confidence            447788999999996 58999999999999999998874  4556899999999993      34588999999999999


Q ss_pred             EcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-E--EEEe-----------c--
Q psy11885         84 DFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-V--FTMS-----------L--  146 (327)
Q Consensus        84 d~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-~--~~~~-----------~--  146 (327)
                      |+..+.+. .+.+|+.+|+|++|-.+| +++|||.|++|++|+...|++..++..+.. +  ++++           +  
T Consensus       233 d~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~  311 (480)
T KOG0271|consen  233 DTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTG  311 (480)
T ss_pred             EccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccc
Confidence            99887764 578999999999998765 899999999999999988887766654321 1  1111           1  


Q ss_pred             -----------------------CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCe
Q psy11885        147 -----------------------CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGR  203 (327)
Q Consensus       147 -----------------------~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (327)
                                             .++++++|+.|.++.+|+-...+....+ ...+....+.+.|+|++..++.++.+..
T Consensus       312 ~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r-mtgHq~lVn~V~fSPd~r~IASaSFDkS  390 (480)
T KOG0271|consen  312 RKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR-MTGHQALVNHVSFSPDGRYIASASFDKS  390 (480)
T ss_pred             ccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh-hhchhhheeeEEECCCccEEEEeecccc
Confidence                                   2456999999999999987544321111 1112223577889999999999999888


Q ss_pred             EEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEE
Q psy11885        204 AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSL  283 (327)
Q Consensus       204 ~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l  283 (327)
                      +.+|.-.++.    ....+++         |+.+|+.++|+.|.++|++||.|.++++|++++.+....+.+|...|.++
T Consensus       391 VkLW~g~tGk----~lasfRG---------Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~v  457 (480)
T KOG0271|consen  391 VKLWDGRTGK----FLASFRG---------HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAV  457 (480)
T ss_pred             eeeeeCCCcc----hhhhhhh---------ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEE
Confidence            8875554443    2233343         55689999999999999999999999999999999888999999999999


Q ss_pred             EECCCCCEEEEEEcc
Q psy11885        284 CFSYDGNVLAIACSY  298 (327)
Q Consensus       284 ~fspdg~~la~~~~~  298 (327)
                      .|||||+.+++|+.+
T Consensus       458 DwspDG~rV~sggkd  472 (480)
T KOG0271|consen  458 DWSPDGQRVASGGKD  472 (480)
T ss_pred             EecCCCceeecCCCc
Confidence            999999999998754

>KOG0272|consensus

Probab=100.00  E-value=2.2e-38  Score=265.97  Aligned_cols=273  Identities=18%  Similarity=0.215  Sum_probs=226.7

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEEeC---CceEEEEecCCcEEEEEcCCC
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCFQD---AVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~~~---~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      ..+.+|..+.|+++ +..|+|||.+|.++||+..+.+ +..+.+|...|.++.|++   +..++||+.||++++|++++.
T Consensus       173 gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  173 GDTRPISGCSFSRD-SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             cCCCcceeeEeecC-CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            35578999999996 5789999999999999999877 456678999999999953   458999999999999999886


Q ss_pred             ce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecCCCeEEEEeCCCeEEEEE
Q psy11885         89 TE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        89 ~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      .+ ..+.+|...|..++|+|+|++|+|++.|.+-|+||++++..+-....+   ....++.++|..+++|+.|..-||||
T Consensus       252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD  331 (459)
T KOG0272|consen  252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD  331 (459)
T ss_pred             cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence            54 457889999999999999999999999999999999998754433332   23456677888999999999999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      +|++..++....+.  -++..+.|.|++..+++++.++...||.+....    ..+.+..|..         -|..|.|+
T Consensus       332 lRtgr~im~L~gH~--k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~----~ly~ipAH~n---------lVS~Vk~~  396 (459)
T KOG0272|consen  332 LRTGRCIMFLAGHI--KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS----ELYTIPAHSN---------LVSQVKYS  396 (459)
T ss_pred             cccCcEEEEecccc--cceeeEeECCCceEEeecCCCCcEEEeeecccc----cceecccccc---------hhhheEec
Confidence            99998776654432  245678999999999999999998885554332    2344455543         47889999


Q ss_pred             c-CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885        245 Q-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       245 p-d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                      | .|.+|+|+|.|++++||...+..+++.+.+|+..|.+|++||||+.+++++-+-.+
T Consensus       397 p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  397 PQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             ccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCcee
Confidence            9 78899999999999999999999999999999999999999999999998755443

>KOG0315|consensus

Probab=100.00  E-value=1.2e-36  Score=239.67  Aligned_cols=272  Identities=18%  Similarity=0.259  Sum_probs=212.0

Q ss_pred             CCcEEEEEECCCcEEEEECCCCeEEEEecCCC-ceeeEEE-eCCceEEEEecCCcEEEEEcCCCce---eeeecCCccEE
Q psy11885         27 SNQFLLASSWDCNVSLYDITNNNLRLKYAHSD-PVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTE---TVIGTHDQPIR  101 (327)
Q Consensus        27 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~---~~~~~h~~~V~  101 (327)
                      ..-+|+++|+|.+||+|...+|.+.....|++ .|+.+.. +++..+++++ ...||+||++++.+   ..+.+|+..|.
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceE
Confidence            34689999999999999999999888887764 6899998 4666666666 67899999998764   35778999999


Q ss_pred             EEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccc
Q psy11885        102 AVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSL  179 (327)
Q Consensus       102 ~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~  179 (327)
                      ++.|..+|++.+|||.||++|+||+|...+.+.+.....+  +.+.++...|+++..+|.|++||+++.....+.. .+.
T Consensus        88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-Pe~  166 (311)
T KOG0315|consen   88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-PED  166 (311)
T ss_pred             EEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-CCC
Confidence            9999999999999999999999999998777777665444  5556667789999999999999998764332221 222


Q ss_pred             eeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeE
Q psy11885        180 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV  259 (327)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i  259 (327)
                      ......+...|++..++.+...|...+|.+-.+.....+.   ..|+...    |..-+..+.+|||+++||++|.|.++
T Consensus       167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~---P~~k~~a----h~~~il~C~lSPd~k~lat~ssdktv  239 (311)
T KOG0315|consen  167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE---PVHKFQA----HNGHILRCLLSPDVKYLATCSSDKTV  239 (311)
T ss_pred             CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce---Ehhheec----ccceEEEEEECCCCcEEEeecCCceE
Confidence            2345677888999888888888888876654432211111   1122111    11236778999999999999999999


Q ss_pred             EEEeCCCc-eeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCCC
Q psy11885        260 NIWDGFNK-KRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPD  307 (327)
Q Consensus       260 ~iWd~~~~-~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~  307 (327)
                      +||+.++. +...++.+|+..+|.++||-||+||++|+++++...+++.
T Consensus       240 ~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  240 KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            99998877 5556778999999999999999999999999888877533

>KOG0286|consensus

Probab=100.00  E-value=6.5e-35  Score=234.73  Aligned_cols=278  Identities=20%  Similarity=0.349  Sum_probs=223.9

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|.++.|+++ .+.++++|.||.+.|||..+.. .....-...-|..|+| +.++.++.|+.|+...+|++.+..
T Consensus        52 kGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d  130 (343)
T KOG0286|consen   52 KGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRD  130 (343)
T ss_pred             cccccceeeeEecCC-cCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccc
Confidence            557789999999996 5789999999999999987755 4444445677999999 578899999999999999998541


Q ss_pred             -------eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEE--ec-CCCeEEEEeCCC
Q psy11885         90 -------ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTM--SL-CGEKFVVGTAGR  158 (327)
Q Consensus        90 -------~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~--~~-~~~~~~~~~~d~  158 (327)
                             ...+.+|++.+.+..|-+| ..|+|+|-|.+.-+||+++++.+..|..+ +.++++  ++ +++.|++|+.|+
T Consensus       131 ~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~  209 (343)
T KOG0286|consen  131 AEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDK  209 (343)
T ss_pred             ccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccc
Confidence                   2357899999999999875 56999999999999999999999988764 345554  45 578899999999


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      ..++||+|....+....  .....++.++|+|++..+++++.++..+++.+-...  +...++   |.      ....+|
T Consensus       210 ~aklWD~R~~~c~qtF~--ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~--~~a~ys---~~------~~~~gi  276 (343)
T KOG0286|consen  210 SAKLWDVRSGQCVQTFE--GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ--ELAVYS---HD------SIICGI  276 (343)
T ss_pred             ceeeeeccCcceeEeec--ccccccceEEEccCCCeeeecCCCceeEEEeecCCc--EEeeec---cC------cccCCc
Confidence            99999999875432222  223346889999999999999999988875443322  222221   11      123579


Q ss_pred             eEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCC
Q psy11885        239 NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETP  305 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~  305 (327)
                      ++++||..|++|.+|..|.++.+||.-+++++..+.+|+.+|.+|..+|||..|++| +|+..+..|
T Consensus       277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~Tg-SWDs~lriW  342 (343)
T KOG0286|consen  277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATG-SWDSTLRIW  342 (343)
T ss_pred             eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEec-chhHheeec
Confidence            999999999999999999999999999999999999999999999999999999988 555555444

>KOG0282|consensus

Probab=100.00  E-value=2.5e-36  Score=257.48  Aligned_cols=293  Identities=21%  Similarity=0.317  Sum_probs=224.1

Q ss_pred             CCCceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC-CeEE-EEecCCCceeeEEEe-CCceEEEEecCCc
Q psy11885          3 DSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN-NNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCT   79 (327)
Q Consensus         3 ~~~~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~-~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~   79 (327)
                      |...++++.. |..+|+++.|.|....+|+++|+|+.|+||++.. +++. ...+|..+|..++|+ .+..++|+|.|+.
T Consensus       203 Pkk~~~~~~g-H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  203 PKKLSHNLSG-HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             cHhheeeccC-CccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence            4455666665 6779999999997678999999999999999987 4554 445799999999995 7899999999999


Q ss_pred             EEEEEcCCCceeeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeeeeCCC-c--EEEEecCCCeEEEEe
Q psy11885         80 LKMFDFNTQTETVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNYTQPD-K--VFTMSLCGEKFVVGT  155 (327)
Q Consensus        80 i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~  155 (327)
                      +++||+++++..........+.++.|.|++ +.+++|+.|++|+.||.|+++.++++..+- .  .+.+-..+.++++.+
T Consensus       282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS  361 (503)
T ss_pred             eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence            999999999876655555678999999988 889999999999999999999998886532 2  345566788999999


Q ss_pred             CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeE
Q psy11885        156 AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI  235 (327)
Q Consensus       156 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  235 (327)
                      .|++++||+.+....+..+.... .....|+..+|+++.++.-+.++.+.++.....-.. .....+.+|......    
T Consensus       362 Ddks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~-nkkK~feGh~vaGys----  435 (503)
T KOG0282|consen  362 DDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL-NKKKRFEGHSVAGYS----  435 (503)
T ss_pred             cCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEeccccccc-CHhhhhcceeccCce----
Confidence            99999999998764332221111 122356778888887777777776665443211111 112234556554322    


Q ss_pred             EEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCC
Q psy11885        236 YPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETP  305 (327)
Q Consensus       236 ~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~  305 (327)
                         ..+.|||||++|++|+.||.+.+||..+-+.+..++.|+++|..+.|+|...--+++|+++.-+..|
T Consensus       436 ---~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw  502 (503)
T KOG0282|consen  436 ---CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW  502 (503)
T ss_pred             ---eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence               2489999999999999999999999999999999999999999999999755444444565544433

>KOG0316|consensus

Probab=100.00  E-value=1.8e-34  Score=225.73  Aligned_cols=269  Identities=21%  Similarity=0.335  Sum_probs=221.7

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      .-+++.|++++|+-+ +.|.+++|.|.+|++||...+.++..+ +|...|..++. +++..+++|+.|..+.+||+++++
T Consensus        14 ~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk   92 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK   92 (307)
T ss_pred             cccccceEEEEEccC-CCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe
Confidence            567889999999996 579999999999999999999976666 68889999887 588899999999999999999998


Q ss_pred             e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC--ceeeeeeC-CCcEEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS--RCVGNYTQ-PDKVFTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      . ..+.+|.+.|+.+.|+.+...++||+.|.++|+||.+++  ++++.+.. .+.+.++...+..++.|+.||++|.||+
T Consensus        93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydi  172 (307)
T KOG0316|consen   93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDI  172 (307)
T ss_pred             eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEe
Confidence            6 457899999999999999999999999999999999875  56777654 5667888888999999999999999999


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      |.+...    ..-+..+.+|+.+.++++..++++.+....+  +|...  .++...+++|...+..      + .++++.
T Consensus       173 R~G~l~----sDy~g~pit~vs~s~d~nc~La~~l~stlrL--lDk~t--GklL~sYkGhkn~eyk------l-dc~l~q  237 (307)
T KOG0316|consen  173 RKGTLS----SDYFGHPITSVSFSKDGNCSLASSLDSTLRL--LDKET--GKLLKSYKGHKNMEYK------L-DCCLNQ  237 (307)
T ss_pred             ecceee----hhhcCCcceeEEecCCCCEEEEeeccceeee--cccch--hHHHHHhcccccceee------e-eeeecc
Confidence            976532    1223445789999999999999999888776  44322  2334455667654322      3 357777


Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcc-eEEEEECCCCCEEEEEE
Q psy11885        246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG-ITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~-v~~l~fspdg~~la~~~  296 (327)
                      ....+++||+||.|++||+.+...+..+..+... |++|+++|.-..|.++.
T Consensus       238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~  289 (307)
T KOG0316|consen  238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT  289 (307)
T ss_pred             cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec
Confidence            8889999999999999999999988888877777 89999999766666664

>KOG0279|consensus

Probab=100.00  E-value=2.4e-33  Score=224.41  Aligned_cols=271  Identities=21%  Similarity=0.300  Sum_probs=205.3

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC-----e-EEEEecCCCceeeEEE-eCCceEEEEecCCcEEEEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-----N-LRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFD   84 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~-----~-~~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd   84 (327)
                      ..|.+.|+.++..+.+...+++++.|.++.+|++...     . .+.+.+|...|..++. +++++++|+|+|+++|+||
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD   91 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD   91 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence            5688999999999987789999999999999998653     2 3445679989998888 5899999999999999999


Q ss_pred             cCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---C--cEEEEecC--CCeEEEEeC
Q psy11885         85 FNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---D--KVFTMSLC--GEKFVVGTA  156 (327)
Q Consensus        85 ~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~--~~~~~~~~--~~~~~~~~~  156 (327)
                      +.+++. ..+.+|...|.+++|++|...++||+.|++|++|+.-. .|..+....   +  .+..++|+  ...+++++.
T Consensus        92 l~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~  170 (315)
T KOG0279|consen   92 LATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW  170 (315)
T ss_pred             ecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC
Confidence            999765 46789999999999999999999999999999999754 444443322   2  23445555  346899999


Q ss_pred             CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        157 GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       157 d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      |++|++||+++.+.......  .....+.+.++|++..++.+..++...+|.++....    .+          .+++..
T Consensus       171 DktvKvWnl~~~~l~~~~~g--h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~----ly----------sl~a~~  234 (315)
T KOG0279|consen  171 DKTVKVWNLRNCQLRTTFIG--HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN----LY----------SLEAFD  234 (315)
T ss_pred             CceEEEEccCCcchhhcccc--ccccEEEEEECCCCCEEecCCCCceEEEEEccCCce----eE----------eccCCC
Confidence            99999999998653211111  122346778899988888877777777655443321    11          123445


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC----cC-----CcceEEEEECCCCCEEEEEEcccc
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH----RY-----DTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~----~~-----~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      +|++++|+|..-.|+.+. +..|+|||+.+++.+..++    +.     ...+.+||||+||+.|..|-.++.
T Consensus       235 ~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~  306 (315)
T KOG0279|consen  235 IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV  306 (315)
T ss_pred             eEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence            799999999987777664 4559999999887766542    11     234788999999999998875544

>KOG0265|consensus

Probab=100.00  E-value=9.8e-34  Score=228.71  Aligned_cols=280  Identities=17%  Similarity=0.256  Sum_probs=216.4

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--EEEEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--LRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      ..|++.|..+.|+| ++.++|+||.|..|.+|++....  .-...+|+++|..+.| .+++.++|+|.|.+++.||.+++
T Consensus        44 ~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG  122 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG  122 (338)
T ss_pred             CCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence            55889999999999 56899999999999999986654  2344589999999999 58999999999999999999998


Q ss_pred             cee-eeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEec--CCCeEEEEeCCCeEEEEE
Q psy11885         89 TET-VIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSL--CGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        89 ~~~-~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~v~iwD  164 (327)
                      +.. ....|...|++++-+.-| ..+.||+.|+++++||.|+.++++++...-+..++.+  .++.+.+|+-|+.|++||
T Consensus       123 ~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd  202 (338)
T KOG0265|consen  123 KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWD  202 (338)
T ss_pred             eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeec
Confidence            764 467899999999855444 5667899999999999999999998877666666655  477899999999999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      +|..+..+....+  ...+..+...+.+..+...+.+..+.+|....-...++....+.+|..   ++++  ..-.++|+
T Consensus       203 ~r~~d~~~~lsGh--~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~h---nfek--nlL~csws  275 (338)
T KOG0265|consen  203 LRKNDGLYTLSGH--ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIH---NFEK--NLLKCSWS  275 (338)
T ss_pred             cccCcceEEeecc--cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchh---hhhh--hcceeecc
Confidence            9876643322221  123455666777777777777877777543322122221222222211   1111  13457999


Q ss_pred             cCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        245 QEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      |+++.+.+|+.|+.+++||....+.+..+.+|...|.+++|+|....|.+++++-
T Consensus       276 p~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk  330 (338)
T KOG0265|consen  276 PNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDK  330 (338)
T ss_pred             CCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence            9999999999999999999988888999999999999999999999999887653

>KOG0292|consensus

Probab=100.00  E-value=1.2e-34  Score=262.67  Aligned_cols=292  Identities=18%  Similarity=0.296  Sum_probs=234.6

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~   91 (327)
                      ....|-.++|+| ...+++++=..|.|++||...+.+. .+.+|.++|..++|+ ....++|||.|..|++|+..+.++.
T Consensus         8 kSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl   86 (1202)
T KOG0292|consen    8 KSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL   86 (1202)
T ss_pred             ccccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence            345788999999 4679999999999999999988864 455799999999996 6677889999999999999888775


Q ss_pred             -eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-EEEE--ecCCCeEEEEeCCCeEEEEECCC
Q psy11885         92 -VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-VFTM--SLCGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus        92 -~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~d~~v~iwD~~~  167 (327)
                       .+.+|.+.|+.+.|+++--+|+|+|.|.+||+|+.++++|+..++.+.. +++.  .+..+.++++|.|.+||+||+..
T Consensus        87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen   87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence             4779999999999999999999999999999999999999999998765 4554  44457899999999999999964


Q ss_pred             Cccceeeec------------ccc------------eee---eEEeEEeeCCCceEEEeecCeEEEEEccCCccccccee
Q psy11885        168 MGYIMQRRE------------SSL------------KFQ---TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY  220 (327)
Q Consensus       168 ~~~~~~~~~------------~~~------------~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  220 (327)
                      .+.-.....            .++            ..+   .+-++|+|+-+.++.|+.+..+.+|-+.....+..-  
T Consensus       167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD--  244 (1202)
T KOG0292|consen  167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD--  244 (1202)
T ss_pred             hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh--
Confidence            321000000            000            011   234578888888888888888888776543322111  


Q ss_pred             eeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc---
Q psy11885        221 AFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS---  297 (327)
Q Consensus       221 ~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~---  297 (327)
                      ...         +|...|.++-|||....++|.|+|++|+|||+.+.+.++++++-+.+.|.|+-+|..+++|+|..   
T Consensus       245 tcr---------gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm  315 (1202)
T KOG0292|consen  245 TCR---------GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGM  315 (1202)
T ss_pred             hhh---------cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCce
Confidence            011         34557999999999999999999999999999999999999888889999999999999999965   


Q ss_pred             --cccccCCCCCCCCCCcEEEE
Q psy11885        298 --YNYELETPPDPIPPNNIFIR  317 (327)
Q Consensus       298 --~~~~~~~~~~~~~~~~~~~~  317 (327)
                        +-+++|||.-.++.|..|-+
T Consensus       316 ~VFkleRErpa~~v~~n~LfYv  337 (1202)
T KOG0292|consen  316 IVFKLERERPAYAVNGNGLFYV  337 (1202)
T ss_pred             EEEEEcccCceEEEcCCEEEEE
Confidence              56778888888988888764

>KOG0272|consensus

Probab=100.00  E-value=7.7e-35  Score=244.68  Aligned_cols=238  Identities=19%  Similarity=0.284  Sum_probs=192.7

Q ss_pred             CCCCCCCeeEEEEecC-CCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCC
Q psy11885         11 NSPPEDGITAVKFAPN-SNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~-~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      ...|.+.|.++.|+|. ++.-||+++.||++++|++++.. +..+.+|...|..++| ++|.++.|++.|.+-|+||+++
T Consensus       213 l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t  292 (459)
T KOG0272|consen  213 LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET  292 (459)
T ss_pred             EeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccccc
Confidence            3457789999999997 36689999999999999999866 4556679999999999 5899999999999999999999


Q ss_pred             Ccee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEEEE
Q psy11885         88 QTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        88 ~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~iw  163 (327)
                      +... ...+|...|.+++|.+||..++||+.|..-|+||++++.++..+..+. .+  +.++|+|..+++|+.|++++||
T Consensus       293 k~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVW  372 (459)
T KOG0272|consen  293 KSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVW  372 (459)
T ss_pred             chhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEe
Confidence            8765 456899999999999999999999999999999999999999988754 34  4567778899999999999999


Q ss_pred             ECCCCccceeeecccceeeeEEeEEee-CCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        164 DLRNMGYIMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       164 D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                      |+|..+.+.....+.  .....+++.| .+..+++++.++...+|........+    .+-+|         ...|-++.
T Consensus       373 DLR~r~~ly~ipAH~--nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~k----sLaGH---------e~kV~s~D  437 (459)
T KOG0272|consen  373 DLRMRSELYTIPAHS--NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLK----SLAGH---------EGKVISLD  437 (459)
T ss_pred             eecccccceeccccc--chhhheEecccCCeEEEEcccCcceeeecCCCcccch----hhcCC---------ccceEEEE
Confidence            999766543332221  1234466777 45667788888888886654433222    12233         33588999


Q ss_pred             EecCCCeEEEecCCCeEEEEe
Q psy11885        243 FHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       243 ~spd~~~lasgs~dg~i~iWd  263 (327)
                      .+||++.++|+|.|++||+|.
T Consensus       438 is~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  438 ISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eccCCceEEEeccCceeeecc
Confidence            999999999999999999995

>KOG0315|consensus

Probab=100.00  E-value=2.5e-32  Score=215.36  Aligned_cols=260  Identities=18%  Similarity=0.269  Sum_probs=206.3

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe---EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN---LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      +.++.|+++...|+ +++||+++ .-.||+||+++++   +..+..|.+.|.++.|. ++..++|||.||++|+||++..
T Consensus        38 h~dsqVNrLeiTpd-k~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~  115 (311)
T KOG0315|consen   38 HPDSQVNRLEITPD-KKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL  115 (311)
T ss_pred             cCccceeeEEEcCC-cchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc
Confidence            45689999999995 57888777 4679999999876   34455799999999995 9999999999999999999987


Q ss_pred             ceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC----CCcEEEEecCCCeEEEEeCCCeEEEEE
Q psy11885         89 TETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ----PDKVFTMSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        89 ~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      .......|.++|+++..+|+...|++|..+|.|++||+....|...+--    ......+.++|..++.+...|...+|+
T Consensus       116 ~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~  195 (311)
T KOG0315|consen  116 SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWR  195 (311)
T ss_pred             ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEE
Confidence            6677778899999999999999999999999999999998876555432    233456778899999999999999999


Q ss_pred             CCCCccceee-eccc---ceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885        165 LRNMGYIMQR-RESS---LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA  240 (327)
Q Consensus       165 ~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  240 (327)
                      +-+....... +...   .........++|+.+.+++++.+..+.||..+..   .+....+.+|.         ..++.
T Consensus       196 l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~---------rWvWd  263 (311)
T KOG0315|consen  196 LLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQ---------RWVWD  263 (311)
T ss_pred             ccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc---eeeEEEeecCC---------ceEEe
Confidence            9764322111 1111   1112334567889899999999999988776643   12223334443         37999


Q ss_pred             EEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEEC
Q psy11885        241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  286 (327)
Q Consensus       241 v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fs  286 (327)
                      ++||.||.+|+|||.|+++++|++..++.+.+..+|.++-.|++..
T Consensus       264 c~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  264 CAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             eeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            9999999999999999999999999999999999999887777764

>KOG0273|consensus

Probab=100.00  E-value=9.6e-33  Score=234.97  Aligned_cols=270  Identities=14%  Similarity=0.233  Sum_probs=214.2

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC------CeE--EEEe-------cCCCceeeEEEe-CCceEEEEecC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN------NNL--RLKY-------AHSDPVLDCCFQ-DAVHSFSGGLD   77 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~------~~~--~~~~-------~h~~~v~~~~~~-~~~~~~sgs~D   77 (327)
                      |+.+|.+.+|+|....+|++++.|-+.++|++..      .++  +...       .....|++++|+ +|..|++|+.|
T Consensus       177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~  256 (524)
T KOG0273|consen  177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED  256 (524)
T ss_pred             CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence            8889999999997655899999999999999864      111  1111       123568999995 89999999999


Q ss_pred             CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE-EEEec-CCCeEEEEe
Q psy11885         78 CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV-FTMSL-CGEKFVVGT  155 (327)
Q Consensus        78 g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~  155 (327)
                      |.+|+|+...+....+..|.+||.+|.|+..|.+|++++.|+++-+||..++.+.+.+..+... ..+.+ +.+.|++++
T Consensus       257 G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~  336 (524)
T KOG0273|consen  257 GEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSS  336 (524)
T ss_pred             cEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecC
Confidence            9999999988887888999999999999999999999999999999999998887777654333 33444 356799999


Q ss_pred             CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeE
Q psy11885        156 AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI  235 (327)
Q Consensus       156 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  235 (327)
                      .|+.|+++-+....++.....  +.....++.++|.+..+++++.+++..+|.......         .|.+..    |-
T Consensus       337 td~~i~V~kv~~~~P~~t~~G--H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~---------~~~l~~----Hs  401 (524)
T KOG0273|consen  337 TDGCIHVCKVGEDRPVKTFIG--HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS---------VHDLQA----HS  401 (524)
T ss_pred             CCceEEEEEecCCCcceeeec--ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc---------hhhhhh----hc
Confidence            999999998876554433222  444568899999999888899999888855432221         122211    11


Q ss_pred             EEeeEEEEecCC---------CeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        236 YPVNAISFHQEY---------NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       236 ~~v~~v~~spd~---------~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      ..|..+.|+|+|         ..+++++.|++|++||+..+..+..+.+|..+|.+|+|||+|+|||+|+-+
T Consensus       402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d  473 (524)
T KOG0273|consen  402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD  473 (524)
T ss_pred             cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCC
Confidence            236677777764         579999999999999999999999999999999999999999999999644

>KOG0263|consensus

Probab=100.00  E-value=1.4e-33  Score=253.60  Aligned_cols=242  Identities=25%  Similarity=0.397  Sum_probs=200.6

Q ss_pred             CCceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--------------------------------EE
Q psy11885          4 SKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--------------------------------LR   51 (327)
Q Consensus         4 ~~~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--------------------------------~~   51 (327)
                      +.+-++....+ .+++|+.|+++ ..+||.|-.|..|++|.+...+                                ..
T Consensus       368 Sic~YT~~nt~-~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~  445 (707)
T KOG0263|consen  368 SICMYTFHNTY-QGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR  445 (707)
T ss_pred             cEEEEEEEEcC-CcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence            33344444433 57999999996 4678888889999999886311                                12


Q ss_pred             EEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCceee-eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC
Q psy11885         52 LKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETV-IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS  129 (327)
Q Consensus        52 ~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~  129 (327)
                      ...+|.++|..+.| ++...|+|+|.|+++|+|.+.+....+ ..+|..||+.+.|+|-|-+++|||.|++.|+|.....
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~  525 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN  525 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence            35689999999999 578899999999999999999987654 5699999999999999999999999999999999888


Q ss_pred             ceeeeeeC---CCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEE
Q psy11885        130 RCVGNYTQ---PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAV  206 (327)
Q Consensus       130 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  206 (327)
                      .+++.+..   ...+..++|+..++++|+.|++||+||+.++..                                 +++
T Consensus       526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~---------------------------------VRi  572 (707)
T KOG0263|consen  526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS---------------------------------VRI  572 (707)
T ss_pred             CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE---------------------------------EEE
Confidence            87776654   345778889999999999999999999876421                                 011


Q ss_pred             EEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEEC
Q psy11885        207 EYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  286 (327)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fs  286 (327)
                                     |.+         |..+|.+++|||+|++||+|++||.|++||+.+++.+.++.+|.+.|.+|.||
T Consensus       573 ---------------F~G---------H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS  628 (707)
T KOG0263|consen  573 ---------------FTG---------HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFS  628 (707)
T ss_pred             ---------------ecC---------CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEe
Confidence                           112         23479999999999999999999999999999999999999998889999999


Q ss_pred             CCCCEEEEEEccccccCC
Q psy11885        287 YDGNVLAIACSYNYELET  304 (327)
Q Consensus       287 pdg~~la~~~~~~~~~~~  304 (327)
                      .||..||+|+.+...+-+
T Consensus       629 ~dg~vLasgg~DnsV~lW  646 (707)
T KOG0263|consen  629 RDGNVLASGGADNSVRLW  646 (707)
T ss_pred             cCCCEEEecCCCCeEEEE
Confidence            999999999887655555

>KOG0285|consensus

Probab=100.00  E-value=3.9e-32  Score=224.22  Aligned_cols=269  Identities=18%  Similarity=0.311  Sum_probs=208.8

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEeC-CceEEEEecCCcEEEEEcCCC
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQD-AVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~~-~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      -+-|.+=|+|+++.| +++++++|++|++|+|||+.++++.... +|-..|..+++++ -.++++++.|+.|+.||++.+
T Consensus       147 i~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n  225 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN  225 (460)
T ss_pred             hhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence            356778899999999 6899999999999999999999986655 5999999999974 569999999999999999987


Q ss_pred             cee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEEEE--ecCCCeEEEEeCCCeEEEEE
Q psy11885         89 TET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVFTM--SLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        89 ~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~d~~v~iwD  164 (327)
                      +.. -..+|-..|.+|+.+|.-+.|++|+.|.++|+||+|++..+..+..+. .+..+  .+....+++|+.|++||+||
T Consensus       226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD  305 (460)
T KOG0285|consen  226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD  305 (460)
T ss_pred             hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence            653 367899999999999999999999999999999999999888887543 33333  33356799999999999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      ++.++.+.....+  ....+++..+|....++.++.+....   |+.....  ....+.         +|..-+++++..
T Consensus       306 l~agkt~~tlt~h--kksvral~lhP~e~~fASas~dnik~---w~~p~g~--f~~nls---------gh~~iintl~~n  369 (460)
T KOG0285|consen  306 LRAGKTMITLTHH--KKSVRALCLHPKENLFASASPDNIKQ---WKLPEGE--FLQNLS---------GHNAIINTLSVN  369 (460)
T ss_pred             eccCceeEeeecc--cceeeEEecCCchhhhhccCCcccee---ccCCccc--hhhccc---------cccceeeeeeec
Confidence            9988765433222  22357788888877777777655433   3322111  111112         233357888887


Q ss_pred             cCCCeEEEecCCCeEEEEeCCCceeeeecC--------cCCcceEEEEECCCCCEEEEEEc
Q psy11885        245 QEYNTFATGGSDGYVNIWDGFNKKRLCQFH--------RYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~~~~~~~~~~--------~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      .|+ .+++|+++|.+.+||..+|...+.+.        ..+.+|.+.+|...|..|+++..
T Consensus       370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea  429 (460)
T KOG0285|consen  370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA  429 (460)
T ss_pred             cCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccC
Confidence            776 88899999999999998876544331        23457999999999999998854

>KOG0318|consensus

Probab=100.00  E-value=2e-31  Score=229.79  Aligned_cols=292  Identities=16%  Similarity=0.266  Sum_probs=214.2

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe----cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY----AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      |..=|+|++|+|+ +.+++++|.||+|.+||-.+++....+    +|++.|.++.|+ ++.+++|+|.|.++|+||+.++
T Consensus       189 HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~  267 (603)
T KOG0318|consen  189 HSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN  267 (603)
T ss_pred             cccceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc
Confidence            4467999999996 578999999999999999998854333    699999999995 8999999999999999997642


Q ss_pred             c--------------------------------------------eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEE
Q psy11885         89 T--------------------------------------------ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMW  124 (327)
Q Consensus        89 ~--------------------------------------------~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lw  124 (327)
                      .                                            ...+.+|...|++|..++++++|+||++||.|.-|
T Consensus       268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W  347 (603)
T KOG0318|consen  268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW  347 (603)
T ss_pred             ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence            1                                            01234689999999999999999999999999999


Q ss_pred             eCCCCceeeeee--CCCcEEEEecCC-CeEEEEeCCCeEEEEECCCCccceee----e----------------------
Q psy11885        125 DPRSSRCVGNYT--QPDKVFTMSLCG-EKFVVGTAGRKVCIWDLRNMGYIMQR----R----------------------  175 (327)
Q Consensus       125 dl~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~d~~v~iwD~~~~~~~~~~----~----------------------  175 (327)
                      |..++.+-....  +...+..+.... ..+++.+.|.++++.++.....-...    .                      
T Consensus       348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~  427 (603)
T KOG0318|consen  348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD  427 (603)
T ss_pred             ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence            998876544321  234456665554 67889999999999987533211100    0                      


Q ss_pred             -----------cccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        176 -----------ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       176 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                                 ...+..+..+++.+|+++..+++..++.+.++-+........  ..         ..+|..+++++++|
T Consensus       428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee--~~---------~~~h~a~iT~vayS  496 (603)
T KOG0318|consen  428 IVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE--AK---------LLEHRAAITDVAYS  496 (603)
T ss_pred             EEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce--ee---------eecccCCceEEEEC
Confidence                       001112334566777777777777777766654433221110  00         12344579999999


Q ss_pred             cCCCeEEEecCCCeEEEEeCCCceeeeecCc-CCcceEEEEECCCCCEEEEEEc----cccccCCCCCCCCCCcEEEE
Q psy11885        245 QEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-YDTGITSLCFSYDGNVLAIACS----YNYELETPPDPIPPNNIFIR  317 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~~~~~~~~~~~-~~~~v~~l~fspdg~~la~~~~----~~~~~~~~~~~~~~~~~~~~  317 (327)
                      ||+.+||+|...+.|-+||..+.+....... |...|.+|+|||+.+++|+|+-    ..|.+.+|...+..++-|.-
T Consensus       497 pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~  574 (603)
T KOG0318|consen  497 PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLG  574 (603)
T ss_pred             CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccccc
Confidence            9999999999999999999998876444444 7778999999999999999975    35666676555555554433

>KOG0286|consensus

Probab=100.00  E-value=1.4e-31  Score=215.58  Aligned_cols=234  Identities=21%  Similarity=0.327  Sum_probs=191.0

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCC--e-----EEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCC
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNN--N-----LRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~--~-----~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      .=|..+||+| ++.++|.||.|+...||++...  +     .+.+.+|.+-+.+|.|.+..+++|+|-|.+..+||++++
T Consensus        98 ~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g  176 (343)
T KOG0286|consen   98 SWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG  176 (343)
T ss_pred             eeEEEEEECC-CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc
Confidence            3578999999 5689999999999999999854  2     123457998899999999999999999999999999998


Q ss_pred             cee-eeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeeeCCC---cEEEEecCCCeEEEEeCCCeEEEE
Q psy11885         89 TET-VIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD---KVFTMSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        89 ~~~-~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iw  163 (327)
                      +.. .+.+|.+.|.+|.++| +++.++||+.|+..++||+|.+.+.++|..+.   ..+.+.|+|..|++|+.|++.|+|
T Consensus       177 ~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRly  256 (343)
T KOG0286|consen  177 QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLY  256 (343)
T ss_pred             eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEE
Confidence            764 5789999999999999 99999999999999999999999999998754   346778899999999999999999


Q ss_pred             ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      |+|....+..............++|+..+..+.++-.+....+  ||+-...  ....+.+|..         .|.|+..
T Consensus       257 DlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~v--WDtlk~e--~vg~L~GHeN---------RvScl~~  323 (343)
T KOG0286|consen  257 DLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNV--WDTLKGE--RVGVLAGHEN---------RVSCLGV  323 (343)
T ss_pred             eecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeE--eeccccc--eEEEeeccCC---------eeEEEEE
Confidence            9998765433333334445678888888877777766666666  5543321  2223344543         5899999


Q ss_pred             ecCCCeEEEecCCCeEEEEe
Q psy11885        244 HQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd  263 (327)
                      +|||..++|||.|.++|||.
T Consensus       324 s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  324 SPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCCCcEEEecchhHheeecC
Confidence            99999999999999999994

>KOG1446|consensus

Probab=100.00  E-value=3.1e-30  Score=210.14  Aligned_cols=273  Identities=17%  Similarity=0.259  Sum_probs=212.7

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEE-eCCceEEEEec--CCcEEEEEcCCCc
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCF-QDAVHSFSGGL--DCTLKMFDFNTQT   89 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~-~~~~~~~sgs~--Dg~i~vwd~~~~~   89 (327)
                      ..+.|+++.|+++ +.+|++++.|.+++|||..+++... ...++..+..++| +....++.++.  |.+||..++..++
T Consensus        13 ~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk   91 (311)
T KOG1446|consen   13 TNGKINSLDFSDD-GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK   91 (311)
T ss_pred             CCCceeEEEecCC-CCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence            4468999999995 5788999999999999999988544 4456667888888 45666665555  8999999999887


Q ss_pred             ee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885         90 ET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTMSLCGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus        90 ~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~iwD~~~  167 (327)
                      .. .+.+|...|.+|+.+|-++.++|++.|++||+||++..+|...+... ..+.++++.|-.+|++...+.|+++|+|.
T Consensus        92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen   92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence            64 57899999999999999999999999999999999999988877654 45678899999999998888999999998


Q ss_pred             Ccc-ceeeecc--cceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        168 MGY-IMQRRES--SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       168 ~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      .+. ......-  ........+.|+++++.+++++..+...+...-.+.    +...+..+....     ..+ -..+|+
T Consensus       172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~----~~~tfs~~~~~~-----~~~-~~a~ft  241 (311)
T KOG1446|consen  172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT----VKSTFSGYPNAG-----NLP-LSATFT  241 (311)
T ss_pred             cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc----EeeeEeeccCCC-----Ccc-eeEEEC
Confidence            642 2111111  112345778999999999988887766553333332    222333332211     012 356899


Q ss_pred             cCCCeEEEecCCCeEEEEeCCCceeeeecCc-CCcceEEEEECCCCCEEEEEEc
Q psy11885        245 QEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-YDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~~~~~~~~~~~-~~~~v~~l~fspdg~~la~~~~  297 (327)
                      ||++++++|+.||+|.+|++++++.+..+.+ +..++.++.|+|---++|++++
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence            9999999999999999999999999998887 5778999999998888888865

>KOG0279|consensus

Probab=100.00  E-value=5e-31  Score=211.11  Aligned_cols=243  Identities=20%  Similarity=0.305  Sum_probs=183.7

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~   91 (327)
                      |+-.|+.+..+++ +++.++++.|+++++||+.+++. +.+.+|..-|.+++|+ ++.+++|||.|.+|++|++-.....
T Consensus        62 HsH~v~dv~~s~d-g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~  140 (315)
T KOG0279|consen   62 HSHFVSDVVLSSD-GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY  140 (315)
T ss_pred             cceEecceEEccC-CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE
Confidence            5568999999995 57999999999999999999874 5667899999999995 8889999999999999998776555


Q ss_pred             eeec--CCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCCceeeeeeCCCc---EEEEecCCCeEEEEeCCCeEEEEE
Q psy11885         92 VIGT--HDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK---VFTMSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        92 ~~~~--h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      .+..  |..-|.+++|+|.  .-.|+++++|++|++||+++-+....+..+..   ...++++|...++|+.||.+.+||
T Consensus       141 t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd  220 (315)
T KOG0279|consen  141 TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD  220 (315)
T ss_pred             EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence            4443  3678999999997  57899999999999999998887777765543   356788999999999999999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      ++..+.+... .  .....+.++|.|+..- ++...+..+.||..+...........+.+...+..    .....+++|+
T Consensus       221 L~~~k~lysl-~--a~~~v~sl~fspnryw-L~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~----~~~clslaws  292 (315)
T KOG0279|consen  221 LNEGKNLYSL-E--AFDIVNSLCFSPNRYW-LCAATATSIKIWDLESKAVVEELKLDGIGPSSKAG----DPICLSLAWS  292 (315)
T ss_pred             ccCCceeEec-c--CCCeEeeEEecCCcee-EeeccCCceEEEeccchhhhhhccccccccccccC----CcEEEEEEEc
Confidence            9988764222 1  2223567778887544 33444445677665554433222222111111100    1125679999


Q ss_pred             cCCCeEEEecCCCeEEEEeCC
Q psy11885        245 QEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~  265 (327)
                      +||+.|..|-.|+.|++|.+.
T Consensus       293 ~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  293 ADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             CCCcEEEeeecCCcEEEEEee
Confidence            999999999999999999764

>KOG0266|consensus

Probab=100.00  E-value=5.3e-31  Score=240.50  Aligned_cols=276  Identities=20%  Similarity=0.323  Sum_probs=219.4

Q ss_pred             cCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--EE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885         10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--LR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        10 ~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~   85 (327)
                      ....+...|+++.|+++ +.++++++.|+.+++|+....+  +. ...+|...|..++|+ ++..+++++.|++||+||+
T Consensus       154 ~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  154 LAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             ecccccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence            34445689999999996 4679999999999999997666  33 335799999999995 7789999999999999999


Q ss_pred             CCC-ce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc---EEEEecCCCeEEEEeCCCeE
Q psy11885         86 NTQ-TE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK---VFTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        86 ~~~-~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~v  160 (327)
                      ... .. ..+.+|...|.+++|+|+++++++|+.|++||+||+++++++..+..+..   ..++..++..+++++.|+.|
T Consensus       233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i  312 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTI  312 (456)
T ss_pred             cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccE
Confidence            444 33 56789999999999999999999999999999999999999998876543   34566778899999999999


Q ss_pred             EEEECCCCccc-eeeeccccee-eeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        161 CIWDLRNMGYI-MQRRESSLKF-QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       161 ~iwD~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      ++||+.++... .......... ...++.++|++..++++..++...+|.+.....    ...+..|...      ...+
T Consensus       313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~----~~~~~~~~~~------~~~~  382 (456)
T KOG0266|consen  313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS----VGTYTGHSNL------VRCI  382 (456)
T ss_pred             EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc----eeeecccCCc------ceeE
Confidence            99999987731 1111111111 457788899999999999988888866553322    1222333221      1234


Q ss_pred             eEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcC-CcceEEEEECCCCCEEEEEE
Q psy11885        239 NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY-DTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~-~~~v~~l~fspdg~~la~~~  296 (327)
                      .+..+++.+..+.+|+.|+.|++||..++..++.+.+| ...+..++++|...++++++
T Consensus       383 ~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  383 FSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             ecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence            55566889999999999999999999999889999999 77899999999999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.4e-30  Score=250.47  Aligned_cols=276  Identities=16%  Similarity=0.247  Sum_probs=202.2

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC----e----EEEEecCCCceeeEEEe--CCceEEEEecCCcEEEE
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN----N----LRLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~----~----~~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vw   83 (327)
                      |.+.|++++|+|+ +.+||+||.|++|+|||....    .    ......+...+.+++|.  .+.++++++.||+|++|
T Consensus       482 ~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW  560 (793)
T PLN00181        482 SSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW  560 (793)
T ss_pred             CCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence            6788999999995 579999999999999997542    1    11223345678888984  46789999999999999


Q ss_pred             EcCCCce-eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEec---CCCeEEEEeCCC
Q psy11885         84 DFNTQTE-TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSL---CGEKFVVGTAGR  158 (327)
Q Consensus        84 d~~~~~~-~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~  158 (327)
                      |+.++.. ..+..|...|.+++|+| ++.+|++|+.|++|++||++++.++..+.....+.++.+   ++..+++|+.|+
T Consensus       561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg  640 (793)
T PLN00181        561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADH  640 (793)
T ss_pred             ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCC
Confidence            9987654 35678999999999996 789999999999999999999988887776555555433   478899999999


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcc--cccceeeeeeeeeccCCeeeEE
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE--MQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      .|++||+++.+...... ..+.....++.+. ++..+++++.++.+.+|.......  .......+..|         ..
T Consensus       641 ~I~iwD~~~~~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh---------~~  709 (793)
T PLN00181        641 KVYYYDLRNPKLPLCTM-IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH---------TN  709 (793)
T ss_pred             eEEEEECCCCCccceEe-cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC---------CC
Confidence            99999998754221111 1112233556664 556778888888877755432110  00111122222         23


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee-------------cCcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ-------------FHRYDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~-------------~~~~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                      .+++++|+|++++||+|+.|++|++|+......+..             ...+...|.+++|+|+|.+|++|++++..
T Consensus       710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I  787 (793)
T PLN00181        710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI  787 (793)
T ss_pred             CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence            578899999999999999999999999765433211             12344569999999999999999865543

>KOG0295|consensus

Probab=100.00  E-value=2.1e-31  Score=220.30  Aligned_cols=272  Identities=18%  Similarity=0.282  Sum_probs=214.1

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..+...|+.+-|+|+ ..++++++.|.+|++||..++++ ....+|.+.+..+.|. .+.+++++|.|-.+++||+++..
T Consensus       105 ~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~  183 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF  183 (406)
T ss_pred             hccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH
Confidence            447789999999994 56888899999999999999996 4456899999999995 78899999999999999998642


Q ss_pred             e--eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc---EEEEecCCCeEEEEeCCCeEEEEE
Q psy11885         90 E--TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK---VFTMSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        90 ~--~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      .  ..+.+|+..|.+++|-|.|++++|++.|.+|+.|++.++-|+.++..+..   .+.+..+|..+++++.|.+|++|-
T Consensus       184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~  263 (406)
T KOG0295|consen  184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV  263 (406)
T ss_pred             HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence            2  34568899999999999999999999999999999999999999987653   455556677899999999999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCC---------------CceEEEeecCeEEEEEccCCcccccceeeeeeeeecc
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNK---------------QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE  229 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~  229 (327)
                      +.+++.-...+.+++  +..|+++.|..               +.+..++-++.+.+  |+....  .....+.+|    
T Consensus       264 ~~t~~~k~~lR~hEh--~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~--wdv~tg--~cL~tL~gh----  333 (406)
T KOG0295|consen  264 VATKQCKAELREHEH--PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI--WDVSTG--MCLFTLVGH----  333 (406)
T ss_pred             eccchhhhhhhcccc--ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE--EeccCC--eEEEEEecc----
Confidence            988743222233333  33455544321               12333444444444  554433  222333333    


Q ss_pred             CCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        230 DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       230 ~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                           ...|..++|||.|++|+|..+|+++++||+.+++.+..+..|+--|++++|..+.-++++|+-+.
T Consensus       334 -----dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdq  398 (406)
T KOG0295|consen  334 -----DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQ  398 (406)
T ss_pred             -----cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccc
Confidence                 34799999999999999999999999999999999999998988899999999999999887544

>KOG0296|consensus

Probab=100.00  E-value=2.9e-30  Score=213.65  Aligned_cols=274  Identities=18%  Similarity=0.284  Sum_probs=207.1

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.++|.+++.+| ...+++|||.|....||+..+++. ....+|++.|.++.|+ ++.+++||+.+|.|++|+..++.
T Consensus        61 ~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~  139 (399)
T KOG0296|consen   61 DKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG  139 (399)
T ss_pred             hhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence            45778999999999 578999999999999999999984 4455899999999995 99999999999999999999886


Q ss_pred             eee-eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC---cEEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         90 ETV-IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD---KVFTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        90 ~~~-~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      ... +...-..+.-++|+|-+..|+.|+.||.+.+|.+.+....+.+..+.   ..-.+.++|++++++..|++|++||.
T Consensus       140 ~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~  219 (399)
T KOG0296|consen  140 EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNP  219 (399)
T ss_pred             eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEec
Confidence            643 33334567788999999999999999999999998866556665543   34457788999999999999999999


Q ss_pred             CCCccceeeeccc-cee------------------------------------------------eeEEeEEeeC---CC
Q psy11885        166 RNMGYIMQRRESS-LKF------------------------------------------------QTRCIKCFPN---KQ  193 (327)
Q Consensus       166 ~~~~~~~~~~~~~-~~~------------------------------------------------~~~~~~~~~~---~~  193 (327)
                      ++.+..+...... ...                                                ...++.+.|.   -+
T Consensus       220 ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp  299 (399)
T KOG0296|consen  220 KTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP  299 (399)
T ss_pred             CCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc
Confidence            9876543322100 000                                                0001111111   12


Q ss_pred             ceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885        194 GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       194 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~  273 (327)
                      ..++++.+|.+.||.+....    ++     |.     ++|-.+|..+.|-+ ..+|++++.||.|+.||.++|+.+..+
T Consensus       300 L~A~G~vdG~i~iyD~a~~~----~R-----~~-----c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y  364 (399)
T KOG0296|consen  300 LAACGSVDGTIAIYDLAAST----LR-----HI-----CEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY  364 (399)
T ss_pred             hhhcccccceEEEEecccch----hh-----ee-----ccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE
Confidence            33445555655553332211    00     11     12334688899988 789999999999999999999999999


Q ss_pred             CcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885        274 HRYDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       274 ~~~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                      .+|..+|.+++++|+++++++++.++..
T Consensus       365 ~GH~~~Il~f~ls~~~~~vvT~s~D~~a  392 (399)
T KOG0296|consen  365 TGHQMGILDFALSPQKRLVVTVSDDNTA  392 (399)
T ss_pred             ecCchheeEEEEcCCCcEEEEecCCCeE
Confidence            9999999999999999999999866543

>KOG0291|consensus

Probab=100.00  E-value=4.7e-30  Score=229.64  Aligned_cols=269  Identities=20%  Similarity=0.317  Sum_probs=205.8

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEEecC-CcEEEEEcCCCcee-
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLD-CTLKMFDFNTQTET-   91 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~D-g~i~vwd~~~~~~~-   91 (327)
                      ..|+|.+|++ +-..|++|=..|...+|.+....+.... -...+|..++|+ .|..++.|+.. |.+-+|+.++.... 
T Consensus       266 ~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl  344 (893)
T KOG0291|consen  266 SKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL  344 (893)
T ss_pred             cceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee
Confidence            6899999999 5678999988999999999888865444 345688889984 78888877654 89999999877653 


Q ss_pred             eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc---EEEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885         92 VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK---VFTMSLCGEKFVVGTAGRKVCIWDLRNM  168 (327)
Q Consensus        92 ~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~v~iwD~~~~  168 (327)
                      -.++|-..+.+++|+|||+++++|+.||+|++||.+++-|+.++..+..   .+.+...++.+++++.||+||.||+...
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence            3568999999999999999999999999999999999999999987543   3456667999999999999999999865


Q ss_pred             ccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC
Q psy11885        169 GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN  248 (327)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~  248 (327)
                      .. ......+.+.|..|++..|.+....+|+. ..-.|..|.....  +..-.+.+|         -.||.+++|+|+++
T Consensus       425 rN-fRTft~P~p~QfscvavD~sGelV~AG~~-d~F~IfvWS~qTG--qllDiLsGH---------EgPVs~l~f~~~~~  491 (893)
T KOG0291|consen  425 RN-FRTFTSPEPIQFSCVAVDPSGELVCAGAQ-DSFEIFVWSVQTG--QLLDILSGH---------EGPVSGLSFSPDGS  491 (893)
T ss_pred             ce-eeeecCCCceeeeEEEEcCCCCEEEeecc-ceEEEEEEEeecC--eeeehhcCC---------CCcceeeEEccccC
Confidence            42 22333444556677777777655444444 3334444543221  122233444         35899999999999


Q ss_pred             eEEEecCCCeEEEEeCCCcee-eeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        249 TFATGGSDGYVNIWDGFNKKR-LCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       249 ~lasgs~dg~i~iWd~~~~~~-~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      .|||||.|.|||+||+..... +..+ .+...+..++|+|||+.||+++.++
T Consensus       492 ~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  492 LLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             eEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecc
Confidence            999999999999999876532 3333 2445689999999999999998763

>KOG0284|consensus

Probab=100.00  E-value=8e-32  Score=225.67  Aligned_cols=270  Identities=23%  Similarity=0.314  Sum_probs=209.0

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCceee
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETV   92 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~~   92 (327)
                      +-.|..+.|.|+ ++.|++|+..|.+.+|+...-. .....+|..+|.++.| +++.+++||+.+|.||+|+.+-+..+.
T Consensus        96 kc~V~~v~WtPe-GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTPE-GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             ccceeeEEEcCC-CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            357999999995 5789999999999999985543 2334689999999999 589999999999999999988766666


Q ss_pred             eecC-CccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885         93 IGTH-DQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVCIWDLRNM  168 (327)
Q Consensus        93 ~~~h-~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~  168 (327)
                      +..| ...|++++|+|....++|++.||+|+|||....+....+..++ .+  ..+.+....+++++.|+.|++||.|++
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg  254 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG  254 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence            6555 4899999999999999999999999999998877666666543 23  444455557999999999999999998


Q ss_pred             ccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC-C
Q psy11885        169 GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-Y  247 (327)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd-~  247 (327)
                      ..+.....  +......+.|+++++.+++++.+....+  +|... . +....++.|+.         .|.+++|||- -
T Consensus       255 ~cl~tlh~--HKntVl~~~f~~n~N~Llt~skD~~~kv--~DiR~-m-kEl~~~r~Hkk---------dv~~~~WhP~~~  319 (464)
T KOG0284|consen  255 SCLATLHG--HKNTVLAVKFNPNGNWLLTGSKDQSCKV--FDIRT-M-KELFTYRGHKK---------DVTSLTWHPLNE  319 (464)
T ss_pred             chhhhhhh--ccceEEEEEEcCCCCeeEEccCCceEEE--EehhH-h-HHHHHhhcchh---------hheeeccccccc
Confidence            76543322  2223456788999988888888877776  44431 1 11222334432         4889999994 4


Q ss_pred             CeEEEecCCCeEEEEeCCCceeeeec-CcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        248 NTFATGGSDGYVNIWDGFNKKRLCQF-HRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       248 ~~lasgs~dg~i~iWd~~~~~~~~~~-~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      ++|.+|+.||.|..|.+...+++..+ .+|+..||+|+|+|-|-.||+|+.+..
T Consensus       320 ~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t  373 (464)
T KOG0284|consen  320 SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRT  373 (464)
T ss_pred             cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcc
Confidence            67889999999999998754555554 578889999999999999999876543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=5.3e-29  Score=212.99  Aligned_cols=271  Identities=24%  Similarity=0.381  Sum_probs=209.1

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .|.+.|++++|+|+ +.+|++++.|+.|++|+..+++. .....|...+..+.|. ++..+++++.|+.|++||++++..
T Consensus         7 ~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~   85 (289)
T cd00200           7 GHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC   85 (289)
T ss_pred             ccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc
Confidence            46789999999995 57899999999999999988764 4445688888888885 566899999999999999987543


Q ss_pred             -eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEE--ecCCCeEEEEeCCCeEEEEECC
Q psy11885         91 -TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTM--SLCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        91 -~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~d~~v~iwD~~  166 (327)
                       ..+..|...|.++.|+++++.+++++.|+.|++||+++++....+..+ ..+.++  .+.+..+++++.++.|++||++
T Consensus        86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  165 (289)
T cd00200          86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR  165 (289)
T ss_pred             eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence             456678889999999999888888888999999999988877776633 334444  4445667777679999999998


Q ss_pred             CCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC
Q psy11885        167 NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE  246 (327)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd  246 (327)
                      +.+......  .......++.+.+++..+++++.++.+.++........    ..+..|         ..++.+++|+|+
T Consensus       166 ~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~----~~~~~~---------~~~i~~~~~~~~  230 (289)
T cd00200         166 TGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL----GTLRGH---------ENGVNSVAFSPD  230 (289)
T ss_pred             ccccceeEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCcee----cchhhc---------CCceEEEEEcCC
Confidence            665432222  12223567788888777888877777776554332211    111111         126889999999


Q ss_pred             CCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       247 ~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      +.++++++.||.|++||..+++.+..+..|...|.+++|+|++++|++++.++
T Consensus       231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  283 (289)
T cd00200         231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG  283 (289)
T ss_pred             CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC
Confidence            98999998899999999998888888888888999999999999999987554

>KOG0288|consensus

Probab=99.98  E-value=7e-32  Score=226.36  Aligned_cols=275  Identities=19%  Similarity=0.270  Sum_probs=208.7

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--EE-EEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcC
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--LR-LKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--~~-~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      .+.|++++..+.|-++ ...|++||.|..|++|++..++  .+ .+.+..++++++.| +++.++++++.|+.+++|+++
T Consensus       171 ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd  249 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD  249 (459)
T ss_pred             hhccccccceeEEccC-cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence            3568899999999995 3689999999999999998877  22 33455678999999 789999999999999999998


Q ss_pred             CCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         87 TQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        87 ~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      ..+. ..+.+|++.|+++.|......+++|+.|.+|++||++...|..++.....+..+...+..+++|-.|++||+||+
T Consensus       250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~  329 (459)
T KOG0288|consen  250 SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDI  329 (459)
T ss_pred             chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEec
Confidence            8765 467789999999999877666999999999999999998888876655555555555667888999999999999


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      |+.......   .+......+...+++..+++++-++...+  .|.....  +     .|..+..++-..+..+.+.|||
T Consensus       330 Rs~~~~~sv---~~gg~vtSl~ls~~g~~lLsssRDdtl~v--iDlRt~e--I-----~~~~sA~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  330 RSADKTRSV---PLGGRVTSLDLSMDGLELLSSSRDDTLKV--IDLRTKE--I-----RQTFSAEGFKCASDWTRVVFSP  397 (459)
T ss_pred             cCCceeeEe---ecCcceeeEeeccCCeEEeeecCCCceee--eeccccc--E-----EEEeeccccccccccceeEECC
Confidence            986543222   22222345555566655566655555544  3332211  1     1222222222223478899999


Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeecCcCCc--ceEEEEECCCCCEEEEEEcc
Q psy11885        246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT--GITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~--~v~~l~fspdg~~la~~~~~  298 (327)
                      +++|+|+||.||.|+||++.+++....++....  .|++++|+|.|+.|++++.+
T Consensus       398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~  452 (459)
T KOG0288|consen  398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ  452 (459)
T ss_pred             CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCC
Confidence            999999999999999999999998877765444  59999999999999988653

>KOG0273|consensus

Probab=99.98  E-value=9.3e-30  Score=216.83  Aligned_cols=268  Identities=20%  Similarity=0.321  Sum_probs=205.4

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~   91 (327)
                      +....||+++|+.+ +.+||+|+.||.++||+..++....+-.|++||.++.|. ++.+++|++.|+++.+||.-++...
T Consensus       233 ~~nkdVT~L~Wn~~-G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~  311 (524)
T KOG0273|consen  233 PSNKDVTSLDWNND-GTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK  311 (524)
T ss_pred             CccCCcceEEecCC-CCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence            34478999999985 579999999999999999777766666799999999996 8999999999999999999887654


Q ss_pred             -eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEEec--CCCeEEEEeCCCeEEEEECCC
Q psy11885         92 -VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTMSL--CGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus        92 -~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~d~~v~iwD~~~  167 (327)
                       .+.-|+.+...+.|-.+ ..+++.+.|+.|+++.+....++.++.++ +.+.++.+  .+..|++++.|++++||.+.+
T Consensus       312 q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  312 QQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             EeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence             45568887778888654 57999999999999999888888887754 44555544  488999999999999999876


Q ss_pred             CccceeeecccceeeeEEeEEeeCC--------C-ceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        168 MGYIMQRRESSLKFQTRCIKCFPNK--------Q-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      ...+...+.+.  -.+..+.+.|.+        + .++.++.+..+.+|....+...    ..+..|         .-||
T Consensus       391 ~~~~~~l~~Hs--kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~f~kH---------~~pV  455 (524)
T KOG0273|consen  391 SNSVHDLQAHS--KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----HTLMKH---------QEPV  455 (524)
T ss_pred             Ccchhhhhhhc--cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----EeeccC---------CCce
Confidence            54332222211  123444555543        2 3445566666666555443321    222223         3489


Q ss_pred             eEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        239 NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      .+++|+|+|+++|+|+.||.|.||+...++.++.+.+ ...|..|+|+.+|.+|...-++
T Consensus       456 ysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd  514 (524)
T KOG0273|consen  456 YSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASD  514 (524)
T ss_pred             EEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecC
Confidence            9999999999999999999999999999998887764 4569999999999999877554

>KOG0284|consensus

Probab=99.98  E-value=1.3e-31  Score=224.44  Aligned_cols=237  Identities=19%  Similarity=0.374  Sum_probs=189.5

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC-CCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH-SDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h-~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|++.|+++.|+++ +.++++|+.+|.|++|+.+.........| ..+|.+++|+ +...++|+|.||+|++||.....
T Consensus       135 QaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k  213 (464)
T KOG0284|consen  135 QAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK  213 (464)
T ss_pred             hhhcccceeEEEccC-CCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc
Confidence            678999999999995 68999999999999999987776666654 4899999995 67789999999999999987655


Q ss_pred             e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEEE--EecCCCeEEEEeCCCeEEEEEC
Q psy11885         90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVFT--MSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      . ..+.+|.-.|++++|+|...+|+|||.|+.|++||.+++.|+.++..+. .++.  +.++++.|++++.|..++++|+
T Consensus       214 ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~Di  293 (464)
T KOG0284|consen  214 EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDI  293 (464)
T ss_pred             hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEeh
Confidence            4 5678999999999999999999999999999999999999999887654 4444  4556889999999999999999


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      |+++.+...+.+.  -...++.++|-.. .+.+++.++.+..+.+........+            ...|...|++++||
T Consensus       294 R~mkEl~~~r~Hk--kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i------------~~AHd~~iwsl~~h  359 (464)
T KOG0284|consen  294 RTMKELFTYRGHK--KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI------------PPAHDGEIWSLAYH  359 (464)
T ss_pred             hHhHHHHHhhcch--hhheeeccccccccceeeccCCCceEEEeccccccccCC------------Ccccccceeeeecc
Confidence            9776543332222  2246677888654 4556677777776666533222211            12234469999999


Q ss_pred             cCCCeEEEecCCCeEEEEe
Q psy11885        245 QEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd  263 (327)
                      |-|.+|++|+.|.++++|.
T Consensus       360 PlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  360 PLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             ccceeEeecCCCcceeeec
Confidence            9999999999999999996

>KOG0263|consensus

Probab=99.97  E-value=1.6e-30  Score=234.01  Aligned_cols=227  Identities=26%  Similarity=0.434  Sum_probs=185.1

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      --.|.++|..++|+|+ +++|+++|.|+++|+|.+.+......+ +|..||..+.|+ -|-+++|+|.|++.++|..+..
T Consensus       447 L~GH~GPVyg~sFsPd-~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~  525 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPD-RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN  525 (707)
T ss_pred             eecCCCceeeeeeccc-ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence            4568899999999995 689999999999999999998865544 799999999995 6778899999999999998877


Q ss_pred             cee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC---cEEEEecCCCeEEEEeCCCeEEEEE
Q psy11885         89 TET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD---KVFTMSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        89 ~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      .+. .+.+|.+.|.|+.|+|+.+++++||.|.++|+||..+|.+++.|.++.   ..+.+++||..|++|+.|+.|.+||
T Consensus       526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD  605 (707)
T KOG0263|consen  526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD  605 (707)
T ss_pred             CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence            664 567999999999999999999999999999999999999999887643   3466888999999999999999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      +.++..+.+                                                +..|         ...|++++|+
T Consensus       606 l~~~~~v~~------------------------------------------------l~~H---------t~ti~SlsFS  628 (707)
T KOG0263|consen  606 LANGSLVKQ------------------------------------------------LKGH---------TGTIYSLSFS  628 (707)
T ss_pred             cCCCcchhh------------------------------------------------hhcc---------cCceeEEEEe
Confidence            987543211                                                0112         1257899999


Q ss_pred             cCCCeEEEecCCCeEEEEeCCCceee------------------------eecCcCCcceEEEEECCCCCEEEEE
Q psy11885        245 QEYNTFATGGSDGYVNIWDGFNKKRL------------------------CQFHRYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~~~~~~------------------------~~~~~~~~~v~~l~fspdg~~la~~  295 (327)
                      .||..||+||.|++|++||+.+....                        ..+..-..+|.+|.|..-+-.|++|
T Consensus       629 ~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  629 RDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             cCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence            99999999999999999997543222                        2233334577778887766555544

>KOG0291|consensus

Probab=99.97  E-value=4.9e-29  Score=223.15  Aligned_cols=267  Identities=16%  Similarity=0.278  Sum_probs=211.6

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECC-CcEEEEECCCCeEE-EEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCce
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWD-CNVSLYDITNNNLR-LKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d-~~i~iwd~~~~~~~-~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .+..|..++|+.. +.++|.|+.. |.+-||++.+.... ...+|-..+.++++ ++++.+++|+.||.||+||..++-+
T Consensus       306 s~~~I~t~~~N~t-GDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC  384 (893)
T KOG0291|consen  306 SDQKILTVSFNST-GDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC  384 (893)
T ss_pred             ccceeeEEEeccc-CCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence            4468999999985 5788887654 89999999988854 44579999999999 4889999999999999999998877


Q ss_pred             e-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc----EEEEecCCCeEEEEeCCC-eEEEEE
Q psy11885         91 T-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK----VFTMSLCGEKFVVGTAGR-KVCIWD  164 (327)
Q Consensus        91 ~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~-~v~iwD  164 (327)
                      . .+..|++.|+.+.|+..|+.+++++-||+||.||+...++.+++..|.+    +.+++++|+.+.+|+.|. .|.+|+
T Consensus       385 ~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS  464 (893)
T KOG0291|consen  385 FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS  464 (893)
T ss_pred             EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence            4 5678999999999999999999999999999999999999999887654    345567788888888777 699999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      +++++.......  +..+.-++.+.|.++.++.++-+.++++|..-....  .+           +.++....+..++|+
T Consensus       465 ~qTGqllDiLsG--HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~--~v-----------Etl~i~sdvl~vsfr  529 (893)
T KOG0291|consen  465 VQTGQLLDILSG--HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG--TV-----------ETLEIRSDVLAVSFR  529 (893)
T ss_pred             eecCeeeehhcC--CCCcceeeEEccccCeEEeccccceEEEEEeeccCc--ee-----------eeEeeccceeEEEEc
Confidence            999875433222  223446677899999888888888888765433211  11           012233457899999


Q ss_pred             cCCCeEEEecCCCeEEEEeCCCceeeeecCc--------------------CCcceEEEEECCCCCEEEEEE
Q psy11885        245 QEYNTFATGGSDGYVNIWDGFNKKRLCQFHR--------------------YDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~~~~~~~~~~~--------------------~~~~v~~l~fspdg~~la~~~  296 (327)
                      |||+.||++.-||.|.+||...+..+..+.+                    ..+..+.|+||+||..|.+|+
T Consensus       530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG  601 (893)
T KOG0291|consen  530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG  601 (893)
T ss_pred             CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC
Confidence            9999999999999999999877655533211                    124689999999999999997

>KOG0276|consensus

Probab=99.97  E-value=5.7e-29  Score=218.63  Aligned_cols=269  Identities=18%  Similarity=0.324  Sum_probs=212.4

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-CCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCce-
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTE-   90 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~-   90 (327)
                      +.+.|-++.|||. ..+++++=..|.|.|||.++..+...+. ...||.++.| ...+.+++|+.|..||+|+.++... 
T Consensus        12 rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV   90 (794)
T KOG0276|consen   12 RSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV   90 (794)
T ss_pred             cCCceeeeecCCC-CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee
Confidence            5568999999995 5789989999999999999988655544 5678999998 5778999999999999999998865 


Q ss_pred             eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC-ceeeeeeCCCc-EEEEecC---CCeEEEEeCCCeEEEEEC
Q psy11885         91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS-RCVGNYTQPDK-VFTMSLC---GEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~-~~~~~~~~~~~-~~~~~~~---~~~~~~~~~d~~v~iwD~  165 (327)
                      ..+..|.+.|++++.+|...+++|+|.|-+|++||.+.. .|.++++.+.. ++.+.++   .+.|++++.|++|++|.+
T Consensus        91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl  170 (794)
T KOG0276|consen   91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL  170 (794)
T ss_pred             EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc
Confidence            568899999999999999999999999999999999764 57788887654 5566654   457999999999999999


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCC--CceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNK--QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      .+.........+  .-..+|+.+.+.+  +.+++++.+..+.||.+.+..+.+    .+.+|         ...|+.+.|
T Consensus       171 gs~~~nfTl~gH--ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~----TLeGH---------t~Nvs~v~f  235 (794)
T KOG0276|consen  171 GSPHPNFTLEGH--EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ----TLEGH---------TNNVSFVFF  235 (794)
T ss_pred             CCCCCceeeecc--ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH----Hhhcc---------cccceEEEe
Confidence            875543332222  2235788887755  456666666667775554433222    22333         346899999


Q ss_pred             ecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        244 HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      ||.-.+++|||+||++|||...+.+....+.-.-.++||++-.+.+..+|.|...
T Consensus       236 hp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~De  290 (794)
T KOG0276|consen  236 HPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDE  290 (794)
T ss_pred             cCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccC
Confidence            9999999999999999999988877776665555689999999999999998543

>KOG0278|consensus

Probab=99.97  E-value=1.1e-30  Score=206.34  Aligned_cols=275  Identities=17%  Similarity=0.199  Sum_probs=209.5

Q ss_pred             CCCCCCeeEEEEecC--CCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCC
Q psy11885         12 SPPEDGITAVKFAPN--SNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~--~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      +-|..+|-.++|||-  .+.||++++.|+.-.+.+-++|. +-.+.+|+++|.++++. +....+|++.|.+.++||.-+
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t   90 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT   90 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence            457789999999973  45799999999999999999998 55667899999999985 666778999999999999888


Q ss_pred             CceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc-eeeeeeC-CCcEEE--EecCCCeEEEEeCCCeEEEE
Q psy11885         88 QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR-CVGNYTQ-PDKVFT--MSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        88 ~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~-~~~~~~~-~~~~~~--~~~~~~~~~~~~~d~~v~iw  163 (327)
                      +.......|..-|.+++|+.|.++|++|+.+.-+|+||++.-+ +..++.. +..+-.  +....+.+++++.|++||+|
T Consensus        91 gdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLW  170 (334)
T KOG0278|consen   91 GDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLW  170 (334)
T ss_pred             hhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEE
Confidence            8766666788899999999999999999999999999998744 2333433 233333  33346678888999999999


Q ss_pred             ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      |.|++..+....   ...+...+..++++..+ +....+.+  .+|+...-.....+.+.            ..|.+.++
T Consensus       171 D~rTgt~v~sL~---~~s~VtSlEvs~dG~il-Tia~gssV--~Fwdaksf~~lKs~k~P------------~nV~SASL  232 (334)
T KOG0278|consen  171 DHRTGTEVQSLE---FNSPVTSLEVSQDGRIL-TIAYGSSV--KFWDAKSFGLLKSYKMP------------CNVESASL  232 (334)
T ss_pred             EeccCcEEEEEe---cCCCCcceeeccCCCEE-EEecCcee--EEeccccccceeeccCc------------cccccccc
Confidence            999987553322   22334556666665443 33333333  34543221111111111            24778899


Q ss_pred             ecCCCeEEEecCCCeEEEEeCCCceeeeec-CcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        244 HQEYNTFATGGSDGYVNIWDGFNKKRLCQF-HRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd~~~~~~~~~~-~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      +|+...|+.|++|..++.||..+++.+..+ ++|.++|.||.|||||...|+|+.++..+.+
T Consensus       233 ~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW  294 (334)
T KOG0278|consen  233 HPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW  294 (334)
T ss_pred             cCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence            999999999999999999999999998885 8999999999999999999999888777665

>KOG0275|consensus

Probab=99.97  E-value=5.8e-30  Score=209.22  Aligned_cols=277  Identities=16%  Similarity=0.246  Sum_probs=212.4

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE---------EecCCCceeeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL---------KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~   85 (327)
                      ..+-|..|+|+ ++||++|+.||-|.+||..+|+++.         +..+.++|.|++|+ +...+++|+.||.|++|.+
T Consensus       214 Sh~EcA~FSPD-gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  214 SHVECARFSPD-GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             cchhheeeCCC-CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            45679999995 6899999999999999999988642         22477899999997 7778889999999999999


Q ss_pred             CCCceee--eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE---EEEecCCCeEEEEeCCCeE
Q psy11885         86 NTQTETV--IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV---FTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        86 ~~~~~~~--~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~v  160 (327)
                      +++.+..  -..|+..|+++.|+.|+..+++++.|.++|+-.+.+|++++++..+...   ..+..+|..+++++.||+|
T Consensus       293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv  372 (508)
T KOG0275|consen  293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTV  372 (508)
T ss_pred             ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence            9998743  3479999999999999999999999999999999999999998876543   3567789999999999999


Q ss_pred             EEEECCCCccceeeecccceeeeEEeEEeeCC-CceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      ++|+.++.+............+.+.+...|.. ..+++....+.+.+  .....   .+...+..- .++.     ...-
T Consensus       373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~i--mn~qG---QvVrsfsSG-kREg-----GdFi  441 (508)
T KOG0275|consen  373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYI--MNMQG---QVVRSFSSG-KREG-----GDFI  441 (508)
T ss_pred             EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEE--Eeccc---eEEeeeccC-CccC-----CceE
Confidence            99999988765333332233334455555543 34444444443333  22211   112222110 0111     1234


Q ss_pred             EEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        240 AISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       240 ~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      +.+.||.|..+...++|+..+.+...+|+....+..|+..|..++-+|..+.||+-+.+++...+
T Consensus       442 ~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLW  506 (508)
T KOG0275|consen  442 NAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLW  506 (508)
T ss_pred             EEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhc
Confidence            56889999999999999999999999999999999999999999999999999988877766554

>KOG0645|consensus

Probab=99.97  E-value=2.2e-27  Score=189.52  Aligned_cols=276  Identities=14%  Similarity=0.171  Sum_probs=200.6

Q ss_pred             ecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe---EEEE--ecCCCceeeEEE-eCCceEEEEecCCcEEE
Q psy11885          9 SLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN---LRLK--YAHSDPVLDCCF-QDAVHSFSGGLDCTLKM   82 (327)
Q Consensus         9 ~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~--~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~v   82 (327)
                      ...+.|.+.|-.++|+|-.+.+||++|.|+.||+|+...+.   ++..  .+|+..|.+++| +.+.++++||.|.++.+
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI   87 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence            34556778999999999436689999999999999998533   2222  259999999999 57889999999999999


Q ss_pred             EEcCCCce---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC---ceeeeee---CCCcEEEEecCCCeEEE
Q psy11885         83 FDFNTQTE---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS---RCVGNYT---QPDKVFTMSLCGEKFVV  153 (327)
Q Consensus        83 wd~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~---~~~~~~~---~~~~~~~~~~~~~~~~~  153 (327)
                      |.-..+..   ..+.+|+..|.+++|+++|++|++++.|+.|.+|.....   +|...++   +..+...++|..+.|++
T Consensus        88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S  167 (312)
T KOG0645|consen   88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFS  167 (312)
T ss_pred             eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEE
Confidence            97665543   357899999999999999999999999999999998754   3444444   33455667777789999


Q ss_pred             EeCCCeEEEEECC-CCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCe
Q psy11885        154 GTAGRKVCIWDLR-NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI  232 (327)
Q Consensus       154 ~~~d~~v~iwD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~  232 (327)
                      ++.|++|++|+-. ...-.+...........-++.|.+.+..++.++.++.+.||.....-.  .               
T Consensus       168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~--~---------------  230 (312)
T KOG0645|consen  168 CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS--G---------------  230 (312)
T ss_pred             eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc--h---------------
Confidence            9999999999765 222111111222222456788888888888888888888865321110  0               


Q ss_pred             eeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCc------eeee-ecCcCCcceEEEEECCC-CCEEEEEEccccccCC
Q psy11885        233 EKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK------KRLC-QFHRYDTGITSLCFSYD-GNVLAIACSYNYELET  304 (327)
Q Consensus       233 ~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~------~~~~-~~~~~~~~v~~l~fspd-g~~la~~~~~~~~~~~  304 (327)
                      .|-.+++.++|.  ...||||+.|+.|+++.-...      +.+. .-..|+..|++++|+|. ...|++++. +.++..
T Consensus       231 ~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D-DG~v~~  307 (312)
T KOG0645|consen  231 MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD-DGIVNF  307 (312)
T ss_pred             hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCC-CceEEE
Confidence            111256778887  458999999999999975432      1111 23467788999999995 556666644 444433

>KOG0283|consensus

Probab=99.97  E-value=5e-29  Score=226.05  Aligned_cols=242  Identities=17%  Similarity=0.298  Sum_probs=187.8

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC------------------------------C-eEE----------
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN------------------------------N-NLR----------   51 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~------------------------------~-~~~----------   51 (327)
                      .|++.|-++.||++ ++|||+||.|+.|+||.+..                              . ++.          
T Consensus       265 ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            79999999999995 68999999999999998754                              0 000          


Q ss_pred             --------------------EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeC-CCC
Q psy11885         52 --------------------LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSD-EVN  110 (327)
Q Consensus        52 --------------------~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~-~~~  110 (327)
                                          .+.+|.+.|+.+.|++.++|+|+|+|.|||+|++....+.....|.+.|+|++|+| |.+
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDr  423 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDR  423 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCC
Confidence                                01368889999999999999999999999999999888888889999999999998 778


Q ss_pred             EEEEEECCCeEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEE
Q psy11885        111 CILTGSWDTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC  188 (327)
Q Consensus       111 ~l~sgs~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~  188 (327)
                      +++||+-|+++|||++...+.+.-...+.  ..+++.|+|+..++|+.+|.+++|+++..+++..          ..|..
T Consensus       424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~----------~~I~~  493 (712)
T KOG0283|consen  424 YFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD----------FHIRL  493 (712)
T ss_pred             cEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe----------eeEee
Confidence            99999999999999998877665444333  3456778899999999999999999886543211          00000


Q ss_pred             eeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCc
Q psy11885        189 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNK  267 (327)
Q Consensus       189 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~  267 (327)
                      ...                        ++.     .|.          .|+.+.|.|.. ..+++.+.|..|||+|.++.
T Consensus       494 ~~~------------------------Kk~-----~~~----------rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~  534 (712)
T KOG0283|consen  494 HNK------------------------KKK-----QGK----------RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK  534 (712)
T ss_pred             ccC------------------------ccc-----cCc----------eeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence            000                        000     000          36677777643 35888889999999999888


Q ss_pred             eeeeecCcCCcc--eEEEEECCCCCEEEEEEccccccCC
Q psy11885        268 KRLCQFHRYDTG--ITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       268 ~~~~~~~~~~~~--v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      ..+.+++++...  -..-.|+.||++|++|+.+.+.+.|
T Consensus       535 ~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW  573 (712)
T KOG0283|consen  535 DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW  573 (712)
T ss_pred             hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence            889999876542  3567999999999999865555554

>KOG0313|consensus

Probab=99.97  E-value=4.1e-28  Score=201.85  Aligned_cols=271  Identities=17%  Similarity=0.290  Sum_probs=200.8

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CC---ceEEEEecCCcEEEEEcCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DA---VHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~---~~~~sgs~Dg~i~vwd~~~   87 (327)
                      ..|++=|.++.-.   .+++++|++||++++||..+.......+|.+++.++++. .+   ..++++|.|.++++|..+.
T Consensus       102 ~~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA---SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             ccchhhhhhhccc---CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            3455555566555   368999999999999999887778888999999999883 33   3589999999999998876


Q ss_pred             Ccee-----eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc-------------------------eeeeeeC
Q psy11885         88 QTET-----VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR-------------------------CVGNYTQ  137 (327)
Q Consensus        88 ~~~~-----~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~-------------------------~~~~~~~  137 (327)
                      +...     .-.+|...|-++...++|..++||++|.+|.+|+.++-.                         ++-.+..
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence            5431     234899999999999999999999999999999932110                         1111222


Q ss_pred             C-CcEEEEecC-CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccc
Q psy11885        138 P-DKVFTMSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEM  215 (327)
Q Consensus       138 ~-~~~~~~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  215 (327)
                      + ..+.++.++ ...+++++.|-+|+.||+.+.+......   ......|+...+....++.++.+...++  ||.....
T Consensus       259 Ht~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~---~~ksl~~i~~~~~~~Ll~~gssdr~irl--~DPR~~~  333 (423)
T KOG0313|consen  259 HTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT---TNKSLNCISYSPLSKLLASGSSDRHIRL--WDPRTGD  333 (423)
T ss_pred             cccceeeEEEcCCCceEeecccceEEEEEeecccceeeee---cCcceeEeecccccceeeecCCCCceee--cCCCCCC
Confidence            1 233444443 5568899999999999998776432221   1123467888887777778887777665  6655433


Q ss_pred             c-cceeeeeeeeeccCCeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCce-eeeecCcCCcceEEEEECCCCCEE
Q psy11885        216 Q-KMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSLCFSYDGNVL  292 (327)
Q Consensus       216 ~-~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~-~~~~~~~~~~~v~~l~fspdg~~l  292 (327)
                      . .+...+.+|         ...|.++.|+|.. .+|++||.|+++++||+++.+ ++..+.+|...|.++.|+. +.+|
T Consensus       334 gs~v~~s~~gH---------~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~I  403 (423)
T KOG0313|consen  334 GSVVSQSLIGH---------KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLI  403 (423)
T ss_pred             CceeEEeeecc---------hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceE
Confidence            2 233334444         3478999999965 468899999999999999887 8899999999999999985 7899


Q ss_pred             EEEEcccc
Q psy11885        293 AIACSYNY  300 (327)
Q Consensus       293 a~~~~~~~  300 (327)
                      ++|+-+..
T Consensus       404 vSGGaD~~  411 (423)
T KOG0313|consen  404 VSGGADNK  411 (423)
T ss_pred             EeccCcce
Confidence            99984433

>KOG0293|consensus

Probab=99.97  E-value=1.3e-28  Score=206.85  Aligned_cols=284  Identities=15%  Similarity=0.168  Sum_probs=207.6

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~   85 (327)
                      -..|.++|--+.||++ +++||+++.|.+..+|++....    .....+|..+|..+.|+ +..++++++.|-.+++||+
T Consensus       220 l~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv  298 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV  298 (519)
T ss_pred             HhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence            4668899999999995 6899999999999999986543    23455799999999995 8889999999999999999


Q ss_pred             CCCceeeee--cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC----CCcEEEEecCCCeEEEEeCCCe
Q psy11885         86 NTQTETVIG--THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ----PDKVFTMSLCGEKFVVGTAGRK  159 (327)
Q Consensus        86 ~~~~~~~~~--~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~  159 (327)
                      .++......  +|...+.+.+|.|||..+++|+.|+++..||+..+. ...++.    ....+++..+|+.+++.+.|..
T Consensus       299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~  377 (519)
T KOG0293|consen  299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK  377 (519)
T ss_pred             CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence            998765433  455789999999999999999999999999997543 222221    1223556778999999999999


Q ss_pred             EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      +++++..+........   ..........+.+++.+++.-.++...+|.+.  +  .+....+.+|+..      .+-|.
T Consensus       378 i~l~~~e~~~dr~lis---e~~~its~~iS~d~k~~LvnL~~qei~LWDl~--e--~~lv~kY~Ghkq~------~fiIr  444 (519)
T KOG0293|consen  378 IRLYNREARVDRGLIS---EEQPITSFSISKDGKLALVNLQDQEIHLWDLE--E--NKLVRKYFGHKQG------HFIIR  444 (519)
T ss_pred             eeeechhhhhhhcccc---ccCceeEEEEcCCCcEEEEEcccCeeEEeecc--h--hhHHHHhhccccc------ceEEE
Confidence            9999986542221111   11122344445555555566566666664443  2  2333334444432      12344


Q ss_pred             EEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCC-CCEEEEEEccccccCCCCCCC
Q psy11885        240 AISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD-GNVLAIACSYNYELETPPDPI  309 (327)
Q Consensus       240 ~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspd-g~~la~~~~~~~~~~~~~~~~  309 (327)
                      ++----+..++|+||+|+.|+||+..+++++..+.+|...|++++|+|. -.++|+|+.++...++-|.+.
T Consensus       445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            4322345678999999999999999999999999999999999999995 457777777777777644443

>KOG1407|consensus

Probab=99.97  E-value=1.3e-28  Score=195.64  Aligned_cols=232  Identities=23%  Similarity=0.329  Sum_probs=185.1

Q ss_pred             EecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCce---eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCC
Q psy11885         53 KYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTE---TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPR  127 (327)
Q Consensus        53 ~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~---~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~  127 (327)
                      ..+|..+|.+++| .++..+++|+.|+++++|+++..+.   ....+|.+.|-.++|+| ....+++++.|.+||+||.+
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r   95 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR   95 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence            3468889999999 5999999999999999999987643   23567998999999986 56889999999999999999


Q ss_pred             CCceeeeeeC--CCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEE
Q psy11885        128 SSRCVGNYTQ--PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAA  205 (327)
Q Consensus       128 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (327)
                      +++|......  .+..+.++++|++++++..|..|.+.|.|+.+.+..   .......+.+.++.+.+.+.+....|.+.
T Consensus        96 ~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~---~~~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   96 SGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE---EQFKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             cCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh---hcccceeeeeeecCCCCEEEEecCCceEE
Confidence            9999887664  445678899999999999999999999998764322   22233345566776667777777767776


Q ss_pred             EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEE
Q psy11885        206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF  285 (327)
Q Consensus       206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f  285 (327)
                      |..|-.    .+....++.|.         ..+.||.|+|+|++||+||.|-.+-+||+...-.+..+.+++-||..|.|
T Consensus       173 ILsyps----Lkpv~si~AH~---------snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSF  239 (313)
T KOG1407|consen  173 ILSYPS----LKPVQSIKAHP---------SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSF  239 (313)
T ss_pred             EEeccc----cccccccccCC---------cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEe
Confidence            644432    12223334443         23678999999999999999999999999988778888999999999999


Q ss_pred             CCCCCEEEEEEcccc
Q psy11885        286 SYDGNVLAIACSYNY  300 (327)
Q Consensus       286 spdg~~la~~~~~~~  300 (327)
                      |-||++||+|+.+..
T Consensus       240 S~dg~~lASaSEDh~  254 (313)
T KOG1407|consen  240 SHDGRMLASASEDHF  254 (313)
T ss_pred             ccCcceeeccCccce
Confidence            999999999977644

>KOG0318|consensus

Probab=99.97  E-value=1.2e-26  Score=200.39  Aligned_cols=284  Identities=18%  Similarity=0.219  Sum_probs=210.1

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      .-|...|+++.|-|...-.+++||.|++|-+|+-..-+... ...|..-|.+++| +++..++|+|.||+|.+||=.++.
T Consensus       144 ~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge  223 (603)
T KOG0318|consen  144 TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE  223 (603)
T ss_pred             eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc
Confidence            44667899999999766679999999999999887777443 3468889999999 589999999999999999987776


Q ss_pred             ee-eee---cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC----cEEEEecCCCeEEEEeCCCeEE
Q psy11885         90 ET-VIG---THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD----KVFTMSLCGEKFVVGTAGRKVC  161 (327)
Q Consensus        90 ~~-~~~---~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~v~  161 (327)
                      .. .+.   .|++.|.+|.|+||+..++|++.|.++++||+.+++++.++....    ....+.+.++.|++.+.+|.+.
T Consensus       224 ~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in  303 (603)
T KOG0318|consen  224 KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN  303 (603)
T ss_pred             EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence            53 454   799999999999999999999999999999999999999887543    3344555688999999999999


Q ss_pred             EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccc--------ee-------------
Q psy11885        162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM--------KY-------------  220 (327)
Q Consensus       162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~-------------  220 (327)
                      +++.........+..+..  ...++..++++..+..++.+|.+.-|....+...+..        ..             
T Consensus       304 ~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g  381 (603)
T KOG0318|consen  304 YLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG  381 (603)
T ss_pred             EecccCCChhheeccccc--ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence            999887763322222222  2356667777777777777777655433222111000        00             


Q ss_pred             --------ee-----eeee------------eccCC----------------------eeeEEEeeEEEEecCCCeEEEe
Q psy11885        221 --------AF-----KCHR------------IKEDG----------------------IEKIYPVNAISFHQEYNTFATG  253 (327)
Q Consensus       221 --------~~-----~~h~------------~~~~~----------------------~~~~~~v~~v~~spd~~~lasg  253 (327)
                              .+     ..+.            ...++                      ....+...+++++|+++.+|+|
T Consensus       382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVG  461 (603)
T KOG0318|consen  382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVG  461 (603)
T ss_pred             cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEe
Confidence                    00     0000            00000                      0001235689999999999999


Q ss_pred             cCCCeEEEEeCCCcee--eeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        254 GSDGYVNIWDGFNKKR--LCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       254 s~dg~i~iWd~~~~~~--~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      ++|+.|+||.+...+.  ..+...|..+|++++|||||.|||++.-
T Consensus       462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da  507 (603)
T KOG0318|consen  462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA  507 (603)
T ss_pred             cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc
Confidence            9999999999876543  3345678889999999999999998853

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.6e-27  Score=215.96  Aligned_cols=221  Identities=19%  Similarity=0.244  Sum_probs=166.7

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--------EEEEecCCCceeeEEEeC--CceEEEEecCCcEEE
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--------LRLKYAHSDPVLDCCFQD--AVHSFSGGLDCTLKM   82 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~h~~~v~~~~~~~--~~~~~sgs~Dg~i~v   82 (327)
                      .|.+.|++++|+|.++.+|++++.|++|++||+..+.        +..+.+|...|.+++|++  ...++||+.|++|++
T Consensus        73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI  152 (493)
T PTZ00421         73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV  152 (493)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence            4778999999999445789999999999999997642        234557999999999963  368999999999999


Q ss_pred             EEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc----EEEEecCCCeEEEEe--
Q psy11885         83 FDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK----VFTMSLCGEKFVVGT--  155 (327)
Q Consensus        83 wd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--  155 (327)
                      ||++++... .+..|...|.+++|+++++.|++++.|++|++||+++++.+..+..+..    ...+.+.++.+++++  
T Consensus       153 WDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s  232 (493)
T PTZ00421        153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCS  232 (493)
T ss_pred             EECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecC
Confidence            999987653 4667999999999999999999999999999999999988777654432    223444555666543  


Q ss_pred             --CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCee
Q psy11885        156 --AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE  233 (327)
Q Consensus       156 --~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~  233 (327)
                        .|+.|++||+++......              ..                  ..+..                     
T Consensus       233 ~s~Dr~VklWDlr~~~~p~~--------------~~------------------~~d~~---------------------  259 (493)
T PTZ00421        233 KSQQRQIMLWDTRKMASPYS--------------TV------------------DLDQS---------------------  259 (493)
T ss_pred             CCCCCeEEEEeCCCCCCcee--------------Ee------------------ccCCC---------------------
Confidence              478999999986431100              00                  00000                     


Q ss_pred             eEEEeeEEEEecCCCeEEEec-CCCeEEEEeCCCceeeeecC-cCCcceEEEEECCC
Q psy11885        234 KIYPVNAISFHQEYNTFATGG-SDGYVNIWDGFNKKRLCQFH-RYDTGITSLCFSYD  288 (327)
Q Consensus       234 ~~~~v~~v~~spd~~~lasgs-~dg~i~iWd~~~~~~~~~~~-~~~~~v~~l~fspd  288 (327)
                        ..+....|+|++++|++|+ .|+.|++||+.+++.+.... ....++..++|.|.
T Consensus       260 --~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        260 --SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             --CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence              0133457889999999887 49999999999887665442 23446788999995

>KOG0319|consensus

Probab=99.96  E-value=9.6e-28  Score=214.49  Aligned_cols=273  Identities=16%  Similarity=0.220  Sum_probs=217.3

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEE-EeCCceEEEEecCCcEEEEEcCCCcee--
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCC-FQDAVHSFSGGLDCTLKMFDFNTQTET--   91 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~-~~~~~~~~sgs~Dg~i~vwd~~~~~~~--   91 (327)
                      .++|..++|--....+||+++..+.+|+|++.+..+....+|++.|.++. +.++..++|||.|.++++|.++.+...  
T Consensus       323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~  402 (775)
T KOG0319|consen  323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL  402 (775)
T ss_pred             chhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhh
Confidence            36899999986566899999999999999999888888889999999998 567889999999999999998654332  


Q ss_pred             ---eeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceee---ee---------eCCCcEEEEecCCCeEEEEe
Q psy11885         92 ---VIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVG---NY---------TQPDKVFTMSLCGEKFVVGT  155 (327)
Q Consensus        92 ---~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~  155 (327)
                         ...+|+..|.+++++..+ ..|+++|.|+++++|++...+...   .+         .......+++++...+++|+
T Consensus       403 ~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S  482 (775)
T KOG0319|consen  403 CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS  482 (775)
T ss_pred             hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence               245799999999997654 678999999999999997632111   01         11234567788888999999


Q ss_pred             CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeE
Q psy11885        156 AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI  235 (327)
Q Consensus       156 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  235 (327)
                      .|++.+||++.+........  .+.-...|+.|.+.++.+++++.+.++.||..+.....+    .+.+|         .
T Consensus       483 qDktaKiW~le~~~l~~vLs--GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk----T~eGH---------~  547 (775)
T KOG0319|consen  483 QDKTAKIWDLEQLRLLGVLS--GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK----TFEGH---------T  547 (775)
T ss_pred             cccceeeecccCceEEEEee--CCccceEEEEeccccceeEeccCCceEEEEEeccceeee----eecCc---------c
Confidence            99999999998554321111  111124688999999999999999999998776655432    22333         3


Q ss_pred             EEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccccc
Q psy11885        236 YPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYEL  302 (327)
Q Consensus       236 ~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~  302 (327)
                      ..|-.+.|-.+++.|+|++.||.+++|++.+.+.+.++..|...||+++-+|++.++++|++++-..
T Consensus       548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~  614 (775)
T KOG0319|consen  548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRII  614 (775)
T ss_pred             ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEE
Confidence            4688889999999999999999999999999999999999999999999999999998887665443

>KOG1407|consensus

Probab=99.96  E-value=2.7e-27  Score=188.14  Aligned_cols=272  Identities=16%  Similarity=0.228  Sum_probs=211.1

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE---EecCCCceeeEEEe--CCceEEEEecCCcEEEEEcC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL---KYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      ..|.+.|.+++|+-+ +..|++|+.|+++++|+++..+...   ..+|.+.|-.+++.  ....+++++.|.+||+||+.
T Consensus        17 ~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r   95 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR   95 (313)
T ss_pred             hhhhhcceEEEEccc-CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence            346678999999995 5789999999999999998876432   34688889888883  56788999999999999999


Q ss_pred             CCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEEEEeCCCeEEEEE
Q psy11885         87 TQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        87 ~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      +.++......+..-..+.|+|+|++++.++.|..|...|.++.+.....+..-.+  .++..+++.|+.-...|.|.|..
T Consensus        96 ~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILs  175 (313)
T KOG1407|consen   96 SGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILS  175 (313)
T ss_pred             cCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEe
Confidence            8876533222333456789999999999999999999999998877766654333  44455566666556669999988


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      -...+.+..+..+.  ...-||++.|.+..+++|+.+....+  ||..+....-  .+.         .+.+||..++||
T Consensus       176 ypsLkpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSL--WD~~ELiC~R--~is---------RldwpVRTlSFS  240 (313)
T KOG1407|consen  176 YPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSL--WDVDELICER--CIS---------RLDWPVRTLSFS  240 (313)
T ss_pred             ccccccccccccCC--cceEEEEECCCCceEeeccccceeec--cChhHhhhhe--eec---------cccCceEEEEec
Confidence            77777654443333  44578899999999999998877665  6654432211  111         123689999999


Q ss_pred             cCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        245 QEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      -||++||+||+|..|-|=++++|.++..++ ++++-.+|||+|...+||.+|++.-
T Consensus       241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~  295 (313)
T KOG1407|consen  241 HDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKD  295 (313)
T ss_pred             cCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCC
Confidence            999999999999999999999999998885 5678899999999999999997643

>KOG0277|consensus

Probab=99.96  E-value=2e-28  Score=193.90  Aligned_cols=233  Identities=21%  Similarity=0.294  Sum_probs=177.9

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--EEEEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCCCce
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--LRLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      ++++..++|+++....+++++-||+++|||.....  +....+|+..|.++.|.  .+..++++|+|++||+|+-+.+..
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            46889999999877788999999999999975433  45556799999999994  677888889999999999876544


Q ss_pred             -eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEEEEecC---CCeEEEEeCCCeEEEEE
Q psy11885         91 -TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVFTMSLC---GEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        91 -~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~d~~v~iwD  164 (327)
                       ..+.+|+..|....|+| .++.++++|.|+++++||++.....+.+..+. ++.++.++   ...+++|+.|+.||.||
T Consensus       140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD  219 (311)
T KOG0277|consen  140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD  219 (311)
T ss_pred             eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence             45778999999999998 57899999999999999998754444466655 56676664   56799999999999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      +|+.+..       +                                        .++.+|         ...|..+.||
T Consensus       220 ir~~r~p-------l----------------------------------------~eL~gh---------~~AVRkvk~S  243 (311)
T KOG0277|consen  220 IRNLRTP-------L----------------------------------------FELNGH---------GLAVRKVKFS  243 (311)
T ss_pred             hhhcccc-------c----------------------------------------eeecCC---------ceEEEEEecC
Confidence            9975411       0                                        000112         2357889999


Q ss_pred             cCC-CeEEEecCCCeEEEEeCCCce-eeeecCcCCcceEEEEECCC-CCEEEEEEccccccCC
Q psy11885        245 QEY-NTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSLCFSYD-GNVLAIACSYNYELET  304 (327)
Q Consensus       245 pd~-~~lasgs~dg~i~iWd~~~~~-~~~~~~~~~~~v~~l~fspd-g~~la~~~~~~~~~~~  304 (327)
                      |.. ..|||+|.|-++||||..... .+.+...|..-|..+.||+. ..++|+. +|+-.+.-
T Consensus       244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~-gWDe~l~V  305 (311)
T KOG0277|consen  244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST-GWDELLYV  305 (311)
T ss_pred             cchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeec-ccccceee
Confidence            854 678999999999999977443 34455667777899999995 4466554 55444433

>KOG0299|consensus

Probab=99.96  E-value=2.5e-27  Score=201.60  Aligned_cols=305  Identities=17%  Similarity=0.251  Sum_probs=225.8

Q ss_pred             eecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE----EE---------------ecCCCceeeEEE-eC
Q psy11885          8 YSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR----LK---------------YAHSDPVLDCCF-QD   67 (327)
Q Consensus         8 ~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~---------------~~h~~~v~~~~~-~~   67 (327)
                      |.....|.-+|++++++|+ +.+.++++.|++|.-|++.+++..    ..               ..|.+.+.+++. ++
T Consensus       135 ~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD  213 (479)
T ss_pred             ceeeccccCcceEEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence            6666778889999999995 589999999999999999877621    11               146667888888 59


Q ss_pred             CceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-CCcEEEEe
Q psy11885         68 AVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKVFTMS  145 (327)
Q Consensus        68 ~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-~~~~~~~~  145 (327)
                      +.++++|+.|..|.+|+.++... ..+.+|.+.|.+++|-.....+++++.|++|++|+++....+.++-. +..+..++
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            99999999999999999998765 45789999999999998888999999999999999988776666443 44566665


Q ss_pred             cC-CCeEEE-EeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeee
Q psy11885        146 LC-GEKFVV-GTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFK  223 (327)
Q Consensus       146 ~~-~~~~~~-~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  223 (327)
                      .. -.+.++ |+.|+++++|++..-...... ..  .....|+++. +...+++|+.+|.+.+|.+..-....   ..--
T Consensus       294 aL~reR~vtVGgrDrT~rlwKi~eesqlifr-g~--~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf---~~~~  366 (479)
T KOG0299|consen  294 ALSRERCVTVGGRDRTVRLWKIPEESQLIFR-GG--EGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLF---TSRL  366 (479)
T ss_pred             hhcccceEEeccccceeEEEeccccceeeee-CC--CCCeeeEEEe-cccceeeccCCceEEEeeecccCcee---Eeec
Confidence            43 345555 459999999999542221111 11  1233555544 55689999999998886654322211   1112


Q ss_pred             eeeeccC--CeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCce----eeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        224 CHRIKED--GIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK----RLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       224 ~h~~~~~--~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~----~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      .|.....  ...+.++|++++.-|...++|+||.+|.||+|.+.++-    .+..+. ..+-|++|+|+++|+.|++|.+
T Consensus       367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecc
Confidence            2433322  23334689999999999999999999999999988773    333333 4567999999999999999999


Q ss_pred             cccccCCC-CCCCCCCcEEEEEccc
Q psy11885        298 YNYELETP-PDPIPPNNIFIRHVTD  321 (327)
Q Consensus       298 ~~~~~~~~-~~~~~~~~~~~~~~~~  321 (327)
                      -...++|| ....-.|...+.++..
T Consensus       446 kEhRlGRW~~~k~~~~~~~v~~~~l  470 (479)
T KOG0299|consen  446 KEHRLGRWWCLKSGKNSGVVSPRRL  470 (479)
T ss_pred             cccccceeeEeecccccceeeeeee
Confidence            99999996 5556666666555443

>KOG0310|consensus

Probab=99.96  E-value=6.2e-28  Score=206.64  Aligned_cols=235  Identities=25%  Similarity=0.350  Sum_probs=187.7

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCC
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      ....++.|.++.|-.| +++||+|+..|.|+|+|..+.. ++...+|+.++..+.|+  ++..+++|+.|+.+++||+.+
T Consensus        64 ~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~  142 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST  142 (487)
T ss_pred             HHhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence            3456678899999985 6899999999999999965543 45667899999999995  566777999999999999998


Q ss_pred             Ccee-eeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCC-ceeeeeeCCCcE--EEEecCCCeEEEEeCCCeEEE
Q psy11885         88 QTET-VIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSS-RCVGNYTQPDKV--FTMSLCGEKFVVGTAGRKVCI  162 (327)
Q Consensus        88 ~~~~-~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~v~i  162 (327)
                      .... .+.+|++.|++.+++|.. ..++|||+||+||+||+++. ..+.++.+..++  ..+-++|..++++ ..+.|++
T Consensus       143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasA-gGn~vkV  221 (487)
T KOG0310|consen  143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASA-GGNSVKV  221 (487)
T ss_pred             cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEc-CCCeEEE
Confidence            7654 578999999999999864 58899999999999999986 667777765544  4455566677765 4678999


Q ss_pred             EECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        163 WDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       163 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                      ||+-++.....                                           ..    ..         |.-.|+|++
T Consensus       222 WDl~~G~qll~-------------------------------------------~~----~~---------H~KtVTcL~  245 (487)
T KOG0310|consen  222 WDLTTGGQLLT-------------------------------------------SM----FN---------HNKTVTCLR  245 (487)
T ss_pred             EEecCCceehh-------------------------------------------hh----hc---------ccceEEEEE
Confidence            99875431100                                           00    00         112589999


Q ss_pred             EecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        243 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       243 ~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      +..+++.|.|||-|+.|++||+.+.+.+... .+.++|.+++.|||++.++.|.++++..++
T Consensus       246 l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  246 LASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             eecCCceEeecccccceEEEEccceEEEEee-ecccceeeEEecCCCceEEEecccceeeee
Confidence            9999999999999999999998887776655 477899999999999999999999888777

>KOG0278|consensus

Probab=99.96  E-value=1.9e-29  Score=199.23  Aligned_cols=242  Identities=21%  Similarity=0.354  Sum_probs=194.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .-|++.|-......+ -...|+++.|-+.+|||.-+|.....+.|+..|..|+|+ +.+++++|+.+..+|+||++....
T Consensus        56 eghkgavw~~~l~~n-a~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A  134 (334)
T KOG0278|consen   56 EGHKGAVWSATLNKN-ATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA  134 (334)
T ss_pred             eccCcceeeeecCch-hhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC
Confidence            457788888888874 346778899999999999999888888999999999996 888999999999999999987653


Q ss_pred             --eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEEEEeCCCeEEEEECC
Q psy11885         91 --TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        91 --~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~iwD~~  166 (327)
                        ..+.+|.+.|+.+.|....+.|+|++.|++||+||.++++.++++..+.  ....++.+|+. ++-...++|.+||.+
T Consensus       135 pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~i-lTia~gssV~Fwdak  213 (334)
T KOG0278|consen  135 PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRI-LTIAYGSSVKFWDAK  213 (334)
T ss_pred             CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCE-EEEecCceeEEeccc
Confidence              4678999999999999999999999999999999999999998876544  44556666654 455567899999999


Q ss_pred             CCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC
Q psy11885        167 NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE  246 (327)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd  246 (327)
                      +.+.+..   ..++........+|+...++.+..+.....+.++++.+...       |     ..+|..||.|+.|+||
T Consensus       214 sf~~lKs---~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-------~-----nkgh~gpVhcVrFSPd  278 (334)
T KOG0278|consen  214 SFGLLKS---YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-------Y-----NKGHFGPVHCVRFSPD  278 (334)
T ss_pred             cccceee---ccCccccccccccCCCceEEecCcceEEEEEeccCCceeee-------c-----ccCCCCceEEEEECCC
Confidence            8775432   23344445667788887888888888877777777654322       1     1135568999999999


Q ss_pred             CCeEEEecCCCeEEEEeCCCceee
Q psy11885        247 YNTFATGGSDGYVNIWDGFNKKRL  270 (327)
Q Consensus       247 ~~~lasgs~dg~i~iWd~~~~~~~  270 (327)
                      |...|+||+||+|+||....++..
T Consensus       279 GE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  279 GELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CceeeccCCCceEEEEEecCCCch
Confidence            999999999999999987665543

>KOG0645|consensus

Probab=99.96  E-value=7.8e-27  Score=186.42  Aligned_cols=237  Identities=16%  Similarity=0.305  Sum_probs=172.7

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe---EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcC
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN---LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      ...|+..|+.+||+|. +++||++|.|.++.||.-+.++   ...+.+|...|.+++|+ ++.+|+++|.|++|-+|.+.
T Consensus        57 d~~hkrsVRsvAwsp~-g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   57 DDGHKRSVRSVAWSPH-GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             cccchheeeeeeecCC-CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence            3568899999999995 5799999999999999988776   24456899999999996 89999999999999999988


Q ss_pred             CCce----eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCC-CC--ceeeeeeCCC-cEEEE--ecCCCeEEEEeC
Q psy11885         87 TQTE----TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR-SS--RCVGNYTQPD-KVFTM--SLCGEKFVVGTA  156 (327)
Q Consensus        87 ~~~~----~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~-~~--~~~~~~~~~~-~~~~~--~~~~~~~~~~~~  156 (327)
                      ....    .+++.|+..|..+.|+|...+|+|+|+|++|++|+-. ..  +|++++..+. .+.++  .+.|.+|++++.
T Consensus       136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd  215 (312)
T KOG0645|consen  136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD  215 (312)
T ss_pred             CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC
Confidence            5432    3678999999999999999999999999999999876 22  4777777654 55554  556889999999


Q ss_pred             CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceee---eeeeeeccCCee
Q psy11885        157 GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA---FKCHRIKEDGIE  233 (327)
Q Consensus       157 d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~h~~~~~~~~  233 (327)
                      |++|+||-..+.=      ...+.-+...+.+.  ...+++++.++.+.++.-...+........   ...|.       
T Consensus       216 D~tv~Iw~~~~~~------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe-------  280 (312)
T KOG0645|consen  216 DGTVSIWRLYTDL------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHE-------  280 (312)
T ss_pred             CcceEeeeeccCc------chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccc-------
Confidence            9999999754321      00111111222232  234455555555555333322211111111   12222       


Q ss_pred             eEEEeeEEEEecC-CCeEEEecCCCeEEEEeCC
Q psy11885        234 KIYPVNAISFHQE-YNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       234 ~~~~v~~v~~spd-~~~lasgs~dg~i~iWd~~  265 (327)
                        -.||++.|.|. ..+|++||+||.|++|.+.
T Consensus       281 --~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  281 --VDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             --cccceEEEcCCCCCceeecCCCceEEEEEec
Confidence              25999999995 7899999999999999864

>KOG0281|consensus

Probab=99.96  E-value=2.2e-28  Score=201.60  Aligned_cols=265  Identities=18%  Similarity=0.288  Sum_probs=196.2

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      +..-.+|.|+.|..   ..+++|..|++|+|||.++-++ ..+++|++.|.|+.|-.. .++|||+|.+|++||++++++
T Consensus       194 Se~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge~  269 (499)
T KOG0281|consen  194 SENSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGEP  269 (499)
T ss_pred             cccCCceEEEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCch
Confidence            33457899999984   3689999999999999998774 566799999999988544 888999999999999999876


Q ss_pred             -eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee---eeeeC-CCcEEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         91 -TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV---GNYTQ-PDKVFTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        91 -~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                       ..+..|...|..+.|+.  .+++|++.|.+|++||+.+..-+   ..+.+ ...+-.+.++.+.+++++.|++|++|++
T Consensus       270 l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~  347 (499)
T KOG0281|consen  270 LNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST  347 (499)
T ss_pred             hhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEec
Confidence             46778999999999975  68999999999999999764321   12222 2335566778889999999999999999


Q ss_pred             CCCccceeeecccceeeeEEeEEee-CCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      .+.+.+-.     +..+.+.++|.. .+..++.|+.+.++.+|....+...+.+    .+|.         --|.|+.|.
T Consensus       348 st~efvRt-----l~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvL----eGHE---------eLvRciRFd  409 (499)
T KOG0281|consen  348 STCEFVRT-----LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL----EGHE---------ELVRCIRFD  409 (499)
T ss_pred             cceeeehh-----hhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHH----hchH---------Hhhhheeec
Confidence            88664322     222234455544 3345566777888777665555443222    2332         137788884


Q ss_pred             cCCCeEEEecCCCeEEEEeCCCceee---------eecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        245 QEYNTFATGGSDGYVNIWDGFNKKRL---------CQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~~~~~~---------~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                        .+.+++|+.||+|++||+..+...         ..+-.|.+.|..|.|  |...+++.+.++..|.+
T Consensus       410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiW  474 (499)
T KOG0281|consen  410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIW  474 (499)
T ss_pred             --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEE
Confidence              568999999999999998765433         234567889999999  45677777766666655

>KOG0319|consensus

Probab=99.96  E-value=4.7e-27  Score=210.14  Aligned_cols=293  Identities=19%  Similarity=0.209  Sum_probs=227.7

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEE--eCCceEEEEecCCcEEEEEcCCCceeee
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCF--QDAVHSFSGGLDCTLKMFDFNTQTETVI   93 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~--~~~~~~~sgs~Dg~i~vwd~~~~~~~~~   93 (327)
                      ++..+..-+.. ..++....|.++.++|.++.++. ...+..+.|..++|  ++..+++.++..+.+|++++.+..+..+
T Consensus       283 e~~~~~~~~~~-~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii  361 (775)
T KOG0319|consen  283 EIDHLLAIESM-SQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQII  361 (775)
T ss_pred             hhhcceecccc-CceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEE
Confidence            46666666644 34555667999999999998864 45577889999998  5678999999999999999988888899


Q ss_pred             ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc----eeeeeeC-CCcEEEEecC---CCeEEEEeCCCeEEEEEC
Q psy11885         94 GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR----CVGNYTQ-PDKVFTMSLC---GEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~----~~~~~~~-~~~~~~~~~~---~~~~~~~~~d~~v~iwD~  165 (327)
                      .+|+..|.+|....+|.+|+||+.|+++++|.++.+.    +++.... .+.+.++..+   ...|++++.|+++++|++
T Consensus       362 ~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l  441 (775)
T KOG0319|consen  362 PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL  441 (775)
T ss_pred             eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence            9999999999977788899999999999999884432    2333332 2334444443   346899999999999999


Q ss_pred             CCCcc-----ceee--ecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        166 RNMGY-----IMQR--RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       166 ~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      +..+.     ....  ....+.-.++|++.+|++..+++++.+....+|.++.    ......+.+|+.         .|
T Consensus       442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~----~~l~~vLsGH~R---------Gv  508 (775)
T KOG0319|consen  442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ----LRLLGVLSGHTR---------GV  508 (775)
T ss_pred             CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC----ceEEEEeeCCcc---------ce
Confidence            75211     0000  0011222358899999999999999999998866652    233344555543         59


Q ss_pred             eEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCC--------CCCCC
Q psy11885        239 NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETP--------PDPIP  310 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~--------~~~~~  310 (327)
                      +|+.|+|..+.+||+|.|+|||||.+.+...++++.+|...|..+.|=.+|+.|++++++++...+-        ..-.|
T Consensus       509 w~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H  588 (775)
T KOG0319|consen  509 WCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH  588 (775)
T ss_pred             EEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999988766551        22368


Q ss_pred             CCcEEEEEccccc
Q psy11885        311 PNNIFIRHVTDQE  323 (327)
Q Consensus       311 ~~~~~~~~~~~~~  323 (327)
                      .++|.+.++++.+
T Consensus       589 ~DrvWaL~~~~~~  601 (775)
T KOG0319|consen  589 NDRVWALSVSPLL  601 (775)
T ss_pred             cceeEEEeecCcc
Confidence            8999999998765

>KOG0266|consensus

Probab=99.96  E-value=8e-27  Score=213.07  Aligned_cols=239  Identities=23%  Similarity=0.384  Sum_probs=183.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC-e-EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-N-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~-~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      ..|...|++++|+|+ ++++++++.|++|+|||++.. . +....+|...|.+++|+ .++.++||+.|++||+||++++
T Consensus       200 ~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~  278 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG  278 (456)
T ss_pred             cccccceeeeEECCC-CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence            457789999999995 579999999999999999444 5 45556899999999995 6789999999999999999986


Q ss_pred             ce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc--eeeeeeCC-----CcEEEEecCCCeEEEEeCCCeE
Q psy11885         89 TE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR--CVGNYTQP-----DKVFTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        89 ~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~v  160 (327)
                      .. ..+..|.++|.+++|+++++.|++++.|+.|++||+.++.  +...+...     .....+++++.++++++.|+.+
T Consensus       279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~  358 (456)
T KOG0266|consen  279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTL  358 (456)
T ss_pred             eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeE
Confidence            65 4688999999999999999999999999999999999988  55554432     2345567789999999999999


Q ss_pred             EEEECCCCccceeeecccceeeeEEe---EEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885        161 CIWDLRNMGYIMQRRESSLKFQTRCI---KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP  237 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  237 (327)
                      ++||++....+.....+...  ..|+   ...+.+..+++++.++.+.+|..........    +..|.        ...
T Consensus       359 ~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~----l~~h~--------~~~  424 (456)
T KOG0266|consen  359 KLWDLRSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR----LEGHS--------KAA  424 (456)
T ss_pred             EEEEccCCcceeeecccCCc--ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh----hcCCC--------CCc
Confidence            99999977654333322221  1222   2234556677777777777755544322211    12221        235


Q ss_pred             eeEEEEecCCCeEEEec--CCCeEEEEeCC
Q psy11885        238 VNAISFHQEYNTFATGG--SDGYVNIWDGF  265 (327)
Q Consensus       238 v~~v~~spd~~~lasgs--~dg~i~iWd~~  265 (327)
                      +..++++|...++++++  .|+.+++|...
T Consensus       425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            77899999999999998  78999999753

>KOG0306|consensus

Probab=99.96  E-value=1.9e-26  Score=206.62  Aligned_cols=274  Identities=19%  Similarity=0.246  Sum_probs=221.1

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCce-
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTE-   90 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~-   90 (327)
                      -|...|++++|+.+ . .++..+..+.+++|+..+.++....+.. -+.++.| +.+.+++.|...|.+-++|+.+... 
T Consensus       371 GHR~dVRsl~vS~d-~-~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~  447 (888)
T KOG0306|consen  371 GHRSDVRSLCVSSD-S-ILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLV  447 (888)
T ss_pred             cchhheeEEEeecC-c-eeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence            46688999999974 3 4444455789999999999977766544 5667777 5778899999999999999987654 


Q ss_pred             eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC--------Ccee-----eeeeCCCcEE--EEecCCCeEEEEe
Q psy11885         91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS--------SRCV-----GNYTQPDKVF--TMSLCGEKFVVGT  155 (327)
Q Consensus        91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~--------~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~  155 (327)
                      ..+..|++.|++++.+||+..+++||.|.+|++||..-        .+.+     .++.-++.+.  .++|++..++++-
T Consensus       448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL  527 (888)
T KOG0306|consen  448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL  527 (888)
T ss_pred             hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence            46779999999999999999999999999999999631        1111     2233344444  4567788999999


Q ss_pred             CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeE
Q psy11885        156 AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI  235 (327)
Q Consensus       156 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  235 (327)
                      -|++|++|=+.+.+.......+.++  ..|+..+|+...+++++.+.++.+|-++.+.+...+    -         .|.
T Consensus       528 LdnTVkVyflDtlKFflsLYGHkLP--V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~----f---------AHd  592 (888)
T KOG0306|consen  528 LDNTVKVYFLDTLKFFLSLYGHKLP--VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF----F---------AHD  592 (888)
T ss_pred             ccCeEEEEEecceeeeeeecccccc--eeEEeccCCcCeEEeccCCCceEEeccccchhhhhh----h---------ccc
Confidence            9999999999988765444555554  588899999999999999999999888887643221    1         122


Q ss_pred             EEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        236 YPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       236 ~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      ..|.++.|-|+...|.|+|.|+.|+-||..+.+.++++.+|...|+|++.+|+|.++++++.+.....+
T Consensus       593 DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw  661 (888)
T KOG0306|consen  593 DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW  661 (888)
T ss_pred             CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence            358899999999999999999999999999999999999999999999999999999999876655554

>KOG0281|consensus

Probab=99.96  E-value=5.2e-28  Score=199.36  Aligned_cols=241  Identities=17%  Similarity=0.318  Sum_probs=183.4

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      ..|.++|.|+.|..   +.+++||.|.+|+|||+++++. ...+.|..+|..+.|+++ +++|+|.|.+|++||+.+...
T Consensus       234 ~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng-~mvtcSkDrsiaVWdm~sps~  309 (499)
T KOG0281|consen  234 TGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG-YMVTCSKDRSIAVWDMASPTD  309 (499)
T ss_pred             hcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC-EEEEecCCceeEEEeccCchH
Confidence            55889999999984   5899999999999999999995 556689999999999854 889999999999999987653


Q ss_pred             e----eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-EEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         91 T----VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-VFTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        91 ~----~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      .    ++.+|...|+.+.|+.  ++++|++.|.+|++|+..+.+++.++..+.. +.++...+..+++|+.|++||+||+
T Consensus       310 it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi  387 (499)
T KOG0281|consen  310 ITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI  387 (499)
T ss_pred             HHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEec
Confidence            2    4678999999999976  6999999999999999999999999887765 4455667888899999999999999


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      ..++..-.  .+.+....+|+.|.  .+.++.|..+|.+.+|.+..+...+-....++....    .+|...|-.+.|  
T Consensus       388 ~~G~cLRv--LeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~l----v~hsgRVFrLQF--  457 (499)
T KOG0281|consen  388 ECGACLRV--LEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTL----VEHSGRVFRLQF--  457 (499)
T ss_pred             cccHHHHH--HhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhh----hhccceeEEEee--
Confidence            98764311  11222335777764  457889999999999776544322111111111001    122223555555  


Q ss_pred             CCCeEEEecCCCeEEEEeCCCce
Q psy11885        246 EYNTFATGGSDGYVNIWDGFNKK  268 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd~~~~~  268 (327)
                      |...+++.+.|.+|-|||..++-
T Consensus       458 D~fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  458 DEFQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             cceEEEeccCCCeEEEEEcCCCC
Confidence            55679999999999999987754

>KOG0643|consensus

Probab=99.96  E-value=7.7e-27  Score=186.16  Aligned_cols=276  Identities=17%  Similarity=0.242  Sum_probs=204.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      .-||.+++-|.|+.+ +.+|.+++.|.++.||-..+|+. -...+|.++|.+|... +..++++|+.|.++++||+++++
T Consensus         7 ~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk   85 (327)
T KOG0643|consen    7 QGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK   85 (327)
T ss_pred             ccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence            348899999999996 57999999999999998877774 4555799999999984 78899999999999999999998


Q ss_pred             eeeeecCCccEEEEEEeCCCCEEEEEEC-----CCeEEEEeCCC-------CceeeeeeCCC---cEEEEecCCCeEEEE
Q psy11885         90 ETVIGTHDQPIRAVEYSDEVNCILTGSW-----DTSVKMWDPRS-------SRCVGNYTQPD---KVFTMSLCGEKFVVG  154 (327)
Q Consensus        90 ~~~~~~h~~~V~~l~~~~~~~~l~sgs~-----d~~i~lwdl~~-------~~~~~~~~~~~---~~~~~~~~~~~~~~~  154 (327)
                      ....-....+|+.+.|+.+|++++....     -+.|.++|++.       .+++..+.-+.   ....+.+.++.+++|
T Consensus        86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G  165 (327)
T KOG0643|consen   86 QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG  165 (327)
T ss_pred             EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence            8766666789999999999998876643     47899999983       33444443322   234567789999999


Q ss_pred             eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeee
Q psy11885        155 TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEK  234 (327)
Q Consensus       155 ~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~  234 (327)
                      .+||.|.+||++++...... ...+...++.+.++++...+++++.+....++...+-....    .+          ..
T Consensus       166 he~G~is~~da~~g~~~v~s-~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K----ty----------~t  230 (327)
T KOG0643|consen  166 HEDGSISIYDARTGKELVDS-DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK----TY----------TT  230 (327)
T ss_pred             cCCCcEEEEEcccCceeeec-hhhhccccccccccCCcceEEecccCccceeeeccceeeEE----Ee----------ee
Confidence            99999999999986432211 11222245677888999999999999888874443322111    11          12


Q ss_pred             EEEeeEEEEecCCCeEEEe-cCCC-e------------EEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        235 IYPVNAISFHQEYNTFATG-GSDG-Y------------VNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       235 ~~~v~~v~~spd~~~lasg-s~dg-~------------i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      ..|||+.+++|....++-| +++- -            .|+|++---+.+...++|=+||++|||+|||+..++|+.+++
T Consensus       231 e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~  310 (327)
T KOG0643|consen  231 ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY  310 (327)
T ss_pred             cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence            2489999999977666544 3331 1            222332222345566788899999999999999999998876


Q ss_pred             ccC
Q psy11885        301 ELE  303 (327)
Q Consensus       301 ~~~  303 (327)
                      .+.
T Consensus       311 VR~  313 (327)
T KOG0643|consen  311 VRL  313 (327)
T ss_pred             EEE
Confidence            543

>KOG0268|consensus

Probab=99.95  E-value=1.5e-27  Score=197.47  Aligned_cols=276  Identities=16%  Similarity=0.221  Sum_probs=202.2

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      ..|.++|.|++=+|..-..+++|+.||.|+|||+.+..+ ..+.+|.+.|..+++.. ..++++|.|.+|+.|-++....
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~  141 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPL  141 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCcc
Confidence            668899999999996546899999999999999998875 45567999999999865 6788999999999999876533


Q ss_pred             eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-CCcEEEEecCC---CeEEEEeCCCeEEEEECC
Q psy11885         91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKVFTMSLCG---EKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~d~~v~iwD~~  166 (327)
                      ..+.+ +..+..+..+..++.++|+|.  .|-|||.+...++..+.. .+.+.++.+++   ..|+++.+|++|.|+|+|
T Consensus       142 ~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R  218 (433)
T KOG0268|consen  142 HTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR  218 (433)
T ss_pred             eeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc
Confidence            33322 345677777777788888886  688999988888888775 34456666654   347778899999999999


Q ss_pred             CCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC
Q psy11885        167 NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE  246 (327)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd  246 (327)
                      +...+....   +..-.+.++++|..-.+++++.  +-.++.+|.....    ..+..|.      .|.+.|.+++|||.
T Consensus       219 ~~~Pl~KVi---~~mRTN~IswnPeafnF~~a~E--D~nlY~~DmR~l~----~p~~v~~------dhvsAV~dVdfspt  283 (433)
T KOG0268|consen  219 QASPLKKVI---LTMRTNTICWNPEAFNFVAANE--DHNLYTYDMRNLS----RPLNVHK------DHVSAVMDVDFSPT  283 (433)
T ss_pred             cCCccceee---eeccccceecCccccceeeccc--cccceehhhhhhc----ccchhhc------ccceeEEEeccCCC
Confidence            876542221   2223467788884333444433  4445556654321    1111221      45678999999999


Q ss_pred             CCeEEEecCCCeEEEEeCCCceeeeecC-cCCcceEEEEECCCCCEEEEEEccccccCCCC
Q psy11885        247 YNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSLCFSYDGNVLAIACSYNYELETPP  306 (327)
Q Consensus       247 ~~~lasgs~dg~i~iWd~~~~~~~~~~~-~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~  306 (327)
                      |+-|++||.|.+|+||....+..-..++ .-...|.|+.||-|.+++.+|+.++....|.+
T Consensus       284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence            9999999999999999988776543331 23457999999999999999977776666543

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=2.5e-25  Score=204.15  Aligned_cols=223  Identities=14%  Similarity=0.200  Sum_probs=161.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe---------EEEEecCCCceeeEEEe-CCce-EEEEecCCcE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN---------LRLKYAHSDPVLDCCFQ-DAVH-SFSGGLDCTL   80 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~---------~~~~~~h~~~v~~~~~~-~~~~-~~sgs~Dg~i   80 (327)
                      ..|.+.|++++|+|+.+.+|++||.|++|+|||+.++.         +....+|...|.+++|+ .+.. ++|++.|++|
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI  150 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV  150 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence            45778999999999656799999999999999997532         12345689999999996 4544 5699999999


Q ss_pred             EEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc---EEE-----EecCCCeEE
Q psy11885         81 KMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK---VFT-----MSLCGEKFV  152 (327)
Q Consensus        81 ~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~---~~~-----~~~~~~~~~  152 (327)
                      ++||++++.......|...|.+++|+++|.+|++++.|++|++||+++++.+..+..+..   ...     +++++..++
T Consensus       151 rIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il  230 (568)
T PTZ00420        151 NIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL  230 (568)
T ss_pred             EEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEE
Confidence            999998876543334667899999999999999999999999999999988877765432   111     224567788


Q ss_pred             EEeCC----CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeec
Q psy11885        153 VGTAG----RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK  228 (327)
Q Consensus       153 ~~~~d----~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~  228 (327)
                      +++.|    ++|+|||+++......                       ...         .+...               
T Consensus       231 TtG~d~~~~R~VkLWDlr~~~~pl~-----------------------~~~---------ld~~~---------------  263 (568)
T PTZ00420        231 STGFSKNNMREMKLWDLKNTTSALV-----------------------TMS---------IDNAS---------------  263 (568)
T ss_pred             EEEcCCCCccEEEEEECCCCCCceE-----------------------EEE---------ecCCc---------------
Confidence            87766    4799999986321100                       000         01000               


Q ss_pred             cCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC--cCCcceEEEEECCCC
Q psy11885        229 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH--RYDTGITSLCFSYDG  289 (327)
Q Consensus       229 ~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~--~~~~~v~~l~fspdg  289 (327)
                             ..+...-..+++.+|++|+.|++|++|++..+. +..+.  .+..++.+++|.|+-
T Consensus       264 -------~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        264 -------APLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             -------cceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence                   011112224568889999999999999987653 33332  245678899999974

>KOG0293|consensus

Probab=99.95  E-value=2.8e-26  Score=192.84  Aligned_cols=239  Identities=20%  Similarity=0.373  Sum_probs=175.3

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC--CceeeEEE-eCCceEEEEecCCcEEEEEcCCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS--DPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~--~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      ..|..+|.-|.|||| +++|++++.|..+++||+.+|.+...+.+.  ..+.+|+| +++..+++|+.|+++..||++.+
T Consensus       266 vgh~~~V~yi~wSPD-dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn  344 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPD-DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN  344 (519)
T ss_pred             ecccCceEEEEECCC-CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc
Confidence            456789999999996 579999999999999999999988877655  77899998 79999999999999999999877


Q ss_pred             ceee-eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         89 TETV-IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        89 ~~~~-~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      .... -......|.+++..+||+++++...|..|++++.++......+.....+  ++++-++..+++.-.+..+++||+
T Consensus       345 ~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl  424 (519)
T KOG0293|consen  345 ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDL  424 (519)
T ss_pred             hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence            5432 2233467999999999999999999999999999887666555544444  455556778888889999999999


Q ss_pred             CCCccceeeecccc-eeeeEEeEEeeCCC--ceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        166 RNMGYIMQRRESSL-KFQTRCIKCFPNKQ--GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       166 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                      +..+.+.+-..+.. .+.++  .|+...+  .++.|+.++.+.|  |+...  .+....+.+|.         ..|+|++
T Consensus       425 ~e~~lv~kY~Ghkq~~fiIr--SCFgg~~~~fiaSGSED~kvyI--Whr~s--gkll~~LsGHs---------~~vNcVs  489 (519)
T KOG0293|consen  425 EENKLVRKYFGHKQGHFIIR--SCFGGGNDKFIASGSEDSKVYI--WHRIS--GKLLAVLSGHS---------KTVNCVS  489 (519)
T ss_pred             chhhHHHHhhcccccceEEE--eccCCCCcceEEecCCCceEEE--EEccC--CceeEeecCCc---------ceeeEEe
Confidence            86544322111111 11111  2343332  3344455555555  54332  23334455554         3699999


Q ss_pred             EecC-CCeEEEecCCCeEEEEeCCC
Q psy11885        243 FHQE-YNTFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       243 ~spd-~~~lasgs~dg~i~iWd~~~  266 (327)
                      |+|. ..+||+||+||+||||....
T Consensus       490 wNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  490 WNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCCHHHhhccCCCCeEEEecCCc
Confidence            9995 46789999999999997654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=7.3e-25  Score=213.94  Aligned_cols=247  Identities=14%  Similarity=0.160  Sum_probs=175.1

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCCCcee
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~~~   91 (327)
                      ...|.+++|+|..+.+|++++.|++|++||+.+++.. ....|.+.|.+++|+  ++..++||+.|++|++||++++...
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI  611 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence            4578999999866679999999999999999988754 445799999999995  5678999999999999999877653


Q ss_pred             eeecCCccEEEEEEe-CCCCEEEEEECCCeEEEEeCCCCc-eeeeeeCC-CcEEEEec-CCCeEEEEeCCCeEEEEECCC
Q psy11885         92 VIGTHDQPIRAVEYS-DEVNCILTGSWDTSVKMWDPRSSR-CVGNYTQP-DKVFTMSL-CGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus        92 ~~~~h~~~V~~l~~~-~~~~~l~sgs~d~~i~lwdl~~~~-~~~~~~~~-~~~~~~~~-~~~~~~~~~~d~~v~iwD~~~  167 (327)
                      ....+...|.++.|+ +++..|++|+.|++|++||+++.+ .+..+..+ ..+..+.+ ++..+++++.|++|++||++.
T Consensus       612 ~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        612 GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             EEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCC
Confidence            322334678999995 578999999999999999998765 34444433 23444443 577899999999999999974


Q ss_pred             Cc-----cceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeee-eecc-CCeeeEEEeeE
Q psy11885        168 MG-----YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCH-RIKE-DGIEKIYPVNA  240 (327)
Q Consensus       168 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h-~~~~-~~~~~~~~v~~  240 (327)
                      ..     ...... ..+.....++.+.+++..+++++.++.+.+|........  ..+.+... .... ....+...|.+
T Consensus       692 ~~~~~~~~~l~~~-~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~V~~  768 (793)
T PLN00181        692 SISGINETPLHSF-MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV--LSYKFKTIDPVSGLEVDDASQFISS  768 (793)
T ss_pred             CccccCCcceEEE-cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce--EEEecccCCcccccccCCCCcEEEE
Confidence            31     011111 111223456778888888888888888887554322110  00000000 0000 00011235899


Q ss_pred             EEEecCCCeEEEecCCCeEEEEeC
Q psy11885        241 ISFHQEYNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       241 v~~spd~~~lasgs~dg~i~iWd~  264 (327)
                      ++|+|++..|++|+.||+|+||++
T Consensus       769 v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        769 VCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999999999999999986

>KOG0282|consensus

Probab=99.95  E-value=1.4e-26  Score=198.20  Aligned_cols=238  Identities=18%  Similarity=0.271  Sum_probs=184.1

Q ss_pred             EecCCCceeeEEE-e-CCceEEEEecCCcEEEEEcCCC-ce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC
Q psy11885         53 KYAHSDPVLDCCF-Q-DAVHSFSGGLDCTLKMFDFNTQ-TE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS  128 (327)
Q Consensus        53 ~~~h~~~v~~~~~-~-~~~~~~sgs~Dg~i~vwd~~~~-~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~  128 (327)
                      ..+|.+.|.++.| + .+.+++|++.|+.|++|++-.. .+ ..+.+|..+|.+++|+.+|..++|+|.|+.|++||+++
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET  289 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET  289 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence            3479999999998 4 6788899999999999998763 33 35678999999999999999999999999999999999


Q ss_pred             CceeeeeeCCCcEEEE--ecCC-CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEE
Q psy11885        129 SRCVGNYTQPDKVFTM--SLCG-EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAA  205 (327)
Q Consensus       129 ~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (327)
                      |+++..+.......++  .+++ +.|++|+.|+.|+.||+|+++.+ +.....+. ....+.|.+.+..+++++.+...+
T Consensus       290 G~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv-qeYd~hLg-~i~~i~F~~~g~rFissSDdks~r  367 (503)
T KOG0282|consen  290 GQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV-QEYDRHLG-AILDITFVDEGRRFISSSDDKSVR  367 (503)
T ss_pred             ceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH-HHHHhhhh-heeeeEEccCCceEeeeccCccEE
Confidence            9999988876555554  4444 67999999999999999998743 22222232 346778899999999999999888


Q ss_pred             EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceee---eecCcCCcc--e
Q psy11885        206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL---CQFHRYDTG--I  280 (327)
Q Consensus       206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~---~~~~~~~~~--v  280 (327)
                      +|-+...-....+..            .......+++.+|.+..++.-+.|+.|.++.+...-++   ..+.+|..+  -
T Consensus       368 iWe~~~~v~ik~i~~------------~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys  435 (503)
T KOG0282|consen  368 IWENRIPVPIKNIAD------------PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS  435 (503)
T ss_pred             EEEcCCCccchhhcc------------hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence            866654432221111            11235679999999999999999999999987654333   245566543  4


Q ss_pred             EEEEECCCCCEEEEEEccccccCC
Q psy11885        281 TSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       281 ~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      ..|.|||||++|++|.+++....+
T Consensus       436 ~~v~fSpDG~~l~SGdsdG~v~~w  459 (503)
T KOG0282|consen  436 CQVDFSPDGRTLCSGDSDGKVNFW  459 (503)
T ss_pred             eeEEEcCCCCeEEeecCCccEEEe
Confidence            578999999999999887655444

>KOG0285|consensus

Probab=99.95  E-value=1.2e-25  Score=186.09  Aligned_cols=227  Identities=20%  Similarity=0.303  Sum_probs=181.7

Q ss_pred             ecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce
Q psy11885         54 YAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC  131 (327)
Q Consensus        54 ~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~  131 (327)
                      .+|.+-|.|+++ +.+..++||+.|++|++||+.+++.+ .+.+|...|+.+++++-..++++++.|+.|+.|||+.++.
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv  227 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV  227 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence            368889999999 56778889999999999999999875 5678999999999999999999999999999999999999


Q ss_pred             eeeeeCCC-cEEEEe--cCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEE
Q psy11885        132 VGNYTQPD-KVFTMS--LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEY  208 (327)
Q Consensus       132 ~~~~~~~~-~~~~~~--~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  208 (327)
                      +..+..+- .+++++  |.-+.+++++.|.++|+||+|+...+.....+  ......+.+.+.+..+++++.++.+++|.
T Consensus       228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH--~~~V~~V~~~~~dpqvit~S~D~tvrlWD  305 (460)
T KOG0285|consen  228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH--TNPVASVMCQPTDPQVITGSHDSTVRLWD  305 (460)
T ss_pred             HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC--CCcceeEEeecCCCceEEecCCceEEEee
Confidence            98877643 355554  44678999999999999999987655433222  23346677788888889999999888755


Q ss_pred             ccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCC
Q psy11885        209 LDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  288 (327)
Q Consensus       209 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspd  288 (327)
                      ...+..    ...+..|.         -.+.+++.||+-..||++|.| .|+-|++..|..++.+.+|..-|++|+.+.|
T Consensus       306 l~agkt----~~tlt~hk---------ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD  371 (460)
T KOG0285|consen  306 LRAGKT----MITLTHHK---------KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSD  371 (460)
T ss_pred             eccCce----eEeeeccc---------ceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccC
Confidence            433321    22222232         258899999999999999876 5899999999999999999999999999998


Q ss_pred             CCEEEEEEc
Q psy11885        289 GNVLAIACS  297 (327)
Q Consensus       289 g~~la~~~~  297 (327)
                      | ++++|+.
T Consensus       372 ~-v~~~G~d  379 (460)
T KOG0285|consen  372 G-VLVSGGD  379 (460)
T ss_pred             c-eEEEcCC
Confidence            7 5556643

>KOG0973|consensus

Probab=99.94  E-value=2.3e-25  Score=207.28  Aligned_cols=277  Identities=17%  Similarity=0.276  Sum_probs=203.0

Q ss_pred             eecCCCCCCCeeEEEEecCCCcEEEEEE--CCCcEEEEECCCC------------e-EEEEecCCCceeeEEEe-CCceE
Q psy11885          8 YSLNSPPEDGITAVKFAPNSNQFLLASS--WDCNVSLYDITNN------------N-LRLKYAHSDPVLDCCFQ-DAVHS   71 (327)
Q Consensus         8 ~~~~~~~~~~I~~i~fs~~~~~~l~s~~--~d~~i~iwd~~~~------------~-~~~~~~h~~~v~~~~~~-~~~~~   71 (327)
                      +.+-.+++..|.+|..+|+ +..++|||  .|+.++||+.+.-            + +-....|.+.|.|+.|+ ++.++
T Consensus         6 p~wv~H~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~l   84 (942)
T KOG0973|consen    6 PTWVNHNEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYL   84 (942)
T ss_pred             ccccccCCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeE
Confidence            3444667788999999996 57899999  9999999986420            1 11233588999999995 89999


Q ss_pred             EEEecCCcEEEEEcCC----------C---------ceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee
Q psy11885         72 FSGGLDCTLKMFDFNT----------Q---------TETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV  132 (327)
Q Consensus        72 ~sgs~Dg~i~vwd~~~----------~---------~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~  132 (327)
                      ++||.|+.|-+|+...          +         ....+.+|+..|..++|+|++.++++++.|++|-+||.++.+++
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~  164 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL  164 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence            9999999999998762          0         01246789999999999999999999999999999999999888


Q ss_pred             eeeeCCC---cEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecc----cceeeeEEeEEeeCCCceEEEee--cCe
Q psy11885        133 GNYTQPD---KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRES----SLKFQTRCIKCFPNKQGYVLSSI--EGR  203 (327)
Q Consensus       133 ~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~  203 (327)
                      ..+..+.   .-..++|-|++|++=+.|++|++|++......+.+.+.    .+......+.++|+++.+++...  ++.
T Consensus       165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~  244 (942)
T KOG0973|consen  165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK  244 (942)
T ss_pred             eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence            8876543   44678888999999999999999997654432222111    11222356778899887776432  223


Q ss_pred             EEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC-------------CC----eEEEecCCCeEEEEeCCC
Q psy11885        204 AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-------------YN----TFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       204 ~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd-------------~~----~lasgs~dg~i~iWd~~~  266 (327)
                      ..+.+.+.+. + +....+         ++|..|+.+++|+|.             +.    .+|+||.|++|-||....
T Consensus       245 ~~~~IieR~t-W-k~~~~L---------vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  245 STIAIIERGT-W-KVDKDL---------VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             ceeEEEecCC-c-eeeeee---------ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            3333333311 1 111112         234458999999983             11    689999999999999877


Q ss_pred             ceeeeecC-cCCcceEEEEECCCCCEEEEEE
Q psy11885        267 KKRLCQFH-RYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       267 ~~~~~~~~-~~~~~v~~l~fspdg~~la~~~  296 (327)
                      .+++..++ -+...|..++|||||..|.+.+
T Consensus       314 ~RPl~vi~~lf~~SI~DmsWspdG~~LfacS  344 (942)
T KOG0973|consen  314 PRPLFVIHNLFNKSIVDMSWSPDGFSLFACS  344 (942)
T ss_pred             CCchhhhhhhhcCceeeeeEcCCCCeEEEEe
Confidence            77766543 3456899999999999997655

>KOG0265|consensus

Probab=99.94  E-value=2.4e-25  Score=180.33  Aligned_cols=236  Identities=18%  Similarity=0.246  Sum_probs=177.7

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      ..|.+.|..+.|.++ +..++++|.|.+++.||+++|+... ...|..-|+++.-.  ....+.||+.|+++|+||++++
T Consensus        87 kgHsgAVM~l~~~~d-~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k  165 (338)
T KOG0265|consen   87 KGHSGAVMELHGMRD-GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK  165 (338)
T ss_pred             ccccceeEeeeeccC-CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence            367889999999996 5789999999999999999999654 44688878877733  2345569999999999999877


Q ss_pred             ceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         89 TETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        89 ~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      ....+.....+++++.|..++..+.+|+-|+.|++||++.++....+..+. .+  +..++.|..+++-+.|.++++||+
T Consensus       166 ~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~  245 (338)
T KOG0265|consen  166 EAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV  245 (338)
T ss_pred             chhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence            655444456789999999999999999999999999999999988887643 34  445667889999999999999999


Q ss_pred             CCCccc----eeeecccceeeeE--EeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        166 RNMGYI----MQRRESSLKFQTR--CIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       166 ~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      |-...-    .......+.+..+  ..+++|+...+-+++.+....+  |++..  +...+-+.+|         ...|+
T Consensus       246 rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyv--wd~~~--r~~lyklpGh---------~gsvn  312 (338)
T KOG0265|consen  246 RPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYV--WDTTS--RRILYKLPGH---------YGSVN  312 (338)
T ss_pred             cccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEE--eeccc--ccEEEEcCCc---------ceeEE
Confidence            854321    1111111222212  2345677777777777766665  55432  2333444443         44799


Q ss_pred             EEEEecCCCeEEEecCCCeEEE
Q psy11885        240 AISFHQEYNTFATGGSDGYVNI  261 (327)
Q Consensus       240 ~v~~spd~~~lasgs~dg~i~i  261 (327)
                      +++|+|...+|.+++.|.+|++
T Consensus       313 ~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  313 EVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             EeeecCCCcEEEEeccCceeEe
Confidence            9999999999999999999976

>KOG0295|consensus

Probab=99.94  E-value=1.3e-25  Score=186.17  Aligned_cols=231  Identities=19%  Similarity=0.244  Sum_probs=173.5

Q ss_pred             EecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC-C
Q psy11885         53 KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS-S  129 (327)
Q Consensus        53 ~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-~  129 (327)
                      ..+|-.+|..+-|+ .-..+++++.|++|++||..+++. ..+.+|+..|.++.|+..|+++++++.|-.+++||..+ .
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~  183 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF  183 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH
Confidence            34577788888885 556777999999999999998876 35789999999999999999999999999999999976 4


Q ss_pred             ceeeeeeCCCc---EEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEE
Q psy11885        130 RCVGNYTQPDK---VFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAV  206 (327)
Q Consensus       130 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  206 (327)
                      +|+.....+..   ...+-+.|+.+++++.|++|+.||+.++-.+.....+..  -.+.++.+.++..++.++.++++.+
T Consensus       184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti~As~s~dqtl~v  261 (406)
T KOG0295|consen  184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTIIASCSNDQTLRV  261 (406)
T ss_pred             HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeEEEecCCCceEEE
Confidence            56665554433   345667799999999999999999998754433322221  1244444444444445555666666


Q ss_pred             EEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC---------------CCeEEEecCCCeEEEEeCCCceeee
Q psy11885        207 EYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE---------------YNTFATGGSDGYVNIWDGFNKKRLC  271 (327)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd---------------~~~lasgs~dg~i~iWd~~~~~~~~  271 (327)
                      |...+...    +..++.|.         .+|.|++|-|.               +++++++|.|++||+||+.++..+.
T Consensus       262 W~~~t~~~----k~~lR~hE---------h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~  328 (406)
T KOG0295|consen  262 WVVATKQC----KAELREHE---------HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF  328 (406)
T ss_pred             EEeccchh----hhhhhccc---------cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence            55554322    11223332         36777887774               2589999999999999999999999


Q ss_pred             ecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        272 QFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       272 ~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      ++.+|...|..++|||-|+||++...+
T Consensus       329 tL~ghdnwVr~~af~p~Gkyi~ScaDD  355 (406)
T KOG0295|consen  329 TLVGHDNWVRGVAFSPGGKYILSCADD  355 (406)
T ss_pred             EEecccceeeeeEEcCCCeEEEEEecC
Confidence            999999999999999999999987653

>KOG0305|consensus

Probab=99.94  E-value=1.4e-24  Score=192.27  Aligned_cols=241  Identities=19%  Similarity=0.260  Sum_probs=184.2

Q ss_pred             ecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEec-CCCceeeEEEeCCceEEEEecCCcEEEEEcC
Q psy11885          9 SLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYA-HSDPVLDCCFQDAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus         9 ~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      .+.+-+++.|++++|+++ +.+|++|-.+|.|.|||.+..+ ...... |...|-+++|. ...+.+|+.|+.|..+|++
T Consensus       211 ~l~~~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR  288 (484)
T KOG0305|consen  211 ELCSFGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVR  288 (484)
T ss_pred             EeEecCCCceEEEEECCC-CCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEe
Confidence            333334789999999995 5899999999999999998876 344445 88889999997 6678899999999999998


Q ss_pred             CCcee--eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-CCcEEEEecC---CCeEEEE--eCCC
Q psy11885         87 TQTET--VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKVFTMSLC---GEKFVVG--TAGR  158 (327)
Q Consensus        87 ~~~~~--~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~--~~d~  158 (327)
                      .....  .+.+|...|..+.|++|++++++|+.|+.+.+||....++...+.. ...+.++++|   ...||+|  +.|+
T Consensus       289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR  368 (484)
T ss_pred             cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence            76532  3678999999999999999999999999999999977666666544 3345555555   3457775  5799


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCe--EEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGR--AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      .|++||..+++.+.   ......++..+.+.+..+.++++.....  +.||.+-.-    +....+.+|.         .
T Consensus       369 ~i~fwn~~~g~~i~---~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~----~~~~~l~gH~---------~  432 (484)
T KOG0305|consen  369 CIKFWNTNTGARID---SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM----KLVAELLGHT---------S  432 (484)
T ss_pred             EEEEEEcCCCcEec---ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc----ceeeeecCCc---------c
Confidence            99999999776432   2233456778888988888887655444  455444331    1222333443         4


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCc
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNK  267 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~  267 (327)
                      .|-.++++|||..+++|+.|.++++|++.+.
T Consensus       433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  433 RVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            5889999999999999999999999998875

>KOG0643|consensus

Probab=99.94  E-value=5.5e-25  Score=175.62  Aligned_cols=245  Identities=18%  Similarity=0.290  Sum_probs=177.7

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEe-----cCCcEEEEEc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGG-----LDCTLKMFDF   85 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs-----~Dg~i~vwd~   85 (327)
                      .-|.+.|.|+..+.+ ...|++|+.|.++++||+++|+....+....+|..+.|+ .+++++...     ..+.|.++|+
T Consensus        49 ~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi  127 (327)
T KOG0643|consen   49 DGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDI  127 (327)
T ss_pred             cCCCceEEEEEecCC-cceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEc
Confidence            457889999999985 478999999999999999999988888888899999997 455444332     2367899998


Q ss_pred             CC-------Cc-eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee-eeeeCC---CcEEEEecCCCeEEE
Q psy11885         86 NT-------QT-ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV-GNYTQP---DKVFTMSLCGEKFVV  153 (327)
Q Consensus        86 ~~-------~~-~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~-~~~~~~---~~~~~~~~~~~~~~~  153 (327)
                      +.       .. ...+..++..++..-|.|.++.|++|..||.|..||+++++.+ .....+   ..-+.++++...+++
T Consensus       128 ~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT  207 (327)
T KOG0643|consen  128 RDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT  207 (327)
T ss_pred             cCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe
Confidence            73       22 2346678899999999999999999999999999999998543 332222   223456677888999


Q ss_pred             EeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCC--
Q psy11885        154 GTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDG--  231 (327)
Q Consensus       154 ~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~--  231 (327)
                      ++.|.+-++||+++...+.. ..  ...+.++.+++|..+..+++....-..|.-.....  .+....+ .|...++.  
T Consensus       208 ~s~Dttakl~D~~tl~v~Kt-y~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~--GKFEArF-yh~i~eEEig  281 (327)
T KOG0643|consen  208 GSKDTTAKLVDVRTLEVLKT-YT--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRA--GKFEARF-YHLIFEEEIG  281 (327)
T ss_pred             cccCccceeeeccceeeEEE-ee--ecccccceecccccceEEecCCceeeeeeeecccc--cchhhhH-HHHHHHHHhc
Confidence            99999999999998764322 22  22345788888888877777654443432222211  1111000 12111111  


Q ss_pred             --eeeEEEeeEEEEecCCCeEEEecCCCeEEEEe
Q psy11885        232 --IEKIYPVNAISFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       232 --~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd  263 (327)
                        .+|..|||+++|||+|+..+||++||.||+.-
T Consensus       282 rvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  282 RVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             cccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence              25778999999999999999999999999974

>KOG0294|consensus

Probab=99.94  E-value=5.4e-24  Score=173.59  Aligned_cols=254  Identities=19%  Similarity=0.294  Sum_probs=178.4

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEEe-CC--ceEEEEecCCcEEEEEcC
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCFQ-DA--VHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~~-~~--~~~~sgs~Dg~i~vwd~~   86 (327)
                      .++|.+.|+++|.+   +.++|+||.|.+|+|||+.... +.....|.+.|+++.|. +.  ++|+||+.||.|.+|+..
T Consensus        39 ~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   39 FSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             ccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            46789999999988   3799999999999999998766 55667899999999994 32  399999999999999987


Q ss_pred             CCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee--eeCCCcEEEEecCCCeEEEEeCCCeEEEE
Q psy11885         87 TQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN--YTQPDKVFTMSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        87 ~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iw  163 (327)
                      +-.. ..+..|.+.|+.|+.+|.+++-++.+.|+.+|+|||-+|+.-..  +......+.+++.|++|+.+.. +.|-+|
T Consensus       116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~  194 (362)
T KOG0294|consen  116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIY  194 (362)
T ss_pred             CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEE
Confidence            6543 46788999999999999999999999999999999988775443  3344456777888998887754 568899


Q ss_pred             ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      .+.+...... .+..  ....|+. +-+...+++|..+..+.+  +|...  ......+..|..+         |..+.+
T Consensus       195 q~d~A~v~~~-i~~~--~r~l~~~-~l~~~~L~vG~d~~~i~~--~D~ds--~~~~~~~~AH~~R---------VK~i~~  257 (362)
T KOG0294|consen  195 QLDNASVFRE-IENP--KRILCAT-FLDGSELLVGGDNEWISL--KDTDS--DTPLTEFLAHENR---------VKDIAS  257 (362)
T ss_pred             ecccHhHhhh-hhcc--ccceeee-ecCCceEEEecCCceEEE--eccCC--Cccceeeecchhh---------eeeeEE
Confidence            8876442211 1111  0112222 223345555655544444  55443  2233445556543         444542


Q ss_pred             --ecCCCeEEEecCCCeEEEEeCCCc-----eeeeecCcCCcceEEEEEC
Q psy11885        244 --HQEYNTFATGGSDGYVNIWDGFNK-----KRLCQFHRYDTGITSLCFS  286 (327)
Q Consensus       244 --spd~~~lasgs~dg~i~iWd~~~~-----~~~~~~~~~~~~v~~l~fs  286 (327)
                        .|++.+|+|+|.||.|+|||++..     +.+..+.- ..+++|+...
T Consensus       258 ~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~  306 (362)
T KOG0294|consen  258 YTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVK  306 (362)
T ss_pred             EecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeeh
Confidence              578899999999999999998654     23332221 3455666554

>KOG0296|consensus

Probab=99.93  E-value=6.9e-24  Score=175.99  Aligned_cols=235  Identities=16%  Similarity=0.269  Sum_probs=175.3

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-CCCceeeEEEe-CCceEEEEecCCcEEEEEcCC-C
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT-Q   88 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~-~   88 (327)
                      ..|++.|+++.|+.+ +.+||||+++|.|+||+..++....... .-..+--++|+ .+..+++|+.||.+-+|.+.+ .
T Consensus       103 tgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~  181 (399)
T KOG0296|consen  103 TGHKDSVTCCSFSHD-GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA  181 (399)
T ss_pred             cCCCCceEEEEEccC-ceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence            448899999999995 6899999999999999999987554443 23345556675 677888999999999999998 4


Q ss_pred             ceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC------C------------------------
Q psy11885         89 TETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ------P------------------------  138 (327)
Q Consensus        89 ~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~------~------------------------  138 (327)
                      ..+.+.+|+.++++=+|.|+|+++++++.||+|++||+.++.++..+.+      +                        
T Consensus       182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~  261 (399)
T KOG0296|consen  182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN  261 (399)
T ss_pred             eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence            5678899999999999999999999999999999999999887655431      0                        


Q ss_pred             ---CcEEEEecCC-------------------------CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEee
Q psy11885        139 ---DKVFTMSLCG-------------------------EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFP  190 (327)
Q Consensus       139 ---~~~~~~~~~~-------------------------~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (327)
                         .++..+ .++                         ..+|+|+.||+|.|||+........   -.++.....+.+.+
T Consensus       262 ~~sgKVv~~-~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~---c~he~~V~~l~w~~  337 (399)
T KOG0296|consen  262 NGSGKVVNC-NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI---CEHEDGVTKLKWLN  337 (399)
T ss_pred             cccceEEEe-cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee---ccCCCceEEEEEcC
Confidence               000000 010                         1256788999999999976442211   11222234555666


Q ss_pred             CCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885        191 NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       191 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~  265 (327)
                       ...+++++.+|.+..  ||.+.  .+.+..+.+|..         +|.+++++|+.+.++|+|.|++.+||+..
T Consensus       338 -t~~l~t~c~~g~v~~--wDaRt--G~l~~~y~GH~~---------~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  338 -TDYLLTACANGKVRQ--WDART--GQLKFTYTGHQM---------GILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             -cchheeeccCceEEe--eeccc--cceEEEEecCch---------heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence             567888999988777  44433  234455555543         68999999999999999999999999864

>KOG0308|consensus

Probab=99.93  E-value=3.1e-25  Score=196.07  Aligned_cols=245  Identities=20%  Similarity=0.348  Sum_probs=189.0

Q ss_pred             CCCee---EEEEecCCCcEEEEEECCCcEEEEECCCCe-------EEEEecCCCceeeEEE-eCCceEEEEecCCcEEEE
Q psy11885         15 EDGIT---AVKFAPNSNQFLLASSWDCNVSLYDITNNN-------LRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        15 ~~~I~---~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vw   83 (327)
                      ...|+   ++..+...+++|++||.||.|++|+.....       ......|.+-|+.++. ..+..++|+|.|.+|++|
T Consensus        21 ~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W  100 (735)
T KOG0308|consen   21 RNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVW  100 (735)
T ss_pred             cccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEe
Confidence            34555   777776677899999999999999986532       1223458888888887 477799999999999999


Q ss_pred             EcCCCc---eeeeecCCccEEEEEE-eCCCCEEEEEECCCeEEEEeCCCC--ceeeeee---------C-CCcEEEEecC
Q psy11885         84 DFNTQT---ETVIGTHDQPIRAVEY-SDEVNCILTGSWDTSVKMWDPRSS--RCVGNYT---------Q-PDKVFTMSLC  147 (327)
Q Consensus        84 d~~~~~---~~~~~~h~~~V~~l~~-~~~~~~l~sgs~d~~i~lwdl~~~--~~~~~~~---------~-~~~~~~~~~~  147 (327)
                      +.....   ..++..|++.|.+|++ .++...++|||-|+.|.+||++++  ..++.+.         . ...+++++.+
T Consensus       101 ~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N  180 (735)
T KOG0308|consen  101 NAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN  180 (735)
T ss_pred             ecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC
Confidence            987663   2467899999999999 788889999999999999999977  2333322         1 1245666655


Q ss_pred             --CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeee
Q psy11885        148 --GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCH  225 (327)
Q Consensus       148 --~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h  225 (327)
                        +..+++|+..+.+++||-|+.+.++..+                                                +|
T Consensus       181 ~t~t~ivsGgtek~lr~wDprt~~kimkLr------------------------------------------------GH  212 (735)
T KOG0308|consen  181 QTGTIIVSGGTEKDLRLWDPRTCKKIMKLR------------------------------------------------GH  212 (735)
T ss_pred             CcceEEEecCcccceEEeccccccceeeee------------------------------------------------cc
Confidence              4478888899999999988754332211                                                12


Q ss_pred             eeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCC
Q psy11885        226 RIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETP  305 (327)
Q Consensus       226 ~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~  305 (327)
                      +         -.|.++-.++||..++|||.||+|++||+...+.+.++..|...||++.-+|+=.++.+|+.++..+-++
T Consensus       213 T---------dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td  283 (735)
T KOG0308|consen  213 T---------DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTD  283 (735)
T ss_pred             c---------cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence            1         1366788899999999999999999999999889999999999999999999999999888777666553


Q ss_pred             CCCCCCCcEEEE
Q psy11885        306 PDPIPPNNIFIR  317 (327)
Q Consensus       306 ~~~~~~~~~~~~  317 (327)
                       .+-+.+...|+
T Consensus       284 -l~n~~~~tlic  294 (735)
T KOG0308|consen  284 -LRNPAKSTLIC  294 (735)
T ss_pred             -cCCchhheEee
Confidence             33345665554

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=1.6e-23  Score=191.17  Aligned_cols=226  Identities=15%  Similarity=0.213  Sum_probs=161.7

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE--------------EEecCCCceeeEEEe--CCceEEEEecCC
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR--------------LKYAHSDPVLDCCFQ--DAVHSFSGGLDC   78 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~--------------~~~~h~~~v~~~~~~--~~~~~~sgs~Dg   78 (327)
                      -..|+...+++++ ..+++++.+..+..|+..++...              .+.+|.++|.+++|+  ++..+++|+.|+
T Consensus        20 ~~~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         20 FLNVTPSTALWDC-SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             eeccccccccCCC-CCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            3566777777753 34677777777788876544321              244689999999995  567899999999


Q ss_pred             cEEEEEcCCCc--------eeeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEec
Q psy11885         79 TLKMFDFNTQT--------ETVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSL  146 (327)
Q Consensus        79 ~i~vwd~~~~~--------~~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~  146 (327)
                      +|++||+....        ...+.+|...|.+++|+|++ +.|++|+.|++|++||+++++.+..+..+ ..+  +.+++
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp  178 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL  178 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence            99999997542        23467899999999999975 68999999999999999999887777643 334  45666


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeee
Q psy11885        147 CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR  226 (327)
Q Consensus       147 ~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~  226 (327)
                      ++..+++++.|++|++||+++.+.+..            +                                    ..|.
T Consensus       179 dG~lLatgs~Dg~IrIwD~rsg~~v~t------------l------------------------------------~~H~  210 (493)
T PTZ00421        179 DGSLLCTTSKDKKLNIIDPRDGTIVSS------------V------------------------------------EAHA  210 (493)
T ss_pred             CCCEEEEecCCCEEEEEECCCCcEEEE------------E------------------------------------ecCC
Confidence            788999999999999999986532100            0                                    0000


Q ss_pred             eccCCeeeEEEeeEEEEecCCCeEEEec----CCCeEEEEeCCCcee-eeecCcC-CcceEEEEECCCCCEEEEEEc
Q psy11885        227 IKEDGIEKIYPVNAISFHQEYNTFATGG----SDGYVNIWDGFNKKR-LCQFHRY-DTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       227 ~~~~~~~~~~~v~~v~~spd~~~lasgs----~dg~i~iWd~~~~~~-~~~~~~~-~~~v~~l~fspdg~~la~~~~  297 (327)
                      ..        ....+.|+|++..|++++    .|++|++||+++... +.....+ ...+....|+||+++|++++.
T Consensus       211 ~~--------~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk  279 (493)
T PTZ00421        211 SA--------KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK  279 (493)
T ss_pred             CC--------cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence            00        012356677777776543    579999999987543 2222222 234666789999999999874

>KOG0274|consensus

Probab=99.93  E-value=8.2e-24  Score=193.58  Aligned_cols=260  Identities=19%  Similarity=0.289  Sum_probs=199.5

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EE-EecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RL-KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~-~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      .+...+++..|+.   .++++++.|.+|++||..++.. .. ..+|.+.|.+++|+ .+..+++|+.|.++|+||..++.
T Consensus       206 ~~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  206 TDDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             cCcchhhhheeec---CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence            3556889999994   3789999999999999999884 44 56899999999996 47899999999999999999988


Q ss_pred             ee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee-CCCcEEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885         90 ET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFTMSLCGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus        90 ~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~  167 (327)
                      +. .+.+|...|.++...+  ..+++|+.|.+|++|+++++.++..+. +...+.++..++..+++|+.|++|++||.++
T Consensus       283 C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~  360 (537)
T KOG0274|consen  283 CTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRT  360 (537)
T ss_pred             EEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhh
Confidence            74 6778999999887654  678889999999999999999999988 4556788888899999999999999999998


Q ss_pred             CccceeeecccceeeeEEeEEeeCC-CceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC
Q psy11885        168 MGYIMQRRESSLKFQTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE  246 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd  246 (327)
                      ++.+.....+...  ..++  ..+. +.++.++.++.+.+|......   +....+..|..         -+..+  ...
T Consensus       361 ~~cl~sl~gH~~~--V~sl--~~~~~~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~---------~v~~l--~~~  422 (537)
T KOG0274|consen  361 GKCLKSLSGHTGR--VYSL--IVDSENRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTS---------LVSSL--LLR  422 (537)
T ss_pred             ceeeeeecCCcce--EEEE--EecCcceEEeeeeccceEeecCCchh---hhhhhhcCCcc---------ccccc--ccc
Confidence            7765544443322  2333  2333 667788888777775544321   12222333321         23333  346


Q ss_pred             CCeEEEecCCCeEEEEeCCCceeeeecCc-CCcceEEEEECCCCCEEEEEEc
Q psy11885        247 YNTFATGGSDGYVNIWDGFNKKRLCQFHR-YDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       247 ~~~lasgs~dg~i~iWd~~~~~~~~~~~~-~~~~v~~l~fspdg~~la~~~~  297 (327)
                      ++.|++++.|++|++||..+++.++.+.. +...|..+++.  ...++.++.
T Consensus       423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~  472 (537)
T KOG0274|consen  423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSD  472 (537)
T ss_pred             cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEec
Confidence            78999999999999999999999999887 56789999987  234444443

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=4.3e-23  Score=189.53  Aligned_cols=219  Identities=14%  Similarity=0.176  Sum_probs=155.5

Q ss_pred             EECCCcEEEEECCCCeE-EEEecCCCceeeEEEeC--CceEEEEecCCcEEEEEcCCCc---------eeeeecCCccEE
Q psy11885         34 SSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQD--AVHSFSGGLDCTLKMFDFNTQT---------ETVIGTHDQPIR  101 (327)
Q Consensus        34 ~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~~--~~~~~sgs~Dg~i~vwd~~~~~---------~~~~~~h~~~V~  101 (327)
                      ||.++.|++|+...... ....+|.++|.+++|++  +..++|||.|++|++||+.+..         ...+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            56788999999876553 44557999999999963  6789999999999999997532         124578999999


Q ss_pred             EEEEeCCCCE-EEEEECCCeEEEEeCCCCceeeeeeCCCcEE--EEecCCCeEEEEeCCCeEEEEECCCCccceeeeccc
Q psy11885        102 AVEYSDEVNC-ILTGSWDTSVKMWDPRSSRCVGNYTQPDKVF--TMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESS  178 (327)
Q Consensus       102 ~l~~~~~~~~-l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~  178 (327)
                      +++|+|++.. +++++.|++|++||+++++....+..+..+.  +++++|..+++++.|+.|+|||+++++.+..     
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t-----  204 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS-----  204 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE-----
Confidence            9999998876 4699999999999999988766665544444  4566788899999999999999987542100     


Q ss_pred             ceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCC-
Q psy11885        179 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG-  257 (327)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg-  257 (327)
                             +.                                    .|...    .....+....|++++.+|+|+|.|+ 
T Consensus       205 -------l~------------------------------------gH~g~----~~s~~v~~~~fs~d~~~IlTtG~d~~  237 (568)
T PTZ00420        205 -------FH------------------------------------IHDGG----KNTKNIWIDGLGGDDNYILSTGFSKN  237 (568)
T ss_pred             -------Ee------------------------------------cccCC----ceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence                   00                                    00000    0000133456789999999988774 


Q ss_pred             ---eEEEEeCCC-ceeeeec--CcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        258 ---YVNIWDGFN-KKRLCQF--HRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       258 ---~i~iWd~~~-~~~~~~~--~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                         +|+|||+++ .+.+...  ..+...+...-.+++|.++++|+++.....+
T Consensus       238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~  290 (568)
T PTZ00420        238 NMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYY  290 (568)
T ss_pred             CccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEE
Confidence               799999885 3444433  2233344455556779999999876544443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=5.5e-23  Score=175.66  Aligned_cols=236  Identities=23%  Similarity=0.371  Sum_probs=175.1

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|...+..+.|+|+ +.++++++.|+.|++||+.+++ ......|...+.++.|. ++..+++++.|+.|++||+.+..
T Consensus        48 ~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  126 (289)
T cd00200          48 KGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK  126 (289)
T ss_pred             ecCCcceeEEEECCC-CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE
Confidence            446678899999995 4789999999999999999865 34445687889999996 44566677779999999998655


Q ss_pred             e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      . ..+..|...|.+++|+|++.++++++.|+.|++||+++++.+..+..+. .+  +.+.+.+..+++++.++.|++||+
T Consensus       127 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~  206 (289)
T cd00200         127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL  206 (289)
T ss_pred             EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEEC
Confidence            4 3456788899999999998888888889999999999888777766443 33  445556668999999999999999


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      +..+......  .......++.+.+++..++.++.++.+.++.......    ...+..|         ...+.+++|+|
T Consensus       207 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~----~~~~~~~---------~~~i~~~~~~~  271 (289)
T cd00200         207 STGKCLGTLR--GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC----VQTLSGH---------TNSVTSLAWSP  271 (289)
T ss_pred             CCCceecchh--hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee----EEEcccc---------CCcEEEEEECC
Confidence            8755432221  1122456677777755555555477777655443221    1111222         12588999999


Q ss_pred             CCCeEEEecCCCeEEEEe
Q psy11885        246 EYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd  263 (327)
                      +++.|++++.||.|++|+
T Consensus       272 ~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         272 DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCEEEEecCCCeEEecC
Confidence            999999999999999996

>KOG0647|consensus

Probab=99.93  E-value=4.7e-24  Score=173.01  Aligned_cols=230  Identities=19%  Similarity=0.238  Sum_probs=168.2

Q ss_pred             cCCCceeeEEEeC--CceEEEEecCCcEEEEEcCCC-c--eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC
Q psy11885         55 AHSDPVLDCCFQD--AVHSFSGGLDCTLKMFDFNTQ-T--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS  129 (327)
Q Consensus        55 ~h~~~v~~~~~~~--~~~~~sgs~Dg~i~vwd~~~~-~--~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~  129 (327)
                      ...+.|.+++|++  ...+++||+|++||+|+++.. .  .+....|+++|.+++|+.||..+++|+.|+.+++|||.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            3457889999964  445669999999999999863 2  2345679999999999999999999999999999999999


Q ss_pred             ceeeeeeCCCcEEEEe--cCCC--eEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEE
Q psy11885        130 RCVGNYTQPDKVFTMS--LCGE--KFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAA  205 (327)
Q Consensus       130 ~~~~~~~~~~~~~~~~--~~~~--~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (327)
                      +..+.-.+...+..+.  ....  .|++|++|++|+.||+|+...+...     ..+.++.+...-.+..+++..+..++
T Consensus       105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~-----~LPeRvYa~Dv~~pm~vVata~r~i~  179 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL-----QLPERVYAADVLYPMAVVATAERHIA  179 (347)
T ss_pred             CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee-----eccceeeehhccCceeEEEecCCcEE
Confidence            7654433333333333  3333  6899999999999999976654332     22335555555556778888888888


Q ss_pred             EEEccCCcccc-cceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceee--eecCcCC-----
Q psy11885        206 VEYLDTGPEMQ-KMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL--CQFHRYD-----  277 (327)
Q Consensus       206 i~~~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~--~~~~~~~-----  277 (327)
                      ++.+...+.+. .....+            .+.+.||+..+|.+.+|.||-.|.+.|-.+..+...  ..|+-|.     
T Consensus       180 vynL~n~~te~k~~~SpL------------k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~  247 (347)
T KOG0647|consen  180 VYNLENPPTEFKRIESPL------------KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV  247 (347)
T ss_pred             EEEcCCCcchhhhhcCcc------------cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence            87775544322 111111            235789999999999999999999999988776332  2233222     


Q ss_pred             ----cceEEEEECCCCCEEEEEEccccc
Q psy11885        278 ----TGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       278 ----~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                          .+|++|+|+|.-..||++++++-+
T Consensus       248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf  275 (347)
T KOG0647|consen  248 NDDVYAVNSIAFHPVHGTLVTAGSDGTF  275 (347)
T ss_pred             CCceEEecceEeecccceEEEecCCceE
Confidence                258889999999999999997654

>KOG0641|consensus

Probab=99.93  E-value=5.2e-23  Score=160.88  Aligned_cols=238  Identities=20%  Similarity=0.283  Sum_probs=180.4

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCC-----------C---eEE--EEecCCCceeeEEEe-CCceEEEEecCC
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITN-----------N---NLR--LKYAHSDPVLDCCFQ-DAVHSFSGGLDC   78 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~-----------~---~~~--~~~~h~~~v~~~~~~-~~~~~~sgs~Dg   78 (327)
                      ..|++++|+|. +.+.++|+...+.+|-....           .   ...  ....|.+.|.|.+|+ .+..+++||.|.
T Consensus        33 qairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   33 QAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hheeeEEecCC-CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            57899999996 46889999999998875311           0   111  223578899999996 788999999999


Q ss_pred             cEEEEEcCCCc------eeeeecCCccEEEEEEeCC----CCEEEEEEC-CCeEEEEeCCCCceeeeeeCC-CcEEE-Ee
Q psy11885         79 TLKMFDFNTQT------ETVIGTHDQPIRAVEYSDE----VNCILTGSW-DTSVKMWDPRSSRCVGNYTQP-DKVFT-MS  145 (327)
Q Consensus        79 ~i~vwd~~~~~------~~~~~~h~~~V~~l~~~~~----~~~l~sgs~-d~~i~lwdl~~~~~~~~~~~~-~~~~~-~~  145 (327)
                      +|++..++...      ...+..|++.|+.++|-.+    +..|++++. |.+|.+=|..++..++.+..+ +.+.+ ++
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys  191 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS  191 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE
Confidence            99997765432      2356789999999999754    356777654 788988899889888887764 34444 57


Q ss_pred             cCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeee
Q psy11885        146 LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCH  225 (327)
Q Consensus       146 ~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h  225 (327)
                      +++..+++|+.|.+||+||+|-..               |+..                    ++..-           |
T Consensus       192 wn~~m~~sgsqdktirfwdlrv~~---------------~v~~--------------------l~~~~-----------~  225 (350)
T KOG0641|consen  192 WNGAMFASGSQDKTIRFWDLRVNS---------------CVNT--------------------LDNDF-----------H  225 (350)
T ss_pred             ecCcEEEccCCCceEEEEeeeccc---------------eeee--------------------ccCcc-----------c
Confidence            889999999999999999998321               1110                    01000           0


Q ss_pred             eeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        226 RIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       226 ~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      ..   +++ -+.|.+++..|.|+.|++|-.|....+||++.++.++.+..|...|.|+.|||...||.+++.+.....+
T Consensus       226 ~~---gle-ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~iklt  300 (350)
T KOG0641|consen  226 DG---GLE-SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLT  300 (350)
T ss_pred             CC---Ccc-cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEe
Confidence            00   000 1357899999999999999999999999999999999999999999999999999999888766554443

>KOG0274|consensus

Probab=99.93  E-value=7.8e-24  Score=193.73  Aligned_cols=241  Identities=20%  Similarity=0.347  Sum_probs=181.2

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCc
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..-|.++|.+++|.. ++.+|++|+.|.++++||..+|++.. ..+|+..|.++.. ....+++||.|.+|++|+++++.
T Consensus       245 l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~-~~~~~~sgs~D~tVkVW~v~n~~  322 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI-DPFLLVSGSRDNTVKVWDVTNGA  322 (537)
T ss_pred             ccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc-cCceEeeccCCceEEEEeccCcc
Confidence            345889999999997 67899999999999999999999654 4579888877654 34567789999999999999877


Q ss_pred             ee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEEecCC-CeEEEEeCCCeEEEEECC
Q psy11885         90 ET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTMSLCG-EKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        90 ~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~d~~v~iwD~~  166 (327)
                      .. ++.+|..+|+++..+  +..+++|++|++|++||.++++|+..+..+ ..++++...+ +.+++|+.|++|++||++
T Consensus       323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~  400 (537)
T KOG0274|consen  323 CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLR  400 (537)
T ss_pred             eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCC
Confidence            65 455699999999987  689999999999999999999999999875 4577777778 899999999999999999


Q ss_pred             CC-ccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        167 NM-GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       167 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      +. +.++....+...  ..  ......+.++.++.++.+.+|.........    .+..+        +...|.++++. 
T Consensus       401 ~~~~c~~tl~~h~~~--v~--~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~----~~~~~--------~~~~v~~l~~~-  463 (537)
T KOG0274|consen  401 TKRKCIHTLQGHTSL--VS--SLLLRDNFLVSSSADGTIKLWDAEEGECLR----TLEGR--------HVGGVSALALG-  463 (537)
T ss_pred             chhhhhhhhcCCccc--cc--ccccccceeEeccccccEEEeecccCceee----eeccC--------CcccEEEeecC-
Confidence            88 543322211111  11  122334566777888877775443333221    11110        12245566654 


Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885        246 EYNTFATGGSDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd~~~~~~~~~~  273 (327)
                       ...+++++.||++++||++++.....+
T Consensus       464 -~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  464 -KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             -cceEEEEecCCeeEEEecccCchhhhh
Confidence             457889999999999999999887765

>KOG0264|consensus

Probab=99.93  E-value=5.5e-24  Score=181.13  Aligned_cols=245  Identities=18%  Similarity=0.285  Sum_probs=179.8

Q ss_pred             CceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--E---------EEEecCCCceeeEEEe--CCceE
Q psy11885          5 KTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--L---------RLKYAHSDPVLDCCFQ--DAVHS   71 (327)
Q Consensus         5 ~~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--~---------~~~~~h~~~v~~~~~~--~~~~~   71 (327)
                      +.+-.+...|+++|+.+++.|+...++|+.+..+.|.|||.....  .         ..+.+|++.-.+++|+  ...++
T Consensus       114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L  193 (422)
T KOG0264|consen  114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL  193 (422)
T ss_pred             ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence            334555678999999999999877788888889999999986422  1         1456788777778885  56689


Q ss_pred             EEEecCCcEEEEEcCCCce--------eeeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCC--CceeeeeeC-CC
Q psy11885         72 FSGGLDCTLKMFDFNTQTE--------TVIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRS--SRCVGNYTQ-PD  139 (327)
Q Consensus        72 ~sgs~Dg~i~vwd~~~~~~--------~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~--~~~~~~~~~-~~  139 (327)
                      ++|+.|++|++||++....        ..+.+|+..|..++|++- .+++.+++.|+.+.|||+|+  .++...... ..
T Consensus       194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~  273 (422)
T KOG0264|consen  194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA  273 (422)
T ss_pred             eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence            9999999999999975422        246789999999999984 46788999999999999995  333333333 33


Q ss_pred             cEEEEecC---CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccc
Q psy11885        140 KVFTMSLC---GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQ  216 (327)
Q Consensus       140 ~~~~~~~~---~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  216 (327)
                      .+.++.++   +..||+|+.|++|++||+|++....+                                           
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh-------------------------------------------  310 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH-------------------------------------------  310 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCce-------------------------------------------
Confidence            44444443   45689999999999999998642110                                           


Q ss_pred             cceeeeeeeeeccCCeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCc--------------eeeeecCcCCcceE
Q psy11885        217 KMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNK--------------KRLCQFHRYDTGIT  281 (327)
Q Consensus       217 ~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~--------------~~~~~~~~~~~~v~  281 (327)
                          .+..|.         ..|.+|.|||.. ..||+++.|+.+.|||+..-              +.+..-.+|...|.
T Consensus       311 ----~~e~H~---------dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~  377 (422)
T KOG0264|consen  311 ----TFEGHE---------DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVS  377 (422)
T ss_pred             ----eccCCC---------cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccc
Confidence                001111         136789999965 56889999999999997532              12233357888899


Q ss_pred             EEEECCCCCEEEEEEccccccCCC
Q psy11885        282 SLCFSYDGNVLAIACSYNYELETP  305 (327)
Q Consensus       282 ~l~fspdg~~la~~~~~~~~~~~~  305 (327)
                      .+.|+|.--+++.+-..+..|-.|
T Consensus       378 DfsWnp~ePW~I~SvaeDN~LqIW  401 (422)
T KOG0264|consen  378 DFSWNPNEPWTIASVAEDNILQIW  401 (422)
T ss_pred             cccCCCCCCeEEEEecCCceEEEe
Confidence            999999888777666666666554

>KOG0316|consensus

Probab=99.93  E-value=7.7e-24  Score=166.30  Aligned_cols=236  Identities=14%  Similarity=0.192  Sum_probs=178.7

Q ss_pred             eEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeC
Q psy11885         49 NLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP  126 (327)
Q Consensus        49 ~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl  126 (327)
                      ++.....++++|..+.|. ++++.++++.|.+||+|+.-.+.. +...+|...|..++.+.|+..+++++.|..+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            344455788999999996 999999999999999999876654 467789999999999999999999999999999999


Q ss_pred             CCCceeeeeeCC-CcEEEEecCC--CeEEEEeCCCeEEEEECCCCcc-ceeeecccceeeeEEeEEeeCCCceEEEeecC
Q psy11885        127 RSSRCVGNYTQP-DKVFTMSLCG--EKFVVGTAGRKVCIWDLRNMGY-IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG  202 (327)
Q Consensus       127 ~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~d~~v~iwD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (327)
                      ++|+.+..+..+ .++-++.++.  ..+++|+.|.++|+||.|.... ..+.......   ......-.+..++.++.+|
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D---~V~Si~v~~heIvaGS~DG  165 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD---GVSSIDVAEHEIVAGSVDG  165 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC---ceeEEEecccEEEeeccCC
Confidence            999999988765 3555666654  4588999999999999986532 1111111110   1112223456788999999


Q ss_pred             eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcce--
Q psy11885        203 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI--  280 (327)
Q Consensus       203 ~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v--  280 (327)
                      +.+.+..-.+...             .+.++  .||+|++|++|++....++-|+++++-|-.+|+.+..+++|...-  
T Consensus       166 tvRtydiR~G~l~-------------sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk  230 (307)
T KOG0316|consen  166 TVRTYDIRKGTLS-------------SDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK  230 (307)
T ss_pred             cEEEEEeecceee-------------hhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence            9887544333211             11112  279999999999999999999999999999999999998887642  


Q ss_pred             EEEEECCCCCEEEEEEcccccc
Q psy11885        281 TSLCFSYDGNVLAIACSYNYEL  302 (327)
Q Consensus       281 ~~l~fspdg~~la~~~~~~~~~  302 (327)
                      ..++|+.....+++|+.+++..
T Consensus       231 ldc~l~qsdthV~sgSEDG~Vy  252 (307)
T KOG0316|consen  231 LDCCLNQSDTHVFSGSEDGKVY  252 (307)
T ss_pred             eeeeecccceeEEeccCCceEE
Confidence            4458888777888887655443

>KOG1539|consensus

Probab=99.93  E-value=2.8e-23  Score=188.32  Aligned_cols=299  Identities=15%  Similarity=0.203  Sum_probs=206.0

Q ss_pred             eeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-Ee-cCCCceeeEEEe-CCceEEEEecCCcEEEE
Q psy11885          7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KY-AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus         7 ~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~-~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vw   83 (327)
                      .|++... .+.|+.++|..||...|++|+..|.+.+||++..++.. .. .|.+.|....|. ....+++++.|+.+++|
T Consensus       237 l~sFk~d-~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~  315 (910)
T KOG1539|consen  237 LMSFKQD-WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW  315 (910)
T ss_pred             EEEEEcc-ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence            4444443 58999999999888899999999999999999988643 33 688888888884 55677799999999999


Q ss_pred             EcCCCc--ee---eeecCCccEEEEEEe-CCCCEEEEEECCCeEEEEeCCC-------Cc--------e-----------
Q psy11885         84 DFNTQT--ET---VIGTHDQPIRAVEYS-DEVNCILTGSWDTSVKMWDPRS-------SR--------C-----------  131 (327)
Q Consensus        84 d~~~~~--~~---~~~~h~~~V~~l~~~-~~~~~l~sgs~d~~i~lwdl~~-------~~--------~-----------  131 (327)
                      =.+++.  +.   ...+|..|-.++.|. .+|..+++++.|++.|.+++.+       +.        .           
T Consensus       316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~  395 (910)
T KOG1539|consen  316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL  395 (910)
T ss_pred             EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence            766543  22   335899999999987 6788999999999888776521       00        0           


Q ss_pred             --e--------------------------------------eeeeC--------CCcEEEEecCCCeEEEEeCCCeEEEE
Q psy11885        132 --V--------------------------------------GNYTQ--------PDKVFTMSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus       132 --~--------------------------------------~~~~~--------~~~~~~~~~~~~~~~~~~~d~~v~iw  163 (327)
                        +                                      +.+..        .....++++||+..+.|+..|+|.+|
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f  475 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF  475 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence              0                                      00000        01234567889999999999999999


Q ss_pred             ECCCCccceee-ecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccccee-----eeeeeeecc--------
Q psy11885        164 DLRNMGYIMQR-RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY-----AFKCHRIKE--------  229 (327)
Q Consensus       164 D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~h~~~~--------  229 (327)
                      ++.++-..... .......+...+++....+.+++++.+|....|.+........+..     ..-.|+...        
T Consensus       476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd  555 (910)
T KOG1539|consen  476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD  555 (910)
T ss_pred             EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc
Confidence            99875321111 0112233345555555556677777777665544332110000000     001111110        


Q ss_pred             ---------------CCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEE
Q psy11885        230 ---------------DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAI  294 (327)
Q Consensus       230 ---------------~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~  294 (327)
                                     .=.+|...|++++|||||+.|++++-|++||+||+.++..+..+. .+.++++|.|||+|.+||+
T Consensus       556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT  634 (910)
T KOG1539|consen  556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLAT  634 (910)
T ss_pred             eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEE
Confidence                           001234469999999999999999999999999999999887764 4678999999999999999


Q ss_pred             EEccccccCCCCC
Q psy11885        295 ACSYNYELETPPD  307 (327)
Q Consensus       295 ~~~~~~~~~~~~~  307 (327)
                      +..++.-+.-|.+
T Consensus       635 ~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  635 VHVDQNGIYLWSN  647 (910)
T ss_pred             EEecCceEEEEEc
Confidence            9988766666643

>KOG0292|consensus

Probab=99.93  E-value=2.1e-23  Score=190.25  Aligned_cols=239  Identities=15%  Similarity=0.230  Sum_probs=172.9

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      ...|+++|+.+.|+|. +.++++||.|-.|+||+..+.++. .+.+|-+-|..+.|+ .-..++|+|.|.+||+|+..++
T Consensus        47 FdeHdGpVRgv~FH~~-qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr  125 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR  125 (1202)
T ss_pred             hhccCCccceeeecCC-CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence            3568999999999995 579999999999999999998864 456899999999995 7889999999999999999998


Q ss_pred             cee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc-----ee------------------------eeeeCC
Q psy11885         89 TET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR-----CV------------------------GNYTQP  138 (327)
Q Consensus        89 ~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~-----~~------------------------~~~~~~  138 (327)
                      .+. ++.+|+..|.|..|+|....++|+|-|.+||+||+..-+     +.                        +.+..+
T Consensus       126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH  205 (1202)
T KOG0292|consen  126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH  205 (1202)
T ss_pred             ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence            874 678999999999999988999999999999999974210     00                        001122


Q ss_pred             Cc---EEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccc
Q psy11885        139 DK---VFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEM  215 (327)
Q Consensus       139 ~~---~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  215 (327)
                      +.   -.++.+.-..+++|+.|+.|++|.+...+--....-..+-....++-|+|..+.++..+.+..++||.++..+..
T Consensus       206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v  285 (1202)
T KOG0292|consen  206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV  285 (1202)
T ss_pred             ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence            21   123333346799999999999999876542110000111122456778888788888888888888666554433


Q ss_pred             ccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeC
Q psy11885        216 QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       216 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~  264 (327)
                      +....       .+      ...+.++-||..+.||+|- |+-+-+|.+
T Consensus       286 ~tfrr-------en------dRFW~laahP~lNLfAAgH-DsGm~VFkl  320 (1202)
T KOG0292|consen  286 QTFRR-------EN------DRFWILAAHPELNLFAAGH-DSGMIVFKL  320 (1202)
T ss_pred             eeeec-------cC------CeEEEEEecCCcceeeeec-CCceEEEEE
Confidence            22111       11      1356788899998888774 444445544

>KOG0276|consensus

Probab=99.93  E-value=1.8e-23  Score=184.28  Aligned_cols=233  Identities=18%  Similarity=0.286  Sum_probs=177.2

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc-
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT-   89 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~-   89 (327)
                      .-+-+|++.+|-. ...++++|+.|..||||+.++++ ...+.+|.+-+.+++.+ ...+++|+|.|-+||+||-+.+= 
T Consensus        53 V~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa  131 (794)
T KOG0276|consen   53 VSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA  131 (794)
T ss_pred             ecccchhhheeee-ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee
Confidence            3445789999998 56799999999999999999987 45666899999999985 67799999999999999998763 


Q ss_pred             -eeeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc---EEEEecCC--CeEEEEeCCCeEEE
Q psy11885         90 -ETVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK---VFTMSLCG--EKFVVGTAGRKVCI  162 (327)
Q Consensus        90 -~~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~d~~v~i  162 (327)
                       ...+.+|+..|.+++|.| |.+.++|++-|++|++|.+.+..+..+++.+..   ++++-..|  ..+++|+.|.+++|
T Consensus       132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKv  211 (794)
T KOG0276|consen  132 CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKV  211 (794)
T ss_pred             eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEE
Confidence             356789999999999998 678999999999999999999888888876543   33333333  37999999999999


Q ss_pred             EECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        163 WDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       163 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                      ||..+..++.....+.  .-...+.++|.-+.+++++.+|++++|...+-.......+          +.+   .++||+
T Consensus       212 WDyQtk~CV~TLeGHt--~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~----------gle---RvW~I~  276 (794)
T KOG0276|consen  212 WDYQTKSCVQTLEGHT--NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY----------GLE---RVWCIA  276 (794)
T ss_pred             eecchHHHHHHhhccc--ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc----------CCc---eEEEEe
Confidence            9998765542221111  1235566778778888999999988865443332222222          122   477888


Q ss_pred             EecCCCeEEEecCCCeEEE
Q psy11885        243 FHQEYNTFATGGSDGYVNI  261 (327)
Q Consensus       243 ~spd~~~lasgs~dg~i~i  261 (327)
                      -.+.+..+++|.+.|.|.+
T Consensus       277 ~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  277 AHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             ecCCCCeEEEeccCCcEEE
Confidence            8888888888877776543

>KOG0275|consensus

Probab=99.93  E-value=4.2e-25  Score=180.87  Aligned_cols=236  Identities=17%  Similarity=0.298  Sum_probs=172.7

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      +-+++.|.|+.|+.+ ...||+|+.||.|++|.+.+|++...+  +|++.|+++.|+ ++.+++|+|.|.++|+--+.++
T Consensus       260 MMmd~aVlci~FSRD-sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG  338 (508)
T KOG0275|consen  260 MMMDDAVLCISFSRD-SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG  338 (508)
T ss_pred             eecccceEEEeeccc-HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence            446789999999996 479999999999999999999965444  699999999997 8899999999999999999988


Q ss_pred             ce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc------EEEEecCCCeEEEEeCCCeEE
Q psy11885         89 TE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK------VFTMSLCGEKFVVGTAGRKVC  161 (327)
Q Consensus        89 ~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~~v~  161 (327)
                      +. +.+.+|.+.|+...|.+||..+++++.||+|++|+..+.+|+.++.....      +.-+.-+++.++++...++|.
T Consensus       339 K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~  418 (508)
T KOG0275|consen  339 KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVY  418 (508)
T ss_pred             hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEE
Confidence            76 46789999999999999999999999999999999999999998875432      222233577899999999999


Q ss_pred             EEECCCCccceeeecccceee--eEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        162 IWDLRNMGYIMQRRESSLKFQ--TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       162 iwD~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      |-++...- + ..........  -.+...+|.++.+.....++....+...++...    ..+..|.         ..+-
T Consensus       419 imn~qGQv-V-rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE----~tl~VhE---------kdvI  483 (508)
T KOG0275|consen  419 IMNMQGQV-V-RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE----RTLPVHE---------KDVI  483 (508)
T ss_pred             EEeccceE-E-eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee----eeeeccc---------cccc
Confidence            99886421 1 1111111110  112223444444444433433333223222211    1112221         1355


Q ss_pred             EEEEecCCCeEEEecCCCeEEEEe
Q psy11885        240 AISFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       240 ~v~~spd~~~lasgs~dg~i~iWd  263 (327)
                      .++.||..+.||+-++||..++|.
T Consensus       484 Gl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  484 GLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccccCcccchhhhhcccchhhhcC
Confidence            688999999999999999999995

>KOG0288|consensus

Probab=99.92  E-value=2.4e-24  Score=181.20  Aligned_cols=234  Identities=18%  Similarity=0.276  Sum_probs=179.1

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEeC-CceEEEEecCCcEEEEEcCCCceeee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQD-AVHSFSGGLDCTLKMFDFNTQTETVI   93 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~~-~~~~~sgs~Dg~i~vwd~~~~~~~~~   93 (327)
                      ++|+++.|.++ ++.+++++.|+.+++|++.+.++ ..+.+|++.|+++.|.. ...+++|+.|.+||.||+.+..+...
T Consensus       220 g~it~~d~d~~-~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt  298 (459)
T KOG0288|consen  220 GNITSIDFDSD-NKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT  298 (459)
T ss_pred             CCcceeeecCC-CceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence            67999999995 67888899999999999999885 45567999999999853 33499999999999999988665322


Q ss_pred             ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEE--EecCCCeEEEEeCCCeEEEEECCCCccc
Q psy11885         94 GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFT--MSLCGEKFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      .-....+.+|+.+  ...++||..|++||.||.++..+.......+.+.+  +++++..+++++.|.++.+.|+|+.+..
T Consensus       299 ~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~  376 (459)
T KOG0288|consen  299 VLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIR  376 (459)
T ss_pred             ccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEE
Confidence            2223445556554  46799999999999999999999888887776655  4566888999999999999999987653


Q ss_pred             eeeecccc--eeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe
Q psy11885        172 MQRRESSL--KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT  249 (327)
Q Consensus       172 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~  249 (327)
                      ........  ......+.|+|++.+.++|+.+|.+.||...++......... .+          ...|++++|+|.|+.
T Consensus       377 ~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s-~s----------~~aI~s~~W~~sG~~  445 (459)
T KOG0288|consen  377 QTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS-TS----------NAAITSLSWNPSGSG  445 (459)
T ss_pred             EEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC-CC----------CcceEEEEEcCCCch
Confidence            22221111  112355678999999999999999999777665433222111 00          114899999999999


Q ss_pred             EEEecCCCeEEEEe
Q psy11885        250 FATGGSDGYVNIWD  263 (327)
Q Consensus       250 lasgs~dg~i~iWd  263 (327)
                      |++++.++.+.+|.
T Consensus       446 Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  446 LLSADKQKAVTLWT  459 (459)
T ss_pred             hhcccCCcceEecC
Confidence            99999999999993

>KOG0306|consensus

Probab=99.92  E-value=9.6e-23  Score=183.05  Aligned_cols=274  Identities=19%  Similarity=0.251  Sum_probs=211.4

Q ss_pred             CCeeEEEEecCCCc--EEEEEECCCcEEEEECCC-CeE---------EEEecCCCceeeEEEeCCceEEEEecCCcEEEE
Q psy11885         16 DGITAVKFAPNSNQ--FLLASSWDCNVSLYDITN-NNL---------RLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        16 ~~I~~i~fs~~~~~--~l~s~~~d~~i~iwd~~~-~~~---------~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vw   83 (327)
                      ..|-.+.+.|.++.  .|+. -.++++.+|.++. ++.         ....+|...|.++++++.+.++..+..+.+++|
T Consensus       321 ~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiW  399 (888)
T KOG0306|consen  321 AKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIW  399 (888)
T ss_pred             hheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEE
Confidence            46778888885432  3333 4578899998875 222         233468889999999877666655568899999


Q ss_pred             EcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-E--EEEecCCCeEEEEeCCCeE
Q psy11885         84 DFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-V--FTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        84 d~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~d~~v  160 (327)
                      +..+.++...-+ ...+.+.+|-|.++++++|...|.+.+||+.+...+.+...+.. +  ++..+++..+++|+.|.+|
T Consensus       400 n~~t~kciRTi~-~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktV  478 (888)
T KOG0306|consen  400 NRDTLKCIRTIT-CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTV  478 (888)
T ss_pred             EccCcceeEEec-cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEE
Confidence            998877654333 23788999999999999999999999999999887777665443 3  4566788899999999999


Q ss_pred             EEEECCCCc-------c---ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccC
Q psy11885        161 CIWDLRNMG-------Y---IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED  230 (327)
Q Consensus       161 ~iwD~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~  230 (327)
                      ++||..-..       .   +.+.+.-.++...-|++++|++..++++-.+.++.|+++|+-    +....+.+|.+   
T Consensus       479 kfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl----KFflsLYGHkL---  551 (888)
T KOG0306|consen  479 KFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL----KFFLSLYGHKL---  551 (888)
T ss_pred             EEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce----eeeeeeccccc---
Confidence            999975211       1   112222334556789999999999999999999999998863    34455566665   


Q ss_pred             CeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        231 GIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       231 ~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                            ||.|+..|||++.++|||.|.+|+||-+.=|..-..+.+|+..|+++.|-|+...+.+++.+++...+
T Consensus       552 ------PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW  619 (888)
T KOG0306|consen  552 ------PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW  619 (888)
T ss_pred             ------ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence                  89999999999999999999999999988787777889999999999999987777777666555554

>KOG0277|consensus

Probab=99.92  E-value=4.5e-23  Score=163.65  Aligned_cols=228  Identities=21%  Similarity=0.398  Sum_probs=164.6

Q ss_pred             eEEEEecCCCcEEEEE-E------CCCcEEEEECCCCe-E--EEEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcC
Q psy11885         19 TAVKFAPNSNQFLLAS-S------WDCNVSLYDITNNN-L--RLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~-~------~d~~i~iwd~~~~~-~--~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      .++.|||=-...||.+ +      -.|.+.|-++...+ +  ...+.-.+.+..++|+  ..+++++++.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            4789998322233322 1      25789999986433 2  3345567888999995  56788999999999999965


Q ss_pred             CCce--eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-EEEEe--cC-CCeEEEEeCCCe
Q psy11885         87 TQTE--TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-VFTMS--LC-GEKFVVGTAGRK  159 (327)
Q Consensus        87 ~~~~--~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-~~~~~--~~-~~~~~~~~~d~~  159 (327)
                      ....  ..++.|...|.++.|++ .++.++++|+|++|++||....+.++++..+.. ++...  +. ++.+++++.|++
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence            4322  34678999999999997 456788899999999999998899999887665 34433  33 678999999999


Q ss_pred             EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      +++||+|..+..+.                                                +..|.         ..+.
T Consensus       172 l~lwdvr~~gk~~~------------------------------------------------i~ah~---------~Eil  194 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMS------------------------------------------------IEAHN---------SEIL  194 (311)
T ss_pred             EEEEEecCCCceeE------------------------------------------------EEecc---------ceeE
Confidence            99999985321100                                                00111         1255


Q ss_pred             EEEEec-CCCeEEEecCCCeEEEEeCCCcee-eeecCcCCcceEEEEECCCCC-EEEEEEccccccC
Q psy11885        240 AISFHQ-EYNTFATGGSDGYVNIWDGFNKKR-LCQFHRYDTGITSLCFSYDGN-VLAIACSYNYELE  303 (327)
Q Consensus       240 ~v~~sp-d~~~lasgs~dg~i~iWd~~~~~~-~~~~~~~~~~v~~l~fspdg~-~la~~~~~~~~~~  303 (327)
                      |+.|+. +...|+||+.|+.||+||+++.+. +..+.+|.-.|..++|||... +||+++.+.....
T Consensus       195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ri  261 (311)
T KOG0277|consen  195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRI  261 (311)
T ss_pred             eecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEe
Confidence            677765 456789999999999999988654 556788888999999999755 5555544433333

>KOG0289|consensus

Probab=99.92  E-value=1.8e-22  Score=171.07  Aligned_cols=273  Identities=19%  Similarity=0.206  Sum_probs=210.4

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      +.....+|+++...|. ...+++||.|.++.++|...+++ ..+.+|+..|+.+.|+ +...+++++.|..|++|.....
T Consensus       215 H~t~~pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  215 HSTSTPGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS  293 (506)
T ss_pred             eccCCCCeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence            3444568899988885 46899999999999999999985 4555899999999996 6678889999999999998755


Q ss_pred             ce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-----CcEEEEecCCCeEEEEeCCCeEEE
Q psy11885         89 TE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-----DKVFTMSLCGEKFVVGTAGRKVCI  162 (327)
Q Consensus        89 ~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~v~i  162 (327)
                      .. .....|+.+|+.+..+|.|.+|++++.|++.-..|.+++.++......     -....++++|..|.+|+.|+.|+|
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki  373 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI  373 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence            43 456789999999999999999999999999999999999887665543     123457788889999999999999


Q ss_pred             EECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        163 WDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       163 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                      ||+.++..+-...  .+..+...++|..++..+++++.++.+.+  ||.+.......+.+          ....+++++.
T Consensus       374 wdlks~~~~a~Fp--ght~~vk~i~FsENGY~Lat~add~~V~l--wDLRKl~n~kt~~l----------~~~~~v~s~~  439 (506)
T KOG0289|consen  374 WDLKSQTNVAKFP--GHTGPVKAISFSENGYWLATAADDGSVKL--WDLRKLKNFKTIQL----------DEKKEVNSLS  439 (506)
T ss_pred             EEcCCccccccCC--CCCCceeEEEeccCceEEEEEecCCeEEE--EEehhhcccceeec----------cccccceeEE
Confidence            9999876332222  23345688889888877777777776544  66554322111111          1112589999


Q ss_pred             EecCCCeEEEecCCCeEEEEeCCCc--eeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        243 FHQEYNTFATGGSDGYVNIWDGFNK--KRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       243 ~spd~~~lasgs~dg~i~iWd~~~~--~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      |.+.|++|+.++.|=.|++++-.+.  ..+..+..|.+..+.+.|..+.++|++++.+
T Consensus       440 fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd  497 (506)
T KOG0289|consen  440 FDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMD  497 (506)
T ss_pred             EcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccch
Confidence            9999999999988877777763332  3455666777778999999999999999754

>KOG0772|consensus

Probab=99.91  E-value=2e-23  Score=180.31  Aligned_cols=235  Identities=19%  Similarity=0.231  Sum_probs=164.2

Q ss_pred             EecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCcee------eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEe
Q psy11885         53 KYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTET------VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD  125 (327)
Q Consensus        53 ~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~------~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwd  125 (327)
                      +.+|+..|..+++ +.|..++|||.|.+|++||++.....      +......+|+++.|++.|..|+..+.....+|+|
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D  242 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD  242 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence            3456778899998 78999999999999999999865321      2234456899999999999999888888999999


Q ss_pred             CCCCceeeeee-C----------CCc---E--EEEecC-CCeEEEEeCCCeEEEEECCCCcccee----eecccceeeeE
Q psy11885        126 PRSSRCVGNYT-Q----------PDK---V--FTMSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQ----RRESSLKFQTR  184 (327)
Q Consensus       126 l~~~~~~~~~~-~----------~~~---~--~~~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~----~~~~~~~~~~~  184 (327)
                      -. |..+.++. .          .+.   +  .++.+. .+.|++++.|+++||||+.+.+...+    .........+.
T Consensus       243 Rd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t  321 (641)
T KOG0772|consen  243 RD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT  321 (641)
T ss_pred             cC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence            54 43332221 1          111   1  223332 45699999999999999987653222    12223344455


Q ss_pred             EeEEeeCCCceEEEeecCeEEEEEccCCcccccceeee-eeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEe
Q psy11885        185 CIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF-KCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd  263 (327)
                      ..++++++..+++++.+|.+.+  |+.+.......+-+ ..|.-.       ..|.||+||+||++|+|-|.|+++++||
T Consensus       322 sC~~nrdg~~iAagc~DGSIQ~--W~~~~~~v~p~~~vk~AH~~g-------~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  322 SCAWNRDGKLIAAGCLDGSIQI--WDKGSRTVRPVMKVKDAHLPG-------QDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             eeecCCCcchhhhcccCCceee--eecCCcccccceEeeeccCCC-------CceeEEEeccccchhhhccCCCceeeee
Confidence            6678899999999999998777  44333222222111 222211       2589999999999999999999999999


Q ss_pred             CCCcee-eeecCcCC--cceEEEEECCCCCEEEEEEc
Q psy11885        264 GFNKKR-LCQFHRYD--TGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       264 ~~~~~~-~~~~~~~~--~~v~~l~fspdg~~la~~~~  297 (327)
                      +++.+. +....+..  .+-+.++||||.++|++|.+
T Consensus       393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             ccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence            987654 33322222  24578999999999999976

>KOG2055|consensus

Probab=99.91  E-value=2e-22  Score=171.91  Aligned_cols=278  Identities=16%  Similarity=0.215  Sum_probs=199.2

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe---EEEEecCCCceeeEEEe-CCc-eEEEEecCCcEEEEEc
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN---LRLKYAHSDPVLDCCFQ-DAV-HSFSGGLDCTLKMFDF   85 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~h~~~v~~~~~~-~~~-~~~sgs~Dg~i~vwd~   85 (327)
                      .++-.++|+++.|+| ...+|+++|.|++++||.+....   +....--..|+.+++|. +|. .++++|.......||+
T Consensus       209 ~~ps~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  209 AHPSHGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             CCcCcCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence            456668999999999 46899999999999999997543   22222345688888994 666 7889999999999999


Q ss_pred             CCCcee---eeecCC-ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEE--EEecCCCeEEEEeCCCe
Q psy11885         86 NTQTET---VIGTHD-QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVF--TMSLCGEKFVVGTAGRK  159 (327)
Q Consensus        86 ~~~~~~---~~~~h~-~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~  159 (327)
                      .+.+..   ...++. ..+..+..++++++|+..+..|-|.+.-..+++.+..+..++.+.  .++.++..+++++.+|.
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~Ge  367 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGE  367 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCce
Confidence            887643   233443 457788999999999999999999999999999999988877664  45556888999999999


Q ss_pred             EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      |.+||+++...+ ++...+-......++.+.++..+++|+..|.+.|+..+..-.....+-. +    .-+.  -...|+
T Consensus       368 V~v~nl~~~~~~-~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPi-k----~~dN--Ltt~It  439 (514)
T KOG2055|consen  368 VYVWNLRQNSCL-HRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPI-K----TVDN--LTTAIT  439 (514)
T ss_pred             EEEEecCCcceE-EEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCch-h----hhhh--hheeee
Confidence            999999987533 3332222233455666677788888888888777543321110000000 0    0001  123689


Q ss_pred             EEEEecCCCeEEEecC--CCeEEEEeCCCceeeeecCcC---CcceEEEEECCCCCEEEEEEc
Q psy11885        240 AISFHQEYNTFATGGS--DGYVNIWDGFNKKRLCQFHRY---DTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       240 ~v~~spd~~~lasgs~--dg~i~iWd~~~~~~~~~~~~~---~~~v~~l~fspdg~~la~~~~  297 (327)
                      ++.|+||.++||-+|.  +..+|+=-+.+-.....+...   -..|+||+|||.|.+||.|-.
T Consensus       440 sl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe  502 (514)
T KOG2055|consen  440 SLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE  502 (514)
T ss_pred             eeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence            9999999999987775  467777665554433333322   235899999999999999963

>KOG0310|consensus

Probab=99.91  E-value=4.6e-23  Score=176.91  Aligned_cols=224  Identities=21%  Similarity=0.342  Sum_probs=168.8

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCce-ee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTE-TV   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~-~~   92 (327)
                      +.|++++|+|..+.-+|+++ .-.++||+..+.+... +..+++.|.+++| ++|..+++|...|.|+++|+.+... ..
T Consensus        27 ~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~  105 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ  105 (487)
T ss_pred             CcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence            78999999997654444444 4579999998877544 4457788999999 7999999999999999999655322 35


Q ss_pred             eecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeeeeCCC---cEEEEecC-CCeEEEEeCCCeEEEEECCC
Q psy11885         93 IGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNYTQPD---KVFTMSLC-GEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~d~~v~iwD~~~  167 (327)
                      +..|+.+|..+.|+|++ ..+++|+.|+.+++||+.++.....+..+.   .+.++.+- +..+++|+.||+||+||+|.
T Consensus       106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~  185 (487)
T KOG0310|consen  106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS  185 (487)
T ss_pred             HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence            67899999999999865 456678889999999999887643555433   23344443 44789999999999999985


Q ss_pred             CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885        168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY  247 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~  247 (327)
                      ...             ....                     ++              |         -.||..+.+-|.|
T Consensus       186 ~~~-------------~v~e---------------------ln--------------h---------g~pVe~vl~lpsg  208 (487)
T KOG0310|consen  186 LTS-------------RVVE---------------------LN--------------H---------GCPVESVLALPSG  208 (487)
T ss_pred             CCc-------------eeEE---------------------ec--------------C---------CCceeeEEEcCCC
Confidence            210             0000                     00              1         1267888999999


Q ss_pred             CeEEEecCCCeEEEEeCCCcee-eeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        248 NTFATGGSDGYVNIWDGFNKKR-LCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       248 ~~lasgs~dg~i~iWd~~~~~~-~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      +.+|+++ +..|++||+.+|.. +.....|.+.|+||++..++..|.+|+-+
T Consensus       209 s~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD  259 (487)
T KOG0310|consen  209 SLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD  259 (487)
T ss_pred             CEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc
Confidence            9999986 57899999986655 44455599999999999999999999764

>KOG0640|consensus

Probab=99.91  E-value=1.5e-23  Score=170.76  Aligned_cols=239  Identities=21%  Similarity=0.324  Sum_probs=178.3

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE---EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR---LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      |.++|+++.|+| ...+|++|+.|++|+++|...-...   ..+.-..+|.++.|+ .|..++.|..-.++|+||+++-+
T Consensus       171 H~devn~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q  249 (430)
T KOG0640|consen  171 HVDEVNDLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ  249 (430)
T ss_pred             ccCcccceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence            668999999999 4689999999999999999764422   122334689999995 78888899888999999999876


Q ss_pred             eee----eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-C--cE--EEEecCCCeEEEEeCCCeE
Q psy11885         90 ETV----IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-D--KV--FTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        90 ~~~----~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~--~~--~~~~~~~~~~~~~~~d~~v  160 (327)
                      +-.    -..|++.|+++.|++.++..++|+.||.|++||--+++|+.++... +  .+  ..+.-+++++++.+.|..|
T Consensus       250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v  329 (430)
T KOG0640|consen  250 CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV  329 (430)
T ss_pred             EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence            532    2468999999999999999999999999999999999999887642 2  22  2345578899999999999


Q ss_pred             EEEECCCCccceeeecccc--eeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        161 CIWDLRNMGYIMQRRESSL--KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      ++|++.++..+..-.....  ....+.-+.+.....+++...+....+..||.....+.....          ++|..++
T Consensus       330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s----------lgHn~a~  399 (430)
T KOG0640|consen  330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS----------LGHNGAV  399 (430)
T ss_pred             eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc----------cCCCCCc
Confidence            9999988765422111100  000112223344455666666666667778876654433222          2344578


Q ss_pred             eEEEEecCCCeEEEecCCCeEEEEe
Q psy11885        239 NAISFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~dg~i~iWd  263 (327)
                      .++..||....|+++|.|..+|+|-
T Consensus       400 R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  400 RWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             eEEEeCCCCCceeeecccceeeeee
Confidence            9999999999999999999999995

>KOG1332|consensus

Probab=99.91  E-value=2.6e-23  Score=164.10  Aligned_cols=238  Identities=18%  Similarity=0.226  Sum_probs=168.4

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----EEEEecCCCceeeEEE-e--CCceEEEEecCCcEEEE
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LRLKYAHSDPVLDCCF-Q--DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~h~~~v~~~~~-~--~~~~~~sgs~Dg~i~vw   83 (327)
                      ...|++-|..+...=- ++.|||++.|++|+|+.+.++.    +..+.+|.+||..++| +  -|..|+|++.||.|.+|
T Consensus         7 dt~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            3456777777766653 4789999999999999997643    2345589999999999 3  58899999999999999


Q ss_pred             EcCCCce---eeeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCC-ce-eeee----eCCCcEEEEecC---C-
Q psy11885         84 DFNTQTE---TVIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSS-RC-VGNY----TQPDKVFTMSLC---G-  148 (327)
Q Consensus        84 d~~~~~~---~~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~-~~-~~~~----~~~~~~~~~~~~---~-  148 (327)
                      .-+.++-   .....|+..|++++|.|.  |-.|+.++.||+|.+.+.+.. .. ...+    .......++.+.   | 
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~  165 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS  165 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence            8777642   235579999999999885  567889999999999987654 21 1111    111222333332   2 


Q ss_pred             ----------CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccc
Q psy11885        149 ----------EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM  218 (327)
Q Consensus       149 ----------~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  218 (327)
                                .+|++|+.|+.|+||+..+..-.+.                                       .     
T Consensus       166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e---------------------------------------~-----  201 (299)
T KOG1332|consen  166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE---------------------------------------R-----  201 (299)
T ss_pred             ccccCcccccceeeccCCccceeeeecCCcchhhh---------------------------------------h-----
Confidence                      4699999999999998765321000                                       0     


Q ss_pred             eeeeeeeeeccCCeeeEEEeeEEEEecCC----CeEEEecCCCeEEEEeCCCcee---eeecCcCCcceEEEEECCCCCE
Q psy11885        219 KYAFKCHRIKEDGIEKIYPVNAISFHQEY----NTFATGGSDGYVNIWDGFNKKR---LCQFHRYDTGITSLCFSYDGNV  291 (327)
Q Consensus       219 ~~~~~~h~~~~~~~~~~~~v~~v~~spd~----~~lasgs~dg~i~iWd~~~~~~---~~~~~~~~~~v~~l~fspdg~~  291 (327)
                        .+..|         ...|..++|.|.-    .+||++|+||+|.||....-..   ...++.+...++.+.||+.|+.
T Consensus       202 --~l~~H---------~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~  270 (299)
T KOG1332|consen  202 --TLEGH---------KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNI  270 (299)
T ss_pred             --hhhhc---------chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccE
Confidence              00111         1246667777753    5799999999999997652211   1224456678999999999999


Q ss_pred             EEEEEccccccCC
Q psy11885        292 LAIACSYNYELET  304 (327)
Q Consensus       292 la~~~~~~~~~~~  304 (327)
                      ||.+++++....+
T Consensus       271 LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  271 LAVSGGDNKVTLW  283 (299)
T ss_pred             EEEecCCcEEEEE
Confidence            9999987765554

>KOG0283|consensus

Probab=99.91  E-value=7.2e-23  Score=186.28  Aligned_cols=197  Identities=21%  Similarity=0.348  Sum_probs=155.1

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|..|+||.  +.+|+++|+|.+||||++...++...+.|.+-|+|++|+  +..+++|||.|+.+|+|++...+
T Consensus       366 ~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~  443 (712)
T KOG0283|consen  366 KGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK  443 (712)
T ss_pred             hccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence            45788999999998  369999999999999999999999999999999999994  78899999999999999997765


Q ss_pred             eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee---------CCCcEEEEecC---CCeEEEEeCC
Q psy11885         90 ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT---------QPDKVFTMSLC---GEKFVVGTAG  157 (327)
Q Consensus        90 ~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~---------~~~~~~~~~~~---~~~~~~~~~d  157 (327)
                      ...-..-..-|++++|.|||+..+.|+.+|..++|+.+..+......         .+..++.+.+.   .+.+++.+.|
T Consensus       444 Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD  523 (712)
T KOG0283|consen  444 VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND  523 (712)
T ss_pred             eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCC
Confidence            54333334679999999999999999999999999998877654432         12246666553   4568889999


Q ss_pred             CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885        158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP  237 (327)
Q Consensus       158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  237 (327)
                      ..|||+|.+..+.++....            +.+                   .                        ..
T Consensus       524 SrIRI~d~~~~~lv~KfKG------------~~n-------------------~------------------------~S  548 (712)
T KOG0283|consen  524 SRIRIYDGRDKDLVHKFKG------------FRN-------------------T------------------------SS  548 (712)
T ss_pred             CceEEEeccchhhhhhhcc------------ccc-------------------C------------------------Cc
Confidence            9999999976543211000            000                   0                        00


Q ss_pred             eeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885        238 VNAISFHQEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       238 v~~v~~spd~~~lasgs~dg~i~iWd~~  265 (327)
                      -..-.|+.||++|++|++|..|+||+..
T Consensus       549 Q~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  549 QISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             ceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            1134788899999999999999999964

>KOG0305|consensus

Probab=99.91  E-value=3.5e-22  Score=177.10  Aligned_cols=267  Identities=15%  Similarity=0.217  Sum_probs=198.8

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-CCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee-eeec
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET-VIGT   95 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~   95 (327)
                      +-+.|+. . ..||+ +.+..|++|+..+++...... +...|+++.|+ ++.+|+.|-.+|.|.+||....+.. .+..
T Consensus       181 nlldWss-~-n~laV-alg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~  257 (484)
T KOG0305|consen  181 NLLDWSS-A-NVLAV-ALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG  257 (484)
T ss_pred             hHhhccc-C-CeEEE-EecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence            4566775 2 34444 457789999999998554443 37889999995 8999999999999999998876543 3445


Q ss_pred             -CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee-eeCCC---cEEEEecCCCeEEEEeCCCeEEEEECCCCcc
Q psy11885         96 -HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN-YTQPD---KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGY  170 (327)
Q Consensus        96 -h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~  170 (327)
                       |...|.+++|.  +..+.+|+.|+.|..+|++..+.... +..+.   ....++.++.++++|+.|+.+.|||......
T Consensus       258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP  335 (484)
T ss_pred             CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence             89999999998  57799999999999999998775544 33332   3356777899999999999999999965543


Q ss_pred             ceeeecccceeeeEEeEEeeCCCce-EEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe
Q psy11885        171 IMQRRESSLKFQTRCIKCFPNKQGY-VLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT  249 (327)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~  249 (327)
                      ....  ..+......+++.|...++ ++|....+.++.+|+..... .+..           ...-+.|..+.|+|..+-
T Consensus       336 ~~~~--~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~-~i~~-----------vdtgsQVcsL~Wsk~~kE  401 (484)
T KOG0305|consen  336 KFTF--TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA-RIDS-----------VDTGSQVCSLIWSKKYKE  401 (484)
T ss_pred             cEEE--eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-Eecc-----------cccCCceeeEEEcCCCCE
Confidence            3222  2233445778888866554 45555566677777754321 1111           111135889999999987


Q ss_pred             EEEe--cCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        250 FATG--GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       250 lasg--s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      |+++  -.++.|.||+..+.+++..+.+|..+|..+++||||..+++|+.++...-+
T Consensus       402 i~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw  458 (484)
T KOG0305|consen  402 LLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFW  458 (484)
T ss_pred             EEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEec
Confidence            7754  345789999999999999999999999999999999999999987654443

>KOG1274|consensus

Probab=99.91  E-value=1.3e-21  Score=179.41  Aligned_cols=283  Identities=16%  Similarity=0.234  Sum_probs=203.2

Q ss_pred             ecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC-eEEEEec-CCCceeeEEEeCCceEEEEecCCcEEEEEcC
Q psy11885          9 SLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-NLRLKYA-HSDPVLDCCFQDAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus         9 ~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      +..-.|..+-+.|+|.|+ +.++++++.||.|++|+.... +...... ++..|.+++- ...++++|+.+++|.++.+.
T Consensus         7 klRyaht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~-~s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen    7 KLRYAHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC-YSNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             cchhhccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee-cccceEEeeccceEEEeeCC
Confidence            334567789999999995 579999999999999998765 3222233 6667766654 34589999999999999998


Q ss_pred             CCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee---CCCcEEEEecCCCeEEEEeCCCeEEE
Q psy11885         87 TQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT---QPDKVFTMSLCGEKFVVGTAGRKVCI  162 (327)
Q Consensus        87 ~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~i  162 (327)
                      ++... .+..-+-++++++|+.+|++++.||.|-.|++-++........+.   .+...+.+.+.++.+|+.+.||.|++
T Consensus        85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i  164 (933)
T KOG1274|consen   85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI  164 (933)
T ss_pred             CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence            87764 555667899999999999999999999999999987765444443   34445566777889999999999999


Q ss_pred             EECCCCccceeee------cccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        163 WDLRNMGYIMQRR------ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       163 wD~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      ||+.++.......      ...........+++|++..+++.+.++.+.++.-+.-..    .+.+...       .+-.
T Consensus       165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~----~f~Lr~~-------~~ss  233 (933)
T KOG1274|consen  165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL----QFKLRDK-------LSSS  233 (933)
T ss_pred             EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee----heeeccc-------cccc
Confidence            9998764321110      001112234568899988888888888887754332111    1111110       0111


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCCCCC
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPI  309 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~  309 (327)
                      .+.+++|+|.|+|||+++-||.|-|||..+-++    +.....|.+++|-|++..|-.- .....++-+|+.+
T Consensus       234 ~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~-~~~g~~~~~~~iv  301 (933)
T KOG1274|consen  234 KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLI-TALGTLGVSPAIV  301 (933)
T ss_pred             ceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEE-eeccccccChhhc
Confidence            378899999999999999999999999987322    3344579999999998877433 4445555544433

>KOG0772|consensus

Probab=99.91  E-value=1.6e-22  Score=174.73  Aligned_cols=279  Identities=13%  Similarity=0.156  Sum_probs=198.4

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE--EE---Ee-cCCCceeeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--RL---KY-AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~--~~---~~-~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~   85 (327)
                      +|..-|.++++.|. +..+++||.|.+|++||+.....  ..   +. .....|+++.|+ .+.+++..+....++++|-
T Consensus       165 hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR  243 (641)
T KOG0772|consen  165 HGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR  243 (641)
T ss_pred             CCceEEEEeeecCC-CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence            35568999999995 67899999999999999976442  11   11 233468899996 6777877777888999997


Q ss_pred             CCCce-------------eeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCce-eeeee---C-C--CcEE--
Q psy11885         86 NTQTE-------------TVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRC-VGNYT---Q-P--DKVF--  142 (327)
Q Consensus        86 ~~~~~-------------~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~-~~~~~---~-~--~~~~--  142 (327)
                      +.-..             ....+|...+++.+|+|+. +.++|++.|+++|+||+...+. .+.+.   . .  ..+.  
T Consensus       244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC  323 (641)
T KOG0772|consen  244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC  323 (641)
T ss_pred             CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee
Confidence            64321             1235798999999999975 6799999999999999976542 22222   1 1  1223  


Q ss_pred             EEecCCCeEEEEeCCCeEEEEECCCCc--cceeeecccc-eeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccce
Q psy11885        143 TMSLCGEKFVVGTAGRKVCIWDLRNMG--YIMQRRESSL-KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK  219 (327)
Q Consensus       143 ~~~~~~~~~~~~~~d~~v~iwD~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  219 (327)
                      .+++++..||+|..||+|.+||.++.-  ..+..+.... ...+.|+.|+++++.++.-+.++...+|.+......... 
T Consensus       324 ~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~-  402 (641)
T KOG0772|consen  324 AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV-  402 (641)
T ss_pred             ecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh-
Confidence            345568889999999999999986542  1222222222 224689999999988888888888777554322211000 


Q ss_pred             eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEE
Q psy11885        220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA  293 (327)
Q Consensus       220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la  293 (327)
                               -.++...++-+.++|||+.++|++|..      -|++.+||..+...++++.-....|..+.|+|.=+.|.
T Consensus       403 ---------~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~  473 (641)
T KOG0772|consen  403 ---------RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF  473 (641)
T ss_pred             ---------hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence                     012333456677899999999999853      46899999988888888765567789999999988888


Q ss_pred             EEEcccccc
Q psy11885        294 IACSYNYEL  302 (327)
Q Consensus       294 ~~~~~~~~~  302 (327)
                      +|++++...
T Consensus       474 ~gsgdG~~~  482 (641)
T KOG0772|consen  474 AGSGDGTAH  482 (641)
T ss_pred             eecCCCceE
Confidence            888775543

>KOG0641|consensus

Probab=99.91  E-value=2.4e-21  Score=151.54  Aligned_cols=248  Identities=17%  Similarity=0.255  Sum_probs=180.1

Q ss_pred             CceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE------EEEecCCCceeeEEEe-----CCceEEE
Q psy11885          5 KTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL------RLKYAHSDPVLDCCFQ-----DAVHSFS   73 (327)
Q Consensus         5 ~~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~h~~~v~~~~~~-----~~~~~~s   73 (327)
                      ...++-+.+|++.|.|.+|+|. ++++++|+.|.+|++--.+....      ..+-.|.+.|..++|-     .+..++|
T Consensus        79 ~v~~kr~khhkgsiyc~~ws~~-geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s  157 (350)
T KOG0641|consen   79 SVLCKRNKHHKGSIYCTAWSPC-GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS  157 (350)
T ss_pred             eEEeeeccccCccEEEEEecCc-cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence            3456667889999999999995 68999999999999987654332      2234589999999993     3445666


Q ss_pred             Ee-cCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC----------CcE
Q psy11885         74 GG-LDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP----------DKV  141 (327)
Q Consensus        74 gs-~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~----------~~~  141 (327)
                      ++ .|..|.+-|-..++. ..+.+|++-|.++ |+=++-.+++|+.|.+||.||++-..|+.++...          ...
T Consensus       158 ~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa  236 (350)
T KOG0641|consen  158 AGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA  236 (350)
T ss_pred             cCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence            54 255555556555543 4577899999887 3445678999999999999999988888765421          123


Q ss_pred             EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceee
Q psy11885        142 FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA  221 (327)
Q Consensus       142 ~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  221 (327)
                      .++.+.|..+++|-.|.+..+||+|.+..+..  -.......+|++|+|....+++++.+..+.+..+...-..+.....
T Consensus       237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~--f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~v  314 (350)
T KOG0641|consen  237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQR--FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMV  314 (350)
T ss_pred             EEECCCcceeeeccCCCceEEEEeeCCceeee--eCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEE
Confidence            56678899999999999999999998765433  2334445799999999999999999888877554322111111112


Q ss_pred             eeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885        222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       222 ~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~  265 (327)
                      ...|.-         .+-.+.|||..--|++.|.|.++.+|-+.
T Consensus       315 v~ehkd---------k~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  315 VAEHKD---------KAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEeccC---------ceEEEEecCccceeeeccCcceEEEeccC
Confidence            222221         24467999999899999999999999753

>KOG0640|consensus

Probab=99.91  E-value=2e-22  Score=164.31  Aligned_cols=281  Identities=16%  Similarity=0.248  Sum_probs=188.6

Q ss_pred             ecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECC------------CC---e----EEEEecCCCceeeEEEe-CC
Q psy11885          9 SLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDIT------------NN---N----LRLKYAHSDPVLDCCFQ-DA   68 (327)
Q Consensus         9 ~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~------------~~---~----~~~~~~h~~~v~~~~~~-~~   68 (327)
                      .--+.|++..++.+|+|+ +.++|+||.|-.|+|.|++            .+   +    ++.++.|.+.|+++.|+ ..
T Consensus       106 ~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             EEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            334678899999999995 6899999999999999986            11   1    34567899999999996 55


Q ss_pred             ceEEEEecCCcEEEEEcCCCcee----eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee----CCCc
Q psy11885         69 VHSFSGGLDCTLKMFDFNTQTET----VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT----QPDK  140 (327)
Q Consensus        69 ~~~~sgs~Dg~i~vwd~~~~~~~----~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~----~~~~  140 (327)
                      ..++||+.|++|++||+.+...+    .+ ....+|+++.|+|.|.+|+.|..-.++|+||+++.+|.-...    +.+.
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a  263 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA  263 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence            67789999999999999764322    22 234689999999999999999999999999999988865432    1122


Q ss_pred             EE--EEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccc
Q psy11885        141 VF--TMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM  218 (327)
Q Consensus       141 ~~--~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  218 (327)
                      +.  -++..+...++++.||.|++||--..+.+.......-........|..+++.++.++.+..+.+|-+.++...   
T Consensus       264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l---  340 (430)
T KOG0640|consen  264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML---  340 (430)
T ss_pred             eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE---
Confidence            33  3456688899999999999999765554432222222223344555566655555555555555443333221   


Q ss_pred             eeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec-CCCeEEEEeCCCceeeeec-CcCCcceEEEEECCCCCEEEEEE
Q psy11885        219 KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIWDGFNKKRLCQF-HRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       219 ~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs-~dg~i~iWd~~~~~~~~~~-~~~~~~v~~l~fspdg~~la~~~  296 (327)
                       ..+.+....  +.+. . -....|+-...++..-. ..+.+.-||.++..++..+ .+|.+++..+.-||.+..+.+++
T Consensus       341 -~~YtGAg~t--grq~-~-rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcs  415 (430)
T KOG0640|consen  341 -KEYTGAGTT--GRQK-H-RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCS  415 (430)
T ss_pred             -EEEecCCcc--cchh-h-hhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeec
Confidence             111111000  0000 0 01123333333444333 3467889999988766554 47888999999999999998775


Q ss_pred             ccc
Q psy11885        297 SYN  299 (327)
Q Consensus       297 ~~~  299 (327)
                      .+-
T Consensus       416 dD~  418 (430)
T KOG0640|consen  416 DDF  418 (430)
T ss_pred             ccc
Confidence            543

>KOG0646|consensus

Probab=99.91  E-value=1.3e-22  Score=173.36  Aligned_cols=240  Identities=16%  Similarity=0.221  Sum_probs=178.5

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC-----
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ-----   88 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~-----   88 (327)
                      +.|.|++-+|. +.||+.|+..+.|++|.+.+|.+.. ..+|-.+|+++.|+ ++.+++|||.||.|.+|++..-     
T Consensus        82 g~v~al~s~n~-G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   82 GPVHALASSNL-GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             cceeeeecCCC-ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            57999999994 6788888899999999999999654 44798999999997 7899999999999999986421     


Q ss_pred             -----ceeeeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEEEEeCCCe
Q psy11885         89 -----TETVIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFVVGTAGRK  159 (327)
Q Consensus        89 -----~~~~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~  159 (327)
                           ....+..|+-+|+++...+-  ..+++|+|.|.++++||+..+..+.++..+..+  ..+++....+++|+.+|.
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~  240 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK  240 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence                 12345689999999987654  468999999999999999999988877766554  455666788999999999


Q ss_pred             EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      |.+.++-+....    ...+..  +  .++.                        .......+.+|...       .+|+
T Consensus       241 I~~~~~~~~~~~----~~~v~~--k--~~~~------------------------~~t~~~~~~Gh~~~-------~~IT  281 (476)
T KOG0646|consen  241 IFQNLLFKLSGQ----SAGVNQ--K--GRHE------------------------ENTQINVLVGHENE-------SAIT  281 (476)
T ss_pred             EEeeehhcCCcc----cccccc--c--cccc------------------------ccceeeeeccccCC-------ccee
Confidence            999887543210    000000  0  0000                        00011112223221       2699


Q ss_pred             EEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEE
Q psy11885        240 AISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       240 ~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~  295 (327)
                      |++.+.||..|++|+.||.|.|||..+.+.++++....++|+.+.+.|--+....+
T Consensus       282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~  337 (476)
T KOG0646|consen  282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILF  337 (476)
T ss_pred             EEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecc
Confidence            99999999999999999999999999988887776456789999997764444433

>KOG2096|consensus

Probab=99.91  E-value=1.1e-21  Score=160.41  Aligned_cols=278  Identities=17%  Similarity=0.181  Sum_probs=189.3

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE------EEEecCCCceeeEEEeCC--ceEEEEecCCcEEEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL------RLKYAHSDPVLDCCFQDA--VHSFSGGLDCTLKMF   83 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~h~~~v~~~~~~~~--~~~~sgs~Dg~i~vw   83 (327)
                      ..|.++|++++|+.+ +++|++++.|++|+||++..-..      +...+. +..+.++|.+.  ..+++.-...++++|
T Consensus        83 KgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~-dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY-DHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhccccC-CCceEEEECCCcceEEEEEccCCEEEEE
Confidence            457889999999995 68999999999999999875321      111111 13345677532  345566667789999


Q ss_pred             EcCCCce-------------eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC---CCcEEEEecC
Q psy11885         84 DFNTQTE-------------TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ---PDKVFTMSLC  147 (327)
Q Consensus        84 d~~~~~~-------------~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~---~~~~~~~~~~  147 (327)
                      .+.....             .+...|...|..+.....+.+|+|++.|.+|.+|+++ |+.++.+..   ...-..++|+
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~  239 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD  239 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence            7754321             0122466677788888889999999999999999998 777776643   2334568999


Q ss_pred             CCeEEEEeCCCeEEEEECCC---Cc--cceee-ecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceee
Q psy11885        148 GEKFVVGTAGRKVCIWDLRN---MG--YIMQR-RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA  221 (327)
Q Consensus       148 ~~~~~~~~~d~~v~iwD~~~---~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  221 (327)
                      |..+++++-.-.|++|++-=   +.  .+... ....+.......+|+++....++.+.+|...+|..+..-...+-...
T Consensus       240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~  319 (420)
T KOG2096|consen  240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKI  319 (420)
T ss_pred             CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchH
Confidence            99999999888999998731   11  01000 01112223456678888888999999999999776543221111000


Q ss_pred             eee--eeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC-cCCcceEEEEECCCCCEEEEEEc
Q psy11885        222 FKC--HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       222 ~~~--h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~-~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      ++.  -.....+.+   |+ .++++|.|+.||.+ ...+++++..++++....+. .|+..|.+++|+|||+++|+.+.
T Consensus       320 Lk~g~~pl~aag~~---p~-RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  320 LKEGSAPLHAAGSE---PV-RLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD  393 (420)
T ss_pred             hhcCCcchhhcCCC---ce-EEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence            100  000011111   33 68999999999866 45779999999988776664 46778999999999999998764

>KOG2106|consensus

Probab=99.91  E-value=3.8e-21  Score=165.88  Aligned_cols=265  Identities=17%  Similarity=0.214  Sum_probs=185.7

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCc--eee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT--ETV   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~--~~~   92 (327)
                      .-|.|+.|.++++  +++|..+|+|.||+..+.+. .....|++.|.+++......++||+.|..|..||-+-++  +..
T Consensus       247 k~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~e  324 (626)
T KOG2106|consen  247 KFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETE  324 (626)
T ss_pred             eEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecccccccccccc
Confidence            7899999999654  89999999999999987774 344489999999999877788899999999999944332  234


Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEEEEeCCCeEEEEECCCCcc
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGY  170 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~  170 (327)
                      ++..-++|+.++=..  .-|+.|...+.|.-=.++.+-.+-.+-+....  ++..++.+.+++++.|+.+++|+-  .+.
T Consensus       325 lPe~~G~iRtv~e~~--~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--~k~  400 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGK--GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--HKL  400 (626)
T ss_pred             CchhcCCeeEEecCC--CcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC--Cce
Confidence            555667888886432  23888888887765555544333222222233  345566788999999999999992  121


Q ss_pred             ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeE
Q psy11885        171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF  250 (327)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~l  250 (327)
                      . .  ......+..|..|+|.+ .+++++..|.-.+...+...    ..   ..|..       ..++++++|+|+|.+|
T Consensus       401 ~-w--t~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~----lv---~~~~d-------~~~ls~v~ysp~G~~l  462 (626)
T KOG2106|consen  401 E-W--TKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD----LV---TIHTD-------NEQLSVVRYSPDGAFL  462 (626)
T ss_pred             e-E--EEEecCceeEeeccCcc-eEEEeeccceEEEEecccce----eE---EEEec-------CCceEEEEEcCCCCEE
Confidence            1 1  11223356788899988 78888888887764443311    11   12222       1378999999999999


Q ss_pred             EEecCCCeEEEEeCCCce-eeeecC-cCCcceEEEEECCCCCEEEEEEccccccCCC
Q psy11885        251 ATGGSDGYVNIWDGFNKK-RLCQFH-RYDTGITSLCFSYDGNVLAIACSYNYELETP  305 (327)
Q Consensus       251 asgs~dg~i~iWd~~~~~-~~~~~~-~~~~~v~~l~fspdg~~la~~~~~~~~~~~~  305 (327)
                      |.||.|+.|+||.+.... .+.... -+.++|+.|.||+|+++|.+-+ .++++..|
T Consensus       463 Avgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S-~d~eiLyW  518 (626)
T KOG2106|consen  463 AVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS-GDYEILYW  518 (626)
T ss_pred             EEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc-CceEEEEE
Confidence            999999999999865433 222221 1227899999999999998775 44555554

>KOG0639|consensus

Probab=99.90  E-value=1.2e-22  Score=174.98  Aligned_cols=266  Identities=17%  Similarity=0.262  Sum_probs=199.4

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE---E-EEe--cCCCceeeEEE-eCCceEEEEecCCcEEEEEcC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL---R-LKY--AHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~---~-~~~--~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      |..-|-++..|. ..+.+.||| .|.|+|||+....-   . .+.  ....-+.+|.+ +++..|++|+.-.++-+||+.
T Consensus       418 HGEvVcAvtIS~-~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  418 HGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             cCcEEEEEEecC-CcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            444567788887 457889888 68899999975321   1 111  12334666765 699999999999999999998


Q ss_pred             CCceee---eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecCCCeEEEEeCCCeE
Q psy11885         87 TQTETV---IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        87 ~~~~~~---~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~v  160 (327)
                      .....+   +..-.....+|+.+||.+..+++..||.|++||++....++.++.+   ..++.++.+|..|-+|+-|++|
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv  575 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV  575 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence            765432   2222234577899999999999999999999999988888887753   3567777789999999999999


Q ss_pred             EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885        161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA  240 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  240 (327)
                      |-||+|+...+   ..+++..++-.+-..|+++-++++..++.+.+  ......   .++.+..         |.+.|-+
T Consensus       576 RcWDlregrql---qqhdF~SQIfSLg~cP~~dWlavGMens~vev--lh~skp---~kyqlhl---------heScVLS  638 (705)
T KOG0639|consen  576 RCWDLREGRQL---QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEV--LHTSKP---EKYQLHL---------HESCVLS  638 (705)
T ss_pred             eehhhhhhhhh---hhhhhhhhheecccCCCccceeeecccCcEEE--EecCCc---cceeecc---------cccEEEE
Confidence            99999986533   33444455556667788888888877777655  222211   1222222         2346889


Q ss_pred             EEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       241 v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      +.|.+-|++|++.+.|+.+..|...-|..+.+.+. .++|.++..|-|.+|+++|+++.
T Consensus       639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             EEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCc
Confidence            99999999999999999999999888888777653 46799999999999999998873

>KOG0313|consensus

Probab=99.90  E-value=7.9e-22  Score=164.59  Aligned_cols=239  Identities=21%  Similarity=0.324  Sum_probs=171.8

Q ss_pred             CCCCCCeeEEEEecCC--CcEEEEEECCCcEEEEECCCCeEE-----EEecCCCceeeEEE-eCCceEEEEecCCcEEEE
Q psy11885         12 SPPEDGITAVKFAPNS--NQFLLASSWDCNVSLYDITNNNLR-----LKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~--~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vw   83 (327)
                      ..|.+.|.+++|.-.+  ...++++|+|.++++|..+.++..     ...+|..+|-++.. +++..++|||+|.+|++|
T Consensus       141 ~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiW  220 (423)
T KOG0313|consen  141 VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIW  220 (423)
T ss_pred             ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeec
Confidence            4577889977777522  235899999999999999887632     23389999999986 689999999999999999


Q ss_pred             EcCCC-------------------------c-eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC
Q psy11885         84 DFNTQ-------------------------T-ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ  137 (327)
Q Consensus        84 d~~~~-------------------------~-~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~  137 (327)
                      +.+..                         . ...+.+|..+|.++.|++ ...++|+++|.+|+.||+.++.+.-++..
T Consensus       221 s~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~  299 (423)
T KOG0313|consen  221 SVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT  299 (423)
T ss_pred             ccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec
Confidence            93210                         0 124678999999999987 67899999999999999999998877776


Q ss_pred             CCcEEEE--ecCCCeEEEEeCCCeEEEEECCCCcc--ceeeecccceeeeEEeEEeeCC-CceEEEeecCeEEEEEccCC
Q psy11885        138 PDKVFTM--SLCGEKFVVGTAGRKVCIWDLRNMGY--IMQRRESSLKFQTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTG  212 (327)
Q Consensus       138 ~~~~~~~--~~~~~~~~~~~~d~~v~iwD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~  212 (327)
                      +....++  .+..+.+++|+.|+.+|+||-|++.-  +.+... .+..-...+.++|.. ..++.++.++...+  ||.+
T Consensus       300 ~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~-gH~nwVssvkwsp~~~~~~~S~S~D~t~kl--WDvR  376 (423)
T KOG0313|consen  300 NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI-GHKNWVSSVKWSPTNEFQLVSGSYDNTVKL--WDVR  376 (423)
T ss_pred             CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeee-cchhhhhheecCCCCceEEEEEecCCeEEE--EEec
Confidence            6555554  44567799999999999999997642  211111 111112345566654 34667788888887  5543


Q ss_pred             cccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885        213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       213 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~  265 (327)
                      .... ..+.+..|.         -.|-++.|. ++..+++||.|.+++|+...
T Consensus       377 S~k~-plydI~~h~---------DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  377 STKA-PLYDIAGHN---------DKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             cCCC-cceeeccCC---------ceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            3221 122333331         247788886 55689999999999998643

>KOG2106|consensus

Probab=99.90  E-value=1.1e-20  Score=163.03  Aligned_cols=274  Identities=16%  Similarity=0.214  Sum_probs=200.7

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe----cC-CCceeeEEEeCCceEEEEecCCcEEEEEcCCCce
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY----AH-SDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~h-~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      +.|..+.|+|.+..++++.| .+.+..|+.+++.+....    .+ ++-|.|++|.++..+++|.++|.|.+|+..+.+.
T Consensus       201 e~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~  279 (626)
T KOG2106|consen  201 EVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRI  279 (626)
T ss_pred             ceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceE
Confidence            46789999998877888877 678999999988754332    22 3568999999888999999999999999876653


Q ss_pred             -eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC---CCcEEEEecCCCeEEEEeCCCeEEEEECC
Q psy11885         91 -TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ---PDKVFTMSLCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        91 -~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~iwD~~  166 (327)
                       +....|++.|.+|+...+|. |+||+.|.+|-+|| ..-+.++..+.   .+.+-.+...+..+++|+..+.|..=.+.
T Consensus       280 ~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~  357 (626)
T KOG2106|consen  280 SKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE  357 (626)
T ss_pred             EeEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence             23348999999999999985 66699999999999 33333333333   23445555554448888888877765555


Q ss_pred             CCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC
Q psy11885        167 NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE  246 (327)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd  246 (327)
                      +.-.....   ....+....+.+|..+.+++++.++..++|.  ...    ..+..          ....++.|++|||.
T Consensus       358 ~~f~~~v~---gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k----~~wt~----------~~~d~~~~~~fhps  418 (626)
T KOG2106|consen  358 NGFTLTVQ---GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK----LEWTK----------IIEDPAECADFHPS  418 (626)
T ss_pred             CCceEEEE---ecccceeeEEcCCChhheeeccCcceEEEcc--CCc----eeEEE----------EecCceeEeeccCc
Confidence            43211100   1111234567788888888888888887744  221    11110          01136789999999


Q ss_pred             CCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEEEcccccccC
Q psy11885        247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTDQETKP  326 (327)
Q Consensus       247 ~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (327)
                      | .+|.|...|.-.+.|.++ +.+.+++.-.+++.+++|||||.+||.|+             ++|.|||.-|-+.|-+|
T Consensus       419 g-~va~Gt~~G~w~V~d~e~-~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-------------~d~~iyiy~Vs~~g~~y  483 (626)
T KOG2106|consen  419 G-VVAVGTATGRWFVLDTET-QDLVTIHTDNEQLSVVRYSPDGAFLAVGS-------------HDNHIYIYRVSANGRKY  483 (626)
T ss_pred             c-eEEEeeccceEEEEeccc-ceeEEEEecCCceEEEEEcCCCCEEEEec-------------CCCeEEEEEECCCCcEE
Confidence            9 999999999999999988 45555554577899999999999999998             89999999998888765

>KOG0267|consensus

Probab=99.90  E-value=7.1e-24  Score=189.53  Aligned_cols=232  Identities=24%  Similarity=0.355  Sum_probs=189.3

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|...|.++..-. ..+.+++||.|..+-+|.+..-. +..+++|..+|-++.|. +...+++|+.+|+||+||++...
T Consensus        25 ~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhceeeeec-cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            34556777777743 56899999999999999987654 34457899999999995 66678899999999999998765


Q ss_pred             e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC---cEEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD---KVFTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      . ..+.+|..++..|.|+|-+.++++|+.|..+.+||.+...|...+..+.   .+..+.+.|..++++++|.++++||+
T Consensus       104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~  183 (825)
T KOG0267|consen  104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL  183 (825)
T ss_pred             hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence            4 4577899999999999999999999999999999999888888887643   35667888999999999999999999


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      +.++...                                                .|..|.         ..+.++.|||
T Consensus       184 ~agk~~~------------------------------------------------ef~~~e---------~~v~sle~hp  206 (825)
T KOG0267|consen  184 TAGKLSK------------------------------------------------EFKSHE---------GKVQSLEFHP  206 (825)
T ss_pred             ccccccc------------------------------------------------cccccc---------ccccccccCc
Confidence            7654210                                                001111         1345677899


Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885        246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                      ..-.+++||.|++|++||+++.+.+........+|.+++|+|||+.+++|....|.
T Consensus       207 ~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  207 LEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             hhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence            88899999999999999999988888887777789999999999999998766655

>KOG0299|consensus

Probab=99.90  E-value=8.1e-22  Score=168.20  Aligned_cols=235  Identities=14%  Similarity=0.277  Sum_probs=168.8

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .|-..|.+++.+++ ++|||+|+.|..|.||+..+.+... +.+|-++|.+++|- ....++++|.|.+|++|+++....
T Consensus       200 ~h~keil~~avS~D-gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  200 GHVKEILTLAVSSD-GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             cccceeEEEEEcCC-CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            57789999999995 6899999999999999999998544 46799999999995 667999999999999999986543


Q ss_pred             -eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-CCcEEEEec-CCCeEEEEeCCCeEEEEECCC
Q psy11885         91 -TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKVFTMSL-CGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus        91 -~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~d~~v~iwD~~~  167 (327)
                       ..+.+|.+.|.+|....-.+.+-.|+.|+++|+|++..-.. -.+.. ...+-++++ +.+.|++|+.+|.|.+|++..
T Consensus       279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLK  357 (479)
T ss_pred             HHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEecccceeeccCCceEEEeeecc
Confidence             45778999999998776666666677999999999943222 12222 223444443 567899999999999999988


Q ss_pred             Cccceeeeccc-c-ee--------eeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885        168 MGYIMQRRESS-L-KF--------QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP  237 (327)
Q Consensus       168 ~~~~~~~~~~~-~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  237 (327)
                      .+.++..+... . +.        =...++..+..+.+++++.+|.+.+|-...+  .+.+.....+        .-..-
T Consensus       358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g--~r~i~~l~~l--------s~~Gf  427 (479)
T KOG0299|consen  358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG--LRAINLLYSL--------SLVGF  427 (479)
T ss_pred             cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC--ccccceeeec--------ccccE
Confidence            77654332211 1 11        1345677777788888888888777555433  2222222111        11235


Q ss_pred             eeEEEEecCCCeEEEe-cCCCeE
Q psy11885        238 VNAISFHQEYNTFATG-GSDGYV  259 (327)
Q Consensus       238 v~~v~~spd~~~lasg-s~dg~i  259 (327)
                      |++++|+++|+.+++| +....+
T Consensus       428 VNsl~f~~sgk~ivagiGkEhRl  450 (479)
T KOG0299|consen  428 VNSLAFSNSGKRIVAGIGKEHRL  450 (479)
T ss_pred             EEEEEEccCCCEEEEeccccccc
Confidence            8999999999966555 333333

>KOG4328|consensus

Probab=99.89  E-value=1.5e-21  Score=166.51  Aligned_cols=285  Identities=17%  Similarity=0.251  Sum_probs=194.3

Q ss_pred             CCCCCCCeeEEEEecCCC-cEEEEEECCCcEEEEECCCCe-----EEEEecCCCceeeEEEe--CCceEEEEecCCcEEE
Q psy11885         11 NSPPEDGITAVKFAPNSN-QFLLASSWDCNVSLYDITNNN-----LRLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKM   82 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~-~~l~s~~~d~~i~iwd~~~~~-----~~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~v   82 (327)
                      ...+.+.|++++|+|..+ .++|+|+..|.|-+||+.+++     ......|..+|.++.|+  +..++++.|.||+||+
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            345668999999999766 688889999999999995322     23344689999999995  5679999999999999


Q ss_pred             EEcCCCceee-eec--CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce-eeeeeC-CCcEEEEe--c-CCCeEEEE
Q psy11885         83 FDFNTQTETV-IGT--HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC-VGNYTQ-PDKVFTMS--L-CGEKFVVG  154 (327)
Q Consensus        83 wd~~~~~~~~-~~~--h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~-~~~~~~-~~~~~~~~--~-~~~~~~~~  154 (327)
                      -|+++..... +..  -..-...+.|+.+...++.+..=|...+||+++++. ...+.. ..++..++  | ++..++++
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~  341 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA  341 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec
Confidence            9998875432 222  233456778887777788887777999999998765 222222 22344444  3 35679999


Q ss_pred             eCCCeEEEEECCCCccce--eeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEcc-CCcccccceeeeeeeeeccCC
Q psy11885        155 TAGRKVCIWDLRNMGYIM--QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLD-TGPEMQKMKYAFKCHRIKEDG  231 (327)
Q Consensus       155 ~~d~~v~iwD~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~h~~~~~~  231 (327)
                      +.|++++|||+|+...-.  ....-.+.-....+.|+|.+..+++.+.+..+.|+... .+.........  .|...  .
T Consensus       342 s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I--~Hn~~--t  417 (498)
T KOG4328|consen  342 SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI--PHNNR--T  417 (498)
T ss_pred             ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee--eccCc--c
Confidence            999999999999753210  01111122234566788888777777777777764431 01111111111  12211  0


Q ss_pred             eeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCc-ceEEE-EECCCCCEEEEEEcccc
Q psy11885        232 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT-GITSL-CFSYDGNVLAIACSYNY  300 (327)
Q Consensus       232 ~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~-~v~~l-~fspdg~~la~~~~~~~  300 (327)
                      ..+..++ -.+|.|+..++++|-.-..|.|+|-..++.+..+..... .|.++ +|+|-+..+|+|+....
T Consensus       418 ~RwlT~f-KA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~G  487 (498)
T KOG4328|consen  418 GRWLTPF-KAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSG  487 (498)
T ss_pred             cccccch-hheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccc
Confidence            1122233 358999999999999999999999888887888766554 57665 99999998888876543

>KOG4283|consensus

Probab=99.89  E-value=4.7e-21  Score=155.29  Aligned_cols=286  Identities=16%  Similarity=0.201  Sum_probs=197.7

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe------EE----E--E----ecCCCceeeEEE-e-CCceEE
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN------LR----L--K----YAHSDPVLDCCF-Q-DAVHSF   72 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~------~~----~--~----~~h~~~v~~~~~-~-~~~~~~   72 (327)
                      ..+|.++|+++...+..++++++|+.||.|.+||++.-.      +.    .  .    -.|+.+|.++-| + +...+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            367889999999999888999999999999999997422      11    1  1    136677888887 4 677778


Q ss_pred             EEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCC---CCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEEecCC
Q psy11885         73 SGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDE---VNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTMSLCG  148 (327)
Q Consensus        73 sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~~~~~  148 (327)
                      |+|.|.++|+||.++-+.......++.|.+-+++|=   ..++++|..|-.||+-|+.+|.+-+.+..+ +.++++.+++
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence            999999999999998776665666778888888773   357888999999999999999998888764 5677777664


Q ss_pred             C---eEEEEeCCCeEEEEECCCCcccee-------eecccce------eeeEEeEEeeCCCceEEEeecCeEEEEEccCC
Q psy11885        149 E---KFVVGTAGRKVCIWDLRNMGYIMQ-------RRESSLK------FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG  212 (327)
Q Consensus       149 ~---~~~~~~~d~~v~iwD~~~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  212 (327)
                      .   .+++|+.||.||+||+|.-.-...       .+.+.+.      .....+++..++..+++...+....+|....+
T Consensus       199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence            3   488999999999999986421111       0011111      11234455556666666677777777665544


Q ss_pred             cccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEE
Q psy11885        213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVL  292 (327)
Q Consensus       213 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~l  292 (327)
                      ....+. +.-.+|..+. +.    .+. +. +.+...|+--=.|+++.++++-++..+..+..|-..|.|.+|-|+=+.+
T Consensus       279 ~ntl~~-~g~~~~n~~~-~~----~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~  350 (397)
T KOG4283|consen  279 RNTLRE-FGPIIHNQTT-SF----AVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQC  350 (397)
T ss_pred             cccccc-cccccccccc-cc----eEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhh
Confidence            322111 1111121110 00    011 22 3344444444456888999988888888888887789999999999999


Q ss_pred             EEEEccccccCC
Q psy11885        293 AIACSYNYELET  304 (327)
Q Consensus       293 a~~~~~~~~~~~  304 (327)
                      .+|..+...+.+
T Consensus       351 ~tg~~d~ni~~w  362 (397)
T KOG4283|consen  351 FTGDMNGNIYMW  362 (397)
T ss_pred             hccccCCccccc
Confidence            888776666655

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=9.8e-20  Score=158.04  Aligned_cols=265  Identities=13%  Similarity=0.102  Sum_probs=173.1

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceE-EEEecCCcEEEEEcCCCcee-eeecCCccEEEEEE
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHS-FSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEY  105 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~-~sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~  105 (327)
                      .++++++.|+.|++||..+++......+...+.+++|+ ++..+ ++++.++.|++||..++... .+..+.. +..+++
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~   80 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFAL   80 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEE
Confidence            46788899999999999988865555544556778885 56666 46778899999999876543 2333333 467899


Q ss_pred             eCCCCEEEEE-ECCCeEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEEEEeCCC-eEEEEECCCCccceeeeccccee
Q psy11885        106 SDEVNCILTG-SWDTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVGTAGR-KVCIWDLRNMGYIMQRRESSLKF  181 (327)
Q Consensus       106 ~~~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~-~v~iwD~~~~~~~~~~~~~~~~~  181 (327)
                      +|+++.++.+ +.|+.|++||+++++.+..+....  ....+++++..++++..++ .+.+||.++.+.......   ..
T Consensus        81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~---~~  157 (300)
T TIGR03866        81 HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV---DQ  157 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc---CC
Confidence            9999877654 568999999999888777665332  3456777888888887764 577889887543221111   11


Q ss_pred             eeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEE-ecCCCeE
Q psy11885        182 QTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT-GGSDGYV  259 (327)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~las-gs~dg~i  259 (327)
                      ....+.+.++++.+++++ .++.+.++....+.....+.  +.......   .. .....++|+|+++++++ .+.++.+
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~--~~~~~~~~---~~-~~~~~i~~s~dg~~~~~~~~~~~~i  231 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT--FEIPGVHP---EA-VQPVGIKLTKDGKTAFVALGPANRV  231 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee--eccccccc---cc-CCccceEECCCCCEEEEEcCCCCeE
Confidence            234567778877665543 35665554443322111111  00000000   00 01346889999998544 4556789


Q ss_pred             EEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        260 NIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       260 ~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      .+||..+++.+..+. +...+++++|+|+|++|+++......+..
T Consensus       232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v  275 (300)
T TIGR03866       232 AVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSV  275 (300)
T ss_pred             EEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEE
Confidence            999998887665543 33468999999999999987654444443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=5.6e-20  Score=159.59  Aligned_cols=257  Identities=12%  Similarity=0.057  Sum_probs=168.1

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceeee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETVI   93 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~~   93 (327)
                      ..+.+++|+|++..++++++.++.|++||..+++..........+..++++ ++..++ +++.|+.+++||+.+......
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~  110 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE  110 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence            347789999965434466778899999999988764433322334566774 666665 445689999999987654322


Q ss_pred             ecCCccEEEEEEeCCCCEEEEEECCC-eEEEEeCCCCceeeeeeCC--CcEEEEecCCCeEEEE-eCCCeEEEEECCCCc
Q psy11885         94 GTHDQPIRAVEYSDEVNCILTGSWDT-SVKMWDPRSSRCVGNYTQP--DKVFTMSLCGEKFVVG-TAGRKVCIWDLRNMG  169 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~~~l~sgs~d~-~i~lwdl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~d~~v~iwD~~~~~  169 (327)
                      ..+...+..++|+|+++.+++++.++ .+..||.++++........  .....+++++..++++ ..++.|++||+++.+
T Consensus       111 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~  190 (300)
T TIGR03866       111 IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK  190 (300)
T ss_pred             eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence            22334468899999999999988765 5677899888776554322  2345667778877655 458999999998765


Q ss_pred             cceeeecc--c---ceeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        170 YIMQRRES--S---LKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       170 ~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      .+......  .   .......+.++++++.++++. .++...+  |+....  +...... +         ...+.+++|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v--~d~~~~--~~~~~~~-~---------~~~~~~~~~  256 (300)
T TIGR03866       191 VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV--VDAKTY--EVLDYLL-V---------GQRVWQLAF  256 (300)
T ss_pred             eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE--EECCCC--cEEEEEE-e---------CCCcceEEE
Confidence            43221110  0   011123456677776644443 3334444  444321  1111110 0         014678999


Q ss_pred             ecCCCeEEEe-cCCCeEEEEeCCCceeeeecCcCCcceEEEEECC
Q psy11885        244 HQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  287 (327)
Q Consensus       244 spd~~~lasg-s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp  287 (327)
                      +|++++|+++ +.+++|++||+.+++.+..+... ...+.++|+|
T Consensus       257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            9999999876 56899999999999988887643 5569999987

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0289|consensus

Probab=99.89  E-value=5.2e-21  Score=162.22  Aligned_cols=247  Identities=16%  Similarity=0.191  Sum_probs=180.6

Q ss_pred             CCceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEE-eCCceEEEEecCCcEE
Q psy11885          4 SKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLK   81 (327)
Q Consensus         4 ~~~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~   81 (327)
                      +.+.+.....|...|+.+.|+|+ ...+++++.|..|+||.+...+ ......|..+|+.+.. +.+.++++++.|++..
T Consensus       250 s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~  328 (506)
T KOG0289|consen  250 SNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA  328 (506)
T ss_pred             hhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEE
Confidence            34445555667789999999995 4688999999999999997765 3445579999999988 5899999999999999


Q ss_pred             EEEcCCCceeeeecCC---ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecCCCeEEEEe
Q psy11885         82 MFDFNTQTETVIGTHD---QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLCGEKFVVGT  155 (327)
Q Consensus        82 vwd~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  155 (327)
                      +-|++++.......++   -.+++.+|+|||..|.+|..|+.|++||+.+...+..|..+   ...+.|+-+|-.+++++
T Consensus       329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a  408 (506)
T KOG0289|consen  329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA  408 (506)
T ss_pred             EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe
Confidence            9999988776544443   34899999999999999999999999999988777777653   33455666788899999


Q ss_pred             CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCc-ccccceeeeeeeeeccCCeee
Q psy11885        156 AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP-EMQKMKYAFKCHRIKEDGIEK  234 (327)
Q Consensus       156 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~h~~~~~~~~~  234 (327)
                      .|+.|++||+|..+........... ....+.+.+.+..+.++  ..+..|+.++... .+..+. .+..|         
T Consensus       409 dd~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~--g~~l~Vy~~~k~~k~W~~~~-~~~~~---------  475 (506)
T KOG0289|consen  409 DDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLGIA--GSDLQVYICKKKTKSWTEIK-ELADH---------  475 (506)
T ss_pred             cCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCeEEee--cceeEEEEEecccccceeee-hhhhc---------
Confidence            9999999999976543222222211 24556666666655555  4455555544222 111111 11111         


Q ss_pred             EEEeeEEEEecCCCeEEEecCCCeEEEEeC
Q psy11885        235 IYPVNAISFHQEYNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       235 ~~~v~~v~~spd~~~lasgs~dg~i~iWd~  264 (327)
                      -...+++.|....++++++|-|..++++.+
T Consensus       476 sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  476 SGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ccccceeeecccceEEeeccchhheEEeec
Confidence            124678999999999999999999888753

>KOG0294|consensus

Probab=99.89  E-value=1.8e-20  Score=153.11  Aligned_cols=255  Identities=14%  Similarity=0.243  Sum_probs=184.3

Q ss_pred             EEEEECCCcEEEEECCCCe----------EEEE---ecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce-eeeecC
Q psy11885         31 LLASSWDCNVSLYDITNNN----------LRLK---YAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE-TVIGTH   96 (327)
Q Consensus        31 l~s~~~d~~i~iwd~~~~~----------~~~~---~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h   96 (327)
                      +++|++...|.=+++....          +...   .+|.+++++++. ++.+++|||.|-+|++||+.++.. ..+..|
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV-s~~~~aSGssDetI~IYDm~k~~qlg~ll~H   82 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV-SGPYVASGSSDETIHIYDMRKRKQLGILLSH   82 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe-cceeEeccCCCCcEEEEeccchhhhcceecc
Confidence            6778888777777664221          1112   258888888875 477999999999999999988765 356689


Q ss_pred             CccEEEEEEeCCCC--EEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecCCCeEEEEeCCCeEEEEECCCCccc
Q psy11885         97 DQPIRAVEYSDEVN--CILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus        97 ~~~V~~l~~~~~~~--~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      .+.|+++.|.+.-.  .|++|+.||.|.+|+...-+++..+..+   ..-+++.|++...++.+.|+.+|+||+-+++..
T Consensus        83 agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a  162 (362)
T KOG0294|consen   83 AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA  162 (362)
T ss_pred             ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc
Confidence            99999999998764  8999999999999999888888887653   234667888988889999999999999766532


Q ss_pred             eeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE
Q psy11885        172 MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA  251 (327)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la  251 (327)
                      ...   .+......+.|.|.++.++++..+ .+-++-.+.......+...              ..+-|+.| -++..|+
T Consensus       163 ~v~---~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~--------------~r~l~~~~-l~~~~L~  223 (362)
T KOG0294|consen  163 FVL---NLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP--------------KRILCATF-LDGSELL  223 (362)
T ss_pred             eee---ccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc--------------ccceeeee-cCCceEE
Confidence            211   122223447788888877776543 3333333332211111110              01334444 3677999


Q ss_pred             EecCCCeEEEEeCCCceeeeecCcCCcceEEEE--ECCCCCEEEEEEccccccCCC
Q psy11885        252 TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC--FSYDGNVLAIACSYNYELETP  305 (327)
Q Consensus       252 sgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~--fspdg~~la~~~~~~~~~~~~  305 (327)
                      +|++|+.|++||..+...+..+.+|+.+|-++.  -.|++.||+++++++...-|.
T Consensus       224 vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  224 VGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD  279 (362)
T ss_pred             EecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence            999999999999998888999999999999987  367899999999987665553

>KOG0301|consensus

Probab=99.89  E-value=1.6e-20  Score=167.56  Aligned_cols=269  Identities=17%  Similarity=0.306  Sum_probs=190.4

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE---EEEecCCCceee-EEE--eCCceEEEEecCCcEEEEEc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL---RLKYAHSDPVLD-CCF--QDAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~h~~~v~~-~~~--~~~~~~~sgs~Dg~i~vwd~   85 (327)
                      +.|...|.++++.+  +..++++|.||++++|+-..++.   ...+.|.+-+.. ++|  +++..+++|+.|.+|.+|.+
T Consensus        11 ~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~   88 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL   88 (745)
T ss_pred             ccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence            56778899999886  35799999999999999877773   234456665554 677  36667999999999999998


Q ss_pred             CCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEEEE-ecCCCeEEEEeCCCeEEE
Q psy11885         86 NTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVFTM-SLCGEKFVVGTAGRKVCI  162 (327)
Q Consensus        86 ~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~d~~v~i  162 (327)
                      .+..+ .++.+|+..|.++....++. ++|||+|.++++|-.  +++...+..+. .+.++ .+..+.+++|+.|++|++
T Consensus        89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIkl  165 (745)
T KOG0301|consen   89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKL  165 (745)
T ss_pred             CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeee
Confidence            87765 46889999999999877776 999999999999976  44555555443 34443 334558999999999999


Q ss_pred             EECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        163 WDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       163 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                      |.-.+.   ...... +..-.+.++..+ ...++.++.+|.++.|..+ +.    ....+.+|+         .-+.+++
T Consensus       166 Wk~~~~---l~tf~g-HtD~VRgL~vl~-~~~flScsNDg~Ir~w~~~-ge----~l~~~~ght---------n~vYsis  226 (745)
T KOG0301|consen  166 WKGGTL---LKTFSG-HTDCVRGLAVLD-DSHFLSCSNDGSIRLWDLD-GE----VLLEMHGHT---------NFVYSIS  226 (745)
T ss_pred             ccCCch---hhhhcc-chhheeeeEEec-CCCeEeecCCceEEEEecc-Cc----eeeeeeccc---------eEEEEEE
Confidence            975332   111111 111124444443 3467777777777765442 22    122333333         3578888


Q ss_pred             EecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEEEcc
Q psy11885        243 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVT  320 (327)
Q Consensus       243 ~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (327)
                      ..++++.++++++|++++||+..  +..+.+.-....||++.+=++|..+ +||+             ++.|+|+.+-
T Consensus       227 ~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIv-vg~S-------------DG~VrVfT~~  288 (745)
T KOG0301|consen  227 MALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIV-VGGS-------------DGRVRVFTVD  288 (745)
T ss_pred             ecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEE-Eecc-------------CceEEEEEec
Confidence            77888899999999999999865  5666665555589999998888665 5664             5566666654

>KOG0300|consensus

Probab=99.88  E-value=1.5e-21  Score=159.68  Aligned_cols=227  Identities=19%  Similarity=0.332  Sum_probs=171.7

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEEecCCcEEEEE----
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFD----   84 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd----   84 (327)
                      ...|+++|..++-.. ...++.+++.|.+.+||.++++++...| +|.+.|+++.|+ .+..++++|.|++..+|.    
T Consensus       144 ~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~  222 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVN  222 (481)
T ss_pred             hcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhc
Confidence            367889999999887 4568999999999999999999976655 799999999996 667778999999999996    


Q ss_pred             --cCCC-------------------------------c----eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCC
Q psy11885         85 --FNTQ-------------------------------T----ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR  127 (327)
Q Consensus        85 --~~~~-------------------------------~----~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~  127 (327)
                        +.++                               .    ...+.+|.+.|.+..|-..|+.++++++|.+..+||++
T Consensus       223 ~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE  302 (481)
T KOG0300|consen  223 WEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE  302 (481)
T ss_pred             CcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeec
Confidence              1110                               0    01245688889999999899999999999999999999


Q ss_pred             CCceeeeeeCCCcEEE---EecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeE
Q psy11885        128 SSRCVGNYTQPDKVFT---MSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRA  204 (327)
Q Consensus       128 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (327)
                      +++++..+..+.....   ..+....+++++.|-+.|+||+|.-          +    ..+..                
T Consensus       303 tge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea----------I----~sV~V----------------  352 (481)
T KOG0300|consen  303 TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA----------I----QSVAV----------------  352 (481)
T ss_pred             cCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh----------c----ceeee----------------
Confidence            9999998887665332   2344556778899999999999731          0    00110                


Q ss_pred             EEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee-eeecCcCCcceEEE
Q psy11885        205 AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR-LCQFHRYDTGITSL  283 (327)
Q Consensus       205 ~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~-~~~~~~~~~~v~~l  283 (327)
                                       |.+|         ...|+++.|.-|. .+++||+|.+|++||+++.+. +.++. -+++++.+
T Consensus       353 -----------------FQGH---------tdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRv  404 (481)
T KOG0300|consen  353 -----------------FQGH---------TDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRV  404 (481)
T ss_pred             -----------------eccc---------ccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCcccee
Confidence                             1112         1247778887654 689999999999999988664 44453 45677888


Q ss_pred             EECCCCCEEEEEE
Q psy11885        284 CFSYDGNVLAIAC  296 (327)
Q Consensus       284 ~fspdg~~la~~~  296 (327)
                      +.|.-+..||.-.
T Consensus       405 avs~g~~iIAiPh  417 (481)
T KOG0300|consen  405 AVSKGHPIIAIPH  417 (481)
T ss_pred             EeecCCceEEecc
Confidence            8887666776653

>KOG0302|consensus

Probab=99.87  E-value=1.5e-20  Score=156.89  Aligned_cols=240  Identities=19%  Similarity=0.279  Sum_probs=164.4

Q ss_pred             CCCCCCCeeEEEEecCCCc-EEEEEECCCcEEEEECCCC----------------e-EEEEecCCCceeeEEEeC--Cce
Q psy11885         11 NSPPEDGITAVKFAPNSNQ-FLLASSWDCNVSLYDITNN----------------N-LRLKYAHSDPVLDCCFQD--AVH   70 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~-~l~s~~~d~~i~iwd~~~~----------------~-~~~~~~h~~~v~~~~~~~--~~~   70 (327)
                      ..+|.+.|+.++-++-++. +.++=+..|.|+|||+...                + +..+..|++.-..++|++  ...
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            4667788888888875433 4555577899999997421                1 112235777778889964  556


Q ss_pred             EEEEecCCcEEEEEcCCCcee----eeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCc---eeeeeeCCCcEE
Q psy11885         71 SFSGGLDCTLKMFDFNTQTET----VIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSR---CVGNYTQPDKVF  142 (327)
Q Consensus        71 ~~sgs~Dg~i~vwd~~~~~~~----~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~---~~~~~~~~~~~~  142 (327)
                      ++||.--+.|++|...++.-.    .+.+|+..|-.|+|||. ...|+|+|.|++|||||+|.+.   ++..-.+...+-
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            788877889999998776432    35569999999999984 5688999999999999999873   443322223344


Q ss_pred             EEecCC--CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccccee
Q psy11885        143 TMSLCG--EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY  220 (327)
Q Consensus       143 ~~~~~~--~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  220 (327)
                      .++++.  ..|++|+.||+++|||+|+.+.-                                             ....
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~---------------------------------------------~pVA  341 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSG---------------------------------------------QPVA  341 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCC---------------------------------------------Ccce
Confidence            445543  36999999999999999964310                                             0111


Q ss_pred             eeeeeeeccCCeeeEEEeeEEEEec-CCCeEEEecCCCeEEEEeCCCcee----------------eeecCcC--CcceE
Q psy11885        221 AFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGGSDGYVNIWDGFNKKR----------------LCQFHRY--DTGIT  281 (327)
Q Consensus       221 ~~~~h~~~~~~~~~~~~v~~v~~sp-d~~~lasgs~dg~i~iWd~~~~~~----------------~~~~~~~--~~~v~  281 (327)
                      .|+.|.         .||++|.|+| +.+.||++|.|..|.|||+.--.-                .+.+.-|  +..+.
T Consensus       342 ~fk~Hk---------~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~K  412 (440)
T KOG0302|consen  342 TFKYHK---------APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVK  412 (440)
T ss_pred             eEEecc---------CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhh
Confidence            223343         3799999998 457889999999999999742110                1112223  33577


Q ss_pred             EEEECCCC-CEEEEEEccccccCC
Q psy11885        282 SLCFSYDG-NVLAIACSYNYELET  304 (327)
Q Consensus       282 ~l~fspdg-~~la~~~~~~~~~~~  304 (327)
                      .|+|++.- -+|++.+.+++.+-+
T Consensus       413 evhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  413 EVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             hheeccCCCCeEEEecccceeEEE
Confidence            89999863 366666667666554

>KOG1446|consensus

Probab=99.87  E-value=1.3e-19  Score=148.28  Aligned_cols=232  Identities=13%  Similarity=0.195  Sum_probs=165.1

Q ss_pred             CCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCce
Q psy11885         56 HSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRC  131 (327)
Q Consensus        56 h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~  131 (327)
                      ....|.++.|+ +|..+++++.|-++++||..++.. ..+..+...|..++|-...+.++.++.  |.+||..++.+++.
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            45689999996 788888999999999999988765 456666777888899877777777776  99999999999999


Q ss_pred             eeeeeCCCc-E--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEE
Q psy11885        132 VGNYTQPDK-V--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEY  208 (327)
Q Consensus       132 ~~~~~~~~~-~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  208 (327)
                      ++.+.++.. +  ++++|-++.+++++.|++||+||+|..+.........    ...+++.|.+-.++++....  .|.+
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~----~pi~AfDp~GLifA~~~~~~--~IkL  166 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG----RPIAAFDPEGLIFALANGSE--LIKL  166 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC----CcceeECCCCcEEEEecCCC--eEEE
Confidence            999987654 3  4456668899999999999999999654321111111    12345556554455555444  4444


Q ss_pred             ccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcce---EEEEE
Q psy11885        209 LDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI---TSLCF  285 (327)
Q Consensus       209 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v---~~l~f  285 (327)
                      +|...-.......+....      +.....+.+.|||||+.|+.+...+.+++-|..+|..+..+..+...-   .+.+|
T Consensus       167 yD~Rs~dkgPF~tf~i~~------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  167 YDLRSFDKGPFTTFSITD------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF  240 (311)
T ss_pred             EEecccCCCCceeEccCC------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence            543221111111111100      111236789999999999999999999999999999888876654421   46799


Q ss_pred             CCCCCEEEEEEccc
Q psy11885        286 SYDGNVLAIACSYN  299 (327)
Q Consensus       286 spdg~~la~~~~~~  299 (327)
                      +|||+.+.+|+.++
T Consensus       241 tPds~Fvl~gs~dg  254 (311)
T KOG1446|consen  241 TPDSKFVLSGSDDG  254 (311)
T ss_pred             CCCCcEEEEecCCC
Confidence            99999999886643

>KOG0300|consensus

Probab=99.87  E-value=1.6e-20  Score=153.77  Aligned_cols=244  Identities=18%  Similarity=0.259  Sum_probs=164.5

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEEC------CC------------------------------C-eEE---
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDI------TN------------------------------N-NLR---   51 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~------~~------------------------------~-~~~---   51 (327)
                      ..|.+.|++|+|++ ++.++++++-|++..||..      .+                              + .++   
T Consensus       187 ~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl  265 (481)
T KOG0300|consen  187 TGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPL  265 (481)
T ss_pred             cccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeee
Confidence            45789999999999 5689999999999999971      10                              0 000   


Q ss_pred             -EEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC
Q psy11885         52 -LKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS  128 (327)
Q Consensus        52 -~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~  128 (327)
                       .+.+|...|.++.| ..+.+++++|+|.+..+||++++.. ..+.+|+...+.++-+|..+++++++.|-+.|+||.+.
T Consensus       266 ~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe  345 (481)
T KOG0300|consen  266 MRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE  345 (481)
T ss_pred             eeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh
Confidence             12357777888888 6889999999999999999999876 46789999999999999999999999999999999984


Q ss_pred             Cc-eeeeeeCC-CcEEEEecC-CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEE
Q psy11885        129 SR-CVGNYTQP-DKVFTMSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAA  205 (327)
Q Consensus       129 ~~-~~~~~~~~-~~~~~~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (327)
                      .- .+..|+.+ ..+.+..+. ++.+++|+.|++|++||++++.......  ....+.+.++.....+.+++--.+..+.
T Consensus       346 aI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATI--RtdS~~NRvavs~g~~iIAiPhDNRqvR  423 (481)
T KOG0300|consen  346 AIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATI--RTDSPANRVAVSKGHPIIAIPHDNRQVR  423 (481)
T ss_pred             hcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceee--ecCCccceeEeecCCceEEeccCCceEE
Confidence            32 23345543 345555554 7789999999999999999876432211  1112223333332222222222223333


Q ss_pred             EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC--CeEEEecCCCeEEEEeCCCc
Q psy11885        206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY--NTFATGGSDGYVNIWDGFNK  267 (327)
Q Consensus       206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~--~~lasgs~dg~i~iWd~~~~  267 (327)
                      ++.+......+.....-.+         |-.-|.|++|..+-  --|++++.|+.+.=|++...
T Consensus       424 lfDlnG~RlaRlPrtsRqg---------HrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  424 LFDLNGNRLARLPRTSRQG---------HRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             EEecCCCccccCCcccccc---------cceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            3332211111111111123         33458899997543  34789999999999987654

>KOG0269|consensus

Probab=99.87  E-value=1.9e-21  Score=175.27  Aligned_cols=228  Identities=21%  Similarity=0.304  Sum_probs=167.0

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCC---CeEE-EEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCCCce
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITN---NNLR-LKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~---~~~~-~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .+..++|+.-..++||+++..|.|.+||+..   +++. .+-.|.-.++++.|+  ....++|||.||+||+||++....
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            4567888865567899999999999999987   3332 344799999999995  678999999999999999987765


Q ss_pred             e-eeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCC-ceeeeeeCC-CcEEE--EecCCCeEEEEeCCCeEEEEE
Q psy11885         91 T-VIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSS-RCVGNYTQP-DKVFT--MSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        91 ~-~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~-~~~~~~~~~-~~~~~--~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      . .+.+....|+.|.|+| .+..++++...|.+++||+|.. ++...+..+ +.+++  ++|++..||+|+.|+.|+|||
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            3 4455667899999998 5788999999999999999874 465555543 34444  556667799999999999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      +...+.      ..                                             .|.     +..+.||.++.|-
T Consensus       249 ~t~~~~------~~---------------------------------------------~~t-----InTiapv~rVkWR  272 (839)
T KOG0269|consen  249 MTDSRA------KP---------------------------------------------KHT-----INTIAPVGRVKWR  272 (839)
T ss_pred             ccCCCc------cc---------------------------------------------eeE-----Eeecceeeeeeec
Confidence            864210      00                                             000     1123578899999


Q ss_pred             cCCCe-EEEec--CCCeEEEEeCCCce-eeeecCcCCcceEEEEECCCCC-EEEEEEcccc
Q psy11885        245 QEYNT-FATGG--SDGYVNIWDGFNKK-RLCQFHRYDTGITSLCFSYDGN-VLAIACSYNY  300 (327)
Q Consensus       245 pd~~~-lasgs--~dg~i~iWd~~~~~-~~~~~~~~~~~v~~l~fspdg~-~la~~~~~~~  300 (327)
                      |+.++ ||+.+  .|-.|+|||++-+- +...+..|...++.++|-.... .|-+.+.++.
T Consensus       273 P~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t  333 (839)
T KOG0269|consen  273 PARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGT  333 (839)
T ss_pred             cCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccH
Confidence            98765 56655  36789999987543 3456777888899999976334 4444444433

>KOG0268|consensus

Probab=99.87  E-value=2e-21  Score=161.40  Aligned_cols=231  Identities=16%  Similarity=0.168  Sum_probs=162.9

Q ss_pred             ecCCCceeeEEEeCC--ceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885         54 YAHSDPVLDCCFQDA--VHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR  130 (327)
Q Consensus        54 ~~h~~~v~~~~~~~~--~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~  130 (327)
                      .+|.+.|.+++=++.  ..++||+.||.|++||+.+..+ ..+..|.+.|+.|++..  ..+++++.|.+|+.|.... .
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~  139 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-P  139 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-C
Confidence            468899998886432  5789999999999999988765 46789999999999987  6799999999999999754 4


Q ss_pred             eeeeeeCCCcEEEEecC--CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe-ecCeEEEE
Q psy11885        131 CVGNYTQPDKVFTMSLC--GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS-IEGRAAVE  207 (327)
Q Consensus       131 ~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~  207 (327)
                      ++.++........++-.  ++.+++++  ..|.|||.....++..... .. ....++.++|....++.++ .++.+.++
T Consensus       140 p~~tilg~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smsw-G~-Dti~svkfNpvETsILas~~sDrsIvLy  215 (433)
T KOG0268|consen  140 PLHTILGKSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSW-GA-DSISSVKFNPVETSILASCASDRSIVLY  215 (433)
T ss_pred             cceeeeccccccccccccccccccccC--ceeeecccccCCccceeec-CC-CceeEEecCCCcchheeeeccCCceEEE
Confidence            55555554444333332  44466554  4699999875443321110 00 1235778888776655555 45554443


Q ss_pred             EccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee-eeecCcCCcceEEEEEC
Q psy11885        208 YLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR-LCQFHRYDTGITSLCFS  286 (327)
Q Consensus       208 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~-~~~~~~~~~~v~~l~fs  286 (327)
                      ..-.+....++...+              .-|.|+|+|..-.|++|++|..++.+|++.... +...++|-+.|.+++||
T Consensus       216 D~R~~~Pl~KVi~~m--------------RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs  281 (433)
T KOG0268|consen  216 DLRQASPLKKVILTM--------------RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS  281 (433)
T ss_pred             ecccCCccceeeeec--------------cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence            333333333332221              247899999988999999999999999987654 55667888899999999


Q ss_pred             CCCCEEEEEEccccccCCC
Q psy11885        287 YDGNVLAIACSYNYELETP  305 (327)
Q Consensus       287 pdg~~la~~~~~~~~~~~~  305 (327)
                      |.|+-+++|+.+-...+.+
T Consensus       282 ptG~EfvsgsyDksIRIf~  300 (433)
T KOG0268|consen  282 PTGQEFVSGSYDKSIRIFP  300 (433)
T ss_pred             CCcchhccccccceEEEee
Confidence            9999999998655555444

>KOG1036|consensus

Probab=99.86  E-value=1.3e-19  Score=147.67  Aligned_cols=233  Identities=14%  Similarity=0.158  Sum_probs=160.4

Q ss_pred             CCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee
Q psy11885         56 HSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN  134 (327)
Q Consensus        56 h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~  134 (327)
                      ..+.|.++.|+ ..+.|+.+++||++++||+..........|+.|+.+.+|.++ ..+++|+-||.||++|+.+++....
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~i   90 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQI   90 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceee
Confidence            45778999995 567888889999999999998866666789999999999874 5799999999999999998876544


Q ss_pred             eeCCCcEEE--EecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCC
Q psy11885        135 YTQPDKVFT--MSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG  212 (327)
Q Consensus       135 ~~~~~~~~~--~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  212 (327)
                      -.+...+.+  ...-...+++|++|++|++||.|+...+..     ...........-.++.+++++.+..+.+  ||..
T Consensus        91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~-----~d~~kkVy~~~v~g~~LvVg~~~r~v~i--yDLR  163 (323)
T KOG1036|consen   91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT-----FDQGKKVYCMDVSGNRLVVGTSDRKVLI--YDLR  163 (323)
T ss_pred             ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc-----cccCceEEEEeccCCEEEEeecCceEEE--EEcc
Confidence            444444444  444467799999999999999996221110     1101112223345567777777776665  4432


Q ss_pred             cccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCc----eeeeecCcCC---------cc
Q psy11885        213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK----KRLCQFHRYD---------TG  279 (327)
Q Consensus       213 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~----~~~~~~~~~~---------~~  279 (327)
                      ......       +.++..  -..++.|+++-|.+.-+|++|-||.|.+=.....    +.-..|+.|.         -|
T Consensus       164 n~~~~~-------q~reS~--lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP  234 (323)
T KOG1036|consen  164 NLDEPF-------QRRESS--LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP  234 (323)
T ss_pred             cccchh-------hhcccc--ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence            211100       000111  1136889999999999999999999876444333    1111222221         27


Q ss_pred             eEEEEECCCCCEEEEEEccccccCCC
Q psy11885        280 ITSLCFSYDGNVLAIACSYNYELETP  305 (327)
Q Consensus       280 v~~l~fspdg~~la~~~~~~~~~~~~  305 (327)
                      |++|+|+|--+.||||++++....|.
T Consensus       235 VNai~Fhp~~~tfaTgGsDG~V~~Wd  260 (323)
T KOG1036|consen  235 VNAIAFHPIHGTFATGGSDGIVNIWD  260 (323)
T ss_pred             eceeEeccccceEEecCCCceEEEcc
Confidence            99999999999999999888777773

>KOG0321|consensus

Probab=99.86  E-value=5.5e-20  Score=162.78  Aligned_cols=249  Identities=16%  Similarity=0.241  Sum_probs=170.0

Q ss_pred             CceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE---EEecCCCceeeEEEe--CCceEEEEecCCc
Q psy11885          5 KTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR---LKYAHSDPVLDCCFQ--DAVHSFSGGLDCT   79 (327)
Q Consensus         5 ~~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~   79 (327)
                      ++++.....|.+.|..++|-| +...|++++-|.+++.||++++++.   ...+|...|.++||.  +...+++|+.||.
T Consensus        90 e~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~  168 (720)
T KOG0321|consen   90 ERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE  168 (720)
T ss_pred             hhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCc
Confidence            346778899999999999999 7789999999999999999998853   356899999999995  5567779999999


Q ss_pred             EEEEEcCCCce-------------------------eee---ecCCc----cEEEEEEeCCCCEEEEEEC-CCeEEEEeC
Q psy11885         80 LKMFDFNTQTE-------------------------TVI---GTHDQ----PIRAVEYSDEVNCILTGSW-DTSVKMWDP  126 (327)
Q Consensus        80 i~vwd~~~~~~-------------------------~~~---~~h~~----~V~~l~~~~~~~~l~sgs~-d~~i~lwdl  126 (327)
                      |.+||+.-...                         ..+   ..+..    .|+.+.| .|...|++++. |+.|++||+
T Consensus       169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDL  247 (720)
T KOG0321|consen  169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDL  247 (720)
T ss_pred             EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-eccceeeeccCCCcceEEEee
Confidence            99999753220                         000   01222    3444544 56678998887 999999999


Q ss_pred             CCCceeeeee--------CC----Cc--EEEEecCCCeEEEEeCCCeEEEEECCCCccce-eeecccce-eeeEEeEEee
Q psy11885        127 RSSRCVGNYT--------QP----DK--VFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIM-QRRESSLK-FQTRCIKCFP  190 (327)
Q Consensus       127 ~~~~~~~~~~--------~~----~~--~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~-~~~~~~~~-~~~~~~~~~~  190 (327)
                      +...+.....        -+    ..  .+.++..|.++++.+.|+.|..||+++...-. ......+. .+-..-...|
T Consensus       248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp  327 (720)
T KOG0321|consen  248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP  327 (720)
T ss_pred             cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCC
Confidence            8765432211        11    11  23344558888888889999999998754311 11111111 0111223457


Q ss_pred             CCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC-CCeEEEecCCCeEEEEeCCCc
Q psy11885        191 NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-YNTFATGGSDGYVNIWDGFNK  267 (327)
Q Consensus       191 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd-~~~lasgs~dg~i~iWd~~~~  267 (327)
                      ++..++.++.+....+|..+.....   ...+.+         |...|.+++|.|. -.-+|++++|.+++||++.++
T Consensus       328 d~~~l~SgSsd~~ayiw~vs~~e~~---~~~l~G---------ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  328 DDCSLLSGSSDEQAYIWVVSSPEAP---PALLLG---------HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CCceEeccCCCcceeeeeecCccCC---hhhhhC---------cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            7777888888888888776543221   112223         3345889999874 345778899999999998654

>KOG0301|consensus

Probab=99.86  E-value=4.6e-20  Score=164.68  Aligned_cols=229  Identities=16%  Similarity=0.205  Sum_probs=163.1

Q ss_pred             CCCCeeE-EEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCcee
Q psy11885         14 PEDGITA-VKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        14 ~~~~I~~-i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~   91 (327)
                      |++=|.. ++|.+.++..+++|++|.+|.+|...+... ..+.+|+..|.++..-....++|||+|.++++|-...-. .
T Consensus        56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~-~  134 (745)
T KOG0301|consen   56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELV-Y  134 (745)
T ss_pred             CcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhh-c
Confidence            3444554 777764444689999999999999988874 456689999988886444449999999999999764322 3


Q ss_pred             eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-EEEEec-CCCeEEEEeCCCeEEEEECCCCc
Q psy11885         92 VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-VFTMSL-CGEKFVVGTAGRKVCIWDLRNMG  169 (327)
Q Consensus        92 ~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~v~iwD~~~~~  169 (327)
                      .+.+|+.+|+++..-|++ .++||+.|.+|++|.-  +++++++..+.. +-.+.. +...|++++.||.|++||+. ++
T Consensus       135 ~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-ge  210 (745)
T KOG0301|consen  135 SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-GE  210 (745)
T ss_pred             ccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-Cc
Confidence            478999999999998987 8999999999999984  678888877654 333333 34579999999999999994 33


Q ss_pred             cceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe
Q psy11885        170 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT  249 (327)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~  249 (327)
                      .+.  +...+.....++....+.+.+++.+.+++..+|.  .....+.+.     |.        ...++++.+-++| -
T Consensus       211 ~l~--~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~--~~e~~q~I~-----lP--------ttsiWsa~~L~Ng-D  272 (745)
T KOG0301|consen  211 VLL--EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWK--KDECVQVIT-----LP--------TTSIWSAKVLLNG-D  272 (745)
T ss_pred             eee--eeeccceEEEEEEecCCCCeEEEecCCceEEEee--cCceEEEEe-----cC--------ccceEEEEEeeCC-C
Confidence            221  1223334456677666667777777777777744  332211111     11        1136777776666 4


Q ss_pred             EEEecCCCeEEEEeCC
Q psy11885        250 FATGGSDGYVNIWDGF  265 (327)
Q Consensus       250 lasgs~dg~i~iWd~~  265 (327)
                      +++|+.||.||||...
T Consensus       273 Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  273 IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEEeccCceEEEEEec
Confidence            7788899999999865

>KOG0308|consensus

Probab=99.85  E-value=1.4e-20  Score=166.82  Aligned_cols=236  Identities=19%  Similarity=0.338  Sum_probs=174.0

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe---EEEEecCCCceeeEEE--eCCceEEEEecCCcEEEEEcCC
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN---LRLKYAHSDPVLDCCF--QDAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~h~~~v~~~~~--~~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      .|.+=|+.++..-+ ++.|+++|.|-+|++|+...+.   ......|++-|.|+++  .+...++|||.|+.|.+||+++
T Consensus        71 ~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~  149 (735)
T KOG0308|consen   71 HHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINT  149 (735)
T ss_pred             hhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccC
Confidence            34455666666663 4689999999999999998764   2334469999999998  4677888999999999999997


Q ss_pred             Ccee-----------eee-cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC---cEEEEecCCCeEE
Q psy11885         88 QTET-----------VIG-THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD---KVFTMSLCGEKFV  152 (327)
Q Consensus        88 ~~~~-----------~~~-~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~---~~~~~~~~~~~~~  152 (327)
                      +...           -+. ++..+|.+++..+.|..|++|+..+.||+||.++++.+..+.++.   .++-+..+|.+++
T Consensus       150 ~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~l  229 (735)
T KOG0308|consen  150 GTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLL  229 (735)
T ss_pred             cchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEe
Confidence            6321           122 678899999999999999999999999999999998888777542   4556677899999


Q ss_pred             EEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCe
Q psy11885        153 VGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI  232 (327)
Q Consensus       153 ~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~  232 (327)
                      +++.|++|++||++.++               |+...                                 ..|.      
T Consensus       230 s~sSDgtIrlWdLgqQr---------------Cl~T~---------------------------------~vH~------  255 (735)
T KOG0308|consen  230 SASSDGTIRLWDLGQQR---------------CLATY---------------------------------IVHK------  255 (735)
T ss_pred             ecCCCceEEeeeccccc---------------eeeeE---------------------------------Eecc------
Confidence            99999999999998643               21100                                 0011      


Q ss_pred             eeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCCC
Q psy11885        233 EKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPD  307 (327)
Q Consensus       233 ~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~  307 (327)
                         -.|+++..+|+-+.+.+|+.||.|..=|+++......+...+.+|..+..+.+.+-+ ..+..+.-+.+|+.
T Consensus       256 ---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  256 ---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRWKL  326 (735)
T ss_pred             ---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCc-eeeeccccceecCC
Confidence               025667777888899999999999999988864444444455677777777544433 22344445555543

>KOG1408|consensus

Probab=99.85  E-value=3.6e-19  Score=159.56  Aligned_cols=271  Identities=13%  Similarity=0.152  Sum_probs=176.6

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCC----CeEEEEecCCCceeeEEE-e-----------CCceEEEEecCCcEEE
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITN----NNLRLKYAHSDPVLDCCF-Q-----------DAVHSFSGGLDCTLKM   82 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~h~~~v~~~~~-~-----------~~~~~~sgs~Dg~i~v   82 (327)
                      -++.|++. ...|...=.|+.++|||+..    ++.....-|...|..+.. +           +..-+.++|.|++||+
T Consensus       328 IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  328 IACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL  406 (1080)
T ss_pred             eEEEecCC-CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence            57889985 46777777899999999975    334444456655554432 1           1234579999999999


Q ss_pred             EEcCCCc---e-----------e---------ee---------------ecCCccEEEEEEeCCCCEEEEEECCCeEEEE
Q psy11885         83 FDFNTQT---E-----------T---------VI---------------GTHDQPIRAVEYSDEVNCILTGSWDTSVKMW  124 (327)
Q Consensus        83 wd~~~~~---~-----------~---------~~---------------~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lw  124 (327)
                      ||++...   .           +         .+               ......+++|+.+|+|+.|++|..-|.+|++
T Consensus       407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY  486 (1080)
T ss_pred             eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence            9987521   0           0         00               0012358999999999999999999999999


Q ss_pred             eCCCCceeeeeeCCC-cEEEEecC-----CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEE
Q psy11885        125 DPRSSRCVGNYTQPD-KVFTMSLC-----GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS  198 (327)
Q Consensus       125 dl~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (327)
                      ||..-+..-..+.+. .+.++..+     ...|++++.|+.|+++|+...=.. ......+...+..+.|..++..+-+.
T Consensus       487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l-~qtld~HSssITsvKFa~~gln~~Mi  565 (1080)
T KOG1408|consen  487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL-VQTLDGHSSSITSVKFACNGLNRKMI  565 (1080)
T ss_pred             EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch-hhhhcccccceeEEEEeecCCceEEE
Confidence            998876555555433 45555543     345899999999999998642111 11112223345666666655323222


Q ss_pred             eec-CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC---
Q psy11885        199 SIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH---  274 (327)
Q Consensus       199 ~~~-~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~---  274 (327)
                      +.+ +...+  +.......... .+..|...    .....++.++..|..++++++..|+.|+|||+++++....|+   
T Consensus       566 scGADksim--Fr~~qk~~~g~-~f~r~t~t----~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~  638 (1080)
T KOG1408|consen  566 SCGADKSIM--FRVNQKASSGR-LFPRHTQT----LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR  638 (1080)
T ss_pred             eccCchhhh--eehhccccCce-eccccccc----cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc
Confidence            222 22222  11111000000 11111110    011257889999999999999999999999999999988885   


Q ss_pred             cCCcceEEEEECCCCCEEEEEEcc
Q psy11885        275 RYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       275 ~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      +|++....+...|.|-|||+.|++
T Consensus       639 ~~eG~lIKv~lDPSgiY~atScsd  662 (1080)
T KOG1408|consen  639 DHEGDLIKVILDPSGIYLATSCSD  662 (1080)
T ss_pred             cCCCceEEEEECCCccEEEEeecC
Confidence            455668899999999999999985

>KOG0264|consensus

Probab=99.85  E-value=3.3e-20  Score=158.24  Aligned_cols=209  Identities=22%  Similarity=0.366  Sum_probs=150.1

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE--------EEEecCCCceeeEEEe--CCceEEEEecCCcEEEEE
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--------RLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFD   84 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd   84 (327)
                      +++=..++|++.....|++++.|++|.+||+.....        .....|.+.|..++|+  ....+.|.+.|+.+.+||
T Consensus       177 ~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD  256 (422)
T KOG0264|consen  177 EKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD  256 (422)
T ss_pred             cccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEE
Confidence            334567999998777899999999999999975332        1233699999999995  677888999999999999


Q ss_pred             cCCC--ce-eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCC-CceeeeeeCC-CcEEEEecCC---CeEEEEe
Q psy11885         85 FNTQ--TE-TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRS-SRCVGNYTQP-DKVFTMSLCG---EKFVVGT  155 (327)
Q Consensus        85 ~~~~--~~-~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~-~~~~~~~~~~-~~~~~~~~~~---~~~~~~~  155 (327)
                      ++++  +. .....|+++|++++|+| ++..|||||.|++|++||+|. .+++..+..+ ..++.+.+++   ..+++++
T Consensus       257 ~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg  336 (422)
T KOG0264|consen  257 TRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG  336 (422)
T ss_pred             cCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc
Confidence            9963  22 34568999999999998 456788999999999999987 4566666654 3455555443   3588899


Q ss_pred             CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeE
Q psy11885        156 AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI  235 (327)
Q Consensus       156 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  235 (327)
                      .|+.+.+||+..-..      ...          +..                ...++.  .+.+...+         |.
T Consensus       337 ~D~rl~vWDls~ig~------eq~----------~ed----------------a~dgpp--EllF~HgG---------H~  373 (422)
T KOG0264|consen  337 TDRRLNVWDLSRIGE------EQS----------PED----------------AEDGPP--ELLFIHGG---------HT  373 (422)
T ss_pred             cCCcEEEEecccccc------ccC----------hhh----------------hccCCc--ceeEEecC---------cc
Confidence            999999999864210      000          000                001111  11122222         33


Q ss_pred             EEeeEEEEecCCC-eEEEecCCCeEEEEeCCC
Q psy11885        236 YPVNAISFHQEYN-TFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       236 ~~v~~v~~spd~~-~lasgs~dg~i~iWd~~~  266 (327)
                      ..|+.++|+|... .++|.++|+.+.||+...
T Consensus       374 ~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  374 AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            4588999999765 567999999999998753

>KOG0973|consensus

Probab=99.85  E-value=1.9e-19  Score=168.23  Aligned_cols=241  Identities=16%  Similarity=0.174  Sum_probs=168.8

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC-----------C--------eEEEEecCCCceeeEEEe-CCceE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN-----------N--------NLRLKYAHSDPVLDCCFQ-DAVHS   71 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~-----------~--------~~~~~~~h~~~v~~~~~~-~~~~~   71 (327)
                      ..|.+.|+|++|+|+ +++||+||.|+.|.||....           +        ....+.+|+..|..++|+ ++.++
T Consensus        66 ~~h~~sv~CVR~S~d-G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l  144 (942)
T KOG0973|consen   66 DDHDGSVNCVRFSPD-GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL  144 (942)
T ss_pred             ccccCceeEEEECCC-CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence            457789999999995 68999999999999999762           1        112345799999999995 78899


Q ss_pred             EEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC---------cE
Q psy11885         72 FSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD---------KV  141 (327)
Q Consensus        72 ~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~---------~~  141 (327)
                      +|+|.|++|.+|+..+-.. ..+.+|.+.|..+.|.|-|++|+|-+.|++|++|++..-.+.+.+..+-         .-
T Consensus       145 vS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R  224 (942)
T KOG0973|consen  145 VSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR  224 (942)
T ss_pred             EEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee
Confidence            9999999999999887643 5688999999999999999999999999999999976655555554331         12


Q ss_pred             EEEecCCCeEEEEeC----CCeEEEEECCCCccceeeecccceeeeEEeEEeeC------C---------C--ceEEEee
Q psy11885        142 FTMSLCGEKFVVGTA----GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPN------K---------Q--GYVLSSI  200 (327)
Q Consensus       142 ~~~~~~~~~~~~~~~----d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---------~--~~~~~~~  200 (327)
                      .+++|+|++|++.-.    -.++.|.+-.+-+.-.....  +..+..+++|+|.      .         .  -.++|+.
T Consensus       225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq  302 (942)
T KOG0973|consen  225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ  302 (942)
T ss_pred             cccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence            467889999887532    22566665433221111111  1123456666652      1         1  2234555


Q ss_pred             cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCc
Q psy11885        201 EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK  267 (327)
Q Consensus       201 ~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~  267 (327)
                      |+.+.||.......   +.   -.|.+..      .+|..++|+|||..|.++|.||+|.+...+..
T Consensus       303 DrSlSVW~T~~~RP---l~---vi~~lf~------~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  303 DRSLSVWNTALPRP---LF---VIHNLFN------KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             CccEEEEecCCCCc---hh---hhhhhhc------CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            56666644422211   11   1222221      15889999999999999999999999986543

>KOG0269|consensus

Probab=99.85  E-value=2.5e-20  Score=168.20  Aligned_cols=225  Identities=20%  Similarity=0.355  Sum_probs=158.2

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----EEEEecCCC----ceeeEEEe--CCceEEEEecCCcEEEE
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LRLKYAHSD----PVLDCCFQ--DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~h~~----~v~~~~~~--~~~~~~sgs~Dg~i~vw   83 (327)
                      -+..+++|+-.++-. .++.+| -...+||.++...    +......+.    .+..+.|.  ..+++++++..|.|.+|
T Consensus        38 ~k~~~nAIs~nr~~~-qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW  115 (839)
T KOG0269|consen   38 LKAKANAISVNRDIN-QIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW  115 (839)
T ss_pred             cccccceEeecCCcc-eeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence            345678888888544 445444 3467888776543    222212111    22344563  56789999999999999


Q ss_pred             EcCC---Cce-eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeeeC-CCcE--EEEecC-CCeEEEE
Q psy11885         84 DFNT---QTE-TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKV--FTMSLC-GEKFVVG  154 (327)
Q Consensus        84 d~~~---~~~-~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~~  154 (327)
                      |++.   ++. ..+..|+..|+.++|++ +..+|+|||.||+|++||++..+...++.. ...+  ..+++. ++.|+++
T Consensus       116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~  195 (839)
T KOG0269|consen  116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI  195 (839)
T ss_pred             ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence            9986   222 35678999999999986 678999999999999999999887766543 2222  334443 6789999


Q ss_pred             eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeee
Q psy11885        155 TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEK  234 (327)
Q Consensus       155 ~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~  234 (327)
                      .++|.+++||+|..+....                                           +    +..         |
T Consensus       196 ~dsG~lqlWDlRqp~r~~~-------------------------------------------k----~~A---------H  219 (839)
T KOG0269|consen  196 HDSGYLQLWDLRQPDRCEK-------------------------------------------K----LTA---------H  219 (839)
T ss_pred             cCCceEEEeeccCchhHHH-------------------------------------------H----hhc---------c
Confidence            9999999999996542100                                           0    011         2


Q ss_pred             EEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee--eeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        235 IYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR--LCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       235 ~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~--~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      .++|.|+.|||++.+|||||.|+.|+|||+.+++.  +.++. --.+|.+|+|-|+.++..+.|+
T Consensus       220 ~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcs  283 (839)
T KOG0269|consen  220 NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCS  283 (839)
T ss_pred             cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhh
Confidence            34789999999999999999999999999875442  33332 2358999999999876655554

>KOG0642|consensus

Probab=99.84  E-value=2.2e-20  Score=163.23  Aligned_cols=246  Identities=20%  Similarity=0.322  Sum_probs=169.1

Q ss_pred             eeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC------Ce---EEEEecCCCceeeEEEe-CCceEEEEec
Q psy11885          7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN------NN---LRLKYAHSDPVLDCCFQ-DAVHSFSGGL   76 (327)
Q Consensus         7 ~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~------~~---~~~~~~h~~~v~~~~~~-~~~~~~sgs~   76 (327)
                      .|++.+ |.+.|++++|+|. ..-|++++.||++.+|++..      ..   +..+.+|.++|.|++++ .+.+++|||.
T Consensus       287 k~tl~s-~~d~ir~l~~~~s-ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~  364 (577)
T KOG0642|consen  287 KFTLRS-HDDCIRALAFHPS-EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI  364 (577)
T ss_pred             eeeeec-chhhhhhhhcCCC-CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence            344444 6789999999995 46899999999999999932      11   23456899999999995 7889999999


Q ss_pred             CCcEEEEEcCCCc-----------eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC---CCcEE
Q psy11885         77 DCTLKMFDFNTQT-----------ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ---PDKVF  142 (327)
Q Consensus        77 Dg~i~vwd~~~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~---~~~~~  142 (327)
                      ||+|+.|++..+.           ...+.+|++.|+.+++++....|++++.||++|+|+...... .++..   .....
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            9999999765321           124678999999999999999999999999999999865443 22222   22223


Q ss_pred             EEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeee
Q psy11885        143 TMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF  222 (327)
Q Consensus       143 ~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  222 (327)
                      .++......+-...+...+.+++..++.+..            +.+++        +.        .....  .      
T Consensus       444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~------------~~~~~--------s~--------~~~~~--~------  487 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSD------------LLIFE--------SS--------ASPGP--R------  487 (577)
T ss_pred             eEeeccchhHhhhhhcccccccchhhhhhhh------------eeecc--------cc--------CCCcc--c------
Confidence            3333222222112222333333322211100            00000        00        00000  0      


Q ss_pred             eeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccccc
Q psy11885        223 KCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYEL  302 (327)
Q Consensus       223 ~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~  302 (327)
                                 ....++-+..+|...+.+++-+|+.|+++|..+++.+.....|...++++++-|+|-+|++++.+.-..
T Consensus       488 -----------~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~  556 (577)
T KOG0642|consen  488 -----------RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVR  556 (577)
T ss_pred             -----------ccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceee
Confidence                       001256678899999999999999999999999999888888888999999999999999998654443

>KOG0270|consensus

Probab=99.84  E-value=1.5e-19  Score=153.83  Aligned_cols=231  Identities=19%  Similarity=0.286  Sum_probs=157.8

Q ss_pred             CcEEEEEECCCcEEEEECCCCe--------------EE--------EEecCCCceeeEEEe--CCceEEEEecCCcEEEE
Q psy11885         28 NQFLLASSWDCNVSLYDITNNN--------------LR--------LKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        28 ~~~l~s~~~d~~i~iwd~~~~~--------------~~--------~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vw   83 (327)
                      +.|+|.|.+|..|.|||+.-..              ..        ...+|+++|..+.|.  ..+.|+|||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            4699999999999999974211              00        012488888888874  56788999999999999


Q ss_pred             EcCCCceee-eecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCc---eeeeeeCCCcEEEEecC-CCeEEEEeCC
Q psy11885         84 DFNTQTETV-IGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSR---CVGNYTQPDKVFTMSLC-GEKFVVGTAG  157 (327)
Q Consensus        84 d~~~~~~~~-~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~d  157 (327)
                      |+.++++.. +..|+.+|.++.|+| .+..|++|++|++|++.|+|.-.   ..+.+........+.+. ...+++++.|
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd  351 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD  351 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence            999998865 456899999999998 56889999999999999999522   22233333344555543 5568889999


Q ss_pred             CeEEEEECCCCcc-ceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeE
Q psy11885        158 RKVCIWDLRNMGY-IMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI  235 (327)
Q Consensus       158 ~~v~iwD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  235 (327)
                      |+|+-+|+|+.+. +.....+.-  .+.++.++.... .+++++.++.+.+|.++.......     ..|.+.   +   
T Consensus       352 G~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v-----~~~~~~---~---  418 (463)
T KOG0270|consen  352 GTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV-----KEHSFK---L---  418 (463)
T ss_pred             ceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCCCCccc-----cccccc---c---
Confidence            9999999998753 322222222  335566666544 445666777777766654332111     112111   1   


Q ss_pred             EEeeEEEEecCC-CeEEEecCCCeEEEEeCCCceeee
Q psy11885        236 YPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLC  271 (327)
Q Consensus       236 ~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~~~~  271 (327)
                      ....|.++.|+- -.+|.|+..+.++|||+.+...+.
T Consensus       419 ~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  419 GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            124466666654 357888888999999988766543

>KOG2048|consensus

Probab=99.84  E-value=4e-18  Score=152.08  Aligned_cols=236  Identities=19%  Similarity=0.259  Sum_probs=177.3

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE--EEEecC-CCceeeEEEeCCceEEEEecCCcEEEEEcCCCcee-
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--RLKYAH-SDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET-   91 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~h-~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~-   91 (327)
                      .+|+++||+.+++ .||++=.||.|.+|++..+=.  ....++ +..|-+++|.++..|+|.+.+|+|.-||+.+.+.. 
T Consensus        26 s~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~  104 (691)
T KOG2048|consen   26 SEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY  104 (691)
T ss_pred             cceEEEEEeccCC-ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeE
Confidence            5899999999764 588888999999999988653  223333 45688999999999999999999999999887654 


Q ss_pred             eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeee---eCCCcEEEEecC--CCeEEEEeCCCeEEEEECC
Q psy11885         92 VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY---TQPDKVFTMSLC--GEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        92 ~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~d~~v~iwD~~  166 (327)
                      .+..-.++|++++.+|.+..++.|..||-+..++...++....-   .+...+++++++  +..++.|+.||.|++||..
T Consensus       105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK  184 (691)
T ss_pred             EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence            35556679999999999999999999997777777666544322   134566666655  5568999999999999998


Q ss_pred             CCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC
Q psy11885        167 NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE  246 (327)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd  246 (327)
                      .+..++..                      ...         ++.-.. ..             .    .-|+++.|- .
T Consensus       185 ~~~t~~~~----------------------~~~---------~d~l~k-~~-------------~----~iVWSv~~L-r  214 (691)
T KOG2048|consen  185 SGQTLHII----------------------TMQ---------LDRLSK-RE-------------P----TIVWSVLFL-R  214 (691)
T ss_pred             CCceEEEe----------------------eec---------cccccc-CC-------------c----eEEEEEEEe-e
Confidence            65422100                      000         000000 00             0    024556665 3


Q ss_pred             CCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccccc
Q psy11885        247 YNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYEL  302 (327)
Q Consensus       247 ~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~  302 (327)
                      ...||+|..-|+|++||...+..++.+..|.+.|.+|+-++++.++.+++-+...+
T Consensus       215 d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii  270 (691)
T KOG2048|consen  215 DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKII  270 (691)
T ss_pred             cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceE
Confidence            35899999999999999999999999999999999999999999999998765443

>KOG0322|consensus

Probab=99.84  E-value=1.2e-19  Score=145.07  Aligned_cols=283  Identities=16%  Similarity=0.166  Sum_probs=176.8

Q ss_pred             CCCCCceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEeCCceEEEEecCC
Q psy11885          1 MVDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQDAVHSFSGGLDC   78 (327)
Q Consensus         1 ~~~~~~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~~~~~~~sgs~Dg   78 (327)
                      |+++++.|.+. +|.+.|+++.|-.+  .+|.+|..-|.|.+|++.+.+....+  .|...|+.+..-++..+.+-+.|.
T Consensus         1 ~~pPdP~fvLR-p~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~   77 (323)
T KOG0322|consen    1 MVPPDPFFVLR-PHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDP   77 (323)
T ss_pred             CCCCCCeeEec-cccchheehhhccc--hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCc
Confidence            88999999999 67789999999974  45999999999999999988744333  456677777665668889999999


Q ss_pred             cEEEEEcCCCceeeeecCCccEEEEEEeCC-----CC----EEEEEECCCe-EEEEeCCCCceeeee-------eCCCcE
Q psy11885         79 TLKMFDFNTQTETVIGTHDQPIRAVEYSDE-----VN----CILTGSWDTS-VKMWDPRSSRCVGNY-------TQPDKV  141 (327)
Q Consensus        79 ~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~-----~~----~l~sgs~d~~-i~lwdl~~~~~~~~~-------~~~~~~  141 (327)
                      .+.+|++.....  +..|.-.++++.|.+-     ++    .++.=+.... +.+=|.  ++..+..       ...+.+
T Consensus        78 ~L~lw~ia~s~~--i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~--g~~tqv~i~dd~~~~Klgsv  153 (323)
T KOG0322|consen   78 LLILWTIAYSAF--ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG--GDTTQVQIADDSERSKLGSV  153 (323)
T ss_pred             eEEEEEccCcce--EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc--CccceeEccCchhccccCce
Confidence            999999976432  2234444555554431     11    1111000000 111111  1111111       112234


Q ss_pred             EEEec---CCC--eEEEEeCCCeEEEEECCCCccceeeecc--------cceeeeEEeEEeeCCCceEEEeecCeEEEEE
Q psy11885        142 FTMSL---CGE--KFVVGTAGRKVCIWDLRNMGYIMQRRES--------SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEY  208 (327)
Q Consensus       142 ~~~~~---~~~--~~~~~~~d~~v~iwD~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  208 (327)
                      +++..   ++.  .+++|.++|.|-+||+.+...+.+....        .+..+...+.+.+....-+.++.+.....+.
T Consensus       154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S  233 (323)
T KOG0322|consen  154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS  233 (323)
T ss_pred             eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence            44442   233  3677889999999999876332221110        0111122333333323334444555555555


Q ss_pred             ccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCC
Q psy11885        209 LDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  288 (327)
Q Consensus       209 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspd  288 (327)
                      ++...........   +..+.      ..++.+...||++.|||++.|+.||||+.++.+.+..++-|...|+++|||||
T Consensus       234 l~~s~gslq~~~e---~~lkn------pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd  304 (323)
T KOG0322|consen  234 LNHSTGSLQIRKE---ITLKN------PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD  304 (323)
T ss_pred             eccccCcccccce---EEecC------CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence            4433211111111   11111      13667888999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEccc
Q psy11885        289 GNVLAIACSYN  299 (327)
Q Consensus       289 g~~la~~~~~~  299 (327)
                      ...+|+|+.+.
T Consensus       305 ~~lmAaaskD~  315 (323)
T KOG0322|consen  305 CELMAAASKDA  315 (323)
T ss_pred             CchhhhccCCc
Confidence            99999998654

>KOG1274|consensus

Probab=99.83  E-value=2.6e-18  Score=157.99  Aligned_cols=245  Identities=17%  Similarity=0.196  Sum_probs=186.5

Q ss_pred             EEEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCC--ceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCC
Q psy11885         51 RLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQ--TETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR  127 (327)
Q Consensus        51 ~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~  127 (327)
                      ...+.|...-+.++| +++..+++++.||.||+|+....  .+..+..+...|.+++.  .++.|++|+.+++|.+|...
T Consensus         7 klRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen    7 KLRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             cchhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCC
Confidence            445788888889999 68899999999999999987654  23344447777877764  44689999999999999987


Q ss_pred             CCc---eeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeE
Q psy11885        128 SSR---CVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRA  204 (327)
Q Consensus       128 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (327)
                      +++   .+..+..+....++.-+|+.++.|+.|-.|++-++.........+  .+..+..++.++|.+..+++++.+|.+
T Consensus        85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr--gh~apVl~l~~~p~~~fLAvss~dG~v  162 (933)
T KOG1274|consen   85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR--GHDAPVLQLSYDPKGNFLAVSSCDGKV  162 (933)
T ss_pred             CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec--ccCCceeeeeEcCCCCEEEEEecCceE
Confidence            765   456677788888888899999999999999999887654333322  233456788999999999999999999


Q ss_pred             EEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc--CCcceEE
Q psy11885        205 AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR--YDTGITS  282 (327)
Q Consensus       205 ~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~--~~~~v~~  282 (327)
                      .+|.+..+.....+.-..+..     .......+..++|||++..||..+.|++|++|+..+.+....+..  +++.+..
T Consensus       163 ~iw~~~~~~~~~tl~~v~k~n-----~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~  237 (933)
T KOG1274|consen  163 QIWDLQDGILSKTLTGVDKDN-----EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD  237 (933)
T ss_pred             EEEEcccchhhhhcccCCccc-----cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence            887766543322221111111     111123577899999999999999999999999988887776642  3445899


Q ss_pred             EEECCCCCEEEEEEccccccCC
Q psy11885        283 LCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       283 l~fspdg~~la~~~~~~~~~~~  304 (327)
                      ++|||.|+|||+++-+++.+.+
T Consensus       238 ~~wsPnG~YiAAs~~~g~I~vW  259 (933)
T KOG1274|consen  238 LQWSPNGKYIAASTLDGQILVW  259 (933)
T ss_pred             EEEcCCCcEEeeeccCCcEEEE
Confidence            9999999999999887777666

>KOG0267|consensus

Probab=99.83  E-value=7.2e-21  Score=170.47  Aligned_cols=188  Identities=19%  Similarity=0.295  Sum_probs=148.0

Q ss_pred             ceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEE
Q psy11885          6 TEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus         6 ~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vw   83 (327)
                      ++++ ...|+.+|.++.|++. ..+|++|+.+|+|++||++..+ .+.+.+|..++.++.|+ -+.+.++|+.|+.+++|
T Consensus        62 ~i~S-~~~hespIeSl~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iw  139 (825)
T KOG0267|consen   62 AITS-LTGHESPIESLTFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIW  139 (825)
T ss_pred             hhhe-eeccCCcceeeecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceeh
Confidence            3444 3458899999999994 5789999999999999999887 46667899999999995 56677899999999999


Q ss_pred             EcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-CCcEEEE--ecCCCeEEEEeCCCe
Q psy11885         84 DFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKVFTM--SLCGEKFVVGTAGRK  159 (327)
Q Consensus        84 d~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~d~~  159 (327)
                      |+....+ ....+|...|..+.|+|+|.++++|+.|.++++||+..|+...+|.. ...+..+  ++..-.++.|+.|++
T Consensus       140 D~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t  219 (825)
T KOG0267|consen  140 DIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT  219 (825)
T ss_pred             hhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence            9986554 45667999999999999999999999999999999999999888873 3344443  444445788999999


Q ss_pred             EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEE
Q psy11885        160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVL  197 (327)
Q Consensus       160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (327)
                      |++||+++.+.+......  ....++.+|+++...+..
T Consensus       220 v~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~  255 (825)
T KOG0267|consen  220 VRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLS  255 (825)
T ss_pred             eeeeccceeEEeeccCCc--cCCceeeeecCCceeeec
Confidence            999999987654332222  234567777777544333

>KOG0321|consensus

Probab=99.83  E-value=7e-19  Score=155.86  Aligned_cols=278  Identities=14%  Similarity=0.171  Sum_probs=179.3

Q ss_pred             eEEEEecC--CCcEEEEEECCCcEEEEECCCCe-------EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         19 TAVKFAPN--SNQFLLASSWDCNVSLYDITNNN-------LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        19 ~~i~fs~~--~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      .+..|++.  ..++|+.+..||.|.++|....+       +.....|..+|..+.|. ...++++++.|.++|+||+++.
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            45778764  34689999999999999987543       22334699999999995 5567889999999999999987


Q ss_pred             cee---eeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCce--e-----ee---ee-----------------C
Q psy11885         89 TET---VIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRC--V-----GN---YT-----------------Q  137 (327)
Q Consensus        89 ~~~---~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~--~-----~~---~~-----------------~  137 (327)
                      ...   ...+|...|.++||.+. ...|++|+.||.|.|||++....  .     +.   +.                 .
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            642   46789999999999985 46788999999999999975431  0     00   00                 0


Q ss_pred             C-CcEE----E-EecCCCeEEEEeC-CCeEEEEECCCCccceeeecc---cceee------eEEeEEeeCCCceEEEeec
Q psy11885        138 P-DKVF----T-MSLCGEKFVVGTA-GRKVCIWDLRNMGYIMQRRES---SLKFQ------TRCIKCFPNKQGYVLSSIE  201 (327)
Q Consensus       138 ~-~~~~----~-~~~~~~~~~~~~~-d~~v~iwD~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~  201 (327)
                      + ..+.    . +..+...+++++. |+.|++||+|...........   ..+..      ..++.....+..+.+.+.|
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence            0 1111    1 2234667888877 999999999975433211110   01100      1222222334556666676


Q ss_pred             CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee-eeecCcCCcce
Q psy11885        202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR-LCQFHRYDTGI  280 (327)
Q Consensus       202 ~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~-~~~~~~~~~~v  280 (327)
                      +.+..+.+-  .........+..+...      .+.+. -..+||+.++++|+.|..+++|.+.+.+. +..+.+|...|
T Consensus       293 ~sIy~ynm~--s~s~sP~~~~sg~~~~------sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV  363 (720)
T KOG0321|consen  293 NSIYFYNMR--SLSISPVAEFSGKLNS------SFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV  363 (720)
T ss_pred             CcEEEEecc--ccCcCchhhccCcccc------eeeee-eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE
Confidence            665554432  2222222222222211      11222 35689999999999999999999887765 34457888889


Q ss_pred             EEEEECCCCCEEEEEEccccccCCC
Q psy11885        281 TSLCFSYDGNVLAIACSYNYELETP  305 (327)
Q Consensus       281 ~~l~fspdg~~la~~~~~~~~~~~~  305 (327)
                      ++++|.|.--.=+++|+++..+..|
T Consensus       364 t~V~w~pS~~t~v~TcSdD~~~kiW  388 (720)
T KOG0321|consen  364 TTVRWLPSATTPVATCSDDFRVKIW  388 (720)
T ss_pred             EEEeeccccCCCceeeccCcceEEE
Confidence            9999998543333344655544444

>KOG2445|consensus

Probab=99.83  E-value=4.8e-18  Score=138.65  Aligned_cols=254  Identities=15%  Similarity=0.193  Sum_probs=160.3

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----E-EEEecCCCceeeEEEe---CCceEEEEecCCcEEE
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----L-RLKYAHSDPVLDCCFQ---DAVHSFSGGLDCTLKM   82 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~-~~~~~h~~~v~~~~~~---~~~~~~sgs~Dg~i~v   82 (327)
                      -+.|++=|+++.|.+. ++.+|+++.|++|+|||.....    + .....|.+.|..+.|.   -|..++++|.|+++++
T Consensus         9 ~s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             ccCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            3456678999999995 5789999999999999975443    2 2234699999999993   4778899999999999


Q ss_pred             EEcCCCc----------eeeeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCCceeee--eeCCCcEEEEecCC
Q psy11885         83 FDFNTQT----------ETVIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSSRCVGN--YTQPDKVFTMSLCG  148 (327)
Q Consensus        83 wd~~~~~----------~~~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~~~~~~--~~~~~~~~~~~~~~  148 (327)
                      |.-....          ...+..-...|++++|.|.  |-.+++++.||++|+|+.-.--.+..  +.+.-..+ ..+.+
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~-~~pp~  166 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV-IDPPG  166 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc-cCCcc
Confidence            9742111          1123445678999999984  67889999999999998643221111  11110000 00111


Q ss_pred             CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeC---CCceEEEeec-----CeEEEEEccCCccccccee
Q psy11885        149 EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPN---KQGYVLSSIE-----GRAAVEYLDTGPEMQKMKY  220 (327)
Q Consensus       149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~  220 (327)
                      +.                             .....|+.+++.   .+.+++++.+     +...|+-.+  ...++.  
T Consensus       167 ~~-----------------------------~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~--e~~rKw--  213 (361)
T KOG2445|consen  167 KN-----------------------------KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN--ENGRKW--  213 (361)
T ss_pred             cc-----------------------------cCcceEEeeccccccCceEEEEcccCCccccceEEEEec--CCccee--
Confidence            10                             001122222221   1344555443     123332222  211111  


Q ss_pred             eeeeeeeccCCeeeEEEeeEEEEecC----CCeEEEecCCCeEEEEeCCCc--------------------eeeeecCcC
Q psy11885        221 AFKCHRIKEDGIEKIYPVNAISFHQE----YNTFATGGSDGYVNIWDGFNK--------------------KRLCQFHRY  276 (327)
Q Consensus       221 ~~~~h~~~~~~~~~~~~v~~v~~spd----~~~lasgs~dg~i~iWd~~~~--------------------~~~~~~~~~  276 (327)
                          +...+ -..+..||..++|.|.    ...||+|+.|| |+||.+...                    +.+..+..|
T Consensus       214 ----~kva~-L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H  287 (361)
T KOG2445|consen  214 ----LKVAE-LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH  287 (361)
T ss_pred             ----eeehh-cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence                11110 0134458999999995    46799999999 999987521                    123345678


Q ss_pred             CcceEEEEECCCCCEEEEEEccccccCCC
Q psy11885        277 DTGITSLCFSYDGNVLAIACSYNYELETP  305 (327)
Q Consensus       277 ~~~v~~l~fspdg~~la~~~~~~~~~~~~  305 (327)
                      ...|+.+.|+-.|..|++++.++-.+.+.
T Consensus       288 ~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  288 NGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             CCceEEEEEeeeeeEEeecCCCceeeehh
Confidence            88999999999999999988776665553

>KOG4283|consensus

Probab=99.83  E-value=1.3e-18  Score=141.20  Aligned_cols=237  Identities=17%  Similarity=0.344  Sum_probs=163.1

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeC----CceEEEEecCCcEEEEEcC
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQD----AVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~----~~~~~sgs~Dg~i~vwd~~   86 (327)
                      ...|+-.|..+.|-|-+...+.+++.|++++|||.++-+....+.-.+.|.+-++++    --.+++|..|-.|++=|+.
T Consensus        97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen   97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            456778899999999777788999999999999999988766666566676666642    2356688888999999999


Q ss_pred             CCce-eeeecCCccEEEEEEeCCCCE-EEEEECCCeEEEEeCCCC-ceeeeeeCCC---------------cE--EEEec
Q psy11885         87 TQTE-TVIGTHDQPIRAVEYSDEVNC-ILTGSWDTSVKMWDPRSS-RCVGNYTQPD---------------KV--FTMSL  146 (327)
Q Consensus        87 ~~~~-~~~~~h~~~V~~l~~~~~~~~-l~sgs~d~~i~lwdl~~~-~~~~~~~~~~---------------~~--~~~~~  146 (327)
                      ++.. ..+.+|.+.|.++.|+|...+ |++|+.||.||+||++.. .|+..+.+++               ++  .++..
T Consensus       177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS  256 (397)
T KOG4283|consen  177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS  256 (397)
T ss_pred             CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence            9876 578999999999999998876 568999999999999875 4655543321               22  23445


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCcccee-------eecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccce
Q psy11885        147 CGEKFVVGTAGRKVCIWDLRNMGYIMQ-------RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK  219 (327)
Q Consensus       147 ~~~~~~~~~~d~~v~iwD~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  219 (327)
                      ++..+++++.|..+++|++.++.....       .......+...    ..+...++..-.++...+.....+.....  
T Consensus       257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~----~~~s~vfv~~p~~~~lall~~~sgs~ir~--  330 (397)
T KOG4283|consen  257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ----SMDSDVFVLFPNDGSLALLNLLEGSFVRR--  330 (397)
T ss_pred             cchhhhhccCccceEEeecccCcccccccccccccccccceEEEe----ecccceEEEEecCCeEEEEEccCceEEEe--
Confidence            577899999999999999976643211       11111111111    11112222222333333322222221111  


Q ss_pred             eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeC
Q psy11885        220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~  264 (327)
                        ++.|         ...++|.++.|+-+...+|+.|+.|..|..
T Consensus       331 --l~~h---------~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  331 --LSTH---------LKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             --eecc---------cceeeEEeecCchhhhhccccCCccccccc
Confidence              1112         125889999999999999999999999975

>KOG1009|consensus

Probab=99.83  E-value=8.4e-19  Score=147.81  Aligned_cols=292  Identities=17%  Similarity=0.233  Sum_probs=180.8

Q ss_pred             CceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-------EE---EEecCCCceeeEEE-eCCceEEE
Q psy11885          5 KTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-------LR---LKYAHSDPVLDCCF-QDAVHSFS   73 (327)
Q Consensus         5 ~~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-------~~---~~~~h~~~v~~~~~-~~~~~~~s   73 (327)
                      ..+-+++.  ..+|..+.|.+++...+++||.|..|++|.++.++       +.   .+..|+.+|+.++| +++..++|
T Consensus         5 ~~ei~wH~--~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS   82 (434)
T KOG1009|consen    5 PIEISWHD--HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLAS   82 (434)
T ss_pred             eeEEEecC--CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeee
Confidence            33444552  25899999999765589999999999999986422       11   12358899999999 48899999


Q ss_pred             EecCCcEEEEEcC--------C-----Cc----eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee
Q psy11885         74 GGLDCTLKMFDFN--------T-----QT----ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT  136 (327)
Q Consensus        74 gs~Dg~i~vwd~~--------~-----~~----~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~  136 (327)
                      |+.+|.|.+|...        +     .+    ...+.+|...|..++|+++++.+++++.|+.+++||++.|..+..+.
T Consensus        83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~  162 (434)
T KOG1009|consen   83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD  162 (434)
T ss_pred             cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc
Confidence            9999999999765        2     11    12456799999999999999999999999999999999999888776


Q ss_pred             CCC---cEEEEecCCCeEEEEeCCCeEEEEECCCCccceeee---------------------cccceeeeEEeEEeeCC
Q psy11885        137 QPD---KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRR---------------------ESSLKFQTRCIKCFPNK  192 (327)
Q Consensus       137 ~~~---~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~  192 (327)
                      .+.   ...++++.++.+++-+.|+..+.+.+...+.+....                     ...++..-+..++.|++
T Consensus       163 dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG  242 (434)
T KOG1009|consen  163 DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG  242 (434)
T ss_pred             ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence            543   345666777888888888877776664322111100                     00111112334455665


Q ss_pred             CceEEEee----cCeE--EEEEccCCcccccceeeeeeeeec--cCCeee----EEEeeEE--EE-ecCCCeEEEecCCC
Q psy11885        193 QGYVLSSI----EGRA--AVEYLDTGPEMQKMKYAFKCHRIK--EDGIEK----IYPVNAI--SF-HQEYNTFATGGSDG  257 (327)
Q Consensus       193 ~~~~~~~~----~~~~--~i~~~~~~~~~~~~~~~~~~h~~~--~~~~~~----~~~v~~v--~~-spd~~~lasgs~dg  257 (327)
                      ..+++.+.    .+..  ...+.-++....+....+.+....  .....+    ..|+...  -| -|-+..+|.+.. .
T Consensus       243 ~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~  321 (434)
T KOG1009|consen  243 SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-N  321 (434)
T ss_pred             cEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-c
Confidence            55443211    1111  111211221111111100000000  000000    0011111  11 133445666654 6


Q ss_pred             eEEEEeCCCceeeeecC-cCCcceEEEEECCCCCEEEEEEccc
Q psy11885        258 YVNIWDGFNKKRLCQFH-RYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       258 ~i~iWd~~~~~~~~~~~-~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      .|+|||.++.+++.... -|-.+++.++||+||.+|+.++-++
T Consensus       322 svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  322 SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG  364 (434)
T ss_pred             eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence            79999998877765543 2445899999999999999997653

>KOG1539|consensus

Probab=99.82  E-value=3.2e-17  Score=149.44  Aligned_cols=286  Identities=16%  Similarity=0.209  Sum_probs=193.6

Q ss_pred             eeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC-CceeeEEEe-CCc-eEEEEecCCcEEEE
Q psy11885          7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS-DPVLDCCFQ-DAV-HSFSGGLDCTLKMF   83 (327)
Q Consensus         7 ~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~-~~v~~~~~~-~~~-~~~sgs~Dg~i~vw   83 (327)
                      ++.+.. +.++||++.=+|. -..+|.|-.+|+|.++|+..++....+.|. ++|+++.|- +|. .+++|+..|.+-+|
T Consensus       195 v~~f~~-~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~w  272 (910)
T KOG1539|consen  195 VYTFQE-FFSRITAIEQSPA-LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFW  272 (910)
T ss_pred             EEEecc-cccceeEeccCCc-ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEE
Confidence            444444 4489999999995 358899999999999999999988888886 899999995 555 56677778999999


Q ss_pred             EcCCCcee--eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce-----------------eeeee--------
Q psy11885         84 DFNTQTET--VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC-----------------VGNYT--------  136 (327)
Q Consensus        84 d~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~-----------------~~~~~--------  136 (327)
                      |++..+..  ....|.+.|..+.|.+....+++++.|+.+++|=..++.-                 +..+.        
T Consensus       273 DLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils  352 (910)
T KOG1539|consen  273 DLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS  352 (910)
T ss_pred             EcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe
Confidence            99987653  3447888899999999888999999999998874332211                 11000        


Q ss_pred             ----------------------C--------C-----------CcEEEEecCC-------CeEEEEeCCCeEEEEECCCC
Q psy11885        137 ----------------------Q--------P-----------DKVFTMSLCG-------EKFVVGTAGRKVCIWDLRNM  168 (327)
Q Consensus       137 ----------------------~--------~-----------~~~~~~~~~~-------~~~~~~~~d~~v~iwD~~~~  168 (327)
                                            +        +           .++..+++.+       +.++.--.+...+.|++++.
T Consensus       353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~  432 (910)
T KOG1539|consen  353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK  432 (910)
T ss_pred             cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence                                  0        0           0111222211       11222233456777777654


Q ss_pred             ccceeeecc----cceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        169 GYIMQRRES----SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       169 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      ..-.+...+    .......+++..+.++..++|...|.+.++...++-....    +.      +...|-.+|..++..
T Consensus       433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s----f~------~~~ah~~~V~gla~D  502 (910)
T KOG1539|consen  433 TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS----FG------DSPAHKGEVTGLAVD  502 (910)
T ss_pred             ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc----cc------cCccccCceeEEEec
Confidence            321111111    1223345666677777778888888888766654422111    10      111233468888888


Q ss_pred             cCCCeEEEecCCCeEEEEeCCCce-----------------------------------------eeeecCcCCcceEEE
Q psy11885        245 QEYNTFATGGSDGYVNIWDGFNKK-----------------------------------------RLCQFHRYDTGITSL  283 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~~~~-----------------------------------------~~~~~~~~~~~v~~l  283 (327)
                      .-++.+++++.+|-+++||..++.                                         .+..+.+|...|+++
T Consensus       503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~  582 (910)
T KOG1539|consen  503 GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM  582 (910)
T ss_pred             CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee
Confidence            888889999999999999865433                                         122345688899999


Q ss_pred             EECCCCCEEEEEEccccccCC
Q psy11885        284 CFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       284 ~fspdg~~la~~~~~~~~~~~  304 (327)
                      +|||||++|++++.+.....+
T Consensus       583 ~FS~DgrWlisasmD~tIr~w  603 (910)
T KOG1539|consen  583 TFSPDGRWLISASMDSTIRTW  603 (910)
T ss_pred             EeCCCCcEEEEeecCCcEEEE
Confidence            999999999999988777666

>KOG0639|consensus

Probab=99.82  E-value=3.3e-19  Score=154.01  Aligned_cols=233  Identities=17%  Similarity=0.231  Sum_probs=169.2

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC---CceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS---DPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~---~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      .++-|+++...|+ ++.|++||+-.++.|||+.....+.+...+   -++..++.+ +.+.++++..||.|+|||+....
T Consensus       464 rdnyiRSckL~pd-grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~  542 (705)
T KOG0639|consen  464 RDNYIRSCKLLPD-GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT  542 (705)
T ss_pred             cccceeeeEecCC-CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence            5578999999996 578999999999999999877655444322   234455554 77888999999999999998765


Q ss_pred             e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEe--cCCCeEEEEeCCCeEEEEECC
Q psy11885         90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMS--LCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~v~iwD~~  166 (327)
                      . ..+++|.+.+.+|.+++||..|-||+-|++||.||+++++.++.+.....++++.  +.++.+++|.+++.|.|....
T Consensus       543 ~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s  622 (705)
T KOG0639|consen  543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS  622 (705)
T ss_pred             eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence            5 3578999999999999999999999999999999999998777766666676655  457789999999999888776


Q ss_pred             CCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC
Q psy11885        167 NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE  246 (327)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd  246 (327)
                      ..+...   .+....-...+.|.+.++.++....++-...|..--+...         ...++     .++|.++..|-|
T Consensus       623 kp~kyq---lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi---------FqskE-----~SsVlsCDIS~d  685 (705)
T KOG0639|consen  623 KPEKYQ---LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI---------FQSKE-----SSSVLSCDISFD  685 (705)
T ss_pred             Ccccee---ecccccEEEEEEecccCceeeecCchhhhhhccCccccce---------eeccc-----cCcceeeeeccC
Confidence            443211   1111122345677777776666555544333222111110         01111     246889999999


Q ss_pred             CCeEEEecCCCeEEEEeC
Q psy11885        247 YNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       247 ~~~lasgs~dg~i~iWd~  264 (327)
                      .++++|||.|....+|.+
T Consensus       686 dkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  686 DKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ceEEEecCCCcceEEEEE
Confidence            999999999988888753

>KOG1408|consensus

Probab=99.81  E-value=1.5e-18  Score=155.59  Aligned_cols=229  Identities=17%  Similarity=0.214  Sum_probs=175.7

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe----CCceEEEEecCCcEEEEEcCCCc
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ----DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~----~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..+|++++.+|+ ++.||+|..-|+++||++..-+. ....+|...|.|+.|+    ....++|+|.|.-|.++|+..+.
T Consensus       459 r~G~R~~~vSp~-gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  459 RFGFRALAVSPD-GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             ccceEEEEECCC-cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence            468999999995 68999999999999999987664 4455799999999985    35688899999999999997765


Q ss_pred             e--eeeecCCccEEEEEEeCCC--CEEEEEECCCeEEEEeCCC----Cceeeeee---CCCcEE--EEecCCCeEEEEeC
Q psy11885         90 E--TVIGTHDQPIRAVEYSDEV--NCILTGSWDTSVKMWDPRS----SRCVGNYT---QPDKVF--TMSLCGEKFVVGTA  156 (327)
Q Consensus        90 ~--~~~~~h~~~V~~l~~~~~~--~~l~sgs~d~~i~lwdl~~----~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~  156 (327)
                      .  ..+.+|...|+++.|.-.|  ...++++.|+.| +|+...    +.......   .+...+  .+.+..+.+++++.
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ  616 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ  616 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence            3  4577899999999998776  678999999876 455443    22222111   122344  34566778999999


Q ss_pred             CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        157 GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       157 d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      |+.|||||+.+++....               +..       +-            .           |.         .
T Consensus       617 Drnirif~i~sgKq~k~---------------FKg-------s~------------~-----------~e---------G  642 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKS---------------FKG-------SR------------D-----------HE---------G  642 (1080)
T ss_pred             ccceEEEeccccceeee---------------ecc-------cc------------c-----------CC---------C
Confidence            99999999987653210               000       00            0           00         0


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      ..--+...|.|-++|+...|.++-++|..+++.+.+..+|...|+.+.|++|.+.|++.++++
T Consensus       643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg  705 (1080)
T KOG1408|consen  643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG  705 (1080)
T ss_pred             ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCc
Confidence            122356779999999999999999999999999999999999999999999999999998654

>KOG2096|consensus

Probab=99.81  E-value=6.1e-18  Score=138.73  Aligned_cols=245  Identities=16%  Similarity=0.194  Sum_probs=155.3

Q ss_pred             EEEEECCCCeEE------EEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCc--e-eee--ecCCccEEEEEEeC
Q psy11885         40 VSLYDITNNNLR------LKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQT--E-TVI--GTHDQPIRAVEYSD  107 (327)
Q Consensus        40 i~iwd~~~~~~~------~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~--~-~~~--~~h~~~V~~l~~~~  107 (327)
                      ++-|+..+....      .+.+|.+.|++++| ++|..++|++.|++||+|+++.-.  . ..+  .-.-+-.+.+.|+|
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap  142 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP  142 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence            455665544321      23479999999999 599999999999999999986421  1 111  11112357789999


Q ss_pred             CCCEE-EEEECCCeEEEEeCCCCc---e-eee-------eeC--CCcE--EEEecCCCeEEEEeCCCeEEEEECCCCccc
Q psy11885        108 EVNCI-LTGSWDTSVKMWDPRSSR---C-VGN-------YTQ--PDKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus       108 ~~~~l-~sgs~d~~i~lwdl~~~~---~-~~~-------~~~--~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      |-+-+ ++.....++++|.+...+   . ...       +..  ...+  +.++-.+..+++++.|.+|.+||++.+ ..
T Consensus       143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq-~L  221 (420)
T KOG2096|consen  143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ-LL  221 (420)
T ss_pred             CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCc-ee
Confidence            87654 556677899999874322   1 110       111  1122  334445678999999999999999843 22


Q ss_pred             eeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccC--Ccccccce--eeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885        172 MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT--GPEMQKMK--YAFKCHRIKEDGIEKIYPVNAISFHQEY  247 (327)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~--~~~~~h~~~~~~~~~~~~v~~v~~spd~  247 (327)
                      .......+.  ..-.+.+|++..++++....++.+|-.-.  ....+.+.  +.+++|         .+.|.+.+|+|+.
T Consensus       222 ~~idtnq~~--n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH---------~saV~~~aFsn~S  290 (420)
T KOG2096|consen  222 QSIDTNQSS--NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH---------QSAVLAAAFSNSS  290 (420)
T ss_pred             eeecccccc--ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc---------hhheeeeeeCCCc
Confidence            221111111  12345678888777777777777754221  11222222  233444         3468999999999


Q ss_pred             CeEEEecCCCeEEEEeCCC-------ceeeeecC----cC-CcceEEEEECCCCCEEEEEEc
Q psy11885        248 NTFATGGSDGYVNIWDGFN-------KKRLCQFH----RY-DTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       248 ~~lasgs~dg~i~iWd~~~-------~~~~~~~~----~~-~~~v~~l~fspdg~~la~~~~  297 (327)
                      ..++|.|.||++||||..-       .+.+....    .. ..++ .|+.||.|+.||.+.+
T Consensus       291 ~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~g  351 (420)
T KOG2096|consen  291 TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSFG  351 (420)
T ss_pred             ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeecC
Confidence            9999999999999999642       22222221    11 2244 7999999999999865

>KOG1034|consensus

Probab=99.81  E-value=3.3e-18  Score=140.73  Aligned_cols=245  Identities=16%  Similarity=0.278  Sum_probs=165.4

Q ss_pred             CCCCeeEEEEecC---CCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCC
Q psy11885         14 PEDGITAVKFAPN---SNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        14 ~~~~I~~i~fs~~---~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      ++..-..++|+=+   ++.+||+||.-|.|+|.|+.++++. ...+|...|+.+.+.  ..++++|+|.|.+||+|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            5567778888753   4569999999999999999999864 456899999999995  445889999999999999999


Q ss_pred             Cceee-e---ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce------eeeeeC------------CCcEE---
Q psy11885         88 QTETV-I---GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC------VGNYTQ------------PDKVF---  142 (327)
Q Consensus        88 ~~~~~-~---~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~------~~~~~~------------~~~~~---  142 (327)
                      ..+.. +   .+|.+.|.++.|+.+|.+|+|++.|..|++|++...+-      ...+..            +-..+   
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~  247 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT  247 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence            88754 3   46999999999999999999999999999999974321      101100            00011   


Q ss_pred             --------EEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcc
Q psy11885        143 --------TMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE  214 (327)
Q Consensus       143 --------~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  214 (327)
                              ++.+-|+.+++=+.++.|..|-....+.-.+   ...+.         ....-+++.         ++.   
T Consensus       248 diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~---~vkp~---------es~~Ti~~~---------~~~---  303 (385)
T KOG1034|consen  248 DIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIH---NVKPP---------ESATTILGE---------FDY---  303 (385)
T ss_pred             ccccchHHHHHHHhhheeecccCceEEEEecchhhhhhh---ccCCC---------ccceeeeeE---------ecc---
Confidence                    1112366778878888999996532211000   00000         000000000         000   


Q ss_pred             cccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeee--ec--CcCCcceEEEEECCCCC
Q psy11885        215 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC--QF--HRYDTGITSLCFSYDGN  290 (327)
Q Consensus       215 ~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~--~~--~~~~~~v~~l~fspdg~  290 (327)
                            .         ..+ + +.--.+|.|-++.||.|.+.|.|++||+++.++..  ++  ....+.|...+||.||.
T Consensus       304 ------~---------~c~-i-Wfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs  366 (385)
T KOG1034|consen  304 ------P---------MCD-I-WFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS  366 (385)
T ss_pred             ------C---------ccc-e-EEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence                  0         000 0 11235667888999999999999999998765521  22  12234689999999999


Q ss_pred             EEEEEEccc
Q psy11885        291 VLAIACSYN  299 (327)
Q Consensus       291 ~la~~~~~~  299 (327)
                      .|+.-|++.
T Consensus       367 ~lv~vcdd~  375 (385)
T KOG1034|consen  367 ILVLVCDDG  375 (385)
T ss_pred             EEEEEeCCC
Confidence            998877654

>KOG4227|consensus

Probab=99.81  E-value=7.9e-18  Score=141.60  Aligned_cols=277  Identities=16%  Similarity=0.206  Sum_probs=180.2

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC------CeEEEEec--CCCceeeEEE-eCCceEEEEecCCcEEEE
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN------NNLRLKYA--HSDPVLDCCF-QDAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~--h~~~v~~~~~-~~~~~~~sgs~Dg~i~vw   83 (327)
                      .|.+.|++|.|+.+ +++|++||.|..+++|+++.      .+.+...+  |...|.|++| +.+..++||+.+++|.+-
T Consensus        54 ~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H  132 (609)
T KOG4227|consen   54 EHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH  132 (609)
T ss_pred             hhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence            36789999999996 68999999999999999863      23333333  4578999999 577788999999999999


Q ss_pred             EcCCCceeeeecCCc---cEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc-eeeeee---CCCcEEEEecC---CCeEEE
Q psy11885         84 DFNTQTETVIGTHDQ---PIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR-CVGNYT---QPDKVFTMSLC---GEKFVV  153 (327)
Q Consensus        84 d~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~-~~~~~~---~~~~~~~~~~~---~~~~~~  153 (327)
                      |+++.+......|+.   .|..+..+|-.+.|++.+.++.|.+||.+... .+.-+.   .+.....+-++   +..+++
T Consensus       133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~  212 (609)
T KOG4227|consen  133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV  212 (609)
T ss_pred             ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence            999887665556654   89999999999999999999999999998764 221111   12222233332   456888


Q ss_pred             EeCCCeEEEEECCCCccceeeecccceeee-----EEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeec
Q psy11885        154 GTAGRKVCIWDLRNMGYIMQRRESSLKFQT-----RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK  228 (327)
Q Consensus       154 ~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~  228 (327)
                      .+..+-+.+||+|..+.....+...+..+.     ....+++++.-+.. --.+..- .+++.... +.....+. |  .
T Consensus       213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms-iRR~~~P-~~~D~~S~-R~~V~k~D-~--N  286 (609)
T KOG4227|consen  213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS-IRRGKCP-LYFDFISQ-RCFVLKSD-H--N  286 (609)
T ss_pred             ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh-hhccCCC-EEeeeecc-cceeEecc-C--C
Confidence            888899999999976543322222211111     23345555432221 1111111 11222110 00011100 1  0


Q ss_pred             cCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC-----c------------------eeeeecCcCCcceEEEEE
Q psy11885        229 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN-----K------------------KRLCQFHRYDTGITSLCF  285 (327)
Q Consensus       229 ~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~-----~------------------~~~~~~~~~~~~v~~l~f  285 (327)
                      ..+......+.+++|--|. .+++||.+=.|++|.+.-     |                  +.+..+++|.+-+..+.|
T Consensus       287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF  365 (609)
T KOG4227|consen  287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF  365 (609)
T ss_pred             CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence            1133344567888997665 499999999999997531     1                  123346788888899999


Q ss_pred             CCCCCEEEEEEc
Q psy11885        286 SYDGNVLAIACS  297 (327)
Q Consensus       286 spdg~~la~~~~  297 (327)
                      +|...+|++++-
T Consensus       366 ~~H~~~l~SSGV  377 (609)
T KOG4227|consen  366 SQHNNLLVSSGV  377 (609)
T ss_pred             cCCcceEeccch
Confidence            999888876643

>KOG1273|consensus

Probab=99.81  E-value=9.1e-18  Score=137.52  Aligned_cols=273  Identities=13%  Similarity=0.187  Sum_probs=182.9

Q ss_pred             eeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeeec
Q psy11885         18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGT   95 (327)
Q Consensus        18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~   95 (327)
                      -+|+.|++- +.+||+|..||.|-|||+.+..+ +.+.+|-.+|.+++|+ ++..++|+|.|..|++||+..+.......
T Consensus        26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccC-cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            689999995 68999999999999999999875 4455799999999996 89999999999999999998887543334


Q ss_pred             CCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCC--CceeeeeeCC--C---cEEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885         96 HDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRS--SRCVGNYTQP--D---KVFTMSLCGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus        96 h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~--~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~d~~v~iwD~~~  167 (327)
                      -+++|....|+|.. +.++..-.+..-.+-++..  ..++..-...  +   ....+...|+++++|+..|.+.++|..+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            57899999999854 4444444444444444433  2222211110  1   1123556689999999999999999998


Q ss_pred             CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEcc-CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC
Q psy11885        168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLD-TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE  246 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd  246 (327)
                      .+.+...+... ....+.+.+...+..+++.+.+..++.+... .....+..... ..|....  ....-+=++++||.+
T Consensus       185 ~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e-~~~K~qD--vVNk~~Wk~ccfs~d  260 (405)
T KOG1273|consen  185 LECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE-PEHKLQD--VVNKLQWKKCCFSGD  260 (405)
T ss_pred             heeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC-hhHHHHH--HHhhhhhhheeecCC
Confidence            87654333222 1234666777777777777777666553321 00000000000 0011100  000012357899999


Q ss_pred             CCeEEEecCC-CeEEEEeCCCceeeeecCcCC-cceEEEEECCCCCEEEEE
Q psy11885        247 YNTFATGGSD-GYVNIWDGFNKKRLCQFHRYD-TGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       247 ~~~lasgs~d-g~i~iWd~~~~~~~~~~~~~~-~~v~~l~fspdg~~la~~  295 (327)
                      |.+++.|+.- ..++||....|..+..+++.. .....++|.|--..+++-
T Consensus       261 geYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si  311 (405)
T KOG1273|consen  261 GEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI  311 (405)
T ss_pred             ccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence            9999888764 579999999999998888776 357788999976666554

>KOG2055|consensus

Probab=99.81  E-value=3.9e-18  Score=145.99  Aligned_cols=242  Identities=15%  Similarity=0.225  Sum_probs=175.5

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE---EecCCCc-eeeEEE-eCCceEEEEecCCcEEEEEcCCCce
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL---KYAHSDP-VLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~h~~~-v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      -+|.++.|+|++.+.++++|.-.-++.||+++.+...   .+++..+ +..... ++++.++..|..|.|.+....++..
T Consensus       258 fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el  337 (514)
T KOG2055|consen  258 FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL  337 (514)
T ss_pred             CccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh
Confidence            4789999999765589999999999999999887432   3344432 222223 5788999999999999998777665


Q ss_pred             eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC----cEEEEecCCCeEEEEeCCCeEEEEECC
Q psy11885         91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD----KVFTMSLCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~v~iwD~~  166 (327)
                      ......++.|..++|+.+++.|+..+.+|.|.+||++++.|+..+...+    ..++.+.++..+|+|+..|.|.|||..
T Consensus       338 i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  338 ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence            4444457889999999999999999999999999999999999887543    345667789999999999999999965


Q ss_pred             CC----ccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        167 NM----GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       167 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                      +-    ..-.......+...+..+.|+++.+.+++++......+.+......  .+   |......   ...+.-|.|++
T Consensus       418 s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~--TV---FsNfP~~---n~~vg~vtc~a  489 (514)
T KOG2055|consen  418 SCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC--TV---FSNFPTS---NTKVGHVTCMA  489 (514)
T ss_pred             hhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce--ee---eccCCCC---CCcccceEEEE
Confidence            31    1000111223445567788999998888887765555544332111  11   1111111   12234589999


Q ss_pred             EecCCCeEEEecCCCeEEEEeCC
Q psy11885        243 FHQEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       243 ~spd~~~lasgs~dg~i~iWd~~  265 (327)
                      |||.+.+||.|-++|.+.+|.+.
T Consensus       490 FSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  490 FSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ecCCCceEEeecCCCceeeEeec
Confidence            99999999999999999999753

>KOG4378|consensus

Probab=99.80  E-value=6.3e-18  Score=145.95  Aligned_cols=263  Identities=14%  Similarity=0.237  Sum_probs=179.0

Q ss_pred             CCeeEEEEecCCCcEEEEE--ECCCcEEEEECCCC--eEEEEe-cCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCc
Q psy11885         16 DGITAVKFAPNSNQFLLAS--SWDCNVSLYDITNN--NLRLKY-AHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~--~~d~~i~iwd~~~~--~~~~~~-~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      -+|..+.|...  .+|+++  +.|..|++|.-...  ++.... ...+.-.|++. +...++++||..+.|++||++...
T Consensus        35 pg~~s~~w~~~--n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl  112 (673)
T KOG4378|consen   35 PGDFSFNWQRR--NFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL  112 (673)
T ss_pred             Ccceeeecccc--ceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence            35999999973  345555  45778999965433  222211 12223233332 345788999999999999998554


Q ss_pred             e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-Cc---EEEEecCCC-eEEEEeCCCeEEEE
Q psy11885         90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DK---VFTMSLCGE-KFVVGTAGRKVCIW  163 (327)
Q Consensus        90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~---~~~~~~~~~-~~~~~~~d~~v~iw  163 (327)
                      . ..+..|...|+++.|.-...+|++++..|.|-+..+.++...-.+..+ +.   ...+++... .|.+++.+|.|.+|
T Consensus       113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw  192 (673)
T KOG4378|consen  113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW  192 (673)
T ss_pred             HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence            4 357789999999999988899999999999999999887765566554 22   233444444 46678999999999


Q ss_pred             ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      |+..+...+... ..+.-+.+.+.|.|....++ .+.+-+..|..+|.+.....-...+            -.|..+++|
T Consensus       193 Dv~g~sp~~~~~-~~HsAP~~gicfspsne~l~-vsVG~Dkki~~yD~~s~~s~~~l~y------------~~Plstvaf  258 (673)
T KOG4378|consen  193 DVQGMSPIFHAS-EAHSAPCRGICFSPSNEALL-VSVGYDKKINIYDIRSQASTDRLTY------------SHPLSTVAF  258 (673)
T ss_pred             eccCCCcccchh-hhccCCcCcceecCCccceE-EEecccceEEEeecccccccceeee------------cCCcceeee
Confidence            998776543322 22223345566777655433 3344444555567653211111111            126789999


Q ss_pred             ecCCCeEEEecCCCeEEEEeCCCce-eeeecCcCCcceEEEEECCCCCEEEEE
Q psy11885        244 HQEYNTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd~~~~~-~~~~~~~~~~~v~~l~fspdg~~la~~  295 (327)
                      +++|.+|+.|...|.|..||++..+ ++..+..|...|++|+|-|.- .+++-
T Consensus       259 ~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~-tvltk  310 (673)
T KOG4378|consen  259 SECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP-TVLTK  310 (673)
T ss_pred             cCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc-eeeec
Confidence            9999999999999999999998654 567778899999999998853 44433

>KOG2048|consensus

Probab=99.80  E-value=1.5e-16  Score=142.10  Aligned_cols=201  Identities=14%  Similarity=0.209  Sum_probs=146.5

Q ss_pred             ceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEEecCCcEEEE
Q psy11885          6 TEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus         6 ~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vw   83 (327)
                      +++..+.+....|-+++|++ + ..|++.+.+|+|.-||+.+.+.+... .-.+++.+++.+ .+..++.|+.||.+..+
T Consensus        60 ~~~vi~g~~drsIE~L~W~e-~-~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~  137 (691)
T KOG2048|consen   60 LEPVIHGPEDRSIESLAWAE-G-GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDF  137 (691)
T ss_pred             eeEEEecCCCCceeeEEEcc-C-CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEE
Confidence            35556667778999999996 3 45899999999999999998865544 355778899985 56677788899977777


Q ss_pred             EcCCCcee---eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee-------CCCcEEEE--e-cCCCe
Q psy11885         84 DFNTQTET---VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-------QPDKVFTM--S-LCGEK  150 (327)
Q Consensus        84 d~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~-------~~~~~~~~--~-~~~~~  150 (327)
                      +...+...   .+...++.|.+|.|++++..+++|+.||.|++||..++..++...       ....++.+  . .....
T Consensus       138 s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t  217 (691)
T KOG2048|consen  138 SIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST  217 (691)
T ss_pred             ecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc
Confidence            77665432   344557889999999999999999999999999999887665221       11223222  2 24667


Q ss_pred             EEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEcc
Q psy11885        151 FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLD  210 (327)
Q Consensus       151 ~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  210 (327)
                      +++|...|+|++||...+..+....  .+.....|++..++.+.++.++.++.+..+...
T Consensus       218 I~sgDS~G~V~FWd~~~gTLiqS~~--~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~  275 (691)
T KOG2048|consen  218 IASGDSAGTVTFWDSIFGTLIQSHS--CHDADVLALAVADNEDRVFSAGVDPKIIQYSLT  275 (691)
T ss_pred             EEEecCCceEEEEcccCcchhhhhh--hhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence            9999999999999987654322111  122234677778888888888888877654433

>KOG1273|consensus

Probab=99.80  E-value=3.2e-18  Score=140.15  Aligned_cols=234  Identities=16%  Similarity=0.165  Sum_probs=156.5

Q ss_pred             eeeEEEe-CCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC
Q psy11885         60 VLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ  137 (327)
Q Consensus        60 v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~  137 (327)
                      ..||.|+ -|.+++.|..||.|.+||+.+... ..+..|..+|.+++||+||+.|+|+|.|..|.+||+..+.+++.+.-
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            5678896 789999999999999999988654 56789999999999999999999999999999999999999988776


Q ss_pred             CCcEEEEecC--CC-eEEEEeCCCeEEEEECCCCcc--ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCC
Q psy11885        138 PDKVFTMSLC--GE-KFVVGTAGRKVCIWDLRNMGY--IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG  212 (327)
Q Consensus       138 ~~~~~~~~~~--~~-~~~~~~~d~~v~iwD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  212 (327)
                      +..+....+.  .. ..++.-.+..-.+-++.....  .......++.....+..+.+.++.+.+|...|...+...++.
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~  185 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL  185 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence            6665544433  22 233322232233333332211  111112223333444556677788888988888777554432


Q ss_pred             cccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCc-------ee--eeecCc--CCcceE
Q psy11885        213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK-------KR--LCQFHR--YDTGIT  281 (327)
Q Consensus       213 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~-------~~--~~~~~~--~~~~v~  281 (327)
                      .    ....++   .     .....|..+.|+..|+.|+.-+.|+.||.|++.+-       +.  .+++..  ....=.
T Consensus       186 e----~vas~r---i-----ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk  253 (405)
T KOG1273|consen  186 E----CVASFR---I-----TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK  253 (405)
T ss_pred             e----eeeeee---e-----chheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence            2    111111   1     11236788999999999999999999999986521       11  112111  011225


Q ss_pred             EEEECCCCCEEEEEEccccccCCC
Q psy11885        282 SLCFSYDGNVLAIACSYNYELETP  305 (327)
Q Consensus       282 ~l~fspdg~~la~~~~~~~~~~~~  305 (327)
                      +++||.||.|+.+|+.-...|+.|
T Consensus       254 ~ccfs~dgeYv~a~s~~aHaLYIW  277 (405)
T KOG1273|consen  254 KCCFSGDGEYVCAGSARAHALYIW  277 (405)
T ss_pred             heeecCCccEEEeccccceeEEEE
Confidence            689999999999887644444443

>KOG0646|consensus

Probab=99.80  E-value=8.4e-18  Score=144.09  Aligned_cols=235  Identities=17%  Similarity=0.255  Sum_probs=166.0

Q ss_pred             cEEEEEECC-CcEEEEECCCCeE-EEEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEE
Q psy11885         29 QFLLASSWD-CNVSLYDITNNNL-RLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVE  104 (327)
Q Consensus        29 ~~l~s~~~d-~~i~iwd~~~~~~-~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~  104 (327)
                      .+++++... ..+.+|.+..... ....--+++|.+++- +.|.+++.|...+.+.+|.+.++.. ..+..|=.+|++|.
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~  130 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK  130 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence            355555443 4788898876543 223345678888876 5677777777999999999999876 35678989999999


Q ss_pred             EeCCCCEEEEEECCCeEEEEeCCC---------CceeeeeeCCC-cEEEEec----CCCeEEEEeCCCeEEEEECCCCcc
Q psy11885        105 YSDEVNCILTGSWDTSVKMWDPRS---------SRCVGNYTQPD-KVFTMSL----CGEKFVVGTAGRKVCIWDLRNMGY  170 (327)
Q Consensus       105 ~~~~~~~l~sgs~d~~i~lwdl~~---------~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~d~~v~iwD~~~~~~  170 (327)
                      |+.||..|+|||.||.|.+|++-.         -+++..+..+. .+..+..    +..++++++.|+++|+||+..+..
T Consensus       131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L  210 (476)
T KOG0646|consen  131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL  210 (476)
T ss_pred             EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence            999999999999999999998732         23444444433 2333322    345799999999999999865421


Q ss_pred             ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeE
Q psy11885        171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF  250 (327)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~l  250 (327)
                      ...                        .                      .+.            .++.+++.+|-...+
T Consensus       211 Llt------------------------i----------------------~fp------------~si~av~lDpae~~~  232 (476)
T KOG0646|consen  211 LLT------------------------I----------------------TFP------------SSIKAVALDPAERVV  232 (476)
T ss_pred             eEE------------------------E----------------------ecC------------CcceeEEEcccccEE
Confidence            100                        0                      000            136678888888888


Q ss_pred             EEecCCCeEEEEeCCCce----------------eeeecCcCCc--ceEEEEECCCCCEEEEEEccccccCCCC------
Q psy11885        251 ATGGSDGYVNIWDGFNKK----------------RLCQFHRYDT--GITSLCFSYDGNVLAIACSYNYELETPP------  306 (327)
Q Consensus       251 asgs~dg~i~iWd~~~~~----------------~~~~~~~~~~--~v~~l~fspdg~~la~~~~~~~~~~~~~------  306 (327)
                      ..|+++|.|.+-++.+..                ....+.+|+.  .|+||+.|-||.+|++|+.++....+.+      
T Consensus       233 yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i  312 (476)
T KOG0646|consen  233 YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI  312 (476)
T ss_pred             EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence            888888888877654321                2233456666  8999999999999999998877666642      


Q ss_pred             -----CCCCCCcEEEEEccc
Q psy11885        307 -----DPIPPNNIFIRHVTD  321 (327)
Q Consensus       307 -----~~~~~~~~~~~~~~~  321 (327)
                           ...|-+++.|+++.+
T Consensus       313 Rtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  313 RTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             HHHhhhccccceeEeecccc
Confidence                 345667777766543

>KOG1538|consensus

Probab=99.80  E-value=1.2e-17  Score=148.91  Aligned_cols=269  Identities=17%  Similarity=0.271  Sum_probs=184.0

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI   93 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~   93 (327)
                      -.|..++|.|++.++++++  +..+.+||.+.|.+ ....+|++.|.+++|+ +|...+||+.|..|.+|.-.- ....-
T Consensus        13 hci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~Lk   89 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILK   89 (1081)
T ss_pred             cchheeEECCCCceEEEec--CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceee
Confidence            3899999999877666655  56899999998874 5667899999999996 899999999999999996321 22233


Q ss_pred             ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEec--CCCeEEEEeCCCeEEEEECCCCccc
Q psy11885         94 GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSL--CGEKFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      ..|++.|.+..|+|-...++|++- ...-+|...... +........+.++++  +|..++.|-.+|+|.+=+-..-..+
T Consensus        90 YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             eccCCeeeEeecCchHHHhhhcch-hhccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence            579999999999999999999875 345688865433 333333344555444  5889999999999998754332223


Q ss_pred             eeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE
Q psy11885        172 MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA  251 (327)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la  251 (327)
                      ...+...-..+.-.+.++|....    +.+....+..|  +...  -.+.+.+.....+. .-.+..-|+.+-|+|.++.
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~----G~~di~aV~DW--~qTL--SFy~LsG~~Igk~r-~L~FdP~CisYf~NGEy~L  238 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGE----GRNDILAVADW--GQTL--SFYQLSGKQIGKDR-ALNFDPCCISYFTNGEYIL  238 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCC----CccceEEEEec--ccee--EEEEecceeecccc-cCCCCchhheeccCCcEEE
Confidence            22332223334456677765421    11222233222  2211  01111111111000 0012356899999999999


Q ss_pred             EecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        252 TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       252 sgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      .|+.|+.+.+|. ++|-++.++-..+..||+++..|++++++.||-++
T Consensus       239 iGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG  285 (1081)
T KOG1538|consen  239 LGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG  285 (1081)
T ss_pred             EccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccC
Confidence            999999999997 66788888877778999999999999999999764

>KOG0650|consensus

Probab=99.80  E-value=3.1e-17  Score=144.59  Aligned_cols=273  Identities=16%  Similarity=0.204  Sum_probs=185.9

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeC--CceEEEEecCCc----------
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQD--AVHSFSGGLDCT----------   79 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~--~~~~~sgs~Dg~----------   79 (327)
                      .-|++.|++|+.+| .+.+|++|+.||+++||.+.++.+.........|.|++|.+  ...+++.+....          
T Consensus       397 rGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~  475 (733)
T KOG0650|consen  397 RGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD  475 (733)
T ss_pred             eccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence            44778999999999 67999999999999999999999887777778899999942  222223222322          


Q ss_pred             -----------------------EEEEEcCCCc-----eeeeecCCccEEEEEEeCCCCEEEEEECC---CeEEEEeCCC
Q psy11885         80 -----------------------LKMFDFNTQT-----ETVIGTHDQPIRAVEYSDEVNCILTGSWD---TSVKMWDPRS  128 (327)
Q Consensus        80 -----------------------i~vwd~~~~~-----~~~~~~h~~~V~~l~~~~~~~~l~sgs~d---~~i~lwdl~~  128 (327)
                                             +..|.-....     ....-.|..+|+.+.|+..|.+|++...+   ..|.+.+|..
T Consensus       476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK  555 (733)
T KOG0650|consen  476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK  555 (733)
T ss_pred             hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence                                   3334322110     01223577899999999999999987554   5688888876


Q ss_pred             Cceeeeee-CCCcEEE--EecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEE
Q psy11885        129 SRCVGNYT-QPDKVFT--MSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAA  205 (327)
Q Consensus       129 ~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (327)
                      ++...-|. ..+.+..  |.+...+|++++ .+.|||||+-.+..+.......  .....++.+|.++.+++++.+...+
T Consensus       556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~--kwiS~msihp~GDnli~gs~d~k~~  632 (733)
T KOG0650|consen  556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGS--KWISSMSIHPNGDNLILGSYDKKMC  632 (733)
T ss_pred             ccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCC--eeeeeeeecCCCCeEEEecCCCeeE
Confidence            66544443 2333444  455555666664 5789999997654332221111  1234567889999999999988877


Q ss_pred             EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEe------C-CCc--eeeeecCcC
Q psy11885        206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD------G-FNK--KRLCQFHRY  276 (327)
Q Consensus       206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd------~-~~~--~~~~~~~~~  276 (327)
                      .+.++.+..   ....+..|.         ..+.+|+||+...+||+|+.||++.|+-      + .+.  -++..+.+|
T Consensus       633 WfDldlssk---Pyk~lr~H~---------~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH  700 (733)
T KOG0650|consen  633 WFDLDLSSK---PYKTLRLHE---------KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH  700 (733)
T ss_pred             EEEcccCcc---hhHHhhhhh---------hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence            655554421   111112232         2578999999999999999999998883      2 111  234556777


Q ss_pred             Ccc----eEEEEECCCCCEEEEEEcccc
Q psy11885        277 DTG----ITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       277 ~~~----v~~l~fspdg~~la~~~~~~~  300 (327)
                      ...    |..+.|+|..-+|.+++.++-
T Consensus       701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~t  728 (733)
T KOG0650|consen  701 EKTNDLGVLDTIWHPRQPWLFSAGADGT  728 (733)
T ss_pred             eeecccceEeecccCCCceEEecCCCce
Confidence            654    889999999999999976643

>KOG1063|consensus

Probab=99.79  E-value=2.1e-17  Score=147.80  Aligned_cols=283  Identities=14%  Similarity=0.186  Sum_probs=189.1

Q ss_pred             cCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe---E-EEEe---cC-CCceeeEEEe-CCceEEEEecCCcE
Q psy11885         10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN---L-RLKY---AH-SDPVLDCCFQ-DAVHSFSGGLDCTL   80 (327)
Q Consensus        10 ~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~---~-~~~~---~h-~~~v~~~~~~-~~~~~~sgs~Dg~i   80 (327)
                      +..-|++=|.++-|+|. +..|+++|+|.++.+|.-....   . ....   ++ ......+-|+ +++.+++-|.-|..
T Consensus       262 ll~GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF  340 (764)
T ss_pred             hhcCcccceEEEEEccc-hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence            34679999999999995 4678999999999999876542   1 1122   22 2345566674 66778888999999


Q ss_pred             EEEEcCCCc----eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee-eeeeCC---C-cEEEEec--CCC
Q psy11885         81 KMFDFNTQT----ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV-GNYTQP---D-KVFTMSL--CGE  149 (327)
Q Consensus        81 ~vwd~~~~~----~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~-~~~~~~---~-~~~~~~~--~~~  149 (327)
                      ++|......    ...+.+|.+.|++++|+|.|.+|+|.|.|.+-|+|-.-.++.. +++..|   + ...++++  ...
T Consensus       341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~  420 (764)
T KOG1063|consen  341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL  420 (764)
T ss_pred             EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence            999832221    2356789999999999999999999999999999976533221 222222   1 1233333  245


Q ss_pred             eEEEEeCCCeEEEEECCCC--------------------------------cccee-e----------ec----------
Q psy11885        150 KFVVGTAGRKVCIWDLRNM--------------------------------GYIMQ-R----------RE----------  176 (327)
Q Consensus       150 ~~~~~~~d~~v~iwD~~~~--------------------------------~~~~~-~----------~~----------  176 (327)
                      +|++|....-+|+|+....                                +.+.. .          .+          
T Consensus       421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L  500 (764)
T KOG1063|consen  421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL  500 (764)
T ss_pred             eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence            6777777788899976310                                00000 0          00          


Q ss_pred             --c-------------------cceeeeEEeEEeeCCCceEEEeecC---eEEEEEccCCcccccceeeeeeeeeccCCe
Q psy11885        177 --S-------------------SLKFQTRCIKCFPNKQGYVLSSIEG---RAAVEYLDTGPEMQKMKYAFKCHRIKEDGI  232 (327)
Q Consensus       177 --~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~  232 (327)
                        +                   .+.+...+++.+|+++.+++++...   ...|++|.+..-.  ....+..|.+     
T Consensus       501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~--~~~~L~~HsL-----  573 (764)
T KOG1063|consen  501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL--QVQELEGHSL-----  573 (764)
T ss_pred             cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh--hhheecccce-----
Confidence              0                   0012234566667766666654433   3456667654322  2223444544     


Q ss_pred             eeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCce----eeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        233 EKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK----RLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       233 ~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~----~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                          .|+.++||||+++|++.|.|+++.+|...+..    .....+.|..-||++.|+||+.++||++.+...+-+
T Consensus       574 ----TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW  645 (764)
T KOG1063|consen  574 ----TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW  645 (764)
T ss_pred             ----EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence                68999999999999999999999999864432    222356777779999999999999999987665555

>KOG1332|consensus

Probab=99.79  E-value=7.6e-18  Score=133.41  Aligned_cols=198  Identities=17%  Similarity=0.267  Sum_probs=144.6

Q ss_pred             CCCCCCeeEEEEec-CCCcEEEEEECCCcEEEEECCCCeEEE---EecCCCceeeEEEe---CCceEEEEecCCcEEEEE
Q psy11885         12 SPPEDGITAVKFAP-NSNQFLLASSWDCNVSLYDITNNNLRL---KYAHSDPVLDCCFQ---DAVHSFSGGLDCTLKMFD   84 (327)
Q Consensus        12 ~~~~~~I~~i~fs~-~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~h~~~v~~~~~~---~~~~~~sgs~Dg~i~vwd   84 (327)
                      .-|.++|.-++|.. .-+.+||++++||.|.||.-++++-..   ...|+..|++++|.   -+..|+++++||.|.+.+
T Consensus        53 ~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~  132 (299)
T KOG1332|consen   53 TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT  132 (299)
T ss_pred             cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence            45789999999974 446799999999999999999886322   23588899999993   366788999999999998


Q ss_pred             cCCCc----eeeeecCCccEEEEEEeCC---C-----------CEEEEEECCCeEEEEeCCCCceee--eeeCCC-cE--
Q psy11885         85 FNTQT----ETVIGTHDQPIRAVEYSDE---V-----------NCILTGSWDTSVKMWDPRSSRCVG--NYTQPD-KV--  141 (327)
Q Consensus        85 ~~~~~----~~~~~~h~~~V~~l~~~~~---~-----------~~l~sgs~d~~i~lwdl~~~~~~~--~~~~~~-~~--  141 (327)
                      .+...    ......|.-.|++++|.|.   |           +.|+||+.|+.|++|+...++...  ++..+. -+  
T Consensus       133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD  212 (299)
T KOG1332|consen  133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD  212 (299)
T ss_pred             EcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence            87652    2345679999999999886   4           569999999999999998764332  233322 12  


Q ss_pred             EEEecC----CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccc
Q psy11885        142 FTMSLC----GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK  217 (327)
Q Consensus       142 ~~~~~~----~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  217 (327)
                      .+++|.    ...+++++.||+|-||-.+. +.      ..                              |.     .+
T Consensus       213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~-e~------e~------------------------------wk-----~t  250 (299)
T KOG1332|consen  213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDE-EY------EP------------------------------WK-----KT  250 (299)
T ss_pred             hhhccccCCCceeeEEecCCCcEEEEEecC-cc------Cc------------------------------cc-----cc
Confidence            233332    23599999999999997541 10      00                              00     00


Q ss_pred             ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEe
Q psy11885        218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd  263 (327)
                      +...+.            .+++.++||+.|..|++++.|+.|.+|.
T Consensus       251 ll~~f~------------~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  251 LLEEFP------------DVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             ccccCC------------cceEEEEEeccccEEEEecCCcEEEEEE
Confidence            000011            1478899999999999999999999996

>KOG0302|consensus

Probab=99.76  E-value=1.4e-17  Score=139.35  Aligned_cols=160  Identities=14%  Similarity=0.292  Sum_probs=126.9

Q ss_pred             ceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE----EEEecCCCceeeEEEe--CCceEEEEecCCc
Q psy11885          6 TEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL----RLKYAHSDPVLDCCFQ--DAVHSFSGGLDCT   79 (327)
Q Consensus         6 ~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~   79 (327)
                      +.|+.+. |.+.=.+|.|||-....|++|..-+.|++|...++.-    ..+.+|++.|-.++|+  ....++|||-||+
T Consensus       203 Pl~t~~g-hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs  281 (440)
T KOG0302|consen  203 PLFTFNG-HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS  281 (440)
T ss_pred             ceEEecc-cCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence            3556555 4467789999995334588898889999999988762    3345699999999996  5668889999999


Q ss_pred             EEEEEcCCCce---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC---ceeeeeeCC-CcEEEEecC---CC
Q psy11885         80 LKMFDFNTQTE---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS---RCVGNYTQP-DKVFTMSLC---GE  149 (327)
Q Consensus        80 i~vwd~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~---~~~~~~~~~-~~~~~~~~~---~~  149 (327)
                      ||+||++.+..   .....|++.|+.|.|+..-.+|++|+.||++++||||+-   +++..++.+ ..+.++.+.   ..
T Consensus       282 IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  282 IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS  361 (440)
T ss_pred             EEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence            99999998743   345789999999999987779999999999999999874   456666643 345555554   33


Q ss_pred             eEEEEeCCCeEEEEECC
Q psy11885        150 KFVVGTAGRKVCIWDLR  166 (327)
Q Consensus       150 ~~~~~~~d~~v~iwD~~  166 (327)
                      .+++++.|.+|.|||+.
T Consensus       362 ~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  362 VIAASGEDNQITIWDLS  378 (440)
T ss_pred             eEEeccCCCcEEEEEee
Confidence            58889999999999985

>KOG1963|consensus

Probab=99.76  E-value=1.1e-15  Score=140.33  Aligned_cols=276  Identities=18%  Similarity=0.230  Sum_probs=175.9

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC--Ce---EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN--NN---LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~--~~---~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      |.-.++|.++||. ++++|++..||.|.+|.-..  +.   ....-=|.+.|.+++|+ +|.+++|||..+.+.+|.+++
T Consensus       204 Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  204 HTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4445899999995 68999999999999997544  22   22222277899999995 999999999999999999999


Q ss_pred             CceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC---C-----------CcEEEEecCCCeEEE
Q psy11885         88 QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ---P-----------DKVFTMSLCGEKFVV  153 (327)
Q Consensus        88 ~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~  153 (327)
                      +..++++.-.++|..+.++||+...+....|+.|.+....+.+...++.+   +           ....++++..+.++.
T Consensus       283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl  362 (792)
T KOG1963|consen  283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL  362 (792)
T ss_pred             CCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence            99888998999999999999999999999999999987654332222211   1           122344454456777


Q ss_pred             EeCCCeEEEEECCCCccceeeecc---------cceeeeEEeEEeeCCCceEEE--------eecCeEEEEEccCCcccc
Q psy11885        154 GTAGRKVCIWDLRNMGYIMQRRES---------SLKFQTRCIKCFPNKQGYVLS--------SIEGRAAVEYLDTGPEMQ  216 (327)
Q Consensus       154 ~~~d~~v~iwD~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~  216 (327)
                      .+..+.|.+||+-+...+...+..         ........+...-.+..+++.        ..++...+.+|...+...
T Consensus       363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k  442 (792)
T KOG1963|consen  363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK  442 (792)
T ss_pred             cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc
Confidence            889999999999765543221110         111111222222222222221        112233444443222111


Q ss_pred             ccee---eeeeeeeccCCeeeEEEeeEEEEecCCC-eEEEecCCCeEEEEeCCCceee------eec----CcCCcceEE
Q psy11885        217 KMKY---AFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGGSDGYVNIWDGFNKKRL------CQF----HRYDTGITS  282 (327)
Q Consensus       217 ~~~~---~~~~h~~~~~~~~~~~~v~~v~~spd~~-~lasgs~dg~i~iWd~~~~~~~------~~~----~~~~~~v~~  282 (327)
                      ....   ....|..        .-+..+.++|..+ .++++|.||.++||-..+-+.+      ...    .-|..++++
T Consensus       443 t~~L~T~I~~PH~~--------~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a  514 (792)
T KOG1963|consen  443 TFILNTKINNPHGN--------AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITA  514 (792)
T ss_pred             eeEEEEEEecCCCc--------eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccc
Confidence            1110   0111211        1233444555555 8999999999999976322211      111    124568899


Q ss_pred             EEECCCCCEEEEEEcc
Q psy11885        283 LCFSYDGNVLAIACSY  298 (327)
Q Consensus       283 l~fspdg~~la~~~~~  298 (327)
                      ++||.||..||.+.++
T Consensus       515 ~~fs~dGslla~s~~~  530 (792)
T KOG1963|consen  515 LCFSQDGSLLAVSFDD  530 (792)
T ss_pred             hhhcCCCcEEEEecCC
Confidence            9999999999988553

>KOG0307|consensus

Probab=99.76  E-value=8.3e-18  Score=158.10  Aligned_cols=272  Identities=14%  Similarity=0.249  Sum_probs=181.8

Q ss_pred             eEEEEecCCCcEEEEE----------ECCCcEEEEECC--CCe--EEEE--ecCCCceeeEEEe-CCc----eEEEEecC
Q psy11885         19 TAVKFAPNSNQFLLAS----------SWDCNVSLYDIT--NNN--LRLK--YAHSDPVLDCCFQ-DAV----HSFSGGLD   77 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~----------~~d~~i~iwd~~--~~~--~~~~--~~h~~~v~~~~~~-~~~----~~~sgs~D   77 (327)
                      ..++|+|.+..+|++|          +.+.++-||.+.  ..+  +...  ..-......++|. .+.    .++.|..|
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence            4578899764466654          224455666543  222  1111  1223456678883 333    47889999


Q ss_pred             CcEEEEEcCCC---ce----eeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeee---eCCCcEEEEec
Q psy11885         78 CTLKMFDFNTQ---TE----TVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNY---TQPDKVFTMSL  146 (327)
Q Consensus        78 g~i~vwd~~~~---~~----~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~---~~~~~~~~~~~  146 (327)
                      |.|.+||...-   ..    .....|+++|..|+|++.. ++|++|+.||.|.+||+..-+.=.+.   .....+.++++
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            99999997652   21    1345799999999999865 59999999999999999764432222   12445677777


Q ss_pred             CC---CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCC-ceEEEeec-CeEEEEEccCCcccccceee
Q psy11885        147 CG---EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIE-GRAAVEYLDTGPEMQKMKYA  221 (327)
Q Consensus       147 ~~---~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~~~  221 (327)
                      +.   ..|++++.++.+.|||+|..+.+.......-..+...+.++|+.- -+++++.+ +.-.|..||.+-..... ..
T Consensus       170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~-k~  248 (1049)
T KOG0307|consen  170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL-KI  248 (1049)
T ss_pred             chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch-hh
Confidence            74   358899999999999999876554333332223345678888763 34444444 33466678744321111 12


Q ss_pred             eeeeeeccCCeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        222 FKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       222 ~~~h~~~~~~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      +.+|.         ..|-++.|.+.+ .+|+|.+.|+.|.+|+.++++.+..+......+..+.|.|..--+.++.+.+.
T Consensus       249 ~~~H~---------~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdg  319 (1049)
T KOG0307|consen  249 LEGHQ---------RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDG  319 (1049)
T ss_pred             hcccc---------cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecc
Confidence            23443         247899999866 88899999999999999999999999876678999999998774444444433

>KOG0290|consensus

Probab=99.74  E-value=5.1e-16  Score=126.05  Aligned_cols=275  Identities=18%  Similarity=0.277  Sum_probs=174.2

Q ss_pred             CeeEEEEe--cCCCcEEEEEEC----CCcEEEEECC--CCeEEE--EecCCCceeeEEEe-CC----ceEEEEecCCcEE
Q psy11885         17 GITAVKFA--PNSNQFLLASSW----DCNVSLYDIT--NNNLRL--KYAHSDPVLDCCFQ-DA----VHSFSGGLDCTLK   81 (327)
Q Consensus        17 ~I~~i~fs--~~~~~~l~s~~~----d~~i~iwd~~--~~~~~~--~~~h~~~v~~~~~~-~~----~~~~sgs~Dg~i~   81 (327)
                      .+.++.|+  |+....||.|+.    .+.|.|-.+.  +++...  .+.|..+++-+.|. +.    ..+++.+.| .+|
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D-~LR  124 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD-FLR  124 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC-eEE
Confidence            56788998  334467888874    3667776654  445433  34788899999883 22    233444434 799


Q ss_pred             EEEcCCCcee-----ee-----ecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCce--ee--eeeCCCcEEEEec
Q psy11885         82 MFDFNTQTET-----VI-----GTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRC--VG--NYTQPDKVFTMSL  146 (327)
Q Consensus        82 vwd~~~~~~~-----~~-----~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~--~~--~~~~~~~~~~~~~  146 (327)
                      +|.+......     .+     ..+..+++++.|.. |.+++.++|-|-+-.+||++++..  ++  -+.+...++.+.+
T Consensus       125 lWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf  204 (364)
T KOG0290|consen  125 LWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAF  204 (364)
T ss_pred             EEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEe
Confidence            9998743211     12     23567899999985 678999999999999999998733  22  2334455677666


Q ss_pred             CC---CeEEEEeCCCeEEEEECCCCccceeeecccce-eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeee
Q psy11885        147 CG---EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK-FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF  222 (327)
Q Consensus       147 ~~---~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  222 (327)
                      ..   +.|++++.||+||+||+|..++-....+...+ .+...+++++.+..+.+.-..+...|.++|.+-.. .....+
T Consensus       205 ~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-tpva~L  283 (364)
T KOG0290|consen  205 LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-TPVARL  283 (364)
T ss_pred             ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-cceehh
Confidence            53   56999999999999999987754333333321 12233344444433332222233344445543321 111222


Q ss_pred             eeeeeccCCeeeEEEeeEEEEecC-CCeEEEecCCCeEEEEeCCCcee------eeecCcCCcceEEEEECC-CCCEEEE
Q psy11885        223 KCHRIKEDGIEKIYPVNAISFHQE-YNTFATGGSDGYVNIWDGFNKKR------LCQFHRYDTGITSLCFSY-DGNVLAI  294 (327)
Q Consensus       223 ~~h~~~~~~~~~~~~v~~v~~spd-~~~lasgs~dg~i~iWd~~~~~~------~~~~~~~~~~v~~l~fsp-dg~~la~  294 (327)
                      ..|         ...|+.++|.|. ...|+|+|+|..+-|||+...-.      +..+ ..+..|+.++|+| .+..||.
T Consensus       284 ~~H---------~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai  353 (364)
T KOG0290|consen  284 RNH---------QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAI  353 (364)
T ss_pred             hcC---------cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEE
Confidence            333         347999999995 46899999999999999875322      1111 2445799999996 5678888


Q ss_pred             EEccccccC
Q psy11885        295 ACSYNYELE  303 (327)
Q Consensus       295 ~~~~~~~~~  303 (327)
                      ..+.-+++.
T Consensus       354 ~~~kkleiL  362 (364)
T KOG0290|consen  354 CFGKKLEIL  362 (364)
T ss_pred             EecCeeeEE
Confidence            766555543

>KOG1517|consensus

Probab=99.74  E-value=7.9e-16  Score=143.70  Aligned_cols=268  Identities=17%  Similarity=0.203  Sum_probs=172.8

Q ss_pred             eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec----CCCceeeEEEe---CCceEEEEecCCcEEEEEc-CC--
Q psy11885         18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA----HSDPVLDCCFQ---DAVHSFSGGLDCTLKMFDF-NT--   87 (327)
Q Consensus        18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----h~~~v~~~~~~---~~~~~~sgs~Dg~i~vwd~-~~--   87 (327)
                      -..+.|+|= ...+++++....|++||.+.++....+.    ....|..+.+-   +...+++|+.||.||+|+- ..  
T Consensus      1067 pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1067 PKTLKFHPF-EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CceeeecCC-CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            456888884 3467777666799999999988654442    34568888873   5678899999999999962 22  


Q ss_pred             Ccee-e-----eecC----CccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC--CcEEEEec---CCCeEE
Q psy11885         88 QTET-V-----IGTH----DQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP--DKVFTMSL---CGEKFV  152 (327)
Q Consensus        88 ~~~~-~-----~~~h----~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~--~~~~~~~~---~~~~~~  152 (327)
                      ++.+ +     +.++    .+.-.-++|..+...|+++|.-..||+||...-.+...+...  ..+.+++.   .|+.++
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence            1111 1     1111    111245678877778888887899999999765555554432  22344443   378899


Q ss_pred             EEeCCCeEEEEECCCCcc---ceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceeeeeeeeec
Q psy11885        153 VGTAGRKVCIWDLRNMGY---IMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK  228 (327)
Q Consensus       153 ~~~~d~~v~iwD~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~  228 (327)
                      +|..||.||+||.|....   +...+.+.-...+..+.+.+.+- .++.++.+|.+.+  ||..............|.  
T Consensus      1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~--~DlR~~~~e~~~~iv~~~-- 1301 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL--LDLRMSSKETFLTIVAHW-- 1301 (1387)
T ss_pred             EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE--EecccCcccccceeeecc--
Confidence            999999999999986432   22223333222234455555443 4788888888776  444332111111111110  


Q ss_pred             cCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcC-------CcceEEEEECCCCCEEEEEE
Q psy11885        229 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY-------DTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       229 ~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~-------~~~v~~l~fspdg~~la~~~  296 (327)
                      +.+    +.++++..|++..++|+|+. +.|+||++. |+.+..++.+       ...+.||+|+|.--+||+|.
T Consensus      1302 ~yG----s~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1302 EYG----SALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred             ccC----ccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence            000    14789999999999999998 999999975 4444443321       12478999999988888885

>KOG1445|consensus

Probab=99.74  E-value=1.5e-16  Score=141.36  Aligned_cols=121  Identities=19%  Similarity=0.367  Sum_probs=94.8

Q ss_pred             eecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe---E---EEEecCCC-ceeeEEEe-CCceEEEEecCCc
Q psy11885          8 YSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN---L---RLKYAHSD-PVLDCCFQ-DAVHSFSGGLDCT   79 (327)
Q Consensus         8 ~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~---~---~~~~~h~~-~v~~~~~~-~~~~~~sgs~Dg~   79 (327)
                      +..-..|.+.|+.+.|+|=.+.+||++|.|..|+||.+..+-   +   ....+|.. .|-++.|+ ...-++..+.-|.
T Consensus        72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~  151 (1012)
T KOG1445|consen   72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS  151 (1012)
T ss_pred             cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence            344466788999999999666799999999999999997432   1   12234544 45677885 3333444445899


Q ss_pred             EEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC
Q psy11885         80 LKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS  128 (327)
Q Consensus        80 i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~  128 (327)
                      +.+||+.+++.. .+.+|...|.+..|+.||..|+++..|..||+||.+.
T Consensus       152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            999999988764 4778999999999999999999999999999999875

>KOG0303|consensus

Probab=99.74  E-value=1.7e-16  Score=133.69  Aligned_cols=203  Identities=17%  Similarity=0.293  Sum_probs=144.6

Q ss_pred             eecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--------EEEEecCCCceeeEEEe--CCceEEEEecC
Q psy11885          8 YSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--------LRLKYAHSDPVLDCCFQ--DAVHSFSGGLD   77 (327)
Q Consensus         8 ~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~h~~~v~~~~~~--~~~~~~sgs~D   77 (327)
                      +-+--.|.+.|..++|.|-++..+|+||.|.+|.||++..+.        ...+.+|+..|-.+.|+  -.+.|+|+|.|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            334456889999999999877899999999999999986543        23456899999999995  45678899999


Q ss_pred             CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC----cEEEEecCCCeEEE
Q psy11885         78 CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD----KVFTMSLCGEKFVV  153 (327)
Q Consensus        78 g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~----~~~~~~~~~~~~~~  153 (327)
                      .+|.+|++.++...+.-.|.+-|.++.|+.+|.++++...|.+||+||.++++.+.+-..+.    .-..+..+++.+-+
T Consensus       154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT  233 (472)
T ss_pred             ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence            99999999999876555599999999999999999999999999999999999887653221    11233445664444


Q ss_pred             Ee---CCCeEEEEECCCCccceeeecccceeeeEE-eEEeeCCCceEEEeecCeEEEEEccCC
Q psy11885        154 GT---AGRKVCIWDLRNMGYIMQRRESSLKFQTRC-IKCFPNKQGYVLSSIEGRAAVEYLDTG  212 (327)
Q Consensus       154 ~~---~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~  212 (327)
                      |.   .++.+-+||-.+.+.....  ..+...... +=|...+..++--+..|+..|++++..
T Consensus       234 Gfsr~seRq~aLwdp~nl~eP~~~--~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNNLEEPIAL--QELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             ccccccccceeccCcccccCccee--EEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence            43   5678999998876532111  111111111 112333344444455566666666543

>KOG2919|consensus

Probab=99.73  E-value=3.6e-15  Score=122.84  Aligned_cols=272  Identities=16%  Similarity=0.282  Sum_probs=175.1

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--------------EEEEecCCCceeeEEE-e-------CCceE
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--------------LRLKYAHSDPVLDCCF-Q-------DAVHS   71 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--------------~~~~~~h~~~v~~~~~-~-------~~~~~   71 (327)
                      +++=...+.|+|+ +.-+++-+.|..+.+|++...-              +...+.....|...+| +       +..+.
T Consensus        48 p~nf~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~  126 (406)
T KOG2919|consen   48 PLNFLKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF  126 (406)
T ss_pred             chhhhccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence            4455668999996 4678888999999999984211              1112233455666665 2       34577


Q ss_pred             EEEecCCcEEEEEcCCCceee-e--ecCCc---cEEEEEEeCCCCEEEEEECCCeEEEEeC-CCCc-e-e-eeee-----
Q psy11885         72 FSGGLDCTLKMFDFNTQTETV-I--GTHDQ---PIRAVEYSDEVNCILTGSWDTSVKMWDP-RSSR-C-V-GNYT-----  136 (327)
Q Consensus        72 ~sgs~Dg~i~vwd~~~~~~~~-~--~~h~~---~V~~l~~~~~~~~l~sgs~d~~i~lwdl-~~~~-~-~-~~~~-----  136 (327)
                      ++.+.|.-|++||.-+++... .  -.|-.   ...+|+|+|||..|+.|. .+.||+||+ |.|. | + .++.     
T Consensus       127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~g  205 (406)
T KOG2919|consen  127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFG  205 (406)
T ss_pred             eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccc
Confidence            889999999999998876542 1  12332   356899999999888765 588999999 4443 1 1 1111     


Q ss_pred             CCCcEEEEecC---CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCc
Q psy11885        137 QPDKVFTMSLC---GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP  213 (327)
Q Consensus       137 ~~~~~~~~~~~---~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  213 (327)
                      +.+.+.+++++   ...+++++..+++-|+.-..+..+....  .....+..+.+.++++.+.+++-.... |..||.+.
T Consensus       206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg--gh~gGvThL~~~edGn~lfsGaRk~dk-Il~WDiR~  282 (406)
T KOG2919|consen  206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG--GHGGGVTHLQWCEDGNKLFSGARKDDK-ILCWDIRY  282 (406)
T ss_pred             ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec--ccCCCeeeEEeccCcCeecccccCCCe-EEEEeehh
Confidence            12333334443   3468889999988887655544322111  222234667788888877777654333 23455443


Q ss_pred             ccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC-ceeeeecCcCCcceEEEEECCCCCEE
Q psy11885        214 EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN-KKRLCQFHRYDTGITSLCFSYDGNVL  292 (327)
Q Consensus       214 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~-~~~~~~~~~~~~~v~~l~fspdg~~l  292 (327)
                      . ....+++..|..  +..++   | -....|++++||+|+.||.|++||+.+ +..+..+..+...|+.++++|-=..+
T Consensus       283 ~-~~pv~~L~rhv~--~TNQR---I-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpil  355 (406)
T KOG2919|consen  283 S-RDPVYALERHVG--DTNQR---I-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPIL  355 (406)
T ss_pred             c-cchhhhhhhhcc--Cccce---E-EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccccee
Confidence            2 223333333322  11111   1 134569999999999999999999988 56566677777889999999987777


Q ss_pred             EEEEc
Q psy11885        293 AIACS  297 (327)
Q Consensus       293 a~~~~  297 (327)
                      |++++
T Consensus       356 atssG  360 (406)
T KOG2919|consen  356 ATSSG  360 (406)
T ss_pred             eeccC
Confidence            77754

>KOG1034|consensus

Probab=99.73  E-value=5e-17  Score=133.86  Aligned_cols=199  Identities=25%  Similarity=0.393  Sum_probs=143.3

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe----cCCCceeeEEEe-CCceEEEEecCCcEEEEEcC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY----AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      -.|.+.|+.|+|+|...++++++|.|.+||+||+.++.+...+    +|-+.|+++.|+ ++..++|+|+|.++++|+++
T Consensus       132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            4577899999999988889999999999999999999976655    499999999996 88899999999999999987


Q ss_pred             CCce-----e------------------------eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCC-CCcee----
Q psy11885         87 TQTE-----T------------------------VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR-SSRCV----  132 (327)
Q Consensus        87 ~~~~-----~------------------------~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~-~~~~~----  132 (327)
                      ..+.     .                        ....|..+|-++.|-  |++++|-|-++.|..|... -.+.+    
T Consensus       212 ~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vk  289 (385)
T KOG1034|consen  212 VKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVK  289 (385)
T ss_pred             hhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccC
Confidence            3210     0                        011355666666665  3789999999999999872 12221    


Q ss_pred             ---------eeeeCCC-c----EEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEE
Q psy11885        133 ---------GNYTQPD-K----VFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS  198 (327)
Q Consensus       133 ---------~~~~~~~-~----~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (327)
                               .++..+. .    -+++.+.++.++.|...|+|.+||+++-+..       ..   ..          ++ 
T Consensus       290 p~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~-------~~---tt----------l~-  348 (385)
T KOG1034|consen  290 PPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP-------KC---TT----------LT-  348 (385)
T ss_pred             CCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-------cC---ce----------EE-
Confidence                     1222222 1    1345556777888889999999999864311       00   00          00 


Q ss_pred             eecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885        199 SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       199 ~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~  265 (327)
                                                |...      ...|...+|+-|++.|+...+|++|.-||..
T Consensus       349 --------------------------~s~~------~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  349 --------------------------HSKS------GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             --------------------------eccc------cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence                                      0000      0136678999999999999999999999853

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=2.7e-14  Score=126.06  Aligned_cols=264  Identities=9%  Similarity=0.048  Sum_probs=158.1

Q ss_pred             EEEEEECCCcEEEEECCC-CeE--EEEecCCCceeeEEEe-CCceEEEE-ecCCcEEEEEcCC-Cceeeee--cCCccEE
Q psy11885         30 FLLASSWDCNVSLYDITN-NNL--RLKYAHSDPVLDCCFQ-DAVHSFSG-GLDCTLKMFDFNT-QTETVIG--THDQPIR  101 (327)
Q Consensus        30 ~l~s~~~d~~i~iwd~~~-~~~--~~~~~h~~~v~~~~~~-~~~~~~sg-s~Dg~i~vwd~~~-~~~~~~~--~h~~~V~  101 (327)
                      ++++...|+.|++||+.+ +++  .....+......++++ ++.+++.+ ..++.|.+|+++. +......  .......
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            445557799999999964 442  2333444556677885 67777655 4588999999973 3322222  1233457


Q ss_pred             EEEEeCCCCEEEEEEC-CCeEEEEeCCCCc----eeeeeeC--CCcEEEEecCCCeEEEE-eCCCeEEEEECCCCcccee
Q psy11885        102 AVEYSDEVNCILTGSW-DTSVKMWDPRSSR----CVGNYTQ--PDKVFTMSLCGEKFVVG-TAGRKVCIWDLRNMGYIMQ  173 (327)
Q Consensus       102 ~l~~~~~~~~l~sgs~-d~~i~lwdl~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~-~~d~~v~iwD~~~~~~~~~  173 (327)
                      .++++|+++++++++. ++.|.+||+.+..    .+..+..  ......++++++.++++ ..++.|.+||+++.+.+..
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            8999999999988765 8999999996432    2222222  12234567778777654 4568999999986432211


Q ss_pred             e----ecccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC
Q psy11885        174 R----RESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN  248 (327)
Q Consensus       174 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~  248 (327)
                      .    ........++.+.++|+++.++++.. ++.+.++.++...........+....  .. .........+.++|+++
T Consensus       164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p--~~-~~~~~~~~~i~~~pdg~  240 (330)
T PRK11028        164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP--AD-FSDTRWAADIHITPDGR  240 (330)
T ss_pred             cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC--Cc-CCCCccceeEEECCCCC
Confidence            0    00011223466788888877666554 56666655542211111111111100  00 00001123688999999


Q ss_pred             eEEEecC-CCeEEEEeCCCce----eeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        249 TFATGGS-DGYVNIWDGFNKK----RLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       249 ~lasgs~-dg~i~iWd~~~~~----~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      +|+++.. ++.|.+|++.+..    .+...... ...+.++|+|||++|+++..
T Consensus       241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             EEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEc
Confidence            9988854 6899999985432    22222211 23467999999999999875

>KOG0644|consensus

Probab=99.72  E-value=2.1e-17  Score=150.61  Aligned_cols=256  Identities=18%  Similarity=0.283  Sum_probs=170.6

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-   90 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-   90 (327)
                      |-+.|.|+.|.. .+.++++|+.|..++||..+++.+ ....+|.+.++.++.+ .+..++++|.|..|++|.+..+.+ 
T Consensus       189 H~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv  267 (1113)
T KOG0644|consen  189 HRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV  267 (1113)
T ss_pred             hhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence            667899999999 568999999999999999988874 5556899999999885 566778999999999999988765 


Q ss_pred             eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeee------eCCCcE--EEEecCCCeEEEEeCCCeEEE
Q psy11885         91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY------TQPDKV--FTMSLCGEKFVVGTAGRKVCI  162 (327)
Q Consensus        91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~d~~v~i  162 (327)
                      .++.+|++.|++++|+|-.    +.+.||++++||.+- ......      .....+  ..+...+..+++++.|+.-+.
T Consensus       268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n  342 (1113)
T KOG0644|consen  268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARN  342 (1113)
T ss_pred             HHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCccccc
Confidence            4789999999999999843    778999999999871 111111      111112  223334677999999999988


Q ss_pred             EECCCCccceeeecccceeeeEEeEEeeCCCceE-EEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885        163 WDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI  241 (327)
Q Consensus       163 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  241 (327)
                      |.+.....    ....+.+.    ....+.+.++ ++-..-..++|....+...         |..    .+|...+..+
T Consensus       343 ~e~~~l~~----~~~~lif~----t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~---------H~l----~ghsd~~yvL  401 (1113)
T KOG0644|consen  343 HEFEQLAW----RSNLLIFV----TRSSDLSSIVVTARNDHRLCVWNLYTGQLL---------HNL----MGHSDEVYVL  401 (1113)
T ss_pred             chhhHhhh----hccceEEE----eccccccccceeeeeeeEeeeeecccchhh---------hhh----cccccceeee
Confidence            87653211    00000000    0000111111 1111111223222222111         111    1222357789


Q ss_pred             EEecCCCeE-EEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885        242 SFHQEYNTF-ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       242 ~~spd~~~l-asgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~  296 (327)
                      .+||-...+ .+++.||..-|||+-.|..++........+..-+||+||..++...
T Consensus       402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd  457 (1113)
T KOG0644|consen  402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD  457 (1113)
T ss_pred             eecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCC
Confidence            999976665 5999999999999988877766543345566779999999887663

>KOG2445|consensus

Probab=99.72  E-value=2.2e-15  Score=123.23  Aligned_cols=198  Identities=19%  Similarity=0.262  Sum_probs=131.0

Q ss_pred             cCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCcee-----eeecCCccEEEEEEeC--CCCEEEEEECCCeEEEEeC
Q psy11885         55 AHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTET-----VIGTHDQPIRAVEYSD--EVNCILTGSWDTSVKMWDP  126 (327)
Q Consensus        55 ~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~-----~~~~h~~~V~~l~~~~--~~~~l~sgs~d~~i~lwdl  126 (327)
                      .|++-|.++.| ..|..+++||.|++|++||.++....     .-..|++.|..+.|.+  =|+.+++++.|+++++|.-
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            58888999999 58999999999999999998655432     2357999999999964  3899999999999999975


Q ss_pred             CCC-------ceee--eee-CCCcEEEEecC----CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCC
Q psy11885        127 RSS-------RCVG--NYT-QPDKVFTMSLC----GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNK  192 (327)
Q Consensus       127 ~~~-------~~~~--~~~-~~~~~~~~~~~----~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (327)
                      ...       +.+.  ++. ....++.+.++    |-.+++++.||.+|||+.-......                    
T Consensus        91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs--------------------  150 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS--------------------  150 (361)
T ss_pred             cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc--------------------
Confidence            211       1111  121 23345555554    5568999999999999875421100                    


Q ss_pred             CceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC---CCeEEEecCC-----CeEEEEeC
Q psy11885        193 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE---YNTFATGGSD-----GYVNIWDG  264 (327)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd---~~~lasgs~d-----g~i~iWd~  264 (327)
                                     .|....+.+.+......         +..+..|+.|+|.   ..+||+|+.+     +.++||..
T Consensus       151 ---------------~W~Lq~Ei~~~~~pp~~---------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~  206 (361)
T KOG2445|consen  151 ---------------QWTLQHEIQNVIDPPGK---------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY  206 (361)
T ss_pred             ---------------cchhhhhhhhccCCccc---------ccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence                           01100000000000000         0113567888864   3578888766     47899975


Q ss_pred             CCce----eeeecCcCCcceEEEEECCC----CCEEEEEE
Q psy11885        265 FNKK----RLCQFHRYDTGITSLCFSYD----GNVLAIAC  296 (327)
Q Consensus       265 ~~~~----~~~~~~~~~~~v~~l~fspd----g~~la~~~  296 (327)
                      .+..    .+..+.+|..+|++|+|+|+    -.+||+||
T Consensus       207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence            4432    34456788899999999996    34788886

>KOG1063|consensus

Probab=99.72  E-value=1.6e-15  Score=135.98  Aligned_cols=287  Identities=16%  Similarity=0.196  Sum_probs=181.1

Q ss_pred             CCCCCCeeEEEEecCCC--cEEEEEECCCcEEEEECCCCe-------------------------EE-------EEecCC
Q psy11885         12 SPPEDGITAVKFAPNSN--QFLLASSWDCNVSLYDITNNN-------------------------LR-------LKYAHS   57 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~--~~l~s~~~d~~i~iwd~~~~~-------------------------~~-------~~~~h~   57 (327)
                      .-|++-|.+++|...++  .+||++|.|..||||.+.-+.                         +.       ...+|.
T Consensus       188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe  267 (764)
T KOG1063|consen  188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE  267 (764)
T ss_pred             eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc
Confidence            56889999999997543  478899999999999863211                         11       113699


Q ss_pred             CceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-----eeeecC---CccEEEEEEeCCCCEEEEEECCCeEEEEeCCC
Q psy11885         58 DPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-----TVIGTH---DQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS  128 (327)
Q Consensus        58 ~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-----~~~~~h---~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~  128 (327)
                      +-|.++-|+ ++..++|+|+|.++.+|.-+.+..     ..++..   ...-...-|+|+++.+++-++-|..++|....
T Consensus       268 DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d  347 (764)
T KOG1063|consen  268 DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD  347 (764)
T ss_pred             cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence            999999996 566899999999999997665532     123322   23456778999999999999999999998332


Q ss_pred             -Cceeee--eeC---CCcEEEEecCCCeEEEEeCCCeEEEEECCCCcc--ceeeecccceeeeEEeEEeeCCCceEEEee
Q psy11885        129 -SRCVGN--YTQ---PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGY--IMQRRESSLKFQTRCIKCFPNKQGYVLSSI  200 (327)
Q Consensus       129 -~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (327)
                       ..+.+.  +..   ..+-+.+++.|+++++.+.|.+-|+|---..+.  ....+.+-+.....|+++.+....++.+..
T Consensus       348 ~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAd  427 (764)
T KOG1063|consen  348 KTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGAD  427 (764)
T ss_pred             ccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccc
Confidence             222222  122   223456677799999999999999974321110  001111112222345544442222222221


Q ss_pred             cCeEEEEEc-----------------------------------------c--CCcc----cccc-e---eeee------
Q psy11885        201 EGRAAVEYL-----------------------------------------D--TGPE----MQKM-K---YAFK------  223 (327)
Q Consensus       201 ~~~~~i~~~-----------------------------------------~--~~~~----~~~~-~---~~~~------  223 (327)
                      +.-.+++..                                         +  .+..    .+.. .   ..+.      
T Consensus       428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed  507 (764)
T KOG1063|consen  428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED  507 (764)
T ss_pred             ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence            111111100                                         0  0000    0000 0   0000      


Q ss_pred             ---eeee---ccCCeeeEEEeeEEEEecCCCeEEEecCCC-----eEEEEeCCCceeeeecCcCCcceEEEEECCCCCEE
Q psy11885        224 ---CHRI---KEDGIEKIYPVNAISFHQEYNTFATGGSDG-----YVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVL  292 (327)
Q Consensus       224 ---~h~~---~~~~~~~~~~v~~v~~spd~~~lasgs~dg-----~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~l  292 (327)
                         .|.+   .+.-++|.+.|.+++.+|+++.+||+....     .|++|+..+=...+.+..|+-.|+.|+|||||++|
T Consensus       508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  508 QLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL  587 (764)
T ss_pred             HHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence               0000   011235667799999999999999987543     58999988766777788999999999999999999


Q ss_pred             EEEEcc
Q psy11885        293 AIACSY  298 (327)
Q Consensus       293 a~~~~~  298 (327)
                      ++.|.+
T Consensus       588 LsvsRD  593 (764)
T KOG1063|consen  588 LSVSRD  593 (764)
T ss_pred             EEeecC
Confidence            999885

>KOG2110|consensus

Probab=99.71  E-value=1.9e-14  Score=120.52  Aligned_cols=219  Identities=18%  Similarity=0.259  Sum_probs=138.7

Q ss_pred             eeeEEEeCCceEE-EEecCCcEEEEEcCCCceeeeecCCccEEEE--EEeCCCCEEEEEECC--CeEEEEeCCCCceeee
Q psy11885         60 VLDCCFQDAVHSF-SGGLDCTLKMFDFNTQTETVIGTHDQPIRAV--EYSDEVNCILTGSWD--TSVKMWDPRSSRCVGN  134 (327)
Q Consensus        60 v~~~~~~~~~~~~-sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l--~~~~~~~~l~sgs~d--~~i~lwdl~~~~~~~~  134 (327)
                      +....|.....++ .|+.|| .+++..+.... ....-...+.-+  -|+.  .+++..+.+  +.+++.+.+.+..+.+
T Consensus         8 i~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe   83 (391)
T KOG2110|consen    8 INFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICE   83 (391)
T ss_pred             eeeeeeccceeEEEccCCCc-eeEEecCchHH-hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEE
Confidence            3444464333344 455454 57776654322 111111222222  3443  455544444  4589999988888888


Q ss_pred             eeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCC--ceEE--EeecCeEEEEEcc
Q psy11885        135 YTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ--GYVL--SSIEGRAAVEYLD  210 (327)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~i~~~~  210 (327)
                      +.-+..+.++..+.++++++-.+. |.|+|+++++.+..+.... +......+++++..  .++.  ....|.+.+  ++
T Consensus        84 ~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~-~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l--~d  159 (391)
T KOG2110|consen   84 IFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTP-PNPKGLCALSPNNANCYLAYPGSTTSGDVVL--FD  159 (391)
T ss_pred             EecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccC-CCccceEeeccCCCCceEEecCCCCCceEEE--EE
Confidence            888889999999999999887766 9999999988654433221 11112233444332  2221  122344444  44


Q ss_pred             CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCe-EEEEeCCCceeeeecCcCCc--ceEEEEECC
Q psy11885        211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY-VNIWDGFNKKRLCQFHRYDT--GITSLCFSY  287 (327)
Q Consensus       211 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~-i~iWd~~~~~~~~~~~~~~~--~v~~l~fsp  287 (327)
                      .....  ....+..|.         .++.+++|+|+|.+|||||+.|+ |||+.+.+|+++.+|++...  .|.+|+|||
T Consensus       160 ~~nl~--~v~~I~aH~---------~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~  228 (391)
T KOG2110|consen  160 TINLQ--PVNTINAHK---------GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP  228 (391)
T ss_pred             cccce--eeeEEEecC---------CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence            32211  112223443         47899999999999999999997 69999999999999976554  489999999


Q ss_pred             CCCEEEEEEc
Q psy11885        288 DGNVLAIACS  297 (327)
Q Consensus       288 dg~~la~~~~  297 (327)
                      |+++|+.++.
T Consensus       229 ds~~L~~sS~  238 (391)
T KOG2110|consen  229 DSQFLAASSN  238 (391)
T ss_pred             CCCeEEEecC
Confidence            9999998873

>KOG0270|consensus

Probab=99.71  E-value=4e-16  Score=133.20  Aligned_cols=157  Identities=18%  Similarity=0.252  Sum_probs=125.6

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-CCCceeeEEEe--CCceEEEEecCCcEEEEEcCCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      +.|.+.|.+++|...-...||+||.|.+|++||+.++++..... |.++|.++.|+  ....+++||.|++|++.|.+..
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            45778888999998767799999999999999999999876665 78899999994  6778999999999999998742


Q ss_pred             ce-eeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCC-ceeeeeeCCC-cEEEEecC---CCeEEEEeCCCeEE
Q psy11885         89 TE-TVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSS-RCVGNYTQPD-KVFTMSLC---GEKFVVGTAGRKVC  161 (327)
Q Consensus        89 ~~-~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~-~~~~~~~~~~-~~~~~~~~---~~~~~~~~~d~~v~  161 (327)
                      .. ..--.-.+.|-.++|.+.. ..+++++.||+|+-+|+|.. ++++++..+. .+.+++.+   +..+++++.|+.|+
T Consensus       320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk  399 (463)
T KOG0270|consen  320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK  399 (463)
T ss_pred             cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence            11 1111235678899998754 66788899999999999985 8888887654 34444443   56789999999999


Q ss_pred             EEECCCC
Q psy11885        162 IWDLRNM  168 (327)
Q Consensus       162 iwD~~~~  168 (327)
                      +|++...
T Consensus       400 lw~~~~~  406 (463)
T KOG0270|consen  400 LWKFDVD  406 (463)
T ss_pred             EEeecCC
Confidence            9998753

>KOG4328|consensus

Probab=99.71  E-value=8.5e-16  Score=131.66  Aligned_cols=230  Identities=15%  Similarity=0.178  Sum_probs=150.9

Q ss_pred             cCCCceeeEEEeC---CceEEEEecCCcEEEEEcCCCce-----eeeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEe
Q psy11885         55 AHSDPVLDCCFQD---AVHSFSGGLDCTLKMFDFNTQTE-----TVIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWD  125 (327)
Q Consensus        55 ~h~~~v~~~~~~~---~~~~~sgs~Dg~i~vwd~~~~~~-----~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwd  125 (327)
                      -+..+|.+++|++   ...+++|+.-|.|-+||+.++.+     ..+..|..+|.++.|+|. ...+++.|+||+||+=|
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D  263 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD  263 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence            3677899999952   36788999999999999964322     345679999999999985 47899999999999999


Q ss_pred             CCCCceeeeeeC--CCcE-EEEec--CCCeEEEEeCCCeEEEEECCCCcc-ceeeecccceeeeEEeEEeeCC-CceEEE
Q psy11885        126 PRSSRCVGNYTQ--PDKV-FTMSL--CGEKFVVGTAGRKVCIWDLRNMGY-IMQRRESSLKFQTRCIKCFPNK-QGYVLS  198 (327)
Q Consensus       126 l~~~~~~~~~~~--~~~~-~~~~~--~~~~~~~~~~d~~v~iwD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  198 (327)
                      ++.+...-.+..  .... ..+.+  ....++.+..=|...+||+|+.+. ....+.+..  -++.++++|-. ..++++
T Consensus       264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP~~p~~laT~  341 (498)
T KOG4328|consen  264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNPVCPWFLATA  341 (498)
T ss_pred             ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCCCCchheeec
Confidence            987532222221  1111 12222  233455555545899999998764 212222222  34677888855 456778


Q ss_pred             eecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeC----CCceeeeecC
Q psy11885        199 SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG----FNKKRLCQFH  274 (327)
Q Consensus       199 ~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~----~~~~~~~~~~  274 (327)
                      +.++..+|  ||......+..-.+       ....|..+|++..|||++-.|++.+.|.+|+|||.    ..-..+..+.
T Consensus       342 s~D~T~kI--WD~R~l~~K~sp~l-------st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~  412 (498)
T KOG4328|consen  342 SLDQTAKI--WDLRQLRGKASPFL-------STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP  412 (498)
T ss_pred             ccCcceee--eehhhhcCCCCcce-------ecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence            88888877  55443222211000       11234457999999999999999999999999997    3333333331


Q ss_pred             ---cCCc--ceEEEEECCCCCEEEEE
Q psy11885        275 ---RYDT--GITSLCFSYDGNVLAIA  295 (327)
Q Consensus       275 ---~~~~--~v~~l~fspdg~~la~~  295 (327)
                         .+..  ....-+|.||..++++|
T Consensus       413 Hn~~t~RwlT~fKA~W~P~~~li~vg  438 (498)
T KOG4328|consen  413 HNNRTGRWLTPFKAAWDPDYNLIVVG  438 (498)
T ss_pred             ccCcccccccchhheeCCCccEEEEe
Confidence               1111  13456899999999887

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.70  E-value=1.6e-13  Score=123.48  Aligned_cols=270  Identities=23%  Similarity=0.370  Sum_probs=181.2

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--EEEEecCC-CceeeEEE-e-CCc-eEEEE-ecCCcEEEEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--LRLKYAHS-DPVLDCCF-Q-DAV-HSFSG-GLDCTLKMFD   84 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~h~-~~v~~~~~-~-~~~-~~~sg-s~Dg~i~vwd   84 (327)
                      ..++..|.++.|.+. +..++.++.|+.+.+|+...+.  ......+. ..+..+.+ . ++. .++.. ..|+.+++|+
T Consensus        62 ~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  140 (466)
T COG2319          62 RGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD  140 (466)
T ss_pred             eeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence            467789999999995 5788888899999999998875  33333423 24555554 3 344 34443 4499999999


Q ss_pred             cCC--CceeeeecCCccEEEEEEeCCCCEEEEEEC-CCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCC-eEEEEeCC
Q psy11885         85 FNT--QTETVIGTHDQPIRAVEYSDEVNCILTGSW-DTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGE-KFVVGTAG  157 (327)
Q Consensus        85 ~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~-d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~-~~~~~~~d  157 (327)
                      +..  .....+..|...|..++|++++..+++++. |+.+++|++..++.+..+..+ ..+  ..+.+.+. .+++++.|
T Consensus       141 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  220 (466)
T COG2319         141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD  220 (466)
T ss_pred             ecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence            987  344567789999999999999998888885 999999999987777666642 233  34444555 34444899


Q ss_pred             CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885        158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP  237 (327)
Q Consensus       158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  237 (327)
                      +.|++||.+............. ... ...+.+++..++.++.++...++.......  .. ..+..         |...
T Consensus       221 ~~i~~wd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~-~~~~~---------~~~~  286 (466)
T COG2319         221 GTIRLWDLSTGKLLRSTLSGHS-DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LL-RTLSG---------HSSS  286 (466)
T ss_pred             CcEEEEECCCCcEEeeecCCCC-cce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EE-EEEec---------CCcc
Confidence            9999999885443321111111 111 114566665555566666666644332221  01 11111         1236


Q ss_pred             eeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC--cCCcceEEEEECCCCCEEEEEE
Q psy11885        238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH--RYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~--~~~~~v~~l~fspdg~~la~~~  296 (327)
                      +.++.|+|++..+++++.|+.+++||...........  .|...+..++|++++..++.+.
T Consensus       287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (466)
T COG2319         287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG  347 (466)
T ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence            8888999999999999999899999988776665554  6666789999954436666664

>KOG0649|consensus

Probab=99.69  E-value=2.6e-14  Score=113.53  Aligned_cols=261  Identities=16%  Similarity=0.188  Sum_probs=162.7

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCC---------CeE--EEEecCCCceeeEEEeCCceEEEEecCCcEEEEEc
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITN---------NNL--RLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~---------~~~--~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~   85 (327)
                      .|.+-+++| ..++|++|..+|.|.+..+++         ++.  ....+|.+++..++|.+ ..+++|+ ||.|+-|.-
T Consensus        12 tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-DFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-hheeecc-CceEEEeee
Confidence            466678899 578999999999999998752         232  22347999999999984 4677777 699999875


Q ss_pred             CCCce----e-----eeecCC-----ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEE-EEe--cCC
Q psy11885         86 NTQTE----T-----VIGTHD-----QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVF-TMS--LCG  148 (327)
Q Consensus        86 ~~~~~----~-----~~~~h~-----~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~-~~~--~~~  148 (327)
                      +....    +     ..+.|.     ..|+++-..|..+-++.++-|+.+.-||+++|+..+++..+...+ ++.  ...
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~  168 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN  168 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence            43211    1     122233     357888888888888888899999999999999888888765432 222  234


Q ss_pred             CeEEEEeCCCeEEEEECCCCccceeeecccceeeeE------EeEEeeCCCceEEEeecCeEEEEEccCCcccccceeee
Q psy11885        149 EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTR------CIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF  222 (327)
Q Consensus       149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  222 (327)
                      ..+++|++||++|+||.++.+.+..+.....+.-.+      ..+..-+ ...++...+....+|.+-..+  ....+.+
T Consensus       169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~-edWlvCGgGp~lslwhLrsse--~t~vfpi  245 (325)
T KOG0649|consen  169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN-EDWLVCGGGPKLSLWHLRSSE--STCVFPI  245 (325)
T ss_pred             cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc-CceEEecCCCceeEEeccCCC--ceEEEec
Confidence            569999999999999999988764433222111000      0111111 122232233333443332222  2222222


Q ss_pred             eeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        223 KCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       223 ~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      ..            ++..+.|-  ...++++++.+.|.-|.+. |.....+...+..+++..|+..--.+.+..++
T Consensus       246 pa------------~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~  306 (325)
T KOG0649|consen  246 PA------------RVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGF  306 (325)
T ss_pred             cc------------ceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEeccc
Confidence            22            23445664  3468888899999999864 45444454444457777666554455554443

>KOG4378|consensus

Probab=99.69  E-value=8.6e-16  Score=132.94  Aligned_cols=258  Identities=16%  Similarity=0.153  Sum_probs=161.0

Q ss_pred             EEEECCCcEEEEECCCCeEEEEecCC---CceeeEEEeCCceEE--EEecCCcEEEEEcCCCcee--eeec-CCccEEEE
Q psy11885         32 LASSWDCNVSLYDITNNNLRLKYAHS---DPVLDCCFQDAVHSF--SGGLDCTLKMFDFNTQTET--VIGT-HDQPIRAV  103 (327)
Q Consensus        32 ~s~~~d~~i~iwd~~~~~~~~~~~h~---~~v~~~~~~~~~~~~--sgs~Dg~i~vwd~~~~~~~--~~~~-h~~~V~~l  103 (327)
                      .+++...++++||+...+....+-|.   -.+.+++|+..+.++  +.+.|..+++|.-......  .+.. ..+.-.||
T Consensus         6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv   85 (673)
T KOG4378|consen    6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV   85 (673)
T ss_pred             eeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence            33444567999999876644333222   237888887555444  5566889999976554221  1111 11122333


Q ss_pred             EEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEEEEe--cCCCeEEEEeCCCeEEEEECCCCccceeeecccce
Q psy11885        104 EYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVFTMS--LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK  180 (327)
Q Consensus       104 ~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~  180 (327)
                      +......++++|+..++|+|||++...+.+.+..+. .+..+.  +...++++++..|.|-|-.+.+....... ...-.
T Consensus        86 ~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f-~~~sg  164 (673)
T KOG4378|consen   86 ACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF-TIDSG  164 (673)
T ss_pred             hhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce-ecCCC
Confidence            333344789999999999999999655555555543 344444  45678999999999999988765421111 11111


Q ss_pred             eeeEEeEEeeCCCce-EEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC-CeEEEecCCCe
Q psy11885        181 FQTRCIKCFPNKQGY-VLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGY  258 (327)
Q Consensus       181 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~-~~lasgs~dg~  258 (327)
                      ...+.+.+++....+ .+++.+|.+.  .||...... ......         .|-.|...|+|+|.. .+|++-+.|..
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~Vt--lwDv~g~sp-~~~~~~---------~HsAP~~gicfspsne~l~vsVG~Dkk  232 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVT--LWDVQGMSP-IFHASE---------AHSAPCRGICFSPSNEALLVSVGYDKK  232 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEE--EEeccCCCc-ccchhh---------hccCCcCcceecCCccceEEEecccce
Confidence            123556667665433 3344445544  466433211 111112         233477889999965 46789999999


Q ss_pred             EEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccC
Q psy11885        259 VNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELE  303 (327)
Q Consensus       259 i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~  303 (327)
                      |.+||....+....+ .++.|..+|+|+|+|.+|++|.+.+..+.
T Consensus       233 i~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~  276 (673)
T KOG4378|consen  233 INIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIA  276 (673)
T ss_pred             EEEeeccccccccee-eecCCcceeeecCCceEEEeecCCceEEE
Confidence            999999876555444 35668899999999999999987544433

>KOG0771|consensus

Probab=99.69  E-value=5.2e-16  Score=131.81  Aligned_cols=195  Identities=21%  Similarity=0.269  Sum_probs=125.9

Q ss_pred             eeEEEe-CCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC
Q psy11885         61 LDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP  138 (327)
Q Consensus        61 ~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~  138 (327)
                      ..++|. ++..+++|+.||++|+|+..+... .....|...|.+|.|+|||+.|++-+.| ..++|+++++.+++.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            456774 778999999999999999766543 3456788899999999999999999999 8999999999766655432


Q ss_pred             CcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccc
Q psy11885        139 DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM  218 (327)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  218 (327)
                      ..-..+..|  ++..-...-.+++........                       .+..    -.  +..|..+. ..+.
T Consensus       227 ~k~~~~~~c--RF~~d~~~~~l~laa~~~~~~-----------------------~v~~----~~--~~~w~~~~-~l~~  274 (398)
T KOG0771|consen  227 SKDEMFSSC--RFSVDNAQETLRLAASQFPGG-----------------------GVRL----CD--ISLWSGSN-FLRL  274 (398)
T ss_pred             ccchhhhhc--eecccCCCceEEEEEecCCCC-----------------------ceeE----EE--eeeecccc-ccch
Confidence            211111111  010000001334433321100                       0000    00  01111110 0000


Q ss_pred             eeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC-cCCcceEEEEECCCCCEEEEEEc
Q psy11885        219 KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       219 ~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~-~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      ......+          ..|.+++.++||+++|.|+.||.|-|++..+.+.++..+ .|...|+.|.|+||.+++++-++
T Consensus       275 ~~~~~~~----------~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs  344 (398)
T KOG0771|consen  275 RKKIKRF----------KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS  344 (398)
T ss_pred             hhhhhcc----------CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc
Confidence            0000111          147899999999999999999999999999888777664 56667999999999999998764


Q ss_pred             c
Q psy11885        298 Y  298 (327)
Q Consensus       298 ~  298 (327)
                      +
T Consensus       345 ~  345 (398)
T KOG0771|consen  345 D  345 (398)
T ss_pred             C
Confidence            3

>KOG1334|consensus

Probab=99.67  E-value=1.2e-15  Score=131.86  Aligned_cols=289  Identities=15%  Similarity=0.145  Sum_probs=198.3

Q ss_pred             eecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEE---eCCceEEEEecCCcEEE
Q psy11885          8 YSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCF---QDAVHSFSGGLDCTLKM   82 (327)
Q Consensus         8 ~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~---~~~~~~~sgs~Dg~i~v   82 (327)
                      ..+-..|.+.|+.+.|... +..|++||.|..|.+||+..++....+  +|...|....|   ++...+++.+.||.+|+
T Consensus       135 ~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            3445678999999999995 578999999999999999888754433  68888877777   36678999999999999


Q ss_pred             EEcCC-Cc---eeeeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeee---C--C--CcEEEEe--cC-
Q psy11885         83 FDFNT-QT---ETVIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYT---Q--P--DKVFTMS--LC-  147 (327)
Q Consensus        83 wd~~~-~~---~~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~---~--~--~~~~~~~--~~-  147 (327)
                      =.+.. +.   ...+..|.++|.-++.-|+ ...|+|++.|+.+.-+|++++.....+.   .  +  ....++.  +. 
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            76543 22   2356789999999998875 4779999999999999999875433221   1  1  1223333  32 


Q ss_pred             CCeEEEEeCCCeEEEEECCCCccc------eee----ecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcc---
Q psy11885        148 GEKFVVGTAGRKVCIWDLRNMGYI------MQR----RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE---  214 (327)
Q Consensus       148 ~~~~~~~~~d~~v~iwD~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---  214 (327)
                      ...+++++.|.-+|++|.|....-      .+.    .....+..+.|+++..++..++++-.+-.+.++.-..+..   
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p  373 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP  373 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence            447999999999999999864321      000    0112234456777775655555544444433321111111   


Q ss_pred             ------cccceeeeeeeeeccCCeeeEEEeeEEEE-ecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECC
Q psy11885        215 ------MQKMKYAFKCHRIKEDGIEKIYPVNAISF-HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  287 (327)
Q Consensus       215 ------~~~~~~~~~~h~~~~~~~~~~~~v~~v~~-spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp  287 (327)
                            .......+++|+...       .|..+-| -|...++++||+-|.|.||+-.+++.+..+.+-...|+||.=+|
T Consensus       374 ~~~s~~~~~~k~vYKGHrN~~-------TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP  446 (559)
T KOG1334|consen  374 DPSSPREQYVKRVYKGHRNSR-------TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP  446 (559)
T ss_pred             CCCcchhhccchhhccccccc-------ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence                  122233466776542       3555555 58889999999999999999888887776665444799999999


Q ss_pred             CCCEEEEEEccccccCC
Q psy11885        288 DGNVLAIACSYNYELET  304 (327)
Q Consensus       288 dg~~la~~~~~~~~~~~  304 (327)
                      .--+||+++-+.-..+|
T Consensus       447 ~~PvLAsSGid~DVKIW  463 (559)
T KOG1334|consen  447 HLPVLASSGIDHDVKIW  463 (559)
T ss_pred             CCchhhccCCccceeee
Confidence            99999877654444443

>KOG1587|consensus

Probab=99.66  E-value=7.6e-14  Score=127.63  Aligned_cols=250  Identities=17%  Similarity=0.171  Sum_probs=165.9

Q ss_pred             CcEEEEECCCC-eEEEEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCCCcee-------eeecCCccEEEEEEeC
Q psy11885         38 CNVSLYDITNN-NLRLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQTET-------VIGTHDQPIRAVEYSD  107 (327)
Q Consensus        38 ~~i~iwd~~~~-~~~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~~~-------~~~~h~~~V~~l~~~~  107 (327)
                      +.+.+|++... .....+.-..+|.+++|+  +...++.|..+|.|.+||+..+...       ....|..++..+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            47999999876 345555667789999995  6788899999999999999876431       2357899999999975


Q ss_pred             CC--CEEEEEECCCeEEEEeCCCCce-eee-----e-------eCCCcEEEEec---CCCeEEEEeCCCeEEE---EECC
Q psy11885        108 EV--NCILTGSWDTSVKMWDPRSSRC-VGN-----Y-------TQPDKVFTMSL---CGEKFVVGTAGRKVCI---WDLR  166 (327)
Q Consensus       108 ~~--~~l~sgs~d~~i~lwdl~~~~~-~~~-----~-------~~~~~~~~~~~---~~~~~~~~~~d~~v~i---wD~~  166 (327)
                      +.  ..++|++.||.|..|+++.-.. ...     .       .......++.+   .+..|++|+++|.|.-   ++.+
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            43  4599999999999999865322 111     1       11122333333   3678999999998876   3433


Q ss_pred             CCccceeee---cccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        167 NMGYIMQRR---ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       167 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      ....+....   .........++.++|-...+.+++.+..+++|.-+...   .....+..+         ...|.+++|
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~---~Pl~~~~~~---------~~~v~~vaW  449 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA---SPLLSLDSS---------PDYVTDVAW  449 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC---Ccchhhhhc---------cceeeeeEE
Confidence            322111110   11122345777888888888888888887774433111   111111111         124889999


Q ss_pred             ecCC-CeEEEecCCCeEEEEeCCCc--eeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        244 HQEY-NTFATGGSDGYVNIWDGFNK--KRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       244 spd~-~~lasgs~dg~i~iWd~~~~--~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      ||-. ..||++..||.+.|||+...  +++.+........+.+.|++.|+.||.|...+
T Consensus       450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G  508 (555)
T KOG1587|consen  450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG  508 (555)
T ss_pred             cCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC
Confidence            9976 46788888999999997643  33444433445677889999999999997544

>KOG1007|consensus

Probab=99.66  E-value=2.8e-14  Score=115.96  Aligned_cols=234  Identities=16%  Similarity=0.202  Sum_probs=155.1

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECC-------CcEEEEECCCCeEE----------EEe-cCCCceeeEEE-eCCceEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWD-------CNVSLYDITNNNLR----------LKY-AHSDPVLDCCF-QDAVHSF   72 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d-------~~i~iwd~~~~~~~----------~~~-~h~~~v~~~~~-~~~~~~~   72 (327)
                      -++.++|..|+=+|-+..+|+++-.+       ..+.||.+....-.          .+. .+-+.+.|+.| +++..++
T Consensus        60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kla  139 (370)
T KOG1007|consen   60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLA  139 (370)
T ss_pred             hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeE
Confidence            45678999999999766777765332       35789998643211          111 23457889999 4555555


Q ss_pred             EEecCCcEEEEEcCCCcee---ee----ecCCccEEEEEEeC--CCCEEEEEECCCeEEEEeCCCCceeeeeeCC--CcE
Q psy11885         73 SGGLDCTLKMFDFNTQTET---VI----GTHDQPIRAVEYSD--EVNCILTGSWDTSVKMWDPRSSRCVGNYTQP--DKV  141 (327)
Q Consensus        73 sgs~Dg~i~vwd~~~~~~~---~~----~~h~~~V~~l~~~~--~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~--~~~  141 (327)
                      +-. |..|.+|+++.....   +.    ..|.....+-+|+|  +++.+++. .|++++.||+|+.++...+...  ..+
T Consensus       140 sm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~v  217 (370)
T KOG1007|consen  140 SMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRV  217 (370)
T ss_pred             Eec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhccee
Confidence            554 999999999865431   11    13455667778887  67777765 4799999999998776665542  235


Q ss_pred             EEEecCCC---eEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccc
Q psy11885        142 FTMSLCGE---KFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM  218 (327)
Q Consensus       142 ~~~~~~~~---~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  218 (327)
                      ..+.++++   .+++++.|+.|||||.|..+...+.                                            
T Consensus       218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e--------------------------------------------  253 (370)
T KOG1007|consen  218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE--------------------------------------------  253 (370)
T ss_pred             eeccCCCCceEEEEEcCCCccEEEEeccCCCccccc--------------------------------------------
Confidence            55666654   4889999999999999975421110                                            


Q ss_pred             eeeeeeeeeccCCeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCc-----------------------------e
Q psy11885        219 KYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNK-----------------------------K  268 (327)
Q Consensus       219 ~~~~~~h~~~~~~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~-----------------------------~  268 (327)
                         +..         |..+|+++.|+|.- +.+.+||.|..|.+|....-                             .
T Consensus       254 ---l~~---------HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg  321 (370)
T KOG1007|consen  254 ---LPG---------HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG  321 (370)
T ss_pred             ---cCC---------CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc
Confidence               011         12257778887754 45668888888888843110                             1


Q ss_pred             eeeecCcCCcceEEEEECCCCCEEEEEEccccccC
Q psy11885        269 RLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELE  303 (327)
Q Consensus       269 ~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~  303 (327)
                      .+.++..|+..|.+++||.-.-++.++-+|+..+.
T Consensus       322 ~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  322 QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             ccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence            23355678889999999998888877766655443

>KOG0307|consensus

Probab=99.65  E-value=9.3e-16  Score=144.50  Aligned_cols=239  Identities=17%  Similarity=0.244  Sum_probs=160.0

Q ss_pred             CCeeEEEEecCCCc---EEEEEECCCcEEEEECCC---C-e---EEEEecCCCceeeEEEe--CCceEEEEecCCcEEEE
Q psy11885         16 DGITAVKFAPNSNQ---FLLASSWDCNVSLYDITN---N-N---LRLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        16 ~~I~~i~fs~~~~~---~l~s~~~d~~i~iwd~~~---~-~---~~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vw   83 (327)
                      .+-+.++|.+.+..   ++|.|..||.|-+||...   + +   +.....|+++|..+.|.  .++.++||+.||.|.+|
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            35678999986544   577788999999999765   2 2   22344699999999995  57799999999999999


Q ss_pred             EcCCCceee-e--ecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-----EEEEecCC-CeEEE
Q psy11885         84 DFNTQTETV-I--GTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-----VFTMSLCG-EKFVV  153 (327)
Q Consensus        84 d~~~~~~~~-~--~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~  153 (327)
                      |++.-.... .  ......|.+|.|+.. ...|++++.+|++.+||++..+.+-.+.....     .+.++++. .++++
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~  224 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV  224 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence            998743322 1  123467999999864 45678899999999999998877665544322     34455543 35777


Q ss_pred             EeCCC---eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEE-eecCeEEEEEccCCcccccceeeeeeeeecc
Q psy11885        154 GTAGR---KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE  229 (327)
Q Consensus       154 ~~~d~---~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~  229 (327)
                      ++.|.   .|.+||+|......+... .+.-.+.++.+.+.+..++++ ..++.+.+|...+++.    ...+..     
T Consensus       225 As~dd~~PviqlWDlR~assP~k~~~-~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv----l~~~p~-----  294 (1049)
T KOG0307|consen  225 ASGDDSAPVIQLWDLRFASSPLKILE-GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV----LGELPA-----  294 (1049)
T ss_pred             ecCCCCCceeEeecccccCCchhhhc-ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE----eeecCC-----
Confidence            77665   599999996543222221 111123456666766455544 4456666544444322    222111     


Q ss_pred             CCeeeEEEeeEEEEecCCC-eEEEecCCCeEEEEeCCCce
Q psy11885        230 DGIEKIYPVNAISFHQEYN-TFATGGSDGYVNIWDGFNKK  268 (327)
Q Consensus       230 ~~~~~~~~v~~v~~spd~~-~lasgs~dg~i~iWd~~~~~  268 (327)
                          ...++..+.|.|... .|+.++.||.|-|+.+..+.
T Consensus       295 ----~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  295 ----QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ----CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence                112467789998665 88899999999999976543

>KOG1524|consensus

Probab=99.65  E-value=7.2e-15  Score=128.42  Aligned_cols=247  Identities=19%  Similarity=0.272  Sum_probs=152.9

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEE-ECCCCeEEEEecCCCce-eeEE-E-------eCCceEEEEecCCcEEE
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLY-DITNNNLRLKYAHSDPV-LDCC-F-------QDAVHSFSGGLDCTLKM   82 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iw-d~~~~~~~~~~~h~~~v-~~~~-~-------~~~~~~~sgs~Dg~i~v   82 (327)
                      .|..-|.|+.|+.+ ...+.++ .|+.+.+| |+...+........+-+ +.+- +       -....++-++.||.+.+
T Consensus        12 r~~e~vc~v~w~~~-eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSN-EEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             ccceeEEeeccccc-ceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence            45566789999974 3455544 46655555 55443321111001111 0110 0       12346677788999999


Q ss_pred             EEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-CCcEEEEecCCCeEEEEeCCCeEE
Q psy11885         83 FDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKVFTMSLCGEKFVVGTAGRKVC  161 (327)
Q Consensus        83 wd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~  161 (327)
                      .+-....+..+..|.+.|.+-.|++||.-|+|++.||.|++|. ++|-...++.+ ...+.++                 
T Consensus        90 l~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~-----------------  151 (737)
T KOG1524|consen   90 LNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA-----------------  151 (737)
T ss_pred             ecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE-----------------
Confidence            8765555556778999999999999999999999999999998 44433222221 1222222                 


Q ss_pred             EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885        162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI  241 (327)
Q Consensus       162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  241 (327)
                                               ++.|+.+.++ -+..++..|.-+....  ..+.+  +.|         ..-|-++
T Consensus       152 -------------------------~W~p~S~~vl-~c~g~h~~IKpL~~n~--k~i~W--kAH---------DGiiL~~  192 (737)
T KOG1524|consen  152 -------------------------RWAPNSNSIV-FCQGGHISIKPLAANS--KIIRW--RAH---------DGLVLSL  192 (737)
T ss_pred             -------------------------EECCCCCceE-EecCCeEEEeeccccc--ceeEE--ecc---------CcEEEEe
Confidence                                     2222221111 1111121111111000  00000  111         1247799


Q ss_pred             EEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEEEccc
Q psy11885        242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTD  321 (327)
Q Consensus       242 ~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (327)
                      .|+|....+++|++|-..+|||.. |+.+.....|+-+|++++|+|| +.+|.++..-+.+++|    -.+-||..+-.+
T Consensus       193 ~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p----~~GSifnlsWS~  266 (737)
T KOG1524|consen  193 SWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSP----RVGSIFNLSWSA  266 (737)
T ss_pred             ecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeeeeeeecCC----CccceEEEEEcC
Confidence            999999999999999999999965 6777777788899999999999 8888898888888887    456677777666


Q ss_pred             ccc
Q psy11885        322 QET  324 (327)
Q Consensus       322 ~~~  324 (327)
                      +|+
T Consensus       267 DGT  269 (737)
T KOG1524|consen  267 DGT  269 (737)
T ss_pred             CCc
Confidence            665

>KOG0303|consensus

Probab=99.64  E-value=1.6e-14  Score=121.94  Aligned_cols=226  Identities=14%  Similarity=0.206  Sum_probs=145.1

Q ss_pred             EecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCCCc--------eeeeecCCccEEEEEEeCC-CCEEEEEECCCeE
Q psy11885         53 KYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQT--------ETVIGTHDQPIRAVEYSDE-VNCILTGSWDTSV  121 (327)
Q Consensus        53 ~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~--------~~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i  121 (327)
                      ..+|+.+|+.+.|.  +...++|||.|.+|.+|++..+.        ...+.+|...|.-++|+|. .+.|+|++.|++|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            34799999999993  77889999999999999987542        2357789999999999985 4778999999999


Q ss_pred             EEEeCCCCceeeeeeCCCcEEEEec--CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe
Q psy11885        122 KMWDPRSSRCVGNYTQPDKVFTMSL--CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS  199 (327)
Q Consensus       122 ~lwdl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (327)
                      .+||+.+++.+-++.+++.++++++  +|..+++.+.|+.|||||.|++..+.....+.- .-...+.|..++..+.++-
T Consensus       157 ~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG-~k~~Raifl~~g~i~tTGf  235 (472)
T KOG0303|consen  157 SIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG-AKPARAIFLASGKIFTTGF  235 (472)
T ss_pred             EEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC-CCcceeEEeccCceeeecc
Confidence            9999999998888888888876655  588999999999999999998875533211111 1111222333433222222


Q ss_pred             ec-CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE-EecCCCeEEEEeCCCcee-eeecCcC
Q psy11885        200 IE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSDGYVNIWDGFNKKR-LCQFHRY  276 (327)
Q Consensus       200 ~~-~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la-sgs~dg~i~iWd~~~~~~-~~~~~~~  276 (327)
                      .. ....+.+|+.........  +  +.+-. +.    .|----|.||.+.+. .|-.|+.||.|.+.+-.+ +..+..+
T Consensus       236 sr~seRq~aLwdp~nl~eP~~--~--~elDt-Sn----Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f  306 (472)
T KOG0303|consen  236 SRMSERQIALWDPNNLEEPIA--L--QELDT-SN----GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF  306 (472)
T ss_pred             ccccccceeccCcccccCcce--e--EEecc-CC----ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc
Confidence            11 112233354332111111  0  11100 01    122234567888775 555689999998766432 2222211


Q ss_pred             --CcceEEEEECCC
Q psy11885        277 --DTGITSLCFSYD  288 (327)
Q Consensus       277 --~~~v~~l~fspd  288 (327)
                        ..+-..++|-|.
T Consensus       307 ~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  307 SSKEPQRGMGFMPK  320 (472)
T ss_pred             ccCCcccccccccc
Confidence              224466778775

>KOG1310|consensus

Probab=99.64  E-value=4.4e-15  Score=130.07  Aligned_cols=231  Identities=16%  Similarity=0.241  Sum_probs=153.6

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE--ecCCCceeeEEE-e--CCceEEEEecCCcEEEEEcC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK--YAHSDPVLDCCF-Q--DAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~h~~~v~~~~~-~--~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      ..|++.|+|+.|+.+ +.+|++||.|-.+.|||....++...  .+|...|.++.| +  ....++||+.|..|+++|++
T Consensus        47 ~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~  125 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD  125 (758)
T ss_pred             ccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence            458899999999995 68999999999999999987775443  369999999999 3  56788899999999999998


Q ss_pred             CCce-----------eeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCC-ceeeee------e----C--CCcE
Q psy11885         87 TQTE-----------TVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSS-RCVGNY------T----Q--PDKV  141 (327)
Q Consensus        87 ~~~~-----------~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~-~~~~~~------~----~--~~~~  141 (327)
                      ..+.           .....|...|..|+..|++ +.+.+++.||+||-+|++.. .|-...      .    +  .-..
T Consensus       126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~  205 (758)
T KOG1310|consen  126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKC  205 (758)
T ss_pred             cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeee
Confidence            5211           1235688899999999987 88999999999999999863 121111      1    1  1123


Q ss_pred             EEEecC-CCeEEEEeCCCeEEEEECCCCccceee-ecccc--eeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccc
Q psy11885        142 FTMSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQR-RESSL--KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK  217 (327)
Q Consensus       142 ~~~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  217 (327)
                      ..+++. +..|++|+.|--.++||.|........ .....  +...+|+..+..+..   ....+.             .
T Consensus       206 ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---kn~~gn-------------~  269 (758)
T KOG1310|consen  206 LTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---KNSQGN-------------L  269 (758)
T ss_pred             eeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---cCcccc-------------c
Confidence            344444 567999999999999997643211000 00000  001122222211110   000000             0


Q ss_pred             ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885        218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~  273 (327)
                      ..    .          .-.++-++|+|+|.-|.+.=..-.|+++|+..++.+..+
T Consensus       270 ~~----~----------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  270 DR----Y----------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             cc----c----------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            00    0          012567899999988877655668999999887766543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=3.2e-14  Score=129.75  Aligned_cols=232  Identities=9%  Similarity=0.056  Sum_probs=147.7

Q ss_pred             CCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC---CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEE
Q psy11885         37 DCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD---CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCI  112 (327)
Q Consensus        37 d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D---g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l  112 (327)
                      +..|.+||...........|...+.+.+|+ ++.+++.++.+   ..|.+||+.++....+....+....++|+|||+.|
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L  262 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL  262 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence            468999999776655555677788999995 78888877654   36999999887654443333334568999999988


Q ss_pred             EEEE-CCCeEEEE--eCCCCceeeeeeCC--CcEEEEecCCCeEEEEe-CCCeEEEEECCCCccceeeecccceeeeEEe
Q psy11885        113 LTGS-WDTSVKMW--DPRSSRCVGNYTQP--DKVFTMSLCGEKFVVGT-AGRKVCIWDLRNMGYIMQRRESSLKFQTRCI  186 (327)
Q Consensus       113 ~sgs-~d~~i~lw--dl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~  186 (327)
                      +.++ .++.+.+|  |+.+++........  .....++++|..++..+ .++..+||++............. .   ...
T Consensus       263 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~---~~~  338 (429)
T PRK01742        263 AFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G---YSA  338 (429)
T ss_pred             EEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C---CCc
Confidence            8764 67876655  66665543222222  23456788888777655 56788888775322111111111 0   234


Q ss_pred             EEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeC--
Q psy11885        187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG--  264 (327)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~--  264 (327)
                      .++|+++.+++.+.+ ...+  ++........   +... .         ...+++|+|||+.|+.++.++.+++|.+  
T Consensus       339 ~~SpDG~~ia~~~~~-~i~~--~Dl~~g~~~~---lt~~-~---------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~  402 (429)
T PRK01742        339 QISADGKTLVMINGD-NVVK--QDLTSGSTEV---LSST-F---------LDESPSISPNGIMIIYSSTQGLGKVLQLVS  402 (429)
T ss_pred             cCCCCCCEEEEEcCC-CEEE--EECCCCCeEE---ecCC-C---------CCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            567787776666543 2333  3432211100   0000 0         1235789999999999999998888875  


Q ss_pred             CCceeeeecCcCCcceEEEEECCC
Q psy11885        265 FNKKRLCQFHRYDTGITSLCFSYD  288 (327)
Q Consensus       265 ~~~~~~~~~~~~~~~v~~l~fspd  288 (327)
                      .+++.+..+..++..+...+|||-
T Consensus       403 ~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        403 ADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCceEEccCCCCCCCCcccCCC
Confidence            357777778777777889999984

>KOG2111|consensus

Probab=99.64  E-value=3.1e-13  Score=111.30  Aligned_cols=237  Identities=18%  Similarity=0.269  Sum_probs=140.9

Q ss_pred             eeeEEEeCCceEEEEecCCcEEEEEcCCCceee-eecCCccEEEEEEeCCCCEE-EEEECC------CeEEEEeCCCCce
Q psy11885         60 VLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETV-IGTHDQPIRAVEYSDEVNCI-LTGSWD------TSVKMWDPRSSRC  131 (327)
Q Consensus        60 v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~-~~~h~~~V~~l~~~~~~~~l-~sgs~d------~~i~lwdl~~~~~  131 (327)
                      ..+++|....-.++.+.|.-.|+|+.+.-++.. ...+...+.-+..---.+++ +.|+..      ++|-+||-...++
T Consensus         8 ~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~   87 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERC   87 (346)
T ss_pred             eeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcE
Confidence            445778666667777778889999987532211 11111111111111111233 344433      6899999767778


Q ss_pred             eeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECC-CCccceeeecccceeeeEEeEEeeCCCceEEEe-e--cCeEEEE
Q psy11885        132 VGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLR-NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS-I--EGRAAVE  207 (327)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~  207 (327)
                      +.++.-...+.++...++++++.- .+.|.||... +.+.+.......-+- ..| +..|.....+++. .  .|.+.| 
T Consensus        88 i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPk-GlC-~~~~~~~k~~LafPg~k~GqvQi-  163 (346)
T KOG2111|consen   88 IIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK-GLC-SLCPTSNKSLLAFPGFKTGQVQI-  163 (346)
T ss_pred             EEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCC-ceE-eecCCCCceEEEcCCCccceEEE-
Confidence            888887777888888888887764 5789999876 333221111100000 011 1112222222221 1  133333 


Q ss_pred             EccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCe-EEEEeCCCceeeeecCcCC--cceEEEE
Q psy11885        208 YLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY-VNIWDGFNKKRLCQFHRYD--TGITSLC  284 (327)
Q Consensus       208 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~-i~iWd~~~~~~~~~~~~~~--~~v~~l~  284 (327)
                       .+...........+..         |.+.|.|++.+-+|..+||+|..|| |||||..+|+.++.+++..  ..|.+++
T Consensus       164 -~dL~~~~~~~p~~I~A---------H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia  233 (346)
T KOG2111|consen  164 -VDLASTKPNAPSIINA---------HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA  233 (346)
T ss_pred             -EEhhhcCcCCceEEEc---------ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence             3222111100112222         3457999999999999999999998 7999999999999886543  3599999


Q ss_pred             ECCCCCEEEEEEccccccCCCCCCCCCCcEEEEEccccc
Q psy11885        285 FSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTDQE  323 (327)
Q Consensus       285 fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (327)
                      ||||+++||+++             -+.-+|||.+.+..
T Consensus       234 FSp~~s~LavsS-------------dKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  234 FSPNSSWLAVSS-------------DKGTLHIFSLRDTE  259 (346)
T ss_pred             eCCCccEEEEEc-------------CCCeEEEEEeecCC
Confidence            999999999997             44556777766644

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.63  E-value=1.6e-12  Score=116.95  Aligned_cols=263  Identities=24%  Similarity=0.412  Sum_probs=171.6

Q ss_pred             CCeeEEEE-ecCCCcEEEEEE-CCCcEEEEECCC-Ce-EEEEecCCCceeeEEEe-CCceEEEEec-CCcEEEEEcCCCc
Q psy11885         16 DGITAVKF-APNSNQFLLASS-WDCNVSLYDITN-NN-LRLKYAHSDPVLDCCFQ-DAVHSFSGGL-DCTLKMFDFNTQT   89 (327)
Q Consensus        16 ~~I~~i~f-s~~~~~~l~s~~-~d~~i~iwd~~~-~~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~-Dg~i~vwd~~~~~   89 (327)
                      ..+..+.+ +++...+++..+ .|+.+++||... .. ......|...|..+.|+ ++..+++++. |+.+++|++....
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (466)
T COG2319         110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK  189 (466)
T ss_pred             CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc
Confidence            36777777 775443455544 499999999987 44 55666799999999995 5557777775 9999999998744


Q ss_pred             e-eeeecCCccEEEEEEeCCCC-EEEEEECCCeEEEEeCCCCceee-eeeCCCc--EEEEecCCCeEEEEeCCCeEEEEE
Q psy11885         90 E-TVIGTHDQPIRAVEYSDEVN-CILTGSWDTSVKMWDPRSSRCVG-NYTQPDK--VFTMSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        90 ~-~~~~~h~~~V~~l~~~~~~~-~l~sgs~d~~i~lwdl~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      . ..+..|...|.+++|+|++. .+++++.|+.|++||.+.++... .+..+..  +..+.+.+..+++++.|+.+++||
T Consensus       190 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  269 (466)
T COG2319         190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWD  269 (466)
T ss_pred             eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEee
Confidence            3 45566999999999999987 55666999999999988777766 3443322  225677777888899999999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      ++......... ........++.+.|....+++++.++...+  |+..............|         ...+..+.|.
T Consensus       270 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  337 (466)
T COG2319         270 LRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRL--WDLETGKLLSSLTLKGH---------EGPVSSLSFS  337 (466)
T ss_pred             ecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEE--EEcCCCceEEEeeeccc---------CCceEEEEEC
Confidence            98765311111 111233455667775666666555544344  44332111110000111         1146777883


Q ss_pred             cCCCeEEEe-cCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEE
Q psy11885        245 QEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVL  292 (327)
Q Consensus       245 pd~~~lasg-s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~l  292 (327)
                      +++..++.+ ..|+.+++|+............. ..+..+.|++ ...+
T Consensus       338 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~  384 (466)
T COG2319         338 PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRV  384 (466)
T ss_pred             CCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCE
Confidence            343456555 68899999998877622222222 2278999999 6333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.61  E-value=3.6e-12  Score=112.54  Aligned_cols=239  Identities=8%  Similarity=0.104  Sum_probs=143.6

Q ss_pred             CCeeEEEEecCCCcEEEEEE-CCCcEEEEECC-CCeEEEE--ecCCCceeeEEEe-CCceEEEEec-CCcEEEEEcCCCc
Q psy11885         16 DGITAVKFAPNSNQFLLASS-WDCNVSLYDIT-NNNLRLK--YAHSDPVLDCCFQ-DAVHSFSGGL-DCTLKMFDFNTQT   89 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~--~~h~~~v~~~~~~-~~~~~~sgs~-Dg~i~vwd~~~~~   89 (327)
                      +....++|+|++ ++|++++ .++.|.+|++. ++++...  ....+....++++ ++..+++++. ++.|.+|+++...
T Consensus        35 ~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         35 GQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            567889999964 6665554 57899999996 3443222  2233345677784 7777876654 8899999997432


Q ss_pred             -e-eee--ecCCccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCCCceeee-----ee---C-CCcEEEEecCCCeEEEEe
Q psy11885         90 -E-TVI--GTHDQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRSSRCVGN-----YT---Q-PDKVFTMSLCGEKFVVGT  155 (327)
Q Consensus        90 -~-~~~--~~h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~~~~~~~-----~~---~-~~~~~~~~~~~~~~~~~~  155 (327)
                       . ...  ..+......++++|++++++++. .++.|.+||+++...+..     ..   . ......++++++.++++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~  193 (330)
T PRK11028        114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN  193 (330)
T ss_pred             CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEe
Confidence             1 111  12223457788999999886554 569999999976332211     11   1 112456778888888876


Q ss_pred             C-CCeEEEEECCCC--cc--ceeeec--ccc--eeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeee
Q psy11885        156 A-GRKVCIWDLRNM--GY--IMQRRE--SSL--KFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCH  225 (327)
Q Consensus       156 ~-d~~v~iwD~~~~--~~--~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h  225 (327)
                      . +++|.+||++..  ..  +.....  ...  ......+.++|+++.+.++.. ++.+.++.++.....  .  .+..+
T Consensus       194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~--~--~~~~~  269 (330)
T PRK11028        194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV--L--SFEGH  269 (330)
T ss_pred             cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe--E--EEeEE
Confidence            6 899999999732  21  111000  000  001124667788776666543 345555444332211  1  11111


Q ss_pred             eeccCCeeeEEEeeEEEEecCCCeEEEecC-CCeEEEEeCC
Q psy11885        226 RIKEDGIEKIYPVNAISFHQEYNTFATGGS-DGYVNIWDGF  265 (327)
Q Consensus       226 ~~~~~~~~~~~~v~~v~~spd~~~lasgs~-dg~i~iWd~~  265 (327)
                      ....      .....++++|||++|+++.. +++|.+|++.
T Consensus       270 ~~~~------~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        270 QPTE------TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             Eecc------ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            1100      12457899999999987765 8999999764

>KOG1188|consensus

Probab=99.60  E-value=6e-14  Score=116.43  Aligned_cols=245  Identities=17%  Similarity=0.274  Sum_probs=148.0

Q ss_pred             CCCCCCeeEEEEecC-CCcEEEEEECCCcEEEEECCCCeE--EEEe-cCC-CceeeEEEe-CCceEEEE----ecCCcEE
Q psy11885         12 SPPEDGITAVKFAPN-SNQFLLASSWDCNVSLYDITNNNL--RLKY-AHS-DPVLDCCFQ-DAVHSFSG----GLDCTLK   81 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~-~~~~l~s~~~d~~i~iwd~~~~~~--~~~~-~h~-~~v~~~~~~-~~~~~~sg----s~Dg~i~   81 (327)
                      +.+...++.++|... +...+.+++.||+|++||+.....  +..+ .++ .+..+++.. +...+++|    ..|-.|.
T Consensus        67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~  146 (376)
T KOG1188|consen   67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVV  146 (376)
T ss_pred             cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEE
Confidence            344456777888764 557899999999999999987542  2333 344 344555553 45555554    2366799


Q ss_pred             EEEcCCCce---eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCc----eeeeeeCCCcEEEEecCC---Ce
Q psy11885         82 MFDFNTQTE---TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSR----CVGNYTQPDKVFTMSLCG---EK  150 (327)
Q Consensus        82 vwd~~~~~~---~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~----~~~~~~~~~~~~~~~~~~---~~  150 (327)
                      +||++..+.   .....|.+.|++|+|+| +.+.|+|||.||-|.+||++...    ++..+.....+-.+.+.+   ++
T Consensus       147 lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykr  226 (376)
T KOG1188|consen  147 LWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKR  226 (376)
T ss_pred             EEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcce
Confidence            999987665   23568999999999998 56899999999999999997542    222333333333333332   36


Q ss_pred             EEEEeCCCeEEEEECCCCccceeeeccccee-----ee---EEeEEe-e-CCCceEEEee-cCeEEEEEcc-CCccc-cc
Q psy11885        151 FVVGTAGRKVCIWDLRNMGYIMQRRESSLKF-----QT---RCIKCF-P-NKQGYVLSSI-EGRAAVEYLD-TGPEM-QK  217 (327)
Q Consensus       151 ~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~-----~~---~~~~~~-~-~~~~~~~~~~-~~~~~i~~~~-~~~~~-~~  217 (327)
                      +.+.+...+..+|+++.+.............     ..   .-+..+ | +...++++.. .+...+..+. ..+.. ..
T Consensus       227 I~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~  306 (376)
T KOG1188|consen  227 IMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLT  306 (376)
T ss_pred             EEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccC
Confidence            8888999999999998765322211111100     00   011112 2 2233344333 4444443322 11110 00


Q ss_pred             ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeC
Q psy11885        218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~  264 (327)
                      ....+.+        +|..-|.++.|...+..+.|||+||.+.+|..
T Consensus       307 ~~a~l~g--------~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  307 EPAILQG--------GHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             ccccccC--------CcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            0111111        12224677888888899999999999999975

>KOG1445|consensus

Probab=99.59  E-value=9.2e-15  Score=130.12  Aligned_cols=154  Identities=19%  Similarity=0.293  Sum_probs=122.2

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE--------EEEecCCCceeeEEEe--CCceEEEEecCCcEEEEEc
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--------RLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~   85 (327)
                      ..|+.+.|.|=+.+.||+++.||.|++|.+..+.+        ..+..|...|.+++|+  ....+++++.|-+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            46899999997678899999999999999875432        2344688999999996  5678889999999999999


Q ss_pred             CCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc-eeeeeeCC----CcEEEEecCCCeEEEEeCC--
Q psy11885         86 NTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR-CVGNYTQP----DKVFTMSLCGEKFVVGTAG--  157 (327)
Q Consensus        86 ~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~d--  157 (327)
                      ..... ..+.+|++.|..++|+|+|+.+++...||+||+|..++++ .+.+-..+    +.-+.+.++|..+++.+.|  
T Consensus       708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~  787 (1012)
T KOG1445|consen  708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS  787 (1012)
T ss_pred             hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence            98765 4688999999999999999999999999999999998875 33332222    2235567778877776655  


Q ss_pred             --CeEEEEECCCCc
Q psy11885        158 --RKVCIWDLRNMG  169 (327)
Q Consensus       158 --~~v~iwD~~~~~  169 (327)
                        +.|.+||..+..
T Consensus       788 SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  788 SERQVQMYDAQTLD  801 (1012)
T ss_pred             chhhhhhhhhhhcc
Confidence              468888876543

>KOG1240|consensus

Probab=99.59  E-value=5e-13  Score=127.10  Aligned_cols=253  Identities=12%  Similarity=0.176  Sum_probs=152.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC---C----eEEEEec-CCCceeeEEE-eCCceEEEEecCCcEEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN---N----NLRLKYA-HSDPVLDCCF-QDAVHSFSGGLDCTLKM   82 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~---~----~~~~~~~-h~~~v~~~~~-~~~~~~~sgs~Dg~i~v   82 (327)
                      +.|...|+.++-++....++++||.||+|++||...   +    +....+. -...+..+.+ ..+.+++.++.||.|++
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred             hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence            456678889999986668999999999999999753   1    1234444 4456777776 46778888899999999


Q ss_pred             EEcCCCc-ee------eee-cC-CccE-EEEEEeC-CCC-EEEEEECCCeEEEEeCCCCceeeeeeC---CC--cEEEEe
Q psy11885         83 FDFNTQT-ET------VIG-TH-DQPI-RAVEYSD-EVN-CILTGSWDTSVKMWDPRSSRCVGNYTQ---PD--KVFTMS  145 (327)
Q Consensus        83 wd~~~~~-~~------~~~-~h-~~~V-~~l~~~~-~~~-~l~sgs~d~~i~lwdl~~~~~~~~~~~---~~--~~~~~~  145 (327)
                      .+++... ..      .+. .+ .+.+ ...+|.. ++. .++.+..-+.|..||+++....+.++.   ++  ..++++
T Consensus      1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVID 1204 (1431)
T ss_pred             EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEec
Confidence            9987621 11      111 12 2333 3334432 333 677888889999999998776666543   23  345667


Q ss_pred             cCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCC--ceEE-EeecCeEEEEEccCCcccccceeee
Q psy11885        146 LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ--GYVL-SSIEGRAAVEYLDTGPEMQKMKYAF  222 (327)
Q Consensus       146 ~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~  222 (327)
                      ++++.++.|+..|.+-+||+|=...+. ........+.+.+.+++..+  ...+ ++..+...+..|+.....+......
T Consensus      1205 p~~~WlviGts~G~l~lWDLRF~~~i~-sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPIL-SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred             CCceEEEEecCCceEEEEEeecCceee-cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence            788899999999999999998332221 11122223345556666544  3333 3332444444454333222211110


Q ss_pred             eeeeeccCCeeeEE-----------EeeEEEEecCCCeEEEecCCCeEEEEeCCCce
Q psy11885        223 KCHRIKEDGIEKIY-----------PVNAISFHQEYNTFATGGSDGYVNIWDGFNKK  268 (327)
Q Consensus       223 ~~h~~~~~~~~~~~-----------~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~  268 (327)
                      .   ..+-.+++..           +....++.-.+..+.+|+.|..||.||....+
T Consensus      1284 s---~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1284 S---DGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             C---CCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            0   0000000000           12233444445678899999999999975543

>KOG1517|consensus

Probab=99.59  E-value=1.5e-13  Score=128.80  Aligned_cols=253  Identities=16%  Similarity=0.186  Sum_probs=154.3

Q ss_pred             eecCCCCCCCeeEEEEecC-CCcEEEEEECCCcEEEEECCC-----CeEEEEe----cCC---Cce-eeEEE-eCCceEE
Q psy11885          8 YSLNSPPEDGITAVKFAPN-SNQFLLASSWDCNVSLYDITN-----NNLRLKY----AHS---DPV-LDCCF-QDAVHSF   72 (327)
Q Consensus         8 ~~~~~~~~~~I~~i~fs~~-~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~----~h~---~~v-~~~~~-~~~~~~~   72 (327)
                      |.........|+.+.+-.+ +..++++++.||.||||+-..     .++...+    ++.   ... .-+.| ....+++
T Consensus      1102 F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll 1181 (1387)
T KOG1517|consen 1102 FDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL 1181 (1387)
T ss_pred             ccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEE
Confidence            3334455678999988864 346899999999999998532     2233222    111   011 12235 3455666


Q ss_pred             EEecCCcEEEEEcCCCceee--eecCCccEEEEEEe-CCCCEEEEEECCCeEEEEeCCCCce---eeeeeC---CCcEEE
Q psy11885         73 SGGLDCTLKMFDFNTQTETV--IGTHDQPIRAVEYS-DEVNCILTGSWDTSVKMWDPRSSRC---VGNYTQ---PDKVFT  143 (327)
Q Consensus        73 sgs~Dg~i~vwd~~~~~~~~--~~~h~~~V~~l~~~-~~~~~l~sgs~d~~i~lwdl~~~~~---~~~~~~---~~~~~~  143 (327)
                      ++|.-..||+||........  ..+-+..|+++.-+ +.|+.++.|-.||.||+||.|....   +..+..   ...+..
T Consensus      1182 ~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1182 VTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred             ecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence            66668899999998765432  22345567777543 4579999999999999999987543   233322   222443


Q ss_pred             Ee--cCCC-eEEEEeCCCeEEEEECCCC-cc-ceee-ecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccc
Q psy11885        144 MS--LCGE-KFVVGTAGRKVCIWDLRNM-GY-IMQR-RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK  217 (327)
Q Consensus       144 ~~--~~~~-~~~~~~~d~~v~iwD~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  217 (327)
                      ++  ..|. .+++|+.+|.|++||+|.. +. .... ...+......++..+...+.+++|+. +.+.|+..... ....
T Consensus      1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~ 1339 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNI 1339 (1387)
T ss_pred             EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcc
Confidence            33  3344 4999999999999999973 11 0000 00000112355666666666666665 66666443321 1111


Q ss_pred             ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCce
Q psy11885        218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK  268 (327)
Q Consensus       218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~  268 (327)
                      .+    .+..  ........+.|++|||-.-.||+|+.|.+|.||...+++
T Consensus      1340 ~k----~n~~--F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1340 IK----YNPG--FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cc----cCcc--cccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            11    1110  011223457899999999999999999999999876654

>KOG1587|consensus

Probab=99.59  E-value=4.9e-13  Score=122.40  Aligned_cols=237  Identities=16%  Similarity=0.211  Sum_probs=150.2

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE--E-----EEecCCCceeeEEEe---CCceEEEEecCCcEEEEEc
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--R-----LKYAHSDPVLDCCFQ---DAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~--~-----~~~~h~~~v~~~~~~---~~~~~~sgs~Dg~i~vwd~   85 (327)
                      ..|+|+.|+|....+|+.|..+|.|-+||+..+..  .     ....|..+|..++|.   .+..++|+|.||.|+.|++
T Consensus       243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~  322 (555)
T KOG1587|consen  243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT  322 (555)
T ss_pred             CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence            58999999998878888899999999999987663  1     122488899999983   2356899999999999987


Q ss_pred             CCCce----eee--ecC-------CccEEEEEEeC-CCCEEEEEECCCeEEE---EeCCCCc-----eeee-eeCCCcEE
Q psy11885         86 NTQTE----TVI--GTH-------DQPIRAVEYSD-EVNCILTGSWDTSVKM---WDPRSSR-----CVGN-YTQPDKVF  142 (327)
Q Consensus        86 ~~~~~----~~~--~~h-------~~~V~~l~~~~-~~~~l~sgs~d~~i~l---wdl~~~~-----~~~~-~~~~~~~~  142 (327)
                      +.-..    ..+  ..|       ...+++++|.+ +.+.++.|+.+|.|..   ++.+...     .+.. ..+.+.+.
T Consensus       323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~  402 (555)
T KOG1587|consen  323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVY  402 (555)
T ss_pred             cccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceE
Confidence            64221    011  111       23578899976 5678999999999865   3333222     1111 12334455


Q ss_pred             EEecC--C-CeEEEEeCCCeEEEEECC-CCccceeeecccceeeeEEeEEeeCCCce-EEEeecCeEEEEEccCCccccc
Q psy11885        143 TMSLC--G-EKFVVGTAGRKVCIWDLR-NMGYIMQRRESSLKFQTRCIKCFPNKQGY-VLSSIEGRAAVEYLDTGPEMQK  217 (327)
Q Consensus       143 ~~~~~--~-~~~~~~~~d~~v~iwD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~  217 (327)
                      ++..+  . ..|++++ |.+|+||... ....... .... ......++++|....+ ++...+|.+.+  ||.......
T Consensus       403 ~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~-~~~~-~~~v~~vaWSptrpavF~~~d~~G~l~i--WDLl~~~~~  477 (555)
T KOG1587|consen  403 AVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLS-LDSS-PDYVTDVAWSPTRPAVFATVDGDGNLDI--WDLLQDDEE  477 (555)
T ss_pred             eeecCCCccceeeeec-cceeEeccccCCCCcchh-hhhc-cceeeeeEEcCcCceEEEEEcCCCceeh--hhhhccccC
Confidence            55544  3 3455555 9999999876 3222211 1111 1124567888876543 33344555444  664332211


Q ss_pred             ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885        218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~  266 (327)
                      .....+.+         ....+.+.|++.|+.|+.|+..|++.+|++..
T Consensus       478 Pv~s~~~~---------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  478 PVLSQKVC---------SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             Cccccccc---------ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            11111100         12457788999999999999999999999864

>KOG0650|consensus

Probab=99.57  E-value=6.3e-13  Score=117.81  Aligned_cols=241  Identities=12%  Similarity=0.176  Sum_probs=162.0

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEEC---------------------------------CC---Ce--EEEEecC
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDI---------------------------------TN---NN--LRLKYAH   56 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~---------------------------------~~---~~--~~~~~~h   56 (327)
                      .+.|+||+|+|.+..-+++++.+..+.|-|-                                 ..   .+  +.....|
T Consensus       441 d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~  520 (733)
T KOG0650|consen  441 DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH  520 (733)
T ss_pred             cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec
Confidence            4589999999976554444444444444432                                 10   11  1234468


Q ss_pred             CCceeeEEEe-CCceEEEEecC---CcEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce
Q psy11885         57 SDPVLDCCFQ-DAVHSFSGGLD---CTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC  131 (327)
Q Consensus        57 ~~~v~~~~~~-~~~~~~sgs~D---g~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~  131 (327)
                      .++|..+.|+ .|.++++...+   ..|.+.++.....+ .+..-.+.|.++.|+|...+++.++. ..||+||+...+.
T Consensus       521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel  599 (733)
T KOG0650|consen  521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL  599 (733)
T ss_pred             CCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH
Confidence            8889999996 88898876544   56888888766543 23344567899999999989998886 6799999988776


Q ss_pred             eeeeeCCC---cEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEE
Q psy11885        132 VGNYTQPD---KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEY  208 (327)
Q Consensus       132 ~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  208 (327)
                      ++.+....   ..+++++.|+.++.++.|+.+..+|+.-.....+.. ..+.-..+.+++++..+.+++++.++.+.|+.
T Consensus       600 vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l-r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  600 VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL-RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh-hhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            66554322   346677889999999999999999997432221110 11112346778888888999999989888765


Q ss_pred             ccCCccc--cccee---eeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEE
Q psy11885        209 LDTGPEM--QKMKY---AFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW  262 (327)
Q Consensus       209 ~~~~~~~--~~~~~---~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iW  262 (327)
                      --.-...  +.+..   .+.+|....     ...|-.+.|||....|++++.||+|++|
T Consensus       679 g~VY~Dl~qnpliVPlK~L~gH~~~~-----~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  679 GMVYNDLLQNPLIVPLKRLRGHEKTN-----DLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeehhhhcCCceEeeeeccCceeec-----ccceEeecccCCCceEEecCCCceEEee
Confidence            2211111  11111   223443321     1236778999999999999999999998

>KOG0649|consensus

Probab=99.56  E-value=3.3e-13  Score=107.30  Aligned_cols=148  Identities=22%  Similarity=0.342  Sum_probs=118.6

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE-ecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCcee-
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK-YAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTET-   91 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~-   91 (327)
                      --+|+++...|..+.++.+| -|+.++-||+++|++... .+|++-+.+++- ....+++||+.||++|+||..+.+.. 
T Consensus       114 vPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~  192 (325)
T KOG0649|consen  114 VPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS  192 (325)
T ss_pred             CCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE
Confidence            35799999999776666655 699999999999997554 479999999887 67789999999999999999887642 


Q ss_pred             ee---------ecCCc-cEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEE
Q psy11885         92 VI---------GTHDQ-PIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVC  161 (327)
Q Consensus        92 ~~---------~~h~~-~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  161 (327)
                      .+         ..|.+ -|.+++.+.  .+++.|+ ...+.+|.+++.++...+.-+..+-.+.+..+.+++++..+.|.
T Consensus       193 ~ie~yk~~~~lRp~~g~wigala~~e--dWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~  269 (325)
T KOG0649|consen  193 MIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQ  269 (325)
T ss_pred             EeccccChhhcCcccCceeEEEeccC--ceEEecC-CCceeEEeccCCCceEEEecccceeEeeeecceEEEecccccee
Confidence            22         22332 366666543  5776655 46799999999999999988888888888888999999999999


Q ss_pred             EEECC
Q psy11885        162 IWDLR  166 (327)
Q Consensus       162 iwD~~  166 (327)
                      -|.+.
T Consensus       270 ~~~l~  274 (325)
T KOG0649|consen  270 SYTLN  274 (325)
T ss_pred             eeeec
Confidence            99765

>KOG1538|consensus

Probab=99.56  E-value=1.8e-13  Score=122.62  Aligned_cols=233  Identities=15%  Similarity=0.256  Sum_probs=165.1

Q ss_pred             eecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcC
Q psy11885          8 YSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus         8 ~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      ++.-..|++.|.|++|+.+ ++.+|+|+.|..|.+|+-.-. -...+.|.+.|.|+.|. -..+++|++. ...-+|..+
T Consensus        46 lqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klE-G~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~  122 (1081)
T KOG1538|consen   46 LQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLE-GILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPE  122 (1081)
T ss_pred             ccccccccceEEEEEEccC-CceeccCCCceeEEEeccccc-ceeeeccCCeeeEeecCchHHHhhhcch-hhccccChh
Confidence            4445678899999999996 578999999999999976432 24568999999999995 4566777764 356678654


Q ss_pred             CCceeeeecC--CccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC----CcEEEEecC-------CCeEEE
Q psy11885         87 TQTETVIGTH--DQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP----DKVFTMSLC-------GEKFVV  153 (327)
Q Consensus        87 ~~~~~~~~~h--~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~----~~~~~~~~~-------~~~~~~  153 (327)
                      ...   ...|  ...+.+.+|..||++++-|-.+|+|.+-+- +++.-..++.|    ..+.++.++       .+.+++
T Consensus       123 qK~---V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV  198 (1081)
T KOG1538|consen  123 QKS---VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV  198 (1081)
T ss_pred             hhh---HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence            322   1222  345778899999999999999999988763 44443334332    235555444       245888


Q ss_pred             EeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCee
Q psy11885        154 GTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE  233 (327)
Q Consensus       154 ~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~  233 (327)
                      ..++.++.++.+.... +  .....+.+.+.|+..++++..+++|+.++...++--+   ....       -...    +
T Consensus       199 ~DW~qTLSFy~LsG~~-I--gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~---GvrL-------GTvg----~  261 (1081)
T KOG1538|consen  199 ADWGQTLSFYQLSGKQ-I--GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD---GVRL-------GTVG----E  261 (1081)
T ss_pred             EeccceeEEEEeccee-e--cccccCCCCchhheeccCCcEEEEccCCCceEEEeec---CeEE-------eecc----c
Confidence            8999999999886432 1  1234566677899999999999999888776652211   1100       0000    1


Q ss_pred             eEEEeeEEEEecCCCeEEEecCCCeEEEEeC
Q psy11885        234 KIYPVNAISFHQEYNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       234 ~~~~v~~v~~spd~~~lasgs~dg~i~iWd~  264 (327)
                      ...+|++++.+|++++.+.|..||+|--|++
T Consensus       262 ~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  262 QDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             cceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            1247999999999999999999999999975

>KOG1963|consensus

Probab=99.55  E-value=5e-12  Score=116.72  Aligned_cols=266  Identities=17%  Similarity=0.183  Sum_probs=161.3

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe--C--CceEEEEecCCcEEEEEcCCCceeee
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ--D--AVHSFSGGLDCTLKMFDFNTQTETVI   93 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~--~--~~~~~sgs~Dg~i~vwd~~~~~~~~~   93 (327)
                      ..-.|++| +++|+.. .+..|.||...++++. .+..|..++..+.+.  .  ..++++++.||.|++||...+.....
T Consensus        20 ~~avfSnD-~k~l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt   97 (792)
T KOG1963|consen   20 SPAVFSND-AKFLFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT   97 (792)
T ss_pred             cccccccC-CcEEEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence            45678985 4666644 4789999999999854 445688889888772  2  25677999999999999876654333


Q ss_pred             ecCCccEEEEEEeC----CCCEEEEEECCCe------------EEEEeCCCCce--eeeeeC--CCcEEEEecCCCeEEE
Q psy11885         94 GTHDQPIRAVEYSD----EVNCILTGSWDTS------------VKMWDPRSSRC--VGNYTQ--PDKVFTMSLCGEKFVV  153 (327)
Q Consensus        94 ~~h~~~V~~l~~~~----~~~~l~sgs~d~~------------i~lwdl~~~~~--~~~~~~--~~~~~~~~~~~~~~~~  153 (327)
                      ..-+.++.++.+.+    ....+..+..|..            ++-+.+.+-..  ...+..  ...++.....++..+ 
T Consensus        98 ~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~-  176 (792)
T KOG1963|consen   98 FDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG-  176 (792)
T ss_pred             EecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE-
Confidence            22233444443321    1111112222221            11122211000  000000  122333344444333 


Q ss_pred             EeCCCeEEEEECCCCcc--ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCC-cccccceeeeeeeeeccC
Q psy11885        154 GTAGRKVCIWDLRNMGY--IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG-PEMQKMKYAFKCHRIKED  230 (327)
Q Consensus       154 ~~~d~~v~iwD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~h~~~~~  230 (327)
                      ...+..+.+|+......  ........+.+...|.+++|++..++++..+|.+.+|. +.+ .........++.|.    
T Consensus       177 i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~-d~~~~~~~~t~t~lHWH~----  251 (792)
T KOG1963|consen  177 IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWR-DFGSSDDSETCTLLHWHH----  251 (792)
T ss_pred             EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEe-ccccccccccceEEEecc----
Confidence            33456678888765221  11111112223357889999999999999999877644 222 11111111223332    


Q ss_pred             CeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        231 GIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       231 ~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                           ..|++++|+++|.+|.|||..|..-+|.+.+++ .+-+.+..++|..+.+|||+.+.+.-+.|
T Consensus       252 -----~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~D  313 (792)
T KOG1963|consen  252 -----DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLED  313 (792)
T ss_pred             -----cccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecC
Confidence                 269999999999999999999999999999987 44556777899999999999999988853

>KOG1272|consensus

Probab=99.55  E-value=2.2e-14  Score=123.36  Aligned_cols=244  Identities=19%  Similarity=0.261  Sum_probs=175.1

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeee
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIG   94 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~   94 (327)
                      +-+-..+.|+.+ +..|+.||.-|.+..+|+.++++..-..-...|..+.|-...++++.....-+.+||-..-...++.
T Consensus       129 eFGPY~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk  207 (545)
T KOG1272|consen  129 EFGPYHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK  207 (545)
T ss_pred             ccCCeeeeecCC-ccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehh
Confidence            445677899985 5788999999999999999999876665556788888855555555556788999997665566666


Q ss_pred             cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-CC--cEEEEecCCCeEEEEeCCCeEEEEECCCCccc
Q psy11885         95 THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PD--KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus        95 ~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      .|. .|..+.|-|-.-+|++++..|-++--|+.+|+.+..+.. .+  .++...|-+..+-+|...|+|.+|.-...+..
T Consensus       208 ~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL  286 (545)
T KOG1272|consen  208 RHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL  286 (545)
T ss_pred             hcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence            664 588999999888899999999999999999998877643 22  23334444555667788888888865432211


Q ss_pred             eeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE
Q psy11885        172 MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA  251 (327)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la  251 (327)
                                                                  -+    +-||.         .+|.+|++.++|+++|
T Consensus       287 --------------------------------------------vK----iLcH~---------g~V~siAv~~~G~YMa  309 (545)
T KOG1272|consen  287 --------------------------------------------VK----ILCHR---------GPVSSIAVDRGGRYMA  309 (545)
T ss_pred             --------------------------------------------HH----HHhcC---------CCcceEEECCCCcEEe
Confidence                                                        00    01232         3789999999999999


Q ss_pred             EecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCCCC----CCCCcEEEEEccc
Q psy11885        252 TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDP----IPPNNIFIRHVTD  321 (327)
Q Consensus       252 sgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  321 (327)
                      |.|.|+.++|||+++...+.++.. .-+...++||..| +||.+-++..  ..|.|.    .+.+--|+.|.++
T Consensus       310 TtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v--~iw~d~~~~s~~~~~pYm~H~~~  379 (545)
T KOG1272|consen  310 TTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALSYGDHV--QIWKDALKGSGHGETPYMNHRCG  379 (545)
T ss_pred             ecccccceeEeeeccccccceeec-CCCcccccccccc-ceeeecCCee--eeehhhhcCCCCCCcchhhhccC
Confidence            999999999999998887766654 2356789999865 6665544443  334333    2445556555443

>KOG2919|consensus

Probab=99.55  E-value=1.6e-13  Score=113.29  Aligned_cols=149  Identities=17%  Similarity=0.407  Sum_probs=110.5

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEEC-CCCe-EE--EEecC-----CCceeeEEEe--CCceEEEEecCCcEEEEEcCC
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDI-TNNN-LR--LKYAH-----SDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~-~~~~-~~--~~~~h-----~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      .+++|+|++ ..|+ +|....|+++|. ..|+ ..  ....|     .+.+.+.+|+  +...++.|+.-.++-++.-..
T Consensus       162 hsL~Fs~DG-eqlf-aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~  239 (406)
T KOG2919|consen  162 HSLQFSPDG-EQLF-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG  239 (406)
T ss_pred             eeEEecCCC-CeEe-ecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence            589999975 5555 467899999998 4554 21  12222     3445667785  455778888888888887665


Q ss_pred             Cce-eeeecCCccEEEEEEeCCCCEEEEEEC-CCeEEEEeCCCC-ceeeeeeCC----Cc--EEEEecCCCeEEEEeCCC
Q psy11885         88 QTE-TVIGTHDQPIRAVEYSDEVNCILTGSW-DTSVKMWDPRSS-RCVGNYTQP----DK--VFTMSLCGEKFVVGTAGR  158 (327)
Q Consensus        88 ~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~-d~~i~lwdl~~~-~~~~~~~~~----~~--~~~~~~~~~~~~~~~~d~  158 (327)
                      +.+ .++.+|.+.|+.|+|.++|+.|++|.. |.+|..||+|.. ..+..+..+    +.  .+.+.++++.|++|+.||
T Consensus       240 ~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG  319 (406)
T KOG2919|consen  240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG  319 (406)
T ss_pred             CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence            554 467899999999999999999999976 789999999863 344444322    22  356778899999999999


Q ss_pred             eEEEEECCCCc
Q psy11885        159 KVCIWDLRNMG  169 (327)
Q Consensus       159 ~v~iwD~~~~~  169 (327)
                      .|++||++...
T Consensus       320 ~V~vwdlk~~g  330 (406)
T KOG2919|consen  320 SVRVWDLKDLG  330 (406)
T ss_pred             cEEEEecCCCC
Confidence            99999998743

>KOG1524|consensus

Probab=99.55  E-value=1.9e-13  Score=119.62  Aligned_cols=199  Identities=16%  Similarity=0.231  Sum_probs=131.5

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeC
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSD  107 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~  107 (327)
                      ..++.++.||.+.|-+-...-.....+|.+++.+.+| ++|.-++|+|.||.|++|.-.......+.....+|.|++|.|
T Consensus        76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p  155 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP  155 (737)
T ss_pred             ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence            4677888999999987655445566789999999999 589999999999999999855433333444567899999999


Q ss_pred             CCCEEEEE-ECCCeEEEEeCCCCceeeeeeCC-CcEEEEecC--CCeEEEEeCCCeEEEEECCCCccceeeecccceeee
Q psy11885        108 EVNCILTG-SWDTSVKMWDPRSSRCVGNYTQP-DKVFTMSLC--GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQT  183 (327)
Q Consensus       108 ~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~  183 (327)
                      +.+.++-+ +.--.|+-  +..+..+-.+..+ +.+.+++++  .+.+++|++|-..++||-.....             
T Consensus       156 ~S~~vl~c~g~h~~IKp--L~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L-------------  220 (737)
T KOG1524|consen  156 NSNSIVFCQGGHISIKP--LAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL-------------  220 (737)
T ss_pred             CCCceEEecCCeEEEee--cccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccc-------------
Confidence            87766554 33333333  3322222233333 445666665  56799999999999999642110             


Q ss_pred             EEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEe
Q psy11885        184 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd  263 (327)
                                               +.+.                    .|.+||++++|.|+ ..++.+|. ++.|   
T Consensus       221 -------------------------f~S~--------------------~~ey~ITSva~npd-~~~~v~S~-nt~R---  250 (737)
T KOG1524|consen  221 -------------------------FTSA--------------------AEEYAITSVAFNPE-KDYLLWSY-NTAR---  250 (737)
T ss_pred             -------------------------ccCC--------------------hhccceeeeeeccc-cceeeeee-eeee---
Confidence                                     0000                    11236788888888 66676654 2333   


Q ss_pred             CCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        264 GFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       264 ~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                            +.  +...+.|..++|||||..++.|++.++
T Consensus       251 ------~~--~p~~GSifnlsWS~DGTQ~a~gt~~G~  279 (737)
T KOG1524|consen  251 ------FS--SPRVGSIFNLSWSADGTQATCGTSTGQ  279 (737)
T ss_pred             ------ec--CCCccceEEEEEcCCCceeeccccCce
Confidence                  11  112345788888888888888876443

>KOG1009|consensus

Probab=99.53  E-value=1.1e-12  Score=111.32  Aligned_cols=118  Identities=16%  Similarity=0.327  Sum_probs=98.5

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECC--------C-----Ce--E--EEEecCCCceeeEEE-eCCceEE
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDIT--------N-----NN--L--RLKYAHSDPVLDCCF-QDAVHSF   72 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~--------~-----~~--~--~~~~~h~~~v~~~~~-~~~~~~~   72 (327)
                      -+.|+..|++++|+|+ +.+||+|+.+|.|.+|...        +     .+  +  +...+|.+.+..++| +++..+.
T Consensus        61 Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~  139 (434)
T KOG1009|consen   61 LSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV  139 (434)
T ss_pred             ccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence            3678899999999995 5799999999999999876        2     11  1  223368888999999 4788999


Q ss_pred             EEecCCcEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC
Q psy11885         73 SGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS  129 (327)
Q Consensus        73 sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~  129 (327)
                      +++.|.++++||+..+... .+..|...|..++|.|.++++++-+.|...+.+++...
T Consensus       140 s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~  197 (434)
T KOG1009|consen  140 SGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK  197 (434)
T ss_pred             eeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeee
Confidence            9999999999999988764 56789999999999999999999999997777776543

>KOG1007|consensus

Probab=99.52  E-value=6.1e-13  Score=108.25  Aligned_cols=152  Identities=18%  Similarity=0.317  Sum_probs=111.8

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE--E-----ecCCCceeeEEEe---CCceEEEEecCCcEEE
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL--K-----YAHSDPVLDCCFQ---DAVHSFSGGLDCTLKM   82 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~-----~~h~~~v~~~~~~---~~~~~~sgs~Dg~i~v   82 (327)
                      .+-+.|.|+.|.|++. .+++-. |..|.+|++..+..+.  .     .++.....+-+|+   +++++++.+ |+++..
T Consensus       121 eavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~  197 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQF  197 (370)
T ss_pred             HHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEE
Confidence            3446899999999654 555544 8999999998765321  1     1244556677773   677777776 999999


Q ss_pred             EEcCCCcee--eeecCCccEEEEEEeCCCC-EEEEEECCCeEEEEeCCCC-ceeeeeeCCCc-EEEEecC---CCeEEEE
Q psy11885         83 FDFNTQTET--VIGTHDQPIRAVEYSDEVN-CILTGSWDTSVKMWDPRSS-RCVGNYTQPDK-VFTMSLC---GEKFVVG  154 (327)
Q Consensus        83 wd~~~~~~~--~~~~h~~~V~~l~~~~~~~-~l~sgs~d~~i~lwdl~~~-~~~~~~~~~~~-~~~~~~~---~~~~~~~  154 (327)
                      ||+++..+.  +-..|..-|+.+.|.|+.+ .|+|++.||.||+||+|.- .+++++..+.. +.++.++   .+.++++
T Consensus       198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~  277 (370)
T KOG1007|consen  198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG  277 (370)
T ss_pred             EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence            999976543  3357888999999999875 5778999999999999874 46666665443 4455544   4468899


Q ss_pred             eCCCeEEEEECCC
Q psy11885        155 TAGRKVCIWDLRN  167 (327)
Q Consensus       155 ~~d~~v~iwD~~~  167 (327)
                      +.|..|.+|-...
T Consensus       278 ~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  278 GSDSAVNLSCASS  290 (370)
T ss_pred             CCCceeEEEeccc
Confidence            9999999997653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.2e-12  Score=119.49  Aligned_cols=203  Identities=12%  Similarity=0.094  Sum_probs=131.0

Q ss_pred             CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECC---CeEEEEeCCCCce--eeeeeCCCcEEEEecCCCeE
Q psy11885         77 DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWD---TSVKMWDPRSSRC--VGNYTQPDKVFTMSLCGEKF  151 (327)
Q Consensus        77 Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d---~~i~lwdl~~~~~--~~~~~~~~~~~~~~~~~~~~  151 (327)
                      +..|.+||.+......+..|...+....|+|||+.|+..+.+   ..|.+||+++++.  +..+........++++|+.+
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L  262 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL  262 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence            468999999876666667788889999999999999887754   3699999988753  33333334456788889888


Q ss_pred             EEEe-CCCeEEEE--ECCCCccceeeecccceeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccceeeeeeeee
Q psy11885        152 VVGT-AGRKVCIW--DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRI  227 (327)
Q Consensus       152 ~~~~-~d~~v~iw--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~h~~  227 (327)
                      +.+. .++.+.||  |+.+.... ..  ...........++|+++.++..+ .++...++.++........   + .+  
T Consensus       263 a~~~~~~g~~~Iy~~d~~~~~~~-~l--t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~---l-~~--  333 (429)
T PRK01742        263 AFASSKDGVLNIYVMGANGGTPS-QL--TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL---V-GG--  333 (429)
T ss_pred             EEEEecCCcEEEEEEECCCCCeE-ee--ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE---e-cC--
Confidence            8764 57766555  66544321 11  11111224456788887666554 3456666665543221100   0 00  


Q ss_pred             ccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        228 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       228 ~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                        .      . ...+|+|||+.|+.++.++. .+||+.+++.......+  ...+++|||||++|++++..+.
T Consensus       334 --~------~-~~~~~SpDG~~ia~~~~~~i-~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~  394 (429)
T PRK01742        334 --R------G-YSAQISADGKTLVMINGDNV-VKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGL  394 (429)
T ss_pred             --C------C-CCccCCCCCCEEEEEcCCCE-EEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCC
Confidence              0      0 24689999999988877664 45998887643222222  2356789999999999976443

>KOG1523|consensus

Probab=99.51  E-value=3.8e-12  Score=105.03  Aligned_cols=243  Identities=14%  Similarity=0.115  Sum_probs=166.2

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..+|+|.+|+++ ...+|++-....|.||...+.+    ...+..|...|+.++|. ..+.+++++.|....+|....+.
T Consensus        10 ~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen   10 LEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             cCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            468999999995 5678888888899999988776    23445799999999994 77899999999999999884332


Q ss_pred             ----eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceee---eeeCC--CcEEEE--ecCCCeEEEEeCCC
Q psy11885         90 ----ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVG---NYTQP--DKVFTM--SLCGEKFVVGTAGR  158 (327)
Q Consensus        90 ----~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~---~~~~~--~~~~~~--~~~~~~~~~~~~d~  158 (327)
                          ...+..++..++++.|+|..+.|++||.-..|.+|-.+.-+--+   .+..+  ..+.++  .+++-.+++|+.|+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence                23567889999999999999999999999999999886532111   12222  233444  44556788899999


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      ..|+|..-    +....+..-+        .|                  |........+..++.         ..-..+
T Consensus       169 k~rVfSay----IK~Vdekpap--------~p------------------Wgsk~PFG~lm~E~~---------~~ggwv  209 (361)
T KOG1523|consen  169 KCRVFSAY----IKGVDEKPAP--------TP------------------WGSKMPFGQLMSEAS---------SSGGWV  209 (361)
T ss_pred             ceeEEEEe----eeccccCCCC--------CC------------------CccCCcHHHHHHhhc---------cCCCce
Confidence            99998631    1000000000        01                  221111111111110         011257


Q ss_pred             eEEEEecCCCeEEEecCCCeEEEEeCCCce-eeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        239 NAISFHQEYNTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~dg~i~iWd~~~~~-~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      ..+.|+|+|..||=.+.|.++.+=|...+. .+......+-|..++.|=.+.+.+++|.+
T Consensus       210 h~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~  269 (361)
T KOG1523|consen  210 HGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYD  269 (361)
T ss_pred             eeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCC
Confidence            789999999999999999999998876654 34443333357778888777777766644

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.2e-11  Score=112.81  Aligned_cols=213  Identities=11%  Similarity=0.055  Sum_probs=135.6

Q ss_pred             CCCCeeEEEEecCCCcEEEEEE---CCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEE-ecCC--cEEEEEcC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASS---WDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSG-GLDC--TLKMFDFN   86 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sg-s~Dg--~i~vwd~~   86 (327)
                      +...+...+|+|++ +.|+..+   .+..|.+||+.+++..........+...+|+ ++..++.. +.++  .|.+||++
T Consensus       197 ~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~  275 (429)
T PRK03629        197 SPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  275 (429)
T ss_pred             CCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            34578899999975 5555433   2357999999988755444444445567885 77777643 4455  48889998


Q ss_pred             CCceeeeecCCccEEEEEEeCCCCEEEEEECC-CeEEEE--eCCCCceeeeeeCC--CcEEEEecCCCeEEEEeCC---C
Q psy11885         87 TQTETVIGTHDQPIRAVEYSDEVNCILTGSWD-TSVKMW--DPRSSRCVGNYTQP--DKVFTMSLCGEKFVVGTAG---R  158 (327)
Q Consensus        87 ~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d-~~i~lw--dl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d---~  158 (327)
                      ++....+..+...+....|+|||+.|+..+.+ +..++|  |+.+++........  .....++++|+.++..+.+   .
T Consensus       276 tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~  355 (429)
T PRK03629        276 SGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQ  355 (429)
T ss_pred             CCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCc
Confidence            87766555555567889999999988776654 444444  66665432221111  1235667788887765433   2


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      .|.+||+.+++.             ..                    +  ....                        ..
T Consensus       356 ~I~~~dl~~g~~-------------~~--------------------L--t~~~------------------------~~  376 (429)
T PRK03629        356 HIAKQDLATGGV-------------QV--------------------L--TDTF------------------------LD  376 (429)
T ss_pred             eEEEEECCCCCe-------------EE--------------------e--CCCC------------------------CC
Confidence            466677654320             00                    0  0000                        01


Q ss_pred             eEEEEecCCCeEEEecCCCe---EEEEeCCCceeeeecCcCCcceEEEEECC
Q psy11885        239 NAISFHQEYNTFATGGSDGY---VNIWDGFNKKRLCQFHRYDTGITSLCFSY  287 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~dg~---i~iWd~~~~~~~~~~~~~~~~v~~l~fsp  287 (327)
                      ...+|+|||+.|+.++.++.   ++++++ +++....+..++..+...+|||
T Consensus       377 ~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        377 ETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            23579999999998887764   677776 4555666777777788899998

>KOG0771|consensus

Probab=99.50  E-value=8.1e-13  Score=112.59  Aligned_cols=189  Identities=17%  Similarity=0.169  Sum_probs=129.5

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceee-e--
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETV-I--   93 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~-~--   93 (327)
                      .+++|+.+ +..|++++.||++|||++.+.+. .....|...|.++.|+ ++..+++-+.| ..+||+++++.... .  
T Consensus       148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            68999995 57899999999999999877764 3444688999999996 77799999999 99999999874321 1  


Q ss_pred             ecCCccEEEEEEeCCC---CE--EEEEECCCeEEEEeCCCCc---ee---eeeeC--CCcEEEEecCCCeEEEEeCCCeE
Q psy11885         94 GTHDQPIRAVEYSDEV---NC--ILTGSWDTSVKMWDPRSSR---CV---GNYTQ--PDKVFTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~---~~--l~sgs~d~~i~lwdl~~~~---~~---~~~~~--~~~~~~~~~~~~~~~~~~~d~~v  160 (327)
                      ..-+.-...+.|+.|+   .+  ++.-..-+.|+.||+..-+   .+   +....  ....++++.+|+.++.|+.||.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence            1122234556666555   22  2233344566766653211   11   11111  22346678889999999999999


Q ss_pred             EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885        161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA  240 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  240 (327)
                      -|++...++.+..               .+                                +.|         ...|+.
T Consensus       306 ai~~~~~lq~~~~---------------vk--------------------------------~aH---------~~~VT~  329 (398)
T KOG0771|consen  306 AIYDAKSLQRLQY---------------VK--------------------------------EAH---------LGFVTG  329 (398)
T ss_pred             EEEEeceeeeeEe---------------eh--------------------------------hhh---------eeeeee
Confidence            9999765432110               00                                112         225889


Q ss_pred             EEEecCCCeEEEecCCCeEEEEeCC
Q psy11885        241 ISFHQEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       241 v~~spd~~~lasgs~dg~i~iWd~~  265 (327)
                      +.|+||.+++++-|.|.++.+-.+.
T Consensus       330 ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  330 LTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EEEcCCcCcccccccCCceeEEEEe
Confidence            9999999999999999998888654

>KOG1188|consensus

Probab=99.48  E-value=2.3e-12  Score=107.13  Aligned_cols=194  Identities=14%  Similarity=0.170  Sum_probs=129.9

Q ss_pred             ceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeC--CCCEEEEEECCCeEEEEeCCCCceeeee--eC-C-CcE
Q psy11885         69 VHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSD--EVNCILTGSWDTSVKMWDPRSSRCVGNY--TQ-P-DKV  141 (327)
Q Consensus        69 ~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~--~~~~l~sgs~d~~i~lwdl~~~~~~~~~--~~-~-~~~  141 (327)
                      ..++++-+.|+|++||..+++. ..+..+...++.+.|..  .+..+++++.||+||+||+|+......+  .+ + ...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4567788899999999988654 34566777777888865  5678999999999999999986544333  22 2 234


Q ss_pred             EEEec--CCCeEEEEe----CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCC-CceEEEeecCeEEEEEccCCcc
Q psy11885        142 FTMSL--CGEKFVVGT----AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPE  214 (327)
Q Consensus       142 ~~~~~--~~~~~~~~~----~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~  214 (327)
                      .+++.  .++.+++|+    .+-.|.+||+|+.+..+......+.....+++|+|.. +.+++++.+|-+.++......+
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            55554  344566664    3557999999986653333333333346788999976 5567788888888755543322


Q ss_pred             cccceeeeeeeeeccCCeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCceeeee
Q psy11885        215 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQ  272 (327)
Q Consensus       215 ~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~~~~~  272 (327)
                      ..-+..          .+-+.+.|.++.|+.++ +.+..-+...+..+|+++.+.....
T Consensus       201 eDaL~~----------viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~  249 (376)
T KOG1188|consen  201 EDALLH----------VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW  249 (376)
T ss_pred             hhhHHH----------hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence            111110          01123458889997654 6688888999999999987764433

>KOG0642|consensus

Probab=99.47  E-value=9.3e-13  Score=115.99  Aligned_cols=209  Identities=13%  Similarity=0.168  Sum_probs=129.4

Q ss_pred             CceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-----------EEEEecCCCceeeEEEe-CCceEE
Q psy11885          5 KTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-----------LRLKYAHSDPVLDCCFQ-DAVHSF   72 (327)
Q Consensus         5 ~~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~h~~~v~~~~~~-~~~~~~   72 (327)
                      ++.+++.- |+++|.|+.+.++ ++.+.+||.||+|+.|++....           .....+|.+.|..++++ ...+++
T Consensus       335 epi~tfra-H~gPVl~v~v~~n-~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll  412 (577)
T KOG0642|consen  335 EPILTFRA-HEGPVLCVVVPSN-GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL  412 (577)
T ss_pred             eeeEEEec-ccCceEEEEecCC-ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee
Confidence            34555554 8899999999995 5789999999999999764221           12345799999999985 567899


Q ss_pred             EEecCCcEEEEEcCCCceeeee---cCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeeeeC-----C----C
Q psy11885         73 SGGLDCTLKMFDFNTQTETVIG---THDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNYTQ-----P----D  139 (327)
Q Consensus        73 sgs~Dg~i~vwd~~~~~~~~~~---~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~~-----~----~  139 (327)
                      ++|.||++|.|+.......++.   .|..+ .++++-... ...++...-+.-.+.|......+..+..     +    .
T Consensus       413 scs~DgTvr~w~~~~~~~~~f~~~~e~g~P-lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~  491 (577)
T KOG0642|consen  413 SCSSDGTVRLWEPTEESPCTFGEPKEHGYP-LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ  491 (577)
T ss_pred             eecCCceEEeeccCCcCccccCCccccCCc-ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence            9999999999987665543332   23222 344442211 1111111112222223222222222211     0    0


Q ss_pred             -cEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccc
Q psy11885        140 -KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM  218 (327)
Q Consensus       140 -~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  218 (327)
                       ..+...+.....+++..|+.|+++|..+++.+...                                            
T Consensus       492 in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~--------------------------------------------  527 (577)
T KOG0642|consen  492 INKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM--------------------------------------------  527 (577)
T ss_pred             cceEEecCCCCeeEecccCCceecccccccccchhe--------------------------------------------
Confidence             11222344566778888889999887765421000                                            


Q ss_pred             eeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885        219 KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       219 ~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~  273 (327)
                          ..|         .-.++++++.|+|-+|++|+.||.+++|.+.....+...
T Consensus       528 ----~a~---------~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es  569 (577)
T KOG0642|consen  528 ----VAH---------KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES  569 (577)
T ss_pred             ----eec---------cceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence                001         114678999999999999999999999998665554443

>KOG2139|consensus

Probab=99.45  E-value=8.3e-11  Score=98.81  Aligned_cols=149  Identities=15%  Similarity=0.272  Sum_probs=108.9

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEE-e-CCceEEEEecCCcEEEEEcCCCc---
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCF-Q-DAVHSFSGGLDCTLKMFDFNTQT---   89 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~-~-~~~~~~sgs~Dg~i~vwd~~~~~---   89 (327)
                      -.++.++|++. -.-+|++..|.+|++||-+.... ..+...+..|.+++| + .+..++.|. -+-|++|......   
T Consensus        99 ~dlr~~aWhqH-~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQH-IIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechh-hhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence            36788999984 34577889999999999877432 233335678999999 4 455666666 5569999765321   


Q ss_pred             ----------eeee--ecCCccEEEEEEeCCCCEEEEEEC-CCeEEEEeCCCCceeeee-eCCC--cEEEEecCCCeEEE
Q psy11885         90 ----------ETVI--GTHDQPIRAVEYSDEVNCILTGSW-DTSVKMWDPRSSRCVGNY-TQPD--KVFTMSLCGEKFVV  153 (327)
Q Consensus        90 ----------~~~~--~~h~~~V~~l~~~~~~~~l~sgs~-d~~i~lwdl~~~~~~~~~-~~~~--~~~~~~~~~~~~~~  153 (327)
                                ..++  .+| .+|+++.|.+||..+++++. |..|++||..++.++.-. ...+  ...-++++++.++.
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence                      0111  234 68999999999999999876 578999999988765543 2222  24568899999999


Q ss_pred             EeCCCeEEEEECCC
Q psy11885        154 GTAGRKVCIWDLRN  167 (327)
Q Consensus       154 ~~~d~~v~iwD~~~  167 (327)
                      ++.|+..++|...+
T Consensus       256 At~davfrlw~e~q  269 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQ  269 (445)
T ss_pred             ecccceeeeehhcc
Confidence            99999999996554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.2e-10  Score=106.70  Aligned_cols=200  Identities=13%  Similarity=0.076  Sum_probs=130.3

Q ss_pred             CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEec---CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEE
Q psy11885         38 CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGL---DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL  113 (327)
Q Consensus        38 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~---Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  113 (327)
                      ..|.++|..+........|...+.+.+|+ ++..++..+.   +..|.+||+.++....+..+.+.+....|+|||+.|+
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence            47889998776666666777889999995 7777776553   4689999998887666666666778899999998775


Q ss_pred             -EEECCCe--EEEEeCCCCceeeeeeCC--CcEEEEecCCCeEEEEeC-CC--eEEEEECCCCccceeeecccceeeeEE
Q psy11885        114 -TGSWDTS--VKMWDPRSSRCVGNYTQP--DKVFTMSLCGEKFVVGTA-GR--KVCIWDLRNMGYIMQRRESSLKFQTRC  185 (327)
Q Consensus       114 -sgs~d~~--i~lwdl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-d~--~v~iwD~~~~~~~~~~~~~~~~~~~~~  185 (327)
                       +.+.++.  |.+||+++++........  .....++++|..++..+. ++  .|.++|+.+.+.             ..
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-------------~~  328 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-------------RR  328 (435)
T ss_pred             EEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-------------EE
Confidence             5566655  777798877653322222  223567778887776653 22  455555432210             00


Q ss_pred             eEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCC---CeEEEE
Q psy11885        186 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD---GYVNIW  262 (327)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~d---g~i~iW  262 (327)
                                          +  .. ..                      ..+...+|+|||+.|+..+.+   ..|.+|
T Consensus       329 --------------------l--t~-~~----------------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~  363 (435)
T PRK05137        329 --------------------I--SF-GG----------------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVM  363 (435)
T ss_pred             --------------------e--ec-CC----------------------CcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence                                0  00 00                      012346799999999876543   368888


Q ss_pred             eCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        263 DGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       263 d~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      |...+. ...+.. ...+...+|||||+.|+..+.
T Consensus       364 d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        364 KPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             ECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEc
Confidence            875543 233322 224567899999999988765

>KOG4227|consensus

Probab=99.43  E-value=4e-11  Score=101.61  Aligned_cols=248  Identities=15%  Similarity=0.124  Sum_probs=159.6

Q ss_pred             CceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCC---ceeeEEEe-CCceEEEEecCCcE
Q psy11885          5 KTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSD---PVLDCCFQ-DAVHSFSGGLDCTL   80 (327)
Q Consensus         5 ~~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~---~v~~~~~~-~~~~~~sgs~Dg~i   80 (327)
                      +++..+.++|...|.|++|.. ++.+|.+|+.+++|.+.|+++.+.+..+.|..   .|..+..+ ..+.+++.+.++.|
T Consensus        95 KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V  173 (609)
T KOG4227|consen   95 KPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLV  173 (609)
T ss_pred             CCceeccCccccceEEEEEcc-CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceE
Confidence            445666788889999999998 67899999999999999999999887777765   67777764 56788899999999


Q ss_pred             EEEEcCCCc----eeeeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCc-eee------eeeCCC---cEEEEe
Q psy11885         81 KMFDFNTQT----ETVIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSR-CVG------NYTQPD---KVFTMS  145 (327)
Q Consensus        81 ~vwd~~~~~----~~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~-~~~------~~~~~~---~~~~~~  145 (327)
                      -+||+...+    ..++..-......+.|+|. ..+|++++..+.+-+||.+... .+.      .++...   ...-++
T Consensus       174 ~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~  253 (609)
T KOG4227|consen  174 SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS  253 (609)
T ss_pred             EEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence            999987544    1222333445677888885 5788899999999999987532 111      112211   223466


Q ss_pred             cCCCeEEEEeCCCeEEEEECCCCccceeeecccc-e----eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccc----
Q psy11885        146 LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSL-K----FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQ----  216 (327)
Q Consensus       146 ~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----  216 (327)
                      ++|+.|++--....-.+||+-.+.....+..+.- .    ...+.+. +.+...+++++..-.+.+|-+-..+...    
T Consensus       254 ~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~-F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~  332 (609)
T KOG4227|consen  254 PSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMT-FIDDYTVATGSDHWGIHIWKLPRANDSYGFTQ  332 (609)
T ss_pred             CCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeee-eecceeeeccCcccceEEEecCCCccccCccc
Confidence            7787776654444455667654332111111000 0    0112222 2333345556655555555432211100    


Q ss_pred             ---------------cceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEe
Q psy11885        217 ---------------KMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       217 ---------------~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd  263 (327)
                                     +....+++         |-+-++.+.|+|...+|++.+-...++||.
T Consensus       333 IG~~~~~~~~~~~i~~~~~VLrG---------HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  333 IGHDEEEMPSEIFIEKELTVLRG---------HRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             cCcchhhCchhheecceeEEEec---------ccccccceeecCCcceEeccchhhheeccc
Confidence                           00111223         334578999999999999999999999996

>KOG2110|consensus

Probab=99.43  E-value=3.3e-10  Score=95.46  Aligned_cols=232  Identities=15%  Similarity=0.170  Sum_probs=149.0

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEeCCceEEEEecC--CcEEEEEcCCCceee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQDAVHSFSGGLD--CTLKMFDFNTQTETV   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~~~~~~~sgs~D--g~i~vwd~~~~~~~~   92 (327)
                      ..|+.+.|..+ ...|..|+.||. ++|+.+.... -......-.|..+-|+.. .++-.+.+  ..+++.++.++...+
T Consensus         6 ~ti~~~~~Nqd-~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen    6 PTINFIGFNQD-STLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             cceeeeeeccc-eeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCceEE
Confidence            46777778874 456777777775 8888766442 111111122344445433 34433333  347888876554332


Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC----CCcEEEEecCCC--eEEEE--eCCCeEEEEE
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ----PDKVFTMSLCGE--KFVVG--TAGRKVCIWD  164 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~--~~d~~v~iwD  164 (327)
                      -..-..+|.+|.+..  ++|+..-.+. |.+||+++-+.+.++..    +....+++++..  +++.-  ...|.|.|||
T Consensus        83 e~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d  159 (391)
T KOG2110|consen   83 EIFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD  159 (391)
T ss_pred             EEecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence            222345688888865  6677777766 99999999998887653    233556666543  55542  3468999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEE-EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAA-VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      +.+.+.+..+..  +.....|+++++++..+++++..|+++ |+....++    ..++|+.      +. ....|.+++|
T Consensus       160 ~~nl~~v~~I~a--H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~----kl~eFRR------G~-~~~~IySL~F  226 (391)
T KOG2110|consen  160 TINLQPVNTINA--HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ----KLYEFRR------GT-YPVSIYSLSF  226 (391)
T ss_pred             cccceeeeEEEe--cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc----EeeeeeC------Cc-eeeEEEEEEE
Confidence            988776655543  334467899999999999999988864 33332222    2222221      00 1225889999


Q ss_pred             ecCCCeEEEecCCCeEEEEeCCC
Q psy11885        244 HQEYNTFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd~~~  266 (327)
                      |||+++|++.|..++|.||.+.+
T Consensus       227 s~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  227 SPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CCCCCeEEEecCCCeEEEEEecc
Confidence            99999999999999999998653

>KOG1523|consensus

Probab=99.40  E-value=1.1e-11  Score=102.28  Aligned_cols=193  Identities=15%  Similarity=0.208  Sum_probs=137.5

Q ss_pred             CccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc---eeeeeeCCC---cEEEEecCCCeEEEEeCCCeEEEEECCCCcc
Q psy11885         97 DQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR---CVGNYTQPD---KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGY  170 (327)
Q Consensus        97 ~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~  170 (327)
                      ..+|++.+|++|+..++.+-....|.+|....+.   ..+++..++   ..+++++..++|++++.|+.-.+|....+..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            4689999999999999999999999999876654   344554443   3455666788999999999999998854432


Q ss_pred             ceee-ecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe
Q psy11885        171 IMQR-RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT  249 (327)
Q Consensus       171 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~  249 (327)
                      -... ....+.-+..++.+.|..+.+++++....+.|++++....+-.-     .|.    .....+.|.+++|||+.-+
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs-----Khi----kkPirStv~sldWhpnnVL  160 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS-----KHI----KKPIRSTVTSLDWHPNNVL  160 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh-----hhh----CCccccceeeeeccCCcce
Confidence            1110 01112224678999999999999999999999888755433111     111    1122356899999999999


Q ss_pred             EEEecCCCeEEEEeCCCc------------------eeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        250 FATGGSDGYVNIWDGFNK------------------KRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       250 lasgs~dg~i~iWd~~~~------------------~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      ||+||.|+.+|+++..=.                  +.+..+....+.|..+.|||+|..||..+.+
T Consensus       161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd  227 (361)
T KOG1523|consen  161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD  227 (361)
T ss_pred             ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC
Confidence            999999999999974211                  1111222233469999999999999998754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.3e-10  Score=106.41  Aligned_cols=201  Identities=13%  Similarity=0.095  Sum_probs=128.5

Q ss_pred             CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC---CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEE
Q psy11885         38 CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD---CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL  113 (327)
Q Consensus        38 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D---g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  113 (327)
                      ..|.+||..+........+...+.+.+|+ ++..++..+.+   ..|.+||+.++....+....+...+..|+|||+.++
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA  263 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence            46999998776666566677788888995 77788876643   469999998877655554455556789999998775


Q ss_pred             -EEECCC--eEEEEeCCCCceeeeeeCC--CcEEEEecCCCeEEEEeC-CCe--EEEEECCCCccceeeecccceeeeEE
Q psy11885        114 -TGSWDT--SVKMWDPRSSRCVGNYTQP--DKVFTMSLCGEKFVVGTA-GRK--VCIWDLRNMGYIMQRRESSLKFQTRC  185 (327)
Q Consensus       114 -sgs~d~--~i~lwdl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-d~~--v~iwD~~~~~~~~~~~~~~~~~~~~~  185 (327)
                       +.+.++  .|.+||+.+++........  .....++++|..++..+. ++.  |.++|+.+.+.             . 
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-------------~-  329 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-------------E-  329 (433)
T ss_pred             EEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-------------E-
Confidence             556555  5999999887654322221  223567777887776653 333  33334332110             0 


Q ss_pred             eEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCC-C--eEEEE
Q psy11885        186 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD-G--YVNIW  262 (327)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~d-g--~i~iW  262 (327)
                                         .+. .. +            .           .....+|||||+.|+..+.+ +  .|.+|
T Consensus       330 -------------------~lt-~~-g------------~-----------~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~  365 (433)
T PRK04922        330 -------------------RLT-FQ-G------------N-----------YNARASVSPDGKKIAMVHGSGGQYRIAVM  365 (433)
T ss_pred             -------------------Eee-cC-C------------C-----------CccCEEECCCCCEEEEEECCCCceeEEEE
Confidence                               000 00 0            0           01246899999999865433 2  69999


Q ss_pred             eCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        263 DGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       263 d~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      |+.+++.. .+.. .......+|||||++|+.++..
T Consensus       366 d~~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        366 DLSTGSVR-TLTP-GSLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             ECCCCCeE-ECCC-CCCCCCceECCCCCEEEEEEec
Confidence            98776543 3332 2234567999999999888653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=3.8e-10  Score=102.91  Aligned_cols=202  Identities=7%  Similarity=-0.003  Sum_probs=127.2

Q ss_pred             CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEec---CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEE
Q psy11885         38 CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGL---DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL  113 (327)
Q Consensus        38 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~---Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  113 (327)
                      ..|.+||...........+...+.+.+|+ ++..++..+.   +..|.+|++.++....+......+..+.|+|||+.|+
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence            37999998776655555566778889995 7777775432   4578999998876555443344455789999999887


Q ss_pred             EE-ECCC--eEEEEeCCCCceeeeeeCC--CcEEEEecCCCeEEEEeCC-CeEEEE--ECCCCccceeeecccceeeeEE
Q psy11885        114 TG-SWDT--SVKMWDPRSSRCVGNYTQP--DKVFTMSLCGEKFVVGTAG-RKVCIW--DLRNMGYIMQRRESSLKFQTRC  185 (327)
Q Consensus       114 sg-s~d~--~i~lwdl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d-~~v~iw--D~~~~~~~~~~~~~~~~~~~~~  185 (327)
                      .. +.++  .|.+||+++++........  .....++++|+.++..+.+ +..+||  |+.+.+.             . 
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-------------~-  324 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-------------Q-  324 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-------------E-
Confidence            54 4444  5889999887654433222  2345677788887766643 344444  3322110             0 


Q ss_pred             eEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCC---CeEEEE
Q psy11885        186 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD---GYVNIW  262 (327)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~d---g~i~iW  262 (327)
                                         .+. +..                        ......+|+|||+.|+..+.+   ..|++|
T Consensus       325 -------------------~lt-~~~------------------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~  360 (429)
T PRK03629        325 -------------------RIT-WEG------------------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  360 (429)
T ss_pred             -------------------Eee-cCC------------------------CCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence                               000 000                        012346899999998765543   358889


Q ss_pred             eCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        263 DGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       263 d~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      |+.+++. ..+... ......+|||||++|+.++.++
T Consensus       361 dl~~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~  395 (429)
T PRK03629        361 DLATGGV-QVLTDT-FLDETPSIAPNGTMVIYSSSQG  395 (429)
T ss_pred             ECCCCCe-EEeCCC-CCCCCceECCCCCEEEEEEcCC
Confidence            9887753 333221 1234678999999999998643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.5e-10  Score=105.94  Aligned_cols=213  Identities=13%  Similarity=0.076  Sum_probs=133.8

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECC---CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCC--cEEEEEcC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWD---CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDC--TLKMFDFN   86 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg--~i~vwd~~   86 (327)
                      +...+...+|+|++ +.|+..+.+   ..|.+||+.+++......+.....+..|+ ++..++ +.+.++  .|.+||+.
T Consensus       202 ~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~  280 (433)
T PRK04922        202 SAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG  280 (433)
T ss_pred             CCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence            44578899999965 566665533   46999999888765444444445567885 676664 556665  58889998


Q ss_pred             CCceeeeecCCccEEEEEEeCCCCEEEEEEC-CCe--EEEEeCCCCceeeeeeC--CCcEEEEecCCCeEEEEeCCC---
Q psy11885         87 TQTETVIGTHDQPIRAVEYSDEVNCILTGSW-DTS--VKMWDPRSSRCVGNYTQ--PDKVFTMSLCGEKFVVGTAGR---  158 (327)
Q Consensus        87 ~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~-d~~--i~lwdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~---  158 (327)
                      ++....+..+.......+|+|||+.|+..+. ++.  |.++|+.+++.......  ......++++|+.++..+.++   
T Consensus       281 ~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~  360 (433)
T PRK04922        281 SRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQY  360 (433)
T ss_pred             CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCce
Confidence            8776555555555567899999998887664 444  66667766653322111  122356778888877654332   


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      .|.+||+.+.+..             .                       +..+.                       ..
T Consensus       361 ~I~v~d~~~g~~~-------------~-----------------------Lt~~~-----------------------~~  381 (433)
T PRK04922        361 RIAVMDLSTGSVR-------------T-----------------------LTPGS-----------------------LD  381 (433)
T ss_pred             eEEEEECCCCCeE-------------E-----------------------CCCCC-----------------------CC
Confidence            5778887543210             0                       00000                       01


Q ss_pred             eEEEEecCCCeEEEecCC---CeEEEEeCCCceeeeecCcCCcceEEEEECC
Q psy11885        239 NAISFHQEYNTFATGGSD---GYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  287 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~d---g~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp  287 (327)
                      ...+|+|||+.|+..+.+   +.+.+++.. +.....+..+...+...+|||
T Consensus       382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        382 ESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            135789999988766553   357888875 444555544445677788887

>KOG0290|consensus

Probab=99.38  E-value=4.1e-11  Score=97.83  Aligned_cols=160  Identities=20%  Similarity=0.260  Sum_probs=121.1

Q ss_pred             ecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----EEEEecCCCceeeEEEeC--CceEEEEecCCcEEE
Q psy11885          9 SLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LRLKYAHSDPVLDCCFQD--AVHSFSGGLDCTLKM   82 (327)
Q Consensus         9 ~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~h~~~v~~~~~~~--~~~~~sgs~Dg~i~v   82 (327)
                      .+++.+-+.+|+..|...+..++.+.|.|-+..|||++.+.    ...+.+|.+.|..++|..  ...++|.|.||+||+
T Consensus       144 ~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRm  223 (364)
T KOG0290|consen  144 NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRM  223 (364)
T ss_pred             CcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEE
Confidence            34556667899999998778899999999999999999873    234568999999999974  457779999999999


Q ss_pred             EEcCCCceee-e-e--cCCccEEEEEEeC-CCCEEEEEEC-CCeEEEEeCCCC-ceeeeeeCC---CcEEEEecC-CCeE
Q psy11885         83 FDFNTQTETV-I-G--THDQPIRAVEYSD-EVNCILTGSW-DTSVKMWDPRSS-RCVGNYTQP---DKVFTMSLC-GEKF  151 (327)
Q Consensus        83 wd~~~~~~~~-~-~--~h~~~V~~l~~~~-~~~~l~sgs~-d~~i~lwdl~~~-~~~~~~~~~---~~~~~~~~~-~~~~  151 (327)
                      ||++...... + .  ....+...|+|++ |.+++++-.. ..+|.+.|+|.. ..+.++..+   ...+++.+. ...+
T Consensus       224 FDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hi  303 (364)
T KOG0290|consen  224 FDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHI  303 (364)
T ss_pred             EEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCcee
Confidence            9998765432 2 1  2245677888886 4577777554 468999999874 344555443   334556654 5679


Q ss_pred             EEEeCCCeEEEEECCCC
Q psy11885        152 VVGTAGRKVCIWDLRNM  168 (327)
Q Consensus       152 ~~~~~d~~v~iwD~~~~  168 (327)
                      .+++.|..+.+||+.++
T Consensus       304 ctaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  304 CTAGDDCQALIWDLQQM  320 (364)
T ss_pred             eecCCcceEEEEecccc
Confidence            99999999999999864

>KOG4497|consensus

Probab=99.38  E-value=4.7e-10  Score=93.29  Aligned_cols=273  Identities=12%  Similarity=0.138  Sum_probs=170.6

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceE-EEEecCCcEEEEEcCCCceee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHS-FSGGLDCTLKMFDFNTQTETV   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~-~sgs~Dg~i~vwd~~~~~~~~   92 (327)
                      +.|.-|.|.-++...|.....|+.|++|++.+.+-.... ..+.++.+.+|+ ++.++ .+...|-.|.+|.+.+.....
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            345667888766556777788999999999988854444 456678889995 66454 577789999999999877665


Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCe---E-----------EEEeCCC-----------Cceeeee-----------e
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTS---V-----------KMWDPRS-----------SRCVGNY-----------T  136 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~---i-----------~lwdl~~-----------~~~~~~~-----------~  136 (327)
                      ++-.+..+..++|++||++.+..+....   +           +-+++.+           +..+..+           +
T Consensus       129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe  208 (447)
T KOG4497|consen  129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE  208 (447)
T ss_pred             ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence            5544556788999999988776665321   0           1111111           1111111           1


Q ss_pred             --CCCcEEEEecCCCeEEEEeCCCeEEEEECCCCcc------c------------------ee-----------------
Q psy11885        137 --QPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGY------I------------------MQ-----------------  173 (327)
Q Consensus       137 --~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~------~------------------~~-----------------  173 (327)
                        .......++++++.+++|+.|+.+|+.+--+-+.      .                  .+                 
T Consensus       209 ~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~  288 (447)
T KOG4497|consen  209 RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHI  288 (447)
T ss_pred             eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCc
Confidence              1123456778899999999999988743110000      0                  00                 


Q ss_pred             ------eec--------------cccee---eeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccC
Q psy11885        174 ------RRE--------------SSLKF---QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED  230 (327)
Q Consensus       174 ------~~~--------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~  230 (327)
                            +.+              .+.+.   ...-++++++....++-...-...+|.||.....  +      |..   
T Consensus       289 ~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~--l------~av---  357 (447)
T KOG4497|consen  289 WEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK--L------HAV---  357 (447)
T ss_pred             cccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh--h------hhh---
Confidence                  000              00000   0122455555555555444555677888764321  1      110   


Q ss_pred             CeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885        231 GIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       231 ~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                       +....+|.+..|+|....|+.......+++|.......++.-. ..-.|.++.|..+|..++.-+.+..-
T Consensus       358 -LiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDafc  426 (447)
T KOG4497|consen  358 -LIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAFC  426 (447)
T ss_pred             -hhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCceE
Confidence             1123478899999999999888777789999876655555432 22468999999999999988765543

>KOG2321|consensus

Probab=99.37  E-value=1.1e-10  Score=103.37  Aligned_cols=224  Identities=19%  Similarity=0.373  Sum_probs=151.2

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-----------------------------cCC-------Cc
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-----------------------------AHS-------DP   59 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------------------------~h~-------~~   59 (327)
                      ..-+.|..+|++..+||+|-+.-.|++||+.+-.+..-.                             .|.       ..
T Consensus        52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~R  131 (703)
T KOG2321|consen   52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTR  131 (703)
T ss_pred             cccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeee
Confidence            345789999987656777888899999998654432110                             010       00


Q ss_pred             ----eeeEEEe-CCceEEEEecCCcEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceee
Q psy11885         60 ----VLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVG  133 (327)
Q Consensus        60 ----v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~  133 (327)
                          ...++++ ...-++.++....|.-++++.++.. .+....+.++++..++...+|+.|+.||.|..||.++...+.
T Consensus       132 IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~  211 (703)
T KOG2321|consen  132 IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG  211 (703)
T ss_pred             cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhe
Confidence                1122222 2234566776778888888877643 344455789999999999999999999999999999877665


Q ss_pred             eeeCCC------------cEEEEec--CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe
Q psy11885        134 NYTQPD------------KVFTMSL--CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS  199 (327)
Q Consensus       134 ~~~~~~------------~~~~~~~--~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (327)
                      .+....            .+.++.+  +|-.+++|+.+|.|.|+|+|+.+..+..                         
T Consensus       212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-------------------------  266 (703)
T KOG2321|consen  212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-------------------------  266 (703)
T ss_pred             eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-------------------------
Confidence            553211            2445544  4667999999999999999975422110                         


Q ss_pred             ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC--CCeEEEecCCCeEEEEeCCCceeeeecCcCC
Q psy11885        200 IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFATGGSDGYVNIWDGFNKKRLCQFHRYD  277 (327)
Q Consensus       200 ~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd--~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~  277 (327)
                                              .|...       .||..+.|.+.  +..++|. +...++|||-.+|+....+.. .
T Consensus       267 ------------------------dh~~e-------~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t  313 (703)
T KOG2321|consen  267 ------------------------DHGYE-------LPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-T  313 (703)
T ss_pred             ------------------------ccCCc-------cceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-c
Confidence                                    00000       13555666554  3345554 346799999999998877753 4


Q ss_pred             cceEEEEECCCCCEEEEEEc
Q psy11885        278 TGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       278 ~~v~~l~fspdg~~la~~~~  297 (327)
                      ..+..+++=|++-++.+|-.
T Consensus       314 ~~lND~C~~p~sGm~f~Ane  333 (703)
T KOG2321|consen  314 SDLNDFCFVPGSGMFFTANE  333 (703)
T ss_pred             CCcCceeeecCCceEEEecC
Confidence            46899999999999998843

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=2.7e-10  Score=103.96  Aligned_cols=203  Identities=15%  Similarity=0.155  Sum_probs=126.1

Q ss_pred             CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC---CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEE
Q psy11885         38 CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD---CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL  113 (327)
Q Consensus        38 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D---g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  113 (327)
                      ..|.++|..+........+...+.+.+|+ ++..++..+.+   ..|.+||+.++....+....+.+....|+|||+.|+
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  255 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA  255 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            46777777555555555677788888995 77788766543   359999998887655544445567889999998876


Q ss_pred             -EEECCCeEEEEe--CCCCceeeeeeCC---CcEEEEecCCCeEEEEeC-CCeEEEEECCCCccceeeecccceeeeEEe
Q psy11885        114 -TGSWDTSVKMWD--PRSSRCVGNYTQP---DKVFTMSLCGEKFVVGTA-GRKVCIWDLRNMGYIMQRRESSLKFQTRCI  186 (327)
Q Consensus       114 -sgs~d~~i~lwd--l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~  186 (327)
                       +.+.++..++|.  +.+++. ..+...   .....++++|..++..+. ++...||.+....        .   ...  
T Consensus       256 ~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--------g---~~~--  321 (427)
T PRK02889        256 VALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--------G---AAQ--  321 (427)
T ss_pred             EEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--------C---ceE--
Confidence             567787766665  444432 333221   223467778887776553 3455555432100        0   000  


Q ss_pred             EEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCC---eEEEEe
Q psy11885        187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG---YVNIWD  263 (327)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg---~i~iWd  263 (327)
                                        .+. .. +.                       .....+|||||++|+..+.++   .|++||
T Consensus       322 ------------------~lt-~~-g~-----------------------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d  358 (427)
T PRK02889        322 ------------------RVT-FT-GS-----------------------YNTSPRISPDGKLLAYISRVGGAFKLYVQD  358 (427)
T ss_pred             ------------------EEe-cC-CC-----------------------CcCceEECCCCCEEEEEEccCCcEEEEEEE
Confidence                              000 00 00                       012357999999998766543   699999


Q ss_pred             CCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        264 GFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       264 ~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      +.+++.. .+... ......+|||||++|+.++...
T Consensus       359 ~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        359 LATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CCCCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence            8877543 33222 2346789999999999987543

>KOG1310|consensus

Probab=99.36  E-value=9.8e-12  Score=109.44  Aligned_cols=116  Identities=20%  Similarity=0.189  Sum_probs=88.3

Q ss_pred             EecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCcee--eeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCC
Q psy11885         53 KYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTET--VIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPR  127 (327)
Q Consensus        53 ~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~--~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~  127 (327)
                      +.+|++-|+++.| .+|..|+|||.|-.+.|||.-..+..  .-.+|.+.|-++.|-|.  ...++||..|..|+++|+.
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~  125 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD  125 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence            4579999999999 49999999999999999998754442  33579999999999884  4678999999999999997


Q ss_pred             CCceee----------eee---CCCcEEEEecC-CCeEEEEeCCCeEEEEECCCC
Q psy11885        128 SSRCVG----------NYT---QPDKVFTMSLC-GEKFVVGTAGRKVCIWDLRNM  168 (327)
Q Consensus       128 ~~~~~~----------~~~---~~~~~~~~~~~-~~~~~~~~~d~~v~iwD~~~~  168 (327)
                      ..+--.          .+.   ...+-++..+. ++.+.++++||++|-+|+|..
T Consensus       126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            532111          010   11122333444 478999999999999999863

>KOG0322|consensus

Probab=99.36  E-value=1.2e-11  Score=99.60  Aligned_cols=152  Identities=19%  Similarity=0.314  Sum_probs=110.4

Q ss_pred             CCCCeeEEEEecCC-CcEEE-EEECCCcEEEEECCCCeE-E----------EEecCCCceeeEEE-eCCceEEEEecCCc
Q psy11885         14 PEDGITAVKFAPNS-NQFLL-ASSWDCNVSLYDITNNNL-R----------LKYAHSDPVLDCCF-QDAVHSFSGGLDCT   79 (327)
Q Consensus        14 ~~~~I~~i~fs~~~-~~~l~-s~~~d~~i~iwd~~~~~~-~----------~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~   79 (327)
                      ..+.+.|..+.-+. ..+|+ +|=.+|.+-+||+..+.. .          ....|..+|.++.| +.-..=++|+.+..
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            34677777755433 33444 455679999999998731 1          12358899999988 33445578888999


Q ss_pred             EEEEEcCCCc--ee---eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCCeE
Q psy11885         80 LKMFDFNTQT--ET---VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGEKF  151 (327)
Q Consensus        80 i~vwd~~~~~--~~---~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~~~  151 (327)
                      +.+|.++-..  ..   .+...+..|..+.+-||++.++|+++|++||+|..++..++..+..+ ..+  .++++..+.+
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM  308 (323)
T ss_pred             ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence            9999987432  21   12222345888999999999999999999999999999888776543 334  4555555689


Q ss_pred             EEEeCCCeEEEEEC
Q psy11885        152 VVGTAGRKVCIWDL  165 (327)
Q Consensus       152 ~~~~~d~~v~iwD~  165 (327)
                      ++++.|..|.+|++
T Consensus       309 AaaskD~rISLWkL  322 (323)
T KOG0322|consen  309 AAASKDARISLWKL  322 (323)
T ss_pred             hhccCCceEEeeec
Confidence            99999999999986

>KOG1240|consensus

Probab=99.35  E-value=2.4e-10  Score=109.27  Aligned_cols=250  Identities=14%  Similarity=0.090  Sum_probs=154.7

Q ss_pred             EECCCCeEEEEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCCCc-------e-eeeecCCccEEEEEEeCCCCEE
Q psy11885         43 YDITNNNLRLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQT-------E-TVIGTHDQPIRAVEYSDEVNCI  112 (327)
Q Consensus        43 wd~~~~~~~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~-------~-~~~~~h~~~V~~l~~~~~~~~l  112 (327)
                      |+..+--+.....|...+..++.+  .+..++|||.||+||+|+...-.       . .+.......+.++...+.++.+
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            666444456667888888888874  44789999999999999976421       1 1222245678999999999999


Q ss_pred             EEEECCCeEEEEeCCCCce-----ee----eeeCCCcEEEEec----CCC-eEEEEeCCCeEEEEECCCCccceeeeccc
Q psy11885        113 LTGSWDTSVKMWDPRSSRC-----VG----NYTQPDKVFTMSL----CGE-KFVVGTAGRKVCIWDLRNMGYIMQRRESS  178 (327)
Q Consensus       113 ~sgs~d~~i~lwdl~~~~~-----~~----~~~~~~~~~~~~~----~~~-~~~~~~~d~~v~iwD~~~~~~~~~~~~~~  178 (327)
                      +.++.||.|++.++...+.     .+    .....+.+..+..    .+. .++.++.-+.|..||+|+...........
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence            9999999999999875221     11    1112233333221    122 57778888999999999764322211111


Q ss_pred             ceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC---CeEEEecC
Q psy11885        179 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY---NTFATGGS  255 (327)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~---~~lasgs~  255 (327)
                      .......++..|...-+++|+..|...+|.+-.+....       .+..     .+..++..+..+|-.   +..++++.
T Consensus      1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~-------sw~~-----P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL-------SWEH-----PARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             cccceeEEEecCCceEEEEecCCceEEEEEeecCceee-------cccC-----cccCCcceEEeeccCCCCceEEEecc
Confidence            12234566667777778888888886664433222111       1111     111355666666543   45555544


Q ss_pred             --CCeEEEEeCCCceeeeecCcC-------------------CcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        256 --DGYVNIWDGFNKKRLCQFHRY-------------------DTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       256 --dg~i~iWd~~~~~~~~~~~~~-------------------~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                        .+.|-+|++.+|.+...+...                   .......++..-+..+.+|++++..+.+
T Consensus      1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~w 1331 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKW 1331 (1431)
T ss_pred             cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeec
Confidence              578999999988655444321                   1122334565556677788888888766

>KOG0644|consensus

Probab=99.35  E-value=1.4e-12  Score=119.67  Aligned_cols=232  Identities=15%  Similarity=0.154  Sum_probs=154.0

Q ss_pred             EecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885         53 KYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR  130 (327)
Q Consensus        53 ~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~  130 (327)
                      +.+|-.+|.|+.| -.+.++++|+.|..+++|..++..+. ...+|++.|+.++.+.+.-.++++|.|..||+|.++++.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence            3468888999998 47899999999999999998877653 467999999999999888899999999999999999999


Q ss_pred             eeeeeeCC-CcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccce----eeeEEeEEeeCCCceEEEeecCeEE
Q psy11885        131 CVGNYTQP-DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK----FQTRCIKCFPNKQGYVLSSIEGRAA  205 (327)
Q Consensus       131 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  205 (327)
                      ++..+.++ +.+.++.+.+.  .+.+.||++++||.| ....... ...+.    .....+.+..+...+.+++.++...
T Consensus       266 pvsvLrghtgavtaiafsP~--~sss~dgt~~~wd~r-~~~~~y~-prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~  341 (1113)
T KOG0644|consen  266 PVSVLRGHTGAVTAIAFSPR--ASSSDDGTCRIWDAR-LEPRIYV-PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR  341 (1113)
T ss_pred             hHHHHhccccceeeeccCcc--ccCCCCCceEecccc-ccccccC-CCCCCcccccceeeeeccccccccccccCCcccc
Confidence            88776654 45666666654  377889999999988 2111110 00000    0011222222333333443333222


Q ss_pred             EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEE
Q psy11885        206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC  284 (327)
Q Consensus       206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~  284 (327)
                      .+-.+  ..        .++..         .+.-+.++.|. .+.+++-.+..+.+|++.+|..++.+.+|...+..|.
T Consensus       342 n~e~~--~l--------~~~~~---------~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd  402 (1113)
T KOG0644|consen  342 NHEFE--QL--------AWRSN---------LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD  402 (1113)
T ss_pred             cchhh--Hh--------hhhcc---------ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeee
Confidence            11100  00        00100         01112222222 3556666778899999999999988889998999999


Q ss_pred             ECCCCCEEEEEEccccccCCCCC
Q psy11885        285 FSYDGNVLAIACSYNYELETPPD  307 (327)
Q Consensus       285 fspdg~~la~~~~~~~~~~~~~~  307 (327)
                      |+|-+..+|...+++.-...|-.
T Consensus       403 ~Hpfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  403 VHPFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             ecCCCcHhhhhccCCCceEeeec
Confidence            99988888877666555555533

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=5.6e-10  Score=101.85  Aligned_cols=214  Identities=11%  Similarity=0.050  Sum_probs=130.3

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECC---CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcC--
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWD---CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFN--   86 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~--   86 (327)
                      +.+.+.+.+|+|++ +.|+..+.+   ..|.+||+.+++........+.+...+|+ ++..++ +.+.++...+|.++  
T Consensus       194 ~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~  272 (427)
T PRK02889        194 SPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD  272 (427)
T ss_pred             CCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence            44678899999975 556655532   35999999988765544444556677885 676665 67778887777654  


Q ss_pred             CCceeeeecCCccEEEEEEeCCCCEEEEEEC-CCeEEEEeC--CCCceeee-eeCC-CcEEEEecCCCeEEEEeCCC---
Q psy11885         87 TQTETVIGTHDQPIRAVEYSDEVNCILTGSW-DTSVKMWDP--RSSRCVGN-YTQP-DKVFTMSLCGEKFVVGTAGR---  158 (327)
Q Consensus        87 ~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~-d~~i~lwdl--~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~d~---  158 (327)
                      ++....+..+........|+|||+.|+..+. ++...+|.+  .+++.... +... .....++++|+.++..+.++   
T Consensus       273 ~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~  352 (427)
T PRK02889        273 GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAF  352 (427)
T ss_pred             CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence            4444444445555567889999998876554 466666654  44432221 1111 12346778888877665443   


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      .|.+||+.+.+..             .                    +  ... .                       ..
T Consensus       353 ~I~v~d~~~g~~~-------------~--------------------l--t~~-~-----------------------~~  373 (427)
T PRK02889        353 KLYVQDLATGQVT-------------A--------------------L--TDT-T-----------------------RD  373 (427)
T ss_pred             EEEEEECCCCCeE-------------E--------------------c--cCC-C-----------------------Cc
Confidence            5777877543200             0                    0  000 0                       01


Q ss_pred             eEEEEecCCCeEEEecCCC---eEEEEeCCCceeeeecCcCCcceEEEEECCC
Q psy11885        239 NAISFHQEYNTFATGGSDG---YVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  288 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~dg---~i~iWd~~~~~~~~~~~~~~~~v~~l~fspd  288 (327)
                      ...+|+|||+.|+.++.++   .+.+-+. +++....+..+.+.+...+|||-
T Consensus       374 ~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        374 ESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             cCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            2468999999988776543   2445555 45545555444455677888884

>KOG3881|consensus

Probab=99.35  E-value=1.8e-10  Score=97.60  Aligned_cols=212  Identities=19%  Similarity=0.231  Sum_probs=143.7

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-----EEEEecCCCceeeEEEe--CCceEEEEecC--CcEEEEEc
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-----LRLKYAHSDPVLDCCFQ--DAVHSFSGGLD--CTLKMFDF   85 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~h~~~v~~~~~~--~~~~~~sgs~D--g~i~vwd~   85 (327)
                      .+.|..++...   .+|++|-.+|.+++|..+.+.     +.....+ .++..+.-.  ....+++||..  ..+++||+
T Consensus       105 ~~~I~gl~~~d---g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl  180 (412)
T KOG3881|consen  105 TKSIKGLKLAD---GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDL  180 (412)
T ss_pred             cccccchhhcC---CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeec
Confidence            34555555442   478888889999999998443     2222222 344444443  33456679988  88999999


Q ss_pred             CCCceeeeec---------CCccE--EEEEEeCC--CCEEEEEECCCeEEEEeCCC-CceeeeeeC---CCcEEEEecCC
Q psy11885         86 NTQTETVIGT---------HDQPI--RAVEYSDE--VNCILTGSWDTSVKMWDPRS-SRCVGNYTQ---PDKVFTMSLCG  148 (327)
Q Consensus        86 ~~~~~~~~~~---------h~~~V--~~l~~~~~--~~~l~sgs~d~~i~lwdl~~-~~~~~~~~~---~~~~~~~~~~~  148 (327)
                      +.... +...         -.-||  +++.|-+.  ...|++++.-+.+|+||.+. ++++..+..   +...+...+.+
T Consensus       181 e~~~q-iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g  259 (412)
T KOG3881|consen  181 EQSKQ-IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG  259 (412)
T ss_pred             cccee-eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence            87733 2221         11233  56778776  78899999999999999986 456666553   33455667889


Q ss_pred             CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeec
Q psy11885        149 EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK  228 (327)
Q Consensus       149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~  228 (327)
                      +.+++|...+.+..||+|+++....                          .        +..                 
T Consensus       260 n~Iy~gn~~g~l~~FD~r~~kl~g~--------------------------~--------~kg-----------------  288 (412)
T KOG3881|consen  260 NFIYTGNTKGQLAKFDLRGGKLLGC--------------------------G--------LKG-----------------  288 (412)
T ss_pred             cEEEEecccchhheecccCceeecc--------------------------c--------cCC-----------------
Confidence            9999999999999999997642100                          0        000                 


Q ss_pred             cCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCC
Q psy11885        229 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  288 (327)
Q Consensus       229 ~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspd  288 (327)
                           ....+.++-.||..+++|++|-|+.+||+|+.+.+.+.+..- .+..++|-+.++
T Consensus       289 -----~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~  342 (412)
T KOG3881|consen  289 -----ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD  342 (412)
T ss_pred             -----ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence                 001356777899999999999999999999998776655432 234677777664

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.34  E-value=8e-11  Score=95.26  Aligned_cols=117  Identities=22%  Similarity=0.398  Sum_probs=85.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEE-EECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC---CcEEEEEcC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLA-SSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD---CTLKMFDFN   86 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D---g~i~vwd~~   86 (327)
                      ...++.|.+++|+|++.+++++ |..+..|.+||++...+. .+ +...++.+.|+ .+.+++.|+.+   |.|.+||++
T Consensus        56 l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~-~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   56 LKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIF-SF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             ccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeE-ee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            3345579999999987666544 456789999999743333 33 34567889995 78888887654   669999998


Q ss_pred             CCceeeeecCCccEEEEEEeCCCCEEEEEEC------CCeEEEEeCCCCcee
Q psy11885         87 TQTETVIGTHDQPIRAVEYSDEVNCILTGSW------DTSVKMWDPRSSRCV  132 (327)
Q Consensus        87 ~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~------d~~i~lwdl~~~~~~  132 (327)
                      +........|. .+..++|+|+|++|++++.      |+.++||+.. |+.+
T Consensus       134 ~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l  183 (194)
T PF08662_consen  134 KKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLL  183 (194)
T ss_pred             CCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEe
Confidence            65544434444 4789999999999999864      7788888874 4443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=7.8e-10  Score=101.30  Aligned_cols=152  Identities=15%  Similarity=0.071  Sum_probs=101.3

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEEC---CCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCc--EEEEEc
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSW---DCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCT--LKMFDF   85 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~--i~vwd~   85 (327)
                      .+...+...+|+|++ +.|+..+.   +..|.+||+.+++......+.+.+...+|+ ++..++ +.+.++.  |.+||+
T Consensus       199 ~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  277 (435)
T PRK05137        199 DGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL  277 (435)
T ss_pred             cCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence            355689999999975 55665543   468999999988866555566667778885 676664 6666665  666788


Q ss_pred             CCCceeeeecCCccEEEEEEeCCCCEEEEEEC-CC--eEEEEeCCCCceeeeeeCC--CcEEEEecCCCeEEEEeCC---
Q psy11885         86 NTQTETVIGTHDQPIRAVEYSDEVNCILTGSW-DT--SVKMWDPRSSRCVGNYTQP--DKVFTMSLCGEKFVVGTAG---  157 (327)
Q Consensus        86 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~-d~--~i~lwdl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d---  157 (327)
                      +++....+..+........|+|||+.|+..+. ++  .|.++|+.+++........  .....++++|+.++....+   
T Consensus       278 ~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~  357 (435)
T PRK05137        278 RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQ  357 (435)
T ss_pred             CCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCc
Confidence            87766666556666677899999998887664 33  6778888765543222111  1224567778777765432   


Q ss_pred             CeEEEEEC
Q psy11885        158 RKVCIWDL  165 (327)
Q Consensus       158 ~~v~iwD~  165 (327)
                      ..|.+||+
T Consensus       358 ~~i~~~d~  365 (435)
T PRK05137        358 FSIGVMKP  365 (435)
T ss_pred             eEEEEEEC
Confidence            23555554

>KOG2394|consensus

Probab=99.34  E-value=1.8e-10  Score=101.41  Aligned_cols=190  Identities=13%  Similarity=0.170  Sum_probs=121.9

Q ss_pred             CCceEEEEecCCcEEEEEcCCCceee-e----ecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeeeCCCc
Q psy11885         67 DAVHSFSGGLDCTLKMFDFNTQTETV-I----GTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK  140 (327)
Q Consensus        67 ~~~~~~sgs~Dg~i~vwd~~~~~~~~-~----~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~  140 (327)
                      ++-.++.|=.-|.|.+.|........ +    .-....|+++.|-|- ...++.+..+|.+.++|..-.-     .....
T Consensus       184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-----~~t~p  258 (636)
T KOG2394|consen  184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-----GATAP  258 (636)
T ss_pred             CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-----cCCCC
Confidence            45566677667778877654322111 1    112367999999874 4677888999999999873110     00111


Q ss_pred             EEEEecCCCeEEEEe-----CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccc
Q psy11885        141 VFTMSLCGEKFVVGT-----AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEM  215 (327)
Q Consensus       141 ~~~~~~~~~~~~~~~-----~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  215 (327)
                      .+.....++.+....     .++-|.-|-+-..             .++..+|++++..+++.+.+|..+|+.++.....
T Consensus       259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g-------------~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl  325 (636)
T KOG2394|consen  259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEG-------------SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL  325 (636)
T ss_pred             cccccCCCCeeEEeeeeccccCCccceeEeccc-------------cccceeEcCCCceEEEEecCceEEEeeccHHHHH
Confidence            111112233333221     1233333433211             2345567777777777777777777666654332


Q ss_pred             ccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECC
Q psy11885        216 QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  287 (327)
Q Consensus       216 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp  287 (327)
                      ..++.-|             ....|++|||||++|++|++|--|.||.+..++.+..-++|.+.|..|+|.|
T Consensus       326 g~mkSYF-------------GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  326 GVMKSYF-------------GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHHHhhc-------------cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            2222111             1467999999999999999999999999999999999999999999999997

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.33  E-value=4.6e-09  Score=93.41  Aligned_cols=268  Identities=14%  Similarity=0.098  Sum_probs=142.9

Q ss_pred             EEEEEECCCcEEEEECCCCeEEEEecCCCce-eeEEEe-CCceEEEEecCCcEEEEEcCCCcee-eeecCCccEEEEEEe
Q psy11885         30 FLLASSWDCNVSLYDITNNNLRLKYAHSDPV-LDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYS  106 (327)
Q Consensus        30 ~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v-~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~  106 (327)
                      ++++-..++.|.+.|..+.+..........+ ..+.|+ ++.+++.++.||.|.++|+.+.+.. .+.. ......++++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s   86 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVS   86 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE-
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEc
Confidence            4455566899999999998866555543444 345674 6889999999999999999988753 3333 3346789999


Q ss_pred             CCCCEEEEE-ECCCeEEEEeCCCCceeeeeeCCC--------cEEEE--ecCCCeEEEEeC-CCeEEEEECCCCccceee
Q psy11885        107 DEVNCILTG-SWDTSVKMWDPRSSRCVGNYTQPD--------KVFTM--SLCGEKFVVGTA-GRKVCIWDLRNMGYIMQR  174 (327)
Q Consensus       107 ~~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~-d~~v~iwD~~~~~~~~~~  174 (327)
                      +||++++++ ..++.+.++|.++.+.++.+....        .+.++  ++....+++.-. .+.|-+-|....+.....
T Consensus        87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~  166 (369)
T PF02239_consen   87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT  166 (369)
T ss_dssp             -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred             CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence            999999876 468999999999999888765321        22222  344454555544 477877787654332111


Q ss_pred             ecccceeeeEEeEEeeCCCceEEEe-ecCeEEEEE---------ccCCcccccceee-e----------eeee-------
Q psy11885        175 RESSLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEY---------LDTGPEMQKMKYA-F----------KCHR-------  226 (327)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~---------~~~~~~~~~~~~~-~----------~~h~-------  226 (327)
                      .... .....-..+.|++..++++. ..+.+.+..         .+.+......... +          ..|.       
T Consensus       167 ~i~~-g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~  245 (369)
T PF02239_consen  167 TIKV-GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL  245 (369)
T ss_dssp             EEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred             eecc-cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccc
Confidence            1110 01112234555555544432 222222221         1111100000000 0          0000       


Q ss_pred             -----ec---cCCeeeEEE------eeEEEEecCCCeEEEe----cCCCeEEEEeCCCceeeeecCcC-CcceEEEEECC
Q psy11885        227 -----IK---EDGIEKIYP------VNAISFHQEYNTFATG----GSDGYVNIWDGFNKKRLCQFHRY-DTGITSLCFSY  287 (327)
Q Consensus       227 -----~~---~~~~~~~~~------v~~v~~spd~~~lasg----s~dg~i~iWd~~~~~~~~~~~~~-~~~v~~l~fsp  287 (327)
                           ..   .........      ---+.-||+++++.+.    ...++|.++|..+.+.+..+... ..++..+.|++
T Consensus       246 ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~  325 (369)
T PF02239_consen  246 IGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP  325 (369)
T ss_dssp             EE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T
T ss_pred             ccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC
Confidence                 00   000000001      1236779999999887    44589999999998877776432 23588999999


Q ss_pred             CCCEEEEEEccc
Q psy11885        288 DGNVLAIACSYN  299 (327)
Q Consensus       288 dg~~la~~~~~~  299 (327)
                      ||+++-.+..+.
T Consensus       326 dG~~v~vS~~~~  337 (369)
T PF02239_consen  326 DGKEVWVSVWDG  337 (369)
T ss_dssp             TSSEEEEEEE--
T ss_pred             CCCEEEEEEecC
Confidence            999888776443

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.31  E-value=3.7e-10  Score=91.38  Aligned_cols=146  Identities=14%  Similarity=0.333  Sum_probs=100.6

Q ss_pred             EEEEecCCCcEEEEEEC---------CCcEEEEECC--CCeEEE-EecCCCceeeEEEe-CCceEE--EEecCCcEEEEE
Q psy11885         20 AVKFAPNSNQFLLASSW---------DCNVSLYDIT--NNNLRL-KYAHSDPVLDCCFQ-DAVHSF--SGGLDCTLKMFD   84 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~~---------d~~i~iwd~~--~~~~~~-~~~h~~~v~~~~~~-~~~~~~--sgs~Dg~i~vwd   84 (327)
                      .+.|+|++..+++....         -+...+|-+.  +..... .....++|.+++|+ ++..++  +|..++.|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            57788865444444431         1334555553  222222 22345579999995 566654  566788999999


Q ss_pred             cCCCceeeeecCCccEEEEEEeCCCCEEEEEECC---CeEEEEeCCCCceeeeeeCCC-cEEEEecCCCeEEEEeC----
Q psy11885         85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWD---TSVKMWDPRSSRCVGNYTQPD-KVFTMSLCGEKFVVGTA----  156 (327)
Q Consensus        85 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d---~~i~lwdl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----  156 (327)
                      ++......+  +..+++.+.|+|+|++|+.|+.+   |.|.+||.++.+.+....... ....++|+|..+++++.    
T Consensus        90 ~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~  167 (194)
T PF08662_consen   90 VKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSPRL  167 (194)
T ss_pred             CcccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEeccce
Confidence            973332233  35678899999999999998754   679999999888887776544 34678899999998764    


Q ss_pred             --CCeEEEEECCC
Q psy11885        157 --GRKVCIWDLRN  167 (327)
Q Consensus       157 --d~~v~iwD~~~  167 (327)
                        |+.++||+...
T Consensus       168 ~~dng~~Iw~~~G  180 (194)
T PF08662_consen  168 RVDNGFKIWSFQG  180 (194)
T ss_pred             eccccEEEEEecC
Confidence              77899999853

>KOG4497|consensus

Probab=99.31  E-value=6.3e-10  Score=92.56  Aligned_cols=272  Identities=15%  Similarity=0.197  Sum_probs=162.9

Q ss_pred             EEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCce-EEEEecCCcEEEEEcCCCcee-eeecC
Q psy11885         20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVH-SFSGGLDCTLKMFDFNTQTET-VIGTH   96 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~-~~sgs~Dg~i~vwd~~~~~~~-~~~~h   96 (327)
                      -+.|||+ ++++|+.+ +-.+.|.|.++-++...+.--+.|.-+-|. +..+ +...+.|+.|.+|++....-. -+..-
T Consensus        13 ~c~fSp~-g~yiAs~~-~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPC-GNYIASLS-RYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCC-CCeeeeee-eeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            4789995 57999887 458889999888765544433455556664 4433 446678899999999876543 34555


Q ss_pred             CccEEEEEEeCCCCE-EEEEECCCeEEEEeCCCCceeee--eeCCCcEEEEecCCCeEEEEe------------------
Q psy11885         97 DQPIRAVEYSDEVNC-ILTGSWDTSVKMWDPRSSRCVGN--YTQPDKVFTMSLCGEKFVVGT------------------  155 (327)
Q Consensus        97 ~~~V~~l~~~~~~~~-l~sgs~d~~i~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------------------  155 (327)
                      ..++.+++|+|||+. |.+...|-+|.+|.+.+.++...  -+...+.+++.++|+..+..+                  
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            678999999999965 45677799999999988765322  122234556666665544332                  


Q ss_pred             ------------------CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEE---ccCCcc
Q psy11885        156 ------------------AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEY---LDTGPE  214 (327)
Q Consensus       156 ------------------~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~  214 (327)
                                        .++.+.+||.- .+......+..  .....+++.|.++.+++|+.++..++..   |....+
T Consensus       171 l~~f~~dT~DltgieWsPdg~~laVwd~~-Leykv~aYe~~--lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~e  247 (447)
T KOG4497|consen  171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNV-LEYKVYAYERG--LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGE  247 (447)
T ss_pred             HHhcCCCcccccCceECCCCcEEEEecch-hhheeeeeeec--cceeEEEeccccceEEeeccchhhhhhceeeeeehhh
Confidence                              13345666642 11100011111  1234567788888889999887765521   111000


Q ss_pred             c-----------c---c-----cee-----------------------------eeeeeeec--cCCeeeEEEeeEEEEe
Q psy11885        215 M-----------Q---K-----MKY-----------------------------AFKCHRIK--EDGIEKIYPVNAISFH  244 (327)
Q Consensus       215 ~-----------~---~-----~~~-----------------------------~~~~h~~~--~~~~~~~~~v~~v~~s  244 (327)
                      .           .   +     +..                             ..+.|..+  .+.......+.-++|+
T Consensus       248 flhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs  327 (447)
T KOG4497|consen  248 FLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS  327 (447)
T ss_pred             hccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec
Confidence            0           0   0     000                             00111111  0100111235569999


Q ss_pred             cCCCeEEEecCC--CeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        245 QEYNTFATGGSD--GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       245 pd~~~lasgs~d--g~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      +|..++||--+.  +.+.+||+++.+.-..+. -..+|....|.|..-.|+...+
T Consensus       328 ~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg  381 (447)
T KOG4497|consen  328 CDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTG  381 (447)
T ss_pred             CCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcC
Confidence            999999987543  578999998866433332 2347899999998777776543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.31  E-value=1.9e-09  Score=98.40  Aligned_cols=202  Identities=14%  Similarity=0.097  Sum_probs=127.4

Q ss_pred             CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC---CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEE
Q psy11885         38 CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD---CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL  113 (327)
Q Consensus        38 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D---g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  113 (327)
                      ..|.++|..++.......+...+.+.+|+ ++.+++.++.+   ..|.+||+.++....+..+...+.+++|+||++.|+
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            46888888766655555666678888885 77777765543   479999998876655555666677889999998776


Q ss_pred             -EEECCC--eEEEEeCCCCceeeeeeCC--CcEEEEecCCCeEEEEeC-CC--eEEEEECCCCccceeeecccceeeeEE
Q psy11885        114 -TGSWDT--SVKMWDPRSSRCVGNYTQP--DKVFTMSLCGEKFVVGTA-GR--KVCIWDLRNMGYIMQRRESSLKFQTRC  185 (327)
Q Consensus       114 -sgs~d~--~i~lwdl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-d~--~v~iwD~~~~~~~~~~~~~~~~~~~~~  185 (327)
                       +.+.++  .|.+||+.+++........  .....++++++.++..+. ++  .|.++|+.+.+.             . 
T Consensus       250 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-------------~-  315 (417)
T TIGR02800       250 VSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-------------R-  315 (417)
T ss_pred             EEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-------------E-
Confidence             444444  5888999876543322221  122356667777766543 22  344555432210             0 


Q ss_pred             eEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCC---eEEEE
Q psy11885        186 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG---YVNIW  262 (327)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg---~i~iW  262 (327)
                                         .+  ....                       ......+|+|++++|+.++.++   .|.+|
T Consensus       316 -------------------~l--~~~~-----------------------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~  351 (417)
T TIGR02800       316 -------------------RL--TFRG-----------------------GYNASPSWSPDGDLIAFVHREGGGFNIAVM  351 (417)
T ss_pred             -------------------Ee--ecCC-----------------------CCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence                               00  0000                       0123568999999998887765   78899


Q ss_pred             eCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        263 DGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       263 d~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      |+.++.. ..+... ......+|+|||++|+.++..+
T Consensus       352 d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       352 DLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             eCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            9877543 223221 1234568999999999887643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2111|consensus

Probab=99.31  E-value=6.8e-09  Score=86.06  Aligned_cols=236  Identities=13%  Similarity=0.168  Sum_probs=139.3

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCc--eeeEEEeCCceEEEEecC------CcEEEEEcC
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDP--VLDCCFQDAVHSFSGGLD------CTLKMFDFN   86 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~--v~~~~~~~~~~~~sgs~D------g~i~vwd~~   86 (327)
                      .....++|+.|..  ..+.+.|.-.+||+.+.-+.. ....+...  +..+-|-.+-.++.||.+      ..|.+||=.
T Consensus         6 ~~~lsvs~NQD~S--cFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    6 PKTLSVSFNQDHS--CFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             CceeEEEEccCCc--eEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc
Confidence            4566799998643  444556777899999874321 11112222  222222222233455444      579999944


Q ss_pred             CCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC-ceeeeee---CCCcEEEEecC-CCeEEE--EeCCCe
Q psy11885         87 TQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS-RCVGNYT---QPDKVFTMSLC-GEKFVV--GTAGRK  159 (327)
Q Consensus        87 ~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~-~~~~~~~---~~~~~~~~~~~-~~~~~~--~~~d~~  159 (327)
                      ...+.....-..+|.++.+.++  .|+..- +++|.+|...++ +.+..+.   .|...-++.+. ...+++  |-.-|.
T Consensus        84 k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq  160 (346)
T KOG2111|consen   84 KERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ  160 (346)
T ss_pred             cCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence            4444333445678999999874  455544 588999988743 3444333   34433333333 222332  345689


Q ss_pred             EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      |+|-|+...+.-.......+...+.|++.+-++..+++++..|+.+ +++++....  ...+++.      +.. ...|.
T Consensus       161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLI-RIFdt~~g~--~l~E~RR------G~d-~A~iy  230 (346)
T KOG2111|consen  161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLI-RIFDTEDGT--LLQELRR------GVD-RADIY  230 (346)
T ss_pred             EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEE-EEEEcCCCc--Eeeeeec------CCc-hheEE
Confidence            9999998654310011112333467888888888888888888753 345544322  1122211      111 13589


Q ss_pred             EEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885        240 AISFHQEYNTFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       240 ~v~~spd~~~lasgs~dg~i~iWd~~~  266 (327)
                      +++|||+.++||++|+-||+.|+.++.
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            999999999999999999999998765

>KOG0974|consensus

Probab=99.30  E-value=1.3e-10  Score=109.39  Aligned_cols=189  Identities=15%  Similarity=0.234  Sum_probs=139.1

Q ss_pred             EEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCcee--eEE-E--e-CCceEEEEecCCcEEEEEcCCC-ceee
Q psy11885         20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVL--DCC-F--Q-DAVHSFSGGLDCTLKMFDFNTQ-TETV   92 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~--~~~-~--~-~~~~~~sgs~Dg~i~vwd~~~~-~~~~   92 (327)
                      ...+.- .+..++.+..++.+.+||...+.+.....+...++  +++ +  + +.-++++|+.-+.|.+|+.... .+..
T Consensus        92 g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~  170 (967)
T KOG0974|consen   92 GAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR  170 (967)
T ss_pred             ccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcce
Confidence            334444 34678888899999999998887666655555432  222 2  2 4457889999999999998633 2345


Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceee--eeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCcc
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVG--NYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGY  170 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~  170 (327)
                      +.+|++.|-.+.++.||.+++|.|.|.++|+|++.+++...  -+.+...+..+.+.++.+++++.|-+.++|+..... 
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~~-  249 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGTQ-  249 (967)
T ss_pred             ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEecccce-
Confidence            88999999999999999999999999999999999988655  244566677766666699999999999999653210 


Q ss_pred             ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeE
Q psy11885        171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF  250 (327)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~l  250 (327)
                                                            +.          .+..|..+        .+..++.+++....
T Consensus       250 --------------------------------------l~----------~y~~h~g~--------~iw~~~~~~~~~~~  273 (967)
T KOG0974|consen  250 --------------------------------------LE----------VYDEHSGK--------GIWKIAVPIGVIIK  273 (967)
T ss_pred             --------------------------------------eh----------hhhhhhhc--------ceeEEEEcCCceEE
Confidence                                                  00          11112211        25677888888889


Q ss_pred             EEecCCCeEEEEeCCC
Q psy11885        251 ATGGSDGYVNIWDGFN  266 (327)
Q Consensus       251 asgs~dg~i~iWd~~~  266 (327)
                      +|++.|+.+++|++..
T Consensus       274 vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  274 VTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EeeccCcchhhhhhhc
Confidence            9999999999999654

>KOG3881|consensus

Probab=99.30  E-value=3.5e-10  Score=95.94  Aligned_cols=232  Identities=18%  Similarity=0.164  Sum_probs=150.3

Q ss_pred             CCCeeEEEEecCCCc-EEEEEECCCcEEEEECCCCeEEEE-------ecCCCceeeEEEeCCceEEEEecCCcEEEEEcC
Q psy11885         15 EDGITAVKFAPNSNQ-FLLASSWDCNVSLYDITNNNLRLK-------YAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      ...|+.++|..+++. .+...+.|..+..+..+...+...       ....++|..+...++ .+++|-.+|.+.+|...
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-TLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-EEEEEecCCcEEEEecc
Confidence            357888889875443 444455777888887766553221       123455666665544 56677779999999988


Q ss_pred             CCc-----eeeeecCCccEEEEEEeCC-CCEEEEEECC--CeEEEEeCCCCceeeeeeC-CC-------cE--EE--Eec
Q psy11885         87 TQT-----ETVIGTHDQPIRAVEYSDE-VNCILTGSWD--TSVKMWDPRSSRCVGNYTQ-PD-------KV--FT--MSL  146 (327)
Q Consensus        87 ~~~-----~~~~~~h~~~V~~l~~~~~-~~~l~sgs~d--~~i~lwdl~~~~~~~~~~~-~~-------~~--~~--~~~  146 (327)
                      .+.     ...+..+ .++..+.-++. ...+++|+..  +.+.+||+++.+.+++-.. ++       ++  ..  |..
T Consensus       134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~  212 (412)
T KOG3881|consen  134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE  212 (412)
T ss_pred             CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence            443     2333333 34556665554 3566779999  8899999998765544322 11       11  11  111


Q ss_pred             C--CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee
Q psy11885        147 C--GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC  224 (327)
Q Consensus       147 ~--~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  224 (327)
                      .  ...|++++.-+.||+||.+.+.                                               +....+..
T Consensus       213 g~~~~~fat~T~~hqvR~YDt~~qR-----------------------------------------------RPV~~fd~  245 (412)
T KOG3881|consen  213 GSPNYKFATITRYHQVRLYDTRHQR-----------------------------------------------RPVAQFDF  245 (412)
T ss_pred             CCCCceEEEEecceeEEEecCcccC-----------------------------------------------cceeEecc
Confidence            1  2345555555566666655321                                               11111110


Q ss_pred             eeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee-cCcCCcceEEEEECCCCCEEEEEEccccccC
Q psy11885        225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYDGNVLAIACSYNYELE  303 (327)
Q Consensus       225 h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~-~~~~~~~v~~l~fspdg~~la~~~~~~~~~~  303 (327)
                         .      -.++.+++..|++..+.+|..-+.+..+|++.++.+.. +.+..+.|.+|.-+|.+++||+++-+-+.+.
T Consensus       246 ---~------E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI  316 (412)
T KOG3881|consen  246 ---L------ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI  316 (412)
T ss_pred             ---c------cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence               0      02578899999999999999999999999999988766 7788889999999999999999987655544


Q ss_pred             C
Q psy11885        304 T  304 (327)
Q Consensus       304 ~  304 (327)
                      -
T Consensus       317 h  317 (412)
T KOG3881|consen  317 H  317 (412)
T ss_pred             e
Confidence            4

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.29  E-value=4.8e-08  Score=85.34  Aligned_cols=255  Identities=12%  Similarity=0.030  Sum_probs=141.1

Q ss_pred             CCcEEEEECCCCeEEEEecCCCceeeEEE-eCCceEEEEe----------cCCcEEEEEcCCCcee-eeec----C---C
Q psy11885         37 DCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFSGG----------LDCTLKMFDFNTQTET-VIGT----H---D   97 (327)
Q Consensus        37 d~~i~iwd~~~~~~~~~~~h~~~v~~~~~-~~~~~~~sgs----------~Dg~i~vwd~~~~~~~-~~~~----h---~   97 (327)
                      .++|.+.|..+++......-......+ + +++..++.+.          .+..|.+||..+.+.. .+..    +   .
T Consensus        26 ~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        26 TTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             CceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            389999999999865544322222233 5 4777777554          4789999999987653 2221    1   1


Q ss_pred             ccEEEEEEeCCCCEEEEEE-C-CCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeee
Q psy11885         98 QPIRAVEYSDEVNCILTGS-W-DTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRR  175 (327)
Q Consensus        98 ~~V~~l~~~~~~~~l~sgs-~-d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~  175 (327)
                      ..-..++++|||++++... . ++.|-+.|+.+++.+.++..++....+..+...+.+-+.|++....-+..........
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence            2234788999999999775 3 7999999999999999888766443333333333333445544333222211111000


Q ss_pred             ccc-----ceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeee-eeeeeccCCeeeEEEeeEEEEecCCCe
Q psy11885        176 ESS-----LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF-KCHRIKEDGIEKIYPVNAISFHQEYNT  249 (327)
Q Consensus       176 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~v~~v~~spd~~~  249 (327)
                      ...     .....+. .+.+.+...+-.+.+|.+.+................ .... ..++... ....-++++|+++.
T Consensus       185 ~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~-~~~~wrP-~g~q~ia~~~dg~~  261 (352)
T TIGR02658       185 TEVFHPEDEYLINHP-AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAE-KADGWRP-GGWQQVAYHRARDR  261 (352)
T ss_pred             eeeecCCccccccCC-ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccc-cccccCC-CcceeEEEcCCCCE
Confidence            000     0000011 223322233333344555543321111111111110 0000 0000000 01123899999998


Q ss_pred             EEEec----------CCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCC-EEEEEE
Q psy11885        250 FATGG----------SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGN-VLAIAC  296 (327)
Q Consensus       250 lasgs----------~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~-~la~~~  296 (327)
                      +.+..          ..+.|.++|..+++.+..+.. ...++.|+|||||+ +|.+..
T Consensus       262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeC
Confidence            88742          225899999999999888764 34789999999999 666665

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2139|consensus

Probab=99.27  E-value=2.8e-09  Score=89.76  Aligned_cols=147  Identities=14%  Similarity=0.244  Sum_probs=102.1

Q ss_pred             eeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC----eE-E---------EEecCCCceeeEEEe-CCceE
Q psy11885          7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN----NL-R---------LKYAHSDPVLDCCFQ-DAVHS   71 (327)
Q Consensus         7 ~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~----~~-~---------~~~~h~~~v~~~~~~-~~~~~   71 (327)
                      ...+.+.-...|+|++|-|.+..-|+.|. -+-|.+|.....    .. .         ....-..+|.++.|. ++..+
T Consensus       132 pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l  210 (445)
T KOG2139|consen  132 PTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTIL  210 (445)
T ss_pred             CceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEE
Confidence            44555666789999999998777677666 455899986421    11 0         111112578999995 78888


Q ss_pred             EEEec-CCcEEEEEcCCCceeeee-cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC-ceeeeeeCCCc--EEEEec
Q psy11885         72 FSGGL-DCTLKMFDFNTQTETVIG-THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS-RCVGNYTQPDK--VFTMSL  146 (327)
Q Consensus        72 ~sgs~-Dg~i~vwd~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~-~~~~~~~~~~~--~~~~~~  146 (327)
                      ++++. |..|++||.+++....+. .-.+.+.-|.||||+.+|+.++-|+.-++|..... .+..-....+.  ..++++
T Consensus       211 ~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp  290 (445)
T KOG2139|consen  211 VTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP  290 (445)
T ss_pred             eecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC
Confidence            87765 578999999988765443 33466889999999999999999999999976442 22222223333  356788


Q ss_pred             CCCeEEEE
Q psy11885        147 CGEKFVVG  154 (327)
Q Consensus       147 ~~~~~~~~  154 (327)
                      +|..++..
T Consensus       291 cGsfLLf~  298 (445)
T KOG2139|consen  291 CGSFLLFA  298 (445)
T ss_pred             CCCEEEEE
Confidence            88876554

>KOG2394|consensus

Probab=99.25  E-value=2.1e-10  Score=100.91  Aligned_cols=119  Identities=24%  Similarity=0.350  Sum_probs=89.1

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCC--------------C-eE--EE-----------Eec-CCCceeeEEE-
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITN--------------N-NL--RL-----------KYA-HSDPVLDCCF-   65 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~--------------~-~~--~~-----------~~~-h~~~v~~~~~-   65 (327)
                      ..|+|++|-|.+...++++-.+|.+++||.+-              + +.  ..           .+. -++.|+..+| 
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            68999999997666667777899999997531              1 10  00           011 1345667777 


Q ss_pred             eCCceEEEEecCCcEEEEEcCCCceee-eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee
Q psy11885         66 QDAVHSFSGGLDCTLKMFDFNTQTETV-IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN  134 (327)
Q Consensus        66 ~~~~~~~sgs~Dg~i~vwd~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~  134 (327)
                      +++.+|++.|.||.+||||+.+....- ...-=+...|++|+|||++|++|++|.-|.+|.+..++.+..
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR  369 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR  369 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence            489999999999999999998764321 111124578999999999999999999999999988887654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.22  E-value=3.2e-07  Score=81.42  Aligned_cols=266  Identities=11%  Similarity=0.097  Sum_probs=154.0

Q ss_pred             EEEEECC----CcEEEEEC--CCCeEEEEe--cCCCceeeEEE-eCCceEEEEec----CCcEEEEEcCCC--ceeee--
Q psy11885         31 LLASSWD----CNVSLYDI--TNNNLRLKY--AHSDPVLDCCF-QDAVHSFSGGL----DCTLKMFDFNTQ--TETVI--   93 (327)
Q Consensus        31 l~s~~~d----~~i~iwd~--~~~~~~~~~--~h~~~v~~~~~-~~~~~~~sgs~----Dg~i~vwd~~~~--~~~~~--   93 (327)
                      +++|+..    +.|.+|++  +++++....  .-......+++ +++..+++...    ++.|..|+++..  ....+  
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4566666    68888888  556653322  23344566777 47778887766    578999988764  33222  


Q ss_pred             -ecCCccEEEEEEeCCCCEEEEEEC-CCeEEEEeCCC-Cceee---eee-------------CCCcEEEEecCCCeEEEE
Q psy11885         94 -GTHDQPIRAVEYSDEVNCILTGSW-DTSVKMWDPRS-SRCVG---NYT-------------QPDKVFTMSLCGEKFVVG  154 (327)
Q Consensus        94 -~~h~~~V~~l~~~~~~~~l~sgs~-d~~i~lwdl~~-~~~~~---~~~-------------~~~~~~~~~~~~~~~~~~  154 (327)
                       .........+++++++++|+++.+ ++.|.++++.. ++...   .+.             .+.....++++++.+++.
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence             212334567899999999998875 89999999986 33221   111             011245677888887765


Q ss_pred             e-CCCeEEEEECCCCcc-cee--eecccceeeeEEeEEeeCCCce-EEEeecCeEEEEEccCCcccccceeeeeeeeecc
Q psy11885        155 T-AGRKVCIWDLRNMGY-IMQ--RRESSLKFQTRCIKCFPNKQGY-VLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE  229 (327)
Q Consensus       155 ~-~d~~v~iwD~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~  229 (327)
                      . ....|.+|++..... +..  .........++.+.++|+++.+ ++...++.+.+..++.............  ....
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~--~~~~  239 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS--TLPE  239 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE--SCET
T ss_pred             ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee--eccc
Confidence            4 345899999876441 111  0111122346888999987655 4445566666665552221111111111  0000


Q ss_pred             CCeeeEEEeeEEEEecCCCeEEEec-CCCeEEEEeCC--Cc--eeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        230 DGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIWDGF--NK--KRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       230 ~~~~~~~~v~~v~~spd~~~lasgs-~dg~i~iWd~~--~~--~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                       +.........|+++|||++|.++. ..++|-+|++.  ++  +.+..+......-+.++|+|||++|++++...
T Consensus       240 -~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  240 -GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS  313 (345)
T ss_dssp             -TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred             -cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence             000001256799999999887654 46789999983  23  23333332223358999999999999997543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.21  E-value=7.5e-09  Score=94.43  Aligned_cols=152  Identities=14%  Similarity=0.080  Sum_probs=99.4

Q ss_pred             CCCeeEEEEecCCCcEEEEEECC---CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCC--cEEEEEcCC
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWD---CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDC--TLKMFDFNT   87 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg--~i~vwd~~~   87 (327)
                      ...+...+|+|++ ++|+.++.+   ..|++||+.+++......+...+.+++|+ ++..++ +.+.++  .|.+||+.+
T Consensus       189 ~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~  267 (417)
T TIGR02800       189 REPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG  267 (417)
T ss_pred             CCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence            3457888999965 566665543   47999999988765555555566677885 666665 555444  588889887


Q ss_pred             CceeeeecCCccEEEEEEeCCCCEEEEEECC-C--eEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEEEEeCCC---e
Q psy11885         88 QTETVIGTHDQPIRAVEYSDEVNCILTGSWD-T--SVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVGTAGR---K  159 (327)
Q Consensus        88 ~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d-~--~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~---~  159 (327)
                      +....+..+........|+++++.|+..+.. +  .|.++|+.+++.........  ....++++++.++..+.++   .
T Consensus       268 ~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~  347 (417)
T TIGR02800       268 KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFN  347 (417)
T ss_pred             CCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence            7665555555555567899999988766543 3  57778887765432211211  2345667777777766554   5


Q ss_pred             EEEEECCC
Q psy11885        160 VCIWDLRN  167 (327)
Q Consensus       160 v~iwD~~~  167 (327)
                      |.+||+.+
T Consensus       348 i~~~d~~~  355 (417)
T TIGR02800       348 IAVMDLDG  355 (417)
T ss_pred             EEEEeCCC
Confidence            66666653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547|consensus

Probab=99.21  E-value=3.7e-09  Score=94.22  Aligned_cols=172  Identities=15%  Similarity=0.214  Sum_probs=117.0

Q ss_pred             CCcEEEEEECCCcEEEEECCCCeEEEEecC----CCceeeEEEe---C------------------CceEEEEecCCcEE
Q psy11885         27 SNQFLLASSWDCNVSLYDITNNNLRLKYAH----SDPVLDCCFQ---D------------------AVHSFSGGLDCTLK   81 (327)
Q Consensus        27 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h----~~~v~~~~~~---~------------------~~~~~sgs~Dg~i~   81 (327)
                      ...++|....||.++|||...+++..-+..    .+...+..|.   +                  ...++-|-..|.|-
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            457889899999999999999987654431    2334444441   1                  11333455566777


Q ss_pred             EEEcCCCceee---eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCC
Q psy11885         82 MFDFNTQTETV---IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGR  158 (327)
Q Consensus        82 vwd~~~~~~~~---~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  158 (327)
                      ++++..++...   ...|.+.|.++.++.+-..|.|++.|+.+..|+....+                            
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~----------------------------  135 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV----------------------------  135 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce----------------------------
Confidence            77766665432   24577777777776666677777777777777654321                            


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      .+|+|...+                                              .                      .+
T Consensus       136 ~~~~~~~~~----------------------------------------------~----------------------~~  147 (541)
T KOG4547|consen  136 IIRIWKEQK----------------------------------------------P----------------------LV  147 (541)
T ss_pred             eeeeeccCC----------------------------------------------C----------------------cc
Confidence            133332110                                              0                      13


Q ss_pred             eEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCC-----CCEEEEEE
Q psy11885        239 NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD-----GNVLAIAC  296 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspd-----g~~la~~~  296 (327)
                      .+++.+||+.+|++||  +.|++||+++++.+.+|.+|.++|.+++|--+     |.++.++.
T Consensus       148 ~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa  208 (541)
T KOG4547|consen  148 SSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA  208 (541)
T ss_pred             ceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecc
Confidence            4678889999999986  67999999999999999999999999999888     77776653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=1e-08  Score=94.00  Aligned_cols=140  Identities=11%  Similarity=0.041  Sum_probs=87.3

Q ss_pred             CCeeEEEEecCCCcEEEEEE-CCC--cEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCc--EEEEEcCCC
Q psy11885         16 DGITAVKFAPNSNQFLLASS-WDC--NVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCT--LKMFDFNTQ   88 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~--i~vwd~~~~   88 (327)
                      ..+...+|+|++ +.|+..+ .++  .|.+||+.+++..............+|+ ++..++ +.+.++.  |.++|++++
T Consensus       218 ~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg  296 (448)
T PRK04792        218 EPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK  296 (448)
T ss_pred             CcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence            466789999975 4555443 333  5888999887754433333334466785 777665 5566775  666788777


Q ss_pred             ceeeeecCCccEEEEEEeCCCCEEEEEEC-CC--eEEEEeCCCCceeee-eeCC-CcEEEEecCCCeEEEEeC
Q psy11885         89 TETVIGTHDQPIRAVEYSDEVNCILTGSW-DT--SVKMWDPRSSRCVGN-YTQP-DKVFTMSLCGEKFVVGTA  156 (327)
Q Consensus        89 ~~~~~~~h~~~V~~l~~~~~~~~l~sgs~-d~--~i~lwdl~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~  156 (327)
                      ....+..+........|+|||+.++..+. ++  .|.++|+.+++.... +... .....++++|+.++..+.
T Consensus       297 ~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        297 ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence            66555555555677899999998876553 34  466667777664322 1111 112356777777766543

>KOG1272|consensus

Probab=99.20  E-value=3.8e-11  Score=103.78  Aligned_cols=148  Identities=19%  Similarity=0.256  Sum_probs=115.4

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEeC-CceEEEEecCCcEEEEEcCCCcee-e
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQD-AVHSFSGGLDCTLKMFDFNTQTET-V   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~~-~~~~~sgs~Dg~i~vwd~~~~~~~-~   92 (327)
                      .+|+.+.|-|. .-+|++++..|-++.-|+..|++...+ ...+.+..++-.+ +..+-.|...|+|-+|.-++..+. -
T Consensus       210 ~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK  288 (545)
T KOG1272|consen  210 IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK  288 (545)
T ss_pred             Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence            57889999994 456777888899999999999864332 3344555555433 344558899999999987766553 3


Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEE
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      +..|.++|.+|++.++|++.+|.+.|..++|||++.-..+.++..+.....++++...+++.+....|.||-
T Consensus       289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWK  360 (545)
T ss_pred             HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeeh
Confidence            568999999999999999999999999999999998776666655555556666777788888889999993

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=1.2e-08  Score=93.36  Aligned_cols=153  Identities=10%  Similarity=0.057  Sum_probs=96.2

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECC---CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCC--cEEEEEcC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWD---CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDC--TLKMFDFN   86 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg--~i~vwd~~   86 (327)
                      +...+...+|+|++ +.|+..+.+   ..|.+||+.+++........+.+...+|+ ++..++ +.+.++  .|.+||+.
T Consensus       197 ~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~  275 (430)
T PRK00178        197 SREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA  275 (430)
T ss_pred             CCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence            34568899999975 555554433   36899999988765444444445567885 677665 555555  57778988


Q ss_pred             CCceeeeecCCccEEEEEEeCCCCEEEEEEC-CC--eEEEEeCCCCceeeeee-CC-CcEEEEecCCCeEEEEeCC-C--
Q psy11885         87 TQTETVIGTHDQPIRAVEYSDEVNCILTGSW-DT--SVKMWDPRSSRCVGNYT-QP-DKVFTMSLCGEKFVVGTAG-R--  158 (327)
Q Consensus        87 ~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~-d~--~i~lwdl~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~d-~--  158 (327)
                      ++....+..+........|+|||+.++..+. ++  .|.++|+.+++...... .. .....++++++.++....+ +  
T Consensus       276 ~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~  355 (430)
T PRK00178        276 SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNF  355 (430)
T ss_pred             CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCce
Confidence            8766555555555667889999998776554 33  57777887776432211 11 1223567777777665432 2  


Q ss_pred             eEEEEECCC
Q psy11885        159 KVCIWDLRN  167 (327)
Q Consensus       159 ~v~iwD~~~  167 (327)
                      .|.+||+.+
T Consensus       356 ~l~~~dl~t  364 (430)
T PRK00178        356 HVAAQDLQR  364 (430)
T ss_pred             EEEEEECCC
Confidence            355666553

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=3.9e-08  Score=90.13  Aligned_cols=200  Identities=14%  Similarity=0.052  Sum_probs=122.6

Q ss_pred             cEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC---CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEE-
Q psy11885         39 NVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD---CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL-  113 (327)
Q Consensus        39 ~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D---g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-  113 (327)
                      .|.++|..++.......+...+....|+ ++.+++..+.+   ..|.+||+.++....+....+.+....|+|||+.|+ 
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence            4778888776665556677788888995 78888765543   358889998876655444444556789999999876 


Q ss_pred             EEECCC--eEEEEeCCCCceeeeeeCC--CcEEEEecCCCeEEEEeC-CC--eEEEEECCCCccceeeecccceeeeEEe
Q psy11885        114 TGSWDT--SVKMWDPRSSRCVGNYTQP--DKVFTMSLCGEKFVVGTA-GR--KVCIWDLRNMGYIMQRRESSLKFQTRCI  186 (327)
Q Consensus       114 sgs~d~--~i~lwdl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-d~--~v~iwD~~~~~~~~~~~~~~~~~~~~~~  186 (327)
                      +.+.++  .|.+||+.+++........  .....++++++.++..+. ++  .|.++|+.+++.             .. 
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-------------~~-  325 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-------------ER-  325 (430)
T ss_pred             EEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-------------EE-
Confidence            455555  6888899887643322221  223456777777766543 22  344455433210             00 


Q ss_pred             EEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC-CC--eEEEEe
Q psy11885        187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DG--YVNIWD  263 (327)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~-dg--~i~iWd  263 (327)
                                         +. .. ..                       .....+|+||++.|+..+. ++  .|.+||
T Consensus       326 -------------------lt-~~-~~-----------------------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~d  361 (430)
T PRK00178        326 -------------------VT-FV-GN-----------------------YNARPRLSADGKTLVMVHRQDGNFHVAAQD  361 (430)
T ss_pred             -------------------ee-cC-CC-----------------------CccceEECCCCCEEEEEEccCCceEEEEEE
Confidence                               00 00 00                       0113578999999876554 33  588889


Q ss_pred             CCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        264 GFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       264 ~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      +.+++. ..+.. ........|||||++|+.++..
T Consensus       362 l~tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        362 LQRGSV-RILTD-TSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             CCCCCE-EEccC-CCCCCCceECCCCCEEEEEEec
Confidence            887654 22321 1122356899999999988653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.09  E-value=1.7e-07  Score=84.30  Aligned_cols=244  Identities=14%  Similarity=0.083  Sum_probs=133.1

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecCCccEE------E
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIR------A  102 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~------~  102 (327)
                      ..+++++.++.+.-+|..+|++.-.......+.+.-...+..++.++.++.+..||.++++.........+..      +
T Consensus       106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s  185 (377)
T TIGR03300       106 GLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSAS  185 (377)
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCC
Confidence            3566677788888888888776543333333322111234567777778999999988776543221111111      1


Q ss_pred             EEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-----------E-EEEecCCCeEEEEeCCCeEEEEECCCCcc
Q psy11885        103 VEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-----------V-FTMSLCGEKFVVGTAGRKVCIWDLRNMGY  170 (327)
Q Consensus       103 l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~d~~v~iwD~~~~~~  170 (327)
                      ....  +..++.+..++.+..+|+++++.++.......           + ......++.+++++.++.+..||.++++.
T Consensus       186 p~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~  263 (377)
T TIGR03300       186 PVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV  263 (377)
T ss_pred             CEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE
Confidence            1111  24678888899999999999987765432100           0 01112356788888999999999988764


Q ss_pred             ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeE
Q psy11885        171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF  250 (327)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~l  250 (327)
                      .........    .  .....++.+.+++.++.........+..    .+...  ...  . .   ...+...  .+..|
T Consensus       264 ~W~~~~~~~----~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~----~W~~~--~~~--~-~---~~ssp~i--~g~~l  323 (377)
T TIGR03300       264 LWKRDASSY----Q--GPAVDDNRLYVTDADGVVVALDRRSGSE----LWKND--ELK--Y-R---QLTAPAV--VGGYL  323 (377)
T ss_pred             EEeeccCCc----c--CceEeCCEEEEECCCCeEEEEECCCCcE----EEccc--ccc--C-C---ccccCEE--ECCEE
Confidence            322211000    0  0111233444555555544433333221    11110  000  0 0   0111111  35688


Q ss_pred             EEecCCCeEEEEeCCCceeeeecCcCCcceEE-EEECCCCCEEEEEE
Q psy11885        251 ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS-LCFSYDGNVLAIAC  296 (327)
Q Consensus       251 asgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~-l~fspdg~~la~~~  296 (327)
                      ++++.+|.++++|..+++.+.++..+..++.. .++. +++ |..++
T Consensus       324 ~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~-l~v~~  368 (377)
T TIGR03300       324 VVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDG-LLVQT  368 (377)
T ss_pred             EEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCE-EEEEe
Confidence            89999999999999999988877655443332 2333 344 44454

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0974|consensus

Probab=99.07  E-value=7.6e-10  Score=104.34  Aligned_cols=116  Identities=23%  Similarity=0.416  Sum_probs=100.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-E-EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-R-LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~-~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      .-|++.|..+.|+.+ +.++++.|.|.++|+|++++.+. . ..++|+..|..++|.+. .++|++.|-+.++|+.+...
T Consensus       172 ~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~  249 (967)
T KOG0974|consen  172 KGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQ  249 (967)
T ss_pred             cccCCceEEEEEccC-CcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecccce
Confidence            458899999999985 68999999999999999999874 3 56789999999999766 99999999999999877665


Q ss_pred             eeeeecCC-ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC
Q psy11885         90 ETVIGTHD-QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS  129 (327)
Q Consensus        90 ~~~~~~h~-~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~  129 (327)
                      ...+..|. .-|..++..++.-.++|++.|+++++||+...
T Consensus       250 l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  250 LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            55666664 46899999998889999999999999998654

>KOG1064|consensus

Probab=99.03  E-value=2.6e-09  Score=105.89  Aligned_cols=153  Identities=16%  Similarity=0.267  Sum_probs=111.7

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      +-.+|.++.=+|. ..+.++|+.||.|++|....++....+  .-+..|..+.|+ .|+....+..||.+.+|.+.....
T Consensus      2207 ~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY 2285 (2439)
T ss_pred             ccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcce
Confidence            3457888888884 578999999999999999887744433  233668888884 777777788899999999874433


Q ss_pred             eeeecCCccEEEEEEeCCCCEEEEEE---CCCeEEEEeCCC---Cceeeeee-CCCcEEEEecCCCeEEEEeCCCeEEEE
Q psy11885         91 TVIGTHDQPIRAVEYSDEVNCILTGS---WDTSVKMWDPRS---SRCVGNYT-QPDKVFTMSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        91 ~~~~~h~~~V~~l~~~~~~~~l~sgs---~d~~i~lwdl~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iw  163 (327)
                      ..-+.|+....++.|-.  ..+++++   .++.+.+||.--   ..++.+.. +...+..+.|..+.+++|+.+|.|++|
T Consensus      2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLF 2363 (2439)
T ss_pred             eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEe
Confidence            34457887777887765  4566653   467899999642   22444322 233456677777889999999999999


Q ss_pred             ECCCCc
Q psy11885        164 DLRNMG  169 (327)
Q Consensus       164 D~~~~~  169 (327)
                      |+|+.+
T Consensus      2364 D~rqrq 2369 (2439)
T KOG1064|consen 2364 DIRQRQ 2369 (2439)
T ss_pred             ehHHHH
Confidence            998644

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.03  E-value=2e-07  Score=83.07  Aligned_cols=190  Identities=13%  Similarity=0.123  Sum_probs=114.0

Q ss_pred             EEecCCcEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc--EEEEecCCC
Q psy11885         73 SGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK--VFTMSLCGE  149 (327)
Q Consensus        73 sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~--~~~~~~~~~  149 (327)
                      +-..++.|.+.|..+.+.. .+......-..+.+++||+++++++.|+.|.++|+.+++.+.++.....  .++++++|+
T Consensus        11 ~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~   90 (369)
T PF02239_consen   11 VERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGK   90 (369)
T ss_dssp             EEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTT
T ss_pred             EecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCC
Confidence            4556899999999887643 4444333334578999999999999999999999999999988876544  356677888


Q ss_pred             eEEEE-eCCCeEEEEECCCCccceeeeccccee-----eeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeee
Q psy11885        150 KFVVG-TAGRKVCIWDLRNMGYIMQRRESSLKF-----QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFK  223 (327)
Q Consensus       150 ~~~~~-~~d~~v~iwD~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  223 (327)
                      +++++ ...+.+.++|.++.+.+..........     -...+...+..+.++++..+ ...++..+...........+.
T Consensus        91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-~~~I~vVdy~d~~~~~~~~i~  169 (369)
T PF02239_consen   91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-TGEIWVVDYSDPKNLKVTTIK  169 (369)
T ss_dssp             EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-TTEEEEEETTTSSCEEEEEEE
T ss_pred             EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-CCeEEEEEeccccccceeeec
Confidence            87765 578999999999887654433322211     11234444555555555443 223444443322111111111


Q ss_pred             eeeeccCCeeeEEEeeEEEEecCCCeEEEe-cCCCeEEEEeCCCceeeeec
Q psy11885        224 CHRIKEDGIEKIYPVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       224 ~h~~~~~~~~~~~~v~~v~~spd~~~lasg-s~dg~i~iWd~~~~~~~~~~  273 (327)
                      .     ..     ......|+|++++|+++ -.+..|-++|..+++.+..+
T Consensus       170 ~-----g~-----~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  170 V-----GR-----FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI  210 (369)
T ss_dssp             -------T-----TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             c-----cc-----cccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence            0     00     13457899999998765 44678999999888766543

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=6.8e-08  Score=88.66  Aligned_cols=204  Identities=10%  Similarity=0.102  Sum_probs=119.4

Q ss_pred             cEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECC---CeEEEEeCCCCceee--eeeCCCcEEEEecCCCeEEE
Q psy11885         79 TLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWD---TSVKMWDPRSSRCVG--NYTQPDKVFTMSLCGEKFVV  153 (327)
Q Consensus        79 ~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d---~~i~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~~~~  153 (327)
                      .+.++|.+......+..+...+....|+|||+.|+..+.+   ..|.+||+.+++...  .+........++++|+.++.
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~  278 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL  278 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence            5666787766555555667788999999999988876543   258889998876432  22222334578888888765


Q ss_pred             -EeCCC--eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeeeeecc
Q psy11885        154 -GTAGR--KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKE  229 (327)
Q Consensus       154 -~~~d~--~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h~~~~  229 (327)
                       ...++  .|.++|+.+.+.. ...  ..........++|+++.++..+. ++...++.++....... ...+..     
T Consensus       279 ~~~~~g~~~Iy~~dl~tg~~~-~lt--~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g-----  349 (448)
T PRK04792        279 VLSKDGQPEIYVVDIATKALT-RIT--RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEG-----  349 (448)
T ss_pred             EEeCCCCeEEEEEECCCCCeE-ECc--cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCC-----
Confidence             45555  4777888765421 111  11111233457787776665543 34455655554321100 000000     


Q ss_pred             CCeeeEEEeeEEEEecCCCeEEEecC-CC--eEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        230 DGIEKIYPVNAISFHQEYNTFATGGS-DG--YVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       230 ~~~~~~~~v~~v~~spd~~~lasgs~-dg--~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                            ......+|+|||++|+..+. ++  .|.++|+.+++. ..+... ......+|+|||++|+.++..+
T Consensus       350 ------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~  414 (448)
T PRK04792        350 ------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQ  414 (448)
T ss_pred             ------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCC-CCCCCceECCCCCEEEEEEecC
Confidence                  01224689999999876554 34  455567777653 223221 1123458999999999887543

>KOG1064|consensus

Probab=99.00  E-value=9.6e-10  Score=108.79  Aligned_cols=156  Identities=17%  Similarity=0.255  Sum_probs=120.0

Q ss_pred             ceeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEE---ecCCcEEE
Q psy11885          6 TEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSG---GLDCTLKM   82 (327)
Q Consensus         6 ~~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sg---s~Dg~i~v   82 (327)
                      ++..+.......|+.++|+-+|++ ...+..||.+.+|............|.+.....+|-. ..++++   +.++.+.+
T Consensus      2242 ~v~~~rt~g~s~vtr~~f~~qGnk-~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~l 2319 (2439)
T KOG1064|consen 2242 QVVCFRTAGNSRVTRSRFNHQGNK-FGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCL 2319 (2439)
T ss_pred             eEEEeeccCcchhhhhhhcccCCc-eeeeccCCceeecccCCcceeccccCCccccceeeee-hhhhccccCCCCCcccc
Confidence            344555556689999999997765 4556679999999998544444446888888888753 444543   44688999


Q ss_pred             EEcCCCce--eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeE
Q psy11885         83 FDFNTQTE--TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        83 wd~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  160 (327)
                      ||..-...  .+...|.+.+++++|.|..+.|+||+.+|.|++||++.++..+.++.-      . ..+.|++++..|.+
T Consensus      2320 wDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~------~-~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2320 WDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL------D-TREYFVTGSSEGNI 2392 (2439)
T ss_pred             hhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh------h-hhheeeccCcccce
Confidence            99764432  334679999999999999999999999999999999998887776652      2 35679999999999


Q ss_pred             EEEECCCCcc
Q psy11885        161 CIWDLRNMGY  170 (327)
Q Consensus       161 ~iwD~~~~~~  170 (327)
                      +||++.+...
T Consensus      2393 kIw~~s~~~l 2402 (2439)
T KOG1064|consen 2393 KIWRLSEFGL 2402 (2439)
T ss_pred             EEEEccccch
Confidence            9999987643

>KOG4532|consensus

Probab=98.99  E-value=1.2e-07  Score=77.09  Aligned_cols=226  Identities=16%  Similarity=0.100  Sum_probs=139.5

Q ss_pred             eEEEEecC----CCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEE-Ee-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         19 TAVKFAPN----SNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCC-FQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        19 ~~i~fs~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~-~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      +.+.|.|.    ...+||.||.-|...+|...+.+.....  .|...|.-.. +. ....++-++.|.++++.+++.+..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            56788873    1357999999999999999877743322  2333222111 11 123456678899999998875433


Q ss_pred             eeeecCCc--cEEEEEEeCCCCEEEEEECCCeEEEEeCCC-Cceeee-eeC----CCcEEEEecCCCeEEEEeCCCeEEE
Q psy11885         91 TVIGTHDQ--PIRAVEYSDEVNCILTGSWDTSVKMWDPRS-SRCVGN-YTQ----PDKVFTMSLCGEKFVVGTAGRKVCI  162 (327)
Q Consensus        91 ~~~~~h~~--~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~d~~v~i  162 (327)
                      .. ..|..  .+.++.+++|+++.++.+....|..|.+.. ++.+-. ...    ++...+++.....+|+++.||++.|
T Consensus       151 ~~-~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I  229 (344)
T KOG4532|consen  151 KF-AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI  229 (344)
T ss_pred             cc-eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence            21 12333  378899999999999999999999998754 333222 222    2334455555678999999999999


Q ss_pred             EECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        163 WDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       163 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                      ||+|.++..+.......+                                            |        |...+..+.
T Consensus       230 ~DVR~~~tpm~~~sstrp--------------------------------------------~--------hnGa~R~c~  257 (344)
T KOG4532|consen  230 YDVRNMATPMAEISSTRP--------------------------------------------H--------HNGAFRVCR  257 (344)
T ss_pred             EEecccccchhhhcccCC--------------------------------------------C--------CCCceEEEE
Confidence            999987643321111100                                            0        011345566


Q ss_pred             EecCCC--eEEEecCCCeEEEEeCCCceeeeec-------CcCCc-ceEEEEECCCCCEEEEEEc
Q psy11885        243 FHQEYN--TFATGGSDGYVNIWDGFNKKRLCQF-------HRYDT-GITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       243 ~spd~~--~lasgs~dg~i~iWd~~~~~~~~~~-------~~~~~-~v~~l~fspdg~~la~~~~  297 (327)
                      |+|.|.  +|.-.-.=+.+.+-|+++++..+.+       ..|.. .|..-.|+.++..+-++..
T Consensus       258 Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  258 FSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             ecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence            666442  2332223366788888887654433       22322 3777888888877766654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=2.3e-07  Score=84.52  Aligned_cols=208  Identities=10%  Similarity=-0.014  Sum_probs=117.0

Q ss_pred             CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCE--E-EEEECCC--eEEEEeCCCCceee--eeeCCCcEEEEecCCCe
Q psy11885         78 CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNC--I-LTGSWDT--SVKMWDPRSSRCVG--NYTQPDKVFTMSLCGEK  150 (327)
Q Consensus        78 g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~--l-~sgs~d~--~i~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~  150 (327)
                      ..|.+.|.+......+......+.+-.|+|||+.  + ++...++  .|.+.++.+++...  .+........++++|+.
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            3566677766655545444556677799999975  2 2444443  56777887765432  23333344578889988


Q ss_pred             EEEEeC-CC----eEEEEECCCCc--cceeeecccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeee
Q psy11885        151 FVVGTA-GR----KVCIWDLRNMG--YIMQRRESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAF  222 (327)
Q Consensus       151 ~~~~~~-d~----~v~iwD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~  222 (327)
                      ++..+. ++    .+.+||+....  ...+...... .......++|+++.++..+. ++...++.++....... ...+
T Consensus       245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~-~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~-~~~l  322 (428)
T PRK01029        245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF-GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS-PRLL  322 (428)
T ss_pred             EEEEECCCCCcceeEEEeecccCCCCcceEeecCCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc-eEEe
Confidence            876553 22    34557776421  1111111110 01123467888877665543 44445555433211000 0001


Q ss_pred             eeeeeccCCeeeEEEeeEEEEecCCCeEEEecCC---CeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        223 KCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD---GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       223 ~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~d---g~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      ..+     .    ..+...+|||||+.|+..+.+   ..|++||+.+++.. .+......+....|||||++|+....
T Consensus       323 t~~-----~----~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        323 TKK-----Y----RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             ccC-----C----CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEEC
Confidence            100     0    124567899999998865443   36999999877643 33322334677899999999987654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.99  E-value=1.9e-06  Score=86.70  Aligned_cols=247  Identities=10%  Similarity=0.074  Sum_probs=140.8

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-CC-------------CceeeEEEe-CCceEEEEe-cCCcEEE
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HS-------------DPVLDCCFQ-DAVHSFSGG-LDCTLKM   82 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~-------------~~v~~~~~~-~~~~~~sgs-~Dg~i~v   82 (327)
                      ..+++++.++.++++-...+.|+++|..+......-. ..             .....+++. +++.++.+. ..+.|++
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            3688887656677777778899999986554332221 00             123566774 556565544 4578999


Q ss_pred             EEcCCCceeeeecC-----------------CccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeeeC-------
Q psy11885         83 FDFNTQTETVIGTH-----------------DQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-------  137 (327)
Q Consensus        83 wd~~~~~~~~~~~h-----------------~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-------  137 (327)
                      +|+.++....+.+-                 -..-..+++++ ++..+++.+.++.|++||..++.... +..       
T Consensus       651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~  729 (1057)
T PLN02919        651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNL  729 (1057)
T ss_pred             EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccC
Confidence            99877654333110                 01235789998 45566677788999999987764321 100       


Q ss_pred             -----------CCcEEEEecCCCeEEE-EeCCCeEEEEECCCCccceeeec-----c--------------cceeeeEEe
Q psy11885        138 -----------PDKVFTMSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRRE-----S--------------SLKFQTRCI  186 (327)
Q Consensus       138 -----------~~~~~~~~~~~~~~~~-~~~d~~v~iwD~~~~~~~~~~~~-----~--------------~~~~~~~~~  186 (327)
                                 ...-++++++++.+++ -+.++.|++||+++.........     .              ..-..+..+
T Consensus       730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv  809 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV  809 (1057)
T ss_pred             CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence                       0112456677775554 45678999999986542110000     0              000123456


Q ss_pred             EEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCC---eeeEEEeeEEEEecCCCeEEEecCCCeEEEEe
Q psy11885        187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDG---IEKIYPVNAISFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~---~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd  263 (327)
                      ++.+++..+++-..++.+.++..+.+...   ...-.+.....++   .........++++++|+.+++-+.++.|++||
T Consensus       810 avd~dG~LYVADs~N~rIrviD~~tg~v~---tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        810 LCAKDGQIYVADSYNHKIKKLDPATKRVT---TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eEeCCCcEEEEECCCCEEEEEECCCCeEE---EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            66666665555555555555433322110   0000000000000   01122466899999999999988999999999


Q ss_pred             CCCcee
Q psy11885        264 GFNKKR  269 (327)
Q Consensus       264 ~~~~~~  269 (327)
                      +.+++.
T Consensus       887 ~~~~~~  892 (1057)
T PLN02919        887 LNKGEA  892 (1057)
T ss_pred             CCCCcc
Confidence            988754

>KOG2315|consensus

Probab=98.98  E-value=3.2e-07  Score=81.68  Aligned_cols=278  Identities=16%  Similarity=0.152  Sum_probs=158.2

Q ss_pred             CeeEEEEecCCCcEEEE-----EECC-----CcEEEEECCCCeEEEEec-CCCceeeEEEeCCceEEEEecCCcEEEEEc
Q psy11885         17 GITAVKFAPNSNQFLLA-----SSWD-----CNVSLYDITNNNLRLKYA-HSDPVLDCCFQDAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s-----~~~d-----~~i~iwd~~~~~~~~~~~-h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~   85 (327)
                      .+.++.|+|- +.+|.+     .-.+     -.+++|+++++..+..+. ....-.+..|+....++.=-..+.+.+|++
T Consensus        75 ~~~~L~fSP~-g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~  153 (566)
T KOG2315|consen   75 KTYDLLFSPK-GNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDL  153 (566)
T ss_pred             eeeeeeeccc-ccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEec
Confidence            6778888884 456653     1112     346789888855433222 111113556664444443334567889988


Q ss_pred             CCCceeeeecCCccEEEEEEeCCC--CEEEE-----EECCCeEEEEeCCCCcee-----eeeeCCCc-EEEEecCCCeEE
Q psy11885         86 NTQTETVIGTHDQPIRAVEYSDEV--NCILT-----GSWDTSVKMWDPRSSRCV-----GNYTQPDK-VFTMSLCGEKFV  152 (327)
Q Consensus        86 ~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s-----gs~d~~i~lwdl~~~~~~-----~~~~~~~~-~~~~~~~~~~~~  152 (327)
                      ..-....-.-|...|..+.++|.+  ..+++     +|.-..+|+|........     ++|-..+. .+.+..-|..++
T Consensus       154 ~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LL  233 (566)
T KOG2315|consen  154 GSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALL  233 (566)
T ss_pred             CCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEE
Confidence            763322223356778889998763  33432     355578999987522211     11111111 122222233222


Q ss_pred             -EEe-----------CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccccee
Q psy11885        153 -VGT-----------AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY  220 (327)
Q Consensus       153 -~~~-----------~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  220 (327)
                       .++           ...++.+.++.+.......   ....++.++.+++++..+++.-.-.-..+.+++..-   ...+
T Consensus       234 vLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L---~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---~~v~  307 (566)
T KOG2315|consen  234 VLASTDVDKTNASYYGEQTLYLLATQGESVSVPL---LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---KPVF  307 (566)
T ss_pred             EEEEEeecCCCccccccceEEEEEecCceEEEec---CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---CEeE
Confidence             111           2346777777632211111   112244677788888777665544444444444321   1222


Q ss_pred             eeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCC---CeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        221 AFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD---GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       221 ~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~d---g~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      .+.           ..|=|++-|+|.|++++-+|.+   |.+.|||+.+.+.+..+.....  +-+.|+|||+++.+++.
T Consensus       308 df~-----------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  308 DFP-----------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATT  374 (566)
T ss_pred             eCC-----------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEec
Confidence            111           1255789999999999999886   6899999999888887765433  55799999999999964


Q ss_pred             cccccCCCCCCCCCCcEEEEEccc
Q psy11885        298 YNYELETPPDPIPPNNIFIRHVTD  321 (327)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~  321 (327)
                      -....       -+|+|=|.|.+-
T Consensus       375 aPRlr-------vdNg~KiwhytG  391 (566)
T KOG2315|consen  375 APRLR-------VDNGIKIWHYTG  391 (566)
T ss_pred             cccEE-------ecCCeEEEEecC
Confidence            32111       357777777653

>KOG1354|consensus

Probab=98.97  E-value=2.1e-08  Score=84.08  Aligned_cols=244  Identities=14%  Similarity=0.213  Sum_probs=144.3

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe---EE--EEe-cCC------------CceeeEEEe---CCceEEEE
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN---LR--LKY-AHS------------DPVLDCCFQ---DAVHSFSG   74 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~---~~--~~~-~h~------------~~v~~~~~~---~~~~~~sg   74 (327)
                      +-|.+|.|... +.+||+|..+|.|-++..+...   ..  ..+ .|.            ..|+.+.|.   .....+..
T Consensus        26 diis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   26 DIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             cceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            56889999995 6899999999999999865422   11  111 221            246667773   23344555


Q ss_pred             ecCCcEEEEEcCCCce---------------------ee----------------eecCCccEEEEEEeCCCCEEEEEEC
Q psy11885         75 GLDCTLKMFDFNTQTE---------------------TV----------------IGTHDQPIRAVEYSDEVNCILTGSW  117 (327)
Q Consensus        75 s~Dg~i~vwd~~~~~~---------------------~~----------------~~~h~~~V~~l~~~~~~~~l~sgs~  117 (327)
                      ..|.+|++|.+.....                     ..                -..|+.-|+++.++.|...++|+. 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence            5699999997642110                     00                023667788888988888888764 


Q ss_pred             CCeEEEEeCCC-CceeeeeeC-CC-------cEE--EEecC-CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEE
Q psy11885        118 DTSVKMWDPRS-SRCVGNYTQ-PD-------KVF--TMSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRC  185 (327)
Q Consensus       118 d~~i~lwdl~~-~~~~~~~~~-~~-------~~~--~~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~  185 (327)
                      |-+|.+|+++- ..+...... |.       .+.  .+++. .+.|+-.+..|+||+-|+|....+ ..           
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC-d~-----------  251 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC-DA-----------  251 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh-cc-----------
Confidence            68899999863 222221111 11       111  23332 345777788899999998853311 00           


Q ss_pred             eEEeeCCCceEEEeecCeEEEEEcc-CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeC
Q psy11885        186 IKCFPNKQGYVLSSIEGRAAVEYLD-TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~  264 (327)
                           ..            .+  ++ ...+..+   .    ...    +-++.|..+.|+++|+++++-+ --+|++||+
T Consensus       252 -----hs------------Kl--fEepedp~~r---s----ffs----eiIsSISDvKFs~sGryilsRD-yltvk~wD~  300 (433)
T KOG1354|consen  252 -----HS------------KL--FEEPEDPSSR---S----FFS----EIISSISDVKFSHSGRYILSRD-YLTVKLWDL  300 (433)
T ss_pred             -----hh------------hh--hccccCCcch---h----hHH----HHhhhhhceEEccCCcEEEEec-cceeEEEec
Confidence                 00            00  00 0000000   0    000    1234678899999999999874 379999997


Q ss_pred             -CCceeeeecCcC-----------Cc-ce---EEEEECCCCCEEEEEEccccccCC
Q psy11885        265 -FNKKRLCQFHRY-----------DT-GI---TSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       265 -~~~~~~~~~~~~-----------~~-~v---~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                       ...+++.++.-|           +. .|   ..++||-++.++.+|+..+.+.-.
T Consensus       301 nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf  356 (433)
T KOG1354|consen  301 NMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVF  356 (433)
T ss_pred             cccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEe
Confidence             344444433222           11 22   458999999999999865444433

>KOG1354|consensus

Probab=98.94  E-value=1.1e-08  Score=85.79  Aligned_cols=150  Identities=20%  Similarity=0.373  Sum_probs=94.9

Q ss_pred             CCCeeEEEEecCCCc-EEEEEECCCcEEEEECCCCeEE-----------------------------------EEe--cC
Q psy11885         15 EDGITAVKFAPNSNQ-FLLASSWDCNVSLYDITNNNLR-----------------------------------LKY--AH   56 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~-~l~s~~~d~~i~iwd~~~~~~~-----------------------------------~~~--~h   56 (327)
                      +..|+.|+|.++++. .++..+.|.+|++|.+......                                   ..+  +|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            467899999986543 4445667999999987432110                                   112  36


Q ss_pred             CCceeeEEE-eCCceEEEEecCCcEEEEEcCCCcee--e--eecC-----CccEEEEEEeCCC-CEEEEEECCCeEEEEe
Q psy11885         57 SDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTET--V--IGTH-----DQPIRAVEYSDEV-NCILTGSWDTSVKMWD  125 (327)
Q Consensus        57 ~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~--~--~~~h-----~~~V~~l~~~~~~-~~l~sgs~d~~i~lwd  125 (327)
                      +-.|+++.+ ++...++|+. |=.|.+|+++-....  .  +..+     +..|++..|+|.. +.++-.+..|+||+-|
T Consensus       164 tyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             eeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence            666778887 4666666665 889999998743221  1  1222     2457888999864 5677788899999999


Q ss_pred             CCCCc-eee---eee---CCC----------cE--EEEecCCCeEEEEeCC-CeEEEEECCC
Q psy11885        126 PRSSR-CVG---NYT---QPD----------KV--FTMSLCGEKFVVGTAG-RKVCIWDLRN  167 (327)
Q Consensus       126 l~~~~-~~~---~~~---~~~----------~~--~~~~~~~~~~~~~~~d-~~v~iwD~~~  167 (327)
                      +|... |..   .+.   .+.          .+  +.++.+|.++++  .| -+|++||+..
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryils--RDyltvk~wD~nm  302 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILS--RDYLTVKLWDLNM  302 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEE--eccceeEEEeccc
Confidence            98542 211   111   111          11  234556777765  34 6899999853

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.93  E-value=2.5e-05  Score=69.34  Aligned_cols=259  Identities=14%  Similarity=0.108  Sum_probs=145.3

Q ss_pred             CCeeEEEEecCCCcEEEEEEC----CCcEEEEECCC--CeEEEE--ec-CCCceeeEEE-eCCceEEEEe-cCCcEEEEE
Q psy11885         16 DGITAVKFAPNSNQFLLASSW----DCNVSLYDITN--NNLRLK--YA-HSDPVLDCCF-QDAVHSFSGG-LDCTLKMFD   84 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~----d~~i~iwd~~~--~~~~~~--~~-h~~~v~~~~~-~~~~~~~sgs-~Dg~i~vwd   84 (327)
                      ....-++++|+ +++|.+...    ++.|..|.+..  +++...  .. .......+++ +++.+++.+. .+|+|.+++
T Consensus        37 ~~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   37 ENPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            45567889995 466776655    57899998876  454322  22 2334455666 4777777665 589999999


Q ss_pred             cCCC-cee-e--eec-----------CCccEEEEEEeCCCCEEEEEEC-CCeEEEEeCCCCc--ee--eeeeCC----Cc
Q psy11885         85 FNTQ-TET-V--IGT-----------HDQPIRAVEYSDEVNCILTGSW-DTSVKMWDPRSSR--CV--GNYTQP----DK  140 (327)
Q Consensus        85 ~~~~-~~~-~--~~~-----------h~~~V~~l~~~~~~~~l~sgs~-d~~i~lwdl~~~~--~~--~~~~~~----~~  140 (327)
                      ++.. ... .  ...           ...-..++.++|+++++++... ...|++|++....  ..  ..+..+    ..
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            9864 211 1  111           1234678999999998887643 4589999987654  32  222221    13


Q ss_pred             EEEEecCCCeEEEEe-CCCeEEEEECC--CCccceeeecccc----e--eeeEEeEEeeCCCceEEEee-cCeEEEEEcc
Q psy11885        141 VFTMSLCGEKFVVGT-AGRKVCIWDLR--NMGYIMQRRESSL----K--FQTRCIKCFPNKQGYVLSSI-EGRAAVEYLD  210 (327)
Q Consensus       141 ~~~~~~~~~~~~~~~-~d~~v~iwD~~--~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~  210 (327)
                      -+.++++++.+++.. .+++|.++++.  ++..........+    .  .....++++|+++.+.++.. .+.+.++.++
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            467888888876654 57789999887  2221111111111    0  13456778888876666554 3445555553


Q ss_pred             CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC-CCeEEEEeC--CCceeeeecC--cCCcceEEEEE
Q psy11885        211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DGYVNIWDG--FNKKRLCQFH--RYDTGITSLCF  285 (327)
Q Consensus       211 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~-dg~i~iWd~--~~~~~~~~~~--~~~~~v~~l~f  285 (327)
                      ...........+..   .  +    .....++++|+|++|+++.. ++.|.+|++  .+|.....-.  .-. ...||.|
T Consensus       276 ~~~g~l~~~~~~~~---~--G----~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~-~p~ci~f  345 (345)
T PF10282_consen  276 PATGTLTLVQTVPT---G--G----KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIP-SPVCIVF  345 (345)
T ss_dssp             TTTTTEEEEEEEEE---S--S----SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESS-SEEEEEE
T ss_pred             cCCCceEEEEEEeC---C--C----CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCC-CCEEEeC
Confidence            32111111111110   0  0    01567999999999988765 578999865  4665433221  122 3457766

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1334|consensus

Probab=98.91  E-value=1.9e-08  Score=87.93  Aligned_cols=247  Identities=13%  Similarity=0.109  Sum_probs=157.5

Q ss_pred             ecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCcee--eeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCC
Q psy11885         54 YAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTET--VIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRS  128 (327)
Q Consensus        54 ~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~--~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~  128 (327)
                      -.|.+.|..+-| +.+..++|||.|..|.+||-.+....  ...+|...|-.-.|-|.  .+.+++.+.||.+|+=.+-.
T Consensus       139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~  218 (559)
T KOG1334|consen  139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE  218 (559)
T ss_pred             cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence            358888999998 58899999999999999998776543  45688887777677663  36799999999999876533


Q ss_pred             -Ccee-----eeeeCCCcEEEEec-CCCeEEEEeCCCeEEEEECCCCccc----eeeecccceeeeEEeEEeeCC-CceE
Q psy11885        129 -SRCV-----GNYTQPDKVFTMSL-CGEKFVVGTAGRKVCIWDLRNMGYI----MQRRESSLKFQTRCIKCFPNK-QGYV  196 (327)
Q Consensus       129 -~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwD~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~  196 (327)
                       +.+.     .....+...+++.+ ++..|.+++.|+.|.-+|+++....    +.............++..|.. ..++
T Consensus       219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa  298 (559)
T KOG1334|consen  219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA  298 (559)
T ss_pred             ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence             3222     22333444455555 3677999999999999999875431    111111212344556666644 3566


Q ss_pred             EEeecCeEEEEEccCCcc----cccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC--Cc---
Q psy11885        197 LSSIEGRAAVEYLDTGPE----MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF--NK---  267 (327)
Q Consensus       197 ~~~~~~~~~i~~~~~~~~----~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~--~~---  267 (327)
                      ++..+...++  ++....    ...+.-.+..|.+.++..   -.|++++|+.++.-|.++-.|-.|+++.-.  .|   
T Consensus       299 VgG~dqf~Rv--YD~R~~~~e~~n~~~~~f~p~hl~~d~~---v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p  373 (559)
T KOG1334|consen  299 VGGSDQFARV--YDQRRIDKEENNGVLDKFCPHHLVEDDP---VNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP  373 (559)
T ss_pred             cCChhhhhhh--hcccchhhccccchhhhcCCccccccCc---ccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence            6666655554  332211    011111222232222211   137899999888777777788889999522  12   


Q ss_pred             -------eeeee-cCcCCc--ceEEEE-ECCCCCEEEEEEccccccCCC
Q psy11885        268 -------KRLCQ-FHRYDT--GITSLC-FSYDGNVLAIACSYNYELETP  305 (327)
Q Consensus       268 -------~~~~~-~~~~~~--~v~~l~-fspdg~~la~~~~~~~~~~~~  305 (327)
                             ..+.. +++|..  .|..+- |-|...|+++|+.++.+..|.
T Consensus       374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence                   11122 556643  477774 568889999999888877764

>KOG2321|consensus

Probab=98.89  E-value=4.8e-07  Score=80.85  Aligned_cols=236  Identities=15%  Similarity=0.111  Sum_probs=135.7

Q ss_pred             ecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceeeeecCCc-cEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885         54 YAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETVIGTHDQ-PIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR  130 (327)
Q Consensus        54 ~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~  130 (327)
                      +.+....+.+..+ +|.+++ +|-..-.|++||+..-..++-...++ .|...-.+.|-..++---.|.+|.+-.- .|.
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~  126 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGR  126 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCe
Confidence            3455666666664 777765 66678899999997654443322233 4555555666555565667777765432 111


Q ss_pred             eeeeeeCC--CcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEE
Q psy11885        131 CVGNYTQP--DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEY  208 (327)
Q Consensus       131 ~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  208 (327)
                       ......|  +.-++++-..-.+++++....|.-+++.++........  -....+++..++-...+++|+.+|.  |..
T Consensus       127 -hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~--~~~~lN~v~in~~hgLla~Gt~~g~--VEf  201 (703)
T KOG2321|consen  127 -HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET--DSGELNVVSINEEHGLLACGTEDGV--VEF  201 (703)
T ss_pred             -eeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc--ccccceeeeecCccceEEecccCce--EEE
Confidence             1111122  22233332233466777778888899987754311111  1122355666666555666665655  455


Q ss_pred             ccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeee-ecCcCCcceEEEEECC
Q psy11885        209 LDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC-QFHRYDTGITSLCFSY  287 (327)
Q Consensus       209 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~-~~~~~~~~v~~l~fsp  287 (327)
                      ||.......-......+.....+......|+++.|+.+|-.+++|..+|.|.|||++..+++. .-+..+-+|..+.|-+
T Consensus       202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~  281 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD  281 (703)
T ss_pred             ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence            775442211111111110000011112358999999999999999999999999999877654 3345566899999977


Q ss_pred             C--CCEEEEE
Q psy11885        288 D--GNVLAIA  295 (327)
Q Consensus       288 d--g~~la~~  295 (327)
                      .  +..|++.
T Consensus       282 ~~~q~~v~S~  291 (703)
T KOG2321|consen  282 TDQQNKVVSM  291 (703)
T ss_pred             cCCCceEEec
Confidence            6  4555554

>KOG2315|consensus

Probab=98.89  E-value=6.1e-07  Score=79.97  Aligned_cols=156  Identities=17%  Similarity=0.277  Sum_probs=98.7

Q ss_pred             CCCCCCeeEEEEecC-CCcEEEE-----EECCCcEEEEECCCCeEEE-----EecCCCceeeEEEe-CCc-eE--EEEec
Q psy11885         12 SPPEDGITAVKFAPN-SNQFLLA-----SSWDCNVSLYDITNNNLRL-----KYAHSDPVLDCCFQ-DAV-HS--FSGGL   76 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~-~~~~l~s-----~~~d~~i~iwd~~~~~~~~-----~~~h~~~v~~~~~~-~~~-~~--~sgs~   76 (327)
                      ..|..+|+..++||. ...++|+     .|+-..+|||...-+....     .+...+.| .+.|. .+. .|  ++...
T Consensus       162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv-qm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKV-QMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccccee-EEEeccCCceEEEEEEEee
Confidence            345678999999994 2345654     4566789999886322111     11112222 23343 222 22  23333


Q ss_pred             CC---------cEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEE--EECCCeEEEEeCCCCceeeeee-CCCcEEEE
Q psy11885         77 DC---------TLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILT--GSWDTSVKMWDPRSSRCVGNYT-QPDKVFTM  144 (327)
Q Consensus        77 Dg---------~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s--gs~d~~i~lwdl~~~~~~~~~~-~~~~~~~~  144 (327)
                      |.         ++.+.++++....+-..-++||.++.|++++..++.  |-+-.++-+||++. +++..+. ++-...-+
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~egpRN~~~f  319 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEGPRNTAFF  319 (566)
T ss_pred             cCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCCCccceEE
Confidence            43         566667663333333345789999999999977654  56778999999974 4555554 45556778


Q ss_pred             ecCCCeEEEEeCC---CeEEEEECCCCc
Q psy11885        145 SLCGEKFVVGTAG---RKVCIWDLRNMG  169 (327)
Q Consensus       145 ~~~~~~~~~~~~d---~~v~iwD~~~~~  169 (327)
                      ++.|+.++.++-+   |.+.+||+.+.+
T Consensus       320 np~g~ii~lAGFGNL~G~mEvwDv~n~K  347 (566)
T KOG2315|consen  320 NPHGNIILLAGFGNLPGDMEVWDVPNRK  347 (566)
T ss_pred             CCCCCEEEEeecCCCCCceEEEeccchh
Confidence            8899988877654   689999998754

>KOG0280|consensus

Probab=98.89  E-value=5.9e-07  Score=74.03  Aligned_cols=154  Identities=18%  Similarity=0.178  Sum_probs=100.2

Q ss_pred             CeeEEEEec--CCCc-EEEEEECCCcEEEEECCCCeE-EEEec---CCCce---eeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885         17 GITAVKFAP--NSNQ-FLLASSWDCNVSLYDITNNNL-RLKYA---HSDPV---LDCCFQ-DAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        17 ~I~~i~fs~--~~~~-~l~s~~~d~~i~iwd~~~~~~-~~~~~---h~~~v---~~~~~~-~~~~~~sgs~Dg~i~vwd~   85 (327)
                      .++.+.|.-  .++. .|+-+..+|.|+++....... ..+.+   ..-.+   .++.|+ .+..++++-.+|.+-+-+.
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~  150 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE  150 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence            456666663  2333 456667788999997654332 22222   11122   234454 5667888888999885443


Q ss_pred             CCCc-e--eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCC-Cceeeeee--CCCcEEEEec---CCCeEEEEe
Q psy11885         86 NTQT-E--TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRS-SRCVGNYT--QPDKVFTMSL---CGEKFVVGT  155 (327)
Q Consensus        86 ~~~~-~--~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~-~~~~~~~~--~~~~~~~~~~---~~~~~~~~~  155 (327)
                      .... +  +....|+.+.+...|+. +.+.+++|+.|+.+..||+|. ++.+....  +...+.++..   .+..+++|+
T Consensus       151 t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs  230 (339)
T KOG0280|consen  151 TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS  230 (339)
T ss_pred             ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec
Confidence            3322 2  24568999999999975 568899999999999999993 44444322  1223344433   356899999


Q ss_pred             CCCeEEEEECCCCcc
Q psy11885        156 AGRKVCIWDLRNMGY  170 (327)
Q Consensus       156 ~d~~v~iwD~~~~~~  170 (327)
                      .|..|++||.|++..
T Consensus       231 YDe~i~~~DtRnm~k  245 (339)
T KOG0280|consen  231 YDECIRVLDTRNMGK  245 (339)
T ss_pred             cccceeeeehhcccC
Confidence            999999999997653

>KOG2041|consensus

Probab=98.88  E-value=7.1e-07  Score=81.85  Aligned_cols=273  Identities=11%  Similarity=0.120  Sum_probs=161.2

Q ss_pred             eecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----EE------------EEecCCCceeeEEEeCCceE
Q psy11885          8 YSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LR------------LKYAHSDPVLDCCFQDAVHS   71 (327)
Q Consensus         8 ~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~~------------~~~~h~~~v~~~~~~~~~~~   71 (327)
                      .+...+......|++|+.++ .|+|.||.||.+++-.+.+..    ..            .+.+|+..|.-+.|.+..+-
T Consensus         7 kki~iPnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK   85 (1189)
T KOG2041|consen    7 KKIGIPNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK   85 (1189)
T ss_pred             cccCCCCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc
Confidence            34456666778999999964 699999999999999876421    11            13469999999999865555


Q ss_pred             E-EEecCCcEEEEEcCCCce--eeee-cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceee-eeeCC-CcEEEEe
Q psy11885         72 F-SGGLDCTLKMFDFNTQTE--TVIG-THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVG-NYTQP-DKVFTMS  145 (327)
Q Consensus        72 ~-sgs~Dg~i~vwd~~~~~~--~~~~-~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~-~~~~~-~~~~~~~  145 (327)
                      + |...+|.|.+|-+-.+.-  ..+. ...+.|.+++|..||..+.....||.|-+=.+..+.... .+... -.-..++
T Consensus        86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws  165 (1189)
T KOG2041|consen   86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWS  165 (1189)
T ss_pred             ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeec
Confidence            5 566689999998755532  2222 245678999999999999888888887655443322111 11110 0112334


Q ss_pred             cCCCeEEEEeCCCeEEEEECCCCccceeeecc---------cceeeeEEeEE--------eeCCCceEEEeecCeEEEEE
Q psy11885        146 LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRES---------SLKFQTRCIKC--------FPNKQGYVLSSIEGRAAVEY  208 (327)
Q Consensus       146 ~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~---------~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~  208 (327)
                      .+.+.++.+-..|...++|....-.+......         ..+.....+.+        -|+.+.+++.-..|...+-.
T Consensus       166 ~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR  245 (1189)
T KOG2041|consen  166 EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR  245 (1189)
T ss_pred             ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence            44455666677888999987532110000000         00000001111        12223333333333322211


Q ss_pred             ccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCC---------eEEEEeCCCceeeeecCcCCcc
Q psy11885        209 LDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG---------YVNIWDGFNKKRLCQFHRYDTG  279 (327)
Q Consensus       209 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg---------~i~iWd~~~~~~~~~~~~~~~~  279 (327)
                      -...+  ..+...            .-..+....|+++|..||++|.|.         .|.++.. -|+.+.+++...+.
T Consensus       246 ~eND~--~Pvv~d------------tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~  310 (1189)
T KOG2041|consen  246 SENDP--EPVVVD------------TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSC  310 (1189)
T ss_pred             hcCCC--CCeEEe------------cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCce
Confidence            00000  000000            001356789999999999987643         5666663 35677788777788


Q ss_pred             eEEEEECCCCCEEEEEE
Q psy11885        280 ITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       280 v~~l~fspdg~~la~~~  296 (327)
                      |++++|--.|-.+|.+-
T Consensus       311 It~lsWEg~gLriA~Av  327 (1189)
T KOG2041|consen  311 ITGLSWEGTGLRIAIAV  327 (1189)
T ss_pred             eeeeEEcCCceEEEEEe
Confidence            99999988888888774

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.88  E-value=7.2e-06  Score=73.83  Aligned_cols=227  Identities=15%  Similarity=0.105  Sum_probs=128.9

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCC
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDE  108 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~  108 (327)
                      ..+++++.++.+.-+|..+|+..-.......+...-..++..++.++.++.+..+|.++++..........+.+.... .
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~  144 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV-A  144 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE-E
Confidence            467778889999999999998654433333332222235678888889999999999887764432222222221111 2


Q ss_pred             CCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEE------ecCCCeEEEEeCCCeEEEEECCCCccceeeecccce--
Q psy11885        109 VNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTM------SLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK--  180 (327)
Q Consensus       109 ~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~--  180 (327)
                      +..++.++.++.|..||.++++.++++.........      ...+..++++..++.+..+|.++++...........  
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~  224 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR  224 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence            456777888999999999999988876543322111      112456778888899999999887643221110000  


Q ss_pred             eee---EEeEEe--eCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC
Q psy11885        181 FQT---RCIKCF--PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS  255 (327)
Q Consensus       181 ~~~---~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~  255 (327)
                      ...   ..+...  ..++.+.+++.++........++.    ..+...   ..        ....  ...++..+..++.
T Consensus       225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~----~~W~~~---~~--------~~~~--p~~~~~~vyv~~~  287 (377)
T TIGR03300       225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR----VLWKRD---AS--------SYQG--PAVDDNRLYVTDA  287 (377)
T ss_pred             CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc----EEEeec---cC--------CccC--ceEeCCEEEEECC
Confidence            000   000000  112334444444444332222221    111110   00        0111  1234567888889


Q ss_pred             CCeEEEEeCCCceeeeec
Q psy11885        256 DGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       256 dg~i~iWd~~~~~~~~~~  273 (327)
                      ||.+..+|..+++.+...
T Consensus       288 ~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       288 DGVVVALDRRSGSELWKN  305 (377)
T ss_pred             CCeEEEEECCCCcEEEcc
Confidence            999999999998877654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=1.6e-06  Score=79.11  Aligned_cols=214  Identities=12%  Similarity=0.025  Sum_probs=119.2

Q ss_pred             CeeEEEEecCCCc--EEEEEECCC--cEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEec-----CCcEEEEEcC
Q psy11885         17 GITAVKFAPNSNQ--FLLASSWDC--NVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGL-----DCTLKMFDFN   86 (327)
Q Consensus        17 ~I~~i~fs~~~~~--~l~s~~~d~--~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~-----Dg~i~vwd~~   86 (327)
                      .+..=+|+|++.+  ++++.-.++  .|.+.++.+++.......++.....+|+ ++.+++..+.     |..+..|++.
T Consensus       186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~  265 (428)
T PRK01029        186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE  265 (428)
T ss_pred             CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence            4456699998654  333444443  5777788888755444444455566785 7777764432     2234447766


Q ss_pred             CC---cee-eeecCCccEEEEEEeCCCCEEEEEE-CCCeEEEEe--CCC-CceeeeeeC---CCcEEEEecCCCeEEEEe
Q psy11885         87 TQ---TET-VIGTHDQPIRAVEYSDEVNCILTGS-WDTSVKMWD--PRS-SRCVGNYTQ---PDKVFTMSLCGEKFVVGT  155 (327)
Q Consensus        87 ~~---~~~-~~~~h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwd--l~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~  155 (327)
                      .+   ... .+..+........|+|||+.|+..+ .++..++|.  +.. +.....+..   ......++++|+.++..+
T Consensus       266 ~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~  345 (428)
T PRK01029        266 TGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCS  345 (428)
T ss_pred             cCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEE
Confidence            42   222 2222223345679999999877655 466556654  432 222222222   123456788888877654


Q ss_pred             CC---CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCe
Q psy11885        156 AG---RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI  232 (327)
Q Consensus       156 ~d---~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~  232 (327)
                      .+   ..|.+||+.+++..             .                    +  ... .                   
T Consensus       346 ~~~g~~~I~v~dl~~g~~~-------------~--------------------L--t~~-~-------------------  370 (428)
T PRK01029        346 VIKGVRQICVYDLATGRDY-------------Q--------------------L--TTS-P-------------------  370 (428)
T ss_pred             cCCCCcEEEEEECCCCCeE-------------E--------------------c--cCC-C-------------------
Confidence            43   35777776543210             0                    0  000 0                   


Q ss_pred             eeEEEeeEEEEecCCCeEEE-ecC--CCeEEEEeCCCceeeeecCcCCcceEEEEECCCC
Q psy11885        233 EKIYPVNAISFHQEYNTFAT-GGS--DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDG  289 (327)
Q Consensus       233 ~~~~~v~~v~~spd~~~las-gs~--dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg  289 (327)
                         ..+....|+|||+.|+. +..  ...|++||+..++.. .+......+...+|||-.
T Consensus       371 ---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        371 ---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             ---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCcccCceecCCC
Confidence               01234689999998774 333  346888898776543 332333445677888854

>KOG1409|consensus

Probab=98.83  E-value=1.9e-07  Score=78.45  Aligned_cols=158  Identities=16%  Similarity=0.300  Sum_probs=101.2

Q ss_pred             ecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCC
Q psy11885          9 SLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus         9 ~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      +....|...|.++-|+. ...++++.+.|..+.-.-.+.+...--+-.......+.+ +-...+.|...|.|.+-.+...
T Consensus       108 r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~-d~~~~fvGd~~gqvt~lr~~~~  185 (404)
T KOG1409|consen  108 KDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQF-DALYAFVGDHSGQITMLKLEQN  185 (404)
T ss_pred             hhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCce-eeEEEEecccccceEEEEEeec
Confidence            34567888999999998 457899999998877666665542211110001011111 1114455555666666555443


Q ss_pred             ce---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceee-eeeC-CCcE--EEEecCCCeEEEEeCCCeEE
Q psy11885         89 TE---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVG-NYTQ-PDKV--FTMSLCGEKFVVGTAGRKVC  161 (327)
Q Consensus        89 ~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~-~~~~-~~~~--~~~~~~~~~~~~~~~d~~v~  161 (327)
                      ..   ..+.+|.+++.+++|.+....+++|..|..+-+||+..++-+. ++.. .+.+  .+....-.++.+++.||.|.
T Consensus       186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~  265 (404)
T KOG1409|consen  186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV  265 (404)
T ss_pred             CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence            32   3466899999999999999999999999999999997654322 1211 1112  12222345688999999999


Q ss_pred             EEECCCC
Q psy11885        162 IWDLRNM  168 (327)
Q Consensus       162 iwD~~~~  168 (327)
                      +||++..
T Consensus       266 ~w~mn~~  272 (404)
T KOG1409|consen  266 VWNMNVK  272 (404)
T ss_pred             EEeccce
Confidence            9999753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.83  E-value=2.1e-05  Score=68.99  Aligned_cols=234  Identities=10%  Similarity=-0.003  Sum_probs=121.8

Q ss_pred             EecCCCcEEEEEE---------CCCcEEEEECCCCeEEEEecC-CC-------ceeeEEE-eCCceEEEEe-c-CCcEEE
Q psy11885         23 FAPNSNQFLLASS---------WDCNVSLYDITNNNLRLKYAH-SD-------PVLDCCF-QDAVHSFSGG-L-DCTLKM   82 (327)
Q Consensus        23 fs~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~h-~~-------~v~~~~~-~~~~~~~sgs-~-Dg~i~v   82 (327)
                      ++|++..++++.+         .++.|.+||..+.+....... .+       .....++ +++.+++... . +..|-+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8997655555555         578999999999886543321 11       1124455 4778888665 3 689999


Q ss_pred             EEcCCCceee-eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC-Ccee-ee---eeC-C----CcEEEEec-CCCe
Q psy11885         83 FDFNTQTETV-IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS-SRCV-GN---YTQ-P----DKVFTMSL-CGEK  150 (327)
Q Consensus        83 wd~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-~~~~-~~---~~~-~----~~~~~~~~-~~~~  150 (327)
                      .|+.+++... +.. .+...-...+++...  .-..|++.....+.. ++.. ..   +.. .    ... .+.. ++..
T Consensus       133 vD~~~~kvv~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~  208 (352)
T TIGR02658       133 VDLEGKAFVRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRL  208 (352)
T ss_pred             EECCCCcEEEEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCcE
Confidence            9998876432 221 112222222221111  112334333322221 1111 00   111 0    000 1233 4555


Q ss_pred             EEEEeCCCeEEEEECCCCccceeeecc---------cc-eeeeEEeEEeeCCCceEEEeec--------CeEEEEEccCC
Q psy11885        151 FVVGTAGRKVCIWDLRNMGYIMQRRES---------SL-KFQTRCIKCFPNKQGYVLSSIE--------GRAAVEYLDTG  212 (327)
Q Consensus       151 ~~~~~~d~~v~iwD~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~  212 (327)
                      +.+..+ |+|.+-|+...+........         .. +.....++++++++.+.+....        +...++.+|..
T Consensus       209 ~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~  287 (352)
T TIGR02658       209 VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK  287 (352)
T ss_pred             EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence            555555 99999996543221110000         00 0011237788777666654322        22355556543


Q ss_pred             cccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC-eEEEec-CCCeEEEEeCCCceeeeec
Q psy11885        213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGG-SDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       213 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~-~lasgs-~dg~i~iWd~~~~~~~~~~  273 (327)
                      .... +....-.           ..+..++++||++ .|.+.. .++.|.+.|..+++.+..+
T Consensus       288 t~kv-i~~i~vG-----------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       288 TGKR-LRKIELG-----------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCeE-EEEEeCC-----------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            3211 1110000           1467899999999 777665 5788999999999988887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.83  E-value=4.6e-05  Score=64.92  Aligned_cols=257  Identities=10%  Similarity=0.101  Sum_probs=154.4

Q ss_pred             CCcEEEEECCCC--eE--EEEecCCCceeeEEEe-CCceEEEEec---CCcEEEEEcCC--Cceeeeec---CCccEEEE
Q psy11885         37 DCNVSLYDITNN--NL--RLKYAHSDPVLDCCFQ-DAVHSFSGGL---DCTLKMFDFNT--QTETVIGT---HDQPIRAV  103 (327)
Q Consensus        37 d~~i~iwd~~~~--~~--~~~~~h~~~v~~~~~~-~~~~~~sgs~---Dg~i~vwd~~~--~~~~~~~~---h~~~V~~l  103 (327)
                      +.-|++|++.+.  ++  .....+...+.-+++. +..+|+++-.   +|.|-.|.++.  +....+..   -..+-.-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            467999999743  32  3334566677788885 5668887755   47788887765  44433321   12233778


Q ss_pred             EEeCCCCEEEEEEC-CCeEEEEeCCC-Cce---eeeeeCC------------CcEEEEecCCCeEEEEeC-CCeEEEEEC
Q psy11885        104 EYSDEVNCILTGSW-DTSVKMWDPRS-SRC---VGNYTQP------------DKVFTMSLCGEKFVVGTA-GRKVCIWDL  165 (327)
Q Consensus       104 ~~~~~~~~l~sgs~-d~~i~lwdl~~-~~~---~~~~~~~------------~~~~~~~~~~~~~~~~~~-d~~v~iwD~  165 (327)
                      ++++++++++++.+ -|.|.++-++. |..   ++...+.            .....+.+.++.+++... -..|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999999998865 58999998866 322   2222211            223456677877777643 347999999


Q ss_pred             CCCccceeeeccc-ceeeeEEeEEeeCCCce-EEEeecCeEEEEEccCCc-ccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        166 RNMGYIMQRRESS-LKFQTRCIKCFPNKQGY-VLSSIEGRAAVEYLDTGP-EMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       166 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                      ..++......... -..-++.+.|+|+++.. ++...++.+.++-++... ....+..   .+.+. ..+.......+|.
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~---i~tlP-~dF~g~~~~aaIh  250 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT---IDTLP-EDFTGTNWAAAIH  250 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee---eccCc-cccCCCCceeEEE
Confidence            8554321111111 11235889999998754 556677888887766531 1111111   11111 1222223467889


Q ss_pred             EecCCCeEEEecCC-CeEEEEeCCCc-eeeee---cCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        243 FHQEYNTFATGGSD-GYVNIWDGFNK-KRLCQ---FHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       243 ~spd~~~lasgs~d-g~i~iWd~~~~-~~~~~---~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      .+|||++|.+.-.. ..|-++.+..- ..+..   ...+...-....|+|+|++|+++.-
T Consensus       251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence            99999999876442 46777765432 22221   1222222478999999999999864

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.79  E-value=7.9e-06  Score=68.44  Aligned_cols=218  Identities=17%  Similarity=0.111  Sum_probs=125.5

Q ss_pred             CCcEEEEECCCCeEEEEecCCC---ceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEE
Q psy11885         37 DCNVSLYDITNNNLRLKYAHSD---PVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL  113 (327)
Q Consensus        37 d~~i~iwd~~~~~~~~~~~h~~---~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  113 (327)
                      +|+|..||..+|+..-......   ...+....++..+++++.++.+..||..+++..........+.... ..++..++
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~   80 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVY   80 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccc
Confidence            6889999998888655444321   1222234467788888899999999998887543222122111111 22345677


Q ss_pred             EEECCCeEEEEeCCCCceeeee-eCC----C--cEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccce--eee-
Q psy11885        114 TGSWDTSVKMWDPRSSRCVGNY-TQP----D--KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK--FQT-  183 (327)
Q Consensus       114 sgs~d~~i~lwdl~~~~~~~~~-~~~----~--~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~--~~~-  183 (327)
                      .++.|+.|..+|.++++.++.. ...    .  ........++.++++..++.|..+|+++++.+-......-.  .+. 
T Consensus        81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~  160 (238)
T PF13360_consen   81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS  160 (238)
T ss_dssp             EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred             cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee
Confidence            7788999999999999988874 322    1  11233344888999998999999999988764333221111  000 


Q ss_pred             ----EEeEEeeCCCceEEEeecCe-EEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCe
Q psy11885        184 ----RCIKCFPNKQGYVLSSIEGR-AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY  258 (327)
Q Consensus       184 ----~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~  258 (327)
                          ......-....+.++..++. ..+ ....+.  .  .+....+           .+.. ...+++..|+.++.++.
T Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~--~--~w~~~~~-----------~~~~-~~~~~~~~l~~~~~~~~  223 (238)
T PF13360_consen  161 SFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGE--K--LWSKPIS-----------GIYS-LPSVDGGTLYVTSSDGR  223 (238)
T ss_dssp             EETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTE--E--EEEECSS------------ECE-CEECCCTEEEEEETTTE
T ss_pred             eecccccceEEECCEEEEEcCCCeEEEE-ECCCCC--E--EEEecCC-----------CccC-CceeeCCEEEEEeCCCE
Confidence                00111111223344444443 222 222221  0  0110000           0111 13467788888889999


Q ss_pred             EEEEeCCCceeeee
Q psy11885        259 VNIWDGFNKKRLCQ  272 (327)
Q Consensus       259 i~iWd~~~~~~~~~  272 (327)
                      +..||..+++.+.+
T Consensus       224 l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  224 LYALDLKTGKVVWQ  237 (238)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEEECCCCCEEeE
Confidence            99999999987653

...

>KOG2314|consensus

Probab=98.78  E-value=4.9e-06  Score=74.37  Aligned_cols=266  Identities=13%  Similarity=0.154  Sum_probs=144.9

Q ss_pred             CeeEEEEecCCCcEEEEEEC-----------CCcEEEEECCCCeEEEEec---CCCcee-eEEEe-CCceEEEEecCCcE
Q psy11885         17 GITAVKFAPNSNQFLLASSW-----------DCNVSLYDITNNNLRLKYA---HSDPVL-DCCFQ-DAVHSFSGGLDCTL   80 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~---h~~~v~-~~~~~-~~~~~~sgs~Dg~i   80 (327)
                      +|.-+.|||. ..||+|=|.           ...+.|||+.+|.+...+.   .+..+. -..|+ ++.+++--. -.+|
T Consensus       251 ~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~-~~si  328 (698)
T KOG2314|consen  251 GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT-GNSI  328 (698)
T ss_pred             CceeeecCCc-cceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEec-cceE
Confidence            6899999995 679998543           2579999999998654432   122222 34565 666665333 3678


Q ss_pred             EEEEcCCCceeeeec---CCccEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCceeeeee---CCCcEEEEecCCC
Q psy11885         81 KMFDFNTQTETVIGT---HDQPIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCVGNYT---QPDKVFTMSLCGE  149 (327)
Q Consensus        81 ~vwd~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~~~~~---~~~~~~~~~~~~~  149 (327)
                      .+++..+-  ..+..   .-..|....|+|.++.|+--+..     .++-+-.+.++..+++-.   ..+.-+-+.-+|+
T Consensus       329 sIyEtpsf--~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd  406 (698)
T KOG2314|consen  329 SIYETPSF--MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD  406 (698)
T ss_pred             EEEecCce--eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence            89986552  12211   12458888999988777654332     234444444444333211   1111122333466


Q ss_pred             eEEEEeC-------CC---eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeec-CeEEEEEccCCcccccc
Q psy11885        150 KFVVGTA-------GR---KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKM  218 (327)
Q Consensus       150 ~~~~~~~-------d~---~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~  218 (327)
                      +|++-..       .|   .+.|+.++........  -.+....-..++.|.++.+++-+.. ....+..+.........
T Consensus       407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~--velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~  484 (698)
T KOG2314|consen  407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV--VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP  484 (698)
T ss_pred             EEEEEEEeeccccccceEeeEEEEEeeccCCCcee--eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch
Confidence            6554211       11   3556666644321110  1122223445677888877765543 23333333322111000


Q ss_pred             eeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEe---cCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEE
Q psy11885        219 KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATG---GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       219 ~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasg---s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~  295 (327)
                      ....        .+.. -..+.+.|+|.|+.++++   |..|.+.++|+........-..-+...+.+-|.|.|+|++++
T Consensus       485 ~lVk--------~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~  555 (698)
T KOG2314|consen  485 SLVK--------ELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTS  555 (698)
T ss_pred             hhhh--------hhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEe
Confidence            0000        0000 136889999999998876   456889999977322222211122345789999999999998


Q ss_pred             Ec
Q psy11885        296 CS  297 (327)
Q Consensus       296 ~~  297 (327)
                      ++
T Consensus       556 ss  557 (698)
T KOG2314|consen  556 SS  557 (698)
T ss_pred             ee
Confidence            76

>KOG3914|consensus

Probab=98.73  E-value=3.3e-07  Score=78.48  Aligned_cols=152  Identities=14%  Similarity=0.182  Sum_probs=99.2

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCCCe----EEEEecCCCceeeEEEe-CCceEE---EEecCCcEEEEEcCCCce
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LRLKYAHSDPVLDCCFQ-DAVHSF---SGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~h~~~v~~~~~~-~~~~~~---sgs~Dg~i~vwd~~~~~~   90 (327)
                      ..+.+++ +++++|.+..+....+++.....    +...+.-...-..+.|. +.....   ..+....+.+|....+..
T Consensus        66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            3455566 56788888777776666654332    22223333333444442 222222   455566777777766666


Q ss_pred             eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-C-CcEEEEecC-CCeEEEEeCCCeEEEEECCC
Q psy11885         91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-P-DKVFTMSLC-GEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus        91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-~-~~~~~~~~~-~~~~~~~~~d~~v~iwD~~~  167 (327)
                      ..+-+|-.-+..|+++||++.|+++..|..||+-....--.+..+.. + ..+..++.- +..|++++.|++|++||+++
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEeccc
Confidence            66778999999999999999999999999999877654444444332 2 223334333 44579999999999999998


Q ss_pred             Cccc
Q psy11885        168 MGYI  171 (327)
Q Consensus       168 ~~~~  171 (327)
                      ++..
T Consensus       225 gk~L  228 (390)
T KOG3914|consen  225 GKLL  228 (390)
T ss_pred             CCcc
Confidence            8754

>KOG2695|consensus

Probab=98.70  E-value=1e-07  Score=80.09  Aligned_cols=163  Identities=19%  Similarity=0.298  Sum_probs=107.5

Q ss_pred             EEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC-----ceeeeeeCCCcEEE---
Q psy11885         72 FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS-----RCVGNYTQPDKVFT---  143 (327)
Q Consensus        72 ~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~-----~~~~~~~~~~~~~~---  143 (327)
                      ++.|.+..|-+-|++++....+. ..+.|.++.|...++++.-|...|.|...|+|++     .+.+.+-++..+.+   
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence            66777888888888877655444 4567888999988899999999999999999875     23444444433333   


Q ss_pred             EecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeee
Q psy11885        144 MSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFK  223 (327)
Q Consensus       144 ~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  223 (327)
                      +.++++.+.+.+.+|+|++||+|..+.-.     .                  +-..+|+                    
T Consensus       307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~-----~------------------V~qYeGH--------------------  343 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGKIKLYDLRATKCKK-----S------------------VMQYEGH--------------------  343 (425)
T ss_pred             hccccceEeeccCcCceeEeeehhhhccc-----c------------------eeeeecc--------------------
Confidence            34467889999999999999998654200     0                  0001111                    


Q ss_pred             eeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcC----CcceEEEEECC
Q psy11885        224 CHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY----DTGITSLCFSY  287 (327)
Q Consensus       224 ~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~----~~~v~~l~fsp  287 (327)
                        ....       ...-+-.++....++++++|...|||.+.++..+.++.-.    +..+++++|+.
T Consensus       344 --vN~~-------a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  344 --VNLS-------AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             --cccc-------cccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence              1000       0000112344456778999999999999999999887532    22456666653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.67  E-value=0.00015  Score=61.17  Aligned_cols=222  Identities=16%  Similarity=0.116  Sum_probs=133.8

Q ss_pred             EEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeeec---
Q psy11885         20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGT---   95 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~---   95 (327)
                      +..|.+..+.++++.-..+.|..|+..+++....... . ...+++. ++..++.+..+ .+.++|..++....+..   
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~-~-~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~   80 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP-G-PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLPD   80 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS-S-EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEET
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC-C-CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeeccC
Confidence            4788885566777666788999999999876543322 2 5566665 56677777654 55666988876543221   


Q ss_pred             ---CCccEEEEEEeCCCCEEEEEECC--------CeEEEEeCCCCceeeeeeC--CCcEEEEecCCCeEEE-EeCCCeEE
Q psy11885         96 ---HDQPIRAVEYSDEVNCILTGSWD--------TSVKMWDPRSSRCVGNYTQ--PDKVFTMSLCGEKFVV-GTAGRKVC  161 (327)
Q Consensus        96 ---h~~~V~~l~~~~~~~~l~sgs~d--------~~i~lwdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~d~~v~  161 (327)
                         .....+.+++.++|+..++....        +.|..++.. ++.......  ...-++++++++.+++ -+..+.|.
T Consensus        81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~  159 (246)
T PF08450_consen   81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIW  159 (246)
T ss_dssp             TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEE
T ss_pred             CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeE
Confidence               23457899999999977776544        457777766 443222221  1224566677766553 45556666


Q ss_pred             EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885        162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI  241 (327)
Q Consensus       162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  241 (327)
                      .+|+......       +..  ..                    + +.+....               .     .....+
T Consensus       160 ~~~~~~~~~~-------~~~--~~--------------------~-~~~~~~~---------------~-----g~pDG~  189 (246)
T PF08450_consen  160 RFDLDADGGE-------LSN--RR--------------------V-FIDFPGG---------------P-----GYPDGL  189 (246)
T ss_dssp             EEEEETTTCC-------EEE--EE--------------------E-EEE-SSS---------------S-----CEEEEE
T ss_pred             EEeccccccc-------eee--ee--------------------e-EEEcCCC---------------C-----cCCCcc
Confidence            6665422100       000  00                    0 0000000               0     014568


Q ss_pred             EEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEE-CCCCCEEEEEE
Q psy11885        242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF-SYDGNVLAIAC  296 (327)
Q Consensus       242 ~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f-spdg~~la~~~  296 (327)
                      ++..+|.+.++.-..+.|.++|.. |+.+..+......+++++| -|+.+.|...+
T Consensus       190 ~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  190 AVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             eEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            889999988887778999999976 8888777655457899999 57777776654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.66  E-value=2.8e-05  Score=77.06  Aligned_cols=265  Identities=16%  Similarity=0.186  Sum_probs=151.1

Q ss_pred             CCCeeEEEEecCCCcEEEEEECC-C--cEEEEECCCCe---EEEEec------CCCceeeEEE-eCCceEEEEecCCcEE
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWD-C--NVSLYDITNNN---LRLKYA------HSDPVLDCCF-QDAVHSFSGGLDCTLK   81 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d-~--~i~iwd~~~~~---~~~~~~------h~~~v~~~~~-~~~~~~~sgs~Dg~i~   81 (327)
                      ...+...+|.+..+..+++.+.. .  .|.+.....+.   ....+.      ..+.|.++.| .+...++.+..+|.|-
T Consensus        21 ~~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~  100 (928)
T PF04762_consen   21 DLPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDII  100 (928)
T ss_pred             ccccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEE
Confidence            45788899998766655554433 2  34444443322   122221      2356778876 6788888888899999


Q ss_pred             EE----EcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCC
Q psy11885         82 MF----DFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAG  157 (327)
Q Consensus        82 vw----d~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  157 (327)
                      +.    +.........+.-+..|.+.+||||...|+..+.++++-+-+ ++.+++.+......    .+.....++.+++
T Consensus       101 ~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~----~~~~~~~VsVGWG  175 (928)
T PF04762_consen  101 LVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSD----DFGESKHVSVGWG  175 (928)
T ss_pred             EEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCcc----ccCCCceeeeccC
Confidence            99    655555556666778899999999999999999999988775 44555444322110    0011123333322


Q ss_pred             CeEEEEECCCCccce-eeec--------cc--ceeeeEEeEEeeCCCceEEEee---cC-eEEEEEccCCcccccceeee
Q psy11885        158 RKVCIWDLRNMGYIM-QRRE--------SS--LKFQTRCIKCFPNKQGYVLSSI---EG-RAAVEYLDTGPEMQKMKYAF  222 (327)
Q Consensus       158 ~~v~iwD~~~~~~~~-~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~---~~-~~~i~~~~~~~~~~~~~~~~  222 (327)
                      .+=.-|--+.++..- +.+.        ..  .......+.+-.++..+++++.   .+ ...++.|+..........  
T Consensus       176 kKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE--  253 (928)
T PF04762_consen  176 KKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSE--  253 (928)
T ss_pred             cccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccc--
Confidence            211111100000000 0000        00  1112234556667777888776   34 455666665422111000  


Q ss_pred             eeeeeccCCeeeEEEeeEEEEecCCCeEEEecC---CCeEEEEeCCCceeeeec----CcCCcceEEEEECCCCCEEEEE
Q psy11885        223 KCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS---DGYVNIWDGFNKKRLCQF----HRYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       223 ~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~---dg~i~iWd~~~~~~~~~~----~~~~~~v~~l~fspdg~~la~~  295 (327)
                           ...+++     .+++|.|.|+.+|+.-.   ...|.+|. ++|.+-..|    ...+..|..|+||+|+..||.-
T Consensus       254 -----~v~gLe-----~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~  322 (928)
T PF04762_consen  254 -----PVDGLE-----GALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVW  322 (928)
T ss_pred             -----cCCCcc-----CCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEE
Confidence                 112222     37899999999998754   34677887 344333222    2345579999999999999987


Q ss_pred             Ec
Q psy11885        296 CS  297 (327)
Q Consensus       296 ~~  297 (327)
                      ..
T Consensus       323 ~~  324 (928)
T PF04762_consen  323 LE  324 (928)
T ss_pred             ec
Confidence            54

>KOG4190|consensus

Probab=98.64  E-value=1.5e-07  Score=83.74  Aligned_cols=156  Identities=23%  Similarity=0.287  Sum_probs=105.0

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-------EEEEe-cCCCceeeEEEe-CCceEEEEecCCcEEEE
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-------LRLKY-AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~-~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vw   83 (327)
                      .|.+.|++++--.+. .-+++++.|++|++|.+...-       +...+ .|+++|.++.|- +...++|+  |+.|.+|
T Consensus       733 GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW  809 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW  809 (1034)
T ss_pred             CcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence            355667766544433 457889999999999986421       23333 599999999985 44455555  9999999


Q ss_pred             EcCCCcee--ee--ecC--CccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-----C---CcEEEEecCCC
Q psy11885         84 DFNTQTET--VI--GTH--DQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-----P---DKVFTMSLCGE  149 (327)
Q Consensus        84 d~~~~~~~--~~--~~h--~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-----~---~~~~~~~~~~~  149 (327)
                      |---++..  ..  ..|  .+.|.++.--+..-.++.++...+|+++|.+..+...++..     +   ...+++.+.|+
T Consensus       810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN  889 (1034)
T KOG4190|consen  810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGN  889 (1034)
T ss_pred             cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcc
Confidence            96544321  11  122  23455554222222334447899999999998876655432     2   23567778899


Q ss_pred             eEEEEeCCCeEEEEECCCCccc
Q psy11885        150 KFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus       150 ~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      .++++-.+|.+.+.|.|+++.+
T Consensus       890 ~lAa~LSnGci~~LDaR~G~vI  911 (1034)
T KOG4190|consen  890 KLAAALSNGCIAILDARNGKVI  911 (1034)
T ss_pred             hhhHHhcCCcEEEEecCCCcee
Confidence            9999999999999999998744

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.62  E-value=4.1e-05  Score=75.93  Aligned_cols=284  Identities=18%  Similarity=0.220  Sum_probs=146.2

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECC----------C---C--eEEE--------Ee-------------c
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDIT----------N---N--NLRL--------KY-------------A   55 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~----------~---~--~~~~--------~~-------------~   55 (327)
                      ..-+.+|.|++|||| +++|+....++++.+-...          .   +  +...        .+             .
T Consensus       117 G~vd~GI~a~~WSPD-~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~  195 (928)
T PF04762_consen  117 GSVDSGILAASWSPD-EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRD  195 (928)
T ss_pred             EEEcCcEEEEEECCC-cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccC
Confidence            345679999999996 5777777777777665421          0   0  0000        00             0


Q ss_pred             ------------CCCceeeEEE-eCCceEEEEec---C---CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEE
Q psy11885         56 ------------HSDPVLDCCF-QDAVHSFSGGL---D---CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGS  116 (327)
Q Consensus        56 ------------h~~~v~~~~~-~~~~~~~sgs~---D---g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs  116 (327)
                                  +.+.-..++| -||.+++..+.   .   ..+|+|+-+.........-.+--.+|+|.|.|++|++..
T Consensus       196 p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q  275 (928)
T PF04762_consen  196 PTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQ  275 (928)
T ss_pred             CCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence                        1112234456 37777775554   2   478999866321111111222234689999999999876


Q ss_pred             C---CCeEEEEeCCCCceeeeeeCC-----CcE--EEEecCCCeEEEEeCCCeEEEEECCCCcc-ceeeecccceeeeEE
Q psy11885        117 W---DTSVKMWDPRSSRCVGNYTQP-----DKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGY-IMQRRESSLKFQTRC  185 (327)
Q Consensus       117 ~---d~~i~lwdl~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~-~~~~~~~~~~~~~~~  185 (327)
                      .   ...|..|. +.|.....|..+     ..+  +.++.+++.|++...|. |.+|-+.+..- .++............
T Consensus       276 ~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~  353 (928)
T PF04762_consen  276 RLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF  353 (928)
T ss_pred             EcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence            5   34455554 455544444332     233  44556677788876555 99998877541 111111010111122


Q ss_pred             eEEeeCCCc-eEEEeecCeEEEEEc--cC--Cccc----ccceeeeeeeee--------------ccCCeeeEEEeeEEE
Q psy11885        186 IKCFPNKQG-YVLSSIEGRAAVEYL--DT--GPEM----QKMKYAFKCHRI--------------KEDGIEKIYPVNAIS  242 (327)
Q Consensus       186 ~~~~~~~~~-~~~~~~~~~~~i~~~--~~--~~~~----~~~~~~~~~h~~--------------~~~~~~~~~~v~~v~  242 (327)
                      +.++|.... +.+.+.++......|  +.  ++..    ........+...              ....+.--.+|++++
T Consensus       354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~va  433 (928)
T PF04762_consen  354 VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVA  433 (928)
T ss_pred             eEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEE
Confidence            455554332 223333233322221  11  1000    000000010000              001111123689999


Q ss_pred             EecCCCeEEEecCCCeEEEEeCCCce--------eeeecC----------cCCcceEEEEECCCCCEEEEEEcc
Q psy11885        243 FHQEYNTFATGGSDGYVNIWDGFNKK--------RLCQFH----------RYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       243 ~spd~~~lasgs~dg~i~iWd~~~~~--------~~~~~~----------~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      |++++..+|+-..||+|.+|......        ....+.          .....+..++|-.+...++.....
T Consensus       434 f~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (928)
T PF04762_consen  434 FSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD  507 (928)
T ss_pred             EeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence            99999889999999999998743321        111111          112346788888877777666543

>KOG0882|consensus

Probab=98.62  E-value=1.1e-06  Score=76.48  Aligned_cols=241  Identities=16%  Similarity=0.078  Sum_probs=147.5

Q ss_pred             ecCCCceeeEEEeCCceEEEEecCCcEEEEEcCC-Cce---eeeecCCccEEEEEEeCCCCEEEEEEC-CCeEEEEeCCC
Q psy11885         54 YAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT-QTE---TVIGTHDQPIRAVEYSDEVNCILTGSW-DTSVKMWDPRS  128 (327)
Q Consensus        54 ~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~-~~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~-d~~i~lwdl~~  128 (327)
                      +.|.+-|..+.-.....+.+++.||.++.|--.. ...   ..+..|...|.+++.+-++-++.|... |..++++|++.
T Consensus         6 ymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    6 YMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             hcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            4577777666656788999999999999996432 111   124568888999999999999999777 99999999987


Q ss_pred             Cceeeeee---CCCcEEEEecCCC---eEEEE-eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeec
Q psy11885        129 SRCVGNYT---QPDKVFTMSLCGE---KFVVG-TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE  201 (327)
Q Consensus       129 ~~~~~~~~---~~~~~~~~~~~~~---~~~~~-~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (327)
                      -..+.-+.   .|..+-.+...|+   .++++ -.++.+.++|-+............+..+..++..++.++..+.....
T Consensus        86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence            54432221   2332222222332   23333 35778999998755422222222223345677777777766665555


Q ss_pred             CeEEEEEccCCccccc----ceeeeeeeeeccCCee-eEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC--
Q psy11885        202 GRAAVEYLDTGPEMQK----MKYAFKCHRIKEDGIE-KIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH--  274 (327)
Q Consensus       202 ~~~~i~~~~~~~~~~~----~~~~~~~h~~~~~~~~-~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~--  274 (327)
                      |.+.  +|......+.    +.+.++ |.....+.. .-....++.|+|++..+++-+.|..|++++..+++.++.+.  
T Consensus       166 gmVE--yWs~e~~~qfPr~~l~~~~K-~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~  242 (558)
T KOG0882|consen  166 GMVE--YWSAEGPFQFPRTNLNFELK-HETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV  242 (558)
T ss_pred             ceeE--eecCCCcccCcccccccccc-ccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence            5544  4543322111    111111 100000000 01135689999999999999999999999988776544321  


Q ss_pred             ------------------------------cCCc-ceEEEEECCCCCEEEEEEc
Q psy11885        275 ------------------------------RYDT-GITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       275 ------------------------------~~~~-~v~~l~fspdg~~la~~~~  297 (327)
                                                    .+.. .-+.+.|...|++|..|+-
T Consensus       243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~  296 (558)
T KOG0882|consen  243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI  296 (558)
T ss_pred             chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc
Confidence                                          1222 2356789899999988853

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.60  E-value=4e-05  Score=69.66  Aligned_cols=139  Identities=12%  Similarity=0.002  Sum_probs=86.6

Q ss_pred             CeeEEEEecCCCcEEEEEECC---CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecC--CcEEEEEcCCCc
Q psy11885         17 GITAVKFAPNSNQFLLASSWD---CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLD--CTLKMFDFNTQT   89 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~D--g~i~vwd~~~~~   89 (327)
                      .+..-+|+|+++..++..+.+   ..|.++|+.+++........+......|+ ++..++ +.+.+  ..|.++|+.++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            567899999765445544433   46899999988866655555556666785 676665 44444  456677877776


Q ss_pred             eeeeecCCccEEEEEEeCCCCEEEEEEC-CC--eEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEe
Q psy11885         90 ETVIGTHDQPIRAVEYSDEVNCILTGSW-DT--SVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGT  155 (327)
Q Consensus        90 ~~~~~~h~~~V~~l~~~~~~~~l~sgs~-d~--~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (327)
                      ...+..+........|+|||+.|+-.+. .+  .|.+.|+.+++..+..........++++|+.++...
T Consensus       269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSS  337 (419)
T ss_pred             EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEE
Confidence            5555444332345579999987765553 33  577778877665332222112246777787766554

>KOG3914|consensus

Probab=98.59  E-value=2.7e-07  Score=78.99  Aligned_cols=100  Identities=15%  Similarity=0.278  Sum_probs=77.0

Q ss_pred             CCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc--eeeeecCCccEEEEEEeCCCCEEE
Q psy11885         37 DCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCIL  113 (327)
Q Consensus        37 d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~  113 (327)
                      ...+.+|....+......+|-.-++.++++ ++..++++..|..||+=.....-  ..+..+|+..|..++.-++ ..|+
T Consensus       131 ~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~Ll  209 (390)
T KOG3914|consen  131 VYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLL  209 (390)
T ss_pred             ceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceee
Confidence            345566665556566667787788899995 78899999999999996554321  2345689999999998654 5699


Q ss_pred             EEECCCeEEEEeCCCCceeeeeeC
Q psy11885        114 TGSWDTSVKMWDPRSSRCVGNYTQ  137 (327)
Q Consensus       114 sgs~d~~i~lwdl~~~~~~~~~~~  137 (327)
                      |||-|++||+||+++++++.++..
T Consensus       210 S~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  210 SGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             ecCCCCcEEEEecccCCcccccch
Confidence            999999999999999998866543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.59  E-value=3.8e-06  Score=69.97  Aligned_cols=263  Identities=15%  Similarity=0.167  Sum_probs=146.0

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEE-----EecCC------------CceeeEEEe---CCceEE
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRL-----KYAHS------------DPVLDCCFQ---DAVHSF   72 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~-----~~~h~------------~~v~~~~~~---~~~~~~   72 (327)
                      ..+-|+++.|... +.||++|...|.|.++..+... +..     +..|.            ..|..+.|.   ...+.+
T Consensus        25 ead~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          25 EADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             ccceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            4468999999984 5799999999999999876543 111     11222            245666663   234555


Q ss_pred             EEecCCcEEEEEcCCCcee----------------------------ee----------------ecCCccEEEEEEeCC
Q psy11885         73 SGGLDCTLKMFDFNTQTET----------------------------VI----------------GTHDQPIRAVEYSDE  108 (327)
Q Consensus        73 sgs~Dg~i~vwd~~~~~~~----------------------------~~----------------~~h~~~V~~l~~~~~  108 (327)
                      -.+.|.+|++|.+-....+                            .+                ..|..-|+++.+..|
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            5556999999976322000                            00                124445667777777


Q ss_pred             CCEEEEEECCCeEEEEeCCCCc-eeeeeeC-CC-------cEEE--EecC-CCeEEEEeCCCeEEEEECCCCccceeeec
Q psy11885        109 VNCILTGSWDTSVKMWDPRSSR-CVGNYTQ-PD-------KVFT--MSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRRE  176 (327)
Q Consensus       109 ~~~l~sgs~d~~i~lwdl~~~~-~~~~~~~-~~-------~~~~--~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~~  176 (327)
                      .+.++++ .|-+|.+|++.--. +...... |.       .+.+  +++- .+.+.-.+..|.|++-|+|+...+ .   
T Consensus       184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc-d---  258 (460)
T COG5170         184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC-D---  258 (460)
T ss_pred             hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc-c---
Confidence            6666664 45778888875321 1111110 10       0111  1211 233555566777777777643210 0   


Q ss_pred             ccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCC
Q psy11885        177 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD  256 (327)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~d  256 (327)
                                  ++. .. ..-..++.                    .|...   .+.++.|..+.|+|.|+++++-+ -
T Consensus       259 ------------n~~-kl-fe~~~D~v--------------------~~~ff---~eivsSISD~kFs~ngryIlsRd-y  300 (460)
T COG5170         259 ------------NSK-KL-FELTIDGV--------------------DVDFF---EEIVSSISDFKFSDNGRYILSRD-Y  300 (460)
T ss_pred             ------------Cch-hh-hhhccCcc--------------------cchhH---HHHhhhhcceEEcCCCcEEEEec-c
Confidence                        000 00 00000000                    00000   01234578899999999999774 3


Q ss_pred             CeEEEEeCCCc-eeeeecCcC-----------C-cce---EEEEECCCCCEEEEEEccccccCCCCCC-CCCCcEEEEEc
Q psy11885        257 GYVNIWDGFNK-KRLCQFHRY-----------D-TGI---TSLCFSYDGNVLAIACSYNYELETPPDP-IPPNNIFIRHV  319 (327)
Q Consensus       257 g~i~iWd~~~~-~~~~~~~~~-----------~-~~v---~~l~fspdg~~la~~~~~~~~~~~~~~~-~~~~~~~~~~~  319 (327)
                      -+|+|||.+.- .++.++.-|           + ..|   ..+.||-|.+.+.+|+..+.+-.+|-+. .+.++.+++-+
T Consensus       301 ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~D~g~vv~~  380 (460)
T COG5170         301 LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHVVNL  380 (460)
T ss_pred             ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCCCCcceEEEec
Confidence            78999997643 234433211           1 123   4589999999999887666666666444 66666666654


Q ss_pred             c
Q psy11885        320 T  320 (327)
Q Consensus       320 ~  320 (327)
                      -
T Consensus       381 a  381 (460)
T COG5170         381 A  381 (460)
T ss_pred             c
Confidence            3

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.57  E-value=3.3e-07  Score=53.25  Aligned_cols=35  Identities=26%  Similarity=0.594  Sum_probs=32.8

Q ss_pred             eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEe
Q psy11885         91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD  125 (327)
Q Consensus        91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwd  125 (327)
                      ..+.+|+.+|.+++|+|+++.|++++.|++|++||
T Consensus         5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            35678999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.57  E-value=1.2e-05  Score=80.92  Aligned_cols=152  Identities=16%  Similarity=0.212  Sum_probs=102.9

Q ss_pred             eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC---------------CCceeeEEEe-CCceEE-EEecCCcE
Q psy11885         18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH---------------SDPVLDCCFQ-DAVHSF-SGGLDCTL   80 (327)
Q Consensus        18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h---------------~~~v~~~~~~-~~~~~~-sgs~Dg~i   80 (327)
                      -..++|+|+++.++++.+.++.|++||..++......+.               -.....++++ ++..++ +-+.++.|
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            357999996666777777889999999988765432211               0123457774 566454 55667999


Q ss_pred             EEEEcCCCceeeee--------------cCC--------ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-
Q psy11885         81 KMFDFNTQTETVIG--------------THD--------QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-  137 (327)
Q Consensus        81 ~vwd~~~~~~~~~~--------------~h~--------~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-  137 (327)
                      ++||++++....+.              .++        .....++++++|+.+++-+.+++|++||..++........ 
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G  844 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG  844 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence            99998865432111              010        1235788999999888888999999999987765422110 


Q ss_pred             ---------------CCcEEEEecCCCeEEEEeCCCeEEEEECCCCc
Q psy11885        138 ---------------PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMG  169 (327)
Q Consensus       138 ---------------~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~  169 (327)
                                     ....++++.+|+.+++-+.++.|++||+++..
T Consensus       845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence                           11234666778777777889999999998764

>KOG0280|consensus

Probab=98.56  E-value=2.9e-06  Score=70.08  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=82.8

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCCCeEE---EEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCCCceee-
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR---LKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQTETV-   92 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~~~~-   92 (327)
                      .++.|++. +.-++++-.+|.+.+-+.....+.   ....|..+...+.|+  +.+.+++||.|+.+..||++...... 
T Consensus       125 lslD~~~~-~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  125 LSLDISTS-GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eEEEeecc-CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            46778874 455777777888885554444332   234688888888884  56788999999999999998433222 


Q ss_pred             --eecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCC-Cceee
Q psy11885         93 --IGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRS-SRCVG  133 (327)
Q Consensus        93 --~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~-~~~~~  133 (327)
                        ...|...|.++.-+| .+..+++|++|-.|++||.|+ ++++.
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF  248 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence              235788888887664 578999999999999999984 55543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.55  E-value=3.8e-05  Score=69.79  Aligned_cols=198  Identities=11%  Similarity=0.041  Sum_probs=111.6

Q ss_pred             cEEEEEcCCCceeeeecCCccEEEEEEeCCCCE-EEEEECC---CeEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEE
Q psy11885         79 TLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNC-ILTGSWD---TSVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFV  152 (327)
Q Consensus        79 ~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~sgs~d---~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~  152 (327)
                      .|.+-|.+......+... ..+..-.|+|||+. ++..+.+   ..|.++|+.+++.......+.  ....++++|..++
T Consensus       170 ~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la  248 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL  248 (419)
T ss_pred             eEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence            444445544444433332 36778999999985 6644443   568889998886544333332  2456788888766


Q ss_pred             EE-eCC--CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccc-cceeeeeeeee
Q psy11885        153 VG-TAG--RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQ-KMKYAFKCHRI  227 (327)
Q Consensus       153 ~~-~~d--~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~~~h~~  227 (327)
                      .. +.+  ..|.++|+.+.+.. +.  ...........++|+++.++..+. .+...|+.++...... ++..       
T Consensus       249 ~~~~~~g~~~Iy~~dl~~g~~~-~L--T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-------  318 (419)
T PRK04043        249 LTMAPKGQPDIYLYDTNTKTLT-QI--TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-------  318 (419)
T ss_pred             EEEccCCCcEEEEEECCCCcEE-Ec--ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-------
Confidence            54 333  46778888765421 11  111111122357788877766554 3434555554332111 1110       


Q ss_pred             ccCCeeeEEEeeEEEEecCCCeEEEecCC---------CeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        228 KEDGIEKIYPVNAISFHQEYNTFATGGSD---------GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       228 ~~~~~~~~~~v~~v~~spd~~~lasgs~d---------g~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                        .+      .....|||||+.|+-.+..         ..|.+.|+.++.. ..+... .......|||||+.|+....
T Consensus       319 --~g------~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        319 --HG------KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             --CC------CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEc
Confidence              00      0124899999998755433         2577778877653 334322 12235899999999998864

>KOG2695|consensus

Probab=98.51  E-value=4.3e-07  Score=76.46  Aligned_cols=150  Identities=13%  Similarity=0.188  Sum_probs=107.6

Q ss_pred             EEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc-----eeeee
Q psy11885         21 VKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT-----ETVIG   94 (327)
Q Consensus        21 i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~-----~~~~~   94 (327)
                      ++|+-+-..+-++.|.+..|-+-|+++|-...+ ..+..|.++.|. .++.++.|...|.|...|++.+.     +....
T Consensus       217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl  295 (425)
T KOG2695|consen  217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL  295 (425)
T ss_pred             hhhhhccceeeecccccceeEEEEeeccccccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence            355543223446667788888889988753322 234557777775 58889999999999999998652     12233


Q ss_pred             cCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCce---eeeeeCCCcEE-----EEecCCCeEEEEeCCCeEEEEEC
Q psy11885         95 THDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRC---VGNYTQPDKVF-----TMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        95 ~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      -|...|+++..-. ++++|++.+.+|+|.+||+|.-++   ++++..+....     .+......+++++.|--.|||.+
T Consensus       296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl  375 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL  375 (425)
T ss_pred             EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEec
Confidence            5888999987766 778999999999999999998777   77777654322     22333445778889999999999


Q ss_pred             CCCccc
Q psy11885        166 RNMGYI  171 (327)
Q Consensus       166 ~~~~~~  171 (327)
                      +.+..+
T Consensus       376 ~~ghLl  381 (425)
T KOG2695|consen  376 DSGHLL  381 (425)
T ss_pred             ccCcee
Confidence            876543

>KOG4547|consensus

Probab=98.51  E-value=6.1e-06  Score=74.14  Aligned_cols=136  Identities=18%  Similarity=0.229  Sum_probs=103.1

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEe---cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee-ecCCccEEEE
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKY---AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI-GTHDQPIRAV  103 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~---~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~-~~h~~~V~~l  103 (327)
                      ..++-|-..|.|.+|++..+++..+.   .|.++|.++.++ +...++|++.|+.+..|+.......+. ......+.++
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl  150 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL  150 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence            35666778899999999999976554   488899988874 667888999999999999877665443 3455678999


Q ss_pred             EEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-E--EEEecC-----CCeEEEE-eCCCeEEEEECC
Q psy11885        104 EYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-V--FTMSLC-----GEKFVVG-TAGRKVCIWDLR  166 (327)
Q Consensus       104 ~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-~--~~~~~~-----~~~~~~~-~~d~~v~iwD~~  166 (327)
                      +++||+..+++|+  +.|++||+++++.+..|+++.. +  +++...     |.+++++ ..++-+.+|=++
T Consensus       151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  151 CISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             EEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            9999999999988  5899999999999999987653 2  223222     5566554 344556677544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.49  E-value=7.5e-05  Score=61.84  Aligned_cols=102  Identities=13%  Similarity=0.212  Sum_probs=70.2

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-------CCCceeeEEEeC-------CceEEEEecCCcEEE
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-------HSDPVLDCCFQD-------AVHSFSGGLDCTLKM   82 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------h~~~v~~~~~~~-------~~~~~sgs~Dg~i~v   82 (327)
                      .=+-++|||| +.+||.+...|+|+++|+.+..+.....       -..+|..+.|.+       ...++.-..+|.++-
T Consensus        45 QWRkl~WSpD-~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   45 QWRKLAWSPD-CTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             hheEEEECCC-CcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            4478999995 5789989899999999998766543221       234666777732       226677777888888


Q ss_pred             EEcCCC--c---e-ee--eec-CCccEEEEEEeCCCCEEEEEECCC
Q psy11885         83 FDFNTQ--T---E-TV--IGT-HDQPIRAVEYSDEVNCILTGSWDT  119 (327)
Q Consensus        83 wd~~~~--~---~-~~--~~~-h~~~V~~l~~~~~~~~l~sgs~d~  119 (327)
                      +-+..+  +   . ..  +.. +...|.++.|+|..++|+.||...
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~  169 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ  169 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence            765321  1   1 11  222 356799999999999988887644

>KOG4190|consensus

Probab=98.47  E-value=1.7e-07  Score=83.50  Aligned_cols=175  Identities=19%  Similarity=0.287  Sum_probs=103.2

Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC-------CceeeeeeCCCc-EEEEecCCCeEEEEeCCCeEEEEE
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS-------SRCVGNYTQPDK-VFTMSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      +.+|...|+.++--.+.+.+++++.|++|++|.++.       ..|..+++.+.+ +-.+.+-.+.-.+++.|+-+.+||
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWD  810 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWD  810 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeec
Confidence            457888899887667778899999999999999863       235566655432 222333222234557799999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeC-CCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPN-KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      -=-+....+............+.+.++ ...++++.......+..+|.....-...+..+.      .......+.+++.
T Consensus       811 PFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn------a~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  811 PFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN------APGPNALTRAIAV  884 (1034)
T ss_pred             ccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc------CCCCchheeEEEe
Confidence            643332211111111112233444444 344454443334444445543321111111110      0011124678999


Q ss_pred             ecCCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885        244 HQEYNTFATGGSDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd~~~~~~~~~~  273 (327)
                      .|.|+.+|+|=.+|.|.+-|.++|+.+...
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence            999999999999999999999999877543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.46  E-value=0.00041  Score=61.82  Aligned_cols=276  Identities=16%  Similarity=0.168  Sum_probs=156.1

Q ss_pred             CCeeEEEEecCCCcEEEEEEC---------------CCcEEEEECCCCeEEEEec-CCCc--ee-eEEEe-CCceEEEEe
Q psy11885         16 DGITAVKFAPNSNQFLLASSW---------------DCNVSLYDITNNNLRLKYA-HSDP--VL-DCCFQ-DAVHSFSGG   75 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~---------------d~~i~iwd~~~~~~~~~~~-h~~~--v~-~~~~~-~~~~~~sgs   75 (327)
                      ..|.-+.|+|+ ++||.+=+.               ++.+.+||..+|.+...+. -..+  .. -+.|+ +..+++=- 
T Consensus        72 ~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-  149 (561)
T COG5354          72 PDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-  149 (561)
T ss_pred             CCceecccCcc-cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence            36888999995 578886443               2359999999999765543 2222  11 34564 44444322 


Q ss_pred             cCCcEEEEEcCCCceeeeecC---CccEEEEEEeCCC--CEEE-----EEECCCeEEEEeCCCCceeeee---eCCCcEE
Q psy11885         76 LDCTLKMFDFNTQTETVIGTH---DQPIRAVEYSDEV--NCIL-----TGSWDTSVKMWDPRSSRCVGNY---TQPDKVF  142 (327)
Q Consensus        76 ~Dg~i~vwd~~~~~~~~~~~h---~~~V~~l~~~~~~--~~l~-----sgs~d~~i~lwdl~~~~~~~~~---~~~~~~~  142 (327)
                      ....+.++++ +.......-+   ...|....++|.+  ..|+     ..+.++.+++|.+..+..+.+.   ...+..+
T Consensus       150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL  228 (561)
T COG5354         150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL  228 (561)
T ss_pred             ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence            2347888887 3322111111   2457778888864  2333     2466789999999876655432   2222334


Q ss_pred             EEecCCCeEEEEe-----------CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccC
Q psy11885        143 TMSLCGEKFVVGT-----------AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT  211 (327)
Q Consensus       143 ~~~~~~~~~~~~~-----------~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  211 (327)
                      -+...|+.+++-.           ....+.|++++.......   ..+..+.....+.|..+.+++.+.-....+..++.
T Consensus       229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~---~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE---KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL  305 (561)
T ss_pred             EEecCCceEEEEEEEeeecccceeccceEEEEeeccccccee---ccccccceeeeecccCCceeEEecccccceeeccc
Confidence            4455566544321           124577888764432111   12223344566778888877766544444444443


Q ss_pred             CcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCC---CeEEEEeCCCceeee-ecCcCCcceEEEEECC
Q psy11885        212 GPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD---GYVNIWDGFNKKRLC-QFHRYDTGITSLCFSY  287 (327)
Q Consensus       212 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~d---g~i~iWd~~~~~~~~-~~~~~~~~v~~l~fsp  287 (327)
                      ...   +.+.+..           .+=+.+.|+|.+++++.++.|   |.|.+||........ .+.+.  ...-+.|||
T Consensus       306 r~N---l~~~~Pe-----------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wsp  369 (561)
T COG5354         306 RGN---LRFYFPE-----------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSP  369 (561)
T ss_pred             ccc---eEEecCC-----------cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccC
Confidence            221   1111110           023568999999999998887   579999976644433 44333  234468999


Q ss_pred             CCCEEEEEEccccccCCCCCCCCCCcEEEEEcc
Q psy11885        288 DGNVLAIACSYNYELETPPDPIPPNNIFIRHVT  320 (327)
Q Consensus       288 dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (327)
                      ||+++-++..-  +..+     .+|.|=|-+|.
T Consensus       370 d~qF~~~~~ts--~k~~-----~Dn~i~l~~v~  395 (561)
T COG5354         370 DGQFYDTDTTS--EKLR-----VDNSIKLWDVY  395 (561)
T ss_pred             CceEEEecCCC--cccc-----cCcceEEEEec
Confidence            99998776421  1122     45555555553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.44  E-value=0.0002  Score=63.32  Aligned_cols=106  Identities=15%  Similarity=0.072  Sum_probs=80.0

Q ss_pred             EecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCC-cEEEEEcCCCceeeeecCCccE
Q psy11885         23 FAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDC-TLKMFDFNTQTETVIGTHDQPI  100 (327)
Q Consensus        23 fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg-~i~vwd~~~~~~~~~~~h~~~V  100 (327)
                      |++.++.+++..| -|.+-|.+...+-.. ..+|.+.|.-..+. ++.-.+-|..|| .+-++|.+++..+.+...-+.|
T Consensus       327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~i-qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I  404 (668)
T COG4946         327 FAVVNGDYIALVS-RGKAFIMRPWDGYSI-QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNI  404 (668)
T ss_pred             hccCCCcEEEEEe-cCcEEEECCCCCeeE-EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccce
Confidence            5555566777777 466777776665533 34566677776663 666778888898 8999999998877777767889


Q ss_pred             EEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885        101 RAVEYSDEVNCILTGSWDTSVKMWDPRSSR  130 (327)
Q Consensus       101 ~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~  130 (327)
                      -++..+++|+.++.+.....|.+.|+.+++
T Consensus       405 ~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         405 EAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             EEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            999999999999988887888888876653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.40  E-value=0.00023  Score=64.57  Aligned_cols=224  Identities=12%  Similarity=0.032  Sum_probs=122.6

Q ss_pred             EEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecCCccE------EEE
Q psy11885         30 FLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPI------RAV  103 (327)
Q Consensus        30 ~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V------~~l  103 (327)
                      .++.++.++.+.-+|.++|++.-.......+.+.-...+..++.+..++.+..+|.++++.........+.      .+-
T Consensus       122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP  201 (394)
T PRK11138        122 KVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP  201 (394)
T ss_pred             EEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC
Confidence            46667789999999999998654433233332211112456777778999999999888764322211111      011


Q ss_pred             EEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc--------E----EEEecCCCeEEEEeCCCeEEEEECCCCccc
Q psy11885        104 EYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK--------V----FTMSLCGEKFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus       104 ~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      ...  +..++.++.++.+..+|.++++.++.......        .    ..-...++.+++++.++.+.-+|.++++..
T Consensus       202 ~v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~  279 (394)
T PRK11138        202 ATA--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV  279 (394)
T ss_pred             EEE--CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence            111  24577788899999999999987766432110        0    000113567777888999999999887643


Q ss_pred             eeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE
Q psy11885        172 MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA  251 (327)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la  251 (327)
                      -.......    ..  ....+..+.+.+.++.........+..    .+...  ...  . .   ...+...  .+..|.
T Consensus       280 W~~~~~~~----~~--~~~~~~~vy~~~~~g~l~ald~~tG~~----~W~~~--~~~--~-~---~~~sp~v--~~g~l~  339 (394)
T PRK11138        280 WKREYGSV----ND--FAVDGGRIYLVDQNDRVYALDTRGGVE----LWSQS--DLL--H-R---LLTAPVL--YNGYLV  339 (394)
T ss_pred             EeecCCCc----cC--cEEECCEEEEEcCCCeEEEEECCCCcE----EEccc--ccC--C-C---cccCCEE--ECCEEE
Confidence            22211110    00  111223334444444433322222211    11000  000  0 0   0111111  245778


Q ss_pred             EecCCCeEEEEeCCCceeeeecCc
Q psy11885        252 TGGSDGYVNIWDGFNKKRLCQFHR  275 (327)
Q Consensus       252 sgs~dg~i~iWd~~~~~~~~~~~~  275 (327)
                      .++.||.+...|..+|+.+.+.+-
T Consensus       340 v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        340 VGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             EEeCCCEEEEEECCCCCEEEEEEc
Confidence            889999999999999988776643

>KOG1912|consensus

Probab=98.39  E-value=9e-05  Score=69.10  Aligned_cols=79  Identities=18%  Similarity=0.257  Sum_probs=57.1

Q ss_pred             CCCCCCeeEEEEecCC-----------CcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe---C-C-ceEEEE
Q psy11885         12 SPPEDGITAVKFAPNS-----------NQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ---D-A-VHSFSG   74 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~-----------~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~---~-~-~~~~sg   74 (327)
                      +.|...|+.++|.|..           .-++|++...|.|.+||...+..+... .|.+++..++|-   + . ..++.-
T Consensus        52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI  131 (1062)
T KOG1912|consen   52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI  131 (1062)
T ss_pred             ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEe
Confidence            5567899999999731           235677777899999999888755444 567889999982   2 2 345555


Q ss_pred             ecCCcEEEEEcCCCce
Q psy11885         75 GLDCTLKMFDFNTQTE   90 (327)
Q Consensus        75 s~Dg~i~vwd~~~~~~   90 (327)
                      ....++.+|+..++..
T Consensus       132 h~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen  132 HGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             cCCcEEEEEEccCCce
Confidence            5567899998877654

>KOG1832|consensus

Probab=98.39  E-value=5.9e-07  Score=84.21  Aligned_cols=152  Identities=13%  Similarity=0.229  Sum_probs=97.1

Q ss_pred             eecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEE-ecC-CcEEEE
Q psy11885          8 YSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG-GLD-CTLKMF   83 (327)
Q Consensus         8 ~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sg-s~D-g~i~vw   83 (327)
                      ++...-+...-||++|+- +.+.|+.|+..|.|+++++.+|.. ...-.|+.+|+-+-=+ ++..+++. ++. --.-+|
T Consensus      1094 w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             chhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            334444567899999998 567999999999999999999984 4445688888766533 56655533 333 356789


Q ss_pred             EcCCCceeeeecCCc-cEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-------CcEEEEecCCCeEEEEe
Q psy11885         84 DFNTQTETVIGTHDQ-PIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-------DKVFTMSLCGEKFVVGT  155 (327)
Q Consensus        84 d~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  155 (327)
                      ++.+..   -..|+. .-.++.|+...+.-+.|.......+||++++..+.++..+       .....++|+.+.++   
T Consensus      1173 ~~~s~~---~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1173 DASSTG---GPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred             cccccc---CccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---
Confidence            876521   112321 2356778765544455555577899999998877664321       22344555554443   


Q ss_pred             CCCeEEEEECCCC
Q psy11885        156 AGRKVCIWDLRNM  168 (327)
Q Consensus       156 ~d~~v~iwD~~~~  168 (327)
                      .||  -+||.|..
T Consensus      1247 ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1247 NDG--VLWDVRIP 1257 (1516)
T ss_pred             eCc--eeeeeccH
Confidence            222  46887753

>KOG1409|consensus

Probab=98.36  E-value=3.9e-05  Score=64.92  Aligned_cols=243  Identities=15%  Similarity=0.206  Sum_probs=134.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEE-CCCCeEEEEecC--CCceeeEEEe-CCceEEEEecCCcEEEEEcCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYD-ITNNNLRLKYAH--SDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h--~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      +.+.+.|++...-|. ..-+++.+.|.++|||- .+.++.-....|  ..++.++.+. +...++.|-..|++.-+.+..
T Consensus        21 eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~se   99 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSE   99 (404)
T ss_pred             cCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhh
Confidence            344566777777773 45799999999999995 344553333334  3456777774 666777787788888776532


Q ss_pred             --Cce---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEE
Q psy11885         88 --QTE---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCI  162 (327)
Q Consensus        88 --~~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  162 (327)
                        ++.   .....|...|..+-|+....++++.+.|..+.---.+.+.-+..+.......+..++-....+|-..+.|..
T Consensus       100 dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~  179 (404)
T KOG1409|consen  100 DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITM  179 (404)
T ss_pred             hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEE
Confidence              121   223468899999999988899999999987643333344333322111000000000002233333444333


Q ss_pred             EECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        163 WDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       163 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                      --+...................+..+.+....+..+..+..+.+|..-..+.   ..++...|..         .|..+.
T Consensus       180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g---~~~el~gh~~---------kV~~l~  247 (404)
T KOG1409|consen  180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG---TAYELQGHND---------KVQALS  247 (404)
T ss_pred             EEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc---eeeeeccchh---------hhhhhh
Confidence            2221111111111122223345566666555555566666666644432221   2222222221         244444


Q ss_pred             EecCCCeEEEecCCCeEEEEeCCCc
Q psy11885        243 FHQEYNTFATGGSDGYVNIWDGFNK  267 (327)
Q Consensus       243 ~spd~~~lasgs~dg~i~iWd~~~~  267 (327)
                      .-+--+.|.++++||.|.+|++...
T Consensus       248 ~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  248 YAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhheeeeeccCCCeEEEEeccce
Confidence            4455678999999999999997643

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.35  E-value=1.4e-06  Score=50.59  Aligned_cols=32  Identities=22%  Similarity=0.511  Sum_probs=28.9

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYD   44 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd   44 (327)
                      ..|++.|++|+|+|+ +.+|++++.|++|++||
T Consensus         8 ~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence            447789999999995 68999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2041|consensus

Probab=98.34  E-value=1.2e-05  Score=73.96  Aligned_cols=229  Identities=14%  Similarity=0.169  Sum_probs=130.9

Q ss_pred             ceeeEEEe-CCceEEEEecCCcEEEEEcCCCc----------------eeeeecCCccEEEEEEeCCCCEEEEEECCCeE
Q psy11885         59 PVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT----------------ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSV  121 (327)
Q Consensus        59 ~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~----------------~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i  121 (327)
                      ...++.|. ...+++.||.||.+++..+.+..                -+.+.+|+..|..+.|..+.+.|-|...+|-|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence            45677885 67799999999999999776431                02357899999999999999999999999999


Q ss_pred             EEEeCCCCceeeee-eCC--CcE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeeccccee-eeEEeEEeeCCCce
Q psy11885        122 KMWDPRSSRCVGNY-TQP--DKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKF-QTRCIKCFPNKQGY  195 (327)
Q Consensus       122 ~lwdl~~~~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  195 (327)
                      -+|-+-.+....+. ...  ..+  +++..+|..+.....||.|-+=.+.....    ....+.. +...+.++++....
T Consensus        96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI----wgKeLkg~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI----WGKELKGQLLAHVLWSEDLEQA  171 (1189)
T ss_pred             EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee----cchhcchheccceeecccHHHH
Confidence            99998776543332 111  223  34455688888888888775544432211    0111111 11223334443333


Q ss_pred             EEEeecCeEEEEEccCCcccccceeeeeeeee-c-c-CCeeeEEEeeEEEE--------ecCCCeEEEecCCCeEEEEeC
Q psy11885        196 VLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI-K-E-DGIEKIYPVNAISF--------HQEYNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       196 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~-~-~-~~~~~~~~v~~v~~--------spd~~~lasgs~dg~i~iWd~  264 (327)
                      +.+-..|...+  +|..... ..+....+-.. . . .+.++  .+..+.|        -||...||++-.+|.+.|-..
T Consensus       172 Lf~~ange~hl--ydnqgnF-~~Kl~~~c~Vn~tg~~s~~~~--kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~  246 (1189)
T KOG2041|consen  172 LFKKANGETHL--YDNQGNF-ERKLEKDCEVNGTGIFSNFPT--KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS  246 (1189)
T ss_pred             HhhhcCCcEEE--ecccccH-HHhhhhceEEeeeeeecCCCc--cccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence            33333333333  2211110 00000000000 0 0 00000  0122222        368889999999999988764


Q ss_pred             CCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        265 FNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       265 ~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      .+-.....+.-. -.+....|+|+|.+||+++.
T Consensus       247 eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~  278 (1189)
T KOG2041|consen  247 ENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCGN  278 (1189)
T ss_pred             cCCCCCeEEecc-cEeecceecCCCcEEEEccC
Confidence            443333233211 24778999999999998854

>KOG4532|consensus

Probab=98.33  E-value=2.6e-05  Score=63.88  Aligned_cols=196  Identities=17%  Similarity=0.071  Sum_probs=116.5

Q ss_pred             ECCCcEEEEECCCCe--EEEEecCCCceeeEEEe------CCceEEEEecCCcEEEEEcCCCcee--eeecCCccEEEE-
Q psy11885         35 SWDCNVSLYDITNNN--LRLKYAHSDPVLDCCFQ------DAVHSFSGGLDCTLKMFDFNTQTET--VIGTHDQPIRAV-  103 (327)
Q Consensus        35 ~~d~~i~iwd~~~~~--~~~~~~h~~~v~~~~~~------~~~~~~sgs~Dg~i~vwd~~~~~~~--~~~~h~~~V~~l-  103 (327)
                      +....+-+|+..+..  ....+      ..+.|.      +-.+++.||.-|...+|...++...  ....|...|.-+ 
T Consensus        49 ~~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~  122 (344)
T KOG4532|consen   49 SKTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK  122 (344)
T ss_pred             cceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence            344567888876654  22222      123331      3457889999999999998876542  222343333221 


Q ss_pred             EEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccce
Q psy11885        104 EYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK  180 (327)
Q Consensus       104 ~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~  180 (327)
                      .+....-.+..++.|.++++.++..+..-.....+   .....++.++..+++.+..+.|-+|.+......         
T Consensus       123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey---------  193 (344)
T KOG4532|consen  123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY---------  193 (344)
T ss_pred             hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce---------
Confidence            12223345778888999988887654332222222   223456667778888888888888876532110         


Q ss_pred             eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEE
Q psy11885        181 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN  260 (327)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~  260 (327)
                       ..+                     ++..++..           |            --+.+|+.....||++++||++-
T Consensus       194 -~~~---------------------~~~a~t~D-----------~------------gF~~S~s~~~~~FAv~~Qdg~~~  228 (344)
T KOG4532|consen  194 -IEN---------------------IYEAPTSD-----------H------------GFYNSFSENDLQFAVVFQDGTCA  228 (344)
T ss_pred             -eee---------------------eEecccCC-----------C------------ceeeeeccCcceEEEEecCCcEE
Confidence             000                     00011100           1            12467888888999999999999


Q ss_pred             EEeCCCceeeee-----cCcCCcceEEEEECCCCC
Q psy11885        261 IWDGFNKKRLCQ-----FHRYDTGITSLCFSYDGN  290 (327)
Q Consensus       261 iWd~~~~~~~~~-----~~~~~~~v~~l~fspdg~  290 (327)
                      |||++....+..     -..|.+.+..+.|||-|.
T Consensus       229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             EEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence            999887543321     234667899999998554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.29  E-value=1.2e-05  Score=67.11  Aligned_cols=240  Identities=17%  Similarity=0.221  Sum_probs=130.1

Q ss_pred             CCceeeEEE-eCCceEEEEecCCcEEEEEcCCCc-e--e---eeecCC------------ccEEEEEEeCCC--CEEEEE
Q psy11885         57 SDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQT-E--T---VIGTHD------------QPIRAVEYSDEV--NCILTG  115 (327)
Q Consensus        57 ~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~-~--~---~~~~h~------------~~V~~l~~~~~~--~~l~sg  115 (327)
                      .+.|+++-| ..|.++++|...|.|.++.-+... +  +   .++.|+            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            345777777 467899999888999999765433 1  1   134443            357888887654  457788


Q ss_pred             ECCCeEEEEeCCCCc--eeeeee------CC--CcEEEEe------cC-CCeEEEEeCCCeEEEEECCCCccceeeeccc
Q psy11885        116 SWDTSVKMWDPRSSR--CVGNYT------QP--DKVFTMS------LC-GEKFVVGTAGRKVCIWDLRNMGYIMQRRESS  178 (327)
Q Consensus       116 s~d~~i~lwdl~~~~--~~~~~~------~~--~~~~~~~------~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~  178 (327)
                      +.|.+|++|.+....  .+.+-.      .+  +...+..      .+ .+.++++        ..-       +.....
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa--------~p~-------rvyaNa  170 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA--------KPC-------RVYANA  170 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEe--------ccc-------eecccc
Confidence            899999999987642  211110      00  0000000      00 0111111        110       111223


Q ss_pred             ceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC-CeEEEecCCC
Q psy11885        179 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDG  257 (327)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~-~~lasgs~dg  257 (327)
                      ++.+.+.+.++.+.+.+ +++.+-.+.+|..+..... -....++.|.+.+-    ..-|++..|||.- ..|.-.+..|
T Consensus       171 H~yhiNSiS~NsD~et~-lSaDdLrINLWnl~i~D~s-FnIVDiKP~nmeeL----teVItSaeFhp~~cn~fmYSsSkG  244 (460)
T COG5170         171 HPYHINSISFNSDKETL-LSADDLRINLWNLEIIDGS-FNIVDIKPHNMEEL----TEVITSAEFHPEMCNVFMYSSSKG  244 (460)
T ss_pred             ceeEeeeeeecCchhee-eeccceeeeeccccccCCc-eEEEeccCccHHHH----HHHHhhcccCHhHcceEEEecCCC
Confidence            44556677776665443 3444444444333322211 11112333433221    1136778899864 4566677789


Q ss_pred             eEEEEeCCCce------eee--ec--------CcCCcceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEEEc
Q psy11885        258 YVNIWDGFNKK------RLC--QF--------HRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHV  319 (327)
Q Consensus       258 ~i~iWd~~~~~------~~~--~~--------~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (327)
                      +|++-|++...      .+.  ++        ..--+.|..+.|||+|+|+++-  +-+.+..|-....++.|+-+++
T Consensus       245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR--dyltvkiwDvnm~k~pikTi~~  320 (460)
T COG5170         245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR--DYLTVKIWDVNMAKNPIKTIPM  320 (460)
T ss_pred             cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe--ccceEEEEecccccCCceeech
Confidence            99999987321      111  11        1122457889999999999754  3444555555566677766654

>KOG1275|consensus

Probab=98.28  E-value=2.3e-05  Score=74.12  Aligned_cols=179  Identities=18%  Similarity=0.278  Sum_probs=113.8

Q ss_pred             CceEEEEecCCcEEEEEcCCCceeeeecCC-ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEEe
Q psy11885         68 AVHSFSGGLDCTLKMFDFNTQTETVIGTHD-QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTMS  145 (327)
Q Consensus        68 ~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~~  145 (327)
                      +..++-|+....+...|+++........-. +.|.-++  .+++.+..|...|+|-+-|+++.+.++++..+ +.+..++
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            345566777777888888776654333222 2344444  35688999999999999999999999998865 4567788


Q ss_pred             cCCCeEEEEeC---------CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEcc---CC
Q psy11885        146 LCGEKFVVGTA---------GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLD---TG  212 (327)
Q Consensus       146 ~~~~~~~~~~~---------d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~---~~  212 (327)
                      ..|+.+++++.         |.-|+|||+|+++.+...   ..+..+.-++++|... .+++.+..|....  .+   .+
T Consensus       225 v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI---~~~~~P~flrf~Psl~t~~~V~S~sGq~q~--vd~~~ls  299 (1118)
T KOG1275|consen  225 VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI---QFPYGPQFLRFHPSLTTRLAVTSQSGQFQF--VDTATLS  299 (1118)
T ss_pred             ccCCeEEEeecccccccccccchhhhhhhhhhhccCCc---ccccCchhhhhcccccceEEEEecccceee--ccccccC
Confidence            88999998763         557999999987543111   1111223455666543 2333444443322  22   11


Q ss_pred             cccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEe
Q psy11885        213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       213 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd  263 (327)
                      .....+..   .+...       +.+..+.+|+.++.+|-|..+|.|.+|.
T Consensus       300 NP~~~~~~---v~p~~-------s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  300 NPPAGVKM---VNPNG-------SGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCccceeE---EccCC-------CcceeEEecCCCceEEEecccCcEeeec
Confidence            11111111   11110       1267899999999999999999999996

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.24  E-value=0.00049  Score=61.30  Aligned_cols=262  Identities=13%  Similarity=0.130  Sum_probs=141.2

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEec--------------
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGL--------------   76 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~--------------   76 (327)
                      +...-.++.++|||. +.+|++.. -.-|.+|.-........+.|. .|..+.|+ .+.+|.+=+.              
T Consensus        29 ~~~~~p~~~~~~SP~-G~~l~~~~-~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~  105 (561)
T COG5354          29 ESENWPVAYVSESPL-GTYLFSEH-AAGVECWGGPSKAKLVRFRHP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT  105 (561)
T ss_pred             cccCcchhheeecCc-chheehhh-ccceEEccccchhheeeeecC-CceecccCcccceeeeeccCCccChhhccCCcc
Confidence            334457889999994 56777544 345899988776533333343 46666665 4555543222              


Q ss_pred             -CCcEEEEEcCCCceee-eecCCcc--EE-EEEEeCCCCEEEEEECCCeEEEEeCCCCce----eeeeeCCCcEEEEecC
Q psy11885         77 -DCTLKMFDFNTQTETV-IGTHDQP--IR-AVEYSDEVNCILTGSWDTSVKMWDPRSSRC----VGNYTQPDKVFTMSLC  147 (327)
Q Consensus        77 -Dg~i~vwd~~~~~~~~-~~~h~~~--V~-~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~----~~~~~~~~~~~~~~~~  147 (327)
                       +..+.+||+.++.... +.....+  .. .+.|+-+.++++-. ....+.++++ ++..    .+.+. +..+..++++
T Consensus       106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr-~~gi~dFsis  182 (561)
T COG5354         106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR-PVGILDFSIS  182 (561)
T ss_pred             ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc-ccceeeEEec
Confidence             3359999998886543 2222333  44 67888777766544 3356888887 3321    11122 2233344433


Q ss_pred             CC----eEEE-----EeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeec---------CeEEEEEc
Q psy11885        148 GE----KFVV-----GTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE---------GRAAVEYL  209 (327)
Q Consensus       148 ~~----~~~~-----~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~  209 (327)
                      +.    .|+.     ......+++|.+.....+...  .........+.+++.++.+++-...         |...++++
T Consensus       183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk--~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~  260 (561)
T COG5354         183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK--NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL  260 (561)
T ss_pred             CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee--eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence            22    3443     345678999988743322111  1111122334555555544332111         11112122


Q ss_pred             cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec--CCCeEEEEeCCCceeeeecCcCCcceEEEEECC
Q psy11885        210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG--SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  287 (327)
Q Consensus       210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs--~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp  287 (327)
                      ....           .....+ .....+|..++|.|+++.|++.+  .+-.+.++|++.. ....+  .+..=..+-|||
T Consensus       261 ~~~e-----------~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp  325 (561)
T COG5354         261 RITE-----------RSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP  325 (561)
T ss_pred             eecc-----------ccccee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC
Confidence            1110           001100 01234788999999999987654  6788999998753 33333  233335677888


Q ss_pred             CCCEEEEEE
Q psy11885        288 DGNVLAIAC  296 (327)
Q Consensus       288 dg~~la~~~  296 (327)
                      .++++..++
T Consensus       326 ~~r~il~ag  334 (561)
T COG5354         326 HERYILFAG  334 (561)
T ss_pred             cccEEEEec
Confidence            888887774

>KOG3617|consensus

Probab=98.23  E-value=4.7e-05  Score=71.62  Aligned_cols=107  Identities=17%  Similarity=0.265  Sum_probs=78.3

Q ss_pred             eEEEEecCCCcEEEEEEC----CCcEEEEECCCCeEEEEecCCCceeeEEEeCCc-eEEEEecCCcEEEEEcCCCcee-e
Q psy11885         19 TAVKFAPNSNQFLLASSW----DCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAV-HSFSGGLDCTLKMFDFNTQTET-V   92 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~-~~~sgs~Dg~i~vwd~~~~~~~-~   92 (327)
                      +-++|+|. ..++|+++.    .|+|.|| .++|++..-...+-.+.++||++.. .++.|-.-|.+.+|..+..... .
T Consensus        19 ti~SWHPs-ePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPS-EPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCCC-CceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            44678884 567777653    5789888 4555533222223345678997554 4556766799999987765543 4


Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCC
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR  127 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~  127 (327)
                      ...|..+|..+.||++|..++|+..-|.+.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            56799999999999999999999999999999865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.19  E-value=0.0011  Score=58.67  Aligned_cols=120  Identities=11%  Similarity=0.129  Sum_probs=94.4

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCC-cEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDC-NVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .+.++|+=..+.-+. +-++.|..|| .+-|+|..+++.......-+.|-++..+ ++..++.+.....+-+.|++++..
T Consensus       357 ~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         357 GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            345678777777754 4688888998 8999999999977666655678888875 778888888888888899999887


Q ss_pred             eeee-cCCccEEEEEEeCCCCEEEEEECC----CeEEEEeCCCCceee
Q psy11885         91 TVIG-THDQPIRAVEYSDEVNCILTGSWD----TSVKMWDPRSSRCVG  133 (327)
Q Consensus        91 ~~~~-~h~~~V~~l~~~~~~~~l~sgs~d----~~i~lwdl~~~~~~~  133 (327)
                      ..+. ...+-|..++|+|++++++-+--+    ..|+++|...++...
T Consensus       436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            6654 345679999999999999976444    578999998887543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.19  E-value=4.9e-05  Score=68.91  Aligned_cols=115  Identities=15%  Similarity=0.185  Sum_probs=79.5

Q ss_pred             CCCeeEEEEecCCCcEEEEE----ECCCc----EEEEECCCCeEEE----EecCCCceeeEEEe-CCceEEEEecCCcEE
Q psy11885         15 EDGITAVKFAPNSNQFLLAS----SWDCN----VSLYDITNNNLRL----KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLK   81 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~----~~d~~----i~iwd~~~~~~~~----~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~   81 (327)
                      |....++.||...+..+.+.    +.+|.    -.+|++..+++..    ....+..|.+++++ +...++.|..||+|+
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii  284 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII  284 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence            34557788887544555543    33443    2566666555322    33577788888884 677888999999999


Q ss_pred             EEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885         82 MFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR  130 (327)
Q Consensus        82 vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~  130 (327)
                      +||...+..... ...-....++|+|+|..+++|+..|.+++||+.-+.
T Consensus       285 LyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  285 LYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            999876643332 233446788999999999999999999999986543

>KOG1645|consensus

Probab=98.17  E-value=0.00018  Score=62.27  Aligned_cols=80  Identities=16%  Similarity=0.225  Sum_probs=67.9

Q ss_pred             eeeecCCccEEEEEEeCCCC-EEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecC---CCeEEEEeCCCeEEEEECC
Q psy11885         91 TVIGTHDQPIRAVEYSDEVN-CILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLC---GEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        91 ~~~~~h~~~V~~l~~~~~~~-~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~v~iwD~~  166 (327)
                      ..+.+|...|+.++|+|..+ ++..++.+++|++.|+++..++..+..+..+.+++++   .+.++.|-.+|.|.+||+|
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            35677888999999999776 7888999999999999999999998888877777765   3458888899999999999


Q ss_pred             CCcc
Q psy11885        167 NMGY  170 (327)
Q Consensus       167 ~~~~  170 (327)
                      +.+.
T Consensus       267 ~~~~  270 (463)
T KOG1645|consen  267 QPEG  270 (463)
T ss_pred             CCCc
Confidence            7653

>KOG2314|consensus

Probab=98.16  E-value=0.002  Score=58.20  Aligned_cols=260  Identities=14%  Similarity=0.136  Sum_probs=133.2

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEec-----------CCcEEEEEcC
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGL-----------DCTLKMFDFN   86 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~-----------Dg~i~vwd~~   86 (327)
                      |-+.|||. +.||++--.. -|.+|--++-.....+.|+ .|.-+.|+ ...+|+|=|.           -..+++||+.
T Consensus       214 tyv~wSP~-GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPK-GTYLVTFHKQ-GIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCC-ceEEEEEecc-ceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            57899995 6788886544 4789976665545556665 35566775 4556664321           2579999999


Q ss_pred             CCceee-eec--CCccEE-EEEEeCCCCEEEEEECCCeEEEEeCCCCceeee--eeCCCcE--EEEecCCCeEEEEeCC-
Q psy11885         87 TQTETV-IGT--HDQPIR-AVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN--YTQPDKV--FTMSLCGEKFVVGTAG-  157 (327)
Q Consensus        87 ~~~~~~-~~~--h~~~V~-~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~d-  157 (327)
                      ++.... +..  ....+. -+.||.|+++++-... +.|.+++..+-.++-.  +. ...+  ++++|.++.||--+.. 
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk-i~gIr~FswsP~~~llAYwtpe~  368 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK-ISGIRDFSWSPTSNLLAYWTPET  368 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccC-CccccCcccCCCcceEEEEcccc
Confidence            987542 222  222333 3689999999987766 5688888765332211  11 1122  3344444444332211 


Q ss_pred             ----CeEEEEECCCCccceeeeccccee-eeEEeEEeeCCCceEEEeecCeEEEEEccCCccc--ccceeeeeeeeecc-
Q psy11885        158 ----RKVCIWDLRNMGYIMQRRESSLKF-QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEM--QKMKYAFKCHRIKE-  229 (327)
Q Consensus       158 ----~~v~iwD~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~h~~~~-  229 (327)
                          ..+.+-.+.+++.+   +...+-. ....+.+..+++.+++-.          +..+..  ....+.+..-++.+ 
T Consensus       369 ~~~parvtL~evPs~~~i---Rt~nlfnVsDckLhWQk~gdyLcvkv----------dR~tK~~~~g~f~n~eIfrireK  435 (698)
T KOG2314|consen  369 NNIPARVTLMEVPSKREI---RTKNLFNVSDCKLHWQKSGDYLCVKV----------DRHTKSKVKGQFSNLEIFRIREK  435 (698)
T ss_pred             cCCcceEEEEecCcccee---eeccceeeeccEEEeccCCcEEEEEE----------EeeccccccceEeeEEEEEeecc
Confidence                12333343332211   1111111 111122222232222211          100000  00111111111111 


Q ss_pred             ----CCeeeEEEeeEEEEecCCCeEEEecC---CCeEEEEeCC-CceeeeecCcCC-cceEEEEECCCCCEEEEEE
Q psy11885        230 ----DGIEKIYPVNAISFHQEYNTFATGGS---DGYVNIWDGF-NKKRLCQFHRYD-TGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       230 ----~~~~~~~~v~~v~~spd~~~lasgs~---dg~i~iWd~~-~~~~~~~~~~~~-~~v~~l~fspdg~~la~~~  296 (327)
                          +..+---+|-..+|-|.|..|++-+.   -.++.+|-.. +......++..+ ..++.|-|||.|+.++.+.
T Consensus       436 dIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~  511 (698)
T KOG2314|consen  436 DIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAA  511 (698)
T ss_pred             CCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEE
Confidence                11111225778999999999886543   2578899876 332222222222 3578999999999999885

>KOG2066|consensus

Probab=98.16  E-value=2.6e-05  Score=72.71  Aligned_cols=145  Identities=13%  Similarity=0.155  Sum_probs=103.7

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeec
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGT   95 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~   95 (327)
                      +.+.|++++.   ++++-|..+|.|++.+..... ...+.|...     -.+|.+++|||.||+|.+-.+.+.+......
T Consensus        40 D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d  110 (846)
T KOG2066|consen   40 DAISCCAVHD---KFFALGTHRGAVYLTTCQGNP-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD  110 (846)
T ss_pred             hHHHHHHhhc---ceeeeccccceEEEEecCCcc-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence            4567777773   689999999999999986654 444444322     3468999999999999999887766554444


Q ss_pred             CCccEEEEEEeCC-----CCEEEEEECCCeEEEEeCCC---CceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885         96 HDQPIRAVEYSDE-----VNCILTGSWDTSVKMWDPRS---SRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus        96 h~~~V~~l~~~~~-----~~~l~sgs~d~~i~lwdl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~  167 (327)
                      -..++.+++++|+     .+.+++|+..| +.++.-+-   ...+-.....+.+.++.+.|+.+|=+..+| |+++|+..
T Consensus       111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~  188 (846)
T KOG2066|consen  111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPT  188 (846)
T ss_pred             cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccc
Confidence            4678999999998     46799999988 66654221   112211234567888888898877765554 89999987


Q ss_pred             Cccc
Q psy11885        168 MGYI  171 (327)
Q Consensus       168 ~~~~  171 (327)
                      .+.+
T Consensus       189 ~~~l  192 (846)
T KOG2066|consen  189 RQRL  192 (846)
T ss_pred             ccee
Confidence            6543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.14  E-value=0.0021  Score=53.64  Aligned_cols=142  Identities=14%  Similarity=0.149  Sum_probs=93.2

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeee--ecCC---ccEEEE
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVI--GTHD---QPIRAV  103 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~--~~h~---~~V~~l  103 (327)
                      ..+++++.++.+..||..+|+..-.......+...-...+..++.++.|+.+..+|..++.....  ....   ......
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~  116 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSS  116 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--S
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccccccccc
Confidence            46777789999999999999876555444443333334566777777889999999888876432  1111   111122


Q ss_pred             EEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc------------EEEEecCCCeEEEEeCCCe-EEEEECCCCcc
Q psy11885        104 EYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK------------VFTMSLCGEKFVVGTAGRK-VCIWDLRNMGY  170 (327)
Q Consensus       104 ~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~d~~-v~iwD~~~~~~  170 (327)
                      ....+++.++.+..++.|..+|+++|+.++.......            .......+..++.+..++. +.+ |+++++.
T Consensus       117 ~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~  195 (238)
T PF13360_consen  117 SPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEK  195 (238)
T ss_dssp             EEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEE
T ss_pred             CceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCE
Confidence            2222378899999999999999999999887654221            1223334447777777774 666 9998764


Q ss_pred             c
Q psy11885        171 I  171 (327)
Q Consensus       171 ~  171 (327)
                      .
T Consensus       196 ~  196 (238)
T PF13360_consen  196 L  196 (238)
T ss_dssp             E
T ss_pred             E
Confidence            3

...

>KOG2066|consensus

Probab=98.10  E-value=0.00043  Score=64.97  Aligned_cols=136  Identities=19%  Similarity=0.293  Sum_probs=97.9

Q ss_pred             CCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeC------CceEEEEecCCcEEEEEcC---CCceeeeecCC
Q psy11885         27 SNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQD------AVHSFSGGLDCTLKMFDFN---TQTETVIGTHD   97 (327)
Q Consensus        27 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~------~~~~~sgs~Dg~i~vwd~~---~~~~~~~~~h~   97 (327)
                      .+.+++++|.||+|.|-.+.+.+....+..+.++.++++++      ..++++||.-| +.++.-+   ......+....
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e  160 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE  160 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence            46899999999999999999988777777788899998843      35889999888 7776532   12223456678


Q ss_pred             ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE-------EEEecCCCeEEEEeCCCeEEEEECC
Q psy11885         98 QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV-------FTMSLCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        98 ~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~v~iwD~~  166 (327)
                      ++|.++.|..  ++++=++.+| |++||+.+++.+..++.+...       -.+.+-.+..++-++..+|+|.-++
T Consensus       161 G~I~~i~W~g--~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  161 GPIHSIKWRG--NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK  233 (846)
T ss_pred             cceEEEEecC--cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence            8999999974  6666666655 899999988877665543211       1122334444555677789998887

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.10  E-value=0.005  Score=52.86  Aligned_cols=264  Identities=9%  Similarity=0.119  Sum_probs=147.6

Q ss_pred             CCCCeeEEEEecCCCcEEEEEEC---CCcEEEEECCC--CeEEEEe---cCCCceeeEEEe-CCceEEEEec-CCcEEEE
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSW---DCNVSLYDITN--NNLRLKY---AHSDPVLDCCFQ-DAVHSFSGGL-DCTLKMF   83 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~---d~~i~iwd~~~--~~~~~~~---~h~~~v~~~~~~-~~~~~~sgs~-Dg~i~vw   83 (327)
                      ..+.++=|+|+|++ +.|.++-.   +|.|.-|.+..  |++...-   ....+...+++. ++..++++.. -|.|.++
T Consensus        38 ~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          38 ELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             ccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            34678899999964 55665533   57777777664  6643321   122233556664 6778877655 4789999


Q ss_pred             EcCCC-cee---eeecCCcc----------EEEEEEeCCCCEEEEEEC-CCeEEEEeCCCCceeeeee---C---CCcEE
Q psy11885         84 DFNTQ-TET---VIGTHDQP----------IRAVEYSDEVNCILTGSW-DTSVKMWDPRSSRCVGNYT---Q---PDKVF  142 (327)
Q Consensus        84 d~~~~-~~~---~~~~h~~~----------V~~l~~~~~~~~l~sgs~-d~~i~lwdl~~~~~~~~~~---~---~~~~~  142 (327)
                      -++.. ...   ....|.++          +....+.|++++|++..- -.+|.+|++..++....-.   .   ...-+
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi  196 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI  196 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence            88653 211   12234443          788899999999887633 3468999999876543211   1   12457


Q ss_pred             EEecCCCeEEEEe-CCCeEEEEECCCC-ccceee-ecccce------eeeEEeEEeeCCCceEEEeecCeEEEEEccCCc
Q psy11885        143 TMSLCGEKFVVGT-AGRKVCIWDLRNM-GYIMQR-RESSLK------FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP  213 (327)
Q Consensus       143 ~~~~~~~~~~~~~-~d~~v~iwD~~~~-~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  213 (327)
                      .+.++++...+.. .+++|-+|+.... ...... ....++      .....+...+++..+.++.- +...|+.+...+
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR-g~dsI~~f~V~~  275 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR-GHDSIAVFSVDP  275 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC-CCCeEEEEEEcC
Confidence            8888888876655 4789999988763 111111 111111      11244566666655544433 332333333222


Q ss_pred             ccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCC-CeEEEEeC--CCceeeeecCc-CCcceEEEEEC
Q psy11885        214 EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD-GYVNIWDG--FNKKRLCQFHR-YDTGITSLCFS  286 (327)
Q Consensus       214 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~d-g~i~iWd~--~~~~~~~~~~~-~~~~v~~l~fs  286 (327)
                      ...++...  .....+ +    .......|+|++++|+++.++ ..|.+|..  .+|+.-..... .-..-.||.|.
T Consensus       276 ~~g~L~~~--~~~~te-g----~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         276 DGGKLELV--GITPTE-G----QFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCCEEEEE--EEeccC-C----cCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            21211111  111110 0    124678899999999988886 46888854  44543222211 11123577774

>KOG0309|consensus

Probab=98.09  E-value=3e-05  Score=71.74  Aligned_cols=153  Identities=19%  Similarity=0.310  Sum_probs=92.5

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC-CeEEEEecCCCc--eeeEEEe----CCceEEEEecCCcEEEEEcC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN-NNLRLKYAHSDP--VLDCCFQ----DAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~h~~~--v~~~~~~----~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      -.+++.++..+|- ++=+|.++.-|. .+-|+.. ........|-.+  |-...|+    ....+++.+ .....+|++.
T Consensus        23 v~~~~~a~si~p~-grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA   99 (1081)
T KOG0309|consen   23 VDGGFNAVSINPS-GRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLA   99 (1081)
T ss_pred             ecCcccceeeccc-cchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhh
Confidence            3467889999995 455566665554 4445543 333333334332  3344452    223445555 4556688876


Q ss_pred             CCc----eeeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCc-eeeeee---CCCcEEEEecCCCeEEEEeCC
Q psy11885         87 TQT----ETVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSR-CVGNYT---QPDKVFTMSLCGEKFVVGTAG  157 (327)
Q Consensus        87 ~~~----~~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~d  157 (327)
                      ...    ...+.+|...|+.+.|.++. ..+++++.|-.+..||+++-. ++..+.   .......+..-...+++.+..
T Consensus       100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg  179 (1081)
T KOG0309|consen  100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG  179 (1081)
T ss_pred             cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC
Confidence            432    23567899999999999864 678899999999999998743 333222   122223333323345555677


Q ss_pred             CeEEEEECCCCc
Q psy11885        158 RKVCIWDLRNMG  169 (327)
Q Consensus       158 ~~v~iwD~~~~~  169 (327)
                      +.|++||+|-+.
T Consensus       180 ~~i~vwd~r~gs  191 (1081)
T KOG0309|consen  180 NDIFVWDLRKGS  191 (1081)
T ss_pred             CceEEEeccCCC
Confidence            789999988543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.06  E-value=0.0055  Score=55.56  Aligned_cols=141  Identities=9%  Similarity=-0.049  Sum_probs=88.8

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCC-----------ceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecCC
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSD-----------PVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHD   97 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~   97 (327)
                      ..+++++.++.+.-+|..+|+..-......           .+.+-....+..++.++.++.+..+|.++++........
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  149 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA  149 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence            356777788999999999888653332111           011101123567778888999999999888764322222


Q ss_pred             ccEEE-EEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEE----Ee--cCCCeEEEEeCCCeEEEEECCCCcc
Q psy11885         98 QPIRA-VEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFT----MS--LCGEKFVVGTAGRKVCIWDLRNMGY  170 (327)
Q Consensus        98 ~~V~~-l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~d~~v~iwD~~~~~~  170 (327)
                      ..+.+ ....  +..++.+..++.+..+|.++|+.++.+........    .+  ..+..++.++.++.+...|..+++.
T Consensus       150 ~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~  227 (394)
T PRK11138        150 GEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL  227 (394)
T ss_pred             CceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh
Confidence            22221 1121  35677788899999999999998887754321110    01  1245677788899999889887764


Q ss_pred             c
Q psy11885        171 I  171 (327)
Q Consensus       171 ~  171 (327)
                      .
T Consensus       228 ~  228 (394)
T PRK11138        228 I  228 (394)
T ss_pred             h
Confidence            3

>KOG1008|consensus

Probab=98.06  E-value=3.9e-06  Score=76.26  Aligned_cols=196  Identities=19%  Similarity=0.257  Sum_probs=126.5

Q ss_pred             CCCeeEEEEecCCC-cEEEEEECCCcEEEEECCCCe---EEEEecCCCceeeEEEe--CCceEEEEe----cCCcEEEEE
Q psy11885         15 EDGITAVKFAPNSN-QFLLASSWDCNVSLYDITNNN---LRLKYAHSDPVLDCCFQ--DAVHSFSGG----LDCTLKMFD   84 (327)
Q Consensus        15 ~~~I~~i~fs~~~~-~~l~s~~~d~~i~iwd~~~~~---~~~~~~h~~~v~~~~~~--~~~~~~sgs----~Dg~i~vwd   84 (327)
                      ...+.|++..-+.+ .++++|..+|.|.+-.+....   -.....|..++++++|.  +.+.+++|=    .|..+.+||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            35677887765433 588899999999998875432   22334566788999995  556776662    246799999


Q ss_pred             cCCCc--e----eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc-eeeeee-CCCcEEEEec-CCCeEEEEe
Q psy11885         85 FNTQT--E----TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR-CVGNYT-QPDKVFTMSL-CGEKFVVGT  155 (327)
Q Consensus        85 ~~~~~--~----~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~-~~~~~~-~~~~~~~~~~-~~~~~~~~~  155 (327)
                      +++..  +    .+..+......+++|..+.+++++|.....+.++|+|... ....+. ....-..+++ .++++++..
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~  215 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS  215 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence            98762  1    1222233456689999888999999999999999998432 111211 1223345555 566766654


Q ss_pred             CCCeEEEEE-CCCCcccee---eecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccC
Q psy11885        156 AGRKVCIWD-LRNMGYIMQ---RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT  211 (327)
Q Consensus       156 ~d~~v~iwD-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  211 (327)
                       |+.|.+|| .++.+...+   ..+...+.+...+++.|...+.++....+...|+.++.
T Consensus       216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence             99999999 444332211   11122233456678888888877777777777776664

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.04  E-value=0.00084  Score=48.06  Aligned_cols=102  Identities=15%  Similarity=0.173  Sum_probs=66.8

Q ss_pred             CeeEEEEec---CCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeee
Q psy11885         17 GITAVKFAP---NSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVI   93 (327)
Q Consensus        17 ~I~~i~fs~---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~   93 (327)
                      .|+++++..   ++..-|++|+.|..||+|+-+  ++..-..-...|.+++-....+++-+-..|+|-+|+-.. +.-..
T Consensus         1 ~V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~-RlWRi   77 (111)
T PF14783_consen    1 NVTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ-RLWRI   77 (111)
T ss_pred             CeeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcc-eeeee
Confidence            367777765   344679999999999999764  333333445678888876667888888899999887532 22222


Q ss_pred             ecCCccEEEEEEeC-C--C-CEEEEEECCCeEE
Q psy11885         94 GTHDQPIRAVEYSD-E--V-NCILTGSWDTSVK  122 (327)
Q Consensus        94 ~~h~~~V~~l~~~~-~--~-~~l~sgs~d~~i~  122 (327)
                      .. +..+.++.+.+ +  | ..|++|-.+|+|-
T Consensus        78 KS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   78 KS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            22 22345554432 3  2 3688888888764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.99  E-value=0.00048  Score=62.64  Aligned_cols=106  Identities=14%  Similarity=0.138  Sum_probs=74.1

Q ss_pred             eeEEEe--CCceEE----EEecCCcE----EEEEcCCCceee----eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeC
Q psy11885         61 LDCCFQ--DAVHSF----SGGLDCTL----KMFDFNTQTETV----IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP  126 (327)
Q Consensus        61 ~~~~~~--~~~~~~----sgs~Dg~i----~vwd~~~~~~~~----~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl  126 (327)
                      .++.|+  ...++.    +.+.+|.+    ++|++..++...    .-.....|.+.+++|+...++.|..||.|.+||.
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~  288 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT  288 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence            455664  344444    34555543    356665554322    1246778999999999999999999999999998


Q ss_pred             CCCceeee-eeCCCcEEEEecCCCeEEEEeCCCeEEEEECC
Q psy11885        127 RSSRCVGN-YTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus       127 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~  166 (327)
                      ..+..... ..-.....+++++|..+++|+..|.+.+||+.
T Consensus       289 ~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  289 TRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             CCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            76533222 11123456788889999999999999999986

>KOG4714|consensus

Probab=97.98  E-value=3.6e-05  Score=62.78  Aligned_cols=72  Identities=26%  Similarity=0.362  Sum_probs=60.9

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE--EEEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCC
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--RLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      +.|++++-+|..++++++|+.||.+.+||+.....  .....|+.++..+-|+  ++..+++++.||.+-.||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            45999999998778899999999999999988753  2334699999999994  678999999999999999764

>KOG0309|consensus

Probab=97.96  E-value=5.8e-05  Score=69.96  Aligned_cols=122  Identities=17%  Similarity=0.325  Sum_probs=89.7

Q ss_pred             eeecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EE-EecCCCceeeEEEe-CCceEEEEecCCcEEEE
Q psy11885          7 EYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RL-KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus         7 ~~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~-~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vw   83 (327)
                      +|-++. |...|+.+-|+|+....|++++.|-.+..||+.+-.. .. ...-..+-..+.|+ ....+++.+-...|++|
T Consensus       107 ef~lhg-hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw  185 (1081)
T KOG0309|consen  107 EFVLHG-HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW  185 (1081)
T ss_pred             EEEEec-CccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence            444444 6678999999998888999999999999999987552 22 22222344566774 44555566667789999


Q ss_pred             EcCCCce--eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCC
Q psy11885         84 DFNTQTE--TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSS  129 (327)
Q Consensus        84 d~~~~~~--~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~  129 (327)
                      |+..+..  ..+.+|...|+.++|.. .-..+++.+.|++|+.||-...
T Consensus       186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            9987653  35677888899888864 2356889999999999997643

>KOG0882|consensus

Probab=97.96  E-value=8.5e-05  Score=65.05  Aligned_cols=192  Identities=19%  Similarity=0.200  Sum_probs=112.6

Q ss_pred             cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce---eeeeeCC-C--cEEEEecCCCeEEEEeC-CCeEEEEECCC
Q psy11885         95 THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC---VGNYTQP-D--KVFTMSLCGEKFVVGTA-GRKVCIWDLRN  167 (327)
Q Consensus        95 ~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~---~~~~~~~-~--~~~~~~~~~~~~~~~~~-d~~v~iwD~~~  167 (327)
                      .|.+.|+.+.- .-.+.+++++.||.++.|.-..-.-   +..+..+ .  ..++.+..+..+.++.. |..++++|+.+
T Consensus         7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            46666665543 3457899999999999998532111   1111111 1  22345556777788666 99999999998


Q ss_pred             CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885        168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY  247 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~  247 (327)
                      ...+.......++-...++..-.+....++.+......+..+|.....+...+.-+         -|..||.++.+.|-+
T Consensus        86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk---------lH~sPV~~i~y~qa~  156 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK---------LHFSPVKKIRYNQAG  156 (558)
T ss_pred             cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc---------cccCceEEEEeeccc
Confidence            77654433334433222211111111233333333344444664443322221111         245689999999999


Q ss_pred             CeEEEecCCCeEEEEeCCC------ceeeee---------cCcCCcceEEEEECCCCCEEEEEE
Q psy11885        248 NTFATGGSDGYVNIWDGFN------KKRLCQ---------FHRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       248 ~~lasgs~dg~i~iWd~~~------~~~~~~---------~~~~~~~v~~l~fspdg~~la~~~  296 (327)
                      ..+++....|.|.-|....      .+....         +........++.|||+|..+++-.
T Consensus       157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~  220 (558)
T KOG0882|consen  157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN  220 (558)
T ss_pred             cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence            9999999999999998762      111111         112223457899999999998765

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.92  E-value=0.011  Score=50.64  Aligned_cols=140  Identities=14%  Similarity=0.167  Sum_probs=85.4

Q ss_pred             CCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceee-------------
Q psy11885         27 SNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETV-------------   92 (327)
Q Consensus        27 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~-------------   92 (327)
                      .++.|+.|..+| +.+++...........+..+|..+... +-+.++.-+ |+.+.+++++.-....             
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            346788898888 899998333222222333448777764 444444443 6999999987532211             


Q ss_pred             --eecCCccEEEEE--EeCCCCEEEEEECCCeEEEEeCCCC-----ceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEE
Q psy11885         93 --IGTHDQPIRAVE--YSDEVNCILTGSWDTSVKMWDPRSS-----RCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        93 --~~~h~~~V~~l~--~~~~~~~l~sgs~d~~i~lwdl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iw  163 (327)
                        .......+..++  -...+...+......+|.+|.....     +..+++..+..+..+.+.++.+++|..+ ...+.
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~-~f~~i  162 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSK-GFYLI  162 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCC-ceEEE
Confidence              011122344444  2234445555555669999887653     4556677777778888888888888754 46677


Q ss_pred             ECCCCc
Q psy11885        164 DLRNMG  169 (327)
Q Consensus       164 D~~~~~  169 (327)
                      |+.+..
T Consensus       163 dl~~~~  168 (275)
T PF00780_consen  163 DLNTGS  168 (275)
T ss_pred             ecCCCC
Confidence            887543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4714|consensus

Probab=97.87  E-value=5.8e-05  Score=61.58  Aligned_cols=67  Identities=22%  Similarity=0.212  Sum_probs=50.5

Q ss_pred             eeEEEEecCCC-eEEEecCCCeEEEEeCCCceeee-ecCcCCcceEEEEECCC-CCEEEEEEccccccCCC
Q psy11885        238 VNAISFHQEYN-TFATGGSDGYVNIWDGFNKKRLC-QFHRYDTGITSLCFSYD-GNVLAIACSYNYELETP  305 (327)
Q Consensus       238 v~~v~~spd~~-~lasgs~dg~i~iWd~~~~~~~~-~~~~~~~~v~~l~fspd-g~~la~~~~~~~~~~~~  305 (327)
                      |.+++-||..+ .++.|++||.+-+||.++..-+. .++.|+++++.+.|+|. +..|.++ +.+..|-.|
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~-sedGslw~w  251 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC-SEDGSLWHW  251 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe-cCCCcEEEE
Confidence            78889999665 45688899999999998875433 45788899999999994 6677666 444455444

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.83  E-value=0.00036  Score=67.14  Aligned_cols=135  Identities=18%  Similarity=0.225  Sum_probs=85.3

Q ss_pred             CEEEE-EECCCeEEEEeCCCCceeeeeeCCCc--EEEEecC-------CCeEEEEeCCCeEEEEECCCCccceeeecccc
Q psy11885        110 NCILT-GSWDTSVKMWDPRSSRCVGNYTQPDK--VFTMSLC-------GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSL  179 (327)
Q Consensus       110 ~~l~s-gs~d~~i~lwdl~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~  179 (327)
                      +.|+. ....+.|.-.|++.|+.+.++..+..  +..+.+.       +..-++|-.++.+..||.|-...         
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---------  564 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---------  564 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC---------
Confidence            44443 34567888889999998888765432  4455543       34567788888888888873110         


Q ss_pred             eeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeE
Q psy11885        180 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV  259 (327)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i  259 (327)
                                    .++-...    .  .+...                       ....|++-+.+| +||+||.+|.|
T Consensus       565 --------------k~v~~~~----k--~Y~~~-----------------------~~Fs~~aTt~~G-~iavgs~~G~I  600 (794)
T PF08553_consen  565 --------------KLVDSQS----K--QYSSK-----------------------NNFSCFATTEDG-YIAVGSNKGDI  600 (794)
T ss_pred             --------------ceeeccc----c--ccccC-----------------------CCceEEEecCCc-eEEEEeCCCcE
Confidence                          0000000    0  00000                       013455555555 89999999999


Q ss_pred             EEEeCCCceee-eecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        260 NIWDGFNKKRL-CQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       260 ~iWd~~~~~~~-~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      |+||-. |+.- ..+.+...||..|..+.||++|++.|.-
T Consensus       601 RLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  601 RLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             Eeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence            999943 3333 3456667899999999999999988753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.81  E-value=0.02  Score=51.06  Aligned_cols=81  Identities=19%  Similarity=0.129  Sum_probs=51.2

Q ss_pred             CCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeee--c-------C---------C
Q psy11885         37 DCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIG--T-------H---------D   97 (327)
Q Consensus        37 d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~--~-------h---------~   97 (327)
                      .+.+.|+|+++++..........+....|+ ++..++-.. ++.|.++++.++....+.  +       -         -
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~  100 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF  100 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence            567999999998866554444566777885 566666554 788999987666433221  1       0         0


Q ss_pred             ccEEEEEEeCCCCEEEEEECC
Q psy11885         98 QPIRAVEYSDEVNCILTGSWD  118 (327)
Q Consensus        98 ~~V~~l~~~~~~~~l~sgs~d  118 (327)
                      +.-.++-||||++.|+....|
T Consensus       101 ~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen  101 DRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             SSSBSEEE-TTSSEEEEEEEE
T ss_pred             ccccceEECCCCCEEEEEEEC
Confidence            112467899999988776544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.80  E-value=0.016  Score=48.85  Aligned_cols=180  Identities=13%  Similarity=0.082  Sum_probs=96.6

Q ss_pred             EEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-EEEEecCCCeEEEEeCCCeEEEEECCCCccceeeec--c
Q psy11885        102 AVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-VFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRE--S  177 (327)
Q Consensus       102 ~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~--~  177 (327)
                      +..|.+ ++.++.+--..++|..||..+++... +..+.. ...+...+..++++..++ +.++|..+.+.......  .
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~   81 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG   81 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC
Confidence            467887 56666666678999999998775432 333322 233332346666666544 45559877643211111  1


Q ss_pred             c-ceeeeEEeEEeeCCCceEEEeecCe------EEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeE
Q psy11885        178 S-LKFQTRCIKCFPNKQGYVLSSIEGR------AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF  250 (327)
Q Consensus       178 ~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~l  250 (327)
                      . ....++.+++.+++..+++......      ..++.++....   .....          ......+.++|+||++.|
T Consensus        82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~---~~~~~----------~~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGK---VTVVA----------DGLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSE---EEEEE----------EEESSEEEEEEETTSSEE
T ss_pred             CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCe---EEEEe----------cCcccccceEECCcchhe
Confidence            1 1223455666676664444332211      34444443311   11100          112236789999999977


Q ss_pred             E-EecCCCeEEEEeCCCc-e------eeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885        251 A-TGGSDGYVNIWDGFNK-K------RLCQFHRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       251 a-sgs~dg~i~iWd~~~~-~------~~~~~~~~~~~v~~l~fspdg~~la~~~  296 (327)
                      . +-+..+.|..+++... .      ....+.......-.+++..+|++.++..
T Consensus       149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~  202 (246)
T PF08450_consen  149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW  202 (246)
T ss_dssp             EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred             eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc
Confidence            5 5667788999987522 1      1222222222357799999998777643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1912|consensus

Probab=97.80  E-value=0.0025  Score=59.94  Aligned_cols=147  Identities=12%  Similarity=0.188  Sum_probs=103.8

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEeCC-------------ceEEEEecCCcEE
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQDA-------------VHSFSGGLDCTLK   81 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~~~-------------~~~~sgs~Dg~i~   81 (327)
                      .+-.++.|+|. + ++|-| .-..|.+-|..+-+..... .|+..|+.+.|.+.             -.++++...|.|.
T Consensus        16 sN~~A~Dw~~~-G-LiAyg-shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   16 SNRNAADWSPS-G-LIAYG-SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             ccccccccCcc-c-eEEEe-cCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            45678999994 3 44444 4678899998887755444 57788999998321             1456777789999


Q ss_pred             EEEcCCCce-eeeecCCccEEEEEEeC---CC-CEEEEEECCCeEEEEeCCCCceeeeeeCCCcEE-EEecC---CCeEE
Q psy11885         82 MFDFNTQTE-TVIGTHDQPIRAVEYSD---EV-NCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVF-TMSLC---GEKFV  152 (327)
Q Consensus        82 vwd~~~~~~-~~~~~h~~~V~~l~~~~---~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~-~~~~~---~~~~~  152 (327)
                      +||...... ..+..|..+|..++|-+   +. ..|+.-+.-.+|.+|+..+|+.++.+.....+. ++..+   ...+.
T Consensus        93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~  172 (1062)
T KOG1912|consen   93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC  172 (1062)
T ss_pred             EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence            999876654 35677889999999864   33 455666777899999999999999887655543 35443   34566


Q ss_pred             EEeCCCeEEEEEC
Q psy11885        153 VGTAGRKVCIWDL  165 (327)
Q Consensus       153 ~~~~d~~v~iwD~  165 (327)
                      ..+..|.|-+-+.
T Consensus       173 ~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  173 VLGSKGFVLSCKD  185 (1062)
T ss_pred             EEccCceEEEEec
Confidence            6666776666554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.78  E-value=0.033  Score=52.02  Aligned_cols=143  Identities=13%  Similarity=0.126  Sum_probs=87.2

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCc------ee-eEEEeCCceEEEEe---------cCCcEEEEEcCCCceee
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDP------VL-DCCFQDAVHSFSGG---------LDCTLKMFDFNTQTETV   92 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~------v~-~~~~~~~~~~~sgs---------~Dg~i~vwd~~~~~~~~   92 (327)
                      ..++.++.++.|.-+|.++|+..-...-...      +. +..+.+ ..++.++         .++.+..+|.++++...
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            4677788899999999999986544432221      11 112223 3444443         36778888988876543


Q ss_pred             eec--CC-------------------ccE-EEEEEeCCCCEEEEEECCC------------------eEEEEeCCCCcee
Q psy11885         93 IGT--HD-------------------QPI-RAVEYSDEVNCILTGSWDT------------------SVKMWDPRSSRCV  132 (327)
Q Consensus        93 ~~~--h~-------------------~~V-~~l~~~~~~~~l~sgs~d~------------------~i~lwdl~~~~~~  132 (327)
                      ...  ..                   ..| ....+.+.+..++.++.++                  .|..+|.++++..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            211  11                   011 1234455567788877654                  7999999999988


Q ss_pred             eeeeCCCc-----------E-EEEe-cCCC---eEEEEeCCCeEEEEECCCCccce
Q psy11885        133 GNYTQPDK-----------V-FTMS-LCGE---KFVVGTAGRKVCIWDLRNMGYIM  172 (327)
Q Consensus       133 ~~~~~~~~-----------~-~~~~-~~~~---~~~~~~~d~~v~iwD~~~~~~~~  172 (327)
                      +.++....           . .... .++.   .+++++.+|.+...|.++++.+-
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W  325 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS  325 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence            87653210           0 0111 2233   46778889999999999887653

The alignment model contains an 8-bladed beta-propeller.

>KOG1645|consensus

Probab=97.76  E-value=0.0038  Score=54.32  Aligned_cols=77  Identities=14%  Similarity=0.328  Sum_probs=63.9

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEE--eCCceEEEEecCCcEEEEEcCCCc
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCF--QDAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~--~~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      .+..-|+.++|||....++..++.+..|+|.|+++......+.-..++.+|+|  .+.+.++.|-..|.|.++|++...
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            34567999999996555888999999999999999886665543478999999  367889999999999999998654

>KOG1275|consensus

Probab=97.72  E-value=0.0012  Score=63.00  Aligned_cols=178  Identities=13%  Similarity=0.108  Sum_probs=117.6

Q ss_pred             CcEEEEEECCCcEEEEECCCCeEEEEecCCC-ceeeEEEeCCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEE
Q psy11885         28 NQFLLASSWDCNVSLYDITNNNLRLKYAHSD-PVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEY  105 (327)
Q Consensus        28 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~  105 (327)
                      +..++.||....+..+|+.+.+......-.. .|.-++ .++..+++|...|+|.+-|.++.+. ..+..|++.|.++. 
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR-~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD-  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR-YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD-  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEE-ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee-
Confidence            3467888888999999999988665554322 344343 3567888999999999999987654 56788999887665 


Q ss_pred             eCCCCEEEEEECCC---------eEEEEeCCCCceeeeeeCCC--cEEEEecC-CCeEEEEeCCCeEEEEECCCCccc--
Q psy11885        106 SDEVNCILTGSWDT---------SVKMWDPRSSRCVGNYTQPD--KVFTMSLC-GEKFVVGTAGRKVCIWDLRNMGYI--  171 (327)
Q Consensus       106 ~~~~~~l~sgs~d~---------~i~lwdl~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~d~~v~iwD~~~~~~~--  171 (327)
                       -.|+.|+++|...         -|++||||+-+.+.-+..+.  ...-+.|. ..++++.+..|...+-|..+....  
T Consensus       225 -v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~  303 (1118)
T KOG1275|consen  225 -VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA  303 (1118)
T ss_pred             -ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence             4578999987643         47899999866544333221  12223333 457888899999999884332211  


Q ss_pred             eeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEE
Q psy11885        172 MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEY  208 (327)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  208 (327)
                      -...............++++++.++.+..+|.+.+|-
T Consensus       304 ~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  304 GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            0001111222234556677888888888888877744

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.68  E-value=0.028  Score=48.15  Aligned_cols=99  Identities=9%  Similarity=0.042  Sum_probs=62.7

Q ss_pred             CeeEEEEecCCCcEEEEEECCC-cEEEEECCCCeEEEEe-cCCCce--eeEEEe-CCceEEEE-----ecCCcEEEEEcC
Q psy11885         17 GITAVKFAPNSNQFLLASSWDC-NVSLYDITNNNLRLKY-AHSDPV--LDCCFQ-DAVHSFSG-----GLDCTLKMFDFN   86 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~-~h~~~v--~~~~~~-~~~~~~sg-----s~Dg~i~vwd~~   86 (327)
                      .-..++.+|.....++.+=.-| -..+||..+++..... ...+.-  -..+|+ ++.++++.     ...|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            3456788886666777776665 4688999888754332 111111  124675 78888865     345889999998


Q ss_pred             CCcee--eeecCCccEEEEEEeCCCCEEEEE
Q psy11885         87 TQTET--VIGTHDQPIRAVEYSDEVNCILTG  115 (327)
Q Consensus        87 ~~~~~--~~~~h~~~V~~l~~~~~~~~l~sg  115 (327)
                      .....  .+..|.-.-..+.+.|||+.|+.+
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA  116 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVA  116 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence            43322  344444334567788999777765

>KOG3621|consensus

Probab=97.66  E-value=0.0005  Score=63.64  Aligned_cols=142  Identities=13%  Similarity=0.152  Sum_probs=93.6

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec--CCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee-
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA--HSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET-   91 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~-   91 (327)
                      ..|.--+++- ..++++.|+.-|.+++|+...++.+....  ....+..++.+ ....++.|+..|.|.++.++...+. 
T Consensus        34 ~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   34 ARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             ceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            3444444454 35799999999999999999888543322  22333344455 4556667888889999988765331 


Q ss_pred             -e-----eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce----eee-eeCCCcEEEEecCCCeEEEEeCCC
Q psy11885         92 -V-----IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC----VGN-YTQPDKVFTMSLCGEKFVVGTAGR  158 (327)
Q Consensus        92 -~-----~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~d~  158 (327)
                       .     -..|...|++++|++++..+++|...|+|.+-.|.++..    .+. +..+..++.++....++++++.-+
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r  190 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR  190 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhh
Confidence             1     124778899999999999999999999999888776311    111 223445556665555555554433

>KOG1832|consensus

Probab=97.66  E-value=0.00011  Score=69.49  Aligned_cols=185  Identities=16%  Similarity=0.197  Sum_probs=109.9

Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-EEEEec--CCCeEEEE-eCCC-eEEEEECCC
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-VFTMSL--CGEKFVVG-TAGR-KVCIWDLRN  167 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~-~~d~-~v~iwD~~~  167 (327)
                      +..|+..-++++|+.+.+.|+.|+..|.|+++++.+|.......-++. +.-+.|  +|..+++. +... -..+|++..
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence            456778889999999999999999999999999999876555443332 222333  45555544 4444 578999875


Q ss_pred             CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885        168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY  247 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~  247 (327)
                      .....+    ... ...++.|+...+..++++......++...+...........-         ...+.-++..|+|+.
T Consensus      1177 ~~~~~H----sf~-ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~---------~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1177 TGGPRH----SFD-EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV---------TSSYSNNLAHFSPCD 1242 (1516)
T ss_pred             ccCccc----ccc-ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch---------hhhhhccccccCCCc
Confidence            321111    111 124566666655666777766666655544433322111000         001123567888887


Q ss_pred             CeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       248 ~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      ..+.   .||.  +||.+..+.++.|..+.-.+ .=.|+|.|..++.-+.
T Consensus      1243 ~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1243 TLIL---NDGV--LWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE 1286 (1516)
T ss_pred             ceEe---eCce--eeeeccHHHHhhhhhheecc-cccccCCCceEEeech
Confidence            7766   4554  78887766565554443211 1267777777776653

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.58  E-value=0.028  Score=50.63  Aligned_cols=258  Identities=18%  Similarity=0.170  Sum_probs=119.1

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-E-ecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCC-----c
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-K-YAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQ-----T   89 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~-~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~-----~   89 (327)
                      .|+.++|+++. .-|++|-..|.|-||.....+... . ...........++        ..++.-.+-|+...     +
T Consensus         3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~di~~r~~~~~~   73 (395)
T PF08596_consen    3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFS--------LNNSPGKLTDISDRAPPSLK   73 (395)
T ss_dssp             -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S----------GGGSS-SEEE-GGG--TT-S
T ss_pred             eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccccc--------ccCCCcceEEehhhCCcccc
Confidence            58999999964 457888889999999876544221 0 0000011111121        00112223333221     1


Q ss_pred             ----e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee--C-------CCcE--EEEe---cCC--
Q psy11885         90 ----E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT--Q-------PDKV--FTMS---LCG--  148 (327)
Q Consensus        90 ----~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~--~-------~~~~--~~~~---~~~--  148 (327)
                          + ..+....++|++++.|.- ..++.|+.+|.+.+.|+|....+..-.  .       ...+  +.|.   ..+  
T Consensus        74 ~gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   74 EGFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             cccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence                1 123445789999999754 489999999999999998877655421  1       0111  2222   122  


Q ss_pred             ---CeEEEEeCCCeEEEEECC--CCc-ccee-eecc-cceeeeEEeEEeeCC---------------------CceEEEe
Q psy11885        149 ---EKFVVGTAGRKVCIWDLR--NMG-YIMQ-RRES-SLKFQTRCIKCFPNK---------------------QGYVLSS  199 (327)
Q Consensus       149 ---~~~~~~~~d~~v~iwD~~--~~~-~~~~-~~~~-~~~~~~~~~~~~~~~---------------------~~~~~~~  199 (327)
                         -.+++|+..|.+.+|.+-  ..+ .... .... ........+......                     +++++.+
T Consensus       153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv  232 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV  232 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred             ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence               248889999999999764  111 1000 0000 011111111111110                     2344444


Q ss_pred             ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE-----ecCCCeEEEecCCCeEEEEeCCCceeeeecC
Q psy11885        200 IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF-----HQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  274 (327)
Q Consensus       200 ~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~-----spd~~~lasgs~dg~i~iWd~~~~~~~~~~~  274 (327)
                      .+...++...-...         ..|+...+..    .+..+++     ...+..|+.=..+|.|+++.+...+.+....
T Consensus       233 Se~~irv~~~~~~k---------~~~K~~~~~~----~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~  299 (395)
T PF08596_consen  233 SESDIRVFKPPKSK---------GAHKSFDDPF----LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS  299 (395)
T ss_dssp             -SSEEEEE-TT------------EEEEE-SS-E----EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred             cccceEEEeCCCCc---------ccceeecccc----ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence            44444442221111         1122221111    1222233     2345567777889999999999988876654


Q ss_pred             cCC----cceEEEEECCCCCEEEEEEc
Q psy11885        275 RYD----TGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       275 ~~~----~~v~~l~fspdg~~la~~~~  297 (327)
                      -..    ..+....|+++|..+...+.
T Consensus       300 l~~~~d~~~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  300 LPPPLDSRRLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             -SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred             CCCccccccccccEECCCCCEEEEeCc
Confidence            321    23556788999998877754

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114|consensus

Probab=97.57  E-value=0.028  Score=53.70  Aligned_cols=214  Identities=14%  Similarity=0.153  Sum_probs=113.7

Q ss_pred             eCCceEEEEecCCcEEEEEcCCCceeeeecCCcc-EEEEEEeCCCCEEEEEECCC-----eEEEEeCCCC------ceee
Q psy11885         66 QDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQP-IRAVEYSDEVNCILTGSWDT-----SVKMWDPRSS------RCVG  133 (327)
Q Consensus        66 ~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~sgs~d~-----~i~lwdl~~~------~~~~  133 (327)
                      +.+..++-|+.||.|.+.+-.-....-+..+... |..|-...+.+.|++.+.|.     .|++||++..      .|+.
T Consensus        33 s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~  112 (933)
T KOG2114|consen   33 SSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY  112 (933)
T ss_pred             CCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence            5677888999999887775332221234445444 44454444446788877765     4899999643      2332


Q ss_pred             e---ee--C-----CCcEEEEecCCCeEEEEeCCCeEEEEE--CCCCccceeeecccceeeeEEeEEeeCCCceEEEeec
Q psy11885        134 N---YT--Q-----PDKVFTMSLCGEKFVVGTAGRKVCIWD--LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE  201 (327)
Q Consensus       134 ~---~~--~-----~~~~~~~~~~~~~~~~~~~d~~v~iwD--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (327)
                      +   +.  .     +..+++++.+-..+++|..+|.|..+.  +-...............+...+.+..++...+.....
T Consensus       113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt  192 (933)
T KOG2114|consen  113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT  192 (933)
T ss_pred             eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEec
Confidence            1   12  1     223455666666789999999988873  2111111112222333445556666665553344444


Q ss_pred             CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC-cCCcce
Q psy11885        202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-RYDTGI  280 (327)
Q Consensus       202 ~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~-~~~~~v  280 (327)
                      ..+.++.....+ ...  ..+..|     |    .+++|.+|++....|+.++ +..+.+|+....++-..+. ++... 
T Consensus       193 ~~V~~y~l~gr~-p~~--~~ld~~-----G----~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~-  258 (933)
T KOG2114|consen  193 EQVMLYSLSGRT-PSL--KVLDNN-----G----ISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKE-  258 (933)
T ss_pred             ceeEEEEecCCC-cce--eeeccC-----C----ccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEE-
Confidence            444443333111 000  001111     1    2588999987666455553 4568999976555444554 33322 


Q ss_pred             EEEEECCCCCEEEEE
Q psy11885        281 TSLCFSYDGNVLAIA  295 (327)
Q Consensus       281 ~~l~fspdg~~la~~  295 (327)
                        +-|...|.+|+..
T Consensus       259 --~~~~~~g~~L~v~  271 (933)
T KOG2114|consen  259 --MLVFSFGLLLCVT  271 (933)
T ss_pred             --EEEEecCEEEEEE
Confidence              2232335566555

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.57  E-value=0.029  Score=46.87  Aligned_cols=32  Identities=13%  Similarity=0.248  Sum_probs=27.9

Q ss_pred             cEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885         99 PIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR  130 (327)
Q Consensus        99 ~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~  130 (327)
                      .=+-++|+||+..|+.+...|+|++||+...+
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~   76 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE   76 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence            35779999999999999999999999997543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.54  E-value=0.0098  Score=42.66  Aligned_cols=97  Identities=16%  Similarity=0.217  Sum_probs=61.8

Q ss_pred             eeeEEEe--C---CceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee
Q psy11885         60 VLDCCFQ--D---AVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN  134 (327)
Q Consensus        60 v~~~~~~--~---~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~  134 (327)
                      |.++++.  +   .+.|+.||.|..||+|+-+.  ...-......|.+|+.... ..++.+...|+|-+|+-.  +.++.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee
Confidence            5666653  2   36899999999999997432  1111233467888887665 579999999999999753  23344


Q ss_pred             eeCCCcEEEE---ecCCC---eEEEEeCCCeEE
Q psy11885        135 YTQPDKVFTM---SLCGE---KFVVGTAGRKVC  161 (327)
Q Consensus       135 ~~~~~~~~~~---~~~~~---~~~~~~~d~~v~  161 (327)
                      .+....+.++   ..+++   .|++|-.+|.|-
T Consensus        77 iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4443334333   33322   477887777664

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.53  E-value=0.056  Score=47.82  Aligned_cols=84  Identities=18%  Similarity=0.220  Sum_probs=40.5

Q ss_pred             EEecCCCcEEEEEECCC--cEEEEECCCCeEEEEecCCC-ceeeEEE-eCCceEEEEecCCcEEEEEcCCCceeee-ecC
Q psy11885         22 KFAPNSNQFLLASSWDC--NVSLYDITNNNLRLKYAHSD-PVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETVI-GTH   96 (327)
Q Consensus        22 ~fs~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~h~~-~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~~~-~~h   96 (327)
                      +|.+++.++|+++..||  .+.+-|+.+++..++..... ....... ++...++=-.....++..|+++.+...+ ...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            45666667777777676  56666888998766654332 2223333 3455554343456788888888766433 333


Q ss_pred             CccEEEEEE
Q psy11885         97 DQPIRAVEY  105 (327)
Q Consensus        97 ~~~V~~l~~  105 (327)
                      +.-+....|
T Consensus       122 ~~~~g~gt~  130 (386)
T PF14583_consen  122 DDWKGYGTW  130 (386)
T ss_dssp             TTEEEEEEE
T ss_pred             cccccccce
Confidence            333333344

>KOG1920|consensus

Probab=97.51  E-value=0.021  Score=56.51  Aligned_cols=219  Identities=15%  Similarity=0.138  Sum_probs=122.8

Q ss_pred             CCceeeEEE-eCCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeee
Q psy11885         57 SDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY  135 (327)
Q Consensus        57 ~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~  135 (327)
                      ++.|.++.| .+...++.+..+|.|.+-|.++......+..+..|.+.+|+||.+.++-.+.++++.+-+ .+-.++...
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence            357888887 478888888889999999888777666677788899999999999999988888875433 222222111


Q ss_pred             eCCCcEEEEecC-CCeEEEEeCCCeEEEEECCCCc-----ccee-e--ecccceeeeEEeEEeeCCCceEEEe---ecCe
Q psy11885        136 TQPDKVFTMSLC-GEKFVVGTAGRKVCIWDLRNMG-----YIMQ-R--RESSLKFQTRCIKCFPNKQGYVLSS---IEGR  203 (327)
Q Consensus       136 ~~~~~~~~~~~~-~~~~~~~~~d~~v~iwD~~~~~-----~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  203 (327)
                      ....     ... -..++.+++.+.=.-+--..++     .... .  .......+...+.+-.+++.++++.   ..+.
T Consensus       147 ~L~~-----d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  147 PLDA-----DDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             cccc-----ccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence            1000     000 0112333333211111100000     0000 0  0001112223455666666666643   2233


Q ss_pred             EEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec---CCCeEEEEeCCCceee----eecCcC
Q psy11885        204 AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG---SDGYVNIWDGFNKKRL----CQFHRY  276 (327)
Q Consensus       204 ~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs---~dg~i~iWd~~~~~~~----~~~~~~  276 (327)
                      ..+..|+.....+....       ...+     --.+++|-|.|..+|+-.   .|+.|.++.- +|.+-    ..+...
T Consensus       222 RkirV~drEg~Lns~se-------~~~~-----l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~d  288 (1265)
T KOG1920|consen  222 RKIRVYDREGALNSTSE-------PVEG-----LQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLD  288 (1265)
T ss_pred             eeEEEecccchhhcccC-------cccc-----cccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCccc
Confidence            55566765432221110       0011     124799999999998753   4567999973 33221    222333


Q ss_pred             CcceEEEEECCCCCEEEE
Q psy11885        277 DTGITSLCFSYDGNVLAI  294 (327)
Q Consensus       277 ~~~v~~l~fspdg~~la~  294 (327)
                      +..|..|+|+.++..||+
T Consensus       289 e~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  289 EKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             ccchheeeecCCCCceee
Confidence            445899999999999998

>KOG2114|consensus

Probab=97.41  E-value=0.073  Score=51.02  Aligned_cols=185  Identities=14%  Similarity=0.164  Sum_probs=105.6

Q ss_pred             EecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCc-eeeEEEe-CCceEEEEecCCc-----EEEEEcCCC---c-ee
Q psy11885         23 FAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDP-VLDCCFQ-DAVHSFSGGLDCT-----LKMFDFNTQ---T-ET   91 (327)
Q Consensus        23 fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~-v~~~~~~-~~~~~~sgs~Dg~-----i~vwd~~~~---~-~~   91 (327)
                      |++ ++..++.|+++|.|.+.+-.-.......+++.. |..+-.- +.+.++|-+.|..     +++|+++..   . +.
T Consensus        31 ~~s-~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   31 CSS-STGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             EcC-CCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            456 456899999999988887644333555555555 4333332 3467778777754     899998753   1 22


Q ss_pred             ee-----ec-----CCccEEEEEEeCCCCEEEEEECCCeEEEEeC---CCCceeeee--eCCCcEEE--EecCCCeEEEE
Q psy11885         92 VI-----GT-----HDQPIRAVEYSDEVNCILTGSWDTSVKMWDP---RSSRCVGNY--TQPDKVFT--MSLCGEKFVVG  154 (327)
Q Consensus        92 ~~-----~~-----h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl---~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~  154 (327)
                      ++     .+     ...|+.+++.+.+-+.++.|-.+|.|-.+.-   |.+..-..+  .....++.  +..++...+.+
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv  189 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV  189 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence            22     22     2457889999999999999999999987742   111111112  22333444  33445553334


Q ss_pred             eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCC
Q psy11885        155 TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG  212 (327)
Q Consensus       155 ~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  212 (327)
                      ..-..|.+|.+.+.. +............+|..+.+....++++..   ..+.+++..
T Consensus       190 ~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~---e~l~fY~sd  243 (933)
T KOG2114|consen  190 ATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAGS---EFLYFYDSD  243 (933)
T ss_pred             EecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEecC---ceEEEEcCC
Confidence            445678888887433 211111222234466666665554444432   334555543

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.40  E-value=0.079  Score=49.87  Aligned_cols=152  Identities=15%  Similarity=0.115  Sum_probs=87.4

Q ss_pred             eCCCCEEEEEECCCeEEEEeCCC-----CceeeeeeCCCc--EEEEecCCCeEEEE-eCCCeEEEEECCCCccceeeecc
Q psy11885        106 SDEVNCILTGSWDTSVKMWDPRS-----SRCVGNYTQPDK--VFTMSLCGEKFVVG-TAGRKVCIWDLRNMGYIMQRRES  177 (327)
Q Consensus       106 ~~~~~~l~sgs~d~~i~lwdl~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~d~~v~iwD~~~~~~~~~~~~~  177 (327)
                      .++|+....  .+++|.+.|.++     .+.+..+..+..  -+.++++|++++++ ..+++|.|.|+++.+.....   
T Consensus       285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~---  359 (635)
T PRK02888        285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG---  359 (635)
T ss_pred             hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc---
Confidence            456776665  368899999988     355566655433  46678889887665 45889999999865421100   


Q ss_pred             cceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCC
Q psy11885        178 SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG  257 (327)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg  257 (327)
                      .+..           ...+.+.         ...                   +.+    ....+|.++|....|=--|.
T Consensus       360 ~~~~-----------~~~vvae---------vev-------------------GlG----PLHTaFDg~G~aytslf~ds  396 (635)
T PRK02888        360 KIKP-----------RDAVVAE---------PEL-------------------GLG----PLHTAFDGRGNAYTTLFLDS  396 (635)
T ss_pred             cCCc-----------cceEEEe---------ecc-------------------CCC----cceEEECCCCCEEEeEeecc
Confidence            0000           0000100         000                   000    12357888888777777888


Q ss_pred             eEEEEeCCC----------ceeeeecCcCCcce-----EEEEECCCCCEEEEEEccccccCCC
Q psy11885        258 YVNIWDGFN----------KKRLCQFHRYDTGI-----TSLCFSYDGNVLAIACSYNYELETP  305 (327)
Q Consensus       258 ~i~iWd~~~----------~~~~~~~~~~~~~v-----~~l~fspdg~~la~~~~~~~~~~~~  305 (327)
                      .|-.|++.+          ...+.++.-|-.+-     ..=.-.|||++|++...+..-+--+
T Consensus       397 qv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~  459 (635)
T PRK02888        397 QIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLP  459 (635)
T ss_pred             eeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccC
Confidence            999999765          12333333222221     1123478999998887654444444

>smart00320 WD40 WD40 repeats

Probab=97.35  E-value=0.0007  Score=37.69  Aligned_cols=33  Identities=27%  Similarity=0.613  Sum_probs=29.7

Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEe
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD  125 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwd  125 (327)
                      +..|...|.++.|.++++.+++++.|+.+++||
T Consensus         8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456788999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1920|consensus

Probab=97.19  E-value=0.13  Score=51.18  Aligned_cols=242  Identities=12%  Similarity=0.130  Sum_probs=118.5

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC--
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ--   88 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~--   88 (327)
                      ..+.+.|.++.|.-+.+ -++.+..+|.|.+-|.++......-.-...|.+++|+ +...++-...++++.+-.-.-.  
T Consensus        65 ~~gd~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   65 EDGDDEIVSVQFLADTN-SICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI  143 (1265)
T ss_pred             cCCCcceEEEEEecccc-eEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence            34557899999998654 4566677888888898887755444445678889996 5666665555666665432111  


Q ss_pred             ceeeeec---CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce-ee--eeeCCCcEEEEecCCCeEEEEe-----CC
Q psy11885         89 TETVIGT---HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC-VG--NYTQPDKVFTMSLCGEKFVVGT-----AG  157 (327)
Q Consensus        89 ~~~~~~~---h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~-----~d  157 (327)
                      ....+..   ..+..-.+.|-.....+ .|+ .|+....+....+. ..  ....+...+++..+|+.+++..     ..
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             hccccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence            0011100   01112223332211111 111 11111111111100 00  1122334566777788888732     23


Q ss_pred             CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeec-CeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      +.+++||-. +..-..  .........++++-|.+..+++.-.. ....|.+++....... .+.++   ...+.    -
T Consensus       222 RkirV~drE-g~Lns~--se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg-~f~l~---~p~de----~  290 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNST--SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG-EFVLP---FPLDE----K  290 (1265)
T ss_pred             eeEEEeccc-chhhcc--cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc-ccccC---Ccccc----c
Confidence            799999976 221100  11111122445566655444432211 1112333432221100 00000   00111    1


Q ss_pred             EeeEEEEecCCCeEEE---ecCCCeEEEEeCCCc
Q psy11885        237 PVNAISFHQEYNTFAT---GGSDGYVNIWDGFNK  267 (327)
Q Consensus       237 ~v~~v~~spd~~~las---gs~dg~i~iWd~~~~  267 (327)
                      +|..++|+.++..||+   ......|++|-..+.
T Consensus       291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             chheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            3788999999999998   556667999987654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.18  E-value=0.14  Score=44.63  Aligned_cols=254  Identities=16%  Similarity=0.122  Sum_probs=133.4

Q ss_pred             CcEEEEECCCCeEEEEecCCCceeeEEE-eCCceEEE----------EecCCcEEEEEcCCCcee---eeec-CC----c
Q psy11885         38 CNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFS----------GGLDCTLKMFDFNTQTET---VIGT-HD----Q   98 (327)
Q Consensus        38 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~-~~~~~~~s----------gs~Dg~i~vwd~~~~~~~---~~~~-h~----~   98 (327)
                      +.+.+.|..++++.-...-...- .+.. +++..+++          |-..-.|.+||..+-...   .++. |.    .
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~   95 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP   95 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred             ceEEEEECCCCcEEEEeecccCC-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence            47999999988864332211111 1223 45666653          333446889998876432   2332 11    1


Q ss_pred             cEEEEEEeCCCCEEEEE--ECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeec
Q psy11885         99 PIRAVEYSDEVNCILTG--SWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRE  176 (327)
Q Consensus        99 ~V~~l~~~~~~~~l~sg--s~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~  176 (327)
                      ....+.++.|+++++..  +--..|-+-|+..++.+.++..++....+-..+..|.+.+.||++....+...+...+...
T Consensus        96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t  175 (342)
T PF06433_consen   96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST  175 (342)
T ss_dssp             -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred             cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence            22446788999988875  4456899999999999999988886555544566788889999988888774433222111


Q ss_pred             ccceeeeEEe----EEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE--eeEEEEecCCCeE
Q psy11885        177 SSLKFQTRCI----KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP--VNAISFHQEYNTF  250 (327)
Q Consensus       177 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~--v~~v~~spd~~~l  250 (327)
                      .........+    .....+..++.-+.+|.+.-  .+.+............-.-.+ ..+.+.|  -.-+++|+..+.|
T Consensus       176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~--~dlsg~~~~~~~~~~~~t~~e-~~~~WrPGG~Q~~A~~~~~~rl  252 (342)
T PF06433_consen  176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYS--ADLSGDSAKFGKPWSLLTDAE-KADGWRPGGWQLIAYHAASGRL  252 (342)
T ss_dssp             EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEE--EEETTSSEEEEEEEESS-HHH-HHTTEEE-SSS-EEEETTTTEE
T ss_pred             cccCCCCcccccccceECCCCeEEEEecCCEEEE--EeccCCcccccCcccccCccc-cccCcCCcceeeeeeccccCeE
Confidence            1000000000    00111122333344444322  111111000000000000000 0001111  2347888766555


Q ss_pred             EEe-------cC-C--CeEEEEeCCCceeeeecCcCCcceEEEEECCCCC-EEEEEE
Q psy11885        251 ATG-------GS-D--GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGN-VLAIAC  296 (327)
Q Consensus       251 asg-------s~-d--g~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~-~la~~~  296 (327)
                      .+-       +. |  ..|.++|+.+++++..+.. +.++.+|+.|.|.+ +|.+.+
T Consensus       253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~  308 (342)
T PF06433_consen  253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALS  308 (342)
T ss_dssp             EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEE
T ss_pred             EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEc
Confidence            432       11 2  2588889999999988864 34688999999988 443333

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1008|consensus

Probab=97.16  E-value=0.00014  Score=66.44  Aligned_cols=155  Identities=16%  Similarity=0.297  Sum_probs=97.5

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEE----ECCCcEEEEECCCCe--E---EEEec-CCCceeeEEEe-CCceEEEEecCCcE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLAS----SWDCNVSLYDITNNN--L---RLKYA-HSDPVLDCCFQ-DAVHSFSGGLDCTL   80 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~----~~d~~i~iwd~~~~~--~---~~~~~-h~~~v~~~~~~-~~~~~~sgs~Dg~i   80 (327)
                      ..+...-++++|++-+...||+|    -.|..+.|||+.++-  .   ..+.+ .-....++||- +...+++|.....+
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~  178 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV  178 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence            34445678999998655667765    235689999998762  1   11112 22345577874 66677899988899


Q ss_pred             EEEEcCCCceeeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEe-CCCC-ceeeeee-----CCCcEEEEecCCCe--
Q psy11885         81 KMFDFNTQTETVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWD-PRSS-RCVGNYT-----QPDKVFTMSLCGEK--  150 (327)
Q Consensus        81 ~vwd~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwd-l~~~-~~~~~~~-----~~~~~~~~~~~~~~--  150 (327)
                      .++|++........-.+..+..+..+| .++++.+-. |+.|-+|| .+.- +++..+.     .+...+.+.+++.+  
T Consensus       179 ~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg  257 (783)
T KOG1008|consen  179 HIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG  257 (783)
T ss_pred             hhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc
Confidence            999987443222112234566677777 677777755 99999999 3332 2332221     23346667666543  


Q ss_pred             -EEEEeC-CCeEEEEECCC
Q psy11885        151 -FVVGTA-GRKVCIWDLRN  167 (327)
Q Consensus       151 -~~~~~~-d~~v~iwD~~~  167 (327)
                       +++.+. .++|+++|++.
T Consensus       258 lla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  258 LLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             hhhhhccCcceEEEecccc
Confidence             555554 46899999874

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.14  E-value=0.16  Score=44.65  Aligned_cols=134  Identities=15%  Similarity=0.162  Sum_probs=76.9

Q ss_pred             CeEEEEeCCCC-----c--eeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeC
Q psy11885        119 TSVKMWDPRSS-----R--CVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPN  191 (327)
Q Consensus       119 ~~i~lwdl~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (327)
                      |+|.++++...     +  .+.....++.+.++..-+..+++ +.++.|.+|++...+.+........+....++  ...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl--~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSL--SVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEE--EEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEE-eecCEEEEEEccCcccchhhheecceEEEEEE--ecc
Confidence            88999998874     2  23334456677887776777544 45689999999876522111111122222333  333


Q ss_pred             CCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885        192 KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       192 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~  265 (327)
                      ++.++++.......+..|+....  .+...-+..        ....+.++.|-++++.++.+..+|.+.++...
T Consensus       139 ~~~I~vgD~~~sv~~~~~~~~~~--~l~~va~d~--------~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  139 KNYILVGDAMKSVSLLRYDEENN--KLILVARDY--------QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TTEEEEEESSSSEEEEEEETTTE---EEEEEEES--------S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ccEEEEEEcccCEEEEEEEccCC--EEEEEEecC--------CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            55777777777776665554221  111100000        01146778887677799999999999999765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00320 WD40 WD40 repeats

Probab=97.12  E-value=0.00066  Score=37.82  Aligned_cols=27  Identities=30%  Similarity=0.781  Sum_probs=25.1

Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEe
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd  263 (327)
                      .+.++.|+|+++.+++++.|+.+++|+
T Consensus        14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       14 PVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            588999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395|consensus

Probab=97.05  E-value=0.0094  Score=53.90  Aligned_cols=133  Identities=14%  Similarity=0.233  Sum_probs=82.3

Q ss_pred             EEEEECCCeEEEEeCCCCceeeeeeCCCc--EEEEecC-------CCeEEEEeCCCeEEEEECCCCccceeeecccceee
Q psy11885        112 ILTGSWDTSVKMWDPRSSRCVGNYTQPDK--VFTMSLC-------GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQ  182 (327)
Q Consensus       112 l~sgs~d~~i~lwdl~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~  182 (327)
                      +.++.....|.-.|++.|+.+.++.....  ...+.+.       ...-++|-.++.|.-||+|-...            
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~------------  416 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK------------  416 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc------------
Confidence            34556667788889999998877765433  2233332       22346677888999999873211            


Q ss_pred             eEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEE
Q psy11885        183 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW  262 (327)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iW  262 (327)
                       +.++                     |.-+            |...     .-....|.+-..+ .++|+||.+|-||+|
T Consensus       417 -~kl~---------------------~~q~------------kqy~-----~k~nFsc~aTT~s-G~IvvgS~~GdIRLY  456 (644)
T KOG2395|consen  417 -NKLA---------------------VVQS------------KQYS-----TKNNFSCFATTES-GYIVVGSLKGDIRLY  456 (644)
T ss_pred             -ceee---------------------eeec------------cccc-----cccccceeeecCC-ceEEEeecCCcEEee
Confidence             0000                     0000            0000     0001233333333 489999999999999


Q ss_pred             eCCCceee-eecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        263 DGFNKKRL-CQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       263 d~~~~~~~-~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      |- .+++- ..+.+...+|..|..+.||++|...|.
T Consensus       457 dr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  457 DR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             hh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence            96 44443 346777889999999999999988775

>KOG2444|consensus

Probab=97.03  E-value=0.002  Score=51.91  Aligned_cols=100  Identities=13%  Similarity=0.212  Sum_probs=61.0

Q ss_pred             CcEEEEEECCCcEEEEECCCC-eEEEEecCCCceeeEEEe---CCceEEEEecCCcEEEEEcCCCcee-eeecCC-ccEE
Q psy11885         28 NQFLLASSWDCNVSLYDITNN-NLRLKYAHSDPVLDCCFQ---DAVHSFSGGLDCTLKMFDFNTQTET-VIGTHD-QPIR  101 (327)
Q Consensus        28 ~~~l~s~~~d~~i~iwd~~~~-~~~~~~~h~~~v~~~~~~---~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~-~~V~  101 (327)
                      ..-|+.|+.||.|.+|+.+.. .....+........+.++   ++...++++.||.||.|++..++.. ....|+ .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            346888999999999998732 222222222233344444   4457789999999999998766543 344565 4444


Q ss_pred             EEEEeCCCCEEEEE--ECCCeEEEEeCC
Q psy11885        102 AVEYSDEVNCILTG--SWDTSVKMWDPR  127 (327)
Q Consensus       102 ~l~~~~~~~~l~sg--s~d~~i~lwdl~  127 (327)
                      .+..+..+..+.++  |.|..++.|++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            44444444555555  555555556554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.00  E-value=0.24  Score=45.13  Aligned_cols=47  Identities=17%  Similarity=0.351  Sum_probs=33.7

Q ss_pred             eEEEEeCCCCceeeeeeC-CCcEEEEecC-CCeEEEEeCCCeEEEEECCC
Q psy11885        120 SVKMWDPRSSRCVGNYTQ-PDKVFTMSLC-GEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus       120 ~i~lwdl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~d~~v~iwD~~~  167 (327)
                      .|++|+.. |+.+..+.- .+.+..+.+. .+.+++...||.++++|+..
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence            58888864 555555432 2566676665 55788899999999999864

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4640|consensus

Probab=96.95  E-value=0.0067  Score=55.83  Aligned_cols=75  Identities=9%  Similarity=0.045  Sum_probs=56.6

Q ss_pred             eeeEEE-eCCceEEEEecCCcEEEEEcCCCceeeeecCCccEE-EEEEeCCCCEEEEEECCCeEEEEeCCCCceeee
Q psy11885         60 VLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIR-AVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN  134 (327)
Q Consensus        60 v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~  134 (327)
                      +..+.| +.-..+|.+..+|.|-+..++-.+...++.|+.+++ +++|.|||+.|+.|-.||+|++-|.+++..+..
T Consensus        23 i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             eEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            444555 345566777778877777776555555565666666 999999999999999999999999998765544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.95  E-value=0.07  Score=48.85  Aligned_cols=139  Identities=16%  Similarity=0.156  Sum_probs=78.2

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEE-EcCCCceeee
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMF-DFNTQTETVI   93 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vw-d~~~~~~~~~   93 (327)
                      +-..+.++++|+ ++++++++ ||...|+.....+... .   +.....+|...+..+.-....+|+++ +++......+
T Consensus        32 ~~~p~~ls~npn-gr~v~V~g-~geY~iyt~~~~r~k~-~---G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   32 EIYPQSLSHNPN-GRFVLVCG-DGEYEIYTALAWRNKA-F---GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             SS--SEEEE-TT-SSEEEEEE-TTEEEEEETTTTEEEE-E---EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT---
T ss_pred             CcCCeeEEECCC-CCEEEEEc-CCEEEEEEccCCcccc-c---CceeEEEEecCccEEEEECCCeEEEEEcCccccceEE
Confidence            345789999995 57777754 8888898854444322 1   33456778656666666668889996 3322221112


Q ss_pred             ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         94 GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVFTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      . ....+..+..   |..|+..+.+ .|.+||+++++.+..+..+. ..+.++.+++.++..+.+ .+.|++.
T Consensus       106 ~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  106 K-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             ---SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             c-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            1 1123455543   7767666654 89999999999999988775 566777778888877655 5666553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.80  E-value=0.25  Score=41.49  Aligned_cols=198  Identities=9%  Similarity=0.126  Sum_probs=91.8

Q ss_pred             eecCCccEEEEEEeCCCCEE-EEEECCCeEEEEeCCCCceeeeeeCC--CcEEEEecC-CCeEEEEeC-CCeEEEEECCC
Q psy11885         93 IGTHDQPIRAVEYSDEVNCI-LTGSWDTSVKMWDPRSSRCVGNYTQP--DKVFTMSLC-GEKFVVGTA-GRKVCIWDLRN  167 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l-~sgs~d~~i~lwdl~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~-d~~v~iwD~~~  167 (327)
                      +.+-...+..|+|.|+.+.| ++....+.|.-.++ +|+.+..+...  ...-.+..- +..++...+ ++.+.++++..
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            44445569999999986655 45566788888886 47777766532  223333332 345555553 77888888843


Q ss_pred             Cccceeee---ccccee------eeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccce-eeeeeeeeccCCeeeEEE
Q psy11885        168 MGYIMQRR---ESSLKF------QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK-YAFKCHRIKEDGIEKIYP  237 (327)
Q Consensus       168 ~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~h~~~~~~~~~~~~  237 (327)
                      ........   ...+..      ....+++.+..+.++++--.....++-+.......... .....+.  .. ......
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~d  172 (248)
T PF06977_consen   96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD--DD-KLFVRD  172 (248)
T ss_dssp             --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH---H-T--SS-
T ss_pred             cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc--cc-cceecc
Confidence            22111110   001111      01345566666666665444444444433210000000 0000000  00 001124


Q ss_pred             eeEEEEecCC-CeEEEecCCCeEEEEeCCCceeeeec--Cc-CC------cceEEEEECCCCCEEEEE
Q psy11885        238 VNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQF--HR-YD------TGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       238 v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~~~~~~--~~-~~------~~v~~l~fspdg~~la~~  295 (327)
                      +.+++++|.. .+++-..++..+.+.| .+|+.+..+  .+ ..      ..--.|+|.|+|.+.+++
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            6789999865 5566777889999999 566655433  22 10      123579999999888777

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3617|consensus

Probab=96.77  E-value=0.0023  Score=60.69  Aligned_cols=97  Identities=20%  Similarity=0.301  Sum_probs=69.1

Q ss_pred             eEEeeCCCceEEEeec----CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEE
Q psy11885        186 IKCFPNKQGYVLSSIE----GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI  261 (327)
Q Consensus       186 ~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~i  261 (327)
                      +.++|..+.+++++..    |.+.| +.+++.+...+.+.+              .+.+++|||..-.||+|=+-|.+.+
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtI-fadtGEPqr~Vt~P~--------------hatSLCWHpe~~vLa~gwe~g~~~v   85 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTI-FADTGEPQRDVTYPV--------------HATSLCWHPEEFVLAQGWEMGVSDV   85 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEE-EecCCCCCcccccce--------------ehhhhccChHHHHHhhccccceeEE
Confidence            4566777777666432    33333 455555433333322              2467999999988999988999999


Q ss_pred             EeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        262 WDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       262 Wd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      |...+.+.-.....|..+|..|.|||+|..|.++..
T Consensus        86 ~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~  121 (1416)
T KOG3617|consen   86 QKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDN  121 (1416)
T ss_pred             EecCCceeeeeccCCCCCceeEEecCCCCeEEEcCC
Confidence            998776654455678889999999999999999854

>KOG4649|consensus

Probab=96.75  E-value=0.22  Score=41.40  Aligned_cols=116  Identities=15%  Similarity=0.072  Sum_probs=81.2

Q ss_pred             ecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecCCccEEE-
Q psy11885         24 APNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRA-  102 (327)
Q Consensus        24 s~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~-  102 (327)
                      -++...+++.|+..+.+.--|..+|++.-.......+-+-+..-+++++-|...|.+.+.+.+++....-..-...|.+ 
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~   98 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR   98 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence            3445568888999999999999888865433334444443333467789999999999999998854322211222322 


Q ss_pred             EEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC
Q psy11885        103 VEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD  139 (327)
Q Consensus       103 l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~  139 (327)
                      ....+++..+..|+.|+.....|.++..|+...+-++
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG  135 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG  135 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence            2346788999999999999999999988887755433

>KOG3621|consensus

Probab=96.71  E-value=0.018  Score=53.76  Aligned_cols=147  Identities=14%  Similarity=0.157  Sum_probs=85.2

Q ss_pred             EEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccccee
Q psy11885        141 VFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY  220 (327)
Q Consensus       141 ~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  220 (327)
                      ..+++..++.++.|+..|.|.+|+--.+.......+.. .........+++....++++..+.+.++....+.. ....+
T Consensus        38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~-~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-~~~~~  115 (726)
T KOG3621|consen   38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGA-TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-RDLDY  115 (726)
T ss_pred             EEEeecCCceEEEecccceEEEEecCchhhhcccccCc-cceEEEEEecchhHhhhhhcCCceEEeehhhccCC-Cccee
Confidence            34566667778888888888888754433222211111 11112233455555666677777777655443221 12222


Q ss_pred             eeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCc----eeeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885        221 AFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK----KRLCQFHRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       221 ~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~----~~~~~~~~~~~~v~~l~fspdg~~la~~~  296 (327)
                      .-.++..      |-..|+|++|++++..|.+|..-|+|..-.+...    -..+.+....+.|..|.+.. +.+|++.+
T Consensus       116 ~t~~d~~------~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl  188 (726)
T KOG3621|consen  116 VTPCDKS------HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTL  188 (726)
T ss_pred             ecccccc------CCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHhhh
Confidence            2222221      2235999999999999999999999988776651    01123334456788888864 56665553

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.63  E-value=0.0049  Score=36.99  Aligned_cols=33  Identities=27%  Similarity=0.404  Sum_probs=28.9

Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceee
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL  270 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~  270 (327)
                      .|.+++|+|....||.|+.+|.|.++.+ +++++
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            4789999999999999999999999987 55543

>KOG1897|consensus

Probab=96.62  E-value=0.81  Score=45.02  Aligned_cols=115  Identities=15%  Similarity=0.145  Sum_probs=65.1

Q ss_pred             CCCCCCeeEEEEecC--CCc---EEEEEECCCcEEEE-ECCCCeEEEEecC-----CCceeeEEEe-CCceEEEEecCCc
Q psy11885         12 SPPEDGITAVKFAPN--SNQ---FLLASSWDCNVSLY-DITNNNLRLKYAH-----SDPVLDCCFQ-DAVHSFSGGLDCT   79 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~--~~~---~l~s~~~d~~i~iw-d~~~~~~~~~~~h-----~~~v~~~~~~-~~~~~~sgs~Dg~   79 (327)
                      ..-+.+|-|+.++|.  ++.   +++.|.++..+.+- -..+..+......     +..+...++- +..+++++..||.
T Consensus       527 ~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~  606 (1096)
T KOG1897|consen  527 KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGA  606 (1096)
T ss_pred             heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCce
Confidence            345678999999985  333   78889887765444 3434443332211     1234444553 5789999999999


Q ss_pred             EEEEEcCCCceeee-----ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeC
Q psy11885         80 LKMFDFNTQTETVI-----GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP  126 (327)
Q Consensus        80 i~vwd~~~~~~~~~-----~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl  126 (327)
                      +..+.++.+.....     .--..|+.--.|+..+..-+-+-.|+-.-+|.-
T Consensus       607 l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~  658 (1096)
T KOG1897|consen  607 LLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS  658 (1096)
T ss_pred             EEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec
Confidence            99876654332110     011345555556554443333344555556654

>KOG2444|consensus

Probab=96.52  E-value=0.0054  Score=49.55  Aligned_cols=134  Identities=12%  Similarity=0.153  Sum_probs=73.2

Q ss_pred             EEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce--ee-eecCCccEEEEEE
Q psy11885         31 LLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE--TV-IGTHDQPIRAVEY  105 (327)
Q Consensus        31 l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~--~~-~~~h~~~V~~l~~  105 (327)
                      |...+.|+.++=+++..-++....  .|...  ....--+..++.|+.+|.|.+|..+....  .. ...-+.....+.-
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc--eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            444566788777777554422111  12111  00112356788999999999997762211  11 1111222223333


Q ss_pred             eCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC----cEEEEecCCCeEEEE--eCCCeEEEEECC
Q psy11885        106 SDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD----KVFTMSLCGEKFVVG--TAGRKVCIWDLR  166 (327)
Q Consensus       106 ~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~d~~v~iwD~~  166 (327)
                      -.++.+..++..|+.||.|+..-++.+....++.    ....+.-++..+..+  +.|..++.|++.
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            3556688899999999999988776554433322    222333344444444  556666666664

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.52  E-value=0.72  Score=43.18  Aligned_cols=140  Identities=14%  Similarity=0.167  Sum_probs=84.8

Q ss_pred             EEEEEECCCcEEEEECCCCeEEEEecCCCc-------ee--eEEEeCCceEEEEecCCcEEEEEcCCCceeeeecCCcc-
Q psy11885         30 FLLASSWDCNVSLYDITNNNLRLKYAHSDP-------VL--DCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQP-   99 (327)
Q Consensus        30 ~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~-------v~--~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~-   99 (327)
                      .+..++.++.+.-.|..+++..-.+.....       +.  .+++.++..++.++.++.|..+|.++++......-... 
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~  142 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQV  142 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCc
Confidence            466677789999999999885533321111       10  11222336888888999999999998876532211111 


Q ss_pred             -----EE-EEEEeCCCCEEEEEE---------CCCeEEEEeCCCCceeeeeeCCCc------------------------
Q psy11885        100 -----IR-AVEYSDEVNCILTGS---------WDTSVKMWDPRSSRCVGNYTQPDK------------------------  140 (327)
Q Consensus       100 -----V~-~l~~~~~~~~l~sgs---------~d~~i~lwdl~~~~~~~~~~~~~~------------------------  140 (327)
                           +. ...+..  ..++.++         .++.+..+|..+++.++.+.....                        
T Consensus       143 ~~~~~i~ssP~v~~--~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~  220 (488)
T cd00216         143 PPGYTMTGAPTIVK--KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA  220 (488)
T ss_pred             CcceEecCCCEEEC--CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence                 11 112222  4455554         368899999999998877643110                        


Q ss_pred             EEEEecCCCeEEEEeCCC------------------eEEEEECCCCccc
Q psy11885        141 VFTMSLCGEKFVVGTAGR------------------KVCIWDLRNMGYI  171 (327)
Q Consensus       141 ~~~~~~~~~~~~~~~~d~------------------~v~iwD~~~~~~~  171 (327)
                      ...+...+..+++++.++                  .|.-+|.++++..
T Consensus       221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            012223356677777654                  6888898887754

The alignment model contains an 8-bladed beta-propeller.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.43  E-value=0.51  Score=42.50  Aligned_cols=231  Identities=13%  Similarity=0.142  Sum_probs=93.5

Q ss_pred             CCceEEEEe-cCCcEEEEEcCCCc--e---eeeec---CC--c--cEEEEEEeCCCCEEEEE--ECC----CeEEEEeCC
Q psy11885         67 DAVHSFSGG-LDCTLKMFDFNTQT--E---TVIGT---HD--Q--PIRAVEYSDEVNCILTG--SWD----TSVKMWDPR  127 (327)
Q Consensus        67 ~~~~~~sgs-~Dg~i~vwd~~~~~--~---~~~~~---h~--~--~V~~l~~~~~~~~l~sg--s~d----~~i~lwdl~  127 (327)
                      +..+|+..+ ..+.|.+.|+.+..  +   +++..   +.  +  .-..+---|+|+.++|+  ..+    |.+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345666655 67889999987542  1   12221   11  1  01111112788888775  222    467788877


Q ss_pred             CCceeeeeeCCC--cE----EEEecCCCeEEEEe--------------------CCCeEEEEECCCCccceeeeccccee
Q psy11885        128 SSRCVGNYTQPD--KV----FTMSLCGEKFVVGT--------------------AGRKVCIWDLRNMGYIMQRRESSLKF  181 (327)
Q Consensus       128 ~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~--------------------~d~~v~iwD~~~~~~~~~~~~~~~~~  181 (327)
                      +.+....+....  ..    +-+.+-.+.+++..                    ..+++.+||+.+.+.....-......
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            777666554321  11    22333344555543                    25689999999876543222221111


Q ss_pred             eeEEeEEeeCC---CceEEEeecCeEEEEEccCCccccc-ceeeeeeeeeccCCeee-------E-EEeeEEEEecCCCe
Q psy11885        182 QTRCIKCFPNK---QGYVLSSIEGRAAVEYLDTGPEMQK-MKYAFKCHRIKEDGIEK-------I-YPVNAISFHQEYNT  249 (327)
Q Consensus       182 ~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~h~~~~~~~~~-------~-~~v~~v~~spd~~~  249 (327)
                      .+-.+++..+.   .+++.+.....+..++-+....+.- ....+.........+..       + .-++.|..|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            22345555443   2444444444444333222222211 11111111111111100       0 12578999999999


Q ss_pred             EEEecC-CCeEEEEeCCCc---eeeeecC----------------cCCcceEEEEECCCCCEEEEEEc
Q psy11885        250 FATGGS-DGYVNIWDGFNK---KRLCQFH----------------RYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       250 lasgs~-dg~i~iWd~~~~---~~~~~~~----------------~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      |..... +|.||-||+.+.   +++.++.                ...+...-|..|.||+.|-...+
T Consensus       326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            876554 799999998764   3333321                11123367899999999987765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.33  E-value=0.25  Score=45.12  Aligned_cols=186  Identities=11%  Similarity=0.063  Sum_probs=102.2

Q ss_pred             CccEEEEEEeCCCCEEEEE---ECC-CeEEEEeCCCCceeee--eeCCCcEEEEecCCCeEEEEe-CCCe--EEEEECCC
Q psy11885         97 DQPIRAVEYSDEVNCILTG---SWD-TSVKMWDPRSSRCVGN--YTQPDKVFTMSLCGEKFVVGT-AGRK--VCIWDLRN  167 (327)
Q Consensus        97 ~~~V~~l~~~~~~~~l~sg---s~d-~~i~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~d~~--v~iwD~~~  167 (327)
                      ...+..-+|+++++.++..   ... ..+.++|+++++....  +......-.++++|..++... .|+.  |.+.|+.+
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~  271 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG  271 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence            3456667899998876544   222 4688999988764433  334445567788888766654 4554  66667765


Q ss_pred             CccceeeecccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccc-cceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQ-KMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      ....  ..... ......=.++|+++.++..+. .|...|+..+...... ++.....             .-..-.++|
T Consensus       272 ~~~~--~Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-------------~~~~p~~Sp  335 (425)
T COG0823         272 KNLP--RLTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-------------GNSNPVWSP  335 (425)
T ss_pred             Ccce--ecccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-------------CCcCccCCC
Confidence            4421  11110 000112245677777665544 4555565555433211 1111000             011457899


Q ss_pred             CCCeEEEecC-CCe--EEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        246 EYNTFATGGS-DGY--VNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       246 d~~~lasgs~-dg~--i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      ||++|+..+. +|.  |.+.|..++.....+. .......-.|+|+|+.+...+...
T Consensus       336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         336 DGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             CCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence            9999986553 344  6666665554322221 122234568889999888876654

>KOG4640|consensus

Probab=96.31  E-value=0.028  Score=51.92  Aligned_cols=90  Identities=13%  Similarity=0.167  Sum_probs=69.0

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCcee-eEEE-eCCceEEEEecCCcEEEEEcCCCceee-
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVL-DCCF-QDAVHSFSGGLDCTLKMFDFNTQTETV-   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~-~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~~-   92 (327)
                      -.|--+.|+|. -.++|.+..+|.+.+.-++-.++-....|..++. +++| ++|+.++.|-.||+|++-|++++.... 
T Consensus        21 ~~i~~~ewnP~-~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPK-MDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCc-cchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            35778999995 5689999999999999988555555444777777 9999 699999999999999999998875432 


Q ss_pred             -eecCCccEEEEEEe
Q psy11885         93 -IGTHDQPIRAVEYS  106 (327)
Q Consensus        93 -~~~h~~~V~~l~~~  106 (327)
                       ......+|...-|+
T Consensus       100 ~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  100 FLFSVETDISKGIWD  114 (665)
T ss_pred             cccccccchheeecc
Confidence             23334556666665

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.14  E-value=0.024  Score=33.96  Aligned_cols=33  Identities=12%  Similarity=0.225  Sum_probs=29.1

Q ss_pred             CccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885         97 DQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR  130 (327)
Q Consensus        97 ~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~  130 (327)
                      ...|..++|+|..++|+.|+.||.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            356999999999999999999999999998 443

>KOG4441|consensus

Probab=96.02  E-value=1.3  Score=42.22  Aligned_cols=132  Identities=15%  Similarity=0.189  Sum_probs=70.3

Q ss_pred             CCcEEEEEECC------CcEEEEECCCCeEEEEe--cCCCceeeEEEeCCceEEEEecC-C-----cEEEEEcCCCceee
Q psy11885         27 SNQFLLASSWD------CNVSLYDITNNNLRLKY--AHSDPVLDCCFQDAVHSFSGGLD-C-----TLKMFDFNTQTETV   92 (327)
Q Consensus        27 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~~~~~~~sgs~D-g-----~i~vwd~~~~~~~~   92 (327)
                      .+.+++.||.+      ..+..+|..+++-....  .....-.+++..++...++||.| |     ++-.||..+++-..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            35677888887      46888888887533222  12223345566677777789888 3     45566666554221


Q ss_pred             eecCCccEEEEEE-eCCCCEEEEEECCC-----eEEEEeCCCCceeeeeeCCC---cEEEEecCCCeEEEEeCCC
Q psy11885         93 IGTHDQPIRAVEY-SDEVNCILTGSWDT-----SVKMWDPRSSRCVGNYTQPD---KVFTMSLCGEKFVVGTAGR  158 (327)
Q Consensus        93 ~~~h~~~V~~l~~-~~~~~~l~sgs~d~-----~i~lwdl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~  158 (327)
                      ...-..+=..+.. .-+|...+.||.||     ++..||.++.+....-....   ........|...++|+.++
T Consensus       364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence            1111111111111 12566778888886     46778887766432211111   1122334455566666443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.86  E-value=1.3  Score=39.95  Aligned_cols=151  Identities=17%  Similarity=0.163  Sum_probs=96.7

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEE-eCCceEEEEec---CCcEEEEEcCCCceee-e
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGL---DCTLKMFDFNTQTETV-I   93 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~-~~~~~~~sgs~---Dg~i~vwd~~~~~~~~-~   93 (327)
                      ..++.++.+.+.+++...++.|.+.|...........-......+++ .++..++.+..   ++++-+.|-.++.... .
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~  156 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI  156 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence            46788887666677777789999999776664443332224456666 45666664444   6777778777665432 2


Q ss_pred             ecCCccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCCCceee-e----eeC--CCcEEEEecCCCeEEEEeCC---CeEEE
Q psy11885         94 GTHDQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRSSRCVG-N----YTQ--PDKVFTMSLCGEKFVVGTAG---RKVCI  162 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~~~~~~-~----~~~--~~~~~~~~~~~~~~~~~~~d---~~v~i  162 (327)
                      ..-..+ ..++++|+|+.++... .+++|.+.|.+...... .    ...  ......+.+++..+.+.-..   +.+..
T Consensus       157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~  235 (381)
T COG3391         157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK  235 (381)
T ss_pred             ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence            222344 7899999999777664 78999999987765552 1    111  11245667778765554332   58888


Q ss_pred             EECCCCcc
Q psy11885        163 WDLRNMGY  170 (327)
Q Consensus       163 wD~~~~~~  170 (327)
                      .|..+...
T Consensus       236 id~~~~~v  243 (381)
T COG3391         236 IDTATGNV  243 (381)
T ss_pred             EeCCCceE
Confidence            88876543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.80  E-value=1.1  Score=38.61  Aligned_cols=185  Identities=15%  Similarity=0.166  Sum_probs=96.1

Q ss_pred             EEEEEeC-CCCEEEEEECCCe-EEEEeCCCCceeeeeeCCC-c----EEEEecCCCeEEEE-----eCCCeEEEEECC-C
Q psy11885        101 RAVEYSD-EVNCILTGSWDTS-VKMWDPRSSRCVGNYTQPD-K----VFTMSLCGEKFVVG-----TAGRKVCIWDLR-N  167 (327)
Q Consensus       101 ~~l~~~~-~~~~l~sgs~d~~-i~lwdl~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~-----~~d~~v~iwD~~-~  167 (327)
                      ..++.+| .+..++-+-.-|+ ..+||.++++..+.+..+. .    --.++++|..|++.     ...|.|-|||.+ +
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            3456667 4455556655554 5789999998877665432 2    23577888887764     345789999998 3


Q ss_pred             CccceeeecccceeeeEEeEEeeCCCceEEEeec-------CeEEE---------EEccCCcccccceeee--eeeeecc
Q psy11885        168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE-------GRAAV---------EYLDTGPEMQKMKYAF--KCHRIKE  229 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i---------~~~~~~~~~~~~~~~~--~~h~~~~  229 (327)
                      .+.+-......+  -+..+.+.|+++.++++...       |...+         .++|........+..+  ..|    
T Consensus        88 ~~ri~E~~s~GI--GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~----  161 (305)
T PF07433_consen   88 YRRIGEFPSHGI--GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH----  161 (305)
T ss_pred             cEEEeEecCCCc--ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc----
Confidence            332221111111  12334566777666665322       11111         1111111000000011  111    


Q ss_pred             CCeeeEEEeeEEEEecCCCeEEEecCCC-------eEEEEeCCCceeeeec-------CcCCcceEEEEECCCCCEEEEE
Q psy11885        230 DGIEKIYPVNAISFHQEYNTFATGGSDG-------YVNIWDGFNKKRLCQF-------HRYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       230 ~~~~~~~~v~~v~~spd~~~lasgs~dg-------~i~iWd~~~~~~~~~~-------~~~~~~v~~l~fspdg~~la~~  295 (327)
                           .-.+..++++++|..++..=..|       -+-+++...  .+..+       .....-+-+|+|+++|.++|++
T Consensus       162 -----~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t  234 (305)
T PF07433_consen  162 -----QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT  234 (305)
T ss_pred             -----ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence                 12467788888876555432222       234443222  12111       1223347799999999999998


Q ss_pred             Ecc
Q psy11885        296 CSY  298 (327)
Q Consensus       296 ~~~  298 (327)
                      |.-
T Consensus       235 sPr  237 (305)
T PF07433_consen  235 SPR  237 (305)
T ss_pred             CCC
Confidence            753

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.55  E-value=1.8  Score=39.25  Aligned_cols=156  Identities=13%  Similarity=0.128  Sum_probs=87.5

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe---c------CCCceeeEEEe------CC---ceEEEE
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY---A------HSDPVLDCCFQ------DA---VHSFSG   74 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~------h~~~v~~~~~~------~~---~~~~sg   74 (327)
                      ...+.|++++.|.-  .|+|+|..+|.+.|-|+.+..++...   .      ....+.++.|.      ++   ..++.|
T Consensus        84 ~~~g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   84 AKQGPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             --S-SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             ccCCcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            34689999999964  49999999999999999887765432   1      12246677663      22   366788


Q ss_pred             ecCCcEEEEEcCC--Cc-ee-----eeecCCccEEEEE-EeCC-C-------------------CEEEEEECCCeEEEEe
Q psy11885         75 GLDCTLKMFDFNT--QT-ET-----VIGTHDQPIRAVE-YSDE-V-------------------NCILTGSWDTSVKMWD  125 (327)
Q Consensus        75 s~Dg~i~vwd~~~--~~-~~-----~~~~h~~~V~~l~-~~~~-~-------------------~~l~sgs~d~~i~lwd  125 (327)
                      ...|.+.+|.+.-  +. ..     ....+.++|..+. ++.+ |                   .-++....+..+|++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            8899999998752  11 11     1224566766665 3222 1                   1244445578899999


Q ss_pred             CCCCceeeeeeCC-CcE--EEEe-----cCCCeEEEEeCCCeEEEEECCCCcc
Q psy11885        126 PRSSRCVGNYTQP-DKV--FTMS-----LCGEKFVVGTAGRKVCIWDLRNMGY  170 (327)
Q Consensus       126 l~~~~~~~~~~~~-~~~--~~~~-----~~~~~~~~~~~d~~v~iwD~~~~~~  170 (327)
                      +.+.+..+..... ..+  ..+.     ..+..|++-..+|.++++.+...+.
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke  294 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE  294 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence            9887765443321 111  1121     1244577778999999999887653

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.50  E-value=1.6  Score=38.33  Aligned_cols=129  Identities=14%  Similarity=0.206  Sum_probs=77.7

Q ss_pred             CcEEEEEcCCC-----ceeee--ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc-eeee--eeCCCcEEEEecC
Q psy11885         78 CTLKMFDFNTQ-----TETVI--GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR-CVGN--YTQPDKVFTMSLC  147 (327)
Q Consensus        78 g~i~vwd~~~~-----~~~~~--~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~-~~~~--~~~~~~~~~~~~~  147 (327)
                      |.|.++++...     +...+  ...+++|.+++-- . ..|+.+. .++|.+|++...+ ....  +..+..+.++...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~-~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-N-GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-T-TEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-C-CEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence            88999999874     22222  2457889999866 3 3444444 4899999998777 4332  3344567777777


Q ss_pred             CCeEEEEeCCCeEEEE--ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEcc
Q psy11885        148 GEKFVVGTAGRKVCIW--DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLD  210 (327)
Q Consensus       148 ~~~~~~~~~d~~v~iw--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  210 (327)
                      ++.+++|...+.+.++  +-...+.. .......+....++.+..+++.++++...+...+...+
T Consensus       139 ~~~I~vgD~~~sv~~~~~~~~~~~l~-~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  139 KNYILVGDAMKSVSLLRYDEENNKLI-LVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TTEEEEEESSSSEEEEEEETTTE-EE-EEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ccEEEEEEcccCEEEEEEEccCCEEE-EEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            8999999888888776  44222211 11111112233455566455677777777887765554

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.41  E-value=1.1  Score=41.26  Aligned_cols=131  Identities=12%  Similarity=0.162  Sum_probs=55.1

Q ss_pred             CcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeC-CceEEEEecCCcEEEEEcCCC------------ceeeee
Q psy11885         28 NQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQD-AVHSFSGGLDCTLKMFDFNTQ------------TETVIG   94 (327)
Q Consensus        28 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~-~~~~~sgs~Dg~i~vwd~~~~------------~~~~~~   94 (327)
                      +.+|+..+ ++.|.+||++++++....... +|..+.|++ +.+++-.+ +.++.+++.+..            ....+.
T Consensus       117 G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~  193 (443)
T PF04053_consen  117 GNLLGVKS-SDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIH  193 (443)
T ss_dssp             SSSEEEEE-TTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEE
T ss_pred             CcEEEEEC-CCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEe-CCeEEEEEecchhcccccccCchhceEEEE
Confidence            34555554 336888888777766555543 366777763 44444444 446666654433            122222


Q ss_pred             cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc--eeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECC
Q psy11885         95 THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR--CVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        95 ~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~  166 (327)
                      .....|.+.+|..+  .++-.+.. .|+-  +-.|+  .+..+..+..+..+.+..+++.....++.|..+.+.
T Consensus       194 E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  194 EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            22455666777655  33322322 4443  22232  233333333333444434566666666666666553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2079|consensus

Probab=95.30  E-value=0.064  Score=52.73  Aligned_cols=96  Identities=22%  Similarity=0.281  Sum_probs=67.2

Q ss_pred             cEEEEEECCCcEEEEECCCCeE--EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEE--
Q psy11885         29 QFLLASSWDCNVSLYDITNNNL--RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRA--  102 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~--~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~--  102 (327)
                      .+++.|+..|.+...|+.+.-.  ..-..-+++|.+++|+ ++..++.|-.+|.|.+||+..++. ..+..|..++..  
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            4677787778888888866421  2222345789999996 788888999999999999988654 445555544443  


Q ss_pred             -EEEeCCCCEEEEEECCCeEEEEeC
Q psy11885        103 -VEYSDEVNCILTGSWDTSVKMWDP  126 (327)
Q Consensus       103 -l~~~~~~~~l~sgs~d~~i~lwdl  126 (327)
                       +.+..++..++++...|.  +|.+
T Consensus       180 ~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCc--eEEE
Confidence             444456667888888786  5554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.14  E-value=0.25  Score=48.19  Aligned_cols=95  Identities=14%  Similarity=0.113  Sum_probs=67.5

Q ss_pred             EEEEECCCcEEEEECCCC--eEEEE----ecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEE
Q psy11885         31 LLASSWDCNVSLYDITNN--NLRLK----YAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAV  103 (327)
Q Consensus        31 l~s~~~d~~i~iwd~~~~--~~~~~----~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l  103 (327)
                      .+.|=.++.+..||..-.  ++...    +..+....|++-....+++.||.+|.||+||--..+. ..+++-..||..|
T Consensus       545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~i  624 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGI  624 (794)
T ss_pred             eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEE
Confidence            345556788999997642  33321    2223345566656778999999999999999544333 3466778999999


Q ss_pred             EEeCCCCEEEEEECCCeEEEEeC
Q psy11885        104 EYSDEVNCILTGSWDTSVKMWDP  126 (327)
Q Consensus       104 ~~~~~~~~l~sgs~d~~i~lwdl  126 (327)
                      +.+.||++|+.. .+..|.|++.
T Consensus       625 Dvt~DGkwilaT-c~tyLlLi~t  646 (794)
T PF08553_consen  625 DVTADGKWILAT-CKTYLLLIDT  646 (794)
T ss_pred             EecCCCcEEEEe-ecceEEEEEE
Confidence            999999988764 4567888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.04  E-value=0.098  Score=30.46  Aligned_cols=32  Identities=19%  Similarity=0.377  Sum_probs=26.4

Q ss_pred             CCeeEEEEecCCC--cEEEEEECCCcEEEEECCC
Q psy11885         16 DGITAVKFAPNSN--QFLLASSWDCNVSLYDITN   47 (327)
Q Consensus        16 ~~I~~i~fs~~~~--~~l~s~~~d~~i~iwd~~~   47 (327)
                      +.|++++|+|+..  .+|+.+-.-+.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998654  6888887779999999974

It contains a characteristic DLL sequence motif.

>KOG2395|consensus

Probab=95.01  E-value=0.81  Score=41.97  Aligned_cols=137  Identities=15%  Similarity=0.187  Sum_probs=84.9

Q ss_pred             CCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe---C-----CceEEEEecCCcEEEEEcCCCce---eeeec
Q psy11885         27 SNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ---D-----AVHSFSGGLDCTLKMFDFNTQTE---TVIGT   95 (327)
Q Consensus        27 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~---~-----~~~~~sgs~Dg~i~vwd~~~~~~---~~~~~   95 (327)
                      .+-+|.++.....++--|++.|++..-+...+.|..+.+.   +     ...-+.|=+|..|.-||.+-...   ...+.
T Consensus       345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~  424 (644)
T KOG2395|consen  345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS  424 (644)
T ss_pred             cceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence            3445556666778888899999988777644446555552   1     22345677899999999763222   22333


Q ss_pred             CC----ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceee----eeeCCCcEEEEecCCCeEEEEeCCCeEEEEECC
Q psy11885         96 HD----QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVG----NYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        96 h~----~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~  166 (327)
                      |.    ..-.|.+-..+ .+|+.||.+|.||+||- .+....    .+-.+...+.++.+|+.+ .|+.+..+-+-|++
T Consensus       425 kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwi-l~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  425 KQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWI-LATCKTYLLLIDTL  500 (644)
T ss_pred             cccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEE-EEecccEEEEEEEe
Confidence            32    23345554444 48999999999999996 433222    222333445666677654 45566677776654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.90  E-value=2.8  Score=37.86  Aligned_cols=229  Identities=14%  Similarity=0.101  Sum_probs=131.5

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC-CceeeEEE-eCCceEE-EEecCCcEEEEEcCCCceeee
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS-DPVLDCCF-QDAVHSF-SGGLDCTLKMFDFNTQTETVI   93 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~-~~v~~~~~-~~~~~~~-sgs~Dg~i~vwd~~~~~~~~~   93 (327)
                      ....+...|++.+.+++-.....+..-+...........-. .....++. ..+..++ +...++.|.+.|..+......
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            55667777765454454443335555555422222211111 11123344 3455444 444568999999776654322


Q ss_pred             ecCCccEEEEEEeCCCCEEEEEEC---CCeEEEEeCCCCceeeeeeCC--CcEEEEecCCCeEEEE-eCCCeEEEEECCC
Q psy11885         94 GTHDQPIRAVEYSDEVNCILTGSW---DTSVKMWDPRSSRCVGNYTQP--DKVFTMSLCGEKFVVG-TAGRKVCIWDLRN  167 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~~~l~sgs~---d~~i~lwdl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~d~~v~iwD~~~  167 (327)
                      ..-......++++++++.++.+..   ++++.+.|..+++.+......  ..-..+.+.|+.+++. ..++.|.+.|..+
T Consensus       112 ~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~  191 (381)
T COG3391         112 IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence            211224578899999988877655   789999999998887775432  2345677778866555 4678888888654


Q ss_pred             CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885        168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY  247 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~  247 (327)
                      ....   +              +..        ...     ...+.                       ....+.++|++
T Consensus       192 ~~v~---~--------------~~~--------~~~-----~~~~~-----------------------~P~~i~v~~~g  218 (381)
T COG3391         192 NSVV---R--------------GSV--------GSL-----VGVGT-----------------------GPAGIAVDPDG  218 (381)
T ss_pred             ccee---c--------------ccc--------ccc-----cccCC-----------------------CCceEEECCCC
Confidence            3210   0              000        000     00000                       12246778888


Q ss_pred             CeEEEecC---CCeEEEEeCCCceeeeecCcCCc-ceEEEEECCCCCEEEEEEcc
Q psy11885        248 NTFATGGS---DGYVNIWDGFNKKRLCQFHRYDT-GITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       248 ~~lasgs~---dg~i~iWd~~~~~~~~~~~~~~~-~v~~l~fspdg~~la~~~~~  298 (327)
                      ..+.+.-.   ++.+...|..++........... .-..++++|+|+.+-+...+
T Consensus       219 ~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~  273 (381)
T COG3391         219 NRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ  273 (381)
T ss_pred             CEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence            86554433   36899999888776654221112 33568999999988877444

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.81  E-value=0.55  Score=42.89  Aligned_cols=111  Identities=16%  Similarity=0.169  Sum_probs=64.0

Q ss_pred             eEEEEecCCCcEEEEEECCCc--EEEEECCCCeEEEEecCCCcee-eEEE-eCCceEE-EEecCCcEEEE--EcCCCcee
Q psy11885         19 TAVKFAPNSNQFLLASSWDCN--VSLYDITNNNLRLKYAHSDPVL-DCCF-QDAVHSF-SGGLDCTLKMF--DFNTQTET   91 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~h~~~v~-~~~~-~~~~~~~-sgs~Dg~i~vw--d~~~~~~~   91 (327)
                      ..-+|+|++.+++++...|+.  |.+.|+.+++... ..+...+. .=.| ++|..++ +.+..|.-.+|  +.+.+...
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~  319 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT  319 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence            456899987667777777775  5666777766443 33333332 2345 4777666 44555655555  55554443


Q ss_pred             eeecCCccEEEEEEeCCCCEEEEEEC-CCe--EEEEeCCCCc
Q psy11885         92 VIGTHDQPIRAVEYSDEVNCILTGSW-DTS--VKMWDPRSSR  130 (327)
Q Consensus        92 ~~~~h~~~V~~l~~~~~~~~l~sgs~-d~~--i~lwdl~~~~  130 (327)
                      .+......-..-.++|||++++..+. +|.  |.+.|++++.
T Consensus       320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            33222222225678999999887664 344  5666665554

>PHA02713 hypothetical protein; Provisional

Probab=94.80  E-value=3.9  Score=39.02  Aligned_cols=93  Identities=6%  Similarity=0.112  Sum_probs=47.3

Q ss_pred             cEEEEECCCCeEEEEecCCCce--eeEEEeCCceEEEEecC------CcEEEEEcCCCceeeeecCCccE--EEEEEeCC
Q psy11885         39 NVSLYDITNNNLRLKYAHSDPV--LDCCFQDAVHSFSGGLD------CTLKMFDFNTQTETVIGTHDQPI--RAVEYSDE  108 (327)
Q Consensus        39 ~i~iwd~~~~~~~~~~~h~~~v--~~~~~~~~~~~~sgs~D------g~i~vwd~~~~~~~~~~~h~~~V--~~l~~~~~  108 (327)
                      .+..||..+++-.....-..+.  .+++..++...+.||.+      ..+-.||..++.-..+..-..+-  .+++ .-+
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~  351 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-VID  351 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-EEC
Confidence            5778888877633222111111  23333466666677754      23566776655422221111111  1122 234


Q ss_pred             CCEEEEEECCC-----eEEEEeCCCCcee
Q psy11885        109 VNCILTGSWDT-----SVKMWDPRSSRCV  132 (327)
Q Consensus       109 ~~~l~sgs~d~-----~i~lwdl~~~~~~  132 (327)
                      ++..+.||.++     ++..||.++++..
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            56667777653     5888999877543

>KOG4649|consensus

Probab=94.65  E-value=2.3  Score=35.61  Aligned_cols=62  Identities=13%  Similarity=0.171  Sum_probs=45.0

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCce--eeEEEeCCceEEEEecCCcEEEEEcCCCce
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPV--LDCCFQDAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v--~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .+++.|.+.|.+++-+.++|+....+.--+.|  ...+-.++..++.|+-|++....|..+...
T Consensus        64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c  127 (354)
T KOG4649|consen   64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC  127 (354)
T ss_pred             CEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce
Confidence            57889999999999999999644333222233  333335778899999999999999876544

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.58  E-value=1.2  Score=42.27  Aligned_cols=99  Identities=10%  Similarity=0.039  Sum_probs=65.0

Q ss_pred             CCceEEEEecCCcEEEEEcCC----C-ceeeeecCCccEEEEEEeCCCCEEEEEEC-CCeEEEEeCCCCce---------
Q psy11885         67 DAVHSFSGGLDCTLKMFDFNT----Q-TETVIGTHDQPIRAVEYSDEVNCILTGSW-DTSVKMWDPRSSRC---------  131 (327)
Q Consensus        67 ~~~~~~sgs~Dg~i~vwd~~~----~-~~~~~~~h~~~V~~l~~~~~~~~l~sgs~-d~~i~lwdl~~~~~---------  131 (327)
                      ++...+.  .+++|.+.|..+    + .....-.-......++++|||++++.++. ++++-+.|+++.+.         
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence            4444443  267899999887    2 22222223345688999999998876654 89999999987552         


Q ss_pred             ---eeeeeC-CCc-EEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885        132 ---VGNYTQ-PDK-VFTMSLCGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus       132 ---~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~v~iwD~~~  167 (327)
                         +.+... ... ...++..|+...+...|..|-.||+..
T Consensus       365 ~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        365 DAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence               222222 111 345555666777788899999999864

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.56  E-value=2.9  Score=36.45  Aligned_cols=84  Identities=14%  Similarity=0.060  Sum_probs=51.9

Q ss_pred             eEEEEecCCCeEEEecCCC-eEEEEeCCCceeeeecCcCCcceEEEEEC-CCCCEEEEEEc-cccccCCCCCCCCCCcEE
Q psy11885        239 NAISFHQEYNTFATGGSDG-YVNIWDGFNKKRLCQFHRYDTGITSLCFS-YDGNVLAIACS-YNYELETPPDPIPPNNIF  315 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~dg-~i~iWd~~~~~~~~~~~~~~~~v~~l~fs-pdg~~la~~~~-~~~~~~~~~~~~~~~~~~  315 (327)
                      ..++...+|.+.+++-.+| .|.+|+.. ++.+..+......+++++|- |+.+.|.+.+. .+.. ..-...-.-..+|
T Consensus       216 DG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~~-~~~~~~~~~G~lf  293 (307)
T COG3386         216 DGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGMS-RMLTADPLGGGLF  293 (307)
T ss_pred             CceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCCC-ccccccccCceEE
Confidence            3466677888876555554 89999977 88888877665677888885 44555555543 3332 2111222456677


Q ss_pred             EEEcccccc
Q psy11885        316 IRHVTDQET  324 (327)
Q Consensus       316 ~~~~~~~~~  324 (327)
                      .+.+.-.|.
T Consensus       294 ~~~~~~~G~  302 (307)
T COG3386         294 SLRLEVKGL  302 (307)
T ss_pred             EEecccCCc
Confidence            777665543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.51  E-value=5.5  Score=39.43  Aligned_cols=109  Identities=11%  Similarity=0.048  Sum_probs=68.3

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCc---------eeeEEEe-----------------CCceEEEEecCCcEEE
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDP---------VLDCCFQ-----------------DAVHSFSGGLDCTLKM   82 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~---------v~~~~~~-----------------~~~~~~sgs~Dg~i~v   82 (327)
                      ..|..++.++.|.-.|..+|+.+-.+..+..         +..+.+.                 .+..++.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            3566777788999999999986655433222         1223332                 1237888888999999


Q ss_pred             EEcCCCceeeeecCCccEE-------------EEEEeC--CCCEEEEEEC----------CCeEEEEeCCCCceeeeeeC
Q psy11885         83 FDFNTQTETVIGTHDQPIR-------------AVEYSD--EVNCILTGSW----------DTSVKMWDPRSSRCVGNYTQ  137 (327)
Q Consensus        83 wd~~~~~~~~~~~h~~~V~-------------~l~~~~--~~~~l~sgs~----------d~~i~lwdl~~~~~~~~~~~  137 (327)
                      .|.++++...-...++.|.             .+.-.|  .+..++.|+.          +|.|+-+|.++|+.++.+..
T Consensus       275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~  354 (764)
T TIGR03074       275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP  354 (764)
T ss_pred             EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence            9988887653222222211             011111  1345666643          68899999999999888753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4499|consensus

Probab=94.34  E-value=2.5  Score=34.83  Aligned_cols=47  Identities=26%  Similarity=0.249  Sum_probs=39.1

Q ss_pred             EEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECC
Q psy11885        241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  287 (327)
Q Consensus       241 v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp  287 (327)
                      ++...+|.++++.-..++|...|..+|+.+..++-....|+|++|--
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            34455777888887889999999999999999887777899999963

>KOG2079|consensus

Probab=94.16  E-value=0.24  Score=48.93  Aligned_cols=74  Identities=19%  Similarity=0.358  Sum_probs=54.0

Q ss_pred             cCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEE----eCCceEEEEecCCcEEEEE
Q psy11885         10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCF----QDAVHSFSGGLDCTLKMFD   84 (327)
Q Consensus        10 ~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~----~~~~~~~sgs~Dg~i~vwd   84 (327)
                      +.....++|++++|+.+ +.+++.|=.+|.|.+||...+++ .....|..+...+-+    +++..++++..-|.  +|.
T Consensus       125 ~ne~v~~~Vtsvafn~d-g~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  125 QNERVQGPVTSVAFNQD-GSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             cCCccCCcceeeEecCC-CceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            45566789999999995 57888888899999999998774 445556655554433    45667888876676  666


Q ss_pred             cC
Q psy11885         85 FN   86 (327)
Q Consensus        85 ~~   86 (327)
                      +.
T Consensus       202 lv  203 (1206)
T KOG2079|consen  202 LV  203 (1206)
T ss_pred             EE
Confidence            43

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.13  E-value=1.6  Score=41.75  Aligned_cols=108  Identities=12%  Similarity=0.235  Sum_probs=72.8

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEE---eCCceEEEEecCCcEEEEEcC----
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCF---QDAVHSFSGGLDCTLKMFDFN----   86 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~---~~~~~~~sgs~Dg~i~vwd~~----   86 (327)
                      ...+.++-+. -++..++.+....+.|||...+.+....  ...+.|..+.|   ++++.+++.|..+.|.++--.    
T Consensus        30 ~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   30 SNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            3556666665 3344444444458999999988854433  44788999998   378889999999999998531    


Q ss_pred             -CCce-------eeeecCC-ccEEEEEEeCCCCEEEEEECCCeEEEEeC
Q psy11885         87 -TQTE-------TVIGTHD-QPIRAVEYSDEVNCILTGSWDTSVKMWDP  126 (327)
Q Consensus        87 -~~~~-------~~~~~h~-~~V~~l~~~~~~~~l~sgs~d~~i~lwdl  126 (327)
                       ...+       .-+..|+ .+|.+..|.++|..++.++  +.+.++|-
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence             1111       1133454 6899999999997655543  57888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.10  E-value=4.6  Score=36.90  Aligned_cols=48  Identities=13%  Similarity=0.265  Sum_probs=33.1

Q ss_pred             cEEEEEcCCCceeeee-cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC
Q psy11885         79 TLKMFDFNTQTETVIG-THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS  128 (327)
Q Consensus        79 ~i~vwd~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~  128 (327)
                      .|++|+........+. .+ +.+..+.|..+ ..|+.-..||+++++|+..
T Consensus        62 ~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEEECCCCCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence            3777766554332222 22 67999999875 4566778999999999863

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.86  E-value=3.5  Score=34.79  Aligned_cols=120  Identities=13%  Similarity=0.186  Sum_probs=74.0

Q ss_pred             eEEEEecCCCc--eeeEEE-eCCceEEEEecCC--cEEEEEcCCCceeeee--cCCccEEEEEEeCCCCEEEEEECCCeE
Q psy11885         49 NLRLKYAHSDP--VLDCCF-QDAVHSFSGGLDC--TLKMFDFNTQTETVIG--THDQPIRAVEYSDEVNCILTGSWDTSV  121 (327)
Q Consensus        49 ~~~~~~~h~~~--v~~~~~-~~~~~~~sgs~Dg--~i~vwd~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~sgs~d~~i  121 (327)
                      ++...+.|+..  ...+.| .++...-|.|.-|  .|+.+|+++++.....  .....--.++...+ +...---.++..
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~  112 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEE
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeE
Confidence            34455677644  345677 5666666887776  6888999988643211  11222233444432 222233557889


Q ss_pred             EEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCc
Q psy11885        122 KMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMG  169 (327)
Q Consensus       122 ~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~  169 (327)
                      .+||..+-+.+.++.-+..-..+..+++.++....+..+.++|.++++
T Consensus       113 f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~  160 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFK  160 (264)
T ss_dssp             EEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred             EEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccc
Confidence            999999999888888777777777888888888888899999987654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.59  E-value=3.9  Score=34.41  Aligned_cols=150  Identities=9%  Similarity=0.153  Sum_probs=84.2

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC--CceeeEEEe-CCceEEEEecCCcEEEEEcCCCc---
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS--DPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT---   89 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~--~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~---   89 (327)
                      +++..|+|.|+.+.++++....+.|...+.. |++.......  +-.-.+++. ++.++++--.++.+.++++....   
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~  100 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL  100 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence            4699999999777777778888888888875 5544433221  234566775 44455555568899999884321   


Q ss_pred             --e--e--eee---cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC---Cceeeee-----e-----C-CCcEEEEec
Q psy11885         90 --E--T--VIG---THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS---SRCVGNY-----T-----Q-PDKVFTMSL  146 (327)
Q Consensus        90 --~--~--~~~---~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~---~~~~~~~-----~-----~-~~~~~~~~~  146 (327)
                        .  .  .+.   .++..+-.|+|++.++.|+.+-.....+++.++.   ...+...     .     . .-....+.+
T Consensus       101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p  180 (248)
T PF06977_consen  101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP  180 (248)
T ss_dssp             -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred             chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence              1  1  111   2455688999999988888887777777776653   2111111     1     0 001223343


Q ss_pred             C-CCeEEEEeCCCeEEEEECC
Q psy11885        147 C-GEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus       147 ~-~~~~~~~~~d~~v~iwD~~  166 (327)
                      . ++.++.+..++.|-.+|..
T Consensus       181 ~t~~lliLS~es~~l~~~d~~  201 (248)
T PF06977_consen  181 RTGHLLILSDESRLLLELDRQ  201 (248)
T ss_dssp             TTTEEEEEETTTTEEEEE-TT
T ss_pred             CCCeEEEEECCCCeEEEECCC
Confidence            3 4456666677788888843

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.46  E-value=5  Score=35.23  Aligned_cols=154  Identities=14%  Similarity=0.106  Sum_probs=79.0

Q ss_pred             CEEEEEECCCeEEEEeCC-CCceeeeee----C-CCcEE---EEecCCCeEEEEeCCCeEEEEECCCCccceeeec----
Q psy11885        110 NCILTGSWDTSVKMWDPR-SSRCVGNYT----Q-PDKVF---TMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRE----  176 (327)
Q Consensus       110 ~~l~sgs~d~~i~lwdl~-~~~~~~~~~----~-~~~~~---~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~----  176 (327)
                      +.+.+-..||++....+. .|+......    . ...++   .+...+..++.-+.+|.|+--|+..........-    
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            458888889999888886 455433211    1 11111   2233455666677888888877765432111000    


Q ss_pred             -----cccee-eeEEeEEeeCCCce-EEEe-------ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        177 -----SSLKF-QTRCIKCFPNKQGY-VLSS-------IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       177 -----~~~~~-~~~~~~~~~~~~~~-~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                           ..... -...+++++..+.+ ++-.       .++...||.+|.....+.....+            ..++.+|+
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l------------~~~~~Si~  295 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL------------EHPIDSIA  295 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE------------EEEESEEE
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC------------CCccceEE
Confidence                 01100 00124455433332 2221       12334666666544322211111            12578899


Q ss_pred             EecCCC-eEEE-ecCCCeEEEEeCCCceeeeecCc
Q psy11885        243 FHQEYN-TFAT-GGSDGYVNIWDGFNKKRLCQFHR  275 (327)
Q Consensus       243 ~spd~~-~las-gs~dg~i~iWd~~~~~~~~~~~~  275 (327)
                      .+.|.+ +|.+ ...++.+.+||..+|+.+..+..
T Consensus       296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  296 VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            998876 4433 45689999999999998887754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.27  E-value=4.7  Score=34.33  Aligned_cols=133  Identities=17%  Similarity=0.154  Sum_probs=74.4

Q ss_pred             eCCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceee------------
Q psy11885         66 QDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVG------------  133 (327)
Q Consensus        66 ~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~------------  133 (327)
                      ..+..++.|..+| +.++++..........+..+|..+...++-+.++.-+ |+.+.++++..-....            
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            4577888888888 8888883222221112234499999988877766654 5999999987543322            


Q ss_pred             ---eeeCCCcEEEEe----cCCCeEEEEeCCCeEEEEECCCCccc--eeeecccceeeeEEeEEeeCCCceEEEeecC
Q psy11885        134 ---NYTQPDKVFTMS----LCGEKFVVGTAGRKVCIWDLRNMGYI--MQRRESSLKFQTRCIKCFPNKQGYVLSSIEG  202 (327)
Q Consensus       134 ---~~~~~~~~~~~~----~~~~~~~~~~~d~~v~iwD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (327)
                         .+.....+..+.    ..+...++....++|.+|........  ....+-.++..+..+.+.  .+.++++..++
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~  158 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG  158 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc
Confidence               111222233333    23445555666678998877653111  122223333444555555  34555555433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=93.12  E-value=1.9  Score=41.05  Aligned_cols=140  Identities=8%  Similarity=0.057  Sum_probs=71.3

Q ss_pred             CcEEEEEECCC-----cEEEEECCCCeEEEEec--CCCceeeEEEeCCceEEEEecCC----------------------
Q psy11885         28 NQFLLASSWDC-----NVSLYDITNNNLRLKYA--HSDPVLDCCFQDAVHSFSGGLDC----------------------   78 (327)
Q Consensus        28 ~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~--h~~~v~~~~~~~~~~~~sgs~Dg----------------------   78 (327)
                      +++.+.||.++     ++..||..+++-.....  +...-.+++..++...+.||.++                      
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~  431 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSS  431 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccccc
Confidence            56778888764     47889988775322111  11111122334555556676553                      


Q ss_pred             -cEEEEEcCCCceeeeecC-CccE-EEEEEeCCCCEEEEEECC------CeEEEEeCCC-Cceee--eeeCCCc-EEEEe
Q psy11885         79 -TLKMFDFNTQTETVIGTH-DQPI-RAVEYSDEVNCILTGSWD------TSVKMWDPRS-SRCVG--NYTQPDK-VFTMS  145 (327)
Q Consensus        79 -~i~vwd~~~~~~~~~~~h-~~~V-~~l~~~~~~~~l~sgs~d------~~i~lwdl~~-~~~~~--~~~~~~~-~~~~~  145 (327)
                       ++..||..++.-...... .... .+++ .-+++..+.|+.+      ..+..||.++ ++...  .+..+-. .-...
T Consensus       432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        432 NKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             ceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence             356677665543222111 1111 1122 2235556666654      2467899987 55432  2222111 22234


Q ss_pred             cCCCeEEEEeCCC--eEEEEECCCC
Q psy11885        146 LCGEKFVVGTAGR--KVCIWDLRNM  168 (327)
Q Consensus       146 ~~~~~~~~~~~d~--~v~iwD~~~~  168 (327)
                      ..+...++|+.++  ++..||..+.
T Consensus       511 ~~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        511 HDNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             ECCEEEEEeeecceeehhhcCcccc
Confidence            4566677888777  6667776653

>KOG4460|consensus

Probab=92.79  E-value=4.6  Score=37.33  Aligned_cols=88  Identities=15%  Similarity=0.174  Sum_probs=50.1

Q ss_pred             eEEeEEeeCCCceEEEeecCeEEEEE---ccCCcccccceeeeeeeeeccCCe----eeEEEeeEEEEecCC---CeEEE
Q psy11885        183 TRCIKCFPNKQGYVLSSIEGRAAVEY---LDTGPEMQKMKYAFKCHRIKEDGI----EKIYPVNAISFHQEY---NTFAT  252 (327)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~h~~~~~~~----~~~~~v~~v~~spd~---~~las  252 (327)
                      ...+..++.+...++++.+|-..+..   |.........+....|........    ...-.+...+|||+.   ..|..
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i  185 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL  185 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence            34555667777777777777766655   432222111112222322211100    011146778999986   67888


Q ss_pred             ecCCCeEEEEeCCCceee
Q psy11885        253 GGSDGYVNIWDGFNKKRL  270 (327)
Q Consensus       253 gs~dg~i~iWd~~~~~~~  270 (327)
                      =+.|.+||+||+.+.+.+
T Consensus       186 L~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  186 LTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EecCcEEEEEecCCcchh
Confidence            888999999998765443

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.64  E-value=1.2  Score=42.61  Aligned_cols=57  Identities=16%  Similarity=0.042  Sum_probs=36.4

Q ss_pred             eeEEEEecCCCeEEEecCC-CeEEEE-----------eCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        238 VNAISFHQEYNTFATGGSD-GYVNIW-----------DGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       238 v~~v~~spd~~~lasgs~d-g~i~iW-----------d~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      ...-.|+|||+.|++.+.. ..+++.           ++..++...   .....|.++.|||||+.||.-..
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~  467 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG  467 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC
Confidence            4567899998887776533 223333           333222211   23457999999999999998763

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.61  E-value=0.33  Score=43.30  Aligned_cols=49  Identities=18%  Similarity=0.103  Sum_probs=34.1

Q ss_pred             CCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        255 SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       255 ~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      ..+.+.|||+.+++... +......+....|||||+.||.....++.+..
T Consensus        21 ~~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~   69 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITP-LTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRD   69 (353)
T ss_dssp             EEEEEEEEETTTTEEEE-SS-EETTBSEEEE-SSSTEEEEEETTEEEEES
T ss_pred             cceeEEEEecCCCceEE-CcCCccccccceeecCCCeeEEEecCceEEEE
Confidence            34679999999876443 33224567889999999999999765555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.58  E-value=3.4  Score=30.91  Aligned_cols=113  Identities=12%  Similarity=0.108  Sum_probs=71.0

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCCCe--------EEEEecCCCceeeEEE---e--C-CceEEEEecCCcEEEEE
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNN--------LRLKYAHSDPVLDCCF---Q--D-AVHSFSGGLDCTLKMFD   84 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~h~~~v~~~~~---~--~-~~~~~sgs~Dg~i~vwd   84 (327)
                      +.-+|.... .-|+++..-+.|.|++.....        ......-...|++++-   .  + ...|+-|+ ..++-.||
T Consensus         2 aiGkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD   79 (136)
T ss_pred             eEEEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence            445677643 457777788999999876432        2233345567777753   1  2 33445554 77899999


Q ss_pred             cCCCceeeeecCCccEEEEEEe---C-CCCEEEEEECCCeEEEEeCCCCceeee
Q psy11885         85 FNTQTETVIGTHDQPIRAVEYS---D-EVNCILTGSWDTSVKMWDPRSSRCVGN  134 (327)
Q Consensus        85 ~~~~~~~~~~~h~~~V~~l~~~---~-~~~~l~sgs~d~~i~lwdl~~~~~~~~  134 (327)
                      +..+...+...-.+.|+++.+-   . +..+++.|+ ...|+-||.+..+..++
T Consensus        80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             cccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence            9988776665555667777663   2 233444444 57888888766555544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.52  E-value=9.7  Score=36.07  Aligned_cols=105  Identities=18%  Similarity=0.126  Sum_probs=64.3

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCC--cee---e-------EEEeCCceEEEEecCCcEEEEEcCCCceeeeec-
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSD--PVL---D-------CCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGT-   95 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~--~v~---~-------~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~-   95 (327)
                      ..|++++.++.|+-.|..+|++.-.+....  .+.   +       +++ .+..++.++.|+.+.-.|..+++...... 
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av-~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~  148 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL-YDGKVFFGTLDARLVALDAKTGKVVWSKKN  148 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE-ECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence            356677778889999999998654433221  111   1       122 23567788889999999998887643211 


Q ss_pred             --CC--ccEEE-EEEeCCCCEEEEEE------CCCeEEEEeCCCCceeeeee
Q psy11885         96 --HD--QPIRA-VEYSDEVNCILTGS------WDTSVKMWDPRSSRCVGNYT  136 (327)
Q Consensus        96 --h~--~~V~~-l~~~~~~~~l~sgs------~d~~i~lwdl~~~~~~~~~~  136 (327)
                        +.  ..+.+ -.+. + ..++.+.      .++.|..+|.++|+.++.+.
T Consensus       149 ~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       149 GDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             ccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence              11  11111 1111 2 3455553      26899999999999887754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.29  E-value=1.1  Score=40.96  Aligned_cols=79  Identities=14%  Similarity=0.094  Sum_probs=49.9

Q ss_pred             EeeEEEEecCCCeEEEe-cCC----CeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCCCCCCC
Q psy11885        237 PVNAISFHQEYNTFATG-GSD----GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPP  311 (327)
Q Consensus       237 ~v~~v~~spd~~~lasg-s~d----g~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~  311 (327)
                      .+...++|||++++|-+ +.+    .++++.|+.+++.+...-... .-..++|++||+.|.....+......  ....+
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~--~~~~~  201 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTS--DSGYP  201 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS---CCGCC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccc--cCCCC
Confidence            35578899999998743 233    469999999998765321111 11349999999999888655533311  33344


Q ss_pred             CcEEEEE
Q psy11885        312 NNIFIRH  318 (327)
Q Consensus       312 ~~~~~~~  318 (327)
                      ++||...
T Consensus       202 ~~v~~~~  208 (414)
T PF02897_consen  202 RQVYRHK  208 (414)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            5555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.11  E-value=7.5  Score=33.80  Aligned_cols=57  Identities=23%  Similarity=0.331  Sum_probs=34.9

Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceee--eecCcCCcceEEEEECCCCCEEEEE
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL--CQFHRYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~--~~~~~~~~~v~~l~fspdg~~la~~  295 (327)
                      .+..+..++||+++++++......-||-  ++..  ..-+.-..+|.++.|+||+.+..++
T Consensus       146 s~~~~~r~~dG~~vavs~~G~~~~s~~~--G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~  204 (302)
T PF14870_consen  146 SINDITRSSDGRYVAVSSRGNFYSSWDP--GQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA  204 (302)
T ss_dssp             -EEEEEE-TTS-EEEEETTSSEEEEE-T--T-SS-EEEE--SSS-EEEEEE-TTS-EEEEE
T ss_pred             eeEeEEECCCCcEEEEECcccEEEEecC--CCccceEEccCccceehhceecCCCCEEEEe
Confidence            5777888999999999988777778873  3321  1122235679999999998886655

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.98  E-value=11  Score=35.62  Aligned_cols=141  Identities=13%  Similarity=0.157  Sum_probs=84.9

Q ss_pred             EEEEEECCCcEEEEECCCCeEEEEec---CCC--ceee-EEEeCCceEEEEe------cCCcEEEEEcCCCceeee----
Q psy11885         30 FLLASSWDCNVSLYDITNNNLRLKYA---HSD--PVLD-CCFQDAVHSFSGG------LDCTLKMFDFNTQTETVI----   93 (327)
Q Consensus        30 ~l~s~~~d~~i~iwd~~~~~~~~~~~---h~~--~v~~-~~~~~~~~~~sgs------~Dg~i~vwd~~~~~~~~~----   93 (327)
                      .++.++.|+.+.-.|..+|++.-...   +..  .+.+ -...++ .++.+.      .+|.|..+|.++++....    
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~  200 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV  200 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence            46667789999999999998653322   111  1211 112233 455443      268899999888765321    


Q ss_pred             ecC----------------------------CccEE-EEEEeCCCCEEEEEEC-----CC-----------eEEEEeCCC
Q psy11885         94 GTH----------------------------DQPIR-AVEYSDEVNCILTGSW-----DT-----------SVKMWDPRS  128 (327)
Q Consensus        94 ~~h----------------------------~~~V~-~l~~~~~~~~l~sgs~-----d~-----------~i~lwdl~~  128 (327)
                      ...                            ...+. ...+.++.++++.+..     ++           .|...|+++
T Consensus       201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T  280 (527)
T TIGR03075       201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT  280 (527)
T ss_pred             CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence            110                            11222 2466777777766541     22           677889999


Q ss_pred             CceeeeeeC-CC---------c--EEEEecCCC---eEEEEeCCCeEEEEECCCCccc
Q psy11885        129 SRCVGNYTQ-PD---------K--VFTMSLCGE---KFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus       129 ~~~~~~~~~-~~---------~--~~~~~~~~~---~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      |+..+.++. ++         .  .+.+..+|.   .++.+..+|.+.+.|-++++.+
T Consensus       281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            998877653 11         1  122323555   4668899999999999888764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.92  E-value=5.8  Score=32.17  Aligned_cols=119  Identities=10%  Similarity=0.117  Sum_probs=69.0

Q ss_pred             EEEEecCCCce--eeEEEeCCceEEEEecCC--cEEEEEcCCCceeeeecCC-ccEEEEEEeCCCCEEEE-EECCCeEEE
Q psy11885         50 LRLKYAHSDPV--LDCCFQDAVHSFSGGLDC--TLKMFDFNTQTETVIGTHD-QPIRAVEYSDEVNCILT-GSWDTSVKM  123 (327)
Q Consensus        50 ~~~~~~h~~~v--~~~~~~~~~~~~sgs~Dg--~i~vwd~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s-gs~d~~i~l  123 (327)
                      +...+.|+..-  ..+.+-++..+.|.+.-|  .|++||+.+++......-. ..+-.=-...-++.+.- -..|+.-..
T Consensus        36 vi~~yphDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~  115 (262)
T COG3823          36 VIRTYPHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFK  115 (262)
T ss_pred             EEEeccCchhhhhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEE
Confidence            45556665431  234444565556666543  6999999977654322111 01100000011223322 245788889


Q ss_pred             EeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885        124 WDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNM  168 (327)
Q Consensus       124 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~  168 (327)
                      +|.++-+++..+.-++.-..+..+++.++.+....+++.-|-++.
T Consensus       116 ~d~~t~~~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tf  160 (262)
T COG3823         116 YDADTLEELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             EChHHhhhhcccccCCcceeeecCCcceEeeCCceEEEecCHHHh
Confidence            999998988888877777777777777777666666776665543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.54  E-value=0.72  Score=26.88  Aligned_cols=30  Identities=27%  Similarity=0.258  Sum_probs=24.2

Q ss_pred             EeeEEEEecCCC---eEEEecCCCeEEEEeCCC
Q psy11885        237 PVNAISFHQEYN---TFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       237 ~v~~v~~spd~~---~lasgs~dg~i~iWd~~~  266 (327)
                      .+.++.|+|...   +||-+-.-|.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            367899998654   777777779999999985

It contains a characteristic DLL sequence motif.

>KOG2377|consensus

Probab=91.37  E-value=2.2  Score=38.65  Aligned_cols=119  Identities=16%  Similarity=0.305  Sum_probs=77.7

Q ss_pred             eecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cC---CCceeeEEEeCCceEEEEecCCcEEE
Q psy11885          8 YSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AH---SDPVLDCCFQDAVHSFSGGLDCTLKM   82 (327)
Q Consensus         8 ~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h---~~~v~~~~~~~~~~~~sgs~Dg~i~v   82 (327)
                      .++-+..+++|.+|+||+| ++.||+--.|.+|.+.+....+....+  .|   +..|...+|.+...++--+ +.-+-+
T Consensus        59 iSfdm~d~G~I~SIkFSlD-nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~  136 (657)
T KOG2377|consen   59 ISFDMDDKGEIKSIKFSLD-NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFIT-DQGIEF  136 (657)
T ss_pred             ceeeecCCCceeEEEeccC-cceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEe-cCCeEE
Confidence            3444556789999999995 689999999999999999665533222  22   2347777887666666555 344667


Q ss_pred             EEcCCCce--eeeecCCccEEEEEEeCCCCEEEEEE--CCCeEEEEeCCC
Q psy11885         83 FDFNTQTE--TVIGTHDQPIRAVEYSDEVNCILTGS--WDTSVKMWDPRS  128 (327)
Q Consensus        83 wd~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~sgs--~d~~i~lwdl~~  128 (327)
                      |.......  .....|+..|+-..|.++.+.++-++  ..+++.=+-+++
T Consensus       137 y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  137 YQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             EEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            76554332  23456788888889998877654333  344444344433

>KOG4499|consensus

Probab=91.36  E-value=5  Score=33.15  Aligned_cols=47  Identities=15%  Similarity=0.212  Sum_probs=36.8

Q ss_pred             EEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEEEEecCCC
Q psy11885        103 VEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVFTMSLCGE  149 (327)
Q Consensus       103 l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~~~~~~~~  149 (327)
                      ++...+|++.++.-.-++|...|+.+|+.+.++..+. ++.++.+-|.
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            3446688888888889999999999999999888764 3556666554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.21  E-value=12  Score=34.19  Aligned_cols=150  Identities=12%  Similarity=0.152  Sum_probs=80.5

Q ss_pred             eEEEEecCCCcEEEEEECCC----cEEEEECCCCeEEEE-ecCCCceeeEEEe-CCceEEEEecC-----------CcEE
Q psy11885         19 TAVKFAPNSNQFLLASSWDC----NVSLYDITNNNLRLK-YAHSDPVLDCCFQ-DAVHSFSGGLD-----------CTLK   81 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~-~~h~~~v~~~~~~-~~~~~~sgs~D-----------g~i~   81 (327)
                      ...++||++..++++-+..|    .+++.|+.+++.... .... ....+.|. ++..++-...+           ..|+
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            46789997644444545444    599999999985432 1111 11237885 54555543333           2378


Q ss_pred             EEEcCCCce---eeeecCCc-c-EEEEEEeCCCCEEEEEEC---C-CeEEEEeCCCC-----ceeeeee-CCCcEEEEec
Q psy11885         82 MFDFNTQTE---TVIGTHDQ-P-IRAVEYSDEVNCILTGSW---D-TSVKMWDPRSS-----RCVGNYT-QPDKVFTMSL  146 (327)
Q Consensus        82 vwd~~~~~~---~~~~~h~~-~-V~~l~~~~~~~~l~sgs~---d-~~i~lwdl~~~-----~~~~~~~-~~~~~~~~~~  146 (327)
                      .|.+.+...   .++..... . ...+..++|+++++....   + ..+.+.|+..+     +...... .......+..
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~  285 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH  285 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence            888877643   23443333 3 567888999998775422   2 45788888764     2222222 1223333434


Q ss_pred             CCCeEEEEeCC----CeEEEEECCCCc
Q psy11885        147 CGEKFVVGTAG----RKVCIWDLRNMG  169 (327)
Q Consensus       147 ~~~~~~~~~~d----~~v~iwD~~~~~  169 (327)
                      .++.++..+.+    +.|..-++.+..
T Consensus       286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  286 HGDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             ETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             cCCEEEEeeCCCCCCcEEEEecccccc
Confidence            46655544433    456666777654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.76  E-value=0.67  Score=26.20  Aligned_cols=21  Identities=24%  Similarity=0.232  Sum_probs=16.2

Q ss_pred             ceEEEEECCCCCEEEEEEccc
Q psy11885        279 GITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       279 ~v~~l~fspdg~~la~~~~~~  299 (327)
                      .-...+|||||++|+..+...
T Consensus        10 ~~~~p~~SpDGk~i~f~s~~~   30 (39)
T PF07676_consen   10 DDGSPAWSPDGKYIYFTSNRN   30 (39)
T ss_dssp             SEEEEEE-TTSSEEEEEEECT
T ss_pred             cccCEEEecCCCEEEEEecCC
Confidence            456789999999999987544

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=90.39  E-value=3.3  Score=37.66  Aligned_cols=54  Identities=19%  Similarity=0.254  Sum_probs=38.5

Q ss_pred             eeEEEeeEEEE--------ecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECC
Q psy11885        233 EKIYPVNAISF--------HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  287 (327)
Q Consensus       233 ~~~~~v~~v~~--------spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp  287 (327)
                      +.+..+-++-+        .||...+|+|-.+|.|++|.- +|..+..-.-|+.+|..|....
T Consensus        57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            34455666666        255678999999999999984 6666655455777888876654

>PRK13616 lipoprotein LpqB; Provisional

Probab=89.62  E-value=15  Score=35.25  Aligned_cols=105  Identities=8%  Similarity=0.098  Sum_probs=58.4

Q ss_pred             CeeEEEEecCCCcEEEEEECC------------CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEE-
Q psy11885         17 GITAVKFAPNSNQFLLASSWD------------CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKM-   82 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~v-   82 (327)
                      ..+.-+|+|++ ..|++.+..            +.+.+.++..++...  ..+..|..+.|+ ++..++... ++.|.+ 
T Consensus       398 ~~t~PsWspDG-~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va  473 (591)
T PRK13616        398 SLTRPSWSLDA-DAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLA  473 (591)
T ss_pred             CCCCceECCCC-CceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEE
Confidence            36778999964 455554322            223333444433322  335679999996 888777554 566666 


Q ss_pred             --EEcCCCceee-----ee-cCCccEEEEEEeCCCCEEEEEECCCeEEEEeC
Q psy11885         83 --FDFNTQTETV-----IG-THDQPIRAVEYSDEVNCILTGSWDTSVKMWDP  126 (327)
Q Consensus        83 --wd~~~~~~~~-----~~-~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl  126 (327)
                        -....+....     +. .-...+.++.|.+++.+ +.+..++...+|.+
T Consensus       474 ~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v  524 (591)
T PRK13616        474 VVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYV  524 (591)
T ss_pred             EEEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEE
Confidence              3323333211     21 22334688999998874 45555554455544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.25  E-value=3.4  Score=34.08  Aligned_cols=25  Identities=12%  Similarity=0.250  Sum_probs=21.1

Q ss_pred             CCcEEEEEECCCcEEEEECCCCeEE
Q psy11885         27 SNQFLLASSWDCNVSLYDITNNNLR   51 (327)
Q Consensus        27 ~~~~l~s~~~d~~i~iwd~~~~~~~   51 (327)
                      .+.+|++...+|.+++||+.+++..
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~   45 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAV   45 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeec
Confidence            3568888899999999999998754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.98  E-value=2.1  Score=24.38  Aligned_cols=41  Identities=10%  Similarity=0.032  Sum_probs=26.8

Q ss_pred             cCCCeEEEe-cCCCeEEEEeCCCceeeeecCcCCcceEEEEEC
Q psy11885        245 QEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  286 (327)
Q Consensus       245 pd~~~lasg-s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fs  286 (327)
                      |+++.|.++ -.+++|.++|..+++.+..+.....+ ..++||
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEeC
Confidence            566655554 45789999999888877776543222 455554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1897|consensus

Probab=88.97  E-value=27  Score=35.07  Aligned_cols=273  Identities=14%  Similarity=0.111  Sum_probs=127.8

Q ss_pred             EEEEEECCCcEEEEECCCCeEEEEecC--CCceeeEEEe----CCc---eEEEEecCCcEEEEEcCCCcee-e---eec-
Q psy11885         30 FLLASSWDCNVSLYDITNNNLRLKYAH--SDPVLDCCFQ----DAV---HSFSGGLDCTLKMFDFNTQTET-V---IGT-   95 (327)
Q Consensus        30 ~l~s~~~d~~i~iwd~~~~~~~~~~~h--~~~v~~~~~~----~~~---~~~sgs~Dg~i~vwd~~~~~~~-~---~~~-   95 (327)
                      .++.++.++.+...+.+.+.+.....+  ...|.|+.++    ..+   .++.|.++..+.+--....... .   +.. 
T Consensus       501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~  580 (1096)
T KOG1897|consen  501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE  580 (1096)
T ss_pred             EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC
Confidence            455555567777777766664433332  3457777764    222   6778888877666533222111 1   111 


Q ss_pred             -CCccEEEEEEeCCCCEEEEEECCCeEEEEeCC--CCceee---ee--eCCCcEEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885         96 -HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR--SSRCVG---NY--TQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus        96 -h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~--~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~  167 (327)
                       -...|.-.++-.|..+|+++..||.+.-|-+.  ++..-.   ..  ..|.....+...+..-+.+..|+..-+|--+ 
T Consensus       581 ~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-  659 (1096)
T KOG1897|consen  581 IIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-  659 (1096)
T ss_pred             ccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-
Confidence             11234445666678899999999999766543  332110   01  1122223333333333333444444444332 


Q ss_pred             CccceeeecccceeeeEEeE-Ee-eCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        168 MGYIMQRRESSLKFQTRCIK-CF-PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      .+.+....  .++. ...++ ++ +.....++....+...+.-.|.-+........+.            .+...+++++
T Consensus       660 ~kLv~spl--s~ke-v~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~------------~~prrI~~q~  724 (1096)
T KOG1897|consen  660 GKLVYSPL--SLKE-VNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLG------------ESPRRICYQE  724 (1096)
T ss_pred             CcEEEecc--chHH-hhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCC------------CChhheEecc
Confidence            11110000  0000 00000 11 1111222223333333322221111100000000            1234556665


Q ss_pred             CCCeEEEec-----------CC---CeEEEEeCCCceeeee--cCcCCc--ceEEEEECCC-CCEEEEEEccccccCCCC
Q psy11885        246 EYNTFATGG-----------SD---GYVNIWDGFNKKRLCQ--FHRYDT--GITSLCFSYD-GNVLAIACSYNYELETPP  306 (327)
Q Consensus       246 d~~~lasgs-----------~d---g~i~iWd~~~~~~~~~--~~~~~~--~v~~l~fspd-g~~la~~~~~~~~~~~~~  306 (327)
                      ....+++-+           +.   ..++++|-.+.+.+..  +...+.  .|.++.|..| +.++++|.+..+.-+-. 
T Consensus       725 ~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~e-  803 (1096)
T KOG1897|consen  725 SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENE-  803 (1096)
T ss_pred             cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCC-
Confidence            444443322           11   2477888766655442  222332  4667779999 89999999874443331 


Q ss_pred             CCCCCCcEEEEEccc
Q psy11885        307 DPIPPNNIFIRHVTD  321 (327)
Q Consensus       307 ~~~~~~~~~~~~~~~  321 (327)
                        ...++|.++.+.+
T Consensus       804 --p~~GRIivfe~~e  816 (1096)
T KOG1897|consen  804 --PVNGRIIVFEFEE  816 (1096)
T ss_pred             --cccceEEEEEEec
Confidence              2567899998877

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.96  E-value=2.9  Score=39.78  Aligned_cols=69  Identities=12%  Similarity=0.238  Sum_probs=43.6

Q ss_pred             CCceEEEEecCCcEEEEEcCC---Cce--e--eeec--------------------CCccEEEEEEeC----CCCEEEEE
Q psy11885         67 DAVHSFSGGLDCTLKMFDFNT---QTE--T--VIGT--------------------HDQPIRAVEYSD----EVNCILTG  115 (327)
Q Consensus        67 ~~~~~~sgs~Dg~i~vwd~~~---~~~--~--~~~~--------------------h~~~V~~l~~~~----~~~~l~sg  115 (327)
                      +...++.+..||.+.......   ...  .  ....                    -...+.+++.+.    +..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            666777778899888887654   110  0  0100                    123445566655    66889999


Q ss_pred             ECCCeEEEEeCCCCceeeee
Q psy11885        116 SWDTSVKMWDPRSSRCVGNY  135 (327)
Q Consensus       116 s~d~~i~lwdl~~~~~~~~~  135 (327)
                      +.|+++|+||+.+++++.+.
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.73  E-value=1.4  Score=37.36  Aligned_cols=56  Identities=20%  Similarity=0.361  Sum_probs=42.7

Q ss_pred             EEecCCCeEEEecCC-----CeEEEEeCCCc-eeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        242 SFHQEYNTFATGGSD-----GYVNIWDGFNK-KRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       242 ~~spd~~~lasgs~d-----g~i~iWd~~~~-~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      .|||||.+|...-.|     |.|-|||.+.+ .++..+..|.-+-..+.+.+||+.|+.+.+
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            689999999765433     67999998753 345566666656688999999999998854

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.59  E-value=13  Score=36.48  Aligned_cols=90  Identities=17%  Similarity=0.232  Sum_probs=49.8

Q ss_pred             eeeeEEeEEeeCCCceEEEeecCeEEEEEccC-C--cccccceeeeeeeeeccC----CeeeEEEeeEEEEecC---CCe
Q psy11885        180 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT-G--PEMQKMKYAFKCHRIKED----GIEKIYPVNAISFHQE---YNT  249 (327)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~--~~~~~~~~~~~~h~~~~~----~~~~~~~v~~v~~spd---~~~  249 (327)
                      .+.+..+..++++..+++.+..+-..+..-.. +  ...........|.....+    ....-..|..+.|||.   +..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            34556777888888777776655554433110 0  000000011111111000    0011125788999997   488


Q ss_pred             EEEecCCCeEEEEeCCCcee
Q psy11885        250 FATGGSDGYVNIWDGFNKKR  269 (327)
Q Consensus       250 lasgs~dg~i~iWd~~~~~~  269 (327)
                      |++=..|+++|+||+.+.+.
T Consensus       164 l~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             EEEEecCCEEEEEecCCCCC
Confidence            99888999999999876543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.05  E-value=6.2  Score=32.55  Aligned_cols=64  Identities=9%  Similarity=0.051  Sum_probs=45.5

Q ss_pred             eCCceEEEEecCCcEEEEEcCCCceee--------ee-------cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885         66 QDAVHSFSGGLDCTLKMFDFNTQTETV--------IG-------THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR  130 (327)
Q Consensus        66 ~~~~~~~sgs~Dg~i~vwd~~~~~~~~--------~~-------~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~  130 (327)
                      ..+.+++.-..+|.+.+||+.+.+...        +.       .....|..+.+..+|.-+++-+. |....|+..-+.
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~L~~   98 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPDLGC   98 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccccce
Confidence            467788888889999999998865321        11       24456788888888877776554 677888865443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.96  E-value=12  Score=37.11  Aligned_cols=104  Identities=14%  Similarity=0.176  Sum_probs=66.7

Q ss_pred             CceEEEEecCCcEEEEEcCCCceeeeecCCcc---------EEEEEEeC----------------CCCEEEEEECCCeEE
Q psy11885         68 AVHSFSGGLDCTLKMFDFNTQTETVIGTHDQP---------IRAVEYSD----------------EVNCILTGSWDTSVK  122 (327)
Q Consensus        68 ~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~---------V~~l~~~~----------------~~~~l~sgs~d~~i~  122 (327)
                      +..++.++.++.|.-.|..+++.......+..         .+.+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            55777888888888889888776432211111         12233321                345888999999999


Q ss_pred             EEeCCCCceeeeeeCCCcE-------------EEEe----cCCCeEEEEeC----------CCeEEEEECCCCccc
Q psy11885        123 MWDPRSSRCVGNYTQPDKV-------------FTMS----LCGEKFVVGTA----------GRKVCIWDLRNMGYI  171 (327)
Q Consensus       123 lwdl~~~~~~~~~~~~~~~-------------~~~~----~~~~~~~~~~~----------d~~v~iwD~~~~~~~  171 (327)
                      ..|.++|+....+.....+             +...    ..++.+++++.          +|.|+-+|.++++.+
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            9999999988765432211             0001    12456667643          578999999988764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4441|consensus

Probab=87.26  E-value=28  Score=33.41  Aligned_cols=149  Identities=18%  Similarity=0.176  Sum_probs=79.5

Q ss_pred             CeeEEEEecCCCcEEEEEECC------CcEEEEECCCCeEEEEec-CCCc-eeeEEEeCCceEEEEecCCc-----EEEE
Q psy11885         17 GITAVKFAPNSNQFLLASSWD------CNVSLYDITNNNLRLKYA-HSDP-VLDCCFQDAVHSFSGGLDCT-----LKMF   83 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~-h~~~-v~~~~~~~~~~~~sgs~Dg~-----i~vw   83 (327)
                      .-.+++...  +.+.++||.|      .++..||...++=..... .... -..++..++..-+.||.||.     |-.|
T Consensus       324 ~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~Y  401 (571)
T KOG4441|consen  324 CRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECY  401 (571)
T ss_pred             ccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEe
Confidence            345666664  4788899998      467788887776221111 1111 11233346777778888864     6667


Q ss_pred             EcCCCceeeeecCCccEEEEEE-eCCCCEEEEEECC------CeEEEEeCCCCceeeeee--CCCcEE-EEecCCCeEEE
Q psy11885         84 DFNTQTETVIGTHDQPIRAVEY-SDEVNCILTGSWD------TSVKMWDPRSSRCVGNYT--QPDKVF-TMSLCGEKFVV  153 (327)
Q Consensus        84 d~~~~~~~~~~~h~~~V~~l~~-~~~~~~l~sgs~d------~~i~lwdl~~~~~~~~~~--~~~~~~-~~~~~~~~~~~  153 (327)
                      |..+.+-.....+......... .-+|...+.||.|      .++..||..+++....-.  .+-... ....++...++
T Consensus       402 Dp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvv  481 (571)
T KOG4441|consen  402 DPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVV  481 (571)
T ss_pred             cCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEE
Confidence            7666543332222222222222 2356677777755      457889988876543221  111112 23334555666


Q ss_pred             EeCCC-----eEEEEECCC
Q psy11885        154 GTAGR-----KVCIWDLRN  167 (327)
Q Consensus       154 ~~~d~-----~v~iwD~~~  167 (327)
                      |+.|+     +|..+|.++
T Consensus       482 GG~~~~~~~~~VE~ydp~~  500 (571)
T KOG4441|consen  482 GGFDGTSALSSVERYDPET  500 (571)
T ss_pred             CCccCCCccceEEEEcCCC
Confidence            66655     255555543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.04  E-value=13  Score=34.49  Aligned_cols=54  Identities=15%  Similarity=0.300  Sum_probs=42.4

Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      ...++|.||..|-||+||.-..+--..+.+....|..+..+.+|++|.+.|..-
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~y  625 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNY  625 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecce
Confidence            456899999999999999554333344566677899999999999998888643

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=86.57  E-value=21  Score=31.15  Aligned_cols=128  Identities=11%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             CCeeEEEEecCCCcEEEEEECC------------CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEec-CCcEE
Q psy11885         16 DGITAVKFAPNSNQFLLASSWD------------CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGL-DCTLK   81 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~-Dg~i~   81 (327)
                      ..-+.+...|++ .+.+ +.+.            |.++..|...........+-..-+.++|+ ++..++.+.. .+.|.
T Consensus       111 ~r~ND~~v~pdG-~~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~  188 (307)
T COG3386         111 NRPNDGVVDPDG-RIWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH  188 (307)
T ss_pred             CCCCceeEcCCC-CEEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence            455678888864 4433 3333            33444443222333333333334678996 6767776654 47777


Q ss_pred             EEEcCC--C----ce-eee-ecCCccEEEEEEeCCCCEEEEEECCC-eEEEEeCCCCceeeeeeCCC-cEEEEec
Q psy11885         82 MFDFNT--Q----TE-TVI-GTHDQPIRAVEYSDEVNCILTGSWDT-SVKMWDPRSSRCVGNYTQPD-KVFTMSL  146 (327)
Q Consensus        82 vwd~~~--~----~~-~~~-~~h~~~V~~l~~~~~~~~l~sgs~d~-~i~lwdl~~~~~~~~~~~~~-~~~~~~~  146 (327)
                      .+++..  .    +. ... ....+..-.++...+|++-+++...| .|.+|+.. ++.+..+..+. ...++.+
T Consensus       189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F  262 (307)
T COG3386         189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF  262 (307)
T ss_pred             EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence            777652  1    11 111 12233444567777887776665554 99999988 88888888773 3333333

>KOG3630|consensus

Probab=86.48  E-value=3.2  Score=41.85  Aligned_cols=61  Identities=13%  Similarity=-0.042  Sum_probs=42.0

Q ss_pred             eeEEEEecCCC-eEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        238 VNAISFHQEYN-TFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       238 v~~v~~spd~~-~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      ..++.|.|.-. ..|+...|+.|++..+.......+-.......++++|||.|+.|++|-..
T Consensus       158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nn  219 (1405)
T KOG3630|consen  158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNN  219 (1405)
T ss_pred             cccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCC
Confidence            45677887542 45677789999988764433322222344568999999999999999654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=85.95  E-value=15  Score=35.35  Aligned_cols=54  Identities=17%  Similarity=0.324  Sum_probs=40.7

Q ss_pred             EEecCCcEEEEEcCCCceeeee--cCCccEEEEEEe--CCCCEEEEEECCCeEEEEeC
Q psy11885         73 SGGLDCTLKMFDFNTQTETVIG--THDQPIRAVEYS--DEVNCILTGSWDTSVKMWDP  126 (327)
Q Consensus        73 sgs~Dg~i~vwd~~~~~~~~~~--~h~~~V~~l~~~--~~~~~l~sgs~d~~i~lwdl  126 (327)
                      .-+.-..+.+||...+....-.  ...++|.+++|.  |+++.+++.+....|.++--
T Consensus        46 V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   46 VDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             EECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            3344457899999877643222  346789999985  78999999999999999864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2280|consensus

Probab=85.89  E-value=36  Score=33.18  Aligned_cols=38  Identities=21%  Similarity=0.178  Sum_probs=29.9

Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  274 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~  274 (327)
                      .+--++.||..++||--..+|.|.+-+....+.++.+.
T Consensus       218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            35568899999999999999999888876666555543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=85.85  E-value=26  Score=31.49  Aligned_cols=215  Identities=14%  Similarity=0.088  Sum_probs=94.1

Q ss_pred             CCceEE-EEecCCcEEEE--EcCCCceeeeecCC-ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE-
Q psy11885         67 DAVHSF-SGGLDCTLKMF--DFNTQTETVIGTHD-QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV-  141 (327)
Q Consensus        67 ~~~~~~-sgs~Dg~i~vw--d~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~-  141 (327)
                      ++..++ ++..||.-.+|  |+.++....+.... .......++++.+.++-......|+..|+++.+....+..+... 
T Consensus        46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~  125 (386)
T PF14583_consen   46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK  125 (386)
T ss_dssp             TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE
T ss_pred             CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc
Confidence            565554 55567765555  67777655443322 22224566788888776666779999999998765545444322 


Q ss_pred             --EEEecC-CCeEEEEeC-----------------------CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCce
Q psy11885        142 --FTMSLC-GEKFVVGTA-----------------------GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGY  195 (327)
Q Consensus       142 --~~~~~~-~~~~~~~~~-----------------------d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (327)
                        ..+..+ ....+++..                       ...|..-|+++++.-.......   -...+.++|..+.+
T Consensus       126 g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~---wlgH~~fsP~dp~l  202 (386)
T PF14583_consen  126 GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD---WLGHVQFSPTDPTL  202 (386)
T ss_dssp             EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS----EEEEEEETTEEEE
T ss_pred             cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc---cccCcccCCCCCCE
Confidence              122222 222222211                       1123333555443211111111   02345567777777


Q ss_pred             EEEeecCe-----EEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEE-----ecCCCeEEEEeCC
Q psy11885        196 VLSSIEGR-----AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT-----GGSDGYVNIWDGF  265 (327)
Q Consensus       196 ~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~las-----gs~dg~i~iWd~~  265 (327)
                      ++-+-+|.     .+||..+......+.   +..+. ..+      .+..=-|.|||+.|.-     ++.+..|.-.|..
T Consensus       203 i~fCHEGpw~~Vd~RiW~i~~dg~~~~~---v~~~~-~~e------~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~  272 (386)
T PF14583_consen  203 IMFCHEGPWDLVDQRIWTINTDGSNVKK---VHRRM-EGE------SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD  272 (386)
T ss_dssp             EEEEE-S-TTTSS-SEEEEETTS---EE---SS----TTE------EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred             EEEeccCCcceeceEEEEEEcCCCccee---eecCC-CCc------ccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence            77766543     355555543322111   11111 111      2334467899987642     3445577778888


Q ss_pred             CceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        266 NKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       266 ~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      +++... +.. ..++..+--|+||+++| |.+
T Consensus       273 t~~~~~-~~~-~p~~~H~~ss~Dg~L~v-GDG  301 (386)
T PF14583_consen  273 TGERRR-LME-MPWCSHFMSSPDGKLFV-GDG  301 (386)
T ss_dssp             T--EEE-EEE-E-SEEEEEE-TTSSEEE-EEE
T ss_pred             CCCceE-EEe-CCceeeeEEcCCCCEEE-ecC
Confidence            776533 211 22456777889998886 443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.75  E-value=3.4  Score=33.64  Aligned_cols=47  Identities=21%  Similarity=0.314  Sum_probs=34.6

Q ss_pred             CeEEEecCCCeEEEEeCC--CceeeeecCcCCcceEEEEECCCCCEEEEE
Q psy11885        248 NTFATGGSDGYVNIWDGF--NKKRLCQFHRYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       248 ~~lasgs~dg~i~iWd~~--~~~~~~~~~~~~~~v~~l~fspdg~~la~~  295 (327)
                      ..|..+...+.|.+|++.  ..+.+..+..- +.|..++++.-|.||++=
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEE
Confidence            344444567889999987  33455566543 578999999999999976

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=85.59  E-value=29  Score=31.75  Aligned_cols=93  Identities=17%  Similarity=0.206  Sum_probs=48.1

Q ss_pred             CCCcEEEEECCCCeEEEEecCC---CceeeEEEe---CCceEEEEec-CCcEEEEEc-CCCc---eeee--ec-------
Q psy11885         36 WDCNVSLYDITNNNLRLKYAHS---DPVLDCCFQ---DAVHSFSGGL-DCTLKMFDF-NTQT---ETVI--GT-------   95 (327)
Q Consensus        36 ~d~~i~iwd~~~~~~~~~~~h~---~~v~~~~~~---~~~~~~sgs~-Dg~i~vwd~-~~~~---~~~~--~~-------   95 (327)
                      ..+++.+||+.+.++.......   ..+..++|.   +..+-++|.. ..+|-.|-- +.+.   .+++  ..       
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            4578999999999977666432   346788883   3445554433 334444322 2221   1111  10       


Q ss_pred             ---C-------CccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCC
Q psy11885         96 ---H-------DQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRS  128 (327)
Q Consensus        96 ---h-------~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~  128 (327)
                         .       ..-|+.+..|.|.++|+.+. .+|.||.||+..
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence               0       23478899999998887654 589999999965

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=85.08  E-value=22  Score=30.02  Aligned_cols=59  Identities=17%  Similarity=0.179  Sum_probs=39.7

Q ss_pred             eeEEEEecCCCeEEEecCCCeEEEEe-CCCcee-eeecC--cCCcceEEEEECCCCCEEEEEE
Q psy11885        238 VNAISFHQEYNTFATGGSDGYVNIWD-GFNKKR-LCQFH--RYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       238 v~~v~~spd~~~lasgs~dg~i~iWd-~~~~~~-~~~~~--~~~~~v~~l~fspdg~~la~~~  296 (327)
                      +..-+|++++...++...+...+++. ..+++. .....  .....|.++++||||..+|.-.
T Consensus        68 l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen   68 LTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             cccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEE
Confidence            55678999988888777677777763 223322 11121  1112799999999999999886

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA03098 kelch-like protein; Provisional

Probab=84.98  E-value=24  Score=33.40  Aligned_cols=105  Identities=11%  Similarity=0.087  Sum_probs=52.0

Q ss_pred             CCcEEEEEECC-----CcEEEEECCCCeEEEEec--CCCceeeEEEeCCceEEEEecC------CcEEEEEcCCCceeee
Q psy11885         27 SNQFLLASSWD-----CNVSLYDITNNNLRLKYA--HSDPVLDCCFQDAVHSFSGGLD------CTLKMFDFNTQTETVI   93 (327)
Q Consensus        27 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~--h~~~v~~~~~~~~~~~~sgs~D------g~i~vwd~~~~~~~~~   93 (327)
                      ++.+++.||.+     ..+..||..+++-.....  +...-.+++..++...+.||.+      ..+..||..++.-...
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            34677778865     357778887765322111  1111112233455555566632      3577788776542221


Q ss_pred             ecCCcc--EEEEEEeCCCCEEEEEECC--------CeEEEEeCCCCcee
Q psy11885         94 GTHDQP--IRAVEYSDEVNCILTGSWD--------TSVKMWDPRSSRCV  132 (327)
Q Consensus        94 ~~h~~~--V~~l~~~~~~~~l~sgs~d--------~~i~lwdl~~~~~~  132 (327)
                      .....+  -.+.. ..++...+.|+.+        ..+.+||.++++..
T Consensus       422 ~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~  469 (534)
T PHA03098        422 SPLPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT  469 (534)
T ss_pred             CCCCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence            110000  01122 2344555666543        23888999887643

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=84.20  E-value=39  Score=32.09  Aligned_cols=59  Identities=17%  Similarity=0.201  Sum_probs=34.8

Q ss_pred             EeeEEEEecCCCeEEEecCC-CeEEEEeCCCceeee--e---cCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        237 PVNAISFHQEYNTFATGGSD-GYVNIWDGFNKKRLC--Q---FHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~d-g~i~iWd~~~~~~~~--~---~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      -|.|-+|.+||+.|+++-.+ =.-+|||-... .+.  .   ...-.+.|.++.-.-| ..+|.+..
T Consensus       157 ~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK-tL~~CsfcPVFdv~~~Icsi~AT~d-sqVAvaTE  221 (671)
T PF15390_consen  157 LIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK-TLHRCSFCPVFDVGGYICSIEATVD-SQVAVATE  221 (671)
T ss_pred             eEEEEEecCcCCEEEEEeCCeEEEEEecCchh-hhhhCCcceeecCCCceEEEEEecc-ceEEEEec
Confidence            37799999999998766433 35789985432 221  1   1223345666654443 45666654

>PHA02790 Kelch-like protein; Provisional

Probab=83.26  E-value=40  Score=31.55  Aligned_cols=137  Identities=11%  Similarity=0.018  Sum_probs=65.3

Q ss_pred             CCcEEEEEECC--CcEEEEECCCCeEEEEecCCCce--eeEEEeCCceEEEEecCC---cEEEEEcCCCceeeeecCCcc
Q psy11885         27 SNQFLLASSWD--CNVSLYDITNNNLRLKYAHSDPV--LDCCFQDAVHSFSGGLDC---TLKMFDFNTQTETVIGTHDQP   99 (327)
Q Consensus        27 ~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~h~~~v--~~~~~~~~~~~~sgs~Dg---~i~vwd~~~~~~~~~~~h~~~   99 (327)
                      ++.+.++||.+  .++..||..+++-.....-..+.  .+++..++...+.||.++   .+..||..++.-.....-..+
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~  397 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP  397 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence            35677788764  36788887766532221111111  122334555556666553   466788765543221111111


Q ss_pred             E--EEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee--eeCCC-cEEEEecCCCeEEEEeCC-----CeEEEEECCC
Q psy11885        100 I--RAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN--YTQPD-KVFTMSLCGEKFVVGTAG-----RKVCIWDLRN  167 (327)
Q Consensus       100 V--~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~d-----~~v~iwD~~~  167 (327)
                      .  .+++ .-+++..+.|+   .+..||.++++....  ...+. .......++...++|+.+     .+|..||.++
T Consensus       398 r~~~~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        398 HYKSCAL-VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             cccceEE-EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence            1  1111 23445555553   477899887764322  11111 122233445555666543     2455666543

>PHA03098 kelch-like protein; Provisional

Probab=83.05  E-value=43  Score=31.76  Aligned_cols=103  Identities=10%  Similarity=0.014  Sum_probs=52.0

Q ss_pred             CcEEEEEECCC------cEEEEECCCCeEEEEecCC--CceeeEEEeCCceEEEEecC-----CcEEEEEcCCCceeeee
Q psy11885         28 NQFLLASSWDC------NVSLYDITNNNLRLKYAHS--DPVLDCCFQDAVHSFSGGLD-----CTLKMFDFNTQTETVIG   94 (327)
Q Consensus        28 ~~~l~s~~~d~------~i~iwd~~~~~~~~~~~h~--~~v~~~~~~~~~~~~sgs~D-----g~i~vwd~~~~~~~~~~   94 (327)
                      +.+++.||.++      .+..||..+++-.....-.  -.-.+++..++...+.||.+     ..+..||..++.-....
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  374 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP  374 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence            45677777643      5778888777643221111  11122333455555667765     34666777665422211


Q ss_pred             c--CCccEEEEEEeCCCCEEEEEECC------CeEEEEeCCCCce
Q psy11885         95 T--HDQPIRAVEYSDEVNCILTGSWD------TSVKMWDPRSSRC  131 (327)
Q Consensus        95 ~--h~~~V~~l~~~~~~~~l~sgs~d------~~i~lwdl~~~~~  131 (327)
                      .  +...-.+++. -+++..+.||.+      +.+..||+.+++.
T Consensus       375 ~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        375 PLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             CcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            1  1000111222 245566666632      4678899887654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=82.96  E-value=35  Score=30.62  Aligned_cols=58  Identities=12%  Similarity=0.095  Sum_probs=31.9

Q ss_pred             eeEEEEecCCCeEEEecC-------------------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885        238 VNAISFHQEYNTFATGGS-------------------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       238 v~~v~~spd~~~lasgs~-------------------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~  296 (327)
                      .+.++|.|||.+.++-+.                   .|.|.-++...++....-.++ ...+.++|+|+|+++++-.
T Consensus       126 ~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       126 LNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence            455677777766554331                   134555554433322112232 2346899999999887643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3616|consensus

Probab=82.78  E-value=3.1  Score=40.10  Aligned_cols=67  Identities=15%  Similarity=0.273  Sum_probs=45.6

Q ss_pred             CccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce--eeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         97 DQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC--VGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        97 ~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      ...+.++.-+|.++.+++++.||.|++|+.-.+..  +.+...|..  .+.+.+..+++.+.|+.+.-|--
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~--nlv~tnhgl~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKE--NLVFTNHGLVTATSDRRALAWKE   82 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCcc--ceeeeccceEEEeccchhheeec
Confidence            44577788889999999999999999999755433  333333332  22233445777788887777753

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=82.44  E-value=8.6  Score=26.59  Aligned_cols=48  Identities=15%  Similarity=0.092  Sum_probs=29.5

Q ss_pred             EEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        251 ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       251 asgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      ..+..+|.+.-||..+++....+.+.. --+.|++|||++.|+.+=...
T Consensus        31 le~~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~Et~~   78 (89)
T PF03088_consen   31 LEGRPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVAETGR   78 (89)
T ss_dssp             HHT---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEEEGGG
T ss_pred             ecCCCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEEeccC
Confidence            345667889999988876433332222 237899999999888874443

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>smart00564 PQQ beta-propeller repeat

Probab=82.41  E-value=3.5  Score=21.98  Aligned_cols=25  Identities=16%  Similarity=0.254  Sum_probs=20.3

Q ss_pred             CEEEEEECCCeEEEEeCCCCceeee
Q psy11885        110 NCILTGSWDTSVKMWDPRSSRCVGN  134 (327)
Q Consensus       110 ~~l~sgs~d~~i~lwdl~~~~~~~~  134 (327)
                      ..++.++.++.+..+|.++|+.++.
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEE
Confidence            3677888899999999988887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.82  E-value=6.2  Score=22.06  Aligned_cols=29  Identities=10%  Similarity=0.290  Sum_probs=19.8

Q ss_pred             CCCeeEEEEecCCCcEEEEEECC--CcEEEE
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWD--CNVSLY   43 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d--~~i~iw   43 (327)
                      .+.-...+|||++..++.+...+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34567899999876666676666  666666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF01011 PQQ: PQQ enzyme repeat family

Probab=80.84  E-value=5.5  Score=22.33  Aligned_cols=28  Identities=11%  Similarity=0.221  Sum_probs=22.3

Q ss_pred             EEEEEECCCeEEEEeCCCCceeeeeeCC
Q psy11885        111 CILTGSWDTSVKMWDPRSSRCVGNYTQP  138 (327)
Q Consensus       111 ~l~sgs~d~~i~lwdl~~~~~~~~~~~~  138 (327)
                      .++.++.||.|...|.++|+.++.+...
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            4566688999999999999988877643

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=80.65  E-value=6.4  Score=39.10  Aligned_cols=44  Identities=14%  Similarity=-0.015  Sum_probs=29.6

Q ss_pred             CeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        257 GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       257 g~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      +.+.+-|.........-..+..+|.+-+|||||+.||...+++.
T Consensus       329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~  372 (912)
T TIGR02171       329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEG  372 (912)
T ss_pred             CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecC
Confidence            47777776544333220345668899999999999999555444

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=80.48  E-value=41  Score=31.96  Aligned_cols=113  Identities=12%  Similarity=0.202  Sum_probs=62.3

Q ss_pred             CCeeEEEEecCC---CcEEEEEECCCcEEEEECCC-----CeEEEE--ec--CCCce--eeEEEeCCceEEEEecCCcE-
Q psy11885         16 DGITAVKFAPNS---NQFLLASSWDCNVSLYDITN-----NNLRLK--YA--HSDPV--LDCCFQDAVHSFSGGLDCTL-   80 (327)
Q Consensus        16 ~~I~~i~fs~~~---~~~l~s~~~d~~i~iwd~~~-----~~~~~~--~~--h~~~v--~~~~~~~~~~~~sgs~Dg~i-   80 (327)
                      ..|..++|.|-+   -.-|++.-....|.||.+..     ++....  .+  ...+|  ..|.|++..-+++.=....+ 
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            357899999842   22355556788999999852     232211  11  12333  35678655444432222223 


Q ss_pred             EEEEcCCC--ceeeeecCCccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCC
Q psy11885         81 KMFDFNTQ--TETVIGTHDQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRS  128 (327)
Q Consensus        81 ~vwd~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~  128 (327)
                      .+.++...  +.+.--...+-|.+.+|.+||++|+.+- ..---.+||-..
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            23344322  2222113356799999999999887663 333346888543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	327
3mmy_A	368	Structural And Functional Analysis Of The Interacti		6e-48
2i3s_A	349	Bub3 Complex With Bub1 Glebs Motif Length = 349		9e-25
2i3t_A	341	Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length =		9e-25
1yfq_A	342	High Resolution S. Cerevisiae Bub3 Mitotic Checkpoi		1e-24
1u4c_A	349	Structure Of Spindle Checkpoint Protein Bub3 Length		5e-24
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-08
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-07
2h9l_A	329	Wdr5delta23 Length = 329		1e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-07
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-06
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		7e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		7e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		9e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		8e-04
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		7e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		9e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		5e-04

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score =  187 bits (476), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 164/309 (53%), Gaps = 16/309 (5%)
Query: 7   EYSLNSPPEDGITAVKFAPNS--NQFLLASSWDCNVSLYDITNNNLRLKYA---HSDPVL 61
           +  + S P+D I  + F+P +    FL+A SW  +V  +++ ++   +  A   H+ PVL
Sbjct: 31  DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 90
Query: 62  DCCFQD-AVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVN--CILTGSWD 118
           D C+ D     F+   D T KM+D ++     I  HD P++ + +    N  C++TGSWD
Sbjct: 91  DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 150
Query: 119 TSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESS 178
            ++K WD RSS  +     P++ +   +     VV TA R + ++ L N     +R ES 
Sbjct: 151 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 210
Query: 179 LKFQTRCIKCFPNKQ----GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR---IKEDG 231
           LK Q RC+  F +KQ    G+ L SIEGR A+ Y++  P   K  + FKCHR        
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSNGTNTSA 269
Query: 232 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNV 291
            + IY VN I+FH  + T AT GSDG  + WD   + +L    + D  I++ CF+++GN+
Sbjct: 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329
Query: 292 LAIACSYNY 300
            A A SY++
Sbjct: 330 FAYASSYDW 338

>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif Length = 349

Iteration: 1
 Score =  110 bits (276), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 150/318 (47%), Gaps = 46/318 (14%)
Query: 10  LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLY--DITNNNL----RLKYAHSDPVLDC 63
           +   P+D I+ +K  P S   LL +SWD ++++Y  DI   N+     L+Y H  P+L C
Sbjct: 6   IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLCC 62
Query: 64  CFQDA--VHSFSGGLDCTLKMFDFNTQTETVIGTHDQP----IRAVEYSDEVNCILTGSW 117
            F D   +  + G +   +   D          T+++      R  +Y D+   ++  SW
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK--LIAASW 120
Query: 118 DTSVKMWDPRS---------SRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDL--- 165
           D  +++ DPR+         +    N    +K+FTM     + +VG    +V  + L   
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180
Query: 166 -RNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLD-TGPEMQKMK-YA 221
             + G I    ES LK+Q R +   P +Q GY  SSI+GR AVE+ D  G +    K +A
Sbjct: 181 EDDNGTI---EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237
Query: 222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT 281
           F+CHR+        YPVN+I F   +    T GSDG ++ W+   +K++  F +++    
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---- 293
Query: 282 SLCFSYDGNVLAIACSYN 299
                 + +V+ IACS N
Sbjct: 294 ------EDSVVKIACSDN 305

>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length = 341

Iteration: 1
 Score =  110 bits (275), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 150/318 (47%), Gaps = 46/318 (14%)
Query: 10  LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLY--DITNNNL----RLKYAHSDPVLDC 63
           +   P+D I+ +K  P S   LL +SWD ++++Y  DI   N+     L+Y H  P+L C
Sbjct: 6   IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLCC 62
Query: 64  CFQDA--VHSFSGGLDCTLKMFDFNTQTETVIGTHDQP----IRAVEYSDEVNCILTGSW 117
            F D   +  + G +   +   D          T+++      R  +Y D+   ++  SW
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK--LIAASW 120
Query: 118 DTSVKMWDPRS---------SRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDL--- 165
           D  +++ DPR+         +    N    +K+FTM     + +VG    +V  + L   
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180
Query: 166 -RNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLD-TGPEMQKMK-YA 221
             + G I    ES LK+Q R +   P +Q GY  SSI+GR AVE+ D  G +    K +A
Sbjct: 181 EDDNGTI---EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237
Query: 222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT 281
           F+CHR+        YPVN+I F   +    T GSDG ++ W+   +K++  F +++    
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---- 293
Query: 282 SLCFSYDGNVLAIACSYN 299
                 + +V+ IACS N
Sbjct: 294 ------EDSVVKIACSDN 305

>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint Protein Length = 342

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 150/318 (47%), Gaps = 46/318 (14%)
Query: 10  LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLY--DITNNNL----RLKYAHSDPVLDC 63
           +   P+D I+ +K  P S   LL +SWD ++++Y  DI   N+     L+Y H  P+L C
Sbjct: 6   IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLCC 62
Query: 64  CFQDA--VHSFSGGLDCTLKMFDFNTQTETVIGTHDQP----IRAVEYSDEVNCILTGSW 117
            F D   +  + G +   +   D          T+++      R  +Y D+   ++  SW
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK--LIAASW 120
Query: 118 DTSVKMWDPRS---------SRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDL--- 165
           D  +++ DPR+         +    N    +K+FTM     + +VG    +V  + L   
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180
Query: 166 -RNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLD-TGPEMQKMK-YA 221
             + G I    ES LK+Q R +   P +Q GY  SSI+GR AVE+ D  G +    K +A
Sbjct: 181 EDDNGTI---EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237
Query: 222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT 281
           F+CHR+        YPVN+I F   +    T GSDG ++ W+   +K++  F +++    
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---- 293
Query: 282 SLCFSYDGNVLAIACSYN 299
                 + +V+ IACS N
Sbjct: 294 ------EDSVVKIACSDN 305

>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3 Length = 349

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 149/318 (46%), Gaps = 46/318 (14%)
Query: 10  LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLY--DITNNNL----RLKYAHSDPVLDC 63
           +   P+D I+ +K  P S   LL +SWD ++++Y  DI   N+     L+Y H  P+L C
Sbjct: 6   IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLCC 62
Query: 64  CFQDA--VHSFSGGLDCTLKMFDFNTQTETVIGTHDQP----IRAVEYSDEVNCILTGSW 117
            F D   +  + G +   +   D          T+++      R  +Y D+   ++  SW
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK--LIAASW 120
Query: 118 DTSVKMWDPRS---------SRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDL--- 165
           D  +++ DPR+         +    N    +K+FT      + +VG    +V  + L   
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTXDTNSSRLIVGXNNSQVQWFRLPLC 180
Query: 166 -RNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLD-TGPEMQKMK-YA 221
             + G I    ES LK+Q R +   P +Q GY  SSI+GR AVE+ D  G +    K +A
Sbjct: 181 EDDNGTI---EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237
Query: 222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT 281
           F+CHR+        YPVN+I F   +    T GSDG ++ W+   +K++  F +++    
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---- 293
Query: 282 SLCFSYDGNVLAIACSYN 299
                 + +V+ IACS N
Sbjct: 294 ------EDSVVKIACSDN 305

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 106/257 (41%), Gaps = 41/257 (15%)
Query: 26  NSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMF 83
           N+  F +++SWD ++ L+++ N   + K+  H+  VL   F  D     SGG D  L+++
Sbjct: 77  NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVW 136
Query: 84  DFNTQTETVI--GTHDQPIRAVEYSDEVNC--ILTGSWDTSVKMWDPRSSRCVGNYTQPD 139
           +   +    +  G H   +  V +S  ++   I++G WD  VK+WD  + R V +     
Sbjct: 137 NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHT 196
Query: 140 KVFTM-------SLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK----- 187
              T        SLC      G A     +WDL   G  +    +       C       
Sbjct: 197 NYVTSVTVSPDGSLCASSDKDGVAR----LWDL-TKGEALSEMAAGAPINQICFSPNRYW 251
Query: 188 -CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP-VNAISFHQ 245
            C   ++G  +  +E +  +  ++  PE Q              G +KI P   +I++  
Sbjct: 252 MCAATEKGIRIFDLENKDII--VELAPEHQ--------------GSKKIVPECVSIAWSA 295
Query: 246 EYNTFATGGSDGYVNIW 262
           + +T  +G +D  + +W
Sbjct: 296 DGSTLYSGYTDNVIRVW 312

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 38/245 (15%)
Query: 31  LLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT 89
           +++ S D  + ++DI T   L +   H   V  C   D     SG  D  +K++D  T+T
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDPETET 270
Query: 90  --ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFT-MSL 146
              T+ G H   + ++++ D ++ +++GS DTS+++WD  +  C+   T    + + M L
Sbjct: 271 CLHTLQG-HTNRVYSLQF-DGIH-VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 327
Query: 147 CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAV 206
                V G A   V IWD++  G  +Q  +   K Q+  + C    + +V++S       
Sbjct: 328 KDNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQS-AVTCLQFNKNFVITS------- 378
Query: 207 EYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266
                                 +DG  K++ +    F +   T  +GGS G V      N
Sbjct: 379 ---------------------SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 417
Query: 267 KKRLC 271
            K +C
Sbjct: 418 TKLVC 422

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 139 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 197
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 198 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 257
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 258 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 137 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 121 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLR 166
                 +F   S+ G K++V G+    V IW+L+
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLR 166
                 +F   S+ G K++V G+    V IW+L+
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLR 166
                 +F   S+ G K++V G+    V IW+L+
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 132 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 191 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 251 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 121 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 116 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 174
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 175 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 235 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 120 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 179 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 239 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 115 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 115 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 121 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 114 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 172
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 173 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 233 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 111 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 169
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 170 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 230 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D ++K+WD    +C+  YT  
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 109/276 (39%), Gaps = 32/276 (11%)
Query: 11  NSPPEDG-ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDC-CFQD 67
           +SP  D  I +V F+P+  +FL   + D  + ++DI N  +  +   H   +     F  
Sbjct: 118 SSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 176
Query: 68  AVHSFSGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
                SG  D T++++D  T Q    +   D          +   I  GS D +V++WD 
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 127 RSSRCV--------GNYTQPDKVFTMSLC--GEKFVVGTAGRKVCIWDLRNMGYIMQRRE 176
            +   V              D V+++     G+  V G+  R V +W+L+N      + +
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN---NKSD 293
Query: 177 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY----------AFKCHR 226
           S       C   +   + +VLS +      EY+ +G + + + +            + HR
Sbjct: 294 SKTPNSGTCEVTYIGHKDFVLS-VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR 352
Query: 227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW 262
              + +  +   N  S   EYN FATG  D    IW
Sbjct: 353 ---NSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 11/163 (6%)
Query: 23  FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
           F P SN  +++ S+D +V ++D+ T   L+   AHSDPV    F +D     S   D   
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 81  KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
           +++D  +    +T+I   + P+  V++S     IL  + D  +K+WD    +C+  YT  
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
                 +F   S+ G K++V G+    V IW+L+    + + +
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 115/286 (40%), Gaps = 25/286 (8%)
Query: 18  ITAVKFAPNSNQFLLASSWDCNVSLYD-ITNNNLRLKYAHSDPVLDCCFQDAVHSFS-GG 75
           I A+ +  +S + LL++S D  + ++D  T N +      S  V+ C +  + +  + GG
Sbjct: 58  IYAMHWGTDS-RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 76  LDCTLKMFDFNTQTETV-----IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD-PRSS 129
           LD    +++  T+   V     +  H   +    + D+ N I+T S DT+  +WD     
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQ 175
Query: 130 RCVGNYTQPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK 187
           +          V ++SL  +   FV G       +WD+R    + ++  +  +     I 
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAIC 233
Query: 188 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247
            FPN   +   S +  A     D   + + M Y+        D I  I  + ++SF +  
Sbjct: 234 FFPNGNAFATGSDD--ATCRLFDLRADQELMTYS-------HDNI--ICGITSVSFSKSG 282
Query: 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
                G  D   N+WD     R      +D  ++ L  + DG  +A
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 115/286 (40%), Gaps = 25/286 (8%)
Query: 18  ITAVKFAPNSNQFLLASSWDCNVSLYD-ITNNNLRLKYAHSDPVLDCCFQDAVHSFS-GG 75
           I A+ +  +S + LL++S D  + ++D  T N +      S  V+ C +  + +  + GG
Sbjct: 58  IYAMHWGTDS-RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 76  LDCTLKMFDFNTQTETV-----IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD-PRSS 129
           LD    +++  T+   V     +  H   +    + D+ N I+T S DT+  +WD     
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQ 175
Query: 130 RCVGNYTQPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK 187
           +          V ++SL  +   FV G       +WD+R    + ++  +  +     I 
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAIC 233
Query: 188 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247
            FPN   +   S +  A     D   + + M Y+        D I  I  + ++SF +  
Sbjct: 234 FFPNGNAFATGSDD--ATCRLFDLRADQELMTYS-------HDNI--ICGITSVSFSKSG 282
Query: 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
                G  D   N+WD     R      +D  ++ L  + DG  +A
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 115/286 (40%), Gaps = 25/286 (8%)
Query: 18  ITAVKFAPNSNQFLLASSWDCNVSLYD-ITNNNLRLKYAHSDPVLDCCFQDAVHSFS-GG 75
           I A+ +  +S + L+++S D  + ++D  T N +      S  V+ C +  + +  + GG
Sbjct: 58  IYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 76  LDCTLKMFDFNTQTETV-----IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD-PRSS 129
           LD    +++  T+   V     +  H   +    + D+ N I+T S DT+  +WD     
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQ 175
Query: 130 RCVGNYTQPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK 187
           +          V ++SL  +   FV G       +WD+R    + ++  +  +     I 
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAIC 233
Query: 188 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247
            FPN   +   S +  A     D   + + M Y+        D I  I  + ++SF +  
Sbjct: 234 FFPNGNAFATGSDD--ATCRLFDLRADQELMTYS-------HDNI--ICGITSVSFSKSG 282
Query: 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
                G  D   N+WD     R      +D  ++ L  + DG  +A
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 115/286 (40%), Gaps = 25/286 (8%)
Query: 18  ITAVKFAPNSNQFLLASSWDCNVSLYD-ITNNNLRLKYAHSDPVLDCCFQDAVHSFS-GG 75
           I A+ +  +S + L+++S D  + ++D  T N +      S  V+ C +  + +  + GG
Sbjct: 58  IYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 76  LDCTLKMFDFNTQTETV-----IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD-PRSS 129
           LD    +++  T+   V     +  H   +    + D+ N I+T S DT+  +WD     
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQ 175
Query: 130 RCVGNYTQPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK 187
           +          V ++SL  +   FV G       +WD+R    + ++  +  +     I 
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAIC 233
Query: 188 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247
            FPN   +   S +  A     D   + + M Y+        D I  I  + ++SF +  
Sbjct: 234 FFPNGNAFATGSDD--ATCRLFDLRADQELMTYS-------HDNI--ICGITSVSFSKSG 282
Query: 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
                G  D   N+WD     R      +D  ++ L  + DG  +A
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 115/286 (40%), Gaps = 25/286 (8%)
Query: 18  ITAVKFAPNSNQFLLASSWDCNVSLYD-ITNNNLRLKYAHSDPVLDCCFQDAVHSFS-GG 75
           I A+ +  +S + L+++S D  + ++D  T N +      S  V+ C +  + +  + GG
Sbjct: 69  IYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 127
Query: 76  LDCTLKMFDFNTQTETV-----IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD-PRSS 129
           LD    +++  T+   V     +  H   +    + D+ N I+T S DT+  +WD     
Sbjct: 128 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQ 186
Query: 130 RCVGNYTQPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK 187
           +          V ++SL  +   FV G       +WD+R    + ++  +  +     I 
Sbjct: 187 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAIC 244
Query: 188 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247
            FPN   +   S +  A     D   + + M Y+        D I  I  + ++SF +  
Sbjct: 245 FFPNGNAFATGSDD--ATCRLFDLRADQELMTYS-------HDNI--ICGITSVSFSKSG 293
Query: 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
                G  D   N+WD     R      +D  ++ L  + DG  +A
Sbjct: 294 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 339

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 25/253 (9%)
Query: 29  QFLLASSWDCNVSLYDITNN-NLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN 86
           QF L+ SWD  + L+D+    + R    H+  VL   F  D     S   D T+K+++  
Sbjct: 443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502
Query: 87  TQTETVIGT----HDQPIRAVEYSDEV--NCILTGSWDTSVKMWDPRSSRCVGNYT-QPD 139
            + +  I      H   +  V +S       I++ SWD +VK+W+  + +          
Sbjct: 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG 562
Query: 140 KVFTMSLCGEKFVVGTAGRK--VCIWDLRNMGYIMQRRESSLKFQTRCIK------CFPN 191
            V T+++  +  +  + G+   V +WDL   G  +   E++      C        C   
Sbjct: 563 YVSTVAVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEANSVIHALCFSPNRYWLCAAT 621
Query: 192 KQGYVLSSIEGRAAVEYL--DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT 249
           + G  +  +E ++ VE L  D   E +K   +      +     K+    ++++  + +T
Sbjct: 622 EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR-----KVIYCTSLNWSADGST 676
Query: 250 FATGGSDGYVNIW 262
             +G +DG + +W
Sbjct: 677 LFSGYTDGVIRVW 689

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 16/195 (8%)
Query: 96  HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR---SSRCVGNYTQPDKVFTMSLCGEKFV 152
           H   +  V  S +    L+GSWD  +++WD     S+R    +T+       SL   + V
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV 488
Query: 153 VGTAGRKVCIWD-LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT 211
             +  R + +W+ L    Y +       +    C++  PN     + S      V+  + 
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 212 GPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC 271
                K++     H            V+ ++   + +  A+GG DG V +WD    K+L 
Sbjct: 549 --SNCKLRSTLAGHTGY---------VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 597
Query: 272 QFHRYDTGITSLCFS 286
                ++ I +LCFS
Sbjct: 598 SLEA-NSVIHALCFS 611

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 110/296 (37%), Gaps = 46/296 (15%)
Query: 18  ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQDAVHSFSG-G 75
           +T V F P  +  ++++S D  + ++D    +  R    H+D V D  F  +    +   
Sbjct: 111 VTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 76  LDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN 134
            D T+K++DF   +    +  HD  + +V      + I++ S D ++KMW+ ++  CV  
Sbjct: 170 ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT 229
Query: 135 YT-----------QPDKVFTMSLCGEKFV-VGTAGRKVCIWDLRNMGYIMQRRESSLKFQ 182
           +T             D     S   ++ V V     K C  +LR   ++++         
Sbjct: 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE--------- 280
Query: 183 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP----- 237
             CI   P      +S   G    +    GP      +     R K   +  +       
Sbjct: 281 --CISWAPESSYSSISEATGSETKKSGKPGP------FLLSGSRDKTIKMWDVSTGMCLM 332
Query: 238 --------VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF 285
                   V  + FH       +   D  + +WD  NK+ +   + ++  +TSL F
Sbjct: 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 388

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 11/158 (6%)
Query: 18  ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVL--DCCFQDAVHSF-S 73
           ++A  F  NS+  +L +S D   +L+D+ +  L   +  H   VL  D    +  ++F S
Sbjct: 157 LSACSF-TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215
Query: 74  GGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
           GG D    ++D  + Q      TH+  + +V Y    +   +GS D + +++D R+ R V
Sbjct: 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275
Query: 133 GNYTQPDKVFT-----MSLCGEKFVVGTAGRKVCIWDL 165
             Y++   +F       SL G     G     + +WD+
Sbjct: 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 121/287 (42%), Gaps = 34/287 (11%)
Query: 31  LLASSWDCNVSLYDITNNNLRLKYAHSDP---VLDCCFQDAVHSFS-GGLD--CTLKMFD 84
           +++SS D  V ++D    N   ++A + P   V+ C +  +  + + GGLD  C++    
Sbjct: 79  IVSSSQDGKVIVWDSFTTNK--EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136
Query: 85  FN-----TQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY-TQP 138
           F+        +  +  H   + A  +++    ILT S D +  +WD  S + + ++    
Sbjct: 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG 196
Query: 139 DKVFTMSLC----GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQG 194
             V  + L     G  FV G   +K  +WD+R+ G  +Q  E+  +     ++ +P+   
Sbjct: 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETH-ESDVNSVRYYPSGDA 254
Query: 195 YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG 254
           +   S +  A     D   + +   Y+      KE     I+  +++ F         G 
Sbjct: 255 FASGSDD--ATCRLYDLRADREVAIYS------KE---SIIFGASSVDFSLSGRLLFAGY 303
Query: 255 SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE 301
           +D  +N+WD     R+     ++  +++L  S DG      CS +++
Sbjct: 304 NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAF---CSGSWD 347

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 28/233 (12%)
Query: 65  FQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRA-------VEYSDEVNCILTGSW 117
           F D +   S   D T+ M+   T+ ET  G   + +R        V  S +    L+GSW
Sbjct: 50  FPDMI--LSASRDKTIIMWKL-TRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106
Query: 118 DTSVKMWD----PRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQ 173
           D ++++WD      + R VG +T+       S    + V G+  + + +W+   +     
Sbjct: 107 DGTLRLWDLTTGTTTRRFVG-HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165
Query: 174 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE 233
           + ES  ++   C++  PN    ++ S      V+            +     ++K + I 
Sbjct: 166 QDESHSEW-VSCVRFSPNSSNPIIVSCGWDKLVKV-----------WNLANCKLKTNHIG 213
Query: 234 KIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS 286
               +N ++   + +  A+GG DG   +WD    K L      D  I +LCFS
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFS 265

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 28/233 (12%)
Query: 65  FQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRA-------VEYSDEVNCILTGSW 117
           F D +   S   D T+ M+   T+ ET  G   + +R        V  S +    L+GSW
Sbjct: 27  FPDMI--LSASRDKTIIMWKL-TRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 83
Query: 118 DTSVKMWD----PRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQ 173
           D ++++WD      + R VG +T+       S    + V G+  + + +W+   +     
Sbjct: 84  DGTLRLWDLTTGTTTRRFVG-HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 142
Query: 174 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE 233
           + ES  ++   C++  PN    ++ S      V+            +     ++K + I 
Sbjct: 143 QDESHSEW-VSCVRFSPNSSNPIIVSCGWDKLVKV-----------WNLANCKLKTNHIG 190
Query: 234 KIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS 286
               +N ++   + +  A+GG DG   +WD    K L      D  I +LCFS
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFS 242

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 64  CFQ-DAVHSFSGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSV 121
           C Q D     SG  D T+K++D NT + + ++  H   +  ++Y + V  I+TGS D++V
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV--IITGSSDSTV 195
Query: 122 KMWDPRSSRCVGNYTQP-DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRR 175
           ++WD  +   +       + V  +       V  +  R + +WD+ +   I  RR
Sbjct: 196 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.98
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.85
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.75
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.74
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.73
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.7
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.7
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.69
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.66
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.65
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.55
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.54
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.51
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.51
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.49
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.48
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.47
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.47
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.47
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.46
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.45
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.45
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.43
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.4
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.4
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.38
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.36
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.34
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.31
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.31
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.26
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.25
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.24
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.22
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.22
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.22
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.21
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.2
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.18
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.13
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.12
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.11
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.09
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.07
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.07
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.05
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.05
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.03
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.02
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.97
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.95
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.94
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.93
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.93
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.91
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.87
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.84
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.82
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.78
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.72
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.68
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.68
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.65
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.65
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.59
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.58
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.58
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.5
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.49
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.48
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.46
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.41
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.4
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.35
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.35
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.34
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.31
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.28
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.24
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.22
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.21
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.2
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.16
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.12
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.06
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.05
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.03
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.95
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.93
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.91
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.76
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.69
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.5
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.49
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.43
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.35
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.31
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.16
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.12
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.09
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.04
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.93
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.93
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.92
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.8
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.78
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.73
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.69
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.65
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.64
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.58
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.3
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.25
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.13
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.86
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.74
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.63
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.59
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.56
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.42
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.33
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.21
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.11
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	94.8
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.74
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.65
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.6
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	94.58
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.47
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.18
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.07
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	93.46
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.45
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.33
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.75
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.46
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.41
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	92.4
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.33
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	91.17
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	90.83
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	90.43
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	89.8
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	89.57
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	89.36
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	88.9
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	87.65
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	86.47
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	84.8
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	83.79
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	83.01
3kya_A	496	Putative phosphatase; structural genomics, joint c	82.94
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.76
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	82.59
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	82.56
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	81.58
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	81.27
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	80.91
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	80.36
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	80.28

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6e-40  Score=290.47  Aligned_cols=319  Identities=34%  Similarity=0.667  Sum_probs=254.7

Q ss_pred             eeecCCCCCCCeeEEEEecCC--CcEEEEEECCCcEEEEECCC-CeE--EEEecCCCceeeEEEe-CCceEEEEecCCcE
Q psy11885          7 EYSLNSPPEDGITAVKFAPNS--NQFLLASSWDCNVSLYDITN-NNL--RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTL   80 (327)
Q Consensus         7 ~~~~~~~~~~~I~~i~fs~~~--~~~l~s~~~d~~i~iwd~~~-~~~--~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i   80 (327)
                      .......|.+.|++++|+|++  +.+|++++.|+.|++||+.+ ++.  .....|..+|.+++|+ ++.++++++.|+.|
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v  110 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA  110 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcE
Confidence            344556788999999999964  58999999999999999987 443  4455799999999995 77899999999999


Q ss_pred             EEEEcCCCceeeeecCCccEEEEEE--eCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCC
Q psy11885         81 KMFDFNTQTETVIGTHDQPIRAVEY--SDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGR  158 (327)
Q Consensus        81 ~vwd~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  158 (327)
                      ++||++++....+..|..+|.+++|  +++++.|++++.|+.|++||+++++++..+..+..+.++.+.+..+++++.++
T Consensus       111 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 3mmy_A          111 KMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAER  190 (368)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGG
T ss_pred             EEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCC
Confidence            9999998887777789999999999  89999999999999999999999999988888888888888888999999999


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCc----eEEEeecCeEEEEEccCCcccccceeeeeeeeecc---CC
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQG----YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE---DG  231 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~---~~  231 (327)
                      .+++||++..................++.+.+....    +++++.++.+.+|.++..... .....+..|....   ..
T Consensus       191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~  269 (368)
T 3mmy_A          191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSA  269 (368)
T ss_dssp             CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CC
T ss_pred             cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeeecccccccc
Confidence            999999987654333333333334456666665544    888888888888776654321 2223334443211   11


Q ss_pred             eeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCC-CCCCC
Q psy11885        232 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETP-PDPIP  310 (327)
Q Consensus       232 ~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~-~~~~~  310 (327)
                      ..+..+|.+++|+|++++|++|+.||.|++||+.+++.+..+..|..+|++++|||||++||+++++++..... -+.-.
T Consensus       270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~  349 (368)
T 3mmy_A          270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK  349 (368)
T ss_dssp             CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTS
T ss_pred             cccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCCc
Confidence            22334699999999999999999999999999999999999999999999999999999999999887655542 34457


Q ss_pred             CCcEEEEEcccccccCC
Q psy11885        311 PNNIFIRHVTDQETKPK  327 (327)
Q Consensus       311 ~~~~~~~~~~~~~~~~~  327 (327)
                      .+.|++..+.+ +-+||
T Consensus       350 ~~~i~~~~~~~-~~~p~  365 (368)
T 3mmy_A          350 KNYIFLRNAAE-ELKPR  365 (368)
T ss_dssp             CCEEEEECCTT-TTSBC
T ss_pred             cceeeehhcCc-ccCcc
Confidence            78999999885 66664

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-40  Score=292.96  Aligned_cols=309  Identities=25%  Similarity=0.464  Sum_probs=253.4

Q ss_pred             eecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----EEEEecCCCceeeEEEe-CCc-eEEEEecCCcEE
Q psy11885          8 YSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LRLKYAHSDPVLDCCFQ-DAV-HSFSGGLDCTLK   81 (327)
Q Consensus         8 ~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~h~~~v~~~~~~-~~~-~~~sgs~Dg~i~   81 (327)
                      +.....|++.|++++|+|+ +.+|++++.|+.|++||+.+++    ......|...|.+++|+ ++. .+++|+.|+.|+
T Consensus         4 ~~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence            3445678899999999995 5789999999999999998876    56667899999999995 778 899999999999


Q ss_pred             EEEc-CCCceeeeec--CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC---------CceeeeeeCCCcEEEEecCCC
Q psy11885         82 MFDF-NTQTETVIGT--HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS---------SRCVGNYTQPDKVFTMSLCGE  149 (327)
Q Consensus        82 vwd~-~~~~~~~~~~--h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~---------~~~~~~~~~~~~~~~~~~~~~  149 (327)
                      +||+ +++....+..  |...|.+++|++ ++.+++++.|+.|++||+++         ++++..+.....+.++.++++
T Consensus        83 ~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (342)
T 1yfq_A           83 KVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             EEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence            9999 8887777788  999999999999 99999999999999999988         777777776677888888888


Q ss_pred             eEEEEeCCCeEEEEECCC-CccceeeecccceeeeEEeEEee-CCCceEEEeecCeEEEEEccCC--cccccceeeeeee
Q psy11885        150 KFVVGTAGRKVCIWDLRN-MGYIMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTG--PEMQKMKYAFKCH  225 (327)
Q Consensus       150 ~~~~~~~d~~v~iwD~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~h  225 (327)
                      .+++++.++.|++||+++ .................++.++| ++..+++++.++.+.+|.++..  .........+..|
T Consensus       162 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  241 (342)
T 1yfq_A          162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence            899999999999999997 54322223333344568889999 8888999999999888777664  1112333444555


Q ss_pred             eeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcC-CcceEEEEECCCCCEEEEEEcccc-ccC
Q psy11885        226 RIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY-DTGITSLCFSYDGNVLAIACSYNY-ELE  303 (327)
Q Consensus       226 ~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~-~~~v~~l~fspdg~~la~~~~~~~-~~~  303 (327)
                      .....+..+..+|.+++|+|++++|++|+.||.|++||+.+++.+..+..| ..+|++++  |+|++||+++.++. ...
T Consensus       242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~  319 (342)
T 1yfq_A          242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred             cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccc
Confidence            432222233347899999999999999999999999999999999999988 88999999  99999999999988 555


Q ss_pred             CC---CCCCCCCcEEEEEcc
Q psy11885        304 TP---PDPIPPNNIFIRHVT  320 (327)
Q Consensus       304 ~~---~~~~~~~~~~~~~~~  320 (327)
                      ..   +.+.+++.|||+++.
T Consensus       320 ~~~~~~~~~~~~~i~~~~~~  339 (342)
T 1yfq_A          320 AAIDQTIELNASSIYIIFDY  339 (342)
T ss_dssp             SSSCTTSCCCCCEEEEEETC
T ss_pred             ccccccCCCCCceEEEeccc
Confidence            54   567889999999933

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.5e-41  Score=303.60  Aligned_cols=274  Identities=20%  Similarity=0.285  Sum_probs=222.7

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .|.+.|++++|+|+ +.+|++|+.|++|++||+.+++. ....+|.+.|.+++|+ ++..+++|+.|++|++||+++...
T Consensus       106 gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~  184 (410)
T 1vyh_C          106 GHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC  184 (410)
T ss_dssp             CCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred             ccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Confidence            47789999999995 57999999999999999999885 4455799999999995 778999999999999999987765


Q ss_pred             -eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-E--EEEecCCCeEEEEeCCCeEEEEECC
Q psy11885         91 -TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-V--FTMSLCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        91 -~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~d~~v~iwD~~  166 (327)
                       ..+.+|...|.+++|+|+++.|++|+.|++|++||+++++++..+..+.. +  ..+.+++..+++++.|++|++||++
T Consensus       185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~  264 (410)
T 1vyh_C          185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA  264 (410)
T ss_dssp             EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence             35678999999999999999999999999999999999999888875432 3  4455678899999999999999998


Q ss_pred             CCccceeeecccceeeeEEeEEeeC--------------------CCceEEEeecCeEEEEEccCCcccccceeeeeeee
Q psy11885        167 NMGYIMQRRESSLKFQTRCIKCFPN--------------------KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR  226 (327)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~  226 (327)
                      +.+.......  ......++.+.|+                    +..+++++.++.+.+|....+..    ...+..|.
T Consensus       265 ~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~----~~~~~~h~  338 (410)
T 1vyh_C          265 TKECKAELRE--HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC----LMTLVGHD  338 (410)
T ss_dssp             TCCEEEEECC--CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE----EEEEECCS
T ss_pred             CCceeeEecC--CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce----EEEEECCC
Confidence            7654322222  2233567777775                    34567777788877755543321    22223332


Q ss_pred             eccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccccc
Q psy11885        227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYEL  302 (327)
Q Consensus       227 ~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~  302 (327)
                               .+|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++.+||+|+.++...
T Consensus       339 ---------~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~  405 (410)
T 1vyh_C          339 ---------NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK  405 (410)
T ss_dssp             ---------SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             ---------CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence                     2588999999999999999999999999999998889999999999999999999999998765443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.9e-40  Score=288.13  Aligned_cols=272  Identities=17%  Similarity=0.239  Sum_probs=213.0

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .|.+.|++++|+|+ +.+|++++.|++|++||+++++.. ....|..+|.+++|+ ++..+++|+.|++|++||++++..
T Consensus        11 ~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~   89 (304)
T 2ynn_A           11 NRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK   89 (304)
T ss_dssp             EECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE
Confidence            46789999999995 589999999999999999998854 445688999999995 788999999999999999998765


Q ss_pred             -eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc-eeeeeeCC-CcEEEE--ec-CCCeEEEEeCCCeEEEEE
Q psy11885         91 -TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR-CVGNYTQP-DKVFTM--SL-CGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        91 -~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~-~~~~~~~~-~~~~~~--~~-~~~~~~~~~~d~~v~iwD  164 (327)
                       ..+..|...|.+++|+|++++|++|+.|++|++||++++. +...+..+ ..+.++  ++ ++..+++++.|++|++||
T Consensus        90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd  169 (304)
T 2ynn_A           90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS  169 (304)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred             EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence             4577899999999999999999999999999999998874 44445443 334444  44 356899999999999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEee--CCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                      +++.......... .......+.+.+  ++..+++++.++.+.+|......    ....+..|.         .+|.+++
T Consensus       170 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~----~~~~~~~h~---------~~v~~~~  235 (304)
T 2ynn_A          170 LGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS----CVATLEGHM---------SNVSFAV  235 (304)
T ss_dssp             TTCSSCSEEEECC-CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE----EEEEEECCS---------SCEEEEE
T ss_pred             CCCCCccceeccC-CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc----cceeeCCCC---------CCEEEEE
Confidence            9876543222111 111234556665  44567788888888876554332    222233332         2588999


Q ss_pred             EecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCC--EEEEEEccc
Q psy11885        243 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGN--VLAIACSYN  299 (327)
Q Consensus       243 ~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~--~la~~~~~~  299 (327)
                      |+|++++|++|+.||+|++||..+++.+..+..+...+++++|+|+|+  +||+|+.++
T Consensus       236 ~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g  294 (304)
T 2ynn_A          236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG  294 (304)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc
Confidence            999999999999999999999999999999988888999999999986  588775443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.7e-40  Score=290.79  Aligned_cols=280  Identities=15%  Similarity=0.196  Sum_probs=226.1

Q ss_pred             eecCCCCCCCeeEEEEecC---CCcEEEEEECCCcEEEEECCCCeEE---EEecCCCceeeEEEe-CCceEEEEecCCcE
Q psy11885          8 YSLNSPPEDGITAVKFAPN---SNQFLLASSWDCNVSLYDITNNNLR---LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTL   80 (327)
Q Consensus         8 ~~~~~~~~~~I~~i~fs~~---~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i   80 (327)
                      +.....|++.|++++|+|+   ++.+|++|+.|++|+|||+..++..   ...+|...|.+++|+ ++..+++++.|++|
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i  104 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI  104 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            3445679999999999984   2468999999999999999887643   244799999999995 77889999999999


Q ss_pred             EEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC---cEEEEecCCCeEEEEeC
Q psy11885         81 KMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD---KVFTMSLCGEKFVVGTA  156 (327)
Q Consensus        81 ~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  156 (327)
                      ++||++++.. ..+..|...+.+++|+|++++|++|+.|++|++||+++++....+..+.   ..++++++++.+++++.
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~  184 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI  184 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC
Confidence            9999988765 3466788889999999999999999999999999999988877766533   23556778899999999


Q ss_pred             CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        157 GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       157 d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      |+.|++||+++.+.+.....  ......+++++|+++.+++++.++.+.+|.......    ...+..|.         .
T Consensus       185 dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~---------~  249 (321)
T 3ow8_A          185 DGIINIFDIATGKLLHTLEG--HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL----AGTLSGHA---------S  249 (321)
T ss_dssp             TSCEEEEETTTTEEEEEECC--CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE----EEEECCCS---------S
T ss_pred             CCeEEEEECCCCcEEEEEcc--cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce----eEEEcCCC---------C
Confidence            99999999998764432222  223457888999988888999888888865543321    12223332         2


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccccc
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYEL  302 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~  302 (327)
                      +|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|++++|+|+|++|++++.++...
T Consensus       250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~  315 (321)
T 3ow8_A          250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIH  315 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            588999999999999999999999999999999999999999999999999999999998665443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.9e-40  Score=290.36  Aligned_cols=278  Identities=13%  Similarity=0.161  Sum_probs=207.5

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEEC------CCcEEEEECCCCeE-----EEEecCCCceeeEEEeCCceEEEEecCCcE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSW------DCNVSLYDITNNNL-----RLKYAHSDPVLDCCFQDAVHSFSGGLDCTL   80 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~------d~~i~iwd~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i   80 (327)
                      ..|++.|++++|+|+ +++|+++|.      |+.|++|+..++..     .....|...|.+++|++...+++++.||+|
T Consensus        39 ~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred             ccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence            347889999999996 589999997      77899999877653     233468889999999877788899999999


Q ss_pred             EEEEcCCCcee-----eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEE--ecCCC-eE
Q psy11885         81 KMFDFNTQTET-----VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTM--SLCGE-KF  151 (327)
Q Consensus        81 ~vwd~~~~~~~-----~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~--~~~~~-~~  151 (327)
                      ++||+.+++..     ...+|+..|.+++|+|++++|++|+.|++|++||+++++++..+..+ ..+.++  ++.++ .+
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~  197 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF  197 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence            99999876532     23479999999999999999999999999999999999998887754 344444  44554 68


Q ss_pred             EEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceeeeeeeeeccC
Q psy11885        152 VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED  230 (327)
Q Consensus       152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~  230 (327)
                      ++++.|++|++||+++.+...............+++++|+.. .+++++.++.+.+|......    ....+..|.    
T Consensus       198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~----~~~~~~~~~----  269 (357)
T 4g56_B          198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD----SAQTSAVHS----  269 (357)
T ss_dssp             EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG----GCEEECCCS----
T ss_pred             eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc----EeEEEeccc----
Confidence            899999999999999876543333233333457788888754 45567777887775544322    122222222    


Q ss_pred             CeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECC-CCCEEEEEEccccccCC
Q psy11885        231 GIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY-DGNVLAIACSYNYELET  304 (327)
Q Consensus       231 ~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp-dg~~la~~~~~~~~~~~  304 (327)
                           .+|++++|+|++ ++||+|+.|++|+|||+.+++.+..+ +|...|++|+||| |+++||+++.++..+.+
T Consensus       270 -----~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW  339 (357)
T 4g56_B          270 -----QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHH  339 (357)
T ss_dssp             -----SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             -----eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence                 258999999987 57899999999999999998776554 7889999999999 89999999865544443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.2e-40  Score=290.88  Aligned_cols=271  Identities=13%  Similarity=0.144  Sum_probs=202.4

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC------------CeEEEEecCCCceeeEEEeCCceEEEEecCCcE
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN------------NNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTL   80 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i   80 (327)
                      .++..|++++|+|+ +++|++++ |+++++||...            +.......|..+|.+++|++...+++|+.||+|
T Consensus        28 ~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v  105 (344)
T 4gqb_B           28 CMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV  105 (344)
T ss_dssp             SCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred             cccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence            35678999999996 57787777 88888887321            112223346678999999877899999999999


Q ss_pred             EEEEcCCCcee-----eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEE--EecCCC-eE
Q psy11885         81 KMFDFNTQTET-----VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFT--MSLCGE-KF  151 (327)
Q Consensus        81 ~vwd~~~~~~~-----~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~--~~~~~~-~~  151 (327)
                      ++||+++++..     ...+|+..|++++|+|++++|++|+.|++|++||+++++++..+..+ ..+.+  +++.+. .+
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  185 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF  185 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence            99999887532     24579999999999999999999999999999999999999888754 34444  445553 68


Q ss_pred             EEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceeeeeeeeeccC
Q psy11885        152 VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED  230 (327)
Q Consensus       152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~  230 (327)
                      ++++.|++|++||+++.+...............+++++|.+. .+++++.++.+.+|......    ....+..|.    
T Consensus       186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~----~~~~~~~h~----  257 (344)
T 4gqb_B          186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS----CVLSSAVHS----  257 (344)
T ss_dssp             EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC------CCEEEECCS----
T ss_pred             eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc----EEEEEcCCC----
Confidence            899999999999999876543332222223356778888654 45667778887775544332    222333343    


Q ss_pred             CeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCE-EEEEEccc
Q psy11885        231 GIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNV-LAIACSYN  299 (327)
Q Consensus       231 ~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~-la~~~~~~  299 (327)
                           .+|++++|+|++ ++||+||.|++|+|||+.+++. ..+.+|...|++|+|||+|+. ||+++.++
T Consensus       258 -----~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~  322 (344)
T 4gqb_B          258 -----QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDH  322 (344)
T ss_dssp             -----SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             -----CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence                 258999999998 5799999999999999988765 456789999999999999975 45555443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-39  Score=286.33  Aligned_cols=275  Identities=20%  Similarity=0.320  Sum_probs=221.8

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|++++|+|+ +++|++++.|++|++||..+++. .....|...|.+++|+ ++..+++|+.|+.|++|++.+..
T Consensus        52 ~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~  130 (340)
T 1got_B           52 RGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred             cCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence            457889999999995 58999999999999999988874 4445688899999995 78899999999999999998653


Q ss_pred             e-----eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEE
Q psy11885         90 E-----TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVC  161 (327)
Q Consensus        90 ~-----~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~  161 (327)
                      .     ..+.+|...|.++.|++++ .+++++.|++|++||+++++++..+..+. .+  +.+++++..+++++.|++|+
T Consensus       131 ~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~  209 (340)
T 1got_B          131 GNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             BSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            1     3467899999999999876 48999999999999999999888876533 34  44566778899999999999


Q ss_pred             EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885        162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI  241 (327)
Q Consensus       162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  241 (327)
                      +||+++........  .......+++++|++..+++++.++.+.+|.+......    ..+. |.      .+...|.++
T Consensus       210 ~wd~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~----~~~~-~~------~~~~~v~~~  276 (340)
T 1got_B          210 LWDVREGMCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL----MTYS-HD------NIICGITSV  276 (340)
T ss_dssp             EEETTTCSEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE----EEEC-CT------TCCSCEEEE
T ss_pred             EEECCCCeeEEEEc--CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE----EEEc-cC------CcccceEEE
Confidence            99999875432222  12234578899999999999999999888655433211    1111 10      011247899


Q ss_pred             EEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885        242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       242 ~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                      +|+|++++|++|+.|+.|++||..+++.+..+.+|..+|++++|+|||++||+|+.++..
T Consensus       277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i  336 (340)
T 1got_B          277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence            999999999999999999999999999888999999999999999999999999866543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.4e-39  Score=287.22  Aligned_cols=275  Identities=17%  Similarity=0.324  Sum_probs=221.4

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|++++|+|+ +.+|++||.|++|++||..+++. .....|...|.+++|+ ++..+++|+.|+.+++|++....
T Consensus        61 ~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~  139 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK  139 (354)
T ss_dssp             ECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred             cCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence            457889999999996 57999999999999999988774 4445678889999994 78899999999999999986431


Q ss_pred             -------eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEE--EEec--CCCeEEEEeCC
Q psy11885         90 -------ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVF--TMSL--CGEKFVVGTAG  157 (327)
Q Consensus        90 -------~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~--~~~~--~~~~~~~~~~d  157 (327)
                             ...+..|...|.+++|++++..|++++.|++|++||+++++++..+..+. .+.  .+.+  .++.+++++.|
T Consensus       140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D  219 (354)
T 2pbi_B          140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD  219 (354)
T ss_dssp             TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT
T ss_pred             cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC
Confidence                   23466799999999999999999999999999999999999988887543 343  3444  35789999999


Q ss_pred             CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885        158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP  237 (327)
Q Consensus       158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  237 (327)
                      ++|++||+++.+.+....  .......+++++|+++.+++++.++.+.+|........    ..+..+       .+...
T Consensus       220 g~v~~wd~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~----~~~~~~-------~~~~~  286 (354)
T 2pbi_B          220 KKAMVWDMRSGQCVQAFE--THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV----AIYSKE-------SIIFG  286 (354)
T ss_dssp             SCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE----EEECCT-------TCCSC
T ss_pred             CeEEEEECCCCcEEEEec--CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE----EEEcCC-------Ccccc
Confidence            999999999876433222  22234678899999999999999998888554432211    111100       01124


Q ss_pred             eeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      +.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|++++|||||++||+|+.++.
T Consensus       287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence            778999999999999999999999999999988889999999999999999999999986654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.3e-38  Score=276.04  Aligned_cols=289  Identities=13%  Similarity=0.134  Sum_probs=212.6

Q ss_pred             CCCCC-CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE--E--EecCCCceeeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885         12 SPPED-GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR--L--KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        12 ~~~~~-~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~--~--~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~   85 (327)
                      ..|.+ .|.+++|+|+ +.+||+|+.|++|+|||+.+++..  .  ..+|...|.+++|+ ++.++++|+.|++|++||+
T Consensus        12 ~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~   90 (345)
T 3fm0_A           12 PAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK   90 (345)
T ss_dssp             CCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             cCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence            34444 8999999995 579999999999999999887632  1  23699999999995 7889999999999999999


Q ss_pred             CCCce---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc---eeeeeeCC-Cc--EEEEecCCCeEEEEeC
Q psy11885         86 NTQTE---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR---CVGNYTQP-DK--VFTMSLCGEKFVVGTA  156 (327)
Q Consensus        86 ~~~~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~---~~~~~~~~-~~--~~~~~~~~~~~~~~~~  156 (327)
                      +.+..   ..+.+|..+|.+++|+|++++|++|+.|++|++||+++++   ++..+..+ ..  .+.+++++..+++++.
T Consensus        91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~  170 (345)
T 3fm0_A           91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY  170 (345)
T ss_dssp             CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET
T ss_pred             cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC
Confidence            87643   3467899999999999999999999999999999998764   33444332 22  3456677889999999


Q ss_pred             CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccccee-----eeee-eeeccC
Q psy11885        157 GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY-----AFKC-HRIKED  230 (327)
Q Consensus       157 d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~-h~~~~~  230 (327)
                      |++|++||+++.+...............+++++|+++.+++++.++.+.+|.............     ...+ ..... 
T Consensus       171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  249 (345)
T 3fm0_A          171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG-  249 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS-
T ss_pred             CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC-
Confidence            9999999998654322212222333467889999999999999999988865422211111100     0000 00000 


Q ss_pred             CeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee---------eeecCcCCcceEEEEECCCCC-EEEEEEcccc
Q psy11885        231 GIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR---------LCQFHRYDTGITSLCFSYDGN-VLAIACSYNY  300 (327)
Q Consensus       231 ~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~---------~~~~~~~~~~v~~l~fspdg~-~la~~~~~~~  300 (327)
                        .|...|.+++|+|++..||+++.|+.|++|+......         .....+|...|++|+|+|++. +||+|+.++.
T Consensus       250 --~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~  327 (345)
T 3fm0_A          250 --FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE  327 (345)
T ss_dssp             --SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             --CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence              0122588999999999999999999999999765421         122357888999999999984 8988876654


Q ss_pred             ccCC
Q psy11885        301 ELET  304 (327)
Q Consensus       301 ~~~~  304 (327)
                      ...+
T Consensus       328 v~~W  331 (345)
T 3fm0_A          328 VAFW  331 (345)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.7e-37  Score=270.12  Aligned_cols=271  Identities=17%  Similarity=0.254  Sum_probs=208.6

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC-----e-EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-----N-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFD   84 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~-----~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd   84 (327)
                      ..|.+.|++++|+|+++.+|++|+.|++|++||+...     . +....+|...|.+++|+ ++.+++||+.|++|++||
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd   93 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD   93 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            5688999999999976689999999999999998642     1 23445799999999995 788999999999999999


Q ss_pred             cCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEE--ecC------CCeEEEE
Q psy11885         85 FNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTM--SLC------GEKFVVG  154 (327)
Q Consensus        85 ~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~--~~~------~~~~~~~  154 (327)
                      +++++. ..+.+|..+|.+++|+|+++.|++|+.|++|++||++. +++..+..+ ..+..+  .+.      +..++++
T Consensus        94 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~  172 (319)
T 3frx_A           94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA  172 (319)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred             CCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence            998765 45778999999999999999999999999999999964 455555433 334333  332      3379999


Q ss_pred             eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeee
Q psy11885        155 TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEK  234 (327)
Q Consensus       155 ~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~  234 (327)
                      +.|+.|++||+++.+......  .+.....+++++|++..+++++.++.+.+|.......    ...+..+         
T Consensus       173 ~~d~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~---------  237 (319)
T 3frx_A          173 GNDKMVKAWNLNQFQIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA----MYTLSAQ---------  237 (319)
T ss_dssp             ETTSCEEEEETTTTEEEEEEC--CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE----EEEEECC---------
T ss_pred             eCCCEEEEEECCcchhheeec--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EEEecCC---------
Confidence            999999999998765332211  2233457888999998889999898888865544321    1111111         


Q ss_pred             EEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC--------cCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        235 IYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH--------RYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       235 ~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~--------~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                       .+|.+++|+|++.+|++++. +.+++|++.....+..+.        .+...+.+++|||||++||+|+.++.
T Consensus       238 -~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~  309 (319)
T 3frx_A          238 -DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV  309 (319)
T ss_dssp             -SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             -CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCce
Confidence             15889999999999998875 459999988776655442        24557899999999999999985543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2e-38  Score=283.95  Aligned_cols=282  Identities=19%  Similarity=0.373  Sum_probs=216.9

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|++++|+|+ +.+|++|+.|++|+|||..+++. .....|...|.+++|+ ++..+++|+.|+.+++||+.+..
T Consensus        63 ~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~  141 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQA  141 (380)
T ss_dssp             CCCSSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred             cccccEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence            458899999999995 57999999999999999998885 4455788999999995 78899999999999999987532


Q ss_pred             --------eeeeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeee------CCCcEEEEec---CCCeE
Q psy11885         90 --------ETVIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYT------QPDKVFTMSL---CGEKF  151 (327)
Q Consensus        90 --------~~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~------~~~~~~~~~~---~~~~~  151 (327)
                              ...+.+|...|.++.|.|+ +..|++|+.|++|++||+++++++..+.      +...+.++.+   +++.+
T Consensus       142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  221 (380)
T 3iz6_a          142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF  221 (380)
T ss_dssp             SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEE
T ss_pred             cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEE
Confidence                    1346789999999999986 4579999999999999999998876652      1233555443   56789


Q ss_pred             EEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCC
Q psy11885        152 VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDG  231 (327)
Q Consensus       152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~  231 (327)
                      ++|+.|++|++||++......... ..+.....+++++|++..+++++.++.+.+|....+....    .+..+..... 
T Consensus       222 ~sgs~D~~v~~wd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~----~~~~~~~~~~-  295 (380)
T 3iz6_a          222 ISGSCDTTVRLWDLRITSRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ----VYNREPDRND-  295 (380)
T ss_dssp             EEEETTSCEEEEETTTTCCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE----EECCCCSSSC-
T ss_pred             EEEECCCeEEEEECCCCCcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE----Eecccccccc-
Confidence            999999999999998543222111 1122345788999999999999999998886655433211    1111111000 


Q ss_pred             eeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeec----CcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885        232 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF----HRYDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       232 ~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~----~~~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                       .+...+.+++|+|++++|++|+.||.|++||...++.+..+    .+|...|++++|||||++||+|+.++..
T Consensus       296 -~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i  368 (380)
T 3iz6_a          296 -NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL  368 (380)
T ss_dssp             -CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred             -cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence             11124789999999999999999999999999888777665    5788899999999999999999755443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.2e-37  Score=265.45  Aligned_cols=273  Identities=19%  Similarity=0.268  Sum_probs=217.4

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|++++|+|+ +++|++++.|+.|++|+..+++.. ....|...|.+++|+ ++..+++|+.|+.|++||++++.
T Consensus        20 ~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~   98 (312)
T 4ery_A           20 AGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK   98 (312)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence            457889999999995 579999999999999999888754 445799999999995 78899999999999999998876


Q ss_pred             e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      . ..+..|...|.+++|+|+++.|++|+.|++|++||+++++++..+..+. .+  +.+++++..+++++.|+.|++||+
T Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~  178 (312)
T 4ery_A           99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  178 (312)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            5 4567899999999999999999999999999999999998888776533 33  455667889999999999999999


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      ++.+.+.... .........+++.|+++.+++++.++.+.+|.+.....    ...+..|.....      .+......+
T Consensus       179 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~------~~~~~~~~~  247 (312)
T 4ery_A          179 ASGQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKY------CIFANFSVT  247 (312)
T ss_dssp             TTCCEEEEEC-CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE----EEEECSSCCSSS------CCCEEEECS
T ss_pred             CCCceeeEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE----EEEEEecCCceE------EEEEEEEeC
Confidence            9876433221 11222346778889988888888888888765544321    112222221100      122222346


Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885        246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~  296 (327)
                      ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++||+++
T Consensus       248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  298 (312)
T 4ery_A          248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA  298 (312)
T ss_dssp             SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence            788999999999999999999999999999999999999999999999987

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.9e-37  Score=292.90  Aligned_cols=280  Identities=15%  Similarity=0.194  Sum_probs=212.7

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|++++|+|++...|++++.|++|++||..+++.. ...+|...|.+++|+ ++.+++||+.|++|++||+.++.
T Consensus       144 ~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~  223 (611)
T 1nr0_A          144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT  223 (611)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc
Confidence            4577899999999975557999999999999999888754 445799999999995 78899999999999999998776


Q ss_pred             ee-ee-e------cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee-------------------------
Q psy11885         90 ET-VI-G------THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-------------------------  136 (327)
Q Consensus        90 ~~-~~-~------~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~-------------------------  136 (327)
                      .. .+ .      +|...|.+++|+|++++|++++.|++|++||+++++++..+.                         
T Consensus       224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d  303 (611)
T 1nr0_A          224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN  303 (611)
T ss_dssp             EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred             EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence            53 33 2      699999999999999999999999999999999887654432                         


Q ss_pred             ------------------CC-CcE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeec-------------------
Q psy11885        137 ------------------QP-DKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRE-------------------  176 (327)
Q Consensus       137 ------------------~~-~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~-------------------  176 (327)
                                        .+ ..+  ++++++++.+++++.|++|++||+++.........                   
T Consensus       304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s  383 (611)
T 1nr0_A          304 GFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT  383 (611)
T ss_dssp             CCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE
T ss_pred             CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEE
Confidence                              11 123  34566788999999999999999976432110000                   


Q ss_pred             -------------------------------------c------------------------cceeeeEEeEEeeCCCce
Q psy11885        177 -------------------------------------S------------------------SLKFQTRCIKCFPNKQGY  195 (327)
Q Consensus       177 -------------------------------------~------------------------~~~~~~~~~~~~~~~~~~  195 (327)
                                                           .                        .......+++++|+++.+
T Consensus       384 ~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~l  463 (611)
T 1nr0_A          384 VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFV  463 (611)
T ss_dssp             EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEE
T ss_pred             EEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEE
Confidence                                                 0                        000113467778888888


Q ss_pred             EEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC-ceeeee--
Q psy11885        196 VLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN-KKRLCQ--  272 (327)
Q Consensus       196 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~-~~~~~~--  272 (327)
                      ++++.++.+.+|........ ... . ..|         ...|++++|+||+++||+++.|++|++||+.+ ++.+..  
T Consensus       464 asgs~D~~v~lwd~~~~~~~-~~~-~-~~h---------~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~  531 (611)
T 1nr0_A          464 AVGGQDSKVHVYKLSGASVS-EVK-T-IVH---------PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS  531 (611)
T ss_dssp             EEEETTSEEEEEEEETTEEE-EEE-E-EEC---------SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             EEeCCCCeEEEEEccCCcee-eee-c-cCC---------CCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee
Confidence            88888888877665432110 000 1 122         22589999999999999999999999999987 555443  


Q ss_pred             cCcCCcceEEEEECCCCCEEEEEEccccccC
Q psy11885        273 FHRYDTGITSLCFSYDGNVLAIACSYNYELE  303 (327)
Q Consensus       273 ~~~~~~~v~~l~fspdg~~la~~~~~~~~~~  303 (327)
                      ...|...|++++|||||++||+|+.+.....
T Consensus       532 ~~~H~~~V~~v~fspdg~~lasgs~D~~v~l  562 (611)
T 1nr0_A          532 WTFHTAKVACVSWSPDNVRLATGSLDNSVIV  562 (611)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eeecccceeEEEECCCCCEEEEEECCCcEEE
Confidence            2348889999999999999999987654433

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.6e-38  Score=296.52  Aligned_cols=277  Identities=15%  Similarity=0.186  Sum_probs=212.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--------cCCCceeeEEEe-CCceEEEEecCCcEEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--------AHSDPVLDCCFQ-DAVHSFSGGLDCTLKM   82 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~h~~~v~~~~~~-~~~~~~sgs~Dg~i~v   82 (327)
                      ..|.+.|++++|+|+ +++|++++.|++|++||+.+++....+        +|.+.|.+++|+ ++.+++|++.|++|++
T Consensus       187 ~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~l  265 (611)
T 1nr0_A          187 GEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI  265 (611)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ccccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            457889999999995 579999999999999999888754433        699999999995 7889999999999999


Q ss_pred             EEcCCCcee--------------------------------------------eeecCCccEEEEEEeCCCCEEEEEECC
Q psy11885         83 FDFNTQTET--------------------------------------------VIGTHDQPIRAVEYSDEVNCILTGSWD  118 (327)
Q Consensus        83 wd~~~~~~~--------------------------------------------~~~~h~~~V~~l~~~~~~~~l~sgs~d  118 (327)
                      ||+++++..                                            .+.+|...|.+++|+|++++|++++.|
T Consensus       266 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D  345 (611)
T 1nr0_A          266 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE  345 (611)
T ss_dssp             EETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence            999865321                                            234688999999999999999999999


Q ss_pred             CeEEEEeCCCCceeeeee--------------------------------------------------------------
Q psy11885        119 TSVKMWDPRSSRCVGNYT--------------------------------------------------------------  136 (327)
Q Consensus       119 ~~i~lwdl~~~~~~~~~~--------------------------------------------------------------  136 (327)
                      ++|++||++++++...+.                                                              
T Consensus       346 ~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  425 (611)
T 1nr0_A          346 GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDI  425 (611)
T ss_dssp             SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSC
T ss_pred             CcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcE
Confidence            999999998765432210                                                              


Q ss_pred             -----------------------CCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCC
Q psy11885        137 -----------------------QPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ  193 (327)
Q Consensus       137 -----------------------~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (327)
                                             ......++++++..+++|+.|++|++||+++....... ...+.....+++++|+++
T Consensus       426 ~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~-~~~h~~~v~~v~fspdg~  504 (611)
T 1nr0_A          426 AVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK-TIVHPAEITSVAFSNNGA  504 (611)
T ss_dssp             EEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE-EEECSSCEEEEEECTTSS
T ss_pred             EEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeee-ccCCCCceEEEEECCCCC
Confidence                                   00012345677889999999999999999764321111 112233467899999999


Q ss_pred             ceEEEeecCeEEEEEccCCccccccee-eeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCce-ee-
Q psy11885        194 GYVLSSIEGRAAVEYLDTGPEMQKMKY-AFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK-RL-  270 (327)
Q Consensus       194 ~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~-~~-  270 (327)
                      .+++++.++.+.+|........  ... ....|         ...|++++|+||+++||+||.|++|+|||+.++. .+ 
T Consensus       505 ~las~s~d~~v~~w~~~~~~~~--~~~~~~~~H---------~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~  573 (611)
T 1nr0_A          505 FLVATDQSRKVIPYSVANNFEL--AHTNSWTFH---------TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI  573 (611)
T ss_dssp             EEEEEETTSCEEEEEGGGTTEE--SCCCCCCCC---------SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred             EEEEEcCCCCEEEEEcCCCCce--eeeeeeeec---------ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccc
Confidence            9999999998888665431111  110 11113         2368999999999999999999999999998765 33 


Q ss_pred             eecCcC-CcceEEEEECCCCCEEEEEEcccccc
Q psy11885        271 CQFHRY-DTGITSLCFSYDGNVLAIACSYNYEL  302 (327)
Q Consensus       271 ~~~~~~-~~~v~~l~fspdg~~la~~~~~~~~~  302 (327)
                      ..+.+| ...|++++|+||++ ||+++.++...
T Consensus       574 ~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~  605 (611)
T 1nr0_A          574 IIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIK  605 (611)
T ss_dssp             EETTSSTTSCEEEEEEEETTE-EEEEETTSCEE
T ss_pred             hhhccCcccCeeEEEEcCCCE-EEEecCCCCEE
Confidence            456678 78899999999998 99887665443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-36  Score=273.23  Aligned_cols=279  Identities=19%  Similarity=0.288  Sum_probs=216.2

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCC------------------CceeeEEEe-CCceEEE
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHS------------------DPVLDCCFQ-DAVHSFS   73 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~------------------~~v~~~~~~-~~~~~~s   73 (327)
                      |.+.|++++|+|+ +++|++|+ |+++++|++.+++..... .|.                  ..|.+++|+ ++.++++
T Consensus        63 h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           63 HTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             CSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCEEEEEEECCC-CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            7789999999996 57888866 789999999988754333 221                  238899995 7889999


Q ss_pred             EecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEE--EEec-CCC
Q psy11885         74 GGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVF--TMSL-CGE  149 (327)
Q Consensus        74 gs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~--~~~~-~~~  149 (327)
                      |+.|++|++||+++++. ..+.+|...|.+++|+|+++.|++++.|++|++||++++++...+.....+.  .+++ ++.
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK  220 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCC
Confidence            99999999999988765 3567899999999999999999999999999999999999887776655544  4455 578


Q ss_pred             eEEEEeCCCeEEEEECCCCccceeeec-----ccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccc-------
Q psy11885        150 KFVVGTAGRKVCIWDLRNMGYIMQRRE-----SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK-------  217 (327)
Q Consensus       150 ~~~~~~~d~~v~iwD~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------  217 (327)
                      .+++++.|+.|++||+++...+.....     ........++++.|++..+++++.++.+.+|.+........       
T Consensus       221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~  300 (393)
T 1erj_A          221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG  300 (393)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCC
Confidence            899999999999999987654322211     11223457888999988889999899888866543221100       


Q ss_pred             -ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECC------CCC
Q psy11885        218 -MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY------DGN  290 (327)
Q Consensus       218 -~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp------dg~  290 (327)
                       ....+..|         ...|.+++|+|++++|++|+.|++|++||..+++.+..+.+|...|.+++|+|      +++
T Consensus       301 ~~~~~~~~h---------~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~  371 (393)
T 1erj_A          301 TCEVTYIGH---------KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN  371 (393)
T ss_dssp             CEEEEEECC---------SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCE
T ss_pred             cceEEEecc---------cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCC
Confidence             01111122         22588999999999999999999999999999999999999999999999986      789


Q ss_pred             EEEEEEccccccC
Q psy11885        291 VLAIACSYNYELE  303 (327)
Q Consensus       291 ~la~~~~~~~~~~  303 (327)
                      +||+|+.++....
T Consensus       372 ~l~sgs~Dg~i~i  384 (393)
T 1erj_A          372 VFATGSGDCKARI  384 (393)
T ss_dssp             EEEEEETTSEEEE
T ss_pred             EEEEECCCCcEEE
Confidence            9999986654433

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.8e-36  Score=263.41  Aligned_cols=272  Identities=16%  Similarity=0.182  Sum_probs=200.8

Q ss_pred             CCCCCCeeEEEE-----ecCCCcEEEEEECCCcEEEEECCCC-------e-EEEEecCCCceeeEEEe-CCceEEEEecC
Q psy11885         12 SPPEDGITAVKF-----APNSNQFLLASSWDCNVSLYDITNN-------N-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLD   77 (327)
Q Consensus        12 ~~~~~~I~~i~f-----s~~~~~~l~s~~~d~~i~iwd~~~~-------~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~D   77 (327)
                      ..|.+.|++++|     ++.++.+|++|+.|++|++||+..+       . .....+|...|.+++|+ ++..+++|+.|
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D   97 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD   97 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT
T ss_pred             ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC
Confidence            458889999999     6634679999999999999998753       2 23345799999999995 77889999999


Q ss_pred             CcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeee---eCCCcEEE--EecCC---
Q psy11885         78 CTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY---TQPDKVFT--MSLCG---  148 (327)
Q Consensus        78 g~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~---~~~~~~~~--~~~~~---  148 (327)
                      ++|++||++++.. ..+.+|...|.+++|+|+++.|++++.|++|++||+.........   .....+.+  +++.+   
T Consensus        98 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  177 (343)
T 2xzm_R           98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA  177 (343)
T ss_dssp             SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred             CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccc
Confidence            9999999988765 457789999999999999999999999999999999743222211   11223333  44433   


Q ss_pred             -------CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceee
Q psy11885        149 -------EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA  221 (327)
Q Consensus       149 -------~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  221 (327)
                             ..+++++.|+.|++||.+. +.....  ........+++++|+++.+++++.++.+.+|.......   ....
T Consensus       178 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~--~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~---~~~~  251 (343)
T 2xzm_R          178 NKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTF--KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY---PQRE  251 (343)
T ss_dssp             SCCCSSCCEEEEEETTSEEEEEETTT-EEEEEE--ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS---CSEE
T ss_pred             cccCCCCCEEEEEcCCCEEEEEcCCC-ceeEEE--cCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc---ccee
Confidence                   5799999999999999543 221111  11223457888999999899999999888765422111   1111


Q ss_pred             eeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeee--ecC-----------cCCcceEEEEECCC
Q psy11885        222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC--QFH-----------RYDTGITSLCFSYD  288 (327)
Q Consensus       222 ~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~--~~~-----------~~~~~v~~l~fspd  288 (327)
                      +. +         ..+|.+++|+|+++++++| .|+.|++||+.+++...  .+.           +|...|++++|+|+
T Consensus       252 ~~-~---------~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  320 (343)
T 2xzm_R          252 FD-A---------GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL  320 (343)
T ss_dssp             EE-C---------SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS
T ss_pred             ec-C---------CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC
Confidence            11 1         0148899999999887755 57889999988765433  332           56678999999999


Q ss_pred             CCEEEEEEcccc
Q psy11885        289 GNVLAIACSYNY  300 (327)
Q Consensus       289 g~~la~~~~~~~  300 (327)
                      |++||+|+.++.
T Consensus       321 g~~l~sg~~Dg~  332 (343)
T 2xzm_R          321 GKKLFAGFTDGV  332 (343)
T ss_dssp             SCCEEEEETTSE
T ss_pred             CCeEEEecCCce
Confidence            999999985543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=260.38  Aligned_cols=283  Identities=13%  Similarity=0.147  Sum_probs=195.1

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC--eEEEEe--c-CCCceeeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN--NLRLKY--A-HSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~--~-h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~   85 (327)
                      ..|.+.|++++|+|+   +|++|+.|++|++||+..+  +.....  . |..+|.+++|+ ++..+++|+.|++|++||+
T Consensus        11 ~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~   87 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK   87 (330)
T ss_dssp             ECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             ccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence            457889999999983   8999999999999999875  333322  3 89999999995 7888999999999999998


Q ss_pred             CCC-------c-eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC----ceeeeeeCC-CcE--EEEecCCCe
Q psy11885         86 NTQ-------T-ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS----RCVGNYTQP-DKV--FTMSLCGEK  150 (327)
Q Consensus        86 ~~~-------~-~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~----~~~~~~~~~-~~~--~~~~~~~~~  150 (327)
                      +..       . ...+.+|...|.+++|+|++++|++|+.|++|++||++..    +++..+..+ ..+  +.+++++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  167 (330)
T 2hes_X           88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL  167 (330)
T ss_dssp             -------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSE
T ss_pred             ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCE
Confidence            532       1 2346789999999999999999999999999999999532    345555443 234  456677889


Q ss_pred             EEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeC--CCceEEEeecCeEEEEEccCCcccccceeeeeeeeec
Q psy11885        151 FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPN--KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK  228 (327)
Q Consensus       151 ~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~  228 (327)
                      +++++.|++|++||+++...........+.....++.++|+  ...+++++.++.+.+|.............. ......
T Consensus       168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~~~~~~  246 (330)
T 2hes_X          168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV-CEAILP  246 (330)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE-EEEECC
T ss_pred             EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE-Eeeecc
Confidence            99999999999999875421111111122234567788887  345677778888888655422110000000 000000


Q ss_pred             cCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCce--eeee-cCcCCc-ceEEEEECC--CCCEEEEEEcccccc
Q psy11885        229 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK--RLCQ-FHRYDT-GITSLCFSY--DGNVLAIACSYNYEL  302 (327)
Q Consensus       229 ~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~--~~~~-~~~~~~-~v~~l~fsp--dg~~la~~~~~~~~~  302 (327)
                         ..|..+|.+++|+|++ +||+|+.||+|+|||..+++  .+.. ...|.. .|++++|+|  ++++||+|+.++...
T Consensus       247 ---~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~  322 (330)
T 2hes_X          247 ---DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVN  322 (330)
T ss_dssp             ---SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEE
T ss_pred             ---cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEE
Confidence               0122368999999765 89999999999999988763  2322 356766 899999999  799999998665433

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3e-35  Score=276.55  Aligned_cols=269  Identities=21%  Similarity=0.304  Sum_probs=218.2

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      ..|.+.|++++|+|+ +.+|++++.|++|++||....++.....|...+.+++|+ ++..+++|+.|+.|++||.+....
T Consensus       300 ~~h~~~v~~~~~~~~-~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~  378 (577)
T 2ymu_A          300 TGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL  378 (577)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEE
T ss_pred             ecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEE
Confidence            457789999999995 579999999999999999888877777899999999995 788999999999999999766555


Q ss_pred             eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885         91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus        91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~  167 (327)
                      ..+..|...|.+++|+|++++|++++.|+.|++||. +++.+..+..+ ..+  +.+++++..+++++.|++|++||+..
T Consensus       379 ~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~  457 (577)
T 2ymu_A          379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG  457 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred             EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence            667889999999999999999999999999999995 56666666543 233  45667788999999999999999753


Q ss_pred             CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885        168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY  247 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~  247 (327)
                       +.+....  .......+++++|+++.+++++.++.+.+|..+  .   .....+..|.         .+|++++|+|++
T Consensus       458 -~~~~~~~--~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~---~~~~~~~~h~---------~~v~~l~~s~dg  520 (577)
T 2ymu_A          458 -QLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--G---QLLQTLTGHS---------SSVRGVAFSPDG  520 (577)
T ss_dssp             -CEEEEEE--CCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--S---CEEEEEECCS---------SCEEEEEECTTS
T ss_pred             -CEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--C---CEEEEEeCCC---------CCEEEEEEcCCC
Confidence             3222111  222345788899998888888888887775532  1   1222333332         258999999999


Q ss_pred             CeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       248 ~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      ++||+++.||+|+|||. +++.+..+.+|..+|++|+|+|||++|++++.+..
T Consensus       521 ~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          521 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT  572 (577)
T ss_dssp             SCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             CEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence            99999999999999995 67888889999999999999999999999986654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=260.21  Aligned_cols=274  Identities=21%  Similarity=0.285  Sum_probs=208.6

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEEC---CCcEEEEECCCCeEE--EEecCCCceeeEEEeC----CceEEEEecCCcEEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSW---DCNVSLYDITNNNLR--LKYAHSDPVLDCCFQD----AVHSFSGGLDCTLKM   82 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~---d~~i~iwd~~~~~~~--~~~~h~~~v~~~~~~~----~~~~~sgs~Dg~i~v   82 (327)
                      ..|.+.|++++|+|++..++++++.   |+.|++||+.+++..  ....|..+|.+++|++    +..+++|+.|+.|++
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i   94 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI   94 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence            4478899999999976667777776   999999999988753  3447899999999963    589999999999999


Q ss_pred             EEcCCCc--eeeeecCCccEEEEEE------eCCCCEEEEEECCCeEEEEeCCCCc-eeeeeeCC-----CcEEEEe---
Q psy11885         83 FDFNTQT--ETVIGTHDQPIRAVEY------SDEVNCILTGSWDTSVKMWDPRSSR-CVGNYTQP-----DKVFTMS---  145 (327)
Q Consensus        83 wd~~~~~--~~~~~~h~~~V~~l~~------~~~~~~l~sgs~d~~i~lwdl~~~~-~~~~~~~~-----~~~~~~~---  145 (327)
                      ||++++.  ...+..|...|.+++|      +++++.|++++.|++|++||+++++ .+..+..+     ..+.++.   
T Consensus        95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  174 (357)
T 3i2n_A           95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN  174 (357)
T ss_dssp             ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC
T ss_pred             EeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe
Confidence            9998775  3457789999999955      6789999999999999999999876 55555431     1344443   


Q ss_pred             ---cCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEee---CCCceEEEeecCeEEEEEccCCcccccce
Q psy11885        146 ---LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFP---NKQGYVLSSIEGRAAVEYLDTGPEMQKMK  219 (327)
Q Consensus       146 ---~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  219 (327)
                         +++..+++++.|+.|++||+++.+....   ........++.+.|   ++..+++++.++.+.+|............
T Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  251 (357)
T 3i2n_A          175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWE---TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFA  251 (357)
T ss_dssp             CCC-CCCEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEE
T ss_pred             ccCCCCCEEEEEccCCeEEEEECccCceeee---cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccccee
Confidence               5688899999999999999998764222   12233457888888   77888888888888775544322211111


Q ss_pred             e-eeeeeeeccCCeeeEEEeeEEEEecCCC-eEEEecCCCeEEEEeCCCc-------------------eeeeecCcCCc
Q psy11885        220 Y-AFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGGSDGYVNIWDGFNK-------------------KRLCQFHRYDT  278 (327)
Q Consensus       220 ~-~~~~h~~~~~~~~~~~~v~~v~~spd~~-~lasgs~dg~i~iWd~~~~-------------------~~~~~~~~~~~  278 (327)
                      . .+..|         ..+|.+++|+|+++ +|++|+.||.|++||+.++                   +.+..+..|..
T Consensus       252 ~~~~~~~---------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  322 (357)
T 3i2n_A          252 SVSEKAH---------KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ  322 (357)
T ss_dssp             EEEEECC---------SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS
T ss_pred             eeccCCC---------cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC
Confidence            0 01122         23689999999998 8999999999999998753                   34566778888


Q ss_pred             ceEEEEECCCCCEEE-EEEc
Q psy11885        279 GITSLCFSYDGNVLA-IACS  297 (327)
Q Consensus       279 ~v~~l~fspdg~~la-~~~~  297 (327)
                      +|++++|+|+|++|| +++.
T Consensus       323 ~v~~~~~s~~~~~l~~s~~~  342 (357)
T 3i2n_A          323 PISSLDWSPDKRGLCVCSSF  342 (357)
T ss_dssp             CEEEEEECSSSTTEEEEEET
T ss_pred             CeeEEEEcCCCCeEEEEecC
Confidence            999999999999999 5663

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.2e-34  Score=258.15  Aligned_cols=279  Identities=11%  Similarity=0.081  Sum_probs=198.5

Q ss_pred             CCeeEEEEecCCCcEEEEEECCC-------cEEEEECCCCe------EE-----EEecCCCceeeEEEeCCceEE-----
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDC-------NVSLYDITNNN------LR-----LKYAHSDPVLDCCFQDAVHSF-----   72 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~-------~i~iwd~~~~~------~~-----~~~~h~~~v~~~~~~~~~~~~-----   72 (327)
                      -+|.+++|+|+ +++|++||.|.       .|++|++..+.      +.     .+..|.+.|.++++.. ..++     
T Consensus        15 ~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~-~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK-GIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET-TEEEEECCC
T ss_pred             CCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC-CEEEEEECC
Confidence            47999999995 68999987543       59999986542      11     1224677788877643 3343     


Q ss_pred             ------EEecCCcEEEEEcCCCcee--e--------eecCCccEEEEEEeCCCCEEEEE--ECCCeEEEEeCCCCceeee
Q psy11885         73 ------SGGLDCTLKMFDFNTQTET--V--------IGTHDQPIRAVEYSDEVNCILTG--SWDTSVKMWDPRSSRCVGN  134 (327)
Q Consensus        73 ------sgs~Dg~i~vwd~~~~~~~--~--------~~~h~~~V~~l~~~~~~~~l~sg--s~d~~i~lwdl~~~~~~~~  134 (327)
                            +|+.|+++|+|++++....  .        ...++..+++++|+|||++++++  +.|++|++||+++++++..
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~  172 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE  172 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence                  4567889999998765321  1        12345679999999999987755  4789999999999998888


Q ss_pred             eeCCCcE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCe--EEEEEcc
Q psy11885        135 YTQPDKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGR--AAVEYLD  210 (327)
Q Consensus       135 ~~~~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~  210 (327)
                      +.....+  +++++++..+++++.+ .+++|+..+.+...............+++++|++..+++++.++.  ..++.|+
T Consensus       173 ~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~  251 (365)
T 4h5i_A          173 IETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS  251 (365)
T ss_dssp             EECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred             eCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence            7765544  5567778888888754 566666665554333222233445678899999988888887764  3444454


Q ss_pred             CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeec-CcCCcceEEEEECCCC
Q psy11885        211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF-HRYDTGITSLCFSYDG  289 (327)
Q Consensus       211 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~-~~~~~~v~~l~fspdg  289 (327)
                      .........   ..+...    .+..+|++++|+|||++||+|+.|++|+|||+.+++.+..+ .+|..+|++|+|||||
T Consensus       252 ~~~~~~~~~---~~~~~~----~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg  324 (365)
T 4h5i_A          252 IKSGNTSVL---RSKQVT----NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS  324 (365)
T ss_dssp             EETTEEEEE---EEEEEE----SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred             cccceecce---eeeeec----CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence            322111111   111111    11236899999999999999999999999999999988875 6899999999999999


Q ss_pred             CEEEEEEccccccCC
Q psy11885        290 NVLAIACSYNYELET  304 (327)
Q Consensus       290 ~~la~~~~~~~~~~~  304 (327)
                      ++||+|+.+.....+
T Consensus       325 ~~laS~S~D~tvrvw  339 (365)
T 4h5i_A          325 TYVASVSAANTIHII  339 (365)
T ss_dssp             CEEEEEETTSEEEEE
T ss_pred             CEEEEEeCCCeEEEE
Confidence            999999877665554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.2e-34  Score=268.09  Aligned_cols=292  Identities=18%  Similarity=0.247  Sum_probs=227.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      ..|...|++++|+|+ +++|++++.|+.|++||...........|...|.+++|+ ++..+++++.|++|++||++....
T Consensus       259 ~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~  337 (577)
T 2ymu_A          259 TGHSSSVNGVAFRPD-GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL  337 (577)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE
T ss_pred             ecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee
Confidence            457789999999995 578999999999999998766666667899999999995 788999999999999999987776


Q ss_pred             eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-c--EEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885         91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-K--VFTMSLCGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus        91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~d~~v~iwD~~~  167 (327)
                      ..+..|...|.+++|+|+++.|++++.|+.|++||. +++.+..+..+. .  .+.++++++.+++++.|+.|++||...
T Consensus       338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~  416 (577)
T 2ymu_A          338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG  416 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            777889999999999999999999999999999995 566666665432 3  355677888999999999999999643


Q ss_pred             CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885        168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY  247 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~  247 (327)
                       +.+....  .......+++++|++..+++++.++.+.+|...  .   .....+..|.         .+|.+++|+|++
T Consensus       417 -~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~---~~~~~~~~~~---------~~v~~~~~spd~  479 (577)
T 2ymu_A          417 -QLLQTLT--GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--G---QLLQTLTGHS---------SSVRGVAFSPDG  479 (577)
T ss_dssp             -CEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--S---CEEEEEECCS---------SCEEEEEECTTS
T ss_pred             -CEEEEec--CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--C---CEEEEEcCCC---------CCEEEEEEcCCC
Confidence             3221111  122345678899998888888888887775432  1   1122223332         258899999999


Q ss_pred             CeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCC-------CCCCCCcEEEEEcc
Q psy11885        248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPP-------DPIPPNNIFIRHVT  320 (327)
Q Consensus       248 ~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  320 (327)
                      ++||+++.|++|++||. +++.+..+.+|...|++|+|||||++||+++.+.....+..       ...|...|.-+...
T Consensus       480 ~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs  558 (577)
T 2ymu_A          480 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS  558 (577)
T ss_dssp             CEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEEC
T ss_pred             CEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEc
Confidence            99999999999999995 67888889999999999999999999999987665443321       11244555555555


Q ss_pred             ccc
Q psy11885        321 DQE  323 (327)
Q Consensus       321 ~~~  323 (327)
                      +++
T Consensus       559 ~dg  561 (577)
T 2ymu_A          559 PDG  561 (577)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.2e-35  Score=252.58  Aligned_cols=238  Identities=16%  Similarity=0.196  Sum_probs=179.8

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC--e-EEEEecCCCceeeEEEe-C--CceEEEEecCCcEEEEEc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN--N-LRLKYAHSDPVLDCCFQ-D--AVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~--~-~~~~~~h~~~v~~~~~~-~--~~~~~sgs~Dg~i~vwd~   85 (327)
                      ..|.+.|++++|+|+ +++||+|+.|++|+|||+.++  + +..+.+|.++|.+++|+ +  +..++||+.|++|++||+
T Consensus         6 ~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             CSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             cCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            457889999999995 579999999999999999753  3 34556799999999995 3  789999999999999999


Q ss_pred             CCCce---eeeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCCce--eeeeeC-CCcEEEE--ecC--------
Q psy11885         86 NTQTE---TVIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSSRC--VGNYTQ-PDKVFTM--SLC--------  147 (327)
Q Consensus        86 ~~~~~---~~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~~~--~~~~~~-~~~~~~~--~~~--------  147 (327)
                      +++..   ..+..|...|.+++|+|+  +..|++|+.|++|++||++++..  ...+.. ...+.++  ++.        
T Consensus        85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~  164 (297)
T 2pm7_B           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH  164 (297)
T ss_dssp             SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-------
T ss_pred             CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccC
Confidence            87642   345679999999999997  88999999999999999987632  222332 2234443  333        


Q ss_pred             -----CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeee
Q psy11885        148 -----GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF  222 (327)
Q Consensus       148 -----~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  222 (327)
                           +..|++++.|++|++||+++.+..         .  ..                                 ...+
T Consensus       165 ~~~~~~~~l~sgs~D~~v~lwd~~~~~~~---------~--~~---------------------------------~~~l  200 (297)
T 2pm7_B          165 NGTKESRKFVTGGADNLVKIWKYNSDAQT---------Y--VL---------------------------------ESTL  200 (297)
T ss_dssp             -----CCEEEEEETTSCEEEEEEETTTTE---------E--EE---------------------------------EEEE
T ss_pred             CCCCCcceEEEEcCCCcEEEEEEcCCCce---------E--EE---------------------------------EEEe
Confidence                 357999999999999998653210         0  00                                 0001


Q ss_pred             eeeeeccCCeeeEEEeeEEEEecCC---CeEEEecCCCeEEEEeCCCce---eeeec--CcCCcceEEEEECCCCCEEEE
Q psy11885        223 KCHRIKEDGIEKIYPVNAISFHQEY---NTFATGGSDGYVNIWDGFNKK---RLCQF--HRYDTGITSLCFSYDGNVLAI  294 (327)
Q Consensus       223 ~~h~~~~~~~~~~~~v~~v~~spd~---~~lasgs~dg~i~iWd~~~~~---~~~~~--~~~~~~v~~l~fspdg~~la~  294 (327)
                      ..|.         .+|.+++|+|++   ++||+||.|++|+|||+.+..   ....+  ..|...|++++|||+|++||+
T Consensus       201 ~~H~---------~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las  271 (297)
T 2pm7_B          201 EGHS---------DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL  271 (297)
T ss_dssp             CCCS---------SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred             cCCC---------CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEE
Confidence            1121         258899999995   899999999999999987642   11222  467778999999999999999


Q ss_pred             EEccccccC
Q psy11885        295 ACSYNYELE  303 (327)
Q Consensus       295 ~~~~~~~~~  303 (327)
                      ++.++....
T Consensus       272 ~~~D~~v~l  280 (297)
T 2pm7_B          272 SGGDNKVTL  280 (297)
T ss_dssp             EETTSCEEE
T ss_pred             EcCCCcEEE
Confidence            987654433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.1e-35  Score=260.64  Aligned_cols=282  Identities=15%  Similarity=0.191  Sum_probs=214.6

Q ss_pred             cCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-------EEEEecCCCceeeEEEe-C----C---ceEEEE
Q psy11885         10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-------LRLKYAHSDPVLDCCFQ-D----A---VHSFSG   74 (327)
Q Consensus        10 ~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~h~~~v~~~~~~-~----~---~~~~sg   74 (327)
                      ....|.+.|++++|+|   .+|++++.|++|++||+.+++       ......|..+|.+++|+ +    +   ..++++
T Consensus        11 ~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             ESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence            3456889999999998   589999999999999999876       56666899999999995 5    6   899999


Q ss_pred             ecCCcEEEEEcCCCc------eeeeecC-----CccEEEEEEe----CCCCE-EEEEECCCeEEEEeCCC------Ccee
Q psy11885         75 GLDCTLKMFDFNTQT------ETVIGTH-----DQPIRAVEYS----DEVNC-ILTGSWDTSVKMWDPRS------SRCV  132 (327)
Q Consensus        75 s~Dg~i~vwd~~~~~------~~~~~~h-----~~~V~~l~~~----~~~~~-l~sgs~d~~i~lwdl~~------~~~~  132 (327)
                      +.|+.|++||++++.      ...+..|     ...|.+++|+    |+++. |++++.|+.|++||+++      ++.+
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  167 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  167 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence            999999999998776      4456677     5899999999    99999 99999999999999988      6665


Q ss_pred             e-----eee----------CCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeec-ccc---eeeeEEeEEeeCCC
Q psy11885        133 G-----NYT----------QPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRE-SSL---KFQTRCIKCFPNKQ  193 (327)
Q Consensus       133 ~-----~~~----------~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~  193 (327)
                      .     .+.          .....+.+++++ .+++++.|+.|++||+++.+.+..... ...   .....+++++|++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~  246 (397)
T 1sq9_A          168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  246 (397)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence            5     552          122345667778 999999999999999998764433222 002   33467888999988


Q ss_pred             ceEEEeec---CeEEEEEccCCcccccceeeeeeeee----ccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885        194 GYVLSSIE---GRAAVEYLDTGPEMQKMKYAFKCHRI----KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       194 ~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~h~~----~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~  266 (327)
                      .+++++.+   +.+.+|.......    ...+.....    ......+..+|.+++|+|++++|++|+.||.|++||+.+
T Consensus       247 ~l~~~~~d~~~g~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          247 LLAIAHDSNSFGCITLYETEFGER----IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCE----EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEEecCCCCceEEEEECCCCcc----cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            88888887   6666655443321    112221000    000000223689999999999999999999999999999


Q ss_pred             ceeeeecC------cC---------------CcceEEEEECCCC----------CEEEEEEccc
Q psy11885        267 KKRLCQFH------RY---------------DTGITSLCFSYDG----------NVLAIACSYN  299 (327)
Q Consensus       267 ~~~~~~~~------~~---------------~~~v~~l~fspdg----------~~la~~~~~~  299 (327)
                      ++.+..+.      .|               ..+|++++|+|+|          ++|++++.++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg  386 (397)
T 1sq9_A          323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR  386 (397)
T ss_dssp             TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred             CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence            99888887      77               8899999999999          7999998543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-34  Score=252.04  Aligned_cols=271  Identities=15%  Similarity=0.170  Sum_probs=215.4

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|++++|+|+ +.+|++++.|+.|++||+.+++... ...|...|.+++|+ ++..+++++.|+.|++||+.++.
T Consensus        29 ~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  107 (369)
T 3zwl_B           29 TGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ  107 (369)
T ss_dssp             ECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             EEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            447789999999995 5799999999999999999888544 44699999999995 78899999999999999999887


Q ss_pred             eeeeecCCccEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCceeee-----------eeC-----CCcEEEEecCC
Q psy11885         90 ETVIGTHDQPIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCVGN-----------YTQ-----PDKVFTMSLCG  148 (327)
Q Consensus        90 ~~~~~~h~~~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~~~-----------~~~-----~~~~~~~~~~~  148 (327)
                      ......|..+|.+++|+|+++.+++++.+     +.|++||++..+....           +..     ......+++++
T Consensus       108 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (369)
T 3zwl_B          108 CVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG  187 (369)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG
T ss_pred             EEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC
Confidence            65544588899999999999999999999     9999999976543221           111     12234566778


Q ss_pred             CeEEEEeCCCeEEEEECCCC-ccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee
Q psy11885        149 EKFVVGTAGRKVCIWDLRNM-GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI  227 (327)
Q Consensus       149 ~~~~~~~~d~~v~iwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~  227 (327)
                      +.+++++.|+.|++||+++. ..+.....  ......++.++|++..+++++.++.+.+|........    ..+. +  
T Consensus       188 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----~~~~-~--  258 (369)
T 3zwl_B          188 KYIIAGHKDGKISKYDVSNNYEYVDSIDL--HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL----KKYE-T--  258 (369)
T ss_dssp             CEEEEEETTSEEEEEETTTTTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE----EEEE-C--
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEEEec--CCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee----eeec-C--
Confidence            89999999999999999873 32222211  2234577888998888888888888777655443221    1111 1  


Q ss_pred             ccCCeeeEEEeeEEEEecCCCeEEEecCCC--------------eEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEE
Q psy11885        228 KEDGIEKIYPVNAISFHQEYNTFATGGSDG--------------YVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA  293 (327)
Q Consensus       228 ~~~~~~~~~~v~~v~~spd~~~lasgs~dg--------------~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la  293 (327)
                             ..++.+++|+|+++++++++.++              .+++||..+++.+..+.+|...|++++|+|+|++||
T Consensus       259 -------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  331 (369)
T 3zwl_B          259 -------DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA  331 (369)
T ss_dssp             -------SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             -------CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEE
Confidence                   12578999999999999999988              899999999999999999999999999999999999


Q ss_pred             EEEccc
Q psy11885        294 IACSYN  299 (327)
Q Consensus       294 ~~~~~~  299 (327)
                      +++.++
T Consensus       332 s~~~dg  337 (369)
T 3zwl_B          332 SGGEDG  337 (369)
T ss_dssp             EEETTS
T ss_pred             EEcCCC
Confidence            998543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.9e-34  Score=247.98  Aligned_cols=268  Identities=17%  Similarity=0.244  Sum_probs=212.8

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE----EEEe--cCCCceeeEEEe-CCceEEEEecCCcEEEEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL----RLKY--AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFD   84 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~--~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd   84 (327)
                      ..|.+.|++++|+|+ +++|++++ |+.|++||+.+++.    ....  .|...|.+++|+ ++..+++++.|+.|++||
T Consensus        48 ~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  125 (337)
T 1gxr_A           48 LNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             ECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             ccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence            357889999999995 57888888 99999999987542    1122  688899999995 778899999999999999


Q ss_pred             cCCCce---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCCeEEEEeCCC
Q psy11885         85 FNTQTE---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGEKFVVGTAGR  158 (327)
Q Consensus        85 ~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~  158 (327)
                      ++++..   ..+..|...|.+++|+|+++.+++++.|+.|++||+++++.+..+..+ ..+  +.++++++.+++++.|+
T Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  205 (337)
T 1gxr_A          126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN  205 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence            988753   345678899999999999999999999999999999999888777643 334  45566788999999999


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      .|++||+++.+.....   .......++.++|+++.+++++.++.+.++.......     ..+..|.         .++
T Consensus       206 ~i~~~d~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~---------~~v  268 (337)
T 1gxr_A          206 TVRSWDLREGRQLQQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHE---------SCV  268 (337)
T ss_dssp             EEEEEETTTTEEEEEE---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EEECCCS---------SCE
T ss_pred             cEEEEECCCCceEeee---cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----EEEcCCc---------cce
Confidence            9999999987643322   1223457788889988888888888887765543321     1122221         258


Q ss_pred             eEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        239 NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      .+++|+|++++|++++.||.|++||+.+++.+... .+...|.+++|+|++++|++++.++
T Consensus       269 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg  328 (337)
T 1gxr_A          269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             eEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCC
Confidence            89999999999999999999999999988877443 4677899999999999999998543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.6e-34  Score=275.54  Aligned_cols=275  Identities=19%  Similarity=0.228  Sum_probs=208.7

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC-----e-EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEE
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-----N-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~-----~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vw   83 (327)
                      -..|.+.|++|+|+|++..+|++||.|++|++||+..+     . .....+|...|.+++|+ ++..++||+.|++|++|
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw  457 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW  457 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            34688999999999976689999999999999999753     2 23456799999999995 78899999999999999


Q ss_pred             EcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee----CCCcEEE--EecCC--CeEEEE
Q psy11885         84 DFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT----QPDKVFT--MSLCG--EKFVVG  154 (327)
Q Consensus        84 d~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~----~~~~~~~--~~~~~--~~~~~~  154 (327)
                      |+.++.. ..+.+|...|.+++|+|+++.|++|+.|++|++||+..........    +...+.+  +++++  ..++++
T Consensus       458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  537 (694)
T 3dm0_A          458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA  537 (694)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred             ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE
Confidence            9988765 4567899999999999999999999999999999986543222211    1223444  44443  469999


Q ss_pred             eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeee
Q psy11885        155 TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEK  234 (327)
Q Consensus       155 ~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~  234 (327)
                      +.|++|++||+++.+......  .+.....+++++|++..+++++.++.+.+|....+...    ..+..          
T Consensus       538 s~d~~v~vwd~~~~~~~~~~~--~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~----------  601 (694)
T 3dm0_A          538 SWDKTVKVWNLSNCKLRSTLA--GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL----YSLEA----------  601 (694)
T ss_dssp             ETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE----ECCBC----------
T ss_pred             eCCCeEEEEECCCCcEEEEEc--CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE----EEecC----------
Confidence            999999999998765432222  22234578889999988899999999888665543321    11111          


Q ss_pred             EEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCC-------------------cceEEEEECCCCCEEEEE
Q psy11885        235 IYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD-------------------TGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       235 ~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~-------------------~~v~~l~fspdg~~la~~  295 (327)
                      ...+.+++|+|++.+|++++ |+.|+|||+.+++.+..+..+.                   ..|++++|||||++|++|
T Consensus       602 ~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg  680 (694)
T 3dm0_A          602 NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG  680 (694)
T ss_dssp             SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE
Confidence            12478999999998887775 5669999999988776553211                   137899999999999999


Q ss_pred             Ecccccc
Q psy11885        296 CSYNYEL  302 (327)
Q Consensus       296 ~~~~~~~  302 (327)
                      +.++...
T Consensus       681 s~Dg~i~  687 (694)
T 3dm0_A          681 YTDGVIR  687 (694)
T ss_dssp             ETTSEEE
T ss_pred             cCCCeEE
Confidence            8665443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2e-34  Score=254.96  Aligned_cols=280  Identities=16%  Similarity=0.255  Sum_probs=207.8

Q ss_pred             cCCCCCCCeeEEEEecC---CCcEEEEEECCCcEEEEECCCCeE-EEEe-----cCCCceeeEEEe-C----CceEEEEe
Q psy11885         10 LNSPPEDGITAVKFAPN---SNQFLLASSWDCNVSLYDITNNNL-RLKY-----AHSDPVLDCCFQ-D----AVHSFSGG   75 (327)
Q Consensus        10 ~~~~~~~~I~~i~fs~~---~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-----~h~~~v~~~~~~-~----~~~~~sgs   75 (327)
                      ....|.+.|++++|+|+   +...+++++.++.|++||+.+++. ....     .|...|.+++|+ +    +..+++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34568899999999984   445677777788999999987653 2222     266789999995 4    46899999


Q ss_pred             cCCcEEEEEcCCCcee-eeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeee---e-CCCcEE--EEecC
Q psy11885         76 LDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNY---T-QPDKVF--TMSLC  147 (327)
Q Consensus        76 ~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~---~-~~~~~~--~~~~~  147 (327)
                      .|+.|++||++++... .+..|..+|.+++|+| +++.|++|+.|+.|++||+++++.+..+   . ....+.  .++++
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            9999999999887653 5667999999999999 8999999999999999999999888776   2 233444  45567


Q ss_pred             CCeEEEEeCCCeEEEEECCCCccceeeec--------------------------ccceeeeEEeEEeeCCCceEEEeec
Q psy11885        148 GEKFVVGTAGRKVCIWDLRNMGYIMQRRE--------------------------SSLKFQTRCIKCFPNKQGYVLSSIE  201 (327)
Q Consensus       148 ~~~~~~~~~d~~v~iwD~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  201 (327)
                      +..+++++.|+.|++||+++.+.......                          ........++.+.  ++.+++++.+
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  250 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE  250 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence            88999999999999999987643211100                          0012234556665  5677788888


Q ss_pred             CeEEEEEccCCccccc----------ceeeeeeeeeccCCeeeEEEeeEEEEecC--CCeEEEecCCCeEEEEeCCCcee
Q psy11885        202 GRAAVEYLDTGPEMQK----------MKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFATGGSDGYVNIWDGFNKKR  269 (327)
Q Consensus       202 ~~~~i~~~~~~~~~~~----------~~~~~~~h~~~~~~~~~~~~v~~v~~spd--~~~lasgs~dg~i~iWd~~~~~~  269 (327)
                      +.+.+|..........          ....+..|         ..+|.+++|+|+  +++|++|+.||.|++||+.+++.
T Consensus       251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS---------QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP  321 (366)
T ss_dssp             SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS---------SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred             CEEEEEeCCCccccccccccCCcchheecccccc---------CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence            8888766543322100          01111111         125889999999  99999999999999999988754


Q ss_pred             e----eecCcC--CcceEEEEECCCCCEEEEEEcccc
Q psy11885        270 L----CQFHRY--DTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       270 ~----~~~~~~--~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      .    ..+..|  ..+|++++|+|+|++||+++.++.
T Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  358 (366)
T 3k26_A          322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS  358 (366)
T ss_dssp             GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE
Confidence            3    356555  678999999999999999986543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.5e-33  Score=247.15  Aligned_cols=272  Identities=21%  Similarity=0.282  Sum_probs=205.3

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe------EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN------LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFD   84 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd   84 (327)
                      ..|.+.|++|+|+|+++++|++||.|++|+|||+..++      .....+|...|.+++|+ ++.++++|+.|+.|++|+
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~  114 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD  114 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence            45889999999999767899999999999999987643      23345799999999995 788999999999999999


Q ss_pred             cCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee-eeC-CCcE--EEEecC--CCeEEEEeCC
Q psy11885         85 FNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN-YTQ-PDKV--FTMSLC--GEKFVVGTAG  157 (327)
Q Consensus        85 ~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~-~~~-~~~~--~~~~~~--~~~~~~~~~d  157 (327)
                      ....... ....+...+..+.++++++.|++|+.|+.+++||+........ ... ...+  ..+.+.  ...+++++.|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d  194 (340)
T 4aow_A          115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD  194 (340)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred             ecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence            9877654 3456777888999999999999999999999999876543322 222 2233  334443  3457889999


Q ss_pred             CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885        158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP  237 (327)
Q Consensus       158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  237 (327)
                      +.|++||+++.+.......  ......+++++|+++.+++++.++.+.+|.......    ...+..+          ..
T Consensus       195 ~~i~i~d~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~~----------~~  258 (340)
T 4aow_A          195 KLVKVWNLANCKLKTNHIG--HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH----LYTLDGG----------DI  258 (340)
T ss_dssp             SCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE----EEEEECS----------SC
T ss_pred             CEEEEEECCCCceeeEecC--CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce----eeeecCC----------ce
Confidence            9999999998764332221  223457888999988889999888888765543321    1111111          14


Q ss_pred             eeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeec---------CcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF---------HRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~---------~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      +.+++|+|++. +++++.|+.|++||+.++..+..+         ..|...|++|+|||||++||+|+.++.
T Consensus       259 v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~  329 (340)
T 4aow_A          259 INALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL  329 (340)
T ss_dssp             EEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence            78999999875 556667999999999887665543         356778999999999999999986543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.5e-35  Score=266.17  Aligned_cols=279  Identities=16%  Similarity=0.212  Sum_probs=198.2

Q ss_pred             cCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE---EEEecCCCceeeEEEe--CCceEEEEecCCcEEEEE
Q psy11885         10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL---RLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFD   84 (327)
Q Consensus        10 ~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd   84 (327)
                      ...+|+..|++|+|+|.++.+||+|+.||+|+|||+.+++.   ....+|.++|.+++|+  ++.+++|||.|++|++||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            34567789999999997677999999999999999987652   2334799999999996  578999999999999999


Q ss_pred             cCCCceeeeec---CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-CCcEEEE--ecCCC-eEEEEeCC
Q psy11885         85 FNTQTETVIGT---HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKVFTM--SLCGE-KFVVGTAG  157 (327)
Q Consensus        85 ~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-~~~~~~~--~~~~~-~~~~~~~d  157 (327)
                      ++++....+..   +...+.+++|++++++|++|+.|+.|++||++. +.+..+.. ...+.++  ++.+. .+++++.|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d  272 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVD  272 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence            98776544332   344678999999999999999999999999875 44455543 3345444  44554 67889999


Q ss_pred             CeEEEEECCCCccceee-ecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        158 RKVCIWDLRNMGYIMQR-RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       158 ~~v~iwD~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      +.|++||+++.+..... ....+.....+++++|++..+++++.++.+.+|.........    .+..|......  +. 
T Consensus       273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~----~~~~~~~~~~~--~~-  345 (435)
T 4e54_B          273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL----GLIPHPHRHFQ--HL-  345 (435)
T ss_dssp             SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE----EECCCCCCCCS--SS-
T ss_pred             ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce----EEecccccccc--cc-
Confidence            99999999876532111 111223345778889999999999999998886655433211    11111111000  00 


Q ss_pred             EeeEEEEecCCCeEEEe-----------c-CCCeEEEEeCCCceeeeecC-cCCcceEEE-EECCCCCEEEEEE
Q psy11885        237 PVNAISFHQEYNTFATG-----------G-SDGYVNIWDGFNKKRLCQFH-RYDTGITSL-CFSYDGNVLAIAC  296 (327)
Q Consensus       237 ~v~~v~~spd~~~lasg-----------s-~dg~i~iWd~~~~~~~~~~~-~~~~~v~~l-~fspdg~~la~~~  296 (327)
                      .+....|+|++..++++           + .+++|++||..+++.+..+. .|...|.++ +|||||++||+|+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~  419 (435)
T 4e54_B          346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM  419 (435)
T ss_dssp             CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred             eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence            01123444444444443           2 44689999999998887764 566678887 7999999999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.8e-34  Score=253.20  Aligned_cols=279  Identities=15%  Similarity=0.136  Sum_probs=208.2

Q ss_pred             ecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe---cCCCceeeEEEeC--CceEEEEecCCcEEEE
Q psy11885          9 SLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY---AHSDPVLDCCFQD--AVHSFSGGLDCTLKMF   83 (327)
Q Consensus         9 ~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~h~~~v~~~~~~~--~~~~~sgs~Dg~i~vw   83 (327)
                      .....|.+.|++++|+|++..+|++|+.|+.|++||+.+++.....   +|...|.+++|++  +..+++++.|+.|++|
T Consensus        67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR  146 (383)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred             EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence            3346688999999999965489999999999999999987744333   5999999999964  5789999999999999


Q ss_pred             EcCCCceeeee---cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEE--EEecCCC-eEEEEeC
Q psy11885         84 DFNTQTETVIG---THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVF--TMSLCGE-KFVVGTA  156 (327)
Q Consensus        84 d~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~--~~~~~~~-~~~~~~~  156 (327)
                      |+++.....+.   .|...|.+++|+|+++.|++|+.|+.|++||+ +++++..+..+ ..+.  .+++.+. .+++++.
T Consensus       147 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  225 (383)
T 3ei3_B          147 DFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSV  225 (383)
T ss_dssp             ETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEET
T ss_pred             ECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeC
Confidence            99875544443   34588999999999999999999999999999 46666666543 3344  4555666 8999999


Q ss_pred             CCeEEEEECCCCcc---ceeeecccceeeeEEeEEee-CCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccC--
Q psy11885        157 GRKVCIWDLRNMGY---IMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED--  230 (327)
Q Consensus       157 d~~v~iwD~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~--  230 (327)
                      |+.|++||+++.+.   .....  .......+++++| ++..+++++.++.+.+|.........    .+..|.....  
T Consensus       226 d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~  299 (383)
T 3ei3_B          226 DATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD----QIIIHPHRQFQH  299 (383)
T ss_dssp             TSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS----EEEECCBCCCTT
T ss_pred             CCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc----cccccccccccc
Confidence            99999999987321   11111  2233467888999 88888888888888886655433221    1122211100  


Q ss_pred             --Cee-e---EEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc--CCcceEEEEECCCCCEEEEEE
Q psy11885        231 --GIE-K---IYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR--YDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       231 --~~~-~---~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~--~~~~v~~l~fspdg~~la~~~  296 (327)
                        ... .   ...+..++|+|++++  +|+.|++|++||+.+++.+..+.+  +...+..++|+|||++||+|+
T Consensus       300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s  371 (383)
T 3ei3_B          300 LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM  371 (383)
T ss_dssp             SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred             ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence              000 0   012445788888877  899999999999999999888876  345677789999999999995

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.9e-34  Score=250.68  Aligned_cols=237  Identities=17%  Similarity=0.296  Sum_probs=190.9

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-----EEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCC
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-----LRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      .|...|.+++|+|+ +.+|++++.|+.|++||+.+++     .....+|...|.++.|++...+++++.|++|++||+++
T Consensus        95 ~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~  173 (340)
T 1got_B           95 LRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET  173 (340)
T ss_dssp             CSSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             cCCccEEEEEECCC-CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCC
Confidence            46678999999995 5799999999999999998652     23345799999999998777899999999999999988


Q ss_pred             Ccee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEEEE
Q psy11885         88 QTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        88 ~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~iw  163 (327)
                      +... .+.+|...|.+++|+|+++++++|+.|++|++||++++++...+..+. .+  +++++++..+++++.|++|++|
T Consensus       174 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw  253 (340)
T 1got_B          174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF  253 (340)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            7653 567899999999999999999999999999999999999888876543 33  4566778899999999999999


Q ss_pred             ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      |+++.+.+.............+++++|++..+++++.++.+.+|.......    ...+..|.         .+|.+++|
T Consensus       254 d~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~----~~~~~~h~---------~~v~~~~~  320 (340)
T 1got_B          254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR----AGVLAGHD---------NRVSCLGV  320 (340)
T ss_dssp             ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEECCS---------SCEEEEEE
T ss_pred             ECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE----eeEeecCC---------CcEEEEEE
Confidence            999765433222222222457788999999899999888888765543321    22233332         26899999


Q ss_pred             ecCCCeEEEecCCCeEEEEe
Q psy11885        244 HQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd  263 (327)
                      +|++.+|||||.|++|+|||
T Consensus       321 s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          321 TDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSSCEEEEETTSCEEEEC
T ss_pred             cCCCCEEEEEcCCccEEecC
Confidence            99999999999999999996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=254.66  Aligned_cols=272  Identities=15%  Similarity=0.178  Sum_probs=206.5

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEEC----CCCe------EEEEe-c----------CCCceeeEEEe-CCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDI----TNNN------LRLKY-A----------HSDPVLDCCFQ-DAV   69 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~----~~~~------~~~~~-~----------h~~~v~~~~~~-~~~   69 (327)
                      ..|.+.|++++|+|++..+|++++.|+.|++||+    .+++      ..... .          |...|.+++|+ ++.
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            3455799999999965339999999999999999    7776      22222 2          46689999995 788


Q ss_pred             eEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC------------
Q psy11885         70 HSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ------------  137 (327)
Q Consensus        70 ~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~------------  137 (327)
                      .+++|+.|+.|++||........+..|..+|.+++|+|+++.|++++.|+.|++||+++++.+..+..            
T Consensus       122 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  201 (425)
T 1r5m_A          122 SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN  201 (425)
T ss_dssp             EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence            99999999999999955544556778999999999999999999999999999999988765443211            


Q ss_pred             ---------------------------------------------CCc--EEEEecCCCeEEEEeCCCeEEEEECCCCcc
Q psy11885        138 ---------------------------------------------PDK--VFTMSLCGEKFVVGTAGRKVCIWDLRNMGY  170 (327)
Q Consensus       138 ---------------------------------------------~~~--~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~  170 (327)
                                                                   ...  .+.+++++..+++++.|+.|++||+++.+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  281 (425)
T 1r5m_A          202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS  281 (425)
T ss_dssp             ----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred             ccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence                                                         111  234556678899999999999999987654


Q ss_pred             ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeE
Q psy11885        171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF  250 (327)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~l  250 (327)
                      ......  ......++.+.+++ .+++++.++.+.+|.......    ...+..|.         .++.+++|+|++++|
T Consensus       282 ~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~---------~~i~~~~~s~~~~~l  345 (425)
T 1r5m_A          282 QNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL----LALSIVDG---------VPIFAGRISQDGQKY  345 (425)
T ss_dssp             SEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE----EEEEECTT---------CCEEEEEECTTSSEE
T ss_pred             ceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE----eEecccCC---------ccEEEEEEcCCCCEE
Confidence            433221  22345778888877 777777788777755543321    11222221         258899999999999


Q ss_pred             EEecCCCeEEEEeCCCce--------------------eeeecCcCCc--ceEEEEECCCCCEEEEEEccc
Q psy11885        251 ATGGSDGYVNIWDGFNKK--------------------RLCQFHRYDT--GITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       251 asgs~dg~i~iWd~~~~~--------------------~~~~~~~~~~--~v~~l~fspdg~~la~~~~~~  299 (327)
                      ++++.||.|++||+.+++                    .+..+..|..  .|++++|+|+|++||+++.++
T Consensus       346 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  416 (425)
T 1r5m_A          346 AVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ  416 (425)
T ss_dssp             EEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS
T ss_pred             EEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc
Confidence            999999999999999887                    7788888866  999999999999999998554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.9e-35  Score=256.09  Aligned_cols=239  Identities=17%  Similarity=0.186  Sum_probs=177.2

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE---EEEecCCCceeeEEEe---CCceEEEEecCCcEEEEE
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL---RLKYAHSDPVLDCCFQ---DAVHSFSGGLDCTLKMFD   84 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~h~~~v~~~~~~---~~~~~~sgs~Dg~i~vwd   84 (327)
                      ...|++.|++++|+|+ +++|++|+.|++|+|||+.+++.   ..+.+|.++|.+++|+   ++..++||+.|++|++||
T Consensus         9 ~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             -----CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             cccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            3468889999999995 57999999999999999987752   3455799999999994   378999999999999999


Q ss_pred             cCCCce---eeeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCCce---eeeeeCC---CcEEEEecC------
Q psy11885         85 FNTQTE---TVIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSSRC---VGNYTQP---DKVFTMSLC------  147 (327)
Q Consensus        85 ~~~~~~---~~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~~~---~~~~~~~---~~~~~~~~~------  147 (327)
                      ++++..   ..+.+|...|.+++|+|+  +.+|++|+.|++|++||++++..   ...+..+   .....+++.      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            987632   345689999999999997  78999999999999999987532   1222211   122334433      


Q ss_pred             -----------CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccc
Q psy11885        148 -----------GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQ  216 (327)
Q Consensus       148 -----------~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  216 (327)
                                 +..+++++.|++|++||++..+..            ..+                              
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~------------~~~------------------------------  205 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW------------KEE------------------------------  205 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE------------EEE------------------------------
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCcc------------cee------------------------------
Confidence                       357899999999999997632100            000                              


Q ss_pred             cceeeeeeeeeccCCeeeEEEeeEEEEecCC----CeEEEecCCCeEEEEeCCCce----eeeecCcCCcceEEEEECCC
Q psy11885        217 KMKYAFKCHRIKEDGIEKIYPVNAISFHQEY----NTFATGGSDGYVNIWDGFNKK----RLCQFHRYDTGITSLCFSYD  288 (327)
Q Consensus       217 ~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~----~~lasgs~dg~i~iWd~~~~~----~~~~~~~~~~~v~~l~fspd  288 (327)
                         ..+..|.         .+|.+++|+|++    ++||+|+.|++|+||++.+..    ....+..|...|++++|||+
T Consensus       206 ---~~l~~h~---------~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  273 (316)
T 3bg1_A          206 ---QKLEAHS---------DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT  273 (316)
T ss_dssp             ---ECCBCCS---------SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT
T ss_pred             ---eecccCC---------CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC
Confidence               0011121         258899999987    789999999999999987621    12334567789999999999


Q ss_pred             CCEEEEEEccccccCC
Q psy11885        289 GNVLAIACSYNYELET  304 (327)
Q Consensus       289 g~~la~~~~~~~~~~~  304 (327)
                      |++||+++.++....+
T Consensus       274 g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          274 ANILAVSGGDNKVTLW  289 (316)
T ss_dssp             TCCEEEEESSSCEEEE
T ss_pred             CCEEEEEcCCCeEEEE
Confidence            9999999877655544

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-33  Score=246.71  Aligned_cols=246  Identities=15%  Similarity=0.233  Sum_probs=186.9

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|...|++++|+|+ +.+|++++.|++|++||+.+++.. ...+|...|.+++|+ ++..+++|+.|++|++||++...
T Consensus        62 ~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~  140 (319)
T 3frx_A           62 KGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC  140 (319)
T ss_dssp             ECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE
T ss_pred             eCCcccEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Confidence            357789999999995 589999999999999999999854 455799999999995 77899999999999999998766


Q ss_pred             eeeeecCCccEEEEEEeCC------CCEEEEEECCCeEEEEeCCCCceeeeeeCCC-c--EEEEecCCCeEEEEeCCCeE
Q psy11885         90 ETVIGTHDQPIRAVEYSDE------VNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-K--VFTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        90 ~~~~~~h~~~V~~l~~~~~------~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~d~~v  160 (327)
                      ...+.+|...|.++++.|.      +..+++++.|++|++||+++.+....+..+. .  ..++++++..+++++.|++|
T Consensus       141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i  220 (319)
T 3frx_A          141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI  220 (319)
T ss_dssp             EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            6667889999999999885      4589999999999999999988777665432 3  35567778899999999999


Q ss_pred             EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885        161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA  240 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  240 (327)
                      ++||+++.+.+.....   .....+++++|++..++++. ++.+.++.++...........+..+     ...+...+.+
T Consensus       221 ~iwd~~~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~  291 (319)
T 3frx_A          221 MLWNLAAKKAMYTLSA---QDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGY-----SKAAEPHAVS  291 (319)
T ss_dssp             EEEETTTTEEEEEEEC---CSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTC-----CGGGCCCEEE
T ss_pred             EEEECCCCcEEEEecC---CCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCcccccc-----ccCcCcceeE
Confidence            9999998764433221   22457788888876655544 4556665554322111110000000     0011224789


Q ss_pred             EEEecCCCeEEEecCCCeEEEEeCCCc
Q psy11885        241 ISFHQEYNTFATGGSDGYVNIWDGFNK  267 (327)
Q Consensus       241 v~~spd~~~lasgs~dg~i~iWd~~~~  267 (327)
                      ++|+|||++|++|+.||+|+|||+.++
T Consensus       292 ~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          292 LAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEECCCCCEEEEeecCceEEEEEEeec
Confidence            999999999999999999999998653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.1e-34  Score=259.71  Aligned_cols=280  Identities=13%  Similarity=0.196  Sum_probs=197.8

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe------------EEEEecCC------------CceeeEEEe-CC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN------------LRLKYAHS------------DPVLDCCFQ-DA   68 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~h~------------~~v~~~~~~-~~   68 (327)
                      +.+.|++++|+|+ +.+||+|+.||.|+|||+.+++            .....+|.            .+|.+++|+ ++
T Consensus        27 ~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           27 EADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             ccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            4589999999995 6899999999999999998765            33445787            889999996 44


Q ss_pred             --ceEEEEecCCcEEEEEcCCCce-----------------------------------------eeeecCCccEEEEEE
Q psy11885         69 --VHSFSGGLDCTLKMFDFNTQTE-----------------------------------------TVIGTHDQPIRAVEY  105 (327)
Q Consensus        69 --~~~~sgs~Dg~i~vwd~~~~~~-----------------------------------------~~~~~h~~~V~~l~~  105 (327)
                        ..+++++.|++|++||+..+..                                         ....+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              6899999999999999875332                                         113579999999999


Q ss_pred             eCCCCEEEEEECCCeEEEEeCCC-Cceeeee-------e-CCCcE--EEEecCC-CeEEEEeCCCeEEEEECCCCccc--
Q psy11885        106 SDEVNCILTGSWDTSVKMWDPRS-SRCVGNY-------T-QPDKV--FTMSLCG-EKFVVGTAGRKVCIWDLRNMGYI--  171 (327)
Q Consensus       106 ~~~~~~l~sgs~d~~i~lwdl~~-~~~~~~~-------~-~~~~~--~~~~~~~-~~~~~~~~d~~v~iwD~~~~~~~--  171 (327)
                      +|+++.|++| .|++|++||+++ ++++..+       . ....+  ..+++++ ..+++++.|+.|++||+++.+..  
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999998 899999999984 4444422       2 22234  4455666 78999999999999999987641  


Q ss_pred             -eeeecccce-----------eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCe------e
Q psy11885        172 -MQRRESSLK-----------FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI------E  233 (327)
Q Consensus       172 -~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~------~  233 (327)
                       .........           ....+++++|++..+++++. +.+.+|......   .....+..|......+      .
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence             111111110           14578889998887777766 777775544311   1122223332100000      0


Q ss_pred             eEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee--------------------------------cCcCCcceE
Q psy11885        234 KIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ--------------------------------FHRYDTGIT  281 (327)
Q Consensus       234 ~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~--------------------------------~~~~~~~v~  281 (327)
                      .+..+..++|+|++++|++|+.||.|++||+.+++.+..                                ...+...|.
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  420 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL  420 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred             ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence            000123489999999999999999999999988765431                                012345689


Q ss_pred             EEEECCCCCEEEEEEccc
Q psy11885        282 SLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       282 ~l~fspdg~~la~~~~~~  299 (327)
                      +++|+|+|.+||+++.+.
T Consensus       421 ~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          421 HTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             EEEECSSSSEEEEECSSC
T ss_pred             EEEECCCCCEEEEEecce
Confidence            999999999999996543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-34  Score=261.34  Aligned_cols=273  Identities=13%  Similarity=0.191  Sum_probs=210.4

Q ss_pred             CCeeEEEEecCCCcEEEEE----------ECCCcEEEEECCCCe---EEEEecCCCceeeEEEe-CCceEEEEecCCcEE
Q psy11885         16 DGITAVKFAPNSNQFLLAS----------SWDCNVSLYDITNNN---LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLK   81 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~----------~~d~~i~iwd~~~~~---~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~   81 (327)
                      ..|++++|+|++..+|+++          +.|+.|++||+.+++   ......|...|.+++|+ ++.++++|+.|+.|+
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            4789999999765599999          899999999998875   34445688999999995 788999999999999


Q ss_pred             EEEcCC----C-ceeeeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCc------eeeee---e-C--CCcEEE
Q psy11885         82 MFDFNT----Q-TETVIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSR------CVGNY---T-Q--PDKVFT  143 (327)
Q Consensus        82 vwd~~~----~-~~~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~------~~~~~---~-~--~~~~~~  143 (327)
                      +||+..    . ....+..|...|.+++|+|+ +++|++++.|++|++||+++++      ....+   . .  ....+.
T Consensus        93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  172 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA  172 (416)
T ss_dssp             EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred             EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence            999987    2 23456789999999999998 8999999999999999999876      22222   1 2  223455


Q ss_pred             EecC-CCeEEEEeCCCeEEEEECCCCccceeeeccc----ceeeeEEeEEeeCCC-ceEEEeecC---eEEEEEccCCcc
Q psy11885        144 MSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRRESS----LKFQTRCIKCFPNKQ-GYVLSSIEG---RAAVEYLDTGPE  214 (327)
Q Consensus       144 ~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~---~~~i~~~~~~~~  214 (327)
                      ++++ +..+++++.|+.|++||+++.+.+.......    ......+++++|++. .+++++.++   .+.+|.......
T Consensus       173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~  252 (416)
T 2pm9_A          173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT  252 (416)
T ss_dssp             ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS
T ss_pred             eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC
Confidence            6666 6789999999999999999876543322211    033467888998864 566666666   666655443211


Q ss_pred             cccceeeee-eeeeccCCeeeEEEeeEEEEec-CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCC-CE
Q psy11885        215 MQKMKYAFK-CHRIKEDGIEKIYPVNAISFHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDG-NV  291 (327)
Q Consensus       215 ~~~~~~~~~-~h~~~~~~~~~~~~v~~v~~sp-d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg-~~  291 (327)
                         ....+. .|.         .+|.+++|+| ++++|++++.||+|++||+.+++.+..+..|...|++++|+|++ ++
T Consensus       253 ---~~~~~~~~~~---------~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  320 (416)
T 2pm9_A          253 ---PLQTLNQGHQ---------KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL  320 (416)
T ss_dssp             ---CSBCCCSCCS---------SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred             ---CcEEeecCcc---------CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence               111122 222         2588999999 99999999999999999999999999998999999999999999 89


Q ss_pred             EEEEEcccc
Q psy11885        292 LAIACSYNY  300 (327)
Q Consensus       292 la~~~~~~~  300 (327)
                      ||+++.++.
T Consensus       321 l~s~~~d~~  329 (416)
T 2pm9_A          321 FACASFDNK  329 (416)
T ss_dssp             EEECCSSSE
T ss_pred             EEEEecCCc
Confidence            998876543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=248.61  Aligned_cols=236  Identities=19%  Similarity=0.196  Sum_probs=179.7

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-----EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-----LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      ++.+|++++|+|+  ..|++|+.||+|+|||+.+++..     ...+|.+.|.+++|+ ++.++++|+.|++|++||+++
T Consensus        81 ~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           81 TEAGVADLTWVGE--RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             ESSCEEEEEEETT--TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cCCCEEEEEEeCC--CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            4568999999995  36889999999999999887621     234799999999995 788999999999999999998


Q ss_pred             Cce-eeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeeeeC---CCcEEE--EecC-CCeEEEEeCCCe
Q psy11885         88 QTE-TVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNYTQ---PDKVFT--MSLC-GEKFVVGTAGRK  159 (327)
Q Consensus        88 ~~~-~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~~---~~~~~~--~~~~-~~~~~~~~~d~~  159 (327)
                      +.. ..+.+|...|.+++|++++ ..|++++.|++|++||++++++...+..   ...+.+  +.+. +..+++|+.|++
T Consensus       159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~  238 (344)
T 4gqb_B          159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT  238 (344)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred             CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence            865 4577899999999999987 5789999999999999999988776643   223334  4443 456889999999


Q ss_pred             EEEEECCCCccceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      |++||+++.+.+.....  +.....+++++|++. .+++++.++.+.+|....+.     ...+..|.         ..|
T Consensus       239 v~~wd~~~~~~~~~~~~--h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-----~~~~~~H~---------~~V  302 (344)
T 4gqb_B          239 VSLVDTKSTSCVLSSAV--HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-----LFRSQAHR---------DFV  302 (344)
T ss_dssp             EEEEESCC--CCEEEEC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-----EEEECCCS---------SCE
T ss_pred             EEEEECCCCcEEEEEcC--CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-----EEEEcCCC---------CCE
Confidence            99999998765433222  223457888999874 46677888888775433321     11222332         368


Q ss_pred             eEEEEecCCCe-EEEecCCCeEEEEeCCCc
Q psy11885        239 NAISFHQEYNT-FATGGSDGYVNIWDGFNK  267 (327)
Q Consensus       239 ~~v~~spd~~~-lasgs~dg~i~iWd~~~~  267 (327)
                      ++++|+|+++. |+|||.|++|++|++.+.
T Consensus       303 ~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          303 RDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            99999999875 679999999999998764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-34  Score=258.73  Aligned_cols=277  Identities=13%  Similarity=0.158  Sum_probs=209.3

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC----C-eEEEEecCCCceeeEEEe-C-CceEEEEecCCcEEEEEc
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN----N-NLRLKYAHSDPVLDCCFQ-D-AVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~----~-~~~~~~~h~~~v~~~~~~-~-~~~~~sgs~Dg~i~vwd~   85 (327)
                      .|.+.|++++|+|+ +.+|++++.|+.|++||+..    . .......|..+|.+++|+ + +..+++++.|+.|++||+
T Consensus        65 ~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           65 QVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             ecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            46789999999995 57899999999999999987    2 344555799999999996 4 789999999999999999


Q ss_pred             CCCc------ee-e---eecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeeeCC-------CcEEE--Ee
Q psy11885         86 NTQT------ET-V---IGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYTQP-------DKVFT--MS  145 (327)
Q Consensus        86 ~~~~------~~-~---~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-------~~~~~--~~  145 (327)
                      .+..      .. .   ...|...|.+++|+|+ +..|++++.|+.|++||+++++++..+..+       ..+.+  ++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence            8765      22 1   2468899999999998 789999999999999999999888776543       33444  45


Q ss_pred             cCC-CeEEEEeCCC---eEEEEECCCCccceeeecccceeeeEEeEEee-CCCceEEEeecCeEEEEEccCCccccccee
Q psy11885        146 LCG-EKFVVGTAGR---KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKY  220 (327)
Q Consensus       146 ~~~-~~~~~~~~d~---~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  220 (327)
                      +++ ..+++++.|+   .|++||+++.+...............+++++| ++..+++++.++.+.+|......    ...
T Consensus       224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~----~~~  299 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE----QLS  299 (416)
T ss_dssp             SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC----EEE
T ss_pred             CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc----cce
Confidence            554 4789999998   99999999764322222102233457888888 77778888888887775444332    122


Q ss_pred             eeeeeeeccCCeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCceeeeecCc------------------------
Q psy11885        221 AFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHR------------------------  275 (327)
Q Consensus       221 ~~~~h~~~~~~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~~~~~~~~------------------------  275 (327)
                      .+..|.         .+|.+++|+|++ .+|++++.|+.|++||+.+++.......                        
T Consensus       300 ~~~~~~---------~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (416)
T 2pm9_A          300 QFPARG---------NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEK  370 (416)
T ss_dssp             EEECSS---------SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSC
T ss_pred             eecCCC---------CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccc
Confidence            223332         258899999999 8999999999999999887654332211                        


Q ss_pred             -----------CCcceEEEEECCCCCEEEEEEccccccC
Q psy11885        276 -----------YDTGITSLCFSYDGNVLAIACSYNYELE  303 (327)
Q Consensus       276 -----------~~~~v~~l~fspdg~~la~~~~~~~~~~  303 (327)
                                 +..++.+++|||||++||+++.+.....
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~  409 (416)
T 2pm9_A          371 PSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSI  409 (416)
T ss_dssp             CCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCC
T ss_pred             cccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEE
Confidence                       4567889999999999999875544333

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-32  Score=233.60  Aligned_cols=263  Identities=16%  Similarity=0.259  Sum_probs=203.7

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      ...|.+.|++++| |+ +.+|++++.||.|++||+.+++. .....|...|.+++|+ ++..+++|+.|+.|++|++...
T Consensus        14 l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~   91 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT   91 (313)
T ss_dssp             ECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred             hhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence            4568899999999 74 57899999999999999988875 4455789999999995 7889999999999999998764


Q ss_pred             c----eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEE--EEec-CCCeEEEEeCCCeE
Q psy11885         89 T----ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVF--TMSL-CGEKFVVGTAGRKV  160 (327)
Q Consensus        89 ~----~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~d~~v  160 (327)
                      .    ...+..|...|.++.|  +++.+++++.|+.|++||  .++....+..+ ..+.  .+.+ +++.+++++.|+.|
T Consensus        92 ~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  167 (313)
T 3odt_A           92 SGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI  167 (313)
T ss_dssp             TTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCE
T ss_pred             CCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCE
Confidence            3    2356789999999999  568999999999999999  55555555543 2333  3444 78899999999999


Q ss_pred             EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885        161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA  240 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  240 (327)
                      ++||.+...   ............++++.+++. +++++.++.+.++.......    ...+..|.         .+|.+
T Consensus       168 ~i~d~~~~~---~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~----~~~~~~~~---------~~i~~  230 (313)
T 3odt_A          168 KLWQNDKVI---KTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV----LRTYEGHE---------SFVYC  230 (313)
T ss_dssp             EEEETTEEE---EEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE----EEEEECCS---------SCEEE
T ss_pred             EEEecCceE---EEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh----hhhhhcCC---------ceEEE
Confidence            999954321   112222333457788888877 78888888877765544321    22222232         25899


Q ss_pred             EEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       241 v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      ++|+|++ .|++++.||.|++||+.+++.+..+..|..+|++++|+|+|+++ +++.+
T Consensus       231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~d  286 (313)
T 3odt_A          231 IKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDII-VGSSD  286 (313)
T ss_dssp             EEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEE-EEETT
T ss_pred             EEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEE-EEeCC
Confidence            9999999 69999999999999999999998888888899999999999855 56643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.2e-33  Score=245.09  Aligned_cols=258  Identities=15%  Similarity=0.256  Sum_probs=188.5

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE---EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcC
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL---RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      ...|.+.|++++|+|+ +.+|++++.|++|++||...+..   ....+|..+|.+++|+ ++.++++|+.|++|++||++
T Consensus        57 ~~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~  135 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD  135 (345)
T ss_dssp             CSSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             ccccCCcEEEEEECCC-CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence            3568889999999995 57999999999999999987642   3345799999999995 78899999999999999998


Q ss_pred             CCce----eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc--eeeeeeCC-CcE--EEEecCCCeEEEEeCC
Q psy11885         87 TQTE----TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR--CVGNYTQP-DKV--FTMSLCGEKFVVGTAG  157 (327)
Q Consensus        87 ~~~~----~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~--~~~~~~~~-~~~--~~~~~~~~~~~~~~~d  157 (327)
                      ....    ..+..|...|.+++|+|++++|++|+.|++|++||+++++  +...+..+ ..+  ++++++++.|++++.|
T Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD  215 (345)
T ss_dssp             TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence            7542    2456899999999999999999999999999999998775  33445443 234  4566778899999999


Q ss_pred             CeEEEEECCCCccce--------------eeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeee
Q psy11885        158 RKVCIWDLRNMGYIM--------------QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFK  223 (327)
Q Consensus       158 ~~v~iwD~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  223 (327)
                      ++|++||........              .............+++++++..+++++.++.+.++..+...........+.
T Consensus       216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~  295 (345)
T 3fm0_A          216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT  295 (345)
T ss_dssp             SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred             CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence            999999974322100              000011122346778888888899999999988877654432222222222


Q ss_pred             eeeeccCCeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCceeeeec
Q psy11885        224 CHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       224 ~h~~~~~~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~~~~~~  273 (327)
                      .|...    .|...|++++|+|++ .+|||||.||+|++|+..+++.+...
T Consensus       296 ~~~~~----~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          296 AHLHQ----AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EEETT----SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             eeecc----cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            22211    122369999999998 48999999999999999887766544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.1e-32  Score=239.20  Aligned_cols=241  Identities=15%  Similarity=0.197  Sum_probs=189.0

Q ss_pred             EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC
Q psy11885         51 RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS  128 (327)
Q Consensus        51 ~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~  128 (327)
                      ..+.+|.+.|.+++|+ ++..+++|+.||+|++||++++.. ..+..|..+|.+++|++++++|++|+.|++|++||+++
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~   86 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            3455799999999995 788999999999999999988765 45678999999999999999999999999999999999


Q ss_pred             CceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeC-CCceEEEeecCeE
Q psy11885        129 SRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPN-KQGYVLSSIEGRA  204 (327)
Q Consensus       129 ~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  204 (327)
                      ++++..+..+. .+  +++++++..+++++.|++|++||+++........ ........+++++|. +..+++++.++.+
T Consensus        87 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~sgs~D~~v  165 (304)
T 2ynn_A           87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (304)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE-CCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred             CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh-cccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence            99888877543 34  4566678899999999999999998754322221 122234578888884 5667888888888


Q ss_pred             EEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec--CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEE
Q psy11885        205 AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ--EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS  282 (327)
Q Consensus       205 ~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp--d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~  282 (327)
                      .+|........    ..+..+        +...+..++|+|  ++++|++|+.|++|++||+.+++.+..+.+|...|.+
T Consensus       166 ~iwd~~~~~~~----~~~~~~--------~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~  233 (304)
T 2ynn_A          166 KVWSLGQSTPN----FTLTTG--------QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF  233 (304)
T ss_dssp             EEEETTCSSCS----EEEECC--------CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             EEEECCCCCcc----ceeccC--------CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEE
Confidence            87655332211    111111        001467788876  7789999999999999999999999999999999999


Q ss_pred             EEECCCCCEEEEEEccccccCC
Q psy11885        283 LCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       283 l~fspdg~~la~~~~~~~~~~~  304 (327)
                      ++|+|++++||+|+.++....+
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~iW  255 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLKIW  255 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEE
Confidence            9999999999999886554433

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-33  Score=252.70  Aligned_cols=237  Identities=18%  Similarity=0.241  Sum_probs=189.8

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|++++|+|+ +.+|++|+.|++|++||+.+++.. ...+|...|.+++|+ ++.++++|+.|++|++||++++.
T Consensus       147 ~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~  225 (410)
T 1vyh_C          147 KGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY  225 (410)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred             eccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            347789999999995 579999999999999999988754 445799999999995 77899999999999999999876


Q ss_pred             e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEEE--EecC------------------
Q psy11885         90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVFT--MSLC------------------  147 (327)
Q Consensus        90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~~--~~~~------------------  147 (327)
                      . ..+.+|...|.++.++++++.|++|+.|++|++||++++++...+..+. .+.+  +++.                  
T Consensus       226 ~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (410)
T 1vyh_C          226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG  305 (410)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred             EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence            5 4577899999999999999999999999999999999998887775433 3434  3332                  


Q ss_pred             --CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeee
Q psy11885        148 --GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCH  225 (327)
Q Consensus       148 --~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h  225 (327)
                        +..+++|+.|++|++||++++..+.....  ......++.++|++..+++++.++.+.+|.+....    ....+..|
T Consensus       306 ~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~----~~~~~~~h  379 (410)
T 1vyh_C          306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----CMKTLNAH  379 (410)
T ss_dssp             --CCEEEEEETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC----CCEEEECC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----eEEEEcCC
Confidence              45799999999999999998764433222  22345778899998888999888888875543322    12223333


Q ss_pred             eeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeC
Q psy11885        226 RIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       226 ~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~  264 (327)
                      .         ..|.+++|+|++.+||+||.||+|+||+.
T Consensus       380 ~---------~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          380 E---------HFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             S---------SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             C---------CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            2         25899999999999999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.2e-33  Score=241.63  Aligned_cols=237  Identities=16%  Similarity=0.199  Sum_probs=193.4

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|...|++++|+|+ +.++++++.|++|++||+.+++.. ....|...+.+++|+ ++.++++|+.|+.|++||++++.
T Consensus        77 ~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~  155 (321)
T 3ow8_A           77 EGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK  155 (321)
T ss_dssp             CCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred             ccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence            457789999999995 579999999999999999998854 444677888999995 78899999999999999999876


Q ss_pred             ee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         90 ET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        90 ~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      .. .+..|...|.+++|+|++++|++|+.|+.|++||+++++++..+..+   ...+++++++..+++++.|+.|++||+
T Consensus       156 ~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~  235 (321)
T 3ow8_A          156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV  235 (321)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEET
T ss_pred             eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEEC
Confidence            54 46678889999999999999999999999999999999988877643   345667788889999999999999999


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      ++.+......  .......+++++|++..+++++.++.+.+|.......    ...+..|.         .+|.+++|+|
T Consensus       236 ~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~----~~~~~~h~---------~~v~~v~~s~  300 (321)
T 3ow8_A          236 QHANLAGTLS--GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC----VHTFFDHQ---------DQVWGVKYNG  300 (321)
T ss_dssp             TTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCCS---------SCEEEEEECT
T ss_pred             CCcceeEEEc--CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE----EEEEcCCC---------CcEEEEEECC
Confidence            8765432221  1223357788999988899999999988866554322    12222232         2589999999


Q ss_pred             CCCeEEEecCCCeEEEEeC
Q psy11885        246 EYNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd~  264 (327)
                      ++++|++++.||+|+|||.
T Consensus       301 ~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          301 NGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             TSSEEEEEETTCCEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEeC
Confidence            9999999999999999995

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1e-32  Score=244.82  Aligned_cols=272  Identities=12%  Similarity=0.080  Sum_probs=206.1

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--E-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--L-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      .|++.|++++|+|+ +.+|++++.|+.|++||+.+++  . .....|...|.+++|+ ++..+++++.|+.|++||++++
T Consensus         6 ~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C            6 FLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             SCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             ccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence            37789999999995 5799999999999999999985  3 4445799999999995 7889999999999999999877


Q ss_pred             cee---eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce---eeeeeC--CCcE--EEEecCCCeEEEEeCCC
Q psy11885         89 TET---VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC---VGNYTQ--PDKV--FTMSLCGEKFVVGTAGR  158 (327)
Q Consensus        89 ~~~---~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~---~~~~~~--~~~~--~~~~~~~~~~~~~~~d~  158 (327)
                      ...   .+..|...|.+++|+|+++.|++++.|+.|++||++.++.   ...+..  ...+  +.++++++.+++++.|+
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  164 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  164 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence            532   3467899999999999999999999999999999988763   222221  2334  45566788999999999


Q ss_pred             eEEEEECCC------------------CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccccee
Q psy11885        159 KVCIWDLRN------------------MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY  220 (327)
Q Consensus       159 ~v~iwD~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  220 (327)
                      .|++||++.                  .+.+...  ........++.++|+++.+++++.++.+.+|.......    ..
T Consensus       165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~  238 (372)
T 1k8k_C          165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES--SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA----VA  238 (372)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC--CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE----EE
T ss_pred             CEEEEEcccccccccccccccccccchhhheEec--CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce----eE
Confidence            999999752                  2211111  11223457788889888888888888888766544322    12


Q ss_pred             eeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC--cee-----------------------------
Q psy11885        221 AFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN--KKR-----------------------------  269 (327)
Q Consensus       221 ~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~--~~~-----------------------------  269 (327)
                      .+..|.         .++.+++|+|++.+|++| .|+.|++|++.+  ++.                             
T Consensus       239 ~~~~~~---------~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
T 1k8k_C          239 TLASET---------LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK  308 (372)
T ss_dssp             EEECSS---------CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred             EEccCC---------CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence            222221         258899999999988888 899999999877  421                             


Q ss_pred             ---e------eec-CcCCcceEEEEEC-CCC---CEEEEEEccccc
Q psy11885        270 ---L------CQF-HRYDTGITSLCFS-YDG---NVLAIACSYNYE  301 (327)
Q Consensus       270 ---~------~~~-~~~~~~v~~l~fs-pdg---~~la~~~~~~~~  301 (327)
                         .      ..+ .+|..+|++++|+ ++|   ++||+++.++..
T Consensus       309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i  354 (372)
T 1k8k_C          309 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM  354 (372)
T ss_dssp             C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred             cccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCce
Confidence               0      223 3788899999965 777   999999865443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.4e-33  Score=250.57  Aligned_cols=270  Identities=13%  Similarity=0.151  Sum_probs=203.5

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-eee
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-TVI   93 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-~~~   93 (327)
                      .+....|+|+ +.+|++++.|+.|++||+.+++..... .|...|.+++|+ ++..+++|+.|++|++||++++.. ..+
T Consensus        99 ~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  177 (420)
T 3vl1_A           99 YTAVDTAKLQ-MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL  177 (420)
T ss_dssp             EEEEEEECSS-SCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred             ceEEEEEecC-CCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence            3445577885 578999999999999999998876654 799999999995 778999999999999999987754 456


Q ss_pred             ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC----CcEE-----------------------EEec
Q psy11885         94 GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP----DKVF-----------------------TMSL  146 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~----~~~~-----------------------~~~~  146 (327)
                      ..|...|.+++|+|+++.|++++.|++|++||+++++++..+..+    ..+.                       .+++
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~  257 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT  257 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence            789999999999999999999999999999999999888776531    1122                       2234


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceeeeeee
Q psy11885        147 CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCH  225 (327)
Q Consensus       147 ~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h  225 (327)
                      ++..+++++.|+.|++||+++.+.+.... ........+++++|++. .+++++.++.+.+|.......   ....+..|
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~  333 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKEQTIQLP-SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---PVGEFLIN  333 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCCEEEEEC-CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEEES
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeEEcc-cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---chhhhhcc
Confidence            57789999999999999999876543322 22233467888999887 777888888888765544321   11222221


Q ss_pred             eeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee---------eeecCcCCcceEEEEECCCCC---EEE
Q psy11885        226 RIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR---------LCQFHRYDTGITSLCFSYDGN---VLA  293 (327)
Q Consensus       226 ~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~---------~~~~~~~~~~v~~l~fspdg~---~la  293 (327)
                      ..        .++.++. .|++++|++++.|++|++|++.+.+.         ...+..+...|.+++|+||++   .|+
T Consensus       334 ~~--------~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~  404 (420)
T 3vl1_A          334 EG--------TPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVL  404 (420)
T ss_dssp             TT--------SCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEE
T ss_pred             CC--------CCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEE
Confidence            11        1467774 46788999999999999999876322         223446777899999999999   555


Q ss_pred             EEEcccc
Q psy11885        294 IACSYNY  300 (327)
Q Consensus       294 ~~~~~~~  300 (327)
                      +.+.++.
T Consensus       405 a~g~~g~  411 (420)
T 3vl1_A          405 EVGKNNF  411 (420)
T ss_dssp             EEETTTE
T ss_pred             EEcCCce
Confidence            5555443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=255.45  Aligned_cols=288  Identities=14%  Similarity=0.103  Sum_probs=204.7

Q ss_pred             eecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC---Ce---EEEEecCCCceeeEEEe-CCceEEEEecCCcE
Q psy11885          8 YSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN---NN---LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTL   80 (327)
Q Consensus         8 ~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~---~~---~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i   80 (327)
                      ..+...|.+.|++++|+|.++.+|++|+.|++|++||+.+   +.   ....+.|..+|.+++|+ ++..+++|+.|++|
T Consensus        56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i  135 (437)
T 3gre_A           56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQI  135 (437)
T ss_dssp             EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence            3444668899999999993357999999999999999876   43   23445799999999995 67899999999999


Q ss_pred             EEEEcC---CCcee-eee----------c--CCccEEEEE--EeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC---CC
Q psy11885         81 KMFDFN---TQTET-VIG----------T--HDQPIRAVE--YSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ---PD  139 (327)
Q Consensus        81 ~vwd~~---~~~~~-~~~----------~--h~~~V~~l~--~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~---~~  139 (327)
                      ++||++   .+... ...          .  +...+.++.  ++++++.|++|+.|++|++||+++++++..+..   ..
T Consensus       136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~  215 (437)
T 3gre_A          136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG  215 (437)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred             EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence            999995   33221 111          1  455667766  557899999999999999999999999888765   23


Q ss_pred             cE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEee----CCCceEEEeecCeEEEEEccCCc
Q psy11885        140 KV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFP----NKQGYVLSSIEGRAAVEYLDTGP  213 (327)
Q Consensus       140 ~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~  213 (327)
                      .+  +++++++..+++++.|+.|++||+++.+.+.... ........++.+.|    ++..+++++.++.+.+|....+.
T Consensus       216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          216 AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS-FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB-CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe-cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence            34  4456678899999999999999999865433221 11223456665554    33355666666666665554333


Q ss_pred             ccccceeeeeeeee-------cc----------CCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc-
Q psy11885        214 EMQKMKYAFKCHRI-------KE----------DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-  275 (327)
Q Consensus       214 ~~~~~~~~~~~h~~-------~~----------~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~-  275 (327)
                      ...    .+..|..       ..          .+..+..+|.+++|+ ++++|++|+.|+.|++||+.+++.+..+.+ 
T Consensus       295 ~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          295 CQY----AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP  369 (437)
T ss_dssp             EEE----EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred             EEE----EEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence            211    1111110       00          000123358899999 778999999999999999998877666554 


Q ss_pred             ------------------------------------CCcceEEEEECCC--CCEEEEEEccccc
Q psy11885        276 ------------------------------------YDTGITSLCFSYD--GNVLAIACSYNYE  301 (327)
Q Consensus       276 ------------------------------------~~~~v~~l~fspd--g~~la~~~~~~~~  301 (327)
                                                          |...|++++|+++  +.+|++|+.++..
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I  433 (437)
T 3gre_A          370 SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLI  433 (437)
T ss_dssp             --CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCE
T ss_pred             cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceE
Confidence                                                6778999999998  7788888766543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-34  Score=257.23  Aligned_cols=246  Identities=13%  Similarity=0.093  Sum_probs=180.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC--eEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN--NLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~--~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      ..+.+.|++++|+|+ +.+|++++.|+.|++||+.++  +.. ....|..+|.+++|+ ++.++++|+.|++|++||+.+
T Consensus         8 ~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             ecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            335568999999995 579999999999999999987  433 344699999999995 778999999999999999988


Q ss_pred             Cc----eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc---eeeeeeC--CCcE--EEEecCCCeEEEEeC
Q psy11885         88 QT----ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR---CVGNYTQ--PDKV--FTMSLCGEKFVVGTA  156 (327)
Q Consensus        88 ~~----~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~---~~~~~~~--~~~~--~~~~~~~~~~~~~~~  156 (327)
                      +.    ...+..|...|.+++|+|+++.|++++.|++|++||+++++   +...+..  ...+  +.+++++..+++++.
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence            76    34566899999999999999999999999999999999876   3455543  3334  445667789999999


Q ss_pred             CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        157 GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       157 d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      |+.|++||++..+........            +                  +............+ .|         ..
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~------------~------------------~~~~~~~~~~~~~~-~~---------~~  206 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEAS------------V------------------WGSRLPFNTVCAEY-PS---------GG  206 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSC------------S------------------SCSCCCEEEEEECC-CC---------SS
T ss_pred             CCEEEEEEEEecccCCCcccc------------c------------------cccccchhhhhhcc-cC---------Cc
Confidence            999999999754311000000            0                  00000000000011 11         12


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCcee----eeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR----LCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~----~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      +|.+++|+|++++|++|+.||+|++||+.+++.    +..+..|..+|.+++|+|||++|++++.+
T Consensus       207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  272 (377)
T 3dwl_C          207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY  272 (377)
T ss_dssp             SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS
T ss_pred             eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC
Confidence            588999999999999999999999999998877    77788898899999999999999988654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.9e-32  Score=265.26  Aligned_cols=273  Identities=17%  Similarity=0.239  Sum_probs=215.3

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|++++|+|+ +.+|++++.||.|+|||+.+++.. ....|..+|.+++|+ ++..+++|+.||.|++||+.++.
T Consensus        10 ~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~   88 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE   88 (814)
T ss_dssp             EEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred             ecCCCceEEEEECCC-CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            446789999999995 579999999999999999998854 445699999999995 78899999999999999998876


Q ss_pred             e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC-ceeeeeeCC-CcEE--EEec-CCCeEEEEeCCCeEEEE
Q psy11885         90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS-RCVGNYTQP-DKVF--TMSL-CGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~-~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~d~~v~iw  163 (327)
                      . ..+..|...|.+++|+|+++.|++++.|++|++||++++ .+...+..+ ..+.  .+++ ++..+++++.|+.|++|
T Consensus        89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vw  168 (814)
T 3mkq_A           89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW  168 (814)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            5 456789999999999999999999999999999999886 555555543 3344  4555 56789999999999999


Q ss_pred             ECCCCccceeeecccceeeeEEeEEee--CCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885        164 DLRNMGYIMQRRESSLKFQTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI  241 (327)
Q Consensus       164 D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  241 (327)
                      |+++.......... ......++.++|  ++..+++++.++.+.+|.......    ...+..|.         .+|.++
T Consensus       169 d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~---------~~v~~~  234 (814)
T 3mkq_A          169 SLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----VATLEGHM---------SNVSFA  234 (814)
T ss_dssp             ETTCSSCSEEEECC-CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE----EEEEECCS---------SCEEEE
T ss_pred             ECCCCcceeEEecC-CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE----EEEEcCCC---------CCEEEE
Confidence            99876543222211 112346677887  667778888888777755443321    22222222         258899


Q ss_pred             EEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCC--EEEEEEccc
Q psy11885        242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGN--VLAIACSYN  299 (327)
Q Consensus       242 ~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~--~la~~~~~~  299 (327)
                      +|+|++++|++|+.||.|++||..+++.+..+..+...+++++|+|+|+  ++++++...
T Consensus       235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  294 (814)
T 3mkq_A          235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG  294 (814)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCC
Confidence            9999999999999999999999999998888888888999999999998  577665543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.7e-32  Score=241.88  Aligned_cols=236  Identities=17%  Similarity=0.296  Sum_probs=187.0

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC-------eEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-------NLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~   85 (327)
                      |...|.+++|+|+ +.++++++.|+.+++|++...       .......|...|.+++|+ ++..+++++.|++|++||+
T Consensus       105 ~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~  183 (354)
T 2pbi_B          105 PCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV  183 (354)
T ss_dssp             SSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             CCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeC
Confidence            5568999999995 579999999999999998643       123445799999999995 6778999999999999999


Q ss_pred             CCCce-eeeecCCccEEEEEEeC--CCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCe
Q psy11885         86 NTQTE-TVIGTHDQPIRAVEYSD--EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRK  159 (327)
Q Consensus        86 ~~~~~-~~~~~h~~~V~~l~~~~--~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~  159 (327)
                      +++.. ..+.+|...|.+++++|  +++.|++|+.|++|++||+++++++..+..+. .+  +.+++++..+++++.|++
T Consensus       184 ~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~  263 (354)
T 2pbi_B          184 ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT  263 (354)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence            98765 45778999999999987  56899999999999999999999888876533 34  456667889999999999


Q ss_pred             EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      |++||+++.+.+.............++.++|++..+++++.++.+.+|....+..    ...+..|.         .+|.
T Consensus       264 v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~----~~~l~~h~---------~~v~  330 (354)
T 2pbi_B          264 CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR----VSILFGHE---------NRVS  330 (354)
T ss_dssp             EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE----EEEECCCS---------SCEE
T ss_pred             EEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce----EEEEECCC---------CcEE
Confidence            9999999765432222222223456788889988888888888888866543321    11222332         3689


Q ss_pred             EEEEecCCCeEEEecCCCeEEEEe
Q psy11885        240 AISFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       240 ~v~~spd~~~lasgs~dg~i~iWd  263 (327)
                      +++|+|++++||+|+.|++|+||+
T Consensus       331 ~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          331 TLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999999996

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=232.24  Aligned_cols=270  Identities=13%  Similarity=0.147  Sum_probs=194.6

Q ss_pred             eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe---cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee-e
Q psy11885         18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY---AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET-V   92 (327)
Q Consensus        18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~-~   92 (327)
                      .++|+||++ + +||+ +.|++|+|||++++++....   .|...|.+++|+ ++.++++|+.|++|++||+++++.. .
T Consensus        28 ~~~l~WS~~-~-~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           28 LNLVDWSSG-N-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             CBCEEECTT-S-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ceEEEECCC-C-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            578999984 3 6665 46999999999999864433   477789999995 7889999999999999999988753 5


Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc-eeeeeeCCC---cEEEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR-CVGNYTQPD---KVFTMSLCGEKFVVGTAGRKVCIWDLRNM  168 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iwD~~~~  168 (327)
                      +.+|...+.++.+  ++..+++++.++.+++|+..... .+..+..+.   ....+.+.+..+++++.|+.|++||+++.
T Consensus       105 ~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          105 MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             EECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             ecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence            6788888776654  55899999999999999988754 334444322   23445667889999999999999999876


Q ss_pred             ccceee--ecccceeeeEEeEEeeCCCceE-EEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        169 GYIMQR--RESSLKFQTRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       169 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      +.....  ..........++.+.+....++ +++......+..|+........  . ..+         ...+..+.|+|
T Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~--~-~~~---------~~~v~~~~~~~  250 (318)
T 4ggc_A          183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS--A-VDA---------HSQVCSILWSP  250 (318)
T ss_dssp             TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE--E-EEC---------SSCEEEEEEET
T ss_pred             cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc--c-ccc---------eeeeeeeeecc
Confidence            532111  1111222335566666554443 3343333344445543221110  0 111         12477899999


Q ss_pred             CCCeEEEe--cCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        246 EYNTFATG--GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       246 d~~~lasg--s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      +++.++++  +.|++|+|||+.+++.+..+.+|..+|++|+|||||++||+|+.++....+
T Consensus       251 ~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          251 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            99988764  479999999999999999999999999999999999999999877655443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.7e-32  Score=237.45  Aligned_cols=250  Identities=18%  Similarity=0.297  Sum_probs=181.9

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|...|++++|+|+ +.+|++++.|++|++||+.+++. ....+|...|.+++|+ ++.++++|+.|++|++||+....
T Consensus        73 ~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~  151 (343)
T 2xzm_R           73 TGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC  151 (343)
T ss_dssp             CCCSSCEEEEEECSS-TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE
T ss_pred             ccCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc
Confidence            457789999999995 57999999999999999998875 4455799999999995 78899999999999999997543


Q ss_pred             eeee---ecCCccEEEEEEeCCC----------CEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCCeEEE
Q psy11885         90 ETVI---GTHDQPIRAVEYSDEV----------NCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGEKFVV  153 (327)
Q Consensus        90 ~~~~---~~h~~~V~~l~~~~~~----------~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~~~~~  153 (327)
                      ....   ..|...|.+++|+|++          .++++++.|++|++||. ..+....+..+ ..+  +++++++..|++
T Consensus       152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  230 (343)
T 2xzm_R          152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT  230 (343)
T ss_dssp             EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE
Confidence            3332   2688899999999987          78999999999999994 44555555443 233  456677889999


Q ss_pred             EeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeec--cCC
Q psy11885        154 GTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK--EDG  231 (327)
Q Consensus       154 ~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~--~~~  231 (327)
                      ++.|+.|++||+++..........  .....+++++|++.. ++++.++.+.+|.........  ...+..+...  ...
T Consensus       231 gs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~~-la~~~d~~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~  305 (343)
T 2xzm_R          231 GGKDKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQW-VAVGTDQGVKIFNLMTQSKAP--VCTIEAEPITKAEGQ  305 (343)
T ss_dssp             EETTCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSCE-EEEEESSCEEEEESSSCCSCS--EEECCCCSGGGBTTB
T ss_pred             EcCCCeEEEEECCCCcccceeecC--CCcEEEEEECCCCCE-EEEECCCCEEEEEeCCCCCCc--eEEeecCcchhhhhh
Confidence            999999999999654332221111  123577888888654 455567777776554332211  0011100000  000


Q ss_pred             eeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCce
Q psy11885        232 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK  268 (327)
Q Consensus       232 ~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~  268 (327)
                      .++...+.+++|+|++++||+|+.||+|++|++.++.
T Consensus       306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             CCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             cCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            0223358899999999999999999999999987653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.4e-31  Score=234.32  Aligned_cols=237  Identities=14%  Similarity=0.176  Sum_probs=181.5

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----E-EEEecCCCceeeEEEeC---CceEEEEecCCcEEEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----L-RLKYAHSDPVLDCCFQD---AVHSFSGGLDCTLKMF   83 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~-~~~~~h~~~v~~~~~~~---~~~~~sgs~Dg~i~vw   83 (327)
                      ..|.+.|++++|+|+ +.+|++++.|+.|++||+.++.    . .....|..+|.+++|++   +..+++|+.|++|++|
T Consensus         8 ~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw   86 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW   86 (351)
T ss_dssp             CCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             cccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence            457889999999995 5799999999999999998752    2 33447999999999963   8899999999999999


Q ss_pred             EcCCCc----------eeeeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCCceeeeee--------------C
Q psy11885         84 DFNTQT----------ETVIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSSRCVGNYT--------------Q  137 (327)
Q Consensus        84 d~~~~~----------~~~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~~~~~~~~--------------~  137 (327)
                      |++++.          ...+..|...|.+++|+|+  ++.+++++.|+.|++||+++++.+..+.              .
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH  166 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred             ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence            998753          2345679999999999999  9999999999999999999887654432              1


Q ss_pred             CC--cEEEEecC---CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCC
Q psy11885        138 PD--KVFTMSLC---GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG  212 (327)
Q Consensus       138 ~~--~~~~~~~~---~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  212 (327)
                      ..  ..+.+.+.   +..+++++.++.+.+|+.........                                       
T Consensus       167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------------------------------------  207 (351)
T 3f3f_A          167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA---------------------------------------  207 (351)
T ss_dssp             SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE---------------------------------------
T ss_pred             ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee---------------------------------------
Confidence            11  23344443   77899999999987777654321000                                       


Q ss_pred             cccccceeeeeeeeeccCCeeeEEEeeEEEEecCC----CeEEEecCCCeEEEEeCCCc---------------------
Q psy11885        213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY----NTFATGGSDGYVNIWDGFNK---------------------  267 (327)
Q Consensus       213 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~----~~lasgs~dg~i~iWd~~~~---------------------  267 (327)
                             ..+..|.         .+|.+++|+|++    ++|++|+.||.|++||+.++                     
T Consensus       208 -------~~~~~h~---------~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  271 (351)
T 3f3f_A          208 -------AKLPGHK---------SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSAD  271 (351)
T ss_dssp             -------EECCCCC---------SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------
T ss_pred             -------eecCCCC---------cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcc
Confidence                   0000111         147788888887    78888888888888887654                     


Q ss_pred             -------------------------eeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        268 -------------------------KRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       268 -------------------------~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                                               +.+..+.+|...|++++|+|+|++||+++.++....+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw  333 (351)
T 3f3f_A          272 VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW  333 (351)
T ss_dssp             -------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             cccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence                                     5566778898999999999999999999866544443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.1e-32  Score=242.79  Aligned_cols=239  Identities=19%  Similarity=0.201  Sum_probs=174.3

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-----EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcC
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-----LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      .|++.|++++|+|+ + .+++++.||+|+|||+.+++..     ...+|...|.+++|+ ++.++++|+.|++|++||++
T Consensus        92 ~~~~~V~~~~~s~d-~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~  169 (357)
T 4g56_B           92 QTEAGVTDVAWVSE-K-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS  169 (357)
T ss_dssp             ECSSCEEEEEEETT-T-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             CCCCCEEEEEEcCC-C-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            46778999999995 3 4667888999999999887632     233689999999995 78899999999999999999


Q ss_pred             CCcee-eeecCCccEEEEEEeCCCC-EEEEEECCCeEEEEeCCCCceeeeeeC---CCcEEE--EecC-CCeEEEEeCCC
Q psy11885         87 TQTET-VIGTHDQPIRAVEYSDEVN-CILTGSWDTSVKMWDPRSSRCVGNYTQ---PDKVFT--MSLC-GEKFVVGTAGR  158 (327)
Q Consensus        87 ~~~~~-~~~~h~~~V~~l~~~~~~~-~l~sgs~d~~i~lwdl~~~~~~~~~~~---~~~~~~--~~~~-~~~~~~~~~d~  158 (327)
                      ++... .+..|...|.+++|++++. .+++++.|++|++||++++++...+..   ...+.+  +++. +..+++++.|+
T Consensus       170 ~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~  249 (357)
T 4g56_B          170 QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG  249 (357)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred             CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence            87653 5678999999999999874 789999999999999999887665432   223444  4444 45688999999


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP  237 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  237 (327)
                      .|++||+++.+.+.....  ......+++++|++. .+++++.++.+.+|....+...     ....|.         .+
T Consensus       250 ~i~~wd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~-----~~~~H~---------~~  313 (357)
T 4g56_B          250 NVSLVNIKNPDSAQTSAV--HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF-----RDLSHR---------DF  313 (357)
T ss_dssp             CEEEEESSCGGGCEEECC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE-----EECCCS---------SC
T ss_pred             ceeEEECCCCcEeEEEec--cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe-----EECCCC---------CC
Confidence            999999998765433222  223457888888875 4566777888777544433211     111232         36


Q ss_pred             eeEEEEec-CCCeEEEecCCCeEEEEeCCCcee
Q psy11885        238 VNAISFHQ-EYNTFATGGSDGYVNIWDGFNKKR  269 (327)
Q Consensus       238 v~~v~~sp-d~~~lasgs~dg~i~iWd~~~~~~  269 (327)
                      |++++|+| ++++|||||.||+|++|++.+...
T Consensus       314 V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          314 VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            89999999 799999999999999999865433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.9e-31  Score=238.01  Aligned_cols=284  Identities=14%  Similarity=0.150  Sum_probs=211.0

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--------------cCCCceeeEEEe--CCceEEEE
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--------------AHSDPVLDCCFQ--DAVHSFSG   74 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------------~h~~~v~~~~~~--~~~~~~sg   74 (327)
                      ...|.+.|++++|+|.++.+|++++.||.|++||+.+++.....              .|...|.+++|+  ++..++++
T Consensus        39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  118 (408)
T 4a11_B           39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS  118 (408)
T ss_dssp             CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred             eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence            34588999999999933579999999999999999876532221              388999999995  56689999


Q ss_pred             ecCCcEEEEEcCCCceeeeecCCccEEEEEEeCC---CCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEE--EEecCC
Q psy11885         75 GLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDE---VNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVF--TMSLCG  148 (327)
Q Consensus        75 s~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~--~~~~~~  148 (327)
                      +.|+.|++||+.++.......+...+.++.+++.   +..+++++.|+.|++||+++++++..+..+ ..+.  .+++.+
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~  198 (408)
T 4a11_B          119 SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY  198 (408)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred             eCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence            9999999999998876655567888999999884   459999999999999999999888777643 3344  455566


Q ss_pred             C-eEEEEeCCCeEEEEECCCCccceeeec--------------ccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCc
Q psy11885        149 E-KFVVGTAGRKVCIWDLRNMGYIMQRRE--------------SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP  213 (327)
Q Consensus       149 ~-~~~~~~~d~~v~iwD~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  213 (327)
                      . .+++++.|+.|++||+++.........              ........+++++|++..+++++.++.+.+|......
T Consensus       199 ~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence            6 488999999999999987642211110              1122345788899988888999989988886665443


Q ss_pred             ccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEE
Q psy11885        214 EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA  293 (327)
Q Consensus       214 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la  293 (327)
                      ......    .+......    ..+........+..+++++.|+.|++||+.+++.+..+.+|...|++++|+|+|++||
T Consensus       279 ~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  350 (408)
T 4a11_B          279 NTLVNY----GKVCNNSK----KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY  350 (408)
T ss_dssp             BCCCCC----CCCCCCCS----SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred             cceecc----cccccccc----ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE
Confidence            221111    00000000    0111222234456777788899999999999999999999999999999999999999


Q ss_pred             EEEcccccc
Q psy11885        294 IACSYNYEL  302 (327)
Q Consensus       294 ~~~~~~~~~  302 (327)
                      +++.++...
T Consensus       351 s~~~dg~i~  359 (408)
T 4a11_B          351 SGSRDCNIL  359 (408)
T ss_dssp             EEETTSCEE
T ss_pred             EECCCCeEE
Confidence            998765433

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.6e-33  Score=252.17  Aligned_cols=271  Identities=11%  Similarity=0.116  Sum_probs=199.5

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeE-EE-eCCceEEEEecCCcEEEEEcCCCceee-
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDC-CF-QDAVHSFSGGLDCTLKMFDFNTQTETV-   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~-~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~~-   92 (327)
                      ..+++++|+|+ +++|++++.|+.|++||..+++........ .+..+ .| +++..+++|+.|+.|++||++++.... 
T Consensus        57 ~~~~~~~~s~~-g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  134 (420)
T 3vl1_A           57 DAGKGNTFEKV-GSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI  134 (420)
T ss_dssp             BCCTTCEEEEE-ETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE
T ss_pred             ccccceeeeec-CCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee
Confidence            44568999996 578999999999999999887643332222 44444 45 478899999999999999998776644 


Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCCeEEEEeCCCeEEEEECCCCc
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMG  169 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~  169 (327)
                      +..|...|.+++|+|++++|++|+.|++|++||+++++++..+..+ ..+  +.+++++..+++++.|++|++||+++.+
T Consensus       135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            4689999999999999999999999999999999999888877643 333  4566778899999999999999999876


Q ss_pred             cceeeeccc-cee---------------------eeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee
Q psy11885        170 YIMQRRESS-LKF---------------------QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI  227 (327)
Q Consensus       170 ~~~~~~~~~-~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~  227 (327)
                      .+....... ...                     ...+++++|++..+++++.++.+.+|..........   ....|  
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~--  289 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ---LPSKF--  289 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE---ECCTT--
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE---ccccc--
Confidence            543322110 111                     112344556667778888888887765543321111   00111  


Q ss_pred             ccCCeeeEEEeeEEEEecCCC-eEEEecCCCeEEEEeCCCcee-eeecCc-CCcceEEEEECCCCCEEEEEEccccc
Q psy11885        228 KEDGIEKIYPVNAISFHQEYN-TFATGGSDGYVNIWDGFNKKR-LCQFHR-YDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       228 ~~~~~~~~~~v~~v~~spd~~-~lasgs~dg~i~iWd~~~~~~-~~~~~~-~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                             ..+|.+++|+|+++ +|++|+.||.|++||+.+++. +..+.. +..+|.++.| |++++|++++.++..
T Consensus       290 -------~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v  358 (420)
T 3vl1_A          290 -------TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSI  358 (420)
T ss_dssp             -------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEE
T ss_pred             -------CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccE
Confidence                   12588999999999 999999999999999988754 556655 4557888855 578899998765433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-32  Score=239.45  Aligned_cols=234  Identities=18%  Similarity=0.203  Sum_probs=181.2

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC--eE-EEEecCCCceeeEEEe-C--CceEEEEecCCcEEEEEc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN--NL-RLKYAHSDPVLDCCFQ-D--AVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~--~~-~~~~~h~~~v~~~~~~-~--~~~~~sgs~Dg~i~vwd~   85 (327)
                      ..|.+.|++++|+|+ +.+|++++.|+.|++||+..+  +. .....|..+|.+++|+ +  +.++++|+.|+.|++||+
T Consensus         8 ~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   86 (379)
T 3jrp_A            8 NAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE   86 (379)
T ss_dssp             EECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred             cCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence            347789999999995 579999999999999999844  33 3344699999999994 4  789999999999999999


Q ss_pred             CCCce---eeeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCCceee--eeeC-CCcE--EEEec---------
Q psy11885         86 NTQTE---TVIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSSRCVG--NYTQ-PDKV--FTMSL---------  146 (327)
Q Consensus        86 ~~~~~---~~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~~~~~--~~~~-~~~~--~~~~~---------  146 (327)
                      +++..   ..+..|...|.+++|+|+  ++.+++++.|+.|++||+++++...  .+.. ...+  ..+.+         
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  166 (379)
T 3jrp_A           87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH  166 (379)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred             CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence            98752   345679999999999999  9999999999999999998874332  2222 3334  34455         


Q ss_pred             ----CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeee
Q psy11885        147 ----CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF  222 (327)
Q Consensus       147 ----~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  222 (327)
                          ++..+++++.|+.|++||+++.....           ...                                 ..+
T Consensus       167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----------~~~---------------------------------~~~  202 (379)
T 3jrp_A          167 NGTKESRKFVTGGADNLVKIWKYNSDAQTY-----------VLE---------------------------------STL  202 (379)
T ss_dssp             ---CTTCEEEEEETTSCEEEEEEETTTTEE-----------EEE---------------------------------EEE
T ss_pred             cCCCCCCEEEEEeCCCeEEEEEecCCCcce-----------eeE---------------------------------EEE
Confidence                46789999999999999987532100           000                                 000


Q ss_pred             eeeeeccCCeeeEEEeeEEEEecC---CCeEEEecCCCeEEEEeCCCce-----eeeecCcCCcceEEEEECCCCCEEEE
Q psy11885        223 KCHRIKEDGIEKIYPVNAISFHQE---YNTFATGGSDGYVNIWDGFNKK-----RLCQFHRYDTGITSLCFSYDGNVLAI  294 (327)
Q Consensus       223 ~~h~~~~~~~~~~~~v~~v~~spd---~~~lasgs~dg~i~iWd~~~~~-----~~~~~~~~~~~v~~l~fspdg~~la~  294 (327)
                      ..|.         .+|.+++|+|+   +++|++++.||.|++||+.++.     .+.....+...|++++|+|+|++||+
T Consensus       203 ~~h~---------~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  273 (379)
T 3jrp_A          203 EGHS---------DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL  273 (379)
T ss_dssp             CCCS---------SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred             eccc---------CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEE
Confidence            1111         14789999999   8999999999999999998763     23333457788999999999999999


Q ss_pred             EEccc
Q psy11885        295 ACSYN  299 (327)
Q Consensus       295 ~~~~~  299 (327)
                      ++.++
T Consensus       274 ~~~dg  278 (379)
T 3jrp_A          274 SGGDN  278 (379)
T ss_dssp             EESSS
T ss_pred             ecCCC
Confidence            98654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.8e-31  Score=240.61  Aligned_cols=268  Identities=13%  Similarity=0.179  Sum_probs=198.8

Q ss_pred             eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe---cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee-e
Q psy11885         18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY---AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET-V   92 (327)
Q Consensus        18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~-~   92 (327)
                      .+.|+||+ + .+||+| .|++|+|||..++++....   .|...|.+++|+ ++.++++|+.|++|++||+++++.. .
T Consensus       108 ~~~l~wS~-~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          108 LNLVDWSS-G-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             CBCEEECT-T-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ceeEEECC-C-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            57899997 3 366654 5999999999999854433   477789999995 7899999999999999999987653 5


Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc-eeeeeeCCC---cEEEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR-CVGNYTQPD---KVFTMSLCGEKFVVGTAGRKVCIWDLRNM  168 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iwD~~~~  168 (327)
                      +.+|...+.++.++  +..+++|+.|+.+++||.+... .+..+..+.   ....+.+.+..+++++.|+.+++||.++.
T Consensus       185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            67899999988775  5799999999999999998754 344444432   23456677889999999999999999865


Q ss_pred             cccee--eecccceeeeEEeEEeeCCCceE-EEe--ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        169 GYIMQ--RRESSLKFQTRCIKCFPNKQGYV-LSS--IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       169 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      +....  ...........++++.|....++ +++  .++.+.+  |+.....  ....+..|          ..+.++.|
T Consensus       263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i--wd~~t~~--~~~~~~~~----------~~v~~~~~  328 (420)
T 4gga_A          263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI--WNVCSGA--CLSAVDAH----------SQVCSILW  328 (420)
T ss_dssp             SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE--EETTTTE--EEEEEECS----------SCEEEEEE
T ss_pred             cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE--EeCCccc--cceeeccc----------cceeeeee
Confidence            43211  11112223356777888765544 333  3455555  5443321  11111111          14778999


Q ss_pred             ecCCCeEEEec--CCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        244 HQEYNTFATGG--SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       244 spd~~~lasgs--~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      +|+++.|++++  .|+.|+|||+.+++.+..+.+|..+|++|+|||||++||+|+.|+....+
T Consensus       329 ~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW  391 (420)
T 4gga_A          329 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW  391 (420)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            99999988754  79999999999999999999999999999999999999999887655443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-31  Score=273.14  Aligned_cols=278  Identities=16%  Similarity=0.216  Sum_probs=218.9

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|++++|+|+ +.+|++|+.||+|++||+.+++.. ....|...|.+++|+ ++.++++|+.|++|++||+.++.
T Consensus       612 ~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~  690 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQD-GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK  690 (1249)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ecccccEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence            357889999999995 589999999999999999998854 445799999999995 78899999999999999999876


Q ss_pred             ee-eeecCCccEEEEEEeC--CCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-c--EEEEecCCCeEEEEeCCCeEEEE
Q psy11885         90 ET-VIGTHDQPIRAVEYSD--EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-K--VFTMSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        90 ~~-~~~~h~~~V~~l~~~~--~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~d~~v~iw  163 (327)
                      .. .+..|...|.+++|++  ++..+++|+.|+.|++||+++++++..+..+. .  ...+++++..+++++.|+.|++|
T Consensus       691 ~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vw  770 (1249)
T 3sfz_A          691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW  770 (1249)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEE
T ss_pred             eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEE
Confidence            53 5678999999999999  55689999999999999999999888776533 3  34567778899999999999999


Q ss_pred             ECCCCccceeeecc-----------cceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCe
Q psy11885        164 DLRNMGYIMQRRES-----------SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI  232 (327)
Q Consensus       164 D~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~  232 (327)
                      |+++.+........           .......++++++++..+++++ ++.+.++..........   ....|       
T Consensus       771 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~---~~~~~-------  839 (1249)
T 3sfz_A          771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAE---IHTGH-------  839 (1249)
T ss_dssp             EGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEE---EECSS-------
T ss_pred             eCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeE---EcCCC-------
Confidence            99876533221110           0111245667778777666654 66666654443321111   11111       


Q ss_pred             eeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccC
Q psy11885        233 EKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELE  303 (327)
Q Consensus       233 ~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~  303 (327)
                        ..++.+++|+|+++.+++|+.||.|++||..+++.+..+.+|...|++++|+|+|++|++++.++....
T Consensus       840 --~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~v  908 (1249)
T 3sfz_A          840 --HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV  908 (1249)
T ss_dssp             --SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             --CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEE
Confidence              125889999999999999999999999999999999999999999999999999999999987654443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-30  Score=238.01  Aligned_cols=280  Identities=18%  Similarity=0.294  Sum_probs=215.6

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      ..|.+.|++++|++   .++++|+.|++|++||+.+++... ...|...|.++.+. +..+++|+.|++|++||++++..
T Consensus       156 ~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~  231 (445)
T 2ovr_B          156 VGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQC  231 (445)
T ss_dssp             CCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCE
T ss_pred             cCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCCcE
Confidence            45788999999984   489999999999999999988544 44699999999885 56799999999999999988765


Q ss_pred             -eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-CCcEEEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885         91 -TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNM  168 (327)
Q Consensus        91 -~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~  168 (327)
                       ..+..|..+|.++.+  +++.+++|+.|+.|++||+++++++..+.. ...+.++.+++..+++++.|+.|++||+++.
T Consensus       232 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~  309 (445)
T 2ovr_B          232 LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG  309 (445)
T ss_dssp             EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCC
Confidence             356789999999998  678999999999999999999998888764 3457778888999999999999999999987


Q ss_pred             ccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC
Q psy11885        169 GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN  248 (327)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~  248 (327)
                      +.+.....+  .....+  +.++++.+++++.++.+.+|....+...    ..+..+.      .+..+|.+++|+  ++
T Consensus       310 ~~~~~~~~~--~~~v~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~------~~~~~v~~~~~~--~~  373 (445)
T 2ovr_B          310 NCIHTLTGH--QSLTSG--MELKDNILVSGNADSTVKIWDIKTGQCL----QTLQGPN------KHQSAVTCLQFN--KN  373 (445)
T ss_dssp             CEEEEECCC--CSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEE----EEECSTT------SCSSCEEEEEEC--SS
T ss_pred             CEEEEEcCC--cccEEE--EEEeCCEEEEEeCCCeEEEEECCCCcEE----EEEccCC------CCCCCEEEEEEC--CC
Confidence            654322211  112233  3345667788888888888665443221    1111110      112358888885  57


Q ss_pred             eEEEecCCCeEEEEeCCCceeeeec-----CcCCcceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEEEcccc
Q psy11885        249 TFATGGSDGYVNIWDGFNKKRLCQF-----HRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTDQ  322 (327)
Q Consensus       249 ~lasgs~dg~i~iWd~~~~~~~~~~-----~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (327)
                      +|++|+.||.|++||+.+++.+..+     ..+...|++++|+|+|.+||+|+.++.         +...++++....+
T Consensus       374 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~---------~~~~l~v~df~~~  443 (445)
T 2ovr_B          374 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT---------EETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS---------SCCEEEEEECCCC
T ss_pred             EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC---------CccEEEEEECCCC
Confidence            9999999999999999999888776     466778999999999999999986654         2334666655543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-33  Score=256.20  Aligned_cols=278  Identities=11%  Similarity=0.032  Sum_probs=194.8

Q ss_pred             CCCCeeEEEEecC-----CCcEEEEEECCCcEEEEECCCCeE------------EEEecCCCceeeEEEeCCceEEEEec
Q psy11885         14 PEDGITAVKFAPN-----SNQFLLASSWDCNVSLYDITNNNL------------RLKYAHSDPVLDCCFQDAVHSFSGGL   76 (327)
Q Consensus        14 ~~~~I~~i~fs~~-----~~~~l~s~~~d~~i~iwd~~~~~~------------~~~~~h~~~v~~~~~~~~~~~~sgs~   76 (327)
                      |.+.|++++|+|+     ++.+||+++.|++|+|||+..++.            .....|...|.+++|+++..+++|+.
T Consensus       206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~  285 (524)
T 2j04_B          206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFK  285 (524)
T ss_dssp             CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEET
T ss_pred             cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeC
Confidence            4578999999995     146999999999999999976531            13346889999999976678999999


Q ss_pred             CCcEEEEEcCCCc-e-eeeecCCccEEEE--EEeCCC-CEEEEEECCCeEEEEeCCCCceeeeeeCC-----CcEEEEec
Q psy11885         77 DCTLKMFDFNTQT-E-TVIGTHDQPIRAV--EYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNYTQP-----DKVFTMSL  146 (327)
Q Consensus        77 Dg~i~vwd~~~~~-~-~~~~~h~~~V~~l--~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-----~~~~~~~~  146 (327)
                      ||+|++||++++. . ..+..|..+|.+|  +|++++ ++|+||+.|++|++||++++++...+..+     ....++++
T Consensus       286 DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp  365 (524)
T 2j04_B          286 NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP  365 (524)
T ss_dssp             TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred             CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence            9999999998653 2 3467899999999  567887 89999999999999999988776554321     23467788


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeee
Q psy11885        147 CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR  226 (327)
Q Consensus       147 ~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~  226 (327)
                      ++..+++++.|++|++||+++.........  +.....+++++|+++.+++++.++.+.+  |+.....   ...++.+.
T Consensus       366 ~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~l--wd~~~~~---~~~~~~~~  438 (524)
T 2j04_B          366 QIYSYIYSDGASSLRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLII--TNAARRL---LHGIKNSS  438 (524)
T ss_dssp             TTTEEEEECSSSEEEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEEC--CBSCSST---TTCC----
T ss_pred             CcCeEEEeCCCCcEEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEE--EechHhh---ccccccCc
Confidence            888999999999999999998654322222  2234678899999999999999988777  4432211   10000000


Q ss_pred             eccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC-CceeeeecCcCCcceEEEEECCCCC---EEEEEEcccccc
Q psy11885        227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF-NKKRLCQFHRYDTGITSLCFSYDGN---VLAIACSYNYEL  302 (327)
Q Consensus       227 ~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~-~~~~~~~~~~~~~~v~~l~fspdg~---~la~~~~~~~~~  302 (327)
                          ...+...+.+++|+|+++.+. ...+  +++|+.. ++..+..+.+|..+|++|+|||+++   .||+|+.++...
T Consensus       439 ----~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vr  511 (524)
T 2j04_B          439 ----ATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLT  511 (524)
T ss_dssp             ------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEE
T ss_pred             ----cceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEE
Confidence                000111467899999998653 2222  3344432 4666778889999999999999964   899887666555


Q ss_pred             CCC
Q psy11885        303 ETP  305 (327)
Q Consensus       303 ~~~  305 (327)
                      .+.
T Consensus       512 lw~  514 (524)
T 2j04_B          512 LEY  514 (524)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-31  Score=263.36  Aligned_cols=156  Identities=9%  Similarity=0.135  Sum_probs=131.6

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~   91 (327)
                      .|...|++++|+| + ++|++++.|++|++||+.++++...+.|...|.+++|+ ++.++++|+.||+|++||++++...
T Consensus        56 ~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~  133 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS  133 (902)
T ss_dssp             SSCCCEEEEEEET-T-TEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence            4677999999999 4 59999999999999999998876666788899999995 7889999999999999999877542


Q ss_pred             ------------eeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeeeCC-------------------C
Q psy11885         92 ------------VIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYTQP-------------------D  139 (327)
Q Consensus        92 ------------~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-------------------~  139 (327)
                                  .+.+|..+|.+++|+|+ +..+++|+.|++| +||+++++++..+..+                   .
T Consensus       134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~  212 (902)
T 2oaj_A          134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP  212 (902)
T ss_dssp             EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred             cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence                        12468899999999996 5789999999999 9999999887776533                   2


Q ss_pred             cE--EEEecCCCeEEEEeCCCeEEEEECCCCccc
Q psy11885        140 KV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus       140 ~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      .+  .++++++..|++++.|++|++||+++++.+
T Consensus       213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            34  456677889999999999999999876543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=9.4e-31  Score=247.22  Aligned_cols=285  Identities=14%  Similarity=0.131  Sum_probs=207.1

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE-ecCCC---ceeeEEEe-C-CceEEEEecCCcEEEEEc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK-YAHSD---PVLDCCFQ-D-AVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~h~~---~v~~~~~~-~-~~~~~sgs~Dg~i~vwd~   85 (327)
                      ..|.+.|++++|+|++..++++++.|+.|++||..+++.... ..|..   .|.+++|+ + +.++++++.|+.|++||+
T Consensus       157 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~  236 (615)
T 1pgu_A          157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG  236 (615)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred             ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence            457789999999997545899999999999999999886544 45888   89999995 6 789999999999999999


Q ss_pred             CCCceee-e-e---cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-----CcEEEEe-cCCCeEEEE
Q psy11885         86 NTQTETV-I-G---THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-----DKVFTMS-LCGEKFVVG  154 (327)
Q Consensus        86 ~~~~~~~-~-~---~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~  154 (327)
                      .+++... + .   .|..+|.+++|+ +++.|++++.|+.|++||+++++++..+..+     ..+..+. +++..++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  315 (615)
T 1pgu_A          237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL  315 (615)
T ss_dssp             TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEE
T ss_pred             CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEE
Confidence            8877643 4 4   899999999999 9999999999999999999999988877654     2333333 268889999


Q ss_pred             eCCCeEEEEECCCCccceeeeccc-------------------------------ceeeeEEeEEeeCCCceEEEeecCe
Q psy11885        155 TAGRKVCIWDLRNMGYIMQRRESS-------------------------------LKFQTRCIKCFPNKQGYVLSSIEGR  203 (327)
Q Consensus       155 ~~d~~v~iwD~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  203 (327)
                      +.|+.|++||+++.+.+.....+.                               ......++.+ +++..+++++.++.
T Consensus       316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~  394 (615)
T 1pgu_A          316 SLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDT  394 (615)
T ss_dssp             ETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTE
T ss_pred             ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCC
Confidence            999999999998654322211110                               0111223333 33445555555554


Q ss_pred             EEEEEccCCccc------------------------------------c-------------------------cce--e
Q psy11885        204 AAVEYLDTGPEM------------------------------------Q-------------------------KMK--Y  220 (327)
Q Consensus       204 ~~i~~~~~~~~~------------------------------------~-------------------------~~~--~  220 (327)
                      +.+  |+.....                                    .                         ...  +
T Consensus       395 i~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~  472 (615)
T 1pgu_A          395 LKV--NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVF  472 (615)
T ss_dssp             EEE--TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEE
T ss_pred             EEE--EEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEE
Confidence            443  2211000                                    0                         000  0


Q ss_pred             eeeeeeec-cCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc-CCcceEEEEECC----------C
Q psy11885        221 AFKCHRIK-EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-YDTGITSLCFSY----------D  288 (327)
Q Consensus       221 ~~~~h~~~-~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~-~~~~v~~l~fsp----------d  288 (327)
                      ........ ..-..+..+|.+++|+|++++|++|+.||.|++||+.+++.+..+.+ |...|++++|||          +
T Consensus       473 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~  552 (615)
T 1pgu_A          473 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE  552 (615)
T ss_dssp             ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred             ECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccC
Confidence            00000000 00011233688999999999999999999999999999999988887 888999999999          9


Q ss_pred             CCEEEEEEcccc
Q psy11885        289 GNVLAIACSYNY  300 (327)
Q Consensus       289 g~~la~~~~~~~  300 (327)
                      +++||+++.++.
T Consensus       553 ~~~l~~~~~dg~  564 (615)
T 1pgu_A          553 EDLVATGSLDTN  564 (615)
T ss_dssp             CCEEEEEETTSC
T ss_pred             CCEEEEEcCCCc
Confidence            999999987643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.9e-31  Score=235.79  Aligned_cols=263  Identities=15%  Similarity=0.218  Sum_probs=197.7

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-ee
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-TV   92 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-~~   92 (327)
                      .+++++|++   ..+++++.|+.|++||+.+++.....  .|...|.+++|+ ++.++++|+.||.|++||++++.. ..
T Consensus        95 ~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  171 (401)
T 4aez_A           95 YLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT  171 (401)
T ss_dssp             TCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             eEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE
Confidence            355677775   24777889999999999998854433  378899999995 788999999999999999988765 45


Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC-CceeeeeeCC-CcE--EEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS-SRCVGNYTQP-DKV--FTMSLCGEKFVVGTAGRKVCIWDLRNM  168 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~  168 (327)
                      +..|...|.+++|+  ++.+++|+.|+.|++||++. +..+..+..+ ..+  +.+++++..+++++.|+.|++||+++.
T Consensus       172 ~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  249 (401)
T 4aez_A          172 MAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS  249 (401)
T ss_dssp             ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS
T ss_pred             ecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC
Confidence            67899999999994  57999999999999999984 4555555543 333  456667889999999999999999986


Q ss_pred             ccceeeecccceeeeEEeEEeeCCCceEEEe---ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        169 GYIMQRRESSLKFQTRCIKCFPNKQGYVLSS---IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      +.......  ......+++++|++..+++.+   .++.+.+|....+...    ..+. +         ..++.+++|+|
T Consensus       250 ~~~~~~~~--~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~-~---------~~~v~~~~~s~  313 (401)
T 4aez_A          250 IPKFTKTN--HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVD-A---------GSQVTSLIWSP  313 (401)
T ss_dssp             SEEEEECC--CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEE-C---------SSCEEEEEECS
T ss_pred             CccEEecC--CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEe-C---------CCcEEEEEECC
Confidence            54432221  223456788888776555543   3666666544433211    1111 1         12588999999


Q ss_pred             CCCeEEE--ecCCCeEEEEeCCCceeee--ecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        246 EYNTFAT--GGSDGYVNIWDGFNKKRLC--QFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       246 d~~~las--gs~dg~i~iWd~~~~~~~~--~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      +++.|++  |+.||.|++||+.+++...  .+.+|...|.+++|+|||++||+++.++.
T Consensus       314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~  372 (401)
T 4aez_A          314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN  372 (401)
T ss_dssp             SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred             CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            9999998  6689999999998865443  45688889999999999999999986543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-31  Score=234.06  Aligned_cols=243  Identities=20%  Similarity=0.300  Sum_probs=168.9

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC-------CeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEE
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN-------NNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~-------~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vw   83 (327)
                      .|.+.|++++|+|+ +.+|++++.|++|+|||+..       .+. ....+|...|.+++|+ ++.++++|+.|++|++|
T Consensus        56 ~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iw  134 (330)
T 2hes_X           56 AHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIW  134 (330)
T ss_dssp             CCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             CccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            38889999999995 57999999999999999853       222 3345799999999995 78899999999999999


Q ss_pred             EcCCC-c----eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC--ceeeeeeCC-CcEEEE--ecC--CCeE
Q psy11885         84 DFNTQ-T----ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS--RCVGNYTQP-DKVFTM--SLC--GEKF  151 (327)
Q Consensus        84 d~~~~-~----~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~--~~~~~~~~~-~~~~~~--~~~--~~~~  151 (327)
                      |++.. .    ...+..|...|.+++|+|++++|++|+.|++|++||++++  +++..+..+ ..+.++  ++.  +..+
T Consensus       135 d~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  214 (330)
T 2hes_X          135 ETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL  214 (330)
T ss_dssp             ECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred             eccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence            99532 1    1346789999999999999999999999999999998776  566666543 345444  444  4579


Q ss_pred             EEEeCCCeEEEEECCCCcc-------ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee
Q psy11885        152 VVGTAGRKVCIWDLRNMGY-------IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC  224 (327)
Q Consensus       152 ~~~~~d~~v~iwD~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  224 (327)
                      ++++.|++|++||++....       ..............++++.+. ..+++++.++.+.+|....+.. .........
T Consensus       215 ~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~l~s~~~dg~v~iw~~~~~~~-~~~~~~~~~  292 (330)
T 2hes_X          215 CSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GLIASVGADGVLAVYEEVDGEW-KVFAKRALC  292 (330)
T ss_dssp             EEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-SCEEEEETTSCEEEEEEETTEE-EEEEEESCT
T ss_pred             EEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-CEEEEEeCCCEEEEEEcCCCce-EEEeccccc
Confidence            9999999999999875321       001111112234566777744 4677788888888865443210 001111111


Q ss_pred             eeeccCCeeeEEEeeEEEEec--CCCeEEEecCCCeEEEEeCCC
Q psy11885        225 HRIKEDGIEKIYPVNAISFHQ--EYNTFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       225 h~~~~~~~~~~~~v~~v~~sp--d~~~lasgs~dg~i~iWd~~~  266 (327)
                      |..        ..|++++|+|  ++++||+||.||+|+|||+.+
T Consensus       293 h~~--------~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          293 HGV--------YEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTT--------SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccc--------ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            211        1488999999  789999999999999999764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-32  Score=255.66  Aligned_cols=265  Identities=10%  Similarity=0.074  Sum_probs=183.6

Q ss_pred             CCCeeEEEEecCC-C-------cEEEE-------------------EECCCcEEEEECCCCeEE----E-EecCCCceee
Q psy11885         15 EDGITAVKFAPNS-N-------QFLLA-------------------SSWDCNVSLYDITNNNLR----L-KYAHSDPVLD   62 (327)
Q Consensus        15 ~~~I~~i~fs~~~-~-------~~l~s-------------------~~~d~~i~iwd~~~~~~~----~-~~~h~~~v~~   62 (327)
                      .+.|.+|+|+|++ +       ++||+                   ++.|++|+|||+.++++.    . ...|.+.|.+
T Consensus       133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~  212 (524)
T 2j04_B          133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD  212 (524)
T ss_dssp             CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEE
T ss_pred             CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEE
Confidence            4678899999863 1       56665                   457889999999876531    2 3356788999


Q ss_pred             EEEeC-------CceEEEEecCCcEEEEEcCCCce------------eeeecCCccEEEEEEeCCCCEEEEEECCCeEEE
Q psy11885         63 CCFQD-------AVHSFSGGLDCTLKMFDFNTQTE------------TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKM  123 (327)
Q Consensus        63 ~~~~~-------~~~~~sgs~Dg~i~vwd~~~~~~------------~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~l  123 (327)
                      ++|++       +..++||+.||+|++||+..+..            ..+.+|...|.+++|+++ ..|++|+.||+|++
T Consensus       213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~l  291 (524)
T 2j04_B          213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAE  291 (524)
T ss_dssp             EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEE
T ss_pred             EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEE
Confidence            99964       36899999999999999976531            145678999999999986 48999999999999


Q ss_pred             EeCCCCc-eeeeeeCC-CcEEEE----ecCC-CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceE
Q psy11885        124 WDPRSSR-CVGNYTQP-DKVFTM----SLCG-EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYV  196 (327)
Q Consensus       124 wdl~~~~-~~~~~~~~-~~~~~~----~~~~-~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (327)
                      ||+++++ +...+..+ ..+.++    .+++ ..|++++.|++|+|||+++.+.......+.......+++++|+++.++
T Consensus       292 WD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~  371 (524)
T 2j04_B          292 FDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYI  371 (524)
T ss_dssp             EETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEE
T ss_pred             EECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEE
Confidence            9998764 33444433 345544    3345 679999999999999998765432211111001135678999888888


Q ss_pred             EEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcC
Q psy11885        197 LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY  276 (327)
Q Consensus       197 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~  276 (327)
                      +++.++.+.+|......    ....+..|.         .+|++++|||++++||+||.||+|++||...+ .+......
T Consensus       372 s~~~d~tv~lwd~~~~~----~~~~l~gH~---------~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~  437 (524)
T 2j04_B          372 YSDGASSLRAVPSRAAF----AVHPLVSRE---------TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNS  437 (524)
T ss_dssp             EECSSSEEEEEETTCTT----CCEEEEECS---------SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC---
T ss_pred             EeCCCCcEEEEECcccc----cceeeecCC---------CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccC
Confidence            88877777664433221    112233333         36899999999999999999999999997643 22222111


Q ss_pred             -----CcceEEEEECCCCCEEEE
Q psy11885        277 -----DTGITSLCFSYDGNVLAI  294 (327)
Q Consensus       277 -----~~~v~~l~fspdg~~la~  294 (327)
                           ...+++++|||+|+.+..
T Consensus       438 ~~~~~~~~v~~v~~sp~g~~~~~  460 (524)
T 2j04_B          438 SATQKSLRLWKWDYSIKDDKYRI  460 (524)
T ss_dssp             ---CCCCEEEECBCCSSSCEEEE
T ss_pred             ccceeeeEEEEeccCCCCCeEEc
Confidence                 115789999999997643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.3e-31  Score=236.90  Aligned_cols=245  Identities=13%  Similarity=0.187  Sum_probs=186.4

Q ss_pred             CCCCeeEEEEecCC---CcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCC
Q psy11885         14 PEDGITAVKFAPNS---NQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        14 ~~~~I~~i~fs~~~---~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      |.+.|++++|+|+.   +.+|++++.|+.|++||+.+++... ...|..+|.+++|+  ++..+++|+.|+.|++||+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            66889999999963   3689999999999999999888544 44699999999995  678899999999999999988


Q ss_pred             Cceee-e---ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee---------------------------
Q psy11885         88 QTETV-I---GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT---------------------------  136 (327)
Q Consensus        88 ~~~~~-~---~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~---------------------------  136 (327)
                      +.... +   ..|...|.+++|+|+++.|++++.|+.|++||+++++....+.                           
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            76543 3   5799999999999999999999999999999999876543322                           


Q ss_pred             --CCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeee------------cccceeeeEEeEEeeC--CCceEEEee
Q psy11885        137 --QPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRR------------ESSLKFQTRCIKCFPN--KQGYVLSSI  200 (327)
Q Consensus       137 --~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~~~~~  200 (327)
                        ....+.++.++++.+++++.|+.|++||+++........            .........++++.++  +..+++++.
T Consensus       228 ~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~  307 (366)
T 3k26_A          228 DIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ  307 (366)
T ss_dssp             SSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred             cCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence              233445555558899999999999999998764311100            0011112345677888  778888888


Q ss_pred             cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885        201 EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       201 ~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~  265 (327)
                      ++.+.+|..............+..|.       +..+|.+++|+|++++|++|+.||.|++||+.
T Consensus       308 dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          308 VGKLYVWDLEVEDPHKAKCTTLTHHK-------CGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TSCEEEEECCSSSGGGCEEEEECCTT-------CCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCcEEEEECCCCCCccccceEEcccc-------cCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            88888866655443322222233221       11368999999999999999999999999975

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.4e-31  Score=236.25  Aligned_cols=237  Identities=23%  Similarity=0.328  Sum_probs=179.7

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI   93 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~   93 (327)
                      ..|++++|+|+ +++|++|+.|++|++||+.+++.. ...+|...|.+++|+ ++..+++|+.|++|++||++++.....
T Consensus       124 ~~v~~v~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~  202 (393)
T 1erj_A          124 LYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT  202 (393)
T ss_dssp             CBEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eeEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE
Confidence            35999999995 579999999999999999998854 445799999999995 788999999999999999998876554


Q ss_pred             ecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeee--------CCCcE--EEEecCCCeEEEEeCCCeEEE
Q psy11885         94 GTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYT--------QPDKV--FTMSLCGEKFVVGTAGRKVCI  162 (327)
Q Consensus        94 ~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~~d~~v~i  162 (327)
                      ..+...+.+++++| ++++|++|+.|++|++||+++++++..+.        +...+  +.+++++..+++++.|++|++
T Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~  282 (393)
T 1erj_A          203 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL  282 (393)
T ss_dssp             EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            55677899999998 89999999999999999999988776652        12234  455667889999999999999


Q ss_pred             EECCCCccceee----------ecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCe
Q psy11885        163 WDLRNMGYIMQR----------RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI  232 (327)
Q Consensus       163 wD~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~  232 (327)
                      ||+++.......          ..........++++.+++..+++++.++.+.+|....+..    ...+..|.      
T Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~----~~~l~~h~------  352 (393)
T 1erj_A          283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP----LLMLQGHR------  352 (393)
T ss_dssp             EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE----EEEEECCS------
T ss_pred             EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE----EEEECCCC------
Confidence            999864321100          0001112245677888888888888888887765544322    22333343      


Q ss_pred             eeEEEeeEEEEec------CCCeEEEecCCCeEEEEeCCC
Q psy11885        233 EKIYPVNAISFHQ------EYNTFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       233 ~~~~~v~~v~~sp------d~~~lasgs~dg~i~iWd~~~  266 (327)
                         ..|.+++|+|      ++++|||||.||+|+||++.+
T Consensus       353 ---~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          353 ---NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ---SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             ---CCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence               2578888875      688999999999999999754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-30  Score=237.25  Aligned_cols=263  Identities=19%  Similarity=0.295  Sum_probs=205.3

Q ss_pred             CCCC-eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCcee
Q psy11885         14 PEDG-ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        14 ~~~~-I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~   91 (327)
                      |.+. +++++|++   .+|++|+.||+|++||+.+++... ..+|..+|.+++|+++..+++|+.||+|++||++++...
T Consensus       120 h~~~v~~~~~~~~---~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~  196 (464)
T 3v7d_B          120 HMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT  196 (464)
T ss_dssp             CSSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCCcEEEEEECC---CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEE
Confidence            4444 67888763   589999999999999999998654 446999999999986669999999999999999987653


Q ss_pred             -eeecCCccEEEEEEe--CCCCEEEEEECCCeEEEEeCCCCceee-----------------------eeeC-CCcEEEE
Q psy11885         92 -VIGTHDQPIRAVEYS--DEVNCILTGSWDTSVKMWDPRSSRCVG-----------------------NYTQ-PDKVFTM  144 (327)
Q Consensus        92 -~~~~h~~~V~~l~~~--~~~~~l~sgs~d~~i~lwdl~~~~~~~-----------------------~~~~-~~~~~~~  144 (327)
                       .+..|...|.+++|+  ++++.+++|+.|++|++||+++++...                       .+.. ...+.++
T Consensus       197 ~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  276 (464)
T 3v7d_B          197 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV  276 (464)
T ss_dssp             EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE
T ss_pred             EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE
Confidence             566799999999998  577899999999999999998765322                       2222 2346677


Q ss_pred             ecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee
Q psy11885        145 SLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC  224 (327)
Q Consensus       145 ~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  224 (327)
                      .++++.+++++.|+.|++||+++.+.+.....  ......++.+.++++.+++++.++.+.+|....+..    ...+..
T Consensus       277 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~----~~~~~~  350 (464)
T 3v7d_B          277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG--HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL----MYTLQG  350 (464)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE----EEEECC
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE----EEEEeC
Confidence            88899999999999999999998765433222  223457788899888899999999988866554332    222223


Q ss_pred             eeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       225 h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      |.         .+|.+++|+  +++|++|+.||+|++||+.+++...... +...+..++|+|++++|++|+.
T Consensus       351 h~---------~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d  411 (464)
T 3v7d_B          351 HT---------ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSE  411 (464)
T ss_dssp             CS---------SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEET
T ss_pred             CC---------CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEecC
Confidence            32         257888887  5799999999999999999877665553 4556788999999999999873

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.5e-32  Score=242.71  Aligned_cols=246  Identities=17%  Similarity=0.231  Sum_probs=185.7

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--------EEEEecCCCceeeEEEe--CCceEEEEecCCcEEE
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--------LRLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKM   82 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~v   82 (327)
                      .|...|.+++|+|+ +++|++|+.|+.|++||+.+..        .....+|.+.+.++.|.  .+..+++|+.|++|++
T Consensus       106 ~h~~~v~~~~~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~  184 (380)
T 3iz6_a          106 LHCPWVMECAFAPN-GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVL  184 (380)
T ss_dssp             CCCTTCCCCEECTT-SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEE
T ss_pred             cCCCCEEEEEECCC-CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEE
Confidence            46678999999995 5899999999999999986532        12345788999999985  3567999999999999


Q ss_pred             EEcCCCceee-e-----ecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCC-CceeeeeeCC---CcEEEEecCCCeE
Q psy11885         83 FDFNTQTETV-I-----GTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRS-SRCVGNYTQP---DKVFTMSLCGEKF  151 (327)
Q Consensus        83 wd~~~~~~~~-~-----~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~-~~~~~~~~~~---~~~~~~~~~~~~~  151 (327)
                      ||+.++.... +     .+|...|.++++++ +++.|++|+.|++|++||++. ++++..+..+   ...+.+++++..+
T Consensus       185 wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l  264 (380)
T 3iz6_a          185 WDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRF  264 (380)
T ss_dssp             ECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEE
T ss_pred             EEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeE
Confidence            9999876532 2     46889999999976 889999999999999999984 4666665543   3346677788999


Q ss_pred             EEEeCCCeEEEEECCCCccceeeeccc-----ceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeee
Q psy11885        152 VVGTAGRKVCIWDLRNMGYIMQRRESS-----LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR  226 (327)
Q Consensus       152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~  226 (327)
                      ++++.|++|++||+++++.+.......     ......+++++|++..+++++.++.+.+|................   
T Consensus       265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~---  341 (380)
T 3iz6_a          265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN---  341 (380)
T ss_dssp             EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCS---
T ss_pred             EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccC---
Confidence            999999999999999875432211110     011246788999999899998888888755443322111100001   


Q ss_pred             eccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCce
Q psy11885        227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK  268 (327)
Q Consensus       227 ~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~  268 (327)
                            .|...|.+++|+|++++|+|||.|++|+||++...+
T Consensus       342 ------~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          342 ------SHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             ------SCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             ------CCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence                  223468999999999999999999999999987654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.6e-30  Score=236.64  Aligned_cols=265  Identities=17%  Similarity=0.274  Sum_probs=205.4

Q ss_pred             cCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCC
Q psy11885         10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        10 ~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      .+..+...|++++|.   +.+|++|+.||+|++||..+++... ..+|..+|.+++| ++..+++|+.||+|++||++++
T Consensus       128 ~~~~~~~~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~  203 (435)
T 1p22_A          128 CRSETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTG  203 (435)
T ss_dssp             CCCSSCCCEEEEECC---SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSC
T ss_pred             cccCCCCcEEEEEEC---CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCC
Confidence            345566789999883   4689999999999999999988544 4469999999998 7889999999999999999987


Q ss_pred             ce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee---eeeeC-CCcEEEEecCCCeEEEEeCCCeEEEE
Q psy11885         89 TE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV---GNYTQ-PDKVFTMSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        89 ~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~iw  163 (327)
                      .. ..+..|...|.+++|++  +.+++|+.|++|++||+++++..   ..+.. ...+.++.++++.+++++.|+.|++|
T Consensus       204 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw  281 (435)
T 1p22_A          204 EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW  281 (435)
T ss_dssp             CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred             cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence            65 35678999999999974  69999999999999999987654   33333 34567777889999999999999999


Q ss_pred             ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      |+++.+.+.....+.  ....++.+  ++..+++++.++.+.+|....+..    ...+..|.         .+|.+++|
T Consensus       282 d~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~---------~~v~~~~~  344 (435)
T 1p22_A          282 NTSTCEFVRTLNGHK--RGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC----LRVLEGHE---------ELVRCIRF  344 (435)
T ss_dssp             ETTTCCEEEEEECCS--SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE----EEEECCCS---------SCEEEEEC
T ss_pred             ECCcCcEEEEEcCCC--CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCE----EEEEeCCc---------CcEEEEEe
Confidence            999876543332221  22344444  456778888888888866554332    12222232         25788888


Q ss_pred             ecCCCeEEEecCCCeEEEEeCCCce---------eeeecCcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885        244 HQEYNTFATGGSDGYVNIWDGFNKK---------RLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd~~~~~---------~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                        ++.+|++|+.||+|++||+.+++         .+..+.+|..+|++++|  ++++|++++.++..
T Consensus       345 --~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i  407 (435)
T 1p22_A          345 --DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTI  407 (435)
T ss_dssp             --CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred             --cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEE
Confidence              78899999999999999987765         67778889999999999  78899999765443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.8e-30  Score=234.42  Aligned_cols=262  Identities=20%  Similarity=0.277  Sum_probs=200.3

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE-ecCCCceeeEEEe---CCceEEEEecCCcEEEEEcCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK-YAHSDPVLDCCFQ---DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~h~~~v~~~~~~---~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      ..|.+.|++++|+|+ + +|++|+.|++|++||+.+++.... ..|..+|.+++|.   ++..+++|+.|++|++||+++
T Consensus       159 ~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~  236 (464)
T 3v7d_B          159 SGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK  236 (464)
T ss_dssp             CCCSSCEEEEEECST-T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC
T ss_pred             eCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC
Confidence            458899999999985 3 899999999999999999986544 4699999999985   567899999999999999986


Q ss_pred             Cce------------------------eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE-
Q psy11885         88 QTE------------------------TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV-  141 (327)
Q Consensus        88 ~~~------------------------~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~-  141 (327)
                      ...                        ..+.+|...|.++  +++++.+++|+.|++|++||+++++++..+..+ ..+ 
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  314 (464)
T 3v7d_B          237 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY  314 (464)
T ss_dssp             CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEE
Confidence            542                        2345688888877  567899999999999999999999988887643 334 


Q ss_pred             -EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccccee
Q psy11885        142 -FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY  220 (327)
Q Consensus       142 -~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  220 (327)
                       ..+++++..+++++.|+.|++||+++++.+.....+  .....++.+.  +..+++++.++.+.+|.......  .   
T Consensus       315 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~--~---  385 (464)
T 3v7d_B          315 STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR--K---  385 (464)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE--E---
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce--e---
Confidence             456677889999999999999999987654332222  2233555554  56778888888887765543221  1   


Q ss_pred             eeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee-cCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        221 AFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       221 ~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~-~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                       ...+..        ..+..++|+|++++|++|+ ||.|++||+.+++.+.. +..+..+|++++|+  ++.++++++.
T Consensus       386 -~~~~~~--------~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~  452 (464)
T 3v7d_B          386 -FSYHHT--------NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEK  452 (464)
T ss_dssp             -EEEECT--------TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEE
T ss_pred             -eeecCC--------CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEe
Confidence             111110        1356789999999999998 89999999999998876 56777889999997  4566666543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-30  Score=226.56  Aligned_cols=240  Identities=19%  Similarity=0.317  Sum_probs=183.2

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|...|++++|+|+ +.+|++++.|+.|++||+.+++. .....|...|.+++|+ ++..+++|+.|++|++||++++.
T Consensus        62 ~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  140 (312)
T 4ery_A           62 SGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK  140 (312)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             ccCCCceEEEEEcCC-CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE
Confidence            457789999999995 57999999999999999998885 4455799999999995 78899999999999999998876


Q ss_pred             e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC----CcEEEEecCCCeEEEEeCCCeEEEEE
Q psy11885         90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP----DKVFTMSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      . ..+..|..+|.+++|+|+++.+++++.|+.|++||+++++++..+...    .....++++++.+++++.|+.|++||
T Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd  220 (312)
T 4ery_A          141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  220 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            5 456789999999999999999999999999999999998887765432    22356777888999999999999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEe-eCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCF-PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      +++.+.+.....+..........+. +++..+++++.++.+.+|......    ....+..|.         .+|.+++|
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~---------~~v~~~~~  287 (312)
T 4ery_A          221 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHT---------DVVISTAC  287 (312)
T ss_dssp             TTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC----EEEEECCCS---------SCEEEEEE
T ss_pred             CCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch----hhhhhhccC---------CcEEEEee
Confidence            9987643222111111111111223 344556777778887776554332    222233332         25889999


Q ss_pred             ecCCCeEEEec--CCCeEEEEeCC
Q psy11885        244 HQEYNTFATGG--SDGYVNIWDGF  265 (327)
Q Consensus       244 spd~~~lasgs--~dg~i~iWd~~  265 (327)
                      +|+++.|++++  .|++|++|+..
T Consensus       288 ~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          288 HPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CSSSSEEEEEECTTTCCEEEEECC
T ss_pred             cCcCCceEEEEccCCccEEEecCC
Confidence            99999999986  69999999853

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.9e-31  Score=228.90  Aligned_cols=268  Identities=14%  Similarity=0.199  Sum_probs=204.0

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-   90 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-   90 (327)
                      +.+.|.+++|+|+ +++++++..++.+.+|+..... ......|..+|.+++|+ ++..+++++ |+.|++||++++.. 
T Consensus         8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~   85 (337)
T 1gxr_A            8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK   85 (337)
T ss_dssp             EEEECCEEEECSS-SCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred             cCCceeEEEECCC-CCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence            4467999999996 5788877777777777655433 44556899999999995 677788888 99999999987542 


Q ss_pred             ---eeee--cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc--eeeeeeCC-CcE--EEEecCCCeEEEEeCCCeE
Q psy11885         91 ---TVIG--THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR--CVGNYTQP-DKV--FTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        91 ---~~~~--~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~--~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~~v  160 (327)
                         ..+.  .|..+|.+++|+|+++.|++++.|+.|++||+++++  ....+..+ ..+  ..++++++.+++++.|+.|
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v  165 (337)
T 1gxr_A           86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI  165 (337)
T ss_dssp             SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence               1222  688999999999999999999999999999999876  34444433 233  4566678899999999999


Q ss_pred             EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885        161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA  240 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  240 (327)
                      ++||+++.+.......  ......++.++|+++.+++++.++.+.+|.........    .+. +         ..++.+
T Consensus       166 ~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----~~~-~---------~~~v~~  229 (337)
T 1gxr_A          166 AVWDLHNQTLVRQFQG--HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ----QHD-F---------TSQIFS  229 (337)
T ss_dssp             EEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEE-C---------SSCEEE
T ss_pred             EEEeCCCCceeeeeec--ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEe----eec-C---------CCceEE
Confidence            9999998764332221  22345778888988888888888887775554332111    111 1         125789


Q ss_pred             EEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       241 v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      ++|+|++++|++++.|+.|++||+.+++. ..+..|..+|.+++|+|+|++|++++.++.
T Consensus       230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  288 (337)
T 1gxr_A          230 LGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence            99999999999999999999999988764 456778889999999999999999987543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5e-32  Score=243.93  Aligned_cols=270  Identities=14%  Similarity=0.185  Sum_probs=195.6

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-----EEEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCCCc
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-----RLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ....++++|+...++++++.||.|+||++.....     ....+|..+|.+++|+  ++..+++|+.||+|++||+.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            4567899985444555678899999999966431     2344699999999995  67899999999999999998762


Q ss_pred             --------eeeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeee--eC-CCcE--EEEecCCCeEEEEe
Q psy11885         90 --------ETVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNY--TQ-PDKV--FTMSLCGEKFVVGT  155 (327)
Q Consensus        90 --------~~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~--~~-~~~~--~~~~~~~~~~~~~~  155 (327)
                              ...+.+|...|.+++|+|++ +.|++++.|++|++||+++++++..+  .. ...+  +.+++++..+++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                    24567899999999999998 69999999999999999999988887  33 3334  45566788999999


Q ss_pred             CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEE---eecCeEEEEEccCCcccccceeeeeeeeeccCCe
Q psy11885        156 AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS---SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI  232 (327)
Q Consensus       156 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~  232 (327)
                      .|+.|++||+++.+.+.............++.+.+++..++++   +.++.+.+  |+........... .   .     
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~i--wd~~~~~~~~~~~-~---~-----  264 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVAL--WDTKHLEEPLSLQ-E---L-----  264 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEE--EETTBCSSCSEEE-E---C-----
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEE--EcCccccCCceEE-e---c-----
Confidence            9999999999987654332111111123567778876655665   35555555  5543321111110 0   0     


Q ss_pred             eeEEEeeEEEEecCCCeEE-EecCCCeEEEEeCCCcee-eeecCc--CCcceEEEEECCCCCEEEEEEc
Q psy11885        233 EKIYPVNAISFHQEYNTFA-TGGSDGYVNIWDGFNKKR-LCQFHR--YDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       233 ~~~~~v~~v~~spd~~~la-sgs~dg~i~iWd~~~~~~-~~~~~~--~~~~v~~l~fspdg~~la~~~~  297 (327)
                      .+...+.+++|+|+++.|+ +|+.||.|++||+.+++. +..+..  +..+|.+++|+|++.+++++++
T Consensus       265 ~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~  333 (402)
T 2aq5_A          265 DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCE  333 (402)
T ss_dssp             CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTE
T ss_pred             cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecce
Confidence            0112478899999999996 566899999999988763 333333  4578999999999999886544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=8.2e-32  Score=242.09  Aligned_cols=242  Identities=16%  Similarity=0.132  Sum_probs=162.5

Q ss_pred             EEEecCCCcEEEEEECCCcEEEEECCCCeEEE------EecCCCceeeEEEe---------CCceEEEEecCCcEEEEEc
Q psy11885         21 VKFAPNSNQFLLASSWDCNVSLYDITNNNLRL------KYAHSDPVLDCCFQ---------DAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        21 i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~------~~~h~~~v~~~~~~---------~~~~~~sgs~Dg~i~vwd~   85 (327)
                      ..+++ .+.+|++++.|++|+|||...++...      ..+|.+.|.+++|+         ++..++|||.|++||+||+
T Consensus        95 ~~~~~-~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~  173 (393)
T 4gq1_A           95 NSSPV-YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL  173 (393)
T ss_dssp             --CCE-EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred             eecCC-CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence            33334 45689999999999999999886432      23699999999995         5678999999999999999


Q ss_pred             CCCce-eeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeeeeC--------------------------
Q psy11885         86 NTQTE-TVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNYTQ--------------------------  137 (327)
Q Consensus        86 ~~~~~-~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~~--------------------------  137 (327)
                      .++.. ..+..|..+|.+++|+|++ .+|++|+.|++|++||+++++.......                          
T Consensus       174 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  253 (393)
T 4gq1_A          174 TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI  253 (393)
T ss_dssp             ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC
T ss_pred             CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc
Confidence            87654 4566788999999999987 4799999999999999988764322110                          


Q ss_pred             --CCcEEEEe-cCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcc
Q psy11885        138 --PDKVFTMS-LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE  214 (327)
Q Consensus       138 --~~~~~~~~-~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  214 (327)
                        ......+. +++..+++++.|+++++||++............                         ..+......+.
T Consensus       254 ~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~-------------------------~~~~~~~~~~~  308 (393)
T 4gq1_A          254 ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDST-------------------------MKLGPKNLLPN  308 (393)
T ss_dssp             SSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------------------------------CCSCS
T ss_pred             cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeec-------------------------CccccEEEccc
Confidence              01122232 568899999999999999997643211000000                         00000000000


Q ss_pred             cccceeeeeeeeeccCCeeeEEEeeEEEEec--CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEE
Q psy11885        215 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ--EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVL  292 (327)
Q Consensus       215 ~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp--d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~l  292 (327)
                      .       ..+...       .......|+|  ++.++++|+.||+|+|||..+++.+..+..|..+|++|+|||||++|
T Consensus       309 ~-------~~~~~~-------~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~L  374 (393)
T 4gq1_A          309 V-------QGISLF-------PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHL  374 (393)
T ss_dssp             E-------EEECSS-------CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEE
T ss_pred             c-------cccccc-------CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEE
Confidence            0       000000       0112234444  44466789999999999999998888777888899999999999999


Q ss_pred             EEEEcccccc
Q psy11885        293 AIACSYNYEL  302 (327)
Q Consensus       293 a~~~~~~~~~  302 (327)
                      |+++.++..+
T Consensus       375 A~as~~Gv~l  384 (393)
T 4gq1_A          375 AIATEGSVLL  384 (393)
T ss_dssp             EEEESSEEEE
T ss_pred             EEEeCCCeEE
Confidence            9997655443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.9e-30  Score=230.42  Aligned_cols=247  Identities=13%  Similarity=0.170  Sum_probs=186.0

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCc
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ...|.+.|++++|+|+ +.+|++|+.||.|++||+.+++.. ....|...|.+++| ++..+++|+.|+.|++||++...
T Consensus       130 ~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~  207 (401)
T 4aez_A          130 ETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIAN  207 (401)
T ss_dssp             ECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSS
T ss_pred             ecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE-CCCEEEEEcCCCCEEEEecccCc
Confidence            3447789999999995 579999999999999999988754 44579999999999 56799999999999999998443


Q ss_pred             --eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecCCC-eEEEEe--CCCeEE
Q psy11885         90 --ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLCGE-KFVVGT--AGRKVC  161 (327)
Q Consensus        90 --~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~--~d~~v~  161 (327)
                        ...+..|...|.+++|+|+++.|++|+.|+.|++||+++++++..+..+   ...+.+++.+. .+++++  .|+.|+
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~  287 (401)
T 4aez_A          208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH  287 (401)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEE
T ss_pred             ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEE
Confidence              3456789999999999999999999999999999999998887776532   23455666554 455554  799999


Q ss_pred             EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe--ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS--IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      +||+++.+.+....   ......++.+++++..+++++  .++.+.+|.+......  ....+..|.         ..|.
T Consensus       288 i~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~--~~~~~~~h~---------~~v~  353 (401)
T 4aez_A          288 FWNAATGARVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT--KQVDIPAHD---------TRVL  353 (401)
T ss_dssp             EEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE--EEEEEECCS---------SCCC
T ss_pred             EEECCCCCEEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce--eEEEecCCC---------CCEE
Confidence            99999876543322   223467888999988888754  5677776555432211  111222222         2588


Q ss_pred             EEEEecCCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885        240 AISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       240 ~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~  273 (327)
                      +++|+|++++|++++.||.|++|++.+++.+...
T Consensus       354 ~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          354 YSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            9999999999999999999999999988876554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.1e-30  Score=241.67  Aligned_cols=269  Identities=17%  Similarity=0.246  Sum_probs=199.6

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-C----CCceeeEEEeCCceEEEEecCCcEEEEEcCC
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-H----SDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h----~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      .|.+.|++++|+ + +.+|++++.|+.|++||+.+++....+. +    ...+.++.++++..+++++.|+.|++||+.+
T Consensus       251 ~~~~~v~~~~~~-~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          251 PVQGGIFALSWL-D-SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             CCCSCEEEEEES-S-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred             ccCCceEEEEEc-C-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence            688899999999 4 5799999999999999999888655443 3    3567788888899999999999999999886


Q ss_pred             Cce-eeeecCCccEEEEEEeCC---------------------------------CCEEEEEECCCeEEEEeCCC-----
Q psy11885         88 QTE-TVIGTHDQPIRAVEYSDE---------------------------------VNCILTGSWDTSVKMWDPRS-----  128 (327)
Q Consensus        88 ~~~-~~~~~h~~~V~~l~~~~~---------------------------------~~~l~sgs~d~~i~lwdl~~-----  128 (327)
                      +.. ..+..|..+|.+++| |+                                 ++.+++++.|+.|++||+++     
T Consensus       329 ~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  407 (615)
T 1pgu_A          329 DEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGS  407 (615)
T ss_dssp             EEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSS
T ss_pred             CcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccC
Confidence            543 234455555555555 43                                 56677777777777776643     


Q ss_pred             -----------------------------CceeeeeeCCCcEEEEecCCCeEEEEeC-CCeEEEEECCCCccceeeeccc
Q psy11885        129 -----------------------------SRCVGNYTQPDKVFTMSLCGEKFVVGTA-GRKVCIWDLRNMGYIMQRRESS  178 (327)
Q Consensus       129 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~v~iwD~~~~~~~~~~~~~~  178 (327)
                                                   ++.+..+.....+.++.+.++.+++++. |+.|++||+.+..... .....
T Consensus       408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~  486 (615)
T 1pgu_A          408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTP  486 (615)
T ss_dssp             CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSSC
T ss_pred             CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccCC
Confidence                                         2222233333344445555888999999 9999999998754321 11222


Q ss_pred             ceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee-eeeccCCeeeEEEeeEEEEec----------CC
Q psy11885        179 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC-HRIKEDGIEKIYPVNAISFHQ----------EY  247 (327)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~v~~v~~sp----------d~  247 (327)
                      ......+++++|++..+++++.++.+.+|.........    .+.. |         ..+|.+++|+|          ++
T Consensus       487 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~h---------~~~v~~~~~sp~~~~~~~~~~~~  553 (615)
T 1pgu_A          487 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT----SRWAFR---------TSKINAISWKPAEKGANEEEIEE  553 (615)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----CCSCCC---------SSCEEEEEECCCC------CCSC
T ss_pred             ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCccee----EeecCC---------CCceeEEEEcCccccccccccCC
Confidence            33346788999999999999999998886665443221    1111 2         23689999999          99


Q ss_pred             CeEEEecCCCeEEEEeCCCc-eeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        248 NTFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       248 ~~lasgs~dg~i~iWd~~~~-~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      ++||+|+.||+|++||+.++ +.+..+.+|..+|++++|+|||+ |++++.++
T Consensus       554 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~  605 (615)
T 1pgu_A          554 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA  605 (615)
T ss_dssp             CEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS
T ss_pred             CEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCc
Confidence            99999999999999999987 67888889999999999999999 99988544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.98  E-value=8.3e-30  Score=259.57  Aligned_cols=286  Identities=16%  Similarity=0.198  Sum_probs=216.8

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe---CCceEEEEecCCcEEEEEcCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ---DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~---~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      ..|.+.|++++|+|+ +.+|++++.|++|++||+.+++.. ....|...|.+++|+   +...+++|+.|+.|++||+++
T Consensus       654 ~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~  732 (1249)
T 3sfz_A          654 KAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ  732 (1249)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS
T ss_pred             ccCCCCEEEEEEecC-CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Confidence            357889999999995 579999999999999999998854 445799999999995   345788999999999999998


Q ss_pred             Ccee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-----------------------------
Q psy11885         88 QTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-----------------------------  137 (327)
Q Consensus        88 ~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-----------------------------  137 (327)
                      +... .+.+|...|.+++|+|+++.+++++.|++|++||+++++....+..                             
T Consensus       733 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~  812 (1249)
T 3sfz_A          733 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK  812 (1249)
T ss_dssp             SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE
T ss_pred             cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCE
Confidence            7754 5678999999999999999999999999999999987654433210                             


Q ss_pred             -----------------------------CCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEE
Q psy11885        138 -----------------------------PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC  188 (327)
Q Consensus       138 -----------------------------~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~  188 (327)
                                                   ......+++++..+++++.|+.|++||+.+...+....  .......++++
T Consensus       813 l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~h~~~v~~v~~  890 (1249)
T 3sfz_A          813 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR--GHLSWVHGVMF  890 (1249)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC--CCSSCEEEEEE
T ss_pred             EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC--CCccceEEEEE
Confidence                                         11234456667889999999999999998765432222  22234578889


Q ss_pred             eeCCCceEEEeecCeEEEEEccCCcccccceee--ee--------------------eeeeccCC--eeeEEEeeEEEEe
Q psy11885        189 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA--FK--------------------CHRIKEDG--IEKIYPVNAISFH  244 (327)
Q Consensus       189 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~--------------------~h~~~~~~--~~~~~~v~~v~~s  244 (327)
                      +|++..+++++.++.+.+|..............  ..                    ........  .....++.+++|+
T Consensus       891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  970 (1249)
T 3sfz_A          891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS  970 (1249)
T ss_dssp             CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred             CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence            999888999998988888654321100000000  00                    00000000  0011247899999


Q ss_pred             cCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        245 QEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      |+++++++|+.||.|++||+.+++.+..+.+|...|++++|+|||++|++++.++.
T Consensus       971 p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~ 1026 (1249)
T 3sfz_A          971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSV 1026 (1249)
T ss_dssp             TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSB
T ss_pred             CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCE
Confidence            99999999999999999999999988888899999999999999999999976543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.98  E-value=6.1e-30  Score=231.76  Aligned_cols=256  Identities=15%  Similarity=0.224  Sum_probs=181.4

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      +.|.+.|++|+|+|+ +.+|++|+.|++|+|||+++++.. ....|...+.++.+. +..+++|+.|+.+++||......
T Consensus       144 ~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~  221 (420)
T 4gga_A          144 EQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEH  221 (420)
T ss_dssp             CSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSC
T ss_pred             cCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC-CCEEEEEeCCCceeEeeecccce
Confidence            446678999999995 579999999999999999999854 445688888887764 67899999999999999886543


Q ss_pred             --eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee----eeee-CCCcEEE--EecCC-CeEEE--EeCCC
Q psy11885         91 --TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV----GNYT-QPDKVFT--MSLCG-EKFVV--GTAGR  158 (327)
Q Consensus        91 --~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~----~~~~-~~~~~~~--~~~~~-~~~~~--~~~d~  158 (327)
                        ..+..|...+..+.++++++.+++++.|+.+++||..+++..    .... ....+.+  +.+.+ ..+++  |+.|+
T Consensus       222 ~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~  301 (420)
T 4gga_A          222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR  301 (420)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred             eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC
Confidence              356789999999999999999999999999999999876532    2222 2233444  44433 34554  45799


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee--cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI--EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      +|++||+++++.......   .....++.+.++...+++++.  ++.+.+|.+....    ....+.+|.         .
T Consensus       302 ~I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~----~v~~l~gH~---------~  365 (420)
T 4gga_A          302 HIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA----KVAELKGHT---------S  365 (420)
T ss_dssp             EEEEEETTTTEEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC----EEEEECCCS---------S
T ss_pred             EEEEEeCCccccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc----EEEEEcCCC---------C
Confidence            999999998765433222   123456677888888877764  5666665544332    222334443         3


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEE
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF  285 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f  285 (327)
                      +|.+++|+|||++|||||.|++|+|||+.+.........+...+....|
T Consensus       366 ~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~  414 (420)
T 4gga_A          366 RVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL  414 (420)
T ss_dssp             CEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence            6899999999999999999999999999876665555444444433344

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.98  E-value=5.2e-30  Score=246.53  Aligned_cols=249  Identities=20%  Similarity=0.336  Sum_probs=182.5

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|++++|+|+ +++|++|+.|++|+|||+.+++. .....|...|.+++|+ ++.+++||+.|++|++||+....
T Consensus       427 ~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~  505 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC  505 (694)
T ss_dssp             ECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred             cCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence            457789999999995 58999999999999999999885 4455799999999995 78899999999999999986554


Q ss_pred             eeee----ecCCccEEEEEEeCCC--CEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeE
Q psy11885         90 ETVI----GTHDQPIRAVEYSDEV--NCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        90 ~~~~----~~h~~~V~~l~~~~~~--~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v  160 (327)
                      ...+    ..|...|.+++|+|++  ..+++|+.|++|++||++++++...+..+. .+  +++++++..+++++.|++|
T Consensus       506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i  585 (694)
T 3dm0_A          506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV  585 (694)
T ss_dssp             EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred             ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence            3322    3688899999999986  689999999999999999988887776543 33  4566778899999999999


Q ss_pred             EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeecc------CCeee
Q psy11885        161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE------DGIEK  234 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~------~~~~~  234 (327)
                      ++||+++.+.+....   ......+++++|++. +++++.++.+.+|......................      ....+
T Consensus       586 ~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (694)
T 3dm0_A          586 LLWDLAEGKKLYSLE---ANSVIHALCFSPNRY-WLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK  661 (694)
T ss_dssp             EEEETTTTEEEECCB---CSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCCCC----------------C
T ss_pred             EEEECCCCceEEEec---CCCcEEEEEEcCCCc-EEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCce
Confidence            999999876543221   122356777887754 44555566666655444322211111000000000      00011


Q ss_pred             EEEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885        235 IYPVNAISFHQEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       235 ~~~v~~v~~spd~~~lasgs~dg~i~iWd~~  265 (327)
                      ...+.+++|||++++|++|+.||+|+||++.
T Consensus       662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            1136789999999999999999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=3.8e-28  Score=221.44  Aligned_cols=261  Identities=18%  Similarity=0.280  Sum_probs=200.6

Q ss_pred             CCCC-eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce-
Q psy11885         14 PEDG-ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE-   90 (327)
Q Consensus        14 ~~~~-I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~-   90 (327)
                      |.+. +++++|+   +.+|++|+.||+|++||+.+++.. ...+|..+|.+++|. +..+++|+.|++|++||++++.. 
T Consensus       117 h~~~v~~~~~~~---g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~  192 (445)
T 2ovr_B          117 HDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECI  192 (445)
T ss_dssp             STTSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEE
T ss_pred             cCCCcEEEEEEc---CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEE
Confidence            4444 5666665   468999999999999999988854 444799999999997 66899999999999999988765 


Q ss_pred             eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEEecCCCeEEEEeCCCeEEEEECCCCc
Q psy11885         91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMG  169 (327)
Q Consensus        91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~  169 (327)
                      ..+..|...|.++.++  ++.+++|+.|++|++||+++++++..+..+ ..+.++.++++.+++++.|+.|++||+++.+
T Consensus       193 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~  270 (445)
T 2ovr_B          193 HTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET  270 (445)
T ss_dssp             EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE
T ss_pred             EEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc
Confidence            3567899999999996  478999999999999999999988887653 4567777889999999999999999998765


Q ss_pred             cceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe
Q psy11885        170 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT  249 (327)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~  249 (327)
                      .+.....+  .....++.+  ++..+++++.++.+.+|.......    ...+..|.         ..+.++++  ++++
T Consensus       271 ~~~~~~~~--~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~---------~~v~~~~~--~~~~  331 (445)
T 2ovr_B          271 CLHTLQGH--TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC----IHTLTGHQ---------SLTSGMEL--KDNI  331 (445)
T ss_dssp             EEEEECCC--SSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE----EEEECCCC---------SCEEEEEE--ETTE
T ss_pred             EeEEecCC--CCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE----EEEEcCCc---------ccEEEEEE--eCCE
Confidence            44322211  122344444  667788888888888866544332    12222222         13455555  5679


Q ss_pred             EEEecCCCeEEEEeCCCceeeeecCc---CCcceEEEEECCCCCEEEEEEccccc
Q psy11885        250 FATGGSDGYVNIWDGFNKKRLCQFHR---YDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       250 lasgs~dg~i~iWd~~~~~~~~~~~~---~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                      |++|+.||.|++||+.+++.+..+..   |..+|++++|+  +++|++|+.++..
T Consensus       332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v  384 (445)
T 2ovr_B          332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTV  384 (445)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeE
Confidence            99999999999999999988888765   77789999996  5799999876533

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.7e-29  Score=228.29  Aligned_cols=232  Identities=16%  Similarity=0.296  Sum_probs=180.0

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC----------Ce-EEEEecCCCceeeEEEe-CCc-eEEEEecC
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN----------NN-LRLKYAHSDPVLDCCFQ-DAV-HSFSGGLD   77 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~----------~~-~~~~~~h~~~v~~~~~~-~~~-~~~sgs~D   77 (327)
                      ...|.+.|++++|+|+++.+|++++.||.|++||+..          .+ ......|...|.+++|+ .+. .+++|+.|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            3557789999999996567999999999999999976          23 34455799999999995 455 89999999


Q ss_pred             CcEEEEEcCCCc--------eeeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCC---ceeeeeeCC-CcE--E
Q psy11885         78 CTLKMFDFNTQT--------ETVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSS---RCVGNYTQP-DKV--F  142 (327)
Q Consensus        78 g~i~vwd~~~~~--------~~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~---~~~~~~~~~-~~~--~  142 (327)
                      |+|++||+....        ...+..|...|.+++|+| ++..|++++.|+.|++||++++   +.+..+..+ ..+  +
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  283 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL  283 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred             CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence            999999998732        123557999999999999 6789999999999999999986   455555432 334  4


Q ss_pred             EEecCCC-eEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceee
Q psy11885        143 TMSLCGE-KFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA  221 (327)
Q Consensus       143 ~~~~~~~-~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  221 (327)
                      ++++.+. .+++++.|+.|++||+++.+..       +    .                                    .
T Consensus       284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~-------~----~------------------------------------~  316 (430)
T 2xyi_A          284 SFNPYSEFILATGSADKTVALWDLRNLKLK-------L----H------------------------------------S  316 (430)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEETTCTTSC-------S----E------------------------------------E
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEeCCCCCCC-------e----E------------------------------------E
Confidence            4555565 5889999999999999863210       0    0                                    0


Q ss_pred             eeeeeeccCCeeeEEEeeEEEEecCCC-eEEEecCCCeEEEEeCCC--------------ceeeeecCcCCcceEEEEEC
Q psy11885        222 FKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGGSDGYVNIWDGFN--------------KKRLCQFHRYDTGITSLCFS  286 (327)
Q Consensus       222 ~~~h~~~~~~~~~~~~v~~v~~spd~~-~lasgs~dg~i~iWd~~~--------------~~~~~~~~~~~~~v~~l~fs  286 (327)
                      +..|.         .+|.+++|+|+++ +|++++.|+.|+|||+..              .+.+..+.+|...|++++|+
T Consensus       317 ~~~h~---------~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  387 (430)
T 2xyi_A          317 FESHK---------DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN  387 (430)
T ss_dssp             EECCS---------SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC
T ss_pred             eecCC---------CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC
Confidence            00111         1478899999995 589999999999999876              24566677888899999999


Q ss_pred             CCCC-EEEEEEcc
Q psy11885        287 YDGN-VLAIACSY  298 (327)
Q Consensus       287 pdg~-~la~~~~~  298 (327)
                      |+++ +||+++.+
T Consensus       388 p~~~~~l~s~s~d  400 (430)
T 2xyi_A          388 PNEPWIICSVSED  400 (430)
T ss_dssp             SSSTTEEEEEETT
T ss_pred             CCCCCEEEEEECC
Confidence            9999 78888744

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.4e-30  Score=249.09  Aligned_cols=239  Identities=17%  Similarity=0.190  Sum_probs=183.1

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--E-EEEecCCCceeeEEEe-C--CceEEEEecCCcEEEEEc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--L-RLKYAHSDPVLDCCFQ-D--AVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--~-~~~~~h~~~v~~~~~~-~--~~~~~sgs~Dg~i~vwd~   85 (327)
                      ..|.+.|++++|+|+ +.+|++|+.||+|++||+.++.  . .....|..+|.+++|+ +  +..+++|+.||+|++||+
T Consensus         6 ~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~   84 (753)
T 3jro_A            6 NAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE   84 (753)
T ss_dssp             --CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred             ccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence            457889999999996 5789999999999999998543  3 3344799999999994 5  789999999999999999


Q ss_pred             CCCce---eeeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCCceee--eee-CCCcEEE--Eec---------
Q psy11885         86 NTQTE---TVIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSSRCVG--NYT-QPDKVFT--MSL---------  146 (327)
Q Consensus        86 ~~~~~---~~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~~~~~--~~~-~~~~~~~--~~~---------  146 (327)
                      .++..   ..+..|..+|.+++|+|+  ++.+++|+.|++|++||++++....  .+. ....+.+  +.+         
T Consensus        85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~  164 (753)
T 3jro_A           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH  164 (753)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred             CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence            98752   345679999999999999  9999999999999999998874322  222 2333444  444         


Q ss_pred             ----CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeee
Q psy11885        147 ----CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF  222 (327)
Q Consensus       147 ----~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  222 (327)
                          ++..+++++.||.|++||+++....         .  ...                                 ..+
T Consensus       165 ~~~~d~~~l~sgs~dg~I~iwd~~~~~~~---------~--~~~---------------------------------~~~  200 (753)
T 3jro_A          165 NGTKESRKFVTGGADNLVKIWKYNSDAQT---------Y--VLE---------------------------------STL  200 (753)
T ss_dssp             --CGGGCCEEEEETTSCEEEEEEETTTTE---------E--EEE---------------------------------EEE
T ss_pred             ccCCCCCEEEEEECCCeEEEEeccCCccc---------c--eee---------------------------------eee
Confidence                3678999999999999998754210         0  000                                 000


Q ss_pred             eeeeeccCCeeeEEEeeEEEEecC---CCeEEEecCCCeEEEEeCCCce-----eeeecCcCCcceEEEEECCCCCEEEE
Q psy11885        223 KCHRIKEDGIEKIYPVNAISFHQE---YNTFATGGSDGYVNIWDGFNKK-----RLCQFHRYDTGITSLCFSYDGNVLAI  294 (327)
Q Consensus       223 ~~h~~~~~~~~~~~~v~~v~~spd---~~~lasgs~dg~i~iWd~~~~~-----~~~~~~~~~~~v~~l~fspdg~~la~  294 (327)
                      ..|.         .+|.+++|+|+   +++|++|+.||+|++||+.+++     .+.....|...|++++|+|+|++|++
T Consensus       201 ~~h~---------~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s  271 (753)
T 3jro_A          201 EGHS---------DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL  271 (753)
T ss_dssp             CCCS---------SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEE
T ss_pred             cCCC---------CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEE
Confidence            1111         25789999999   8999999999999999998764     33334557788999999999999999


Q ss_pred             EEccccccCC
Q psy11885        295 ACSYNYELET  304 (327)
Q Consensus       295 ~~~~~~~~~~  304 (327)
                      ++.++....+
T Consensus       272 ~s~Dg~I~vw  281 (753)
T 3jro_A          272 SGGDNKVTLW  281 (753)
T ss_dssp             ECSSSCEECC
T ss_pred             EcCCCEEEEE
Confidence            9876544333

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=3.4e-29  Score=223.69  Aligned_cols=240  Identities=15%  Similarity=0.146  Sum_probs=176.1

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec---CCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA---HSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      .|.+.|++++|+|+++.+|++++.|+.|++||+.+........   |...|.+++|+ ++..+++|+.|+.|++||++..
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  195 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH  195 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC
Confidence            5888999999999556899999999999999999866655544   34779999995 7889999999999999999655


Q ss_pred             ceeeeecCCccEEEEEEeCCCC-EEEEEECCCeEEEEeCCC----CceeeeeeCCCcEE--EEec-CCCeEEEEeCCCeE
Q psy11885         89 TETVIGTHDQPIRAVEYSDEVN-CILTGSWDTSVKMWDPRS----SRCVGNYTQPDKVF--TMSL-CGEKFVVGTAGRKV  160 (327)
Q Consensus        89 ~~~~~~~h~~~V~~l~~~~~~~-~l~sgs~d~~i~lwdl~~----~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~d~~v  160 (327)
                      ....+..|...|.+++|+|+++ .+++++.|++|++||+++    ++++..+.....+.  .+++ ++..+++++.|+.|
T Consensus       196 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i  275 (383)
T 3ei3_B          196 EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEI  275 (383)
T ss_dssp             EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEE
T ss_pred             EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcE
Confidence            5566778999999999999998 999999999999999987    55666665544454  4556 67899999999999


Q ss_pred             EEEECCCCccceeeecccc-----e----------eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeee
Q psy11885        161 CIWDLRNMGYIMQRRESSL-----K----------FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCH  225 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h  225 (327)
                      ++||+++.+.......+..     .          .....+.+.+++..  +++.++.+.+|....+..    ...+..|
T Consensus       276 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~----~~~l~~~  349 (383)
T 3ei3_B          276 RVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL----VHQLRDP  349 (383)
T ss_dssp             EEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE----EEEECBT
T ss_pred             EEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce----eeeecCC
Confidence            9999987654322211100     0          00112334444433  445667777755544332    1122221


Q ss_pred             eeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885        226 RIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       226 ~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~  266 (327)
                      .       +...+.+++|+|++++|++|+ |+.|+|||+.+
T Consensus       350 ~-------~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          350 N-------AAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             T-------BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             C-------CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            1       112466789999999999997 99999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.2e-30  Score=233.66  Aligned_cols=266  Identities=14%  Similarity=0.097  Sum_probs=189.5

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCC-----ceeeEEEe-CCceEEEEecCCcEEEEEcC
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSD-----PVLDCCFQ-DAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-----~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      .|++.|++++|||+ +.+||+++.||+|++||.++  +.....|..     .|.+++|+ ++..+++|+.||+|++||+.
T Consensus        83 ~~~~~V~~vawSPd-G~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPI-DDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSS-SSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            45789999999995 57999999999999999644  333233554     49999995 89999999999999999998


Q ss_pred             CCce--------eee----ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee---eeee-CC-CcEEEEecCCC
Q psy11885         87 TQTE--------TVI----GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV---GNYT-QP-DKVFTMSLCGE  149 (327)
Q Consensus        87 ~~~~--------~~~----~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~---~~~~-~~-~~~~~~~~~~~  149 (327)
                      ++..        ..+    .+|...|.+++|+|+|  +++++.|++|++||+.+++..   +++. .+ ..+.++.+.++
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~  237 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDY  237 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETT
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECC
Confidence            8742        333    5678899999999999  889999999999999887742   3443 22 34444444477


Q ss_pred             eEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEE--eeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee
Q psy11885        150 KFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC--FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI  227 (327)
Q Consensus       150 ~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~  227 (327)
                      .+++++ +++|++||+.+.+......  ........+.+  ++++..++++..+|. .+|..+                 
T Consensus       238 ~LASa~-~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d-----------------  296 (588)
T 2j04_A          238 KVVLTC-PGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED-----------------  296 (588)
T ss_dssp             EEEEEC-SSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS-----------------
T ss_pred             EEEEEe-CCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec-----------------
Confidence            888886 6999999998765422211  12222345666  666555556555555 554433                 


Q ss_pred             ccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCCC
Q psy11885        228 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPD  307 (327)
Q Consensus       228 ~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~  307 (327)
                                  .++|+||+..+|+.  |+++++|+.... .+..+.+ ...|.+++|||||+.+|+++.-.....+=+.
T Consensus       297 ------------~~~~spd~~l~a~~--d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~lA~~~~i~~~~~~y~i  360 (588)
T 2j04_A          297 ------------ELHVTADNIIAPYL--EKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYSIAIVYDMERVAFKYKI  360 (588)
T ss_dssp             ------------SEEEECCCSSHHHH--HHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSEEEEEEEEECSSCCCCC
T ss_pred             ------------cEEECCCceEEEEc--CCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCEEEEEEeccCceeEEee
Confidence                        25688999888886  999999986543 3444444 5579999999999999999865333222111


Q ss_pred             -CCCCCcEEEEEcc
Q psy11885        308 -PIPPNNIFIRHVT  320 (327)
Q Consensus       308 -~~~~~~~~~~~~~  320 (327)
                       +.-.=||-.+|+.
T Consensus       361 ~s~~~~~i~f~pL~  374 (588)
T 2j04_A          361 ASEQSFNIMFAPLY  374 (588)
T ss_dssp             SSSCCEEEEEEESS
T ss_pred             ccceEEEEEEEEcc
Confidence             2344456666665

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=9.4e-30  Score=231.62  Aligned_cols=248  Identities=15%  Similarity=0.181  Sum_probs=169.5

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC---CCceeeEEEe-CCceEEEEecCCcEEEEEcC
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH---SDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h---~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      ...|.+.|++|+|+|.++.+|+++|.|++|++||++++.......+   ...+.+++|+ ++..+++|+.||.|++||++
T Consensus       160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~  239 (435)
T 4e54_B          160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD  239 (435)
T ss_dssp             CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS
T ss_pred             ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC
Confidence            3457889999999996678999999999999999988876555432   3356788885 78899999999999999998


Q ss_pred             CCceeeeecCCccEEEEEEeCCCC-EEEEEECCCeEEEEeCCCCceeeeee----CCCcEEE--EecCCCeEEEEeCCCe
Q psy11885         87 TQTETVIGTHDQPIRAVEYSDEVN-CILTGSWDTSVKMWDPRSSRCVGNYT----QPDKVFT--MSLCGEKFVVGTAGRK  159 (327)
Q Consensus        87 ~~~~~~~~~h~~~V~~l~~~~~~~-~l~sgs~d~~i~lwdl~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~d~~  159 (327)
                      ......+..|...|.+++|+|++. ++++|+.|++|++||+++.+....+.    +...+.+  +++++..|++++.|+.
T Consensus       240 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~  319 (435)
T 4e54_B          240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE  319 (435)
T ss_dssp             SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC
T ss_pred             cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE
Confidence            766566788999999999999875 78899999999999998876544332    2234444  4567889999999999


Q ss_pred             EEEEECCCCccceeeecccce----eeeEEeEEeeCCCceEEEeec----------CeEEEEEccCCcccccceeeeeee
Q psy11885        160 VCIWDLRNMGYIMQRRESSLK----FQTRCIKCFPNKQGYVLSSIE----------GRAAVEYLDTGPEMQKMKYAFKCH  225 (327)
Q Consensus       160 v~iwD~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~h  225 (327)
                      |++||+++.+.......+...    .......+++....++++...          ....|..|+.....  ....+.. 
T Consensus       320 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~--~~~~l~~-  396 (435)
T 4e54_B          320 IRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK--MMCQLYD-  396 (435)
T ss_dssp             EEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC--EEEEECC-
T ss_pred             EEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc--EEEEEeC-
Confidence            999999887643222111100    001122344444444444321          11123345433211  1111110 


Q ss_pred             eeccCCeeeEEEeeEE-EEecCCCeEEEecCCCeEEEEeCCCcee
Q psy11885        226 RIKEDGIEKIYPVNAI-SFHQEYNTFATGGSDGYVNIWDGFNKKR  269 (327)
Q Consensus       226 ~~~~~~~~~~~~v~~v-~~spd~~~lasgs~dg~i~iWd~~~~~~  269 (327)
                             .|...|.++ +|||+|++||+|+ |++|+||++++++.
T Consensus       397 -------~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          397 -------PESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             -------SSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             -------CCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence                   111246666 6999999999986 78999999988764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.2e-29  Score=246.81  Aligned_cols=245  Identities=11%  Similarity=0.068  Sum_probs=177.7

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceee
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETV   92 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~   92 (327)
                      .|.+.|++++|+|+ +.+||+|+.||+|+|||..+.+......|..+|.+++|+++.++++++.|++|++||++++....
T Consensus        15 gh~~~V~~lafspd-g~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~   93 (902)
T 2oaj_A           15 GMSSKPIAAAFDFT-QNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLT   93 (902)
T ss_dssp             ECSSCEEEEEEETT-TTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEE
T ss_pred             CCCCCcEEEEECCC-CCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEE
Confidence            46789999999995 58999999999999999988887666678889999999877789999999999999999876543


Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceee-----------eee-CCCcE--EEEecC-CCeEEEEeCC
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVG-----------NYT-QPDKV--FTMSLC-GEKFVVGTAG  157 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~-----------~~~-~~~~~--~~~~~~-~~~~~~~~~d  157 (327)
                      ...|...|.+++|+|+++++++|+.||+|++||++++++..           .+. +...+  +++++. +..+++++.|
T Consensus        94 ~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d  173 (902)
T 2oaj_A           94 TVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY  173 (902)
T ss_dssp             EEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred             EEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence            33477899999999999999999999999999999887531           111 11233  445553 3578999999


Q ss_pred             CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885        158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP  237 (327)
Q Consensus       158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  237 (327)
                      +.| +||+++.+....... ..          +.+      ...+.       ...      .....         |...
T Consensus       174 g~v-lWd~~~~~~~~~~~~-~~----------~~g------~~~~~-------~~~------~~~~~---------h~~~  213 (902)
T 2oaj_A          174 VTL-TYSLVENEIKQSFIY-EL----------PPF------APGGD-------FSE------KTNEK---------RTPK  213 (902)
T ss_dssp             CEE-EEETTTTEEEEEECC-CB----------CTT------CCCST-------TCC------CTTSC---------BCCC
T ss_pred             CcE-EEECCCCceEEEEec-cc----------CCc------CCCcc-------ccc------ccccc---------cCCC
Confidence            999 999987542211000 00          000      00000       000      00001         1125


Q ss_pred             eeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee--cC---c-------------CCcceEEEEEC----CCC-CEEEE
Q psy11885        238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ--FH---R-------------YDTGITSLCFS----YDG-NVLAI  294 (327)
Q Consensus       238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~--~~---~-------------~~~~v~~l~fs----pdg-~~la~  294 (327)
                      |.+++|+|+|++||+|+.||+|++||+.+++.+..  +.   .             +..+|++++|+    ||+ .+|++
T Consensus       214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s  293 (902)
T 2oaj_A          214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS  293 (902)
T ss_dssp             EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe
Confidence            88999999999999999999999999998876542  21   1             23479999995    554 56666


Q ss_pred             EEcc
Q psy11885        295 ACSY  298 (327)
Q Consensus       295 ~~~~  298 (327)
                      |+.+
T Consensus       294 g~~~  297 (902)
T 2oaj_A          294 HKSI  297 (902)
T ss_dssp             EECS
T ss_pred             CCCC
Confidence            6443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=3.6e-29  Score=220.57  Aligned_cols=248  Identities=13%  Similarity=0.160  Sum_probs=183.5

Q ss_pred             CCCCCeeEEEEecCC--CcEEEEEECCCcEEEEECCCCe-E-EEEecCCCceeeEEE-------eCCceEEEEecCCcEE
Q psy11885         13 PPEDGITAVKFAPNS--NQFLLASSWDCNVSLYDITNNN-L-RLKYAHSDPVLDCCF-------QDAVHSFSGGLDCTLK   81 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~--~~~l~s~~~d~~i~iwd~~~~~-~-~~~~~h~~~v~~~~~-------~~~~~~~sgs~Dg~i~   81 (327)
                      .|.+.|++++|+|++  +.+|++++.|+.|++||+.+++ . .....|...|.++.|       +++..+++++.|+.|+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~  142 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK  142 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence            467899999999963  5799999999999999999876 3 444579999999965       2577999999999999


Q ss_pred             EEEcCCCc--eeeeecCC----ccEEEEE----EeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEE--Eec---
Q psy11885         82 MFDFNTQT--ETVIGTHD----QPIRAVE----YSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFT--MSL---  146 (327)
Q Consensus        82 vwd~~~~~--~~~~~~h~----~~V~~l~----~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~--~~~---  146 (327)
                      +||+.++.  ...+..|.    ..|.+++    |+++++.+++++.|+.|++||+++++..........+.+  +++   
T Consensus       143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~  222 (357)
T 3i2n_A          143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDI  222 (357)
T ss_dssp             EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSS
T ss_pred             EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCC
Confidence            99998765  23344433    3788888    678999999999999999999999887666555555544  555   


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCccceeee---cccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccc------
Q psy11885        147 CGEKFVVGTAGRKVCIWDLRNMGYIMQRR---ESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQ------  216 (327)
Q Consensus       147 ~~~~~~~~~~d~~v~iwD~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~------  216 (327)
                      +++.+++++.|+.|++||+++.+......   .........+++++|++. .+++++.++.+.+|.........      
T Consensus       223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g  302 (357)
T 3i2n_A          223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG  302 (357)
T ss_dssp             SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred             CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence            67889999999999999998755432211   112233457788888877 67778888888886665432110      


Q ss_pred             ---------cceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE-EecCCCeEEEEeCCCcee
Q psy11885        217 ---------KMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSDGYVNIWDGFNKKR  269 (327)
Q Consensus       217 ---------~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la-sgs~dg~i~iWd~~~~~~  269 (327)
                               .....+..|         ..+|.+++|+|++++|+ +|+.||.|++||+.+.+.
T Consensus       303 ~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          303 IEMGVAGSVSLLQNVTLS---------TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CCCCCCCEEEEEEEEECC---------SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             CccccccccceeeccccC---------CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence                     011112222         23689999999999998 899999999999887653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=3e-28  Score=213.33  Aligned_cols=249  Identities=19%  Similarity=0.293  Sum_probs=182.5

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE-ecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK-YAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|++++|+|+ +.+|++++.|+.|++|+......... ..+...+..+.+ +.+..+++|+.|+.+++||+....
T Consensus        83 ~~h~~~V~~~~~s~d-g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~  161 (340)
T 4aow_A           83 RGHSHFVSDVVISSD-GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC  161 (340)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred             eCCCCCEEEEEECCC-CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc
Confidence            457789999999995 58999999999999999998875443 346666777777 477899999999999999987665


Q ss_pred             ee--eeecCCccEEEEEEeCCC--CEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEEE
Q psy11885         90 ET--VIGTHDQPIRAVEYSDEV--NCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVCI  162 (327)
Q Consensus        90 ~~--~~~~h~~~V~~l~~~~~~--~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~i  162 (327)
                      ..  ....|...+..++|++++  ..+++++.|++|++||+++++++..+..+. .+  +++++++..+++++.|+.|++
T Consensus       162 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~i  241 (340)
T 4aow_A          162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML  241 (340)
T ss_dssp             EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence            43  345789999999998764  578899999999999999998887776432 33  456677889999999999999


Q ss_pred             EECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        163 WDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       163 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                      ||+++.+.+......   ....++.+.|+. .+++++.++.+.+|..........    +..+........|...|++++
T Consensus       242 wd~~~~~~~~~~~~~---~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~  313 (340)
T 4aow_A          242 WDLNEGKHLYTLDGG---DIINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDE----LKQEVISTSSKAEPPQCTSLA  313 (340)
T ss_dssp             EETTTTEEEEEEECS---SCEEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEE----ECCC-------CCCCCEEEEE
T ss_pred             EEeccCceeeeecCC---ceEEeeecCCCC-ceeeccCCCEEEEEECCCCeEEEe----ccccceeeeccCCCCCEEEEE
Confidence            999987654332221   234556666654 566777788877765543322111    111111001112334689999


Q ss_pred             EecCCCeEEEecCCCeEEEEeCCCcee
Q psy11885        243 FHQEYNTFATGGSDGYVNIWDGFNKKR  269 (327)
Q Consensus       243 ~spd~~~lasgs~dg~i~iWd~~~~~~  269 (327)
                      |+|++++||+|+.||+|+|||+.+|.+
T Consensus       314 ~s~dg~~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          314 WSADGQTLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred             ECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence            999999999999999999999988753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=4.3e-29  Score=221.37  Aligned_cols=267  Identities=11%  Similarity=0.128  Sum_probs=184.5

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceE-EEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHS-FSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~-~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|++.|++++|+|+ +.+|++|+.| .+++||+++++......+. .+..+.+. .++.+ ++|+.|++|++||+.++.
T Consensus        16 ~~h~~~V~~v~fs~d-g~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~   92 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQD-QSCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ   92 (355)
T ss_dssp             ---CCCCCEEEECTT-SSEEEEECSS-EEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred             ccCCCceEEEEECCC-CCEEEEEcCC-EEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence            557889999999996 5788887755 5799999887755444333 45556663 44444 678889999999998887


Q ss_pred             eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC-ceeeeeeCCCcEEEEecCCCeEEE--EeCCCeEEEEECC
Q psy11885         90 ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS-RCVGNYTQPDKVFTMSLCGEKFVV--GTAGRKVCIWDLR  166 (327)
Q Consensus        90 ~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~v~iwD~~  166 (327)
                      ......|..+|.+++++++.  ++.+ .|++|++||++++ +.+..+..+..+.++++  ..+++  ++.+|.|++||++
T Consensus        93 ~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~  167 (355)
T 3vu4_A           93 DVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQ  167 (355)
T ss_dssp             EEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECC
T ss_pred             EEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECC
Confidence            65444577799999998754  4444 4789999999988 77666655333444554  66666  5789999999998


Q ss_pred             CCccce--------------eeecccceeeeEEeEEeeCCCceEEEeecCe-EEEEEccCCcccccceeeee-e-eeecc
Q psy11885        167 NMGYIM--------------QRRESSLKFQTRCIKCFPNKQGYVLSSIEGR-AAVEYLDTGPEMQKMKYAFK-C-HRIKE  229 (327)
Q Consensus       167 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~-~-h~~~~  229 (327)
                      +.+...              ......+.....+++++|++..+++++.++. +.+|....+...    ..+. . |.   
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~----~~~~~g~h~---  240 (355)
T 3vu4_A          168 SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV----REFRRGLDR---  240 (355)
T ss_dssp             C------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE----EEEECTTCC---
T ss_pred             CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE----EEEEcCCCC---
Confidence            754100              0111122334678899999988999999997 888665544322    1222 1 22   


Q ss_pred             CCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceee--eecC---------------------cCCcceEEEEEC
Q psy11885        230 DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL--CQFH---------------------RYDTGITSLCFS  286 (327)
Q Consensus       230 ~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~--~~~~---------------------~~~~~v~~l~fs  286 (327)
                            .+|.+++|+|++++|++|+.|++|+|||+.++...  ..+.                     ....+...++|+
T Consensus       241 ------~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  314 (355)
T 3vu4_A          241 ------ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI  314 (355)
T ss_dssp             ------SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES
T ss_pred             ------CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe
Confidence                  36899999999999999999999999998764311  1110                     011223679999


Q ss_pred             CCCCEEEEEEccc
Q psy11885        287 YDGNVLAIACSYN  299 (327)
Q Consensus       287 pdg~~la~~~~~~  299 (327)
                      |||++|++++.++
T Consensus       315 ~d~~~l~~~~~dg  327 (355)
T 3vu4_A          315 SESSLVVVWPHTR  327 (355)
T ss_dssp             SSSEEEEEETTTT
T ss_pred             CCCCEEEEEeCCC
Confidence            9999999998654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.4e-29  Score=220.77  Aligned_cols=257  Identities=7%  Similarity=-0.019  Sum_probs=181.1

Q ss_pred             CcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCC---------Cce-e-eeecC
Q psy11885         28 NQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT---------QTE-T-VIGTH   96 (327)
Q Consensus        28 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~---------~~~-~-~~~~h   96 (327)
                      +.++++|+.||+|++||+.+++...... ...|.++.+++.  +++++.|++|++|+.+.         +.. . ....|
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  124 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS  124 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC
T ss_pred             CCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC
Confidence            4689999999999999999887543333 356667777555  99999999999997663         221 1 22356


Q ss_pred             CccEEEEEEeC--CCCEEEEEECCCeEEEEeCCCCceeeeeeC----CCcEEEEecCCCeEEEEeCCCeEEEEECCCCcc
Q psy11885         97 DQPIRAVEYSD--EVNCILTGSWDTSVKMWDPRSSRCVGNYTQ----PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGY  170 (327)
Q Consensus        97 ~~~V~~l~~~~--~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~  170 (327)
                      ..+|.+++|+|  +++++++++.|++|++||+++++++.....    .....++++++..+++|+.|+.|++||+++++.
T Consensus       125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~  204 (343)
T 3lrv_A          125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ  204 (343)
T ss_dssp             SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred             CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence            68999999999  999999999999999999999988665432    223566778889999999999999999998765


Q ss_pred             ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee--EEEEecCCC
Q psy11885        171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN--AISFHQEYN  248 (327)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~--~v~~spd~~  248 (327)
                      +.......+.....+++++|++..+++++ ++.+.+|.+........+. .+..|.         .++.  +++|+|+++
T Consensus       205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~g~  273 (343)
T 3lrv_A          205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP-TYTIPE---------FKTGTVTYDIDDSGK  273 (343)
T ss_dssp             CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC-CCBC--------------CCEEEEECTTSS
T ss_pred             CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec-cccccc---------ccccceEEEECCCCC
Confidence            41222221234568889999888777777 5565554443322111111 111111         1233  699999999


Q ss_pred             eEEEecC-CCeEEEEeCCCceeeeecCcCCcceEEEEECC---CCCEEEEEEcccccc
Q psy11885        249 TFATGGS-DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY---DGNVLAIACSYNYEL  302 (327)
Q Consensus       249 ~lasgs~-dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp---dg~~la~~~~~~~~~  302 (327)
                      +|++++. |+.|+||++.+.......    .++..++|+|   +++.|++++.++...
T Consensus       274 ~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~  327 (343)
T 3lrv_A          274 NMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIA  327 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEE
T ss_pred             EEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceE
Confidence            9999988 999999998665433322    4678889999   899999888665443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=1.3e-28  Score=218.37  Aligned_cols=254  Identities=12%  Similarity=0.146  Sum_probs=184.8

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE---EecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL---KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      .|.+.|++++|+|+ +.+|++++.|+.|++||+.+++...   ...|...|.+++|+ ++..+++++.|+.|++||++..
T Consensus        50 ~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~  128 (372)
T 1k8k_C           50 EHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE  128 (372)
T ss_dssp             CCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred             CCCCcccEEEEeCC-CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCC
Confidence            57789999999995 5799999999999999999887432   24688899999995 7889999999999999999876


Q ss_pred             ce----e-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCC------------------CCceeeeeeCC-CcE--E
Q psy11885         89 TE----T-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR------------------SSRCVGNYTQP-DKV--F  142 (327)
Q Consensus        89 ~~----~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~------------------~~~~~~~~~~~-~~~--~  142 (327)
                      ..    . ....|...|.+++|+|++++|++++.|+.|++||++                  .++++..+..+ ..+  +
T Consensus       129 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  208 (372)
T 1k8k_C          129 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV  208 (372)
T ss_dssp             TTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE
T ss_pred             CcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE
Confidence            52    2 235688999999999999999999999999999954                  56666666533 233  4


Q ss_pred             EEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccC--Ccc--cccc
Q psy11885        143 TMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT--GPE--MQKM  218 (327)
Q Consensus       143 ~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~~~~  218 (327)
                      .++++++.+++++.|+.|++||+++.+.+.....+  .....++++++++..++++ .++.+.+|....  +.-  ....
T Consensus       209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~  285 (372)
T 1k8k_C          209 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL  285 (372)
T ss_dssp             EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence            55667889999999999999999887654333222  2245778888887655555 777777766654  210  0000


Q ss_pred             e---------------e---eeeeeee------ccCCeeeEEEeeEEEEe-cCC---CeEEEecCCCeEEEEeCCCceee
Q psy11885        219 K---------------Y---AFKCHRI------KEDGIEKIYPVNAISFH-QEY---NTFATGGSDGYVNIWDGFNKKRL  270 (327)
Q Consensus       219 ~---------------~---~~~~h~~------~~~~~~~~~~v~~v~~s-pd~---~~lasgs~dg~i~iWd~~~~~~~  270 (327)
                      .               +   .......      ......|..+|++++|+ +++   ++|+||+.||+|++||+.+++.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             CccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence            0               0   0000000      00001233479999976 666   99999999999999998876543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=2.7e-28  Score=218.64  Aligned_cols=279  Identities=15%  Similarity=0.188  Sum_probs=180.1

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe----CCceEEEEecCCcEEEEEcCCC
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ----DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~----~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      .|.+.|++++|+|+++.+|++++.|+.|++||+.+++......+...+.++.+.    ++..+++|+.|+.|++||++++
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  176 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG  176 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence            478899999999966679999999999999999999987777788889998884    3448999999999999999877


Q ss_pred             ce-eeeecCCccEEEEEEeCCCC-EEEEEECCCeEEEEeCCCCc-eeeee---------------e-CCCcE--EEEecC
Q psy11885         89 TE-TVIGTHDQPIRAVEYSDEVN-CILTGSWDTSVKMWDPRSSR-CVGNY---------------T-QPDKV--FTMSLC  147 (327)
Q Consensus        89 ~~-~~~~~h~~~V~~l~~~~~~~-~l~sgs~d~~i~lwdl~~~~-~~~~~---------------~-~~~~~--~~~~~~  147 (327)
                      .. ..+..|..+|.+++|+|+++ .+++|+.|+.|++||+++++ ++..+               . ....+  +.++++
T Consensus       177 ~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  256 (408)
T 4a11_B          177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD  256 (408)
T ss_dssp             CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred             ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence            64 45678999999999999998 58999999999999998765 33322               1 11223  456667


Q ss_pred             CCeEEEEeCCCeEEEEECCCCccceeeeccccee---eeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee
Q psy11885        148 GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKF---QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC  224 (327)
Q Consensus       148 ~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  224 (327)
                      +..+++++.|+.|++||+++.+............   .............+++++.++.+.++.......    ...+..
T Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----~~~~~~  332 (408)
T 4a11_B          257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ----ITMLKG  332 (408)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE----EEEECC
T ss_pred             CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc----eeeecc
Confidence            8899999999999999999865432211111000   001111122345667777788777755544322    222233


Q ss_pred             eeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       225 h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      |.         .+|.+++|+|++++|++|+.||.|++||+.+++.+.......   ....++|....+.+.++....+..
T Consensus       333 ~~---------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  400 (408)
T 4a11_B          333 HY---------KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSA  400 (408)
T ss_dssp             CS---------SCEEEEEEETTTTEEEEEETTSCEEEEEECC--------------------------------------
T ss_pred             CC---------CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecccCccCceee
Confidence            32         258899999999999999999999999999887765543322   224455544444444444444444


Q ss_pred             CCC
Q psy11885        305 PPD  307 (327)
Q Consensus       305 ~~~  307 (327)
                      |..
T Consensus       401 W~~  403 (408)
T 4a11_B          401 WSH  403 (408)
T ss_dssp             ---
T ss_pred             cCC
Confidence            533

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.5e-28  Score=213.62  Aligned_cols=245  Identities=13%  Similarity=0.180  Sum_probs=186.8

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC-----CcEEEEEc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD-----CTLKMFDF   85 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D-----g~i~vwd~   85 (327)
                      ..|.+.|++++|+|+ +.+|++++.|+.|++||+.+++......|..++.+++|+ ++..+++++.+     +.|++||+
T Consensus        71 ~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~  149 (369)
T 3zwl_B           71 DGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI  149 (369)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred             hhcCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence            457789999999995 579999999999999999999877777788999999995 78888999988     99999998


Q ss_pred             CCCce------------eeeecCCc--cEEEEEEeCCCCEEEEEECCCeEEEEeCCC-CceeeeeeCC-CcE--EEEecC
Q psy11885         86 NTQTE------------TVIGTHDQ--PIRAVEYSDEVNCILTGSWDTSVKMWDPRS-SRCVGNYTQP-DKV--FTMSLC  147 (327)
Q Consensus        86 ~~~~~------------~~~~~h~~--~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-~~~~~~~~~~-~~~--~~~~~~  147 (327)
                      .....            ..+..|..  .+.+++|+|+++.|++++.|+.|++||+++ .+.+..+..+ ..+  +.++++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  229 (369)
T 3zwl_B          150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPD  229 (369)
T ss_dssp             EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTT
T ss_pred             cCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCC
Confidence            75431            22344555  899999999999999999999999999998 6777666643 333  456667


Q ss_pred             CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeE------------EEEEccCCccc
Q psy11885        148 GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRA------------AVEYLDTGPEM  215 (327)
Q Consensus       148 ~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~~  215 (327)
                      +..+++++.|+.|++||+++.+.+....   .......+.+.|++..+++++.++..            .+..|+.... 
T Consensus       230 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-  305 (369)
T 3zwl_B          230 LTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-  305 (369)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC-
T ss_pred             CCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-
Confidence            8899999999999999999876443322   22335677888888888888776632            2223332221 


Q ss_pred             ccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeee
Q psy11885        216 QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC  271 (327)
Q Consensus       216 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~  271 (327)
                       .....+..|         ..+|.+++|+|++++|++|+.||.|++|++.++....
T Consensus       306 -~~~~~~~~~---------~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  351 (369)
T 3zwl_B          306 -EEIGRVQGH---------FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF  351 (369)
T ss_dssp             -CEEEEEECC---------SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred             -cchhheecc---------cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence             111122222         2358999999999999999999999999988765433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=4.4e-28  Score=236.59  Aligned_cols=269  Identities=15%  Similarity=0.149  Sum_probs=202.9

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .|.+.|++++|+|+ +.+|++++.|+.|++||+.+++.. ....|...|.+++|+ ++..+++++.|++|++||++++..
T Consensus        53 ~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~  131 (814)
T 3mkq_A           53 VTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA  131 (814)
T ss_dssp             CCSSCEEEEEEEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred             cCCCcEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence            57789999999995 579999999999999999988854 445699999999995 778999999999999999987633


Q ss_pred             --eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeeeC----CCcEEEEec--CCCeEEEEeCCCeEE
Q psy11885         91 --TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYTQ----PDKVFTMSL--CGEKFVVGTAGRKVC  161 (327)
Q Consensus        91 --~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~d~~v~  161 (327)
                        ..+..|..+|.+++|+| +++.+++++.|++|++||+++++....+..    ......+++  ++..+++++.|+.|+
T Consensus       132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~  211 (814)
T 3mkq_A          132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK  211 (814)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred             EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence              45678999999999999 889999999999999999988876665543    233456666  778899999999999


Q ss_pred             EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885        162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI  241 (327)
Q Consensus       162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  241 (327)
                      +||+++.+.+.....  ......++.++|+++.+++++.++.+.+|........    ..+..|.         .++.++
T Consensus       212 ~~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~----~~~~~~~---------~~v~~~  276 (814)
T 3mkq_A          212 IWDYQTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE----KTLNVGL---------ERSWCI  276 (814)
T ss_dssp             EEETTTTEEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE----EEECCSS---------SSEEEE
T ss_pred             EEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE----EEeecCC---------CcEEEE
Confidence            999987664332222  2223577889999888888888888888655443221    1112111         257899


Q ss_pred             EEecCCCeE-EEecCCCeEEEEeCCCcee----------ee---------------------------------ecCcCC
Q psy11885        242 SFHQEYNTF-ATGGSDGYVNIWDGFNKKR----------LC---------------------------------QFHRYD  277 (327)
Q Consensus       242 ~~spd~~~l-asgs~dg~i~iWd~~~~~~----------~~---------------------------------~~~~~~  277 (327)
                      +|+|+++.+ ++.+.|+.+.+|++.....          +.                                 .+..+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (814)
T 3mkq_A          277 ATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVD  356 (814)
T ss_dssp             EECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCS
T ss_pred             EEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCc
Confidence            999998742 4444567788887653221          11                                 011233


Q ss_pred             cceEEEEECCCCCEEEEEEc
Q psy11885        278 TGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       278 ~~v~~l~fspdg~~la~~~~  297 (327)
                      ..+.+++|||||++||+++.
T Consensus       357 ~~~~~~~~spdg~~la~~~~  376 (814)
T 3mkq_A          357 VFPQSLAHSPNGRFVTVVGD  376 (814)
T ss_dssp             SCCSEEEECTTSSEEEEEET
T ss_pred             cCCceeEECCCCCEEEEecC
Confidence            35789999999999999874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.1e-27  Score=207.83  Aligned_cols=238  Identities=16%  Similarity=0.229  Sum_probs=175.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      +.|...|++++|+|+ +++|++|+.|++|++||+++++.. ....|...+.++.+ .+..+++|+.++.+++|+......
T Consensus        64 ~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~-~~~~l~s~~~~~~~~~~~~~~~~~  141 (318)
T 4ggc_A           64 EQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEH  141 (318)
T ss_dssp             CSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSC
T ss_pred             cCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec-CCCEEEEEecCCceEeeecCCCce
Confidence            456788999999995 579999999999999999999854 44568777766554 467899999999999999887644


Q ss_pred             --eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee----ee-CCCcEEEE--ecCCC-eE--EEEeCCC
Q psy11885         91 --TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN----YT-QPDKVFTM--SLCGE-KF--VVGTAGR  158 (327)
Q Consensus        91 --~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~----~~-~~~~~~~~--~~~~~-~~--~~~~~d~  158 (327)
                        ..+..|...+..+.+.++++.+++++.|++|++||+++++....    .. ....+..+  .+.+. .+  ++++.++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  221 (318)
T 4ggc_A          142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR  221 (318)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred             eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCC
Confidence              35678999999999999999999999999999999998764322    11 22233333  33333 33  4566789


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee--cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI--EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      .|++||.+.........   .......+.+.+....+++++.  ++.+.+|.+..+.    ....+..|.         .
T Consensus       222 ~i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~----~~~~l~gH~---------~  285 (318)
T 4ggc_A          222 HIRIWNVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA----KVAELKGHT---------S  285 (318)
T ss_dssp             EEEEEETTTCCEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC----EEEEECCCS---------S
T ss_pred             EEEEEeccccccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc----EEEEEcCCC---------C
Confidence            99999998765432211   1123456677888887777664  5566665444332    222333443         3


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCc
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNK  267 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~  267 (327)
                      +|++++|+|++++|||||.||+|+|||+.+.
T Consensus       286 ~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          286 RVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            6999999999999999999999999998764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=1.6e-28  Score=219.98  Aligned_cols=239  Identities=12%  Similarity=0.081  Sum_probs=183.6

Q ss_pred             ecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCc-------eeeeecCCccEEEEEEeCC----C---CEEEEEECCC
Q psy11885         54 YAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT-------ETVIGTHDQPIRAVEYSDE----V---NCILTGSWDT  119 (327)
Q Consensus        54 ~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~-------~~~~~~h~~~V~~l~~~~~----~---~~l~sgs~d~  119 (327)
                      .+|.++|.+++|++ ..+++|+.||+|++||+++..       ...+..|..+|.+++|+++    +   ++|++++.|+
T Consensus        13 ~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg   91 (397)
T 1sq9_A           13 KAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG   91 (397)
T ss_dssp             SCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred             hhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence            46999999999977 899999999999999999876       4556789999999999999    9   9999999999


Q ss_pred             eEEEEeCCCCce-----eeeeeCC------CcE--EEEe----cCCCe-EEEEeCCCeEEEEECCC------Cccce---
Q psy11885        120 SVKMWDPRSSRC-----VGNYTQP------DKV--FTMS----LCGEK-FVVGTAGRKVCIWDLRN------MGYIM---  172 (327)
Q Consensus       120 ~i~lwdl~~~~~-----~~~~~~~------~~~--~~~~----~~~~~-~~~~~~d~~v~iwD~~~------~~~~~---  172 (327)
                      .|++||+++++.     +..+..+      ..+  +.+.    +++.. +++++.|+.|++||+++      .+.+.   
T Consensus        92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  171 (397)
T 1sq9_A           92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  171 (397)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence            999999988876     6665544      444  4556    66888 99999999999999987      44332   


Q ss_pred             --eeec-----ccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee---eeeccCCeeeEEEeeEEE
Q psy11885        173 --QRRE-----SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC---HRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       173 --~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---h~~~~~~~~~~~~v~~v~  242 (327)
                        ....     ........+++++|++ .+++++.++.+.+|......    ....+..   |...      ..++.+++
T Consensus       172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~h~~~------~~~i~~i~  240 (397)
T 1sq9_A          172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR----PLYNFESQHSMINN------SNSIRSVK  240 (397)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE----EEEEEECCC---CC------CCCEEEEE
T ss_pred             cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc----eeEEEecccccccc------CCccceEE
Confidence              1111     1123345778888888 77777778887775554322    1222222   2000      23689999


Q ss_pred             EecCCCeEEEecCC---CeEEEEeCCCceeeeecCc-------------CCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        243 FHQEYNTFATGGSD---GYVNIWDGFNKKRLCQFHR-------------YDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       243 ~spd~~~lasgs~d---g~i~iWd~~~~~~~~~~~~-------------~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      |+|++++|++++.|   +.|++||+.+++.+..+..             |...|.+++|+|+|++||+++.++....+
T Consensus       241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  318 (397)
T 1sq9_A          241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  318 (397)
T ss_dssp             ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            99999999999999   9999999999998888887             88899999999999999999866544333

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-27  Score=216.72  Aligned_cols=270  Identities=10%  Similarity=0.006  Sum_probs=192.3

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe---EEEEec-------------------------------------
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN---LRLKYA-------------------------------------   55 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~-------------------------------------   55 (327)
                      .++++++|+|++ .+|+++ .++.|++||+.+++   ....+.                                     
T Consensus         5 ~p~~~v~~s~dg-~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRDG-SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSSS-SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCCC-CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            368999999965 565554 58899999998877   332221                                     


Q ss_pred             ------------------CCCceeeEEEe-CCceE-EEEecCCcEEEEEcC--CCcee-eee--cCCccEEEEEEeCCCC
Q psy11885         56 ------------------HSDPVLDCCFQ-DAVHS-FSGGLDCTLKMFDFN--TQTET-VIG--THDQPIRAVEYSDEVN  110 (327)
Q Consensus        56 ------------------h~~~v~~~~~~-~~~~~-~sgs~Dg~i~vwd~~--~~~~~-~~~--~h~~~V~~l~~~~~~~  110 (327)
                                        |...|.+++|+ ++..+ ++|+.|++|++||+.  ++... .+.  .|...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                              22368999995 67775 899999999999998  55443 333  5778999999999999


Q ss_pred             EEEEEECCCeEEEEeCCCCceee----eeeC-CCc--EEEEecC---CCeEEEEeCCCeEEEEECCCCccceeeecccce
Q psy11885        111 CILTGSWDTSVKMWDPRSSRCVG----NYTQ-PDK--VFTMSLC---GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK  180 (327)
Q Consensus       111 ~l~sgs~d~~i~lwdl~~~~~~~----~~~~-~~~--~~~~~~~---~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~  180 (327)
                      +|++|+.|+.|++|++.+++...    .+.. ...  .+.++++   +..+++++.|+.|++||+++.+.+... .....
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~h~  241 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW-LFGHK  241 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-CCCCS
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-ecCCC
Confidence            99999999999999998876543    4332 223  3456666   668999999999999999876543221 11222


Q ss_pred             eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee----------------ccCCeeeEEEeeEEEEe
Q psy11885        181 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI----------------KEDGIEKIYPVNAISFH  244 (327)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~----------------~~~~~~~~~~v~~v~~s  244 (327)
                      ....+++++ ++..+++++.++.+.+|.+..+.....+    ..+..                ..........+.+++|+
T Consensus       242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  316 (450)
T 2vdu_B          242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTF----DYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS  316 (450)
T ss_dssp             SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEE----ECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred             CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeee----cchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence            345778888 8888888888888888666554322111    11100                00000111357899999


Q ss_pred             cCCCeEEEec-CCCeEEEEeC--CCc---eeeeecCcCCcceEEEEECCCCCEEEEE
Q psy11885        245 QEYNTFATGG-SDGYVNIWDG--FNK---KRLCQFHRYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       245 pd~~~lasgs-~dg~i~iWd~--~~~---~~~~~~~~~~~~v~~l~fspdg~~la~~  295 (327)
                      |++++|++++ .|+.|+||++  .++   +.+..+..+ ..|++++|+|++ ++++.
T Consensus       317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~  371 (450)
T 2vdu_B          317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTL  371 (450)
T ss_dssp             SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEE
Confidence            9999999998 8999999999  555   556666666 789999999964 44444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=3.2e-28  Score=219.04  Aligned_cols=246  Identities=14%  Similarity=0.191  Sum_probs=185.3

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC-------e-EEEEecCCCceeeEEEe-CC-ceEEEEecCCcEE
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-------N-LRLKYAHSDPVLDCCFQ-DA-VHSFSGGLDCTLK   81 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~-------~-~~~~~~h~~~v~~~~~~-~~-~~~~sgs~Dg~i~   81 (327)
                      ..|.+.|++++|+|.++.+|++|+.|++|++||+.++       + +.....|...|.+++|+ ++ ..+++|+.|++|+
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~  157 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIL  157 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEE
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEE
Confidence            4578899999999944679999999999999999886       3 34455799999999996 44 5899999999999


Q ss_pred             EEEcCCCcee-ee--ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeee-eCC----CcEEEEecCCCeEEE
Q psy11885         82 MFDFNTQTET-VI--GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY-TQP----DKVFTMSLCGEKFVV  153 (327)
Q Consensus        82 vwd~~~~~~~-~~--~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~-~~~----~~~~~~~~~~~~~~~  153 (327)
                      +||++++... .+  ..|...|.+++|+|+++.|++++.|+.|++||+++++.+..+ ..+    .....+++++..+++
T Consensus       158 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  237 (402)
T 2aq5_A          158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTT  237 (402)
T ss_dssp             EEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEE
T ss_pred             EEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEE
Confidence            9999987654 45  679999999999999999999999999999999999988777 332    234556777778888


Q ss_pred             E---eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccceeeeeeeeecc
Q psy11885        154 G---TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKE  229 (327)
Q Consensus       154 ~---~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~  229 (327)
                      +   +.|+.|++||+++.+...............++.+.+++..+++++ .++.+.++.+.....   ....+..|..  
T Consensus       238 g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~---~~~~l~~~~~--  312 (402)
T 2aq5_A          238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP---FLHYLSMFSS--  312 (402)
T ss_dssp             EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT---CEEEEEEECC--
T ss_pred             eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc---ceEeeccccc--
Confidence            8   689999999999865422222212222346678888887775544 577777766554331   1112222221  


Q ss_pred             CCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee
Q psy11885        230 DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR  269 (327)
Q Consensus       230 ~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~  269 (327)
                           ..++.+++|+|++.+++++  |+.+++|++.+++.
T Consensus       313 -----~~~v~~~~~sp~~~~~~s~--~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          313 -----KESQRGMGYMPKRGLEVNK--CEIARFYKLHERKC  345 (402)
T ss_dssp             -----SSCCSEEEECCGGGSCGGG--TEEEEEEEEETTEE
T ss_pred             -----CCcccceEEecccccceec--ceeEEEEEcCCCcE
Confidence                 1258899999999988754  66999999887643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.9e-29  Score=228.01  Aligned_cols=248  Identities=10%  Similarity=0.122  Sum_probs=180.2

Q ss_pred             EEECCCCeEEEE-ecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCC---Cc---eeeeecCCccEEEEEEeCCCCEE
Q psy11885         42 LYDITNNNLRLK-YAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNT---QT---ETVIGTHDQPIRAVEYSDEVNCI  112 (327)
Q Consensus        42 iwd~~~~~~~~~-~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~---~~---~~~~~~h~~~V~~l~~~~~~~~l  112 (327)
                      .|+.....+... .+|.++|.+++|+  ++.++++|+.|++|++||+.+   +.   ......|..+|.+++|+|+++.|
T Consensus        47 ~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  126 (437)
T 3gre_A           47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAF  126 (437)
T ss_dssp             GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEE
T ss_pred             cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEE
Confidence            488655445555 5688999999995  578999999999999999876   32   22333699999999999999999


Q ss_pred             EEEECCCeEEEEeCC---CCceeeeee-------------CCCcEEEEe----cCCCeEEEEeCCCeEEEEECCCCccce
Q psy11885        113 LTGSWDTSVKMWDPR---SSRCVGNYT-------------QPDKVFTMS----LCGEKFVVGTAGRKVCIWDLRNMGYIM  172 (327)
Q Consensus       113 ~sgs~d~~i~lwdl~---~~~~~~~~~-------------~~~~~~~~~----~~~~~~~~~~~d~~v~iwD~~~~~~~~  172 (327)
                      ++|+.|++|++||++   ++++...+.             ....+.++.    +++..+++++.|+.|++||+++.+.+.
T Consensus       127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  206 (437)
T 3gre_A          127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ  206 (437)
T ss_dssp             EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence            999999999999995   454433222             122233322    447789999999999999999877554


Q ss_pred             eeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe----cCCC
Q psy11885        173 QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH----QEYN  248 (327)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s----pd~~  248 (327)
                      ............+++++|++..+++++.++.+.+|.........    .+.        ..+..+|.+++|+    |++.
T Consensus       207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~--------~~~~~~v~~~~~~~~~s~~~~  274 (437)
T 3gre_A          207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR----SWS--------FGDHAPITHVEVCQFYGKNSV  274 (437)
T ss_dssp             EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE----EEB--------CTTCEEEEEEEECTTTCTTEE
T ss_pred             EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE----EEe--------cCCCCceEEEEeccccCCCcc
Confidence            43332133456888899998888999999988886654432111    111        0112368889555    5678


Q ss_pred             eEEEecCCCeEEEEeCCCceeeeecCc--------------------------CCcceEEEEECCCCCEEEEEEcccccc
Q psy11885        249 TFATGGSDGYVNIWDGFNKKRLCQFHR--------------------------YDTGITSLCFSYDGNVLAIACSYNYEL  302 (327)
Q Consensus       249 ~lasgs~dg~i~iWd~~~~~~~~~~~~--------------------------~~~~v~~l~fspdg~~la~~~~~~~~~  302 (327)
                      +|++|+.||+|++||+.+++.+..+.+                          |...|++++|+ ++++|++|+.++...
T Consensus       275 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~  353 (437)
T 3gre_A          275 IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIV  353 (437)
T ss_dssp             EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence            999999999999999998886655542                          45568899999 789999987655433

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=9.7e-29  Score=220.10  Aligned_cols=192  Identities=11%  Similarity=0.089  Sum_probs=139.9

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      ..|.+.|++++|+|+ +.+|++++.|++|++||+.+++    ......|...|.+++|+ ++..+++|+.|+.|++||++
T Consensus        52 ~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  130 (377)
T 3dwl_C           52 SDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE  130 (377)
T ss_dssp             CCCSSCEEEEEECTT-TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-
T ss_pred             ecCCceEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC
Confidence            457889999999996 5789999999999999999876    44455799999999995 78899999999999999998


Q ss_pred             CCc----eeeeec-CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC------------------CceeeeeeCCCcE--
Q psy11885         87 TQT----ETVIGT-HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS------------------SRCVGNYTQPDKV--  141 (327)
Q Consensus        87 ~~~----~~~~~~-h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~------------------~~~~~~~~~~~~~--  141 (327)
                      ++.    ...+.. |...|.+++|+|++++|++++.|++|++||++.                  ++++..+.+...+  
T Consensus       131 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  210 (377)
T 3dwl_C          131 QENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHA  210 (377)
T ss_dssp             ----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEE
T ss_pred             CcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEE
Confidence            775    344555 999999999999999999999999999999853                  3344444223334  


Q ss_pred             EEEecCCCeEEEEeCCCeEEEEECCCCcc----ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEE
Q psy11885        142 FTMSLCGEKFVVGTAGRKVCIWDLRNMGY----IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVE  207 (327)
Q Consensus       142 ~~~~~~~~~~~~~~~d~~v~iwD~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  207 (327)
                      +.+++++..+++++.|+.|++||+++.+.    +....  .......+++++|++..+++++ ++...++
T Consensus       211 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~-~~~~~~~  277 (377)
T 3dwl_C          211 VGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGY-NYSPILL  277 (377)
T ss_dssp             EEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEES-SSSEEEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEc-CCcEEEE
Confidence            45667788999999999999999998764    21111  1222357788998876665554 4444443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=1.9e-27  Score=216.37  Aligned_cols=254  Identities=15%  Similarity=0.277  Sum_probs=179.1

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      ..|.+.|++++|+   +.+|++|+.||+|++||+.+++.. ....|...|.+++|+ +..+++|+.|++|++||++++..
T Consensus       170 ~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~  245 (435)
T 1p22_A          170 TGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTD  245 (435)
T ss_dssp             CCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSC
T ss_pred             cCCCCcEEEEEEC---CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCC
Confidence            4577899999993   468999999999999999998854 444688999999986 45899999999999999987653


Q ss_pred             ----eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         91 ----TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        91 ----~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                          ..+.+|...|.++++  +++.+++|+.|++|++||+++++++..+..+ ..+.++.++++.+++++.|+.|++||+
T Consensus       246 ~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~  323 (435)
T 1p22_A          246 ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI  323 (435)
T ss_dssp             CEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEEC
Confidence                346689999999999  6789999999999999999999998888754 456777788999999999999999999


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccc-----ceeeeeeeeeccCCeeeEEEeeE
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK-----MKYAFKCHRIKEDGIEKIYPVNA  240 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~h~~~~~~~~~~~~v~~  240 (327)
                      ++++.+.....  ......++.+  ++..+++++.++.+.+|..........     ....+..|.         .+|.+
T Consensus       324 ~~~~~~~~~~~--h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~  390 (435)
T 1p22_A          324 ECGACLRVLEG--HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS---------GRVFR  390 (435)
T ss_dssp             TTCCEEEEECC--CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS---------SCCCC
T ss_pred             CCCCEEEEEeC--CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC---------CCeEE
Confidence            98765433222  2223455555  566788888888888866542211000     111222222         25888


Q ss_pred             EEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECC
Q psy11885        241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  287 (327)
Q Consensus       241 v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp  287 (327)
                      ++|  ++++|++|+.||+|++||+.+........ ...+..++.|.+
T Consensus       391 l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~  434 (435)
T 1p22_A          391 LQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYIS  434 (435)
T ss_dssp             EEE--CSSCEEECCSSSEEEEEC------------------------
T ss_pred             EEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeeec
Confidence            888  78899999999999999998765544332 234556666654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.1e-29  Score=225.98  Aligned_cols=258  Identities=11%  Similarity=0.046  Sum_probs=185.3

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeee
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVI   93 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~   93 (327)
                      -+..|.+++|+|| ++++|+++.|++|+  |...++..  .+|.+.|.+++|++..      .++.+.+|+.+... ...
T Consensus        14 ~~~~v~sv~~SpD-G~~iASas~D~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~-~~~   81 (588)
T 2j04_A           14 FEDWKNNLTWARD-GTLYLTTFPDISIG--QPKYAKDI--NCNSKNLFHVKEFPLE------FENKLDFELAQQNG-LLN   81 (588)
T ss_dssp             CSSSSCCEEECTT-SCEEEECSSSEEEE--EECCCSCC--SSBGGGTEEEEEECCC------CCCTTTTSCCCSSC-SST
T ss_pred             hhccEEEEEECCC-CCEEEEEcCCceee--ccccccee--cCCCccEEEEEECCCC------CcceEEEEeCCCce-Eee
Confidence            4478999999995 68999999999999  75555422  4799999999996432      45555555543222 122


Q ss_pred             ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-------CcEEEEecCCCeEEEEeCCCeEEEEECC
Q psy11885         94 GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-------DKVFTMSLCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~v~iwD~~  166 (327)
                      ..|...|.+++|+|+|++|++++.||+|++||.++  ++..+.+.       ...++++++|+.+++|+.||+|++||++
T Consensus        82 ~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           82 SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            25688999999999999999999999999999644  54444411       2246677889999999999999999998


Q ss_pred             CCcc------ceeee---cccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeee-eeeeccCCeeeEE
Q psy11885        167 NMGY------IMQRR---ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFK-CHRIKEDGIEKIY  236 (327)
Q Consensus       167 ~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~  236 (327)
                      +...      .....   ...+.....+++++|++  +++++.++.+.+|..+.... ......+. .|.         .
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-~~~~~tL~~~h~---------~  227 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-QPVSRMIQNASR---------R  227 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-CCCEEEEECCCS---------S
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-ccceeeeccccc---------C
Confidence            7642      11111   11122346788999887  77788888877755543321 00111121 222         2


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEE--CCCCCEEEEEEcccc
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF--SYDGNVLAIACSYNY  300 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f--spdg~~la~~~~~~~  300 (327)
                      .|.+++|+  ++.||+++ +++|++||..+++......+|...|+.++|  |||++.||+++.++.
T Consensus       228 ~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          228 KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred             cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence            58899999  68999997 699999999887764444479999999999  999999999975544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=5.1e-27  Score=212.77  Aligned_cols=263  Identities=12%  Similarity=0.050  Sum_probs=198.3

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE------ecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK------YAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      ..+.+++|+| ++.++++++.|+.|++||+.+++....      ..|...|.+++|+ ++..+++++.|+.|++||++++
T Consensus       123 ~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~  201 (433)
T 3bws_A          123 FQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL  201 (433)
T ss_dssp             SCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred             CCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence            4577999999 667888888899999999998886542      2577789999995 6778889999999999999886


Q ss_pred             ce-eeeecCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEEEEe--------C
Q psy11885         89 TE-TVIGTHDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFVVGT--------A  156 (327)
Q Consensus        89 ~~-~~~~~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~  156 (327)
                      .. ..+..|...+.+++|+|+++.++++ +.|+.|++||+++++.+..+.....+  ..++++++.+++++        .
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccC
Confidence            65 3456788899999999999988654 47999999999999888777665544  44556777888877        4


Q ss_pred             CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceE-EEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeE
Q psy11885        157 GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI  235 (327)
Q Consensus       157 d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  235 (327)
                      |+.|++||+++.+.....   ........+.+.|+++.++ +++.++.+.++.......    ...+. +         .
T Consensus       282 dg~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~----~~~~~-~---------~  344 (433)
T 3bws_A          282 GGRLGIYSMDKEKLIDTI---GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV----QKSIP-V---------F  344 (433)
T ss_dssp             CEEEEEEETTTTEEEEEE---EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE----EEEEE-C---------S
T ss_pred             CCeEEEEECCCCcEEeec---cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE----EEEec-C---------C
Confidence            889999999876543221   1122346677888876554 445667666655443221    11111 1         0


Q ss_pred             EEeeEEEEecCCCeEEEecC---------------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        236 YPVNAISFHQEYNTFATGGS---------------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       236 ~~v~~v~~spd~~~lasgs~---------------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      ..+.+++|+|++++|++++.               ||.|++||..+++.+..+.. ...+.+++|+|||++|++++.
T Consensus       345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  420 (433)
T 3bws_A          345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDF  420 (433)
T ss_dssp             SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEET
T ss_pred             CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEEC
Confidence            13678999999999888776               57999999999988877765 457899999999999998875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=1.5e-27  Score=206.09  Aligned_cols=195  Identities=18%  Similarity=0.283  Sum_probs=147.5

Q ss_pred             EecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc---eeeeecCCccEEEEEEeC--CCCEEEEEECCCeEEEEeC
Q psy11885         53 KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT---ETVIGTHDQPIRAVEYSD--EVNCILTGSWDTSVKMWDP  126 (327)
Q Consensus        53 ~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~---~~~~~~h~~~V~~l~~~~--~~~~l~sgs~d~~i~lwdl  126 (327)
                      ..+|.+.|.+++|+ ++.++++|+.|++|++||++...   ...+.+|..+|.+++|++  ++++|+||+.|++|++||+
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            34699999999995 78899999999999999997532   246778999999999986  3899999999999999999


Q ss_pred             CCCc--eeeeeeC-CCcEE--EEecC--CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe
Q psy11885        127 RSSR--CVGNYTQ-PDKVF--TMSLC--GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS  199 (327)
Q Consensus       127 ~~~~--~~~~~~~-~~~~~--~~~~~--~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (327)
                      ++++  .+..+.. ...+.  .++++  +..+++++.|++|++||+++.......                         
T Consensus        85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~-------------------------  139 (297)
T 2pm7_B           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI-------------------------  139 (297)
T ss_dssp             SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE-------------------------
T ss_pred             CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee-------------------------
Confidence            8874  3344433 23344  44554  678999999999999999754210000                         


Q ss_pred             ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC-------------CCeEEEecCCCeEEEEeCCC
Q psy11885        200 IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-------------YNTFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       200 ~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd-------------~~~lasgs~dg~i~iWd~~~  266 (327)
                                           .+..|.         ..|.+++|+|+             +++||+|+.|++|++||+.+
T Consensus       140 ---------------------~~~~h~---------~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~  189 (297)
T 2pm7_B          140 ---------------------IIDAHA---------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS  189 (297)
T ss_dssp             ---------------------EEECCS---------SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEET
T ss_pred             ---------------------eeeccc---------CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC
Confidence                                 000011         13556666665             57999999999999999877


Q ss_pred             ce----eeeecCcCCcceEEEEECCCC---CEEEEEEcccccc
Q psy11885        267 KK----RLCQFHRYDTGITSLCFSYDG---NVLAIACSYNYEL  302 (327)
Q Consensus       267 ~~----~~~~~~~~~~~v~~l~fspdg---~~la~~~~~~~~~  302 (327)
                      ++    ....+.+|...|.+|+|+|++   ++||+++.+....
T Consensus       190 ~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~  232 (297)
T 2pm7_B          190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI  232 (297)
T ss_dssp             TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred             CCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence            65    456778899999999999995   8999998765433

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-26  Score=200.54  Aligned_cols=231  Identities=14%  Similarity=0.131  Sum_probs=177.7

Q ss_pred             EEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC
Q psy11885         51 RLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS  129 (327)
Q Consensus        51 ~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~  129 (327)
                      ....+|.++|.+++|+++.++++|+.||.|++||+.++.. ..+..|...|.+++|+|+++.+++++.|+.|++|++...
T Consensus        12 ~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~   91 (313)
T 3odt_A           12 ATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT   91 (313)
T ss_dssp             EEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred             HHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence            3455799999999998899999999999999999987754 456788999999999999999999999999999998764


Q ss_pred             ---ceeeeeeC-CCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEee-CCCceEEEeecCeE
Q psy11885        130 ---RCVGNYTQ-PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRA  204 (327)
Q Consensus       130 ---~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  204 (327)
                         +.+..+.. ...+.++.++++.+++++.|+.|++||..  +......  .......++.+.+ +++.+++++.++.+
T Consensus        92 ~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~--~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i  167 (313)
T 3odt_A           92 SGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEG--SLVYNLQ--AHNASVWDAKVVSFSENKFLTASADKTI  167 (313)
T ss_dssp             TTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT--EEEEEEE--CCSSCEEEEEEEETTTTEEEEEETTSCE
T ss_pred             CCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCC--cEEEecc--cCCCceeEEEEccCCCCEEEEEECCCCE
Confidence               34445443 34567777789999999999999999932  2111111  1222346677777 66777888888887


Q ss_pred             EEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEE
Q psy11885        205 AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC  284 (327)
Q Consensus       205 ~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~  284 (327)
                      .+|  +.....    ..+..        .+..++.+++|+|++. |++++.||.|++||+.+++.+..+..|..+|++++
T Consensus       168 ~i~--d~~~~~----~~~~~--------~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  232 (313)
T 3odt_A          168 KLW--QNDKVI----KTFSG--------IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK  232 (313)
T ss_dssp             EEE--ETTEEE----EEECS--------SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EEE--ecCceE----EEEec--------cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence            774  432211    11111        0112588999999998 99999999999999999999999988999999999


Q ss_pred             ECCCCCEEEEEEccccc
Q psy11885        285 FSYDGNVLAIACSYNYE  301 (327)
Q Consensus       285 fspdg~~la~~~~~~~~  301 (327)
                      |+|+| .|++++.++..
T Consensus       233 ~~~~~-~l~~~~~dg~v  248 (313)
T 3odt_A          233 LLPNG-DIVSCGEDRTV  248 (313)
T ss_dssp             ECTTS-CEEEEETTSEE
T ss_pred             EecCC-CEEEEecCCEE
Confidence            99999 57778765433

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=1.9e-27  Score=208.58  Aligned_cols=229  Identities=14%  Similarity=0.082  Sum_probs=173.6

Q ss_pred             cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc----eeeeecCCccEEEEEEeCCCC-EEEEEECCCeEEEEeC-C
Q psy11885         55 AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT----ETVIGTHDQPIRAVEYSDEVN-CILTGSWDTSVKMWDP-R  127 (327)
Q Consensus        55 ~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~----~~~~~~h~~~V~~l~~~~~~~-~l~sgs~d~~i~lwdl-~  127 (327)
                      +|.+.|.+++|+ ++..+++++.|+.|++||+.++.    ...+..|...|.+++|+|+++ .|++|+.|+.|++||+ +
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~   88 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence            688999999995 77889999999999999998876    455668999999999999999 9999999999999999 8


Q ss_pred             CCceeeeee--CCCcE--EEEecCCCeEEEEeCCCeEEEEECCC---------CccceeeecccceeeeEEeEEeeCCCc
Q psy11885        128 SSRCVGNYT--QPDKV--FTMSLCGEKFVVGTAGRKVCIWDLRN---------MGYIMQRRESSLKFQTRCIKCFPNKQG  194 (327)
Q Consensus       128 ~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (327)
                      +++......  ....+  +.+.+ +..+++++.|+.|++||+++         .+.+...   .......++.+.++.  
T Consensus        89 ~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~--  162 (342)
T 1yfq_A           89 SPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---KVKNKIFTMDTNSSR--  162 (342)
T ss_dssp             SSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS---SSCCCEEEEEECSSE--
T ss_pred             CCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE---eeCCceEEEEecCCc--
Confidence            776532222  33334  44555 88999999999999999986         4322211   133345677776654  


Q ss_pred             eEEEeecCeEEEEEccC-CcccccceeeeeeeeeccCCeeeEEEeeEEEEec-CCCeEEEecCCCeEEEEeCCCc-----
Q psy11885        195 YVLSSIEGRAAVEYLDT-GPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGGSDGYVNIWDGFNK-----  267 (327)
Q Consensus       195 ~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp-d~~~lasgs~dg~i~iWd~~~~-----  267 (327)
                      +++++.++.+.++.... ...  ........|         ..++.+++|+| ++++|++|+.||.|++|++...     
T Consensus       163 l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~---------~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          163 LIVGMNNSQVQWFRLPLCEDD--NGTIEESGL---------KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTC--CCEEEECSC---------SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             EEEEeCCCeEEEEECCccccc--cceeeecCC---------CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence            78888888887765543 211  111111111         12588999999 9999999999999999998776     


Q ss_pred             -eeeeecCcCCc---------ceEEEEECCCCCEEEEEEcccc
Q psy11885        268 -KRLCQFHRYDT---------GITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       268 -~~~~~~~~~~~---------~v~~l~fspdg~~la~~~~~~~  300 (327)
                       +....+..|..         +|.+++|+|+|++||+++.++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  274 (342)
T 1yfq_A          232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce
Confidence             55666666654         8999999999999999987644

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.8e-27  Score=212.15  Aligned_cols=243  Identities=12%  Similarity=0.156  Sum_probs=185.5

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCc---------------eeeEEEeCCceEEEEe
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDP---------------VLDCCFQDAVHSFSGG   75 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~---------------v~~~~~~~~~~~~sgs   75 (327)
                      ..|...|++++|+|+ +.+|++++.|+.|++||+.+++..... .+...               +.+++|+++..+++++
T Consensus       146 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (425)
T 1r5m_A          146 NFHRAPIVSVKWNKD-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG  224 (425)
T ss_dssp             CCCCSCEEEEEECTT-SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEEC
T ss_pred             cCCCccEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEc
Confidence            457789999999995 578999999999999999998865444 34444               8889998778899999


Q ss_pred             cCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEE--EEecCCCeE
Q psy11885         76 LDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVF--TMSLCGEKF  151 (327)
Q Consensus        76 ~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~--~~~~~~~~~  151 (327)
                      .|+.|++||+.++.. ..+..|..+|.+++|+|+++.|++++.|+.|++||+++++++..+..+ ..+.  .+++++ .+
T Consensus       225 ~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l  303 (425)
T 1r5m_A          225 PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KV  303 (425)
T ss_dssp             GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EE
T ss_pred             CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EE
Confidence            999999999988765 356689999999999999999999999999999999998887777543 3344  455556 89


Q ss_pred             EEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccc--------------
Q psy11885        152 VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK--------------  217 (327)
Q Consensus       152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------  217 (327)
                      ++++.|+.|++||+++.+.+.....+  .....++.++|++..+++++.++.+.+|.+........              
T Consensus       304 ~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  381 (425)
T 1r5m_A          304 ISCSMDGSVRLWSLKQNTLLALSIVD--GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLP  381 (425)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECT--TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEE
T ss_pred             EEEeCCCcEEEEECCCCcEeEecccC--CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCccc
Confidence            99999999999999887644332221  23456788899888888888888888765543220000              


Q ss_pred             --ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885        218 --MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       218 --~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~  265 (327)
                        ....+..|..       ..+|.+++|+|++++|++++.||.|++||+.
T Consensus       382 ~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          382 IPLYASYQSSQD-------NDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CCEEEEECCTTC-------CCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             chhhhhhcCccc-------CCceEEEEccCCCceEEEEecCceEEEEeec
Confidence              1111111110       0058899999999999999999999999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=2.5e-27  Score=210.83  Aligned_cols=197  Identities=10%  Similarity=0.123  Sum_probs=150.7

Q ss_pred             CCCCCCeeEEEEecCCCcEEEE--EECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLA--SSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      ..++..+++++|||++ ++|++  ++.|++|+|||+.+++......|...|.+++|+ ++.++++++ ++.+++|+..++
T Consensus       130 ~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~  207 (365)
T 4h5i_A          130 TNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTG  207 (365)
T ss_dssp             CCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTC
T ss_pred             CCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccC
Confidence            3455679999999965 66554  457899999999999987777888999999995 777788887 556777776665


Q ss_pred             cee---eeecCCccEEEEEEeCCCCEEEEEECCC----eEEEEeCCCCcee----eeeeCC-Cc--EEEEecCCCeEEEE
Q psy11885         89 TET---VIGTHDQPIRAVEYSDEVNCILTGSWDT----SVKMWDPRSSRCV----GNYTQP-DK--VFTMSLCGEKFVVG  154 (327)
Q Consensus        89 ~~~---~~~~h~~~V~~l~~~~~~~~l~sgs~d~----~i~lwdl~~~~~~----~~~~~~-~~--~~~~~~~~~~~~~~  154 (327)
                      ...   ....|...|.+++|+|+++.+++++.|+    ++++||+......    ..+..+ ..  .+++++++..|++|
T Consensus       208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg  287 (365)
T 4h5i_A          208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA  287 (365)
T ss_dssp             CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE
T ss_pred             cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE
Confidence            543   3456888999999999999999999887    6899998766432    223322 23  35677889999999


Q ss_pred             eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeee
Q psy11885        155 TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEK  234 (327)
Q Consensus       155 ~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~  234 (327)
                      +.|++|+|||+++++.+..                                  ..             ..|.        
T Consensus       288 s~D~~V~iwd~~~~~~~~~----------------------------------~~-------------~gH~--------  312 (365)
T 4h5i_A          288 SNDNSIALVKLKDLSMSKI----------------------------------FK-------------QAHS--------  312 (365)
T ss_dssp             ETTSCEEEEETTTTEEEEE----------------------------------ET-------------TSSS--------
T ss_pred             cCCCEEEEEECCCCcEEEE----------------------------------ec-------------Cccc--------
Confidence            9999999999986532100                                  00             0121        


Q ss_pred             EEEeeEEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885        235 IYPVNAISFHQEYNTFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       235 ~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~  266 (327)
                       .+|++++||||+++|||||.|++|||||+..
T Consensus       313 -~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          313 -FAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             -SCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             -CCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence             2588999999999999999999999999854

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=8.6e-26  Score=201.96  Aligned_cols=252  Identities=14%  Similarity=0.088  Sum_probs=184.7

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceE-EEEecCCcEEEEEcCCCceeeeecCCccEEEEEEe
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHS-FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYS  106 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~-~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~  106 (327)
                      .++++++.|+.|++||+.++++.....+...+.+++|+ ++..+ ++++.|++|++||+.+++......+...+.+++|+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s   82 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS   82 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEEC
Confidence            56788889999999999999876666655678999995 66666 57778999999999887664433334489999999


Q ss_pred             CCCCEEEEE-ECCCeEEEEeCCCCceeeeeeCCCcEE--EEecCCCeE-EEEeCCCeEEEEECCCCccceeeecccceee
Q psy11885        107 DEVNCILTG-SWDTSVKMWDPRSSRCVGNYTQPDKVF--TMSLCGEKF-VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQ  182 (327)
Q Consensus       107 ~~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~  182 (327)
                      |+++.|+.+ +.|+.|++||+++++.+..+..+..+.  .++++++.+ ++++.++.|++||+++.+........   ..
T Consensus        83 pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~  159 (391)
T 1l0q_A           83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG---RS  159 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC---SS
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC---CC
Confidence            999988654 567999999999999888777655544  455667766 67788999999999877643222211   22


Q ss_pred             eEEeEEeeCCCceE-EEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec---CCCe
Q psy11885        183 TRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG---SDGY  258 (327)
Q Consensus       183 ~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs---~dg~  258 (327)
                      ...+.+.++++.++ ++..++.+.++.......    ...+. +         ...+.+++|+|++++|++++   .++.
T Consensus       160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~-~---------~~~~~~~~~~~~g~~l~~~~~~~~~~~  225 (391)
T 1l0q_A          160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV----IDTVK-V---------EAAPSGIAVNPEGTKAYVTNVDKYFNT  225 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEE-C---------SSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEECCCCeE----EEEEe-c---------CCCccceEECCCCCEEEEEecCcCCCc
Confidence            36677888877664 444556666544333221    11111 1         01467899999999999887   6899


Q ss_pred             EEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        259 VNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       259 i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      |++||+.+++.+..+..+. .+.+++|+|||++|+++++.
T Consensus       226 v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~  264 (391)
T 1l0q_A          226 VSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSF  264 (391)
T ss_dssp             EEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT
T ss_pred             EEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCC
Confidence            9999999998887776554 57899999999998666543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=3.8e-27  Score=214.29  Aligned_cols=248  Identities=13%  Similarity=0.179  Sum_probs=174.3

Q ss_pred             cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc------------eeeeecCC------------ccEEEEEEeCCC
Q psy11885         55 AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT------------ETVIGTHD------------QPIRAVEYSDEV  109 (327)
Q Consensus        55 ~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~------------~~~~~~h~------------~~V~~l~~~~~~  109 (327)
                      .+.+.|.+++|+ ++.++++|+.||.|++||+.++.            ...+.+|.            .+|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467899999995 78899999999999999998765            23566887            889999999998


Q ss_pred             --CEEEEEECCCeEEEEeCCCCcee---------------------------------------eee----eCCCcEEEE
Q psy11885        110 --NCILTGSWDTSVKMWDPRSSRCV---------------------------------------GNY----TQPDKVFTM  144 (327)
Q Consensus       110 --~~l~sgs~d~~i~lwdl~~~~~~---------------------------------------~~~----~~~~~~~~~  144 (327)
                        ..|++++.|++|++||+.+++..                                       ..+    ......+.+
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998764431                                       011    112234566


Q ss_pred             ecCCCeEEEEeCCCeEEEEECCCCccceee------ecccceeeeEEeEEeeCC-CceEEEeecCeEEEEEccCCccccc
Q psy11885        145 SLCGEKFVVGTAGRKVCIWDLRNMGYIMQR------RESSLKFQTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPEMQK  217 (327)
Q Consensus       145 ~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~  217 (327)
                      +++++.++++ .|+.|++||+++.......      ..........+++++|++ ..+++++.++.+.+|..........
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            7778889998 8999999999854322211      111233346788999987 7888888899888866554432111


Q ss_pred             ceeeeeeeeeccCC---eeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC-ceeeeecCcCCcc--------------
Q psy11885        218 MKYAFKCHRIKEDG---IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN-KKRLCQFHRYDTG--------------  279 (327)
Q Consensus       218 ~~~~~~~h~~~~~~---~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~-~~~~~~~~~~~~~--------------  279 (327)
                      ....+..|......   ..+..+|.+++|+|++++|++++. +.|++||+.+ ++.+..+..|...              
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  343 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF  343 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence            12222222110000   000115899999999999999999 9999999987 7777777666431              


Q ss_pred             -eEEEEECCCCCEEEEEEccccccCC
Q psy11885        280 -ITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       280 -v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                       +..++|+|+|++||+|+.++....+
T Consensus       344 ~~~~~~~s~~~~~l~s~s~dg~v~iw  369 (447)
T 3dw8_B          344 DKFECCWNGSDSVVMTGSYNNFFRMF  369 (447)
T ss_dssp             CCCCEEECTTSSEEEEECSTTEEEEE
T ss_pred             cceEEEECCCCCEEEEeccCCEEEEE
Confidence             3349999999999999866544433

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=2.8e-26  Score=203.22  Aligned_cols=241  Identities=16%  Similarity=0.204  Sum_probs=164.5

Q ss_pred             EEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEE-EEEECC
Q psy11885         42 LYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCI-LTGSWD  118 (327)
Q Consensus        42 iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~sgs~d  118 (327)
                      ||++.+.+.. ....|..+|.+++|+ ++..+++|+.| .+++||+++........+ ..+..+++.++++.+ ++++.|
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d   80 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEM-RHLSKVRMLHRTNYVAFVTGVK   80 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEEC-SCCCEEEECTTSSEEEEECSST
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeec-CCeEEEEEcCCCCEEEEEECCc
Confidence            4555555533 345689999999996 67777777755 589999887654433222 247788888888877 567888


Q ss_pred             CeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCC-ccceeeecccceeeeEEeEEeeCCCceEE
Q psy11885        119 TSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNM-GYIMQRRESSLKFQTRCIKCFPNKQGYVL  197 (327)
Q Consensus       119 ~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (327)
                      ++|++||+++++++..+..+..+.++.++++.++++ .++.|++||+++. +.+.....     ......+.+  ..+++
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~-----~~~~~~~s~--~~la~  152 (355)
T 3vu4_A           81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITDDIR-----FGGVCEFSN--GLLVY  152 (355)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSCCEE-----EEEEEEEET--TEEEE
T ss_pred             cEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEEecc-----CCceEEEEc--cEEEE
Confidence            999999999999998888777888888888877766 4789999999876 43322111     222233333  44454


Q ss_pred             --EeecCeEEEEEccCCcccc----c--------ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCe-EEEE
Q psy11885        198 --SSIEGRAAVEYLDTGPEMQ----K--------MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY-VNIW  262 (327)
Q Consensus       198 --~~~~~~~~i~~~~~~~~~~----~--------~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~-i~iW  262 (327)
                        ++.++.+.+|.........    .        ....+..|.         .+|.+++|+|++++||+|+.|++ |+||
T Consensus       153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---------~~v~~~~~s~~g~~l~s~s~d~~~v~iw  223 (355)
T 3vu4_A          153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---------NPIKMVRLNRKSDMVATCSQDGTIIRVF  223 (355)
T ss_dssp             EESSCTTCEEEEECCC------------------CCEEECCCS---------SCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred             eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---------CceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence              3556777765544322000    0        012223332         36899999999999999999998 9999


Q ss_pred             eCCCceeeeecC-c-CCcceEEEEECCCCCEEEEEEccccc
Q psy11885        263 DGFNKKRLCQFH-R-YDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       263 d~~~~~~~~~~~-~-~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                      |+.+++.+..+. + |..+|++++|||||++||+++.+...
T Consensus       224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v  264 (355)
T 3vu4_A          224 KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTL  264 (355)
T ss_dssp             ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEE
T ss_pred             ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEE
Confidence            999999998887 4 88899999999999999999876443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=1.8e-26  Score=203.85  Aligned_cols=243  Identities=17%  Similarity=0.193  Sum_probs=175.4

Q ss_pred             ECCCCe-EEEEecCCCceeeEEEe-C---CceEEEEecCCcEEEEEcCC-Cce--eeeecCCccEEEEEEeCCCCEEEEE
Q psy11885         44 DITNNN-LRLKYAHSDPVLDCCFQ-D---AVHSFSGGLDCTLKMFDFNT-QTE--TVIGTHDQPIRAVEYSDEVNCILTG  115 (327)
Q Consensus        44 d~~~~~-~~~~~~h~~~v~~~~~~-~---~~~~~sgs~Dg~i~vwd~~~-~~~--~~~~~h~~~V~~l~~~~~~~~l~sg  115 (327)
                      +....+ ......|.+.|.+++|+ +   +..+++|+.||.|++||+++ +..  ..+..|..+|.+++|+|++++|+++
T Consensus        25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence            344444 34455799999999996 4   48999999999999999987 333  3567899999999999999999999


Q ss_pred             ECCCeEEEEeCCCCceeeeeeCCCcEEEEe----cCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeC
Q psy11885        116 SWDTSVKMWDPRSSRCVGNYTQPDKVFTMS----LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPN  191 (327)
Q Consensus       116 s~d~~i~lwdl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (327)
                      +.|+.|++||+++++++........+.++.    +++..+++++.|+.|++||+++.+.+.......     ........
T Consensus       105 ~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~  179 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-----RCYCADVI  179 (368)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-----CEEEEEEE
T ss_pred             cCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-----CceEEEec
Confidence            999999999999998877665555555444    456679999999999999999876543322211     22333444


Q ss_pred             CCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe----EEEecCCCeEEEEeCCCc
Q psy11885        192 KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT----FATGGSDGYVNIWDGFNK  267 (327)
Q Consensus       192 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~----lasgs~dg~i~iWd~~~~  267 (327)
                      .+.+++++.++...++.+......  .......+       .  ..+.++++.++...    +++|+.||.|++||+...
T Consensus       180 ~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  248 (368)
T 3mmy_A          180 YPMAVVATAERGLIVYQLENQPSE--FRRIESPL-------K--HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP  248 (368)
T ss_dssp             TTEEEEEEGGGCEEEEECSSSCEE--EEECCCSC-------S--SCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred             CCeeEEEeCCCcEEEEEeccccch--hhhccccc-------c--CCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence            557777888888777665443211  11000000       0  12455666666555    999999999999999876


Q ss_pred             ---eeeeecCcCCc------------ceEEEEECCCCCEEEEEEcccccc
Q psy11885        268 ---KRLCQFHRYDT------------GITSLCFSYDGNVLAIACSYNYEL  302 (327)
Q Consensus       268 ---~~~~~~~~~~~------------~v~~l~fspdg~~la~~~~~~~~~  302 (327)
                         +.+..+..|..            +|++++|+|+|++||+++.++...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~  298 (368)
T 3mmy_A          249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFS  298 (368)
T ss_dssp             CHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEE
T ss_pred             CccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEE
Confidence               44555556654            699999999999999998765433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=3.2e-27  Score=205.92  Aligned_cols=201  Identities=16%  Similarity=0.278  Sum_probs=152.3

Q ss_pred             CCCCCCeeEEEEecC-CCcEEEEEECCCcEEEEECCCCe---EEEEecCCCceeeEEEe-C--CceEEEEecCCcEEEEE
Q psy11885         12 SPPEDGITAVKFAPN-SNQFLLASSWDCNVSLYDITNNN---LRLKYAHSDPVLDCCFQ-D--AVHSFSGGLDCTLKMFD   84 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~-~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~h~~~v~~~~~~-~--~~~~~sgs~Dg~i~vwd   84 (327)
                      ..|.+.|++++|+|. .+.+|++++.|++|++||+.+++   ......|...|.+++|+ +  +..+++|+.|++|++||
T Consensus        54 ~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd  133 (316)
T 3bg1_A           54 RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT  133 (316)
T ss_dssp             ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEE
T ss_pred             cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEe
Confidence            357889999999863 35789999999999999998864   23345699999999995 3  67899999999999999


Q ss_pred             cCCCce----eeeecCCccEEEEEEeCC-----------------CCEEEEEECCCeEEEEeCCCC---ceeeeeeCC-C
Q psy11885         85 FNTQTE----TVIGTHDQPIRAVEYSDE-----------------VNCILTGSWDTSVKMWDPRSS---RCVGNYTQP-D  139 (327)
Q Consensus        85 ~~~~~~----~~~~~h~~~V~~l~~~~~-----------------~~~l~sgs~d~~i~lwdl~~~---~~~~~~~~~-~  139 (327)
                      +.....    ..+..|...|.+++|+|+                 +++|++|+.|++|++||++..   +++..+..+ .
T Consensus       134 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~  213 (316)
T 3bg1_A          134 YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD  213 (316)
T ss_dssp             ECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred             cCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence            987532    234578899999999987                 468999999999999999755   345555543 3


Q ss_pred             cEEEEecC--C----CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCc
Q psy11885        140 KVFTMSLC--G----EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP  213 (327)
Q Consensus       140 ~~~~~~~~--~----~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  213 (327)
                      .+.++.++  +    ..|++++.|++|++||+++....      ...  ..                             
T Consensus       214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~------~~~--~~-----------------------------  256 (316)
T 3bg1_A          214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN------TWS--PK-----------------------------  256 (316)
T ss_dssp             CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC------CCB--CC-----------------------------
T ss_pred             ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc------chh--hh-----------------------------
Confidence            45555543  3    57999999999999998752100      000  00                             


Q ss_pred             ccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885        214 EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       214 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~  265 (327)
                             .+..|.         .+|.+++|+|++++||+|+.|++|+||+..
T Consensus       257 -------~~~~~~---------~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          257 -------LLHKFN---------DVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             -------EEEECS---------SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             -------hhhcCC---------CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence                   000111         147899999999999999999999999964

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=6.1e-27  Score=201.74  Aligned_cols=172  Identities=9%  Similarity=0.023  Sum_probs=120.9

Q ss_pred             cCCcEEEEEcCC-Cce-eeeecCCccEEEEEEeC---CCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc------EEEE
Q psy11885         76 LDCTLKMFDFNT-QTE-TVIGTHDQPIRAVEYSD---EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK------VFTM  144 (327)
Q Consensus        76 ~Dg~i~vwd~~~-~~~-~~~~~h~~~V~~l~~~~---~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~------~~~~  144 (327)
                      .|+.|++|++.. ++. ..+..|...+..++|++   ++..|+||+.|++||+||++++++++++..+..      ..++
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf  234 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY  234 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence            499999999954 433 34567888899999998   779999999999999999999999998874321      2356


Q ss_pred             ecCCCeE------------EEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCC
Q psy11885        145 SLCGEKF------------VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG  212 (327)
Q Consensus       145 ~~~~~~~------------~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  212 (327)
                      +++|..+            ++|+.|++|++||.++.+.+.          ...+.+ |++                    
T Consensus       235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~----------v~~~~~-p~G--------------------  283 (356)
T 2w18_A          235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG----------VMLYCL-PPG--------------------  283 (356)
T ss_dssp             EETTEEEEEEC------------CCEEEEEEETTTTEEEE----------EEEECC-CTT--------------------
T ss_pred             CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE----------EEEeec-cCC--------------------
Confidence            7777655            567788899999987653210          000000 110                    


Q ss_pred             cccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceE-EEEECCCCCE
Q psy11885        213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT-SLCFSYDGNV  291 (327)
Q Consensus       213 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~-~l~fspdg~~  291 (327)
                                  |..         .  .+..+.++..+|+|+.|++|+|||+.+++.+.++.+|...+. +++|||||++
T Consensus       284 ------------h~~---------~--~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~  340 (356)
T 2w18_A          284 ------------QAG---------R--FLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSH  340 (356)
T ss_dssp             ------------CCC---------C--EEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSE
T ss_pred             ------------Ccc---------e--eEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCE
Confidence                        000         0  112233477899999999999999999999999988877655 6899999999


Q ss_pred             EEEEEccccc
Q psy11885        292 LAIACSYNYE  301 (327)
Q Consensus       292 la~~~~~~~~  301 (327)
                      ||+|+.+...
T Consensus       341 LaSGS~D~TI  350 (356)
T 2w18_A          341 LLAGQKDGNI  350 (356)
T ss_dssp             EEEECTTSCE
T ss_pred             EEEEECCCcE
Confidence            9999855443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=5.8e-25  Score=196.60  Aligned_cols=246  Identities=12%  Similarity=0.124  Sum_probs=180.0

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceeee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETVI   93 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~~   93 (327)
                      ..+++++|+|++..++++++.|++|++||+.++++.....+...+.+++|+ ++.+++ +++.|+.|++||+.+++....
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~  111 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT  111 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE
Confidence            469999999975444577779999999999999977666666689999995 666665 555679999999998776543


Q ss_pred             ecCCccEEEEEEeCCCCEE-EEEECCCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeE-EEEeCCCeEEEEECCCCc
Q psy11885         94 GTHDQPIRAVEYSDEVNCI-LTGSWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKF-VVGTAGRKVCIWDLRNMG  169 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~~~l-~sgs~d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~d~~v~iwD~~~~~  169 (327)
                      ..+...+.+++|+|+++.+ ++++.|+.|++||+++++.+..+..+...  ..++++++.+ ++++.++.|++||+++.+
T Consensus       112 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~  191 (391)
T 1l0q_A          112 VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS  191 (391)
T ss_dssp             EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence            3445578999999999977 68888999999999999888877655444  4456667776 567788999999998865


Q ss_pred             cceeeecccceeeeEEeEEeeCCCceEEEee---cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC
Q psy11885        170 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSI---EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE  246 (327)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd  246 (327)
                      .......   .....++++++++..+++++.   ++.+.+  |+.....  ....+..|.          .+.+++|+|+
T Consensus       192 ~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~--~d~~~~~--~~~~~~~~~----------~~~~~~~s~d  254 (391)
T 1l0q_A          192 VIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSM--IDTGTNK--ITARIPVGP----------DPAGIAVTPD  254 (391)
T ss_dssp             EEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEE--EETTTTE--EEEEEECCS----------SEEEEEECTT
T ss_pred             EEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEE--EECCCCe--EEEEEecCC----------CccEEEEccC
Confidence            4322211   223467788888877777763   455555  4433211  111111111          2578999999


Q ss_pred             CCeE-EEecCCCeEEEEeCCCceeeeecCcCCc
Q psy11885        247 YNTF-ATGGSDGYVNIWDGFNKKRLCQFHRYDT  278 (327)
Q Consensus       247 ~~~l-asgs~dg~i~iWd~~~~~~~~~~~~~~~  278 (327)
                      +++| ++++.|+.|++||+.+++.+..+..+..
T Consensus       255 g~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~  287 (391)
T 1l0q_A          255 GKKVYVALSFXNTVSVIDTATNTITATMAVGKN  287 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence            9987 6778999999999999988877755544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.2e-26  Score=201.27  Aligned_cols=203  Identities=19%  Similarity=0.230  Sum_probs=154.2

Q ss_pred             CCCCCCeeEEEEecC-CCcEEEEEECCCcEEEEECCCCe--E-EEEecCCCceeeEEEe-C--CceEEEEecCCcEEEEE
Q psy11885         12 SPPEDGITAVKFAPN-SNQFLLASSWDCNVSLYDITNNN--L-RLKYAHSDPVLDCCFQ-D--AVHSFSGGLDCTLKMFD   84 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~-~~~~l~s~~~d~~i~iwd~~~~~--~-~~~~~h~~~v~~~~~~-~--~~~~~sgs~Dg~i~vwd   84 (327)
                      ..|.+.|++++|+|+ ++.+|++++.|+.|++||+.+++  . .....|...|.+++|+ +  +..+++++.|+.|++||
T Consensus        52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d  131 (379)
T 3jrp_A           52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE  131 (379)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence            457889999999874 25799999999999999999986  2 3344588999999995 4  78999999999999999


Q ss_pred             cCCCc---eeeeecCCccEEEEEEeC-------------CCCEEEEEECCCeEEEEeCCCCce----eeeeeCC-CcE--
Q psy11885         85 FNTQT---ETVIGTHDQPIRAVEYSD-------------EVNCILTGSWDTSVKMWDPRSSRC----VGNYTQP-DKV--  141 (327)
Q Consensus        85 ~~~~~---~~~~~~h~~~V~~l~~~~-------------~~~~l~sgs~d~~i~lwdl~~~~~----~~~~~~~-~~~--  141 (327)
                      +....   ...+..|...|.+++|+|             +++.+++++.|+.|++||+++++.    ...+..+ ..+  
T Consensus       132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~  211 (379)
T 3jrp_A          132 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  211 (379)
T ss_dssp             CCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             cCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeE
Confidence            98763   234668999999999999             699999999999999999987653    2333332 234  


Q ss_pred             EEEecC---CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccc
Q psy11885        142 FTMSLC---GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM  218 (327)
Q Consensus       142 ~~~~~~---~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  218 (327)
                      +.++++   +..+++++.|+.|++||+++.......          .                      ....       
T Consensus       212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------~----------------------~~~~-------  252 (379)
T 3jrp_A          212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK----------T----------------------LLKE-------  252 (379)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE----------E----------------------ESSS-------
T ss_pred             EEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcccee----------e----------------------eecc-------
Confidence            455666   678999999999999998764310000          0                      0000       


Q ss_pred             eeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885        219 KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       219 ~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~  266 (327)
                          ..|         ..+|.+++|+|++++|++++.||.|++|++..
T Consensus       253 ----~~~---------~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          253 ----EKF---------PDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             ----SCC---------SSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             ----ccC---------CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence                000         01467888999999999988899999998763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=9.1e-26  Score=197.28  Aligned_cols=248  Identities=12%  Similarity=0.151  Sum_probs=159.6

Q ss_pred             CCCCCCeeEEEEecC-CCcEEEEEECCCcEEEEECCCC---------e-EEEEecCCCceeeEEEe-C--CceEEEEecC
Q psy11885         12 SPPEDGITAVKFAPN-SNQFLLASSWDCNVSLYDITNN---------N-LRLKYAHSDPVLDCCFQ-D--AVHSFSGGLD   77 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~-~~~~l~s~~~d~~i~iwd~~~~---------~-~~~~~~h~~~v~~~~~~-~--~~~~~sgs~D   77 (327)
                      ..|.+.|++++|+|. ++.+|++++.|+.|++||+.++         + ......|...|.+++|+ +  +..+++++.|
T Consensus        54 ~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  133 (351)
T 3f3f_A           54 RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND  133 (351)
T ss_dssp             ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence            357789999999994 2579999999999999999876         3 33445789999999995 4  7889999999


Q ss_pred             CcEEEEEcCCCcee-e-------------eecCCccEEEEEEeCC---CCEEEEEECCCeEEEEeCCCCce--eeeeeC-
Q psy11885         78 CTLKMFDFNTQTET-V-------------IGTHDQPIRAVEYSDE---VNCILTGSWDTSVKMWDPRSSRC--VGNYTQ-  137 (327)
Q Consensus        78 g~i~vwd~~~~~~~-~-------------~~~h~~~V~~l~~~~~---~~~l~sgs~d~~i~lwdl~~~~~--~~~~~~-  137 (327)
                      +.|++||+.+.... .             ...|...+.+++|+|+   +..+++++.|+.+.+|+...++.  +..+.. 
T Consensus       134 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h  213 (351)
T 3f3f_A          134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH  213 (351)
T ss_dssp             CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC
T ss_pred             CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC
Confidence            99999999865421 0             1257788999999997   89999999999998888877764  444443 


Q ss_pred             CCcEE--EEecCC----CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeE--EEEEc
Q psy11885        138 PDKVF--TMSLCG----EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRA--AVEYL  209 (327)
Q Consensus       138 ~~~~~--~~~~~~----~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~  209 (327)
                      ...+.  .+++++    +.+++++.|+.|++||+++............  ........+.......+...+..  .+..+
T Consensus       214 ~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
T 3f3f_A          214 KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT--NSNMFDNSADVDMDAQGRSDSNTEEKAELQ  291 (351)
T ss_dssp             CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------C
T ss_pred             CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccc--ceeccCCCcccccccccccccccceeeeec
Confidence            23344  455555    5799999999999999986532211100000  00000000110011111111110  11111


Q ss_pred             cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee
Q psy11885        210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ  272 (327)
Q Consensus       210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~  272 (327)
                      +..  .......+..|         ..+|++++|+|++++|++|+.||.|+|||+.+++.+..
T Consensus       292 ~~~--~~~~~~~~~~h---------~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          292 SNL--QVELLSEHDDH---------NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             CSE--EEEEEEEECTT---------SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred             ccc--cccEEEEEecc---------cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence            110  00111111112         22589999999999999999999999999988765443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.8e-25  Score=202.94  Aligned_cols=240  Identities=13%  Similarity=0.102  Sum_probs=173.3

Q ss_pred             CCCCCeeEEEEecCCCcE-EEEEECCCcEEEEECC--CCeEEEEe---cCCCceeeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885         13 PPEDGITAVKFAPNSNQF-LLASSWDCNVSLYDIT--NNNLRLKY---AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~-l~s~~~d~~i~iwd~~--~~~~~~~~---~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~   85 (327)
                      .|.+.|++++|+|++ .+ +++++.|+.|++||+.  +++.....   .|...|.+++|+ ++.++++|+.|+.|++|++
T Consensus       100 ~~~~~v~~~~~s~d~-~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDE-SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             CCCCCEEEEEECTTS-SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ccCCceEEEEEcCCC-CEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            355689999999965 56 5889999999999998  66643332   577889999995 7889999999999999999


Q ss_pred             CCCcee-----eeecCCccEEEEEEeCC---CCEEEEEECCCeEEEEeCCCCceeeeee-C-CCcE--EEEecCCCeEEE
Q psy11885         86 NTQTET-----VIGTHDQPIRAVEYSDE---VNCILTGSWDTSVKMWDPRSSRCVGNYT-Q-PDKV--FTMSLCGEKFVV  153 (327)
Q Consensus        86 ~~~~~~-----~~~~h~~~V~~l~~~~~---~~~l~sgs~d~~i~lwdl~~~~~~~~~~-~-~~~~--~~~~~~~~~~~~  153 (327)
                      ......     .+.+|...|.+++|+|+   +++|++|+.|++|++||+++++++..+. . ...+  ++++ ++..+++
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s  257 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS  257 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence            876532     45679999999999999   9999999999999999999988877633 2 2334  4455 7889999


Q ss_pred             EeCCCeEEEEECCCCccceeeecc-----------------------cceeeeEEeEEeeCCCceEEEe-ecCeEEEEEc
Q psy11885        154 GTAGRKVCIWDLRNMGYIMQRRES-----------------------SLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYL  209 (327)
Q Consensus       154 ~~~d~~v~iwD~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~  209 (327)
                      ++.|+.|++||+++++.+......                       ........+.+.|+++.+++++ .++.+.+|..
T Consensus       258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            999999999999987644322211                       1112345678888887777777 6677777655


Q ss_pred             --cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC------CCeEEEEeCC
Q psy11885        210 --DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS------DGYVNIWDGF  265 (327)
Q Consensus       210 --~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~------dg~i~iWd~~  265 (327)
                        ...... .....+..|          .++.+++|+|++.++++++.      +..|++|.+.
T Consensus       338 ~~~~~~~l-~~~~~~~~~----------~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          338 SEKQKGDL-ALKQIITFP----------YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             CSSSTTCE-EEEEEEECS----------SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             ccCCCCce-eeccEeccC----------CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence              211111 111112211          25789999996544444443      4568888754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.4e-25  Score=214.00  Aligned_cols=203  Identities=19%  Similarity=0.242  Sum_probs=156.6

Q ss_pred             CCCCCCeeEEEEecCC-CcEEEEEECCCcEEEEECCCCe---EEEEecCCCceeeEEEe-C--CceEEEEecCCcEEEEE
Q psy11885         12 SPPEDGITAVKFAPNS-NQFLLASSWDCNVSLYDITNNN---LRLKYAHSDPVLDCCFQ-D--AVHSFSGGLDCTLKMFD   84 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~-~~~l~s~~~d~~i~iwd~~~~~---~~~~~~h~~~v~~~~~~-~--~~~~~sgs~Dg~i~vwd   84 (327)
                      ..|.+.|++++|+|+. +.+|++|+.||+|++||+.+++   ......|..+|.+++|+ +  +..+++|+.||+|++||
T Consensus        50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwd  129 (753)
T 3jro_A           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE  129 (753)
T ss_dssp             CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEE
Confidence            4578899999999852 5799999999999999999886   23344689999999995 4  78999999999999999


Q ss_pred             cCCCc---eeeeecCCccEEEEEEeC-------------CCCEEEEEECCCeEEEEeCCCCc----eeeeeeC-CCcE--
Q psy11885         85 FNTQT---ETVIGTHDQPIRAVEYSD-------------EVNCILTGSWDTSVKMWDPRSSR----CVGNYTQ-PDKV--  141 (327)
Q Consensus        85 ~~~~~---~~~~~~h~~~V~~l~~~~-------------~~~~l~sgs~d~~i~lwdl~~~~----~~~~~~~-~~~~--  141 (327)
                      +.++.   ...+..|...|.+++|+|             +++.+++|+.||+|++||++++.    +...+.. ...+  
T Consensus       130 l~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~  209 (753)
T 3jro_A          130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  209 (753)
T ss_dssp             CCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             eecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEE
Confidence            98763   234678999999999999             58999999999999999998763    3344443 2334  


Q ss_pred             EEEecC---CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccc
Q psy11885        142 FTMSLC---GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM  218 (327)
Q Consensus       142 ~~~~~~---~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  218 (327)
                      +.++++   +..+++++.|+.|++||+++.........                                ...       
T Consensus       210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~--------------------------------~~~-------  250 (753)
T 3jro_A          210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL--------------------------------LKE-------  250 (753)
T ss_dssp             EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCB--------------------------------SSS-------
T ss_pred             EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEE--------------------------------ecc-------
Confidence            445566   67899999999999999886431000000                                000       


Q ss_pred             eeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885        219 KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       219 ~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~  266 (327)
                          ..|         ...|.+++|+|++++|++|+.||.|++|++..
T Consensus       251 ----~~~---------~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          251 ----EKF---------PDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             ----SCC---------SSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             ----CCC---------CCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence                001         01477899999999999999999999999763

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1e-24  Score=197.28  Aligned_cols=267  Identities=10%  Similarity=0.041  Sum_probs=190.5

Q ss_pred             CCeeEEEEecCCCcEEEEEE----CCC----cEEEEEC--CCCeEE---EEecCCCceeeEEEeC---------------
Q psy11885         16 DGITAVKFAPNSNQFLLASS----WDC----NVSLYDI--TNNNLR---LKYAHSDPVLDCCFQD---------------   67 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~----~d~----~i~iwd~--~~~~~~---~~~~h~~~v~~~~~~~---------------   67 (327)
                      ..|+..+|.+.+..++++|+    .||    +|+|||+  .+++..   ....|...+..+++..               
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            47788889887767888887    467    8999999  887743   2345766666555431               


Q ss_pred             CceEEEEecC------CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCC---eEEEEeCCCCceeeeeeCC
Q psy11885         68 AVHSFSGGLD------CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDT---SVKMWDPRSSRCVGNYTQP  138 (327)
Q Consensus        68 ~~~~~sgs~D------g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~---~i~lwdl~~~~~~~~~~~~  138 (327)
                      +..++.++.+      ++|++||+++.....+..|...|.+++|+|+|+.|++++.|+   .|++||++++++.......
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~  222 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP  222 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence            5566666554      799999998766677778999999999999999999999885   9999999998875433333


Q ss_pred             Cc--EEEEecCCCeEE-EEeCCC--eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCC
Q psy11885        139 DK--VFTMSLCGEKFV-VGTAGR--KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTG  212 (327)
Q Consensus       139 ~~--~~~~~~~~~~~~-~~~~d~--~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~  212 (327)
                      ..  ...++++|+.++ +++.++  .|.+||+++.+.. .  ..........+.++|+++.++.++. ++...++.++..
T Consensus       223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~--l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-Q--VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E--CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-e--CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence            33  456777888777 555554  5999999876531 1  1112223467788898887777765 455566666644


Q ss_pred             cccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCC---CeEEEEeCCCceeeeecCcCCcceEEEEECCCC
Q psy11885        213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD---GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDG  289 (327)
Q Consensus       213 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~d---g~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg  289 (327)
                      ....  . .+..+.         ..+.+++|+|||++|++++.+   ..|++||+.+++. ..+..+. .+.+++|||||
T Consensus       300 ~~~~--~-~l~~~~---------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg  365 (415)
T 2hqs_A          300 GGAP--Q-RITWEG---------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNG  365 (415)
T ss_dssp             SSCC--E-ECCCSS---------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTS
T ss_pred             CCCE--E-EEecCC---------CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCC
Confidence            3211  1 111111         146789999999999988764   5899999988765 3454444 78999999999


Q ss_pred             CEEEEEEccc
Q psy11885        290 NVLAIACSYN  299 (327)
Q Consensus       290 ~~la~~~~~~  299 (327)
                      ++|++++.+.
T Consensus       366 ~~l~~~s~~~  375 (415)
T 2hqs_A          366 TMVIYSSSQG  375 (415)
T ss_dssp             SEEEEEEEET
T ss_pred             CEEEEEEcCC
Confidence            9999998655

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=1.4e-24  Score=187.15  Aligned_cols=195  Identities=13%  Similarity=0.094  Sum_probs=136.1

Q ss_pred             CCCCeeEEEEecCC---CcEEEEEEC--------------------CCcEEEEECCC-CeE-EEEecCCCceeeEEEe--
Q psy11885         14 PEDGITAVKFAPNS---NQFLLASSW--------------------DCNVSLYDITN-NNL-RLKYAHSDPVLDCCFQ--   66 (327)
Q Consensus        14 ~~~~I~~i~fs~~~---~~~l~s~~~--------------------d~~i~iwd~~~-~~~-~~~~~h~~~v~~~~~~--   66 (327)
                      +.+.|++++|+|++   ++++++++.                    |+.|++|++.. ++. .....|...+..++|+  
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~  189 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV  189 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence            34578899999951   356666553                    88888888844 654 3445677777777773  


Q ss_pred             --CCceEEEEecCCcEEEEEcCCCce-eeeecCC---ccEEEEEEeCCCCEE------------EEEECCCeEEEEeCCC
Q psy11885         67 --DAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHD---QPIRAVEYSDEVNCI------------LTGSWDTSVKMWDPRS  128 (327)
Q Consensus        67 --~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~---~~V~~l~~~~~~~~l------------~sgs~d~~i~lwdl~~  128 (327)
                        ++..++|||.|++||+||+.+++. ..+.+|.   ..+.+++|+|+|+++            ++|+.|++|++||+.+
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t  269 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT  269 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred             CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence              457899999999999999998875 3455443   367788999999876            6788999999999999


Q ss_pred             Cceeeeee-----C-CCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecC
Q psy11885        129 SRCVGNYT-----Q-PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG  202 (327)
Q Consensus       129 ~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (327)
                      ++++..+.     . .......+..+..+++++.|++|+|||+++++.+..                             
T Consensus       270 gk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-----------------------------  320 (356)
T 2w18_A          270 TLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-----------------------------  320 (356)
T ss_dssp             TEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEE-----------------------------
T ss_pred             CEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEE-----------------------------
Confidence            98876542     1 112444455577899999999999999987542100                             


Q ss_pred             eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeC
Q psy11885        203 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       203 ~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~  264 (327)
                            +             ..|..        ..+.+++|||||++||+|+.|++|||||.
T Consensus       321 ------L-------------~gH~~--------~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          321 ------L-------------PPVSD--------QHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ------E-------------CCC----------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             ------e-------------cCCCC--------CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence                  0             00100        01335899999999999999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2e-24  Score=190.26  Aligned_cols=226  Identities=10%  Similarity=0.058  Sum_probs=165.1

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECC---------CCeEE-E-EecCCCceeeEEE-e--CCceEEEEecCCcEE
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDIT---------NNNLR-L-KYAHSDPVLDCCF-Q--DAVHSFSGGLDCTLK   81 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~---------~~~~~-~-~~~h~~~v~~~~~-~--~~~~~~sgs~Dg~i~   81 (327)
                      ..|+++.|+|.    +++++.|++|++|+..         +++.. . ...|.++|.+++| +  ++.++++|+.|++|+
T Consensus        77 ~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~  152 (343)
T 3lrv_A           77 PNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIG  152 (343)
T ss_dssp             ECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEE
T ss_pred             CCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEE
Confidence            46777888884    8999999999999765         44422 2 2256788999999 4  678899999999999


Q ss_pred             EEEcCCCceeee--ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee-eeeeC--CCcE--EEEecCCCeEEEE
Q psy11885         82 MFDFNTQTETVI--GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV-GNYTQ--PDKV--FTMSLCGEKFVVG  154 (327)
Q Consensus        82 vwd~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~-~~~~~--~~~~--~~~~~~~~~~~~~  154 (327)
                      +||++++.....  ..|...|.+++|+|++.+|++|+.|+.|++||+++++.. ..+..  ...+  +.+++++..++++
T Consensus       153 ~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~  232 (343)
T 3lrv_A          153 FQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVE  232 (343)
T ss_dssp             EEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEE
T ss_pred             EEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEE
Confidence            999998776432  345668999999999999999999999999999998876 55554  3344  4456678889999


Q ss_pred             eCCCeEEEEECCCCccceeeec---ccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeeeeeccC
Q psy11885        155 TAGRKVCIWDLRNMGYIMQRRE---SSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKED  230 (327)
Q Consensus       155 ~~d~~v~iwD~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~  230 (327)
                      + ++.|++||+++.+.+.....   +.......++++.|+++.+++++. ++.+.+|.++.....    +.         
T Consensus       233 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~----~~---------  298 (343)
T 3lrv_A          233 C-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN----WT---------  298 (343)
T ss_dssp             E-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS----EE---------
T ss_pred             e-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc----eE---------
Confidence            8 55999999998764322211   111111146888888888888777 788787666543211    10         


Q ss_pred             CeeeEEEeeEEEEec---CCCeEEEecCCCeEEEEe
Q psy11885        231 GIEKIYPVNAISFHQ---EYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       231 ~~~~~~~v~~v~~sp---d~~~lasgs~dg~i~iWd  263 (327)
                          ..++..++|+|   +...|++++.||.++++-
T Consensus       299 ----~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          299 ----KDEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             ----EEEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             ----ecCceeEecCccccccceeEEEecCCceEEEE
Confidence                02567888998   889999999999998875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=5.6e-24  Score=193.18  Aligned_cols=195  Identities=22%  Similarity=0.302  Sum_probs=146.7

Q ss_pred             EEEecCCCceeeEEEeC--CceEEEEecCCcEEEEEcCC----------Cc-eeeeecCCccEEEEEEeCCCC-EEEEEE
Q psy11885         51 RLKYAHSDPVLDCCFQD--AVHSFSGGLDCTLKMFDFNT----------QT-ETVIGTHDQPIRAVEYSDEVN-CILTGS  116 (327)
Q Consensus        51 ~~~~~h~~~v~~~~~~~--~~~~~sgs~Dg~i~vwd~~~----------~~-~~~~~~h~~~V~~l~~~~~~~-~l~sgs  116 (327)
                      .....|.+.|.+++|++  +..+++++.||.|++||+.+          .. ...+..|...|.+++|+|++. .|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            34457999999999964  46888999999999999976          22 235678999999999999988 999999


Q ss_pred             CCCeEEEEeCCCCce-------eeeeeC-CCcEE--EEec-CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEE
Q psy11885        117 WDTSVKMWDPRSSRC-------VGNYTQ-PDKVF--TMSL-CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRC  185 (327)
Q Consensus       117 ~d~~i~lwdl~~~~~-------~~~~~~-~~~~~--~~~~-~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~  185 (327)
                      .||+|++||++++..       ...+.. ...+.  .+++ .+..+++++.|+.|++||+++....     ...      
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-----~~~------  270 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-----KPS------  270 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-----SCS------
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-----cce------
Confidence            999999999987432       122322 22344  4455 4567899999999999999864210     000      


Q ss_pred             eEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC-eEEEecCCCeEEEEeC
Q psy11885        186 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGGSDGYVNIWDG  264 (327)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~-~lasgs~dg~i~iWd~  264 (327)
                                                        ..+..|.         .+|++++|+|+++ +|++|+.||+|++||+
T Consensus       271 ----------------------------------~~~~~~~---------~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~  307 (430)
T 2xyi_A          271 ----------------------------------HTVDAHT---------AEVNCLSFNPYSEFILATGSADKTVALWDL  307 (430)
T ss_dssp             ----------------------------------EEEECCS---------SCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             ----------------------------------eEeecCC---------CCeEEEEeCCCCCCEEEEEeCCCeEEEEeC
Confidence                                              0000111         1478999999997 5889999999999999


Q ss_pred             CC-ceeeeecCcCCcceEEEEECCCCC-EEEEEEccc
Q psy11885        265 FN-KKRLCQFHRYDTGITSLCFSYDGN-VLAIACSYN  299 (327)
Q Consensus       265 ~~-~~~~~~~~~~~~~v~~l~fspdg~-~la~~~~~~  299 (327)
                      ++ ...+..+..|...|++++|+|+++ +||+++.++
T Consensus       308 ~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~  344 (430)
T 2xyi_A          308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR  344 (430)
T ss_dssp             TCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             CCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence            87 455777778888999999999996 577777654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=3.5e-22  Score=180.92  Aligned_cols=269  Identities=9%  Similarity=0.037  Sum_probs=183.5

Q ss_pred             CCCeeEEE---EecCCCcEEEE-------------EECCC--cEEEEECCCC--eEEEEecCCCceeeEEEeC-CceEEE
Q psy11885         15 EDGITAVK---FAPNSNQFLLA-------------SSWDC--NVSLYDITNN--NLRLKYAHSDPVLDCCFQD-AVHSFS   73 (327)
Q Consensus        15 ~~~I~~i~---fs~~~~~~l~s-------------~~~d~--~i~iwd~~~~--~~~~~~~h~~~v~~~~~~~-~~~~~s   73 (327)
                      ..++..++   |+|+++..+++             ++.++  .|..||..++  +..........+.+++|++ +..+++
T Consensus        60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  139 (433)
T 3bws_A           60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIP  139 (433)
T ss_dssp             TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEE
T ss_pred             CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEE
Confidence            34667778   88854333222             22333  3444444445  3333344445667888964 455667


Q ss_pred             EecCCcEEEEEcCCCceee------eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC---cEEEE
Q psy11885         74 GGLDCTLKMFDFNTQTETV------IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD---KVFTM  144 (327)
Q Consensus        74 gs~Dg~i~vwd~~~~~~~~------~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~---~~~~~  144 (327)
                      ++.|+.|++||+.++....      +..|...|.+++|+++++.+++++.|+.|++||+++++.+..+..+.   ...++
T Consensus       140 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  219 (433)
T 3bws_A          140 LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLY  219 (433)
T ss_dssp             BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEE
T ss_pred             eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEE
Confidence            7788999999998876532      23688899999999999999999999999999999988887776432   23566


Q ss_pred             ecCCCeEEE-EeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecC------eEEEEEccCCccccc
Q psy11885        145 SLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG------RAAVEYLDTGPEMQK  217 (327)
Q Consensus       145 ~~~~~~~~~-~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~  217 (327)
                      ++++..+++ ++.++.|++||+++++.+.....   ......+++.|+++.+++++...      +..+..|+.....  
T Consensus       220 ~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--  294 (433)
T 3bws_A          220 DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK---IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK--  294 (433)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTTEEEEECCC---CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--
T ss_pred             cCCCCEEEEEecCCCcEEEEECCCCcEEEEecC---CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc--
Confidence            777777754 45799999999987654322211   22356778888887777766421      2334445543221  


Q ss_pred             ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeE-EEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885        218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~l-asgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~  296 (327)
                      .....          .+...+.+++|+|+++.+ ++++.|+.|++||..+++.+..+. +...+.+++|+|||++|++++
T Consensus       295 ~~~~~----------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~  363 (433)
T 3bws_A          295 LIDTI----------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSC  363 (433)
T ss_dssp             EEEEE----------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEE
T ss_pred             EEeec----------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEe
Confidence            11111          112246789999999754 677899999999999888777664 556789999999999999987


Q ss_pred             ccc
Q psy11885        297 SYN  299 (327)
Q Consensus       297 ~~~  299 (327)
                      ...
T Consensus       364 ~~~  366 (433)
T 3bws_A          364 RGP  366 (433)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.92  E-value=3.9e-24  Score=192.03  Aligned_cols=241  Identities=11%  Similarity=0.106  Sum_probs=137.3

Q ss_pred             CCCCeeEEEEe---cCCCcEEEEEECCCcEEEEECCCC--------e--EEEEecCCCceeeEEEe--------------
Q psy11885         14 PEDGITAVKFA---PNSNQFLLASSWDCNVSLYDITNN--------N--LRLKYAHSDPVLDCCFQ--------------   66 (327)
Q Consensus        14 ~~~~I~~i~fs---~~~~~~l~s~~~d~~i~iwd~~~~--------~--~~~~~~h~~~v~~~~~~--------------   66 (327)
                      -+....+++|.   |+...+ ++++.|+.|.+|+....        .  ......+..++..+.+.              
T Consensus        14 l~~~p~~~~w~~~~~~~~~l-~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (393)
T 4gq1_A           14 LNVRPYTTTWCSQSPSCSNL-LAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDG   92 (393)
T ss_dssp             TTCCEEEEEECTTSGGGTTE-EEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC------
T ss_pred             CCCCCeEEEEeCCCCCCCCE-EEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCc
Confidence            34566778884   433344 44556889999986321        1  11122344444444331              


Q ss_pred             -------CCceEEEEecCCcEEEEEcCCCcee------eeecCCccEEEEEEeC--------CCCEEEEEECCCeEEEEe
Q psy11885         67 -------DAVHSFSGGLDCTLKMFDFNTQTET------VIGTHDQPIRAVEYSD--------EVNCILTGSWDTSVKMWD  125 (327)
Q Consensus        67 -------~~~~~~sgs~Dg~i~vwd~~~~~~~------~~~~h~~~V~~l~~~~--------~~~~l~sgs~d~~i~lwd  125 (327)
                             ++..+++|+.|++||+||++.+...      .+.+|.+.|++|+|+|        |+++|+||+.|++||+||
T Consensus        93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A           93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR  172 (393)
T ss_dssp             ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred             ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence                   2346889999999999999877532      2467999999999997        789999999999999999


Q ss_pred             CCCCceeee-eeCCCcEEE--EecCC-CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeec
Q psy11885        126 PRSSRCVGN-YTQPDKVFT--MSLCG-EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE  201 (327)
Q Consensus       126 l~~~~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (327)
                      ++++.++.. +.....+.+  +++.+ ..+++++.|++|++||+++.+...............+          ..... 
T Consensus       173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~----------~s~~~-  241 (393)
T 4gq1_A          173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL----------LTLNT-  241 (393)
T ss_dssp             EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS----------EEEES-
T ss_pred             CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE----------Eeccc-
Confidence            988765544 344444554  44444 3699999999999999987643211100000000000          00000 


Q ss_pred             CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe-cCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcce
Q psy11885        202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH-QEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI  280 (327)
Q Consensus       202 ~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s-pd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v  280 (327)
                                ...  ........|         ...+.+++|+ ||++.|++++.|+++++||+..++....+..+...+
T Consensus       242 ----------~~~--~~~~~~~~~---------~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~  300 (393)
T 4gq1_A          242 ----------LPL--VNTCHSSGI---------ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKL  300 (393)
T ss_dssp             ----------GGG--C------CC---------SSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------
T ss_pred             ----------ccc--eeeeecccc---------cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcc
Confidence                      000  000000111         1246788887 899999999999999999998776665555444444


Q ss_pred             EEEEECC
Q psy11885        281 TSLCFSY  287 (327)
Q Consensus       281 ~~l~fsp  287 (327)
                      ..+.++|
T Consensus       301 ~~~~~~~  307 (393)
T 4gq1_A          301 GPKNLLP  307 (393)
T ss_dssp             ---CCSC
T ss_pred             ccEEEcc
Confidence            4444443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=6.6e-21  Score=167.50  Aligned_cols=273  Identities=12%  Similarity=0.089  Sum_probs=189.3

Q ss_pred             CCCeeEEEEecCCCcEEEEEEC-------CCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEc
Q psy11885         15 EDGITAVKFAPNSNQFLLASSW-------DCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDF   85 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~   85 (327)
                      ...+..++|+|++ +++++++.       ++.|.+||..+++..........+..++++ ++..++ ++..++.|.+||.
T Consensus        40 ~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQE-NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTT-TEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCC-CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            3578899999965 55565553       568999999998876665555567788885 666555 5555799999999


Q ss_pred             CCCcee-eeecCCc---------cEEEEEEeCCCCEEEEEE--CCCeEEEEeCCCCceeeeeeC-C--CcEEEEecCCCe
Q psy11885         86 NTQTET-VIGTHDQ---------PIRAVEYSDEVNCILTGS--WDTSVKMWDPRSSRCVGNYTQ-P--DKVFTMSLCGEK  150 (327)
Q Consensus        86 ~~~~~~-~~~~h~~---------~V~~l~~~~~~~~l~sgs--~d~~i~lwdl~~~~~~~~~~~-~--~~~~~~~~~~~~  150 (327)
                      ++++.. .+..+..         .+..++|+|+++.++.++  .++.|.+||+++++.+..+.. .  ...+.++++++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            887653 3333221         268899999999888776  478999999999988877762 2  234677888999


Q ss_pred             EEEEeCCCeEEEEECCCCccceeeeccc--ceeeeEEeEEeeCCCceEEEeec-CeEEEEEccCCcccccceeeeeeeee
Q psy11885        151 FVVGTAGRKVCIWDLRNMGYIMQRRESS--LKFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRI  227 (327)
Q Consensus       151 ~~~~~~d~~v~iwD~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~h~~  227 (327)
                      ++++..++.|.+||+++.+.........  .......+++.|+++.++++... +.+.++....+..    ...+..   
T Consensus       199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~---  271 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI----LAKVAA---  271 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE----EEEEEC---
T ss_pred             EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----EEEEEc---
Confidence            9999999999999998876443222111  11224557888888766555543 4444433322221    111110   


Q ss_pred             ccCCeeeEEEeeEEEEecCCCeEE-EecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        228 KEDGIEKIYPVNAISFHQEYNTFA-TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       228 ~~~~~~~~~~v~~v~~spd~~~la-sgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      .        ....++|+|++++++ +...++.|.+||..+++.+..+... ..+.+++|+|||++|+++.........
T Consensus       272 ~--------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~~~~  340 (353)
T 3vgz_A          272 P--------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQKSTKQQ  340 (353)
T ss_dssp             S--------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECCCBTTB
T ss_pred             C--------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcccccccc
Confidence            0        124689999999655 5557899999999999888777543 367899999999988888766544433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=4.3e-22  Score=192.60  Aligned_cols=273  Identities=10%  Similarity=0.040  Sum_probs=192.7

Q ss_pred             CCCeeEEEEecCCCcEEEEEEC-CC-----cEEEEECCCCeEEEEec-CC------------------------CceeeE
Q psy11885         15 EDGITAVKFAPNSNQFLLASSW-DC-----NVSLYDITNNNLRLKYA-HS------------------------DPVLDC   63 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~-h~------------------------~~v~~~   63 (327)
                      ...|++++|+|+ +++|++++. |+     .|++||+.+++...... +.                        ..+.++
T Consensus        36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            457999999996 578898888 88     89999999988654443 22                        236788


Q ss_pred             EEe-CCceEEEEecCCcEEEEEcCCC---ceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC
Q psy11885         64 CFQ-DAVHSFSGGLDCTLKMFDFNTQ---TETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD  139 (327)
Q Consensus        64 ~~~-~~~~~~sgs~Dg~i~vwd~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~  139 (327)
                      +|+ ++.++++++. +.|++||+.++   ....+..|...+..++|+|||++|+.++ ++.|++||+.+++.........
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence            995 7788888875 99999999987   5556677888899999999999999987 4699999999887654433221


Q ss_pred             -------------------cEEEEecCCCeEEEEeCCC---------------------------------eEEEEECCC
Q psy11885        140 -------------------KVFTMSLCGEKFVVGTAGR---------------------------------KVCIWDLRN  167 (327)
Q Consensus       140 -------------------~~~~~~~~~~~~~~~~~d~---------------------------------~v~iwD~~~  167 (327)
                                         ....++++|+.|++++.|+                                 .|.+||+.+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence                               3467888999999887665                                 788999987


Q ss_pred             -CccceeeecccceeeeEEeEEeeCCCceEEEeec---CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        168 -MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE---GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       168 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                       .+................+++ |+++.+++++.+   ....++.|+......  ...+..+..     .....+.+++|
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~-----~~~~~~~~~~~  344 (741)
T 2ecf_A          273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVLAHETSP-----TWVPLHNSLRF  344 (741)
T ss_dssp             TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--EEEEEEECS-----SCCCCCSCCEE
T ss_pred             CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--EEEEEcCCC-----CcCCcCCceEE
Confidence             653211111112234567788 998887776542   345666666543211  111111110     00002457899


Q ss_pred             ecCCCeEEEecCCCeEEEEeCC-CceeeeecCcCCcceEEE-EECCCCCEEEEEEccc
Q psy11885        244 HQEYNTFATGGSDGYVNIWDGF-NKKRLCQFHRYDTGITSL-CFSYDGNVLAIACSYN  299 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd~~-~~~~~~~~~~~~~~v~~l-~fspdg~~la~~~~~~  299 (327)
                      +|||+++++++.||.++||.+. +++ +..+..+...+.++ +|||||+.|++.+..+
T Consensus       345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~  401 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE  401 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred             CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence            9999999999999988888654 344 66777777778887 6999999887766543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=1.3e-21  Score=176.82  Aligned_cols=235  Identities=10%  Similarity=-0.003  Sum_probs=172.3

Q ss_pred             CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCC---cEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEE
Q psy11885         38 CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDC---TLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL  113 (327)
Q Consensus        38 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg---~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  113 (327)
                      +.|++||+.++.......|...+.+++|+ ++.++++++.|+   .|++||+.+++...+..|...+.+++|+|||+.|+
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la  238 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  238 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEE
Confidence            79999999876666677888999999995 788999999885   99999999888777777888999999999999887


Q ss_pred             -EEECCCe--EEEEeCCCCceeeeeeCCCc--EEEEecCCCeEEEEeC-CC--eEEEEECCCCccceeeecccceeeeEE
Q psy11885        114 -TGSWDTS--VKMWDPRSSRCVGNYTQPDK--VFTMSLCGEKFVVGTA-GR--KVCIWDLRNMGYIMQRRESSLKFQTRC  185 (327)
Q Consensus       114 -sgs~d~~--i~lwdl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-d~--~v~iwD~~~~~~~~~~~~~~~~~~~~~  185 (327)
                       +++.|+.  |++||++++++.........  ...+++++..+++++. ++  .|.+||+.+.+.. ..  .........
T Consensus       239 ~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l--~~~~~~~~~  315 (415)
T 2hqs_A          239 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RI--TWEGSQNQD  315 (415)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-EC--CCSSSEEEE
T ss_pred             EEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EE--ecCCCcccC
Confidence             6666654  99999998876433222323  3566778888888776 44  6888898876521 11  111123456


Q ss_pred             eEEeeCCCceEEEeec-CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCC---eEEE
Q psy11885        186 IKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG---YVNI  261 (327)
Q Consensus       186 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg---~i~i  261 (327)
                      ++++|+++.++.++.+ +...++.|+......   ..+..+.          .+.+++|+|||+.|++++.++   .|++
T Consensus       316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---~~l~~~~----------~~~~~~~spdg~~l~~~s~~~~~~~l~~  382 (415)
T 2hqs_A          316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLSSTF----------LDETPSLAPNGTMVIYSSSQGMGSVLNL  382 (415)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCE---EECCCSS----------SCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred             eEECCCCCEEEEEECcCCceEEEEEECCCCCE---EEecCCC----------CcCCeEEcCCCCEEEEEEcCCCccEEEE
Confidence            7888988877777654 345555666443211   1111110          367899999999999988876   7999


Q ss_pred             EeCCCceeeeecCcCCcceEEEEECCCC
Q psy11885        262 WDGFNKKRLCQFHRYDTGITSLCFSYDG  289 (327)
Q Consensus       262 Wd~~~~~~~~~~~~~~~~v~~l~fspdg  289 (327)
                      ||+. ++.+..+..+...|.+++|||.-
T Consensus       383 ~d~~-g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          383 VSTD-GRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             EETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred             EECC-CCcEEEeeCCCCCCcCCcccccc
Confidence            9986 55677788888899999999963

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=5e-22  Score=169.66  Aligned_cols=251  Identities=10%  Similarity=0.014  Sum_probs=174.4

Q ss_pred             EEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCC-Cceeee-ecC-CccEEEEEEeCC
Q psy11885         33 ASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT-QTETVI-GTH-DQPIRAVEYSDE  108 (327)
Q Consensus        33 s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~-~~~~~~-~~h-~~~V~~l~~~~~  108 (327)
                      .++.|++|++||+.+++......|...+.+++|+ ++.++++++ ++.|++||+++ +....+ ..| ...+.+++|+|+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd   95 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD   95 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence            3467899999999999987777888999999996 677777776 88999999988 665433 344 467899999999


Q ss_pred             CCEEEEEEC--C--CeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEE-EEeCCCeEEEEECC--CCccceeeecccc
Q psy11885        109 VNCILTGSW--D--TSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFV-VGTAGRKVCIWDLR--NMGYIMQRRESSL  179 (327)
Q Consensus       109 ~~~l~sgs~--d--~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~d~~v~iwD~~--~~~~~~~~~~~~~  179 (327)
                      ++.|++++.  +  ..|..|++.+++. ..+.....+  ..++++++.++ ++..++.++||+++  +... ..  ....
T Consensus        96 g~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~--~~~~  171 (297)
T 2ojh_A           96 GALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TR--LTHG  171 (297)
T ss_dssp             SSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EE--CCCS
T ss_pred             CCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eE--cccC
Confidence            999999983  3  3455555555543 333332223  45677788776 67789999999864  2221 11  1112


Q ss_pred             eeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCC--
Q psy11885        180 KFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD--  256 (327)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~d--  256 (327)
                      .....++.++|+++.+++++. ++...++.++.....   ...+..|         ...+.+++|+|++++|++++.+  
T Consensus       172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~  239 (297)
T 2ojh_A          172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS---VERITDS---------AYGDWFPHPSPSGDKVVFVSYDAD  239 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---EEECCCC---------SEEEEEEEECTTSSEEEEEEEETT
T ss_pred             CCccccceECCCCCEEEEEecCCCCccEEEECCCCCC---cEEEecC---------CcccCCeEECCCCCEEEEEEcCCC
Confidence            223467788888877766653 667777766532211   1111111         1257789999999999988765  


Q ss_pred             ---------CeEEEEeCCCcee--eeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        257 ---------GYVNIWDGFNKKR--LCQFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       257 ---------g~i~iWd~~~~~~--~~~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                               +.|++||+.+++.  +..+..+...+.+++|||||++|++++.+..
T Consensus       240 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  294 (297)
T 2ojh_A          240 VFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV  294 (297)
T ss_dssp             CCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred             CCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence                     5699999987754  3344466778899999999999999987643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=2e-21  Score=181.24  Aligned_cols=262  Identities=13%  Similarity=0.060  Sum_probs=181.8

Q ss_pred             EEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEc--CCCcee-eeecCC
Q psy11885         22 KFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF--NTQTET-VIGTHD   97 (327)
Q Consensus        22 ~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~--~~~~~~-~~~~h~   97 (327)
                      +|+|+ +.++++++.|++|.+||..++++.........+..++|+ ++.++++++.|++|++||+  .+.+.. .+. +.
T Consensus       144 ~~~p~-~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g  221 (543)
T 1nir_A          144 DLDLP-NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG  221 (543)
T ss_dssp             CCCGG-GEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred             ccCCC-CEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence            38884 578888999999999999999876555422337888895 8889999999999999999  565443 333 44


Q ss_pred             ccEEEEEEeC----CCCEEEEEEC-CCeEEEEeCCCCceeeeeeCC-----------C-cE--EEEecCCCe-EEEEeCC
Q psy11885         98 QPIRAVEYSD----EVNCILTGSW-DTSVKMWDPRSSRCVGNYTQP-----------D-KV--FTMSLCGEK-FVVGTAG  157 (327)
Q Consensus        98 ~~V~~l~~~~----~~~~l~sgs~-d~~i~lwdl~~~~~~~~~~~~-----------~-~~--~~~~~~~~~-~~~~~~d  157 (327)
                      ..+..++|+|    +|++++++++ +++|.+||..++++++.+...           . .+  +.+++++.. +++...+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            5679999999    9999999875 899999999999988876542           1 23  334554544 5566788


Q ss_pred             CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      ++|.+||..+.+.+..... ........+.+.|+++.+++++ .++.+.++....+.....+......|...        
T Consensus       302 g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~--------  372 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR--------  372 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT--------
T ss_pred             CeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC--------
Confidence            9999999987653321111 1111234567888887665544 46677774444332211110000011110        


Q ss_pred             EeeEEEEecC-CCeEEEec-CCCeEEEEeCCC-------ceeeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885        237 PVNAISFHQE-YNTFATGG-SDGYVNIWDGFN-------KKRLCQFHRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       237 ~v~~v~~spd-~~~lasgs-~dg~i~iWd~~~-------~~~~~~~~~~~~~v~~l~fspdg~~la~~~  296 (327)
                       ...+ ++|+ +..+++++ .|++|.+||..+       .+.++++..+...+..++|||||++|++++
T Consensus       373 -g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          373 -GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             -CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             -Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence             1112 4787 66677775 589999999988       788888888877788999999999999986

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=8.3e-21  Score=177.08  Aligned_cols=269  Identities=11%  Similarity=0.062  Sum_probs=182.5

Q ss_pred             eeEEEEecCCCcEEEEEECCCcEEEEEC--CCCeEEEEecCCCceeeEEEe-----CCceEEEEe-cCCcEEEEEcCCCc
Q psy11885         18 ITAVKFAPNSNQFLLASSWDCNVSLYDI--TNNNLRLKYAHSDPVLDCCFQ-----DAVHSFSGG-LDCTLKMFDFNTQT   89 (327)
Q Consensus        18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~h~~~v~~~~~~-----~~~~~~sgs-~Dg~i~vwd~~~~~   89 (327)
                      +..++|+|+ +++|++++.|++|++||+  .++++.....+...+..++|+     ++.++++++ .+++|.+||..+.+
T Consensus       181 ~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            889999995 579999999999999999  777765555566677899995     688888887 48999999998876


Q ss_pred             ee-eeec----------C-CccEEEEEEeCCCCE-EEEEECCCeEEEEeCCCCceee--eeeCC--CcEEEEecCCCeEE
Q psy11885         90 ET-VIGT----------H-DQPIRAVEYSDEVNC-ILTGSWDTSVKMWDPRSSRCVG--NYTQP--DKVFTMSLCGEKFV  152 (327)
Q Consensus        90 ~~-~~~~----------h-~~~V~~l~~~~~~~~-l~sgs~d~~i~lwdl~~~~~~~--~~~~~--~~~~~~~~~~~~~~  152 (327)
                      .. .+..          | ...+..+.+++++.. +++...+++|.+||+.+.+.+.  .+...  .....+++++++++
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~  339 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM  339 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence            53 2322          2 236889999997765 5566778999999998866544  33322  22467788888776


Q ss_pred             EE-eCCCeEEEEECCCCccceeeecccceeeeEEeE-EeeCCCc-eEEEe-ecCeEEEEEccCCcc---cccceeeeeee
Q psy11885        153 VG-TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK-CFPNKQG-YVLSS-IEGRAAVEYLDTGPE---MQKMKYAFKCH  225 (327)
Q Consensus       153 ~~-~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~i~~~~~~~~---~~~~~~~~~~h  225 (327)
                      ++ ..+++|.+||+++++..........+...+... ++|+... ++++. .++.+.++..+....   ..+....+..|
T Consensus       340 va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~  419 (543)
T 1nir_A          340 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ  419 (543)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             EEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence            55 468999999999876543222211111111122 2444333 33333 346666655443111   01222222222


Q ss_pred             eeccCCeeeEEEeeEEEEecCCCeEEEec-------CCCeEEEEeCCCceee-eec--------CcCCcceEEEEECCCC
Q psy11885        226 RIKEDGIEKIYPVNAISFHQEYNTFATGG-------SDGYVNIWDGFNKKRL-CQF--------HRYDTGITSLCFSYDG  289 (327)
Q Consensus       226 ~~~~~~~~~~~~v~~v~~spd~~~lasgs-------~dg~i~iWd~~~~~~~-~~~--------~~~~~~v~~l~fspdg  289 (327)
                      .         ..+..++|||+++.|++++       .+++|.+||+.+++.. ..+        ..+...+..++|+|||
T Consensus       420 g---------~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g  490 (543)
T 1nir_A          420 G---------GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG  490 (543)
T ss_dssp             C---------SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred             C---------CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence            1         1245799999999999987       2779999999988766 332        3445679999999999


Q ss_pred             CEEEEEE
Q psy11885        290 NVLAIAC  296 (327)
Q Consensus       290 ~~la~~~  296 (327)
                      ++|.++.
T Consensus       491 ~~~~~s~  497 (543)
T 1nir_A          491 DEVWFSV  497 (543)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEe
Confidence            9999875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=7e-21  Score=166.44  Aligned_cols=264  Identities=10%  Similarity=0.077  Sum_probs=169.7

Q ss_pred             EEEEEECCCcEEEEECC-CCe--EEEEecCCCceeeEEEe-CCceEEEEecC-CcEEEEEcC--CCceee---eecCCcc
Q psy11885         30 FLLASSWDCNVSLYDIT-NNN--LRLKYAHSDPVLDCCFQ-DAVHSFSGGLD-CTLKMFDFN--TQTETV---IGTHDQP   99 (327)
Q Consensus        30 ~l~s~~~d~~i~iwd~~-~~~--~~~~~~h~~~v~~~~~~-~~~~~~sgs~D-g~i~vwd~~--~~~~~~---~~~h~~~   99 (327)
                      ++++++.|+.|++||+. +++  ......+...+.+++|+ ++..+++++.+ +.|++|+++  ++....   +..+. .
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence            44444779999999995 343  34445677788899995 67778888876 999999997  444322   22333 7


Q ss_pred             EEEEEEeCCCCEEEEEEC-CCeEEEEeCC---CCceeeeeeCCC--cEEEEecCCCeEEEEe-CCCeEEEEECCC-Cccc
Q psy11885        100 IRAVEYSDEVNCILTGSW-DTSVKMWDPR---SSRCVGNYTQPD--KVFTMSLCGEKFVVGT-AGRKVCIWDLRN-MGYI  171 (327)
Q Consensus       100 V~~l~~~~~~~~l~sgs~-d~~i~lwdl~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~d~~v~iwD~~~-~~~~  171 (327)
                      +..++|+|+++.+++++. ++.|.+||+.   +.+.+..+....  ..+.++++++.+++++ .++.|++||+++ .+..
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            889999999998877765 8899999994   334444444332  3356777888888776 889999999986 3321


Q ss_pred             ee---eecccceeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885        172 MQ---RRESSLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY  247 (327)
Q Consensus       172 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~  247 (327)
                      ..   .........+..+.+.|+++.++++. .++.+.++.++....  ............ ........+..++|+|++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g--~~~~~~~~~~~~-~~~~~~~~~~~i~~s~dg  242 (343)
T 1ri6_A          166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG--NIECVQTLDMMP-ENFSDTRWAADIHITPDG  242 (343)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS--CCEEEEEEECSC-TTCCSCCCEEEEEECTTS
T ss_pred             eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC--cEEEEeeccccC-ccccccCCccceEECCCC
Confidence            11   01111112346678888877555544 566666655542211  111000000000 000001135579999999


Q ss_pred             CeEE-EecCCCeEEEEeCC----CceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        248 NTFA-TGGSDGYVNIWDGF----NKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       248 ~~la-sgs~dg~i~iWd~~----~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      ++|+ +++.++.|++||+.    +.+.+..+..+.. +.+++|+|||++|++++..
T Consensus       243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~  297 (343)
T 1ri6_A          243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQK  297 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTT
T ss_pred             CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCC
Confidence            8876 55678999999987    2344444443333 7899999999999988753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=9.7e-21  Score=165.25  Aligned_cols=267  Identities=11%  Similarity=0.077  Sum_probs=174.0

Q ss_pred             EEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEEec-CCcEEEEEcCCCce--eeeec
Q psy11885         21 VKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGL-DCTLKMFDFNTQTE--TVIGT   95 (327)
Q Consensus        21 i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~-Dg~i~vwd~~~~~~--~~~~~   95 (327)
                      ..|.++++..+++.+.++.|++||..++++.... .+...+ .++|+ ++.++++++. ++.|.+||+.++..  ..+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            3566666667888888999999999998865443 344455 88885 6776776655 89999999988764  34445


Q ss_pred             CCccEEEEEEeCCCCEEEEEECCC---eEEEEeCCCCceeeeeeCCCc--EEEEecCCCeEEEE-eCCCe-EEEEECCCC
Q psy11885         96 HDQPIRAVEYSDEVNCILTGSWDT---SVKMWDPRSSRCVGNYTQPDK--VFTMSLCGEKFVVG-TAGRK-VCIWDLRNM  168 (327)
Q Consensus        96 h~~~V~~l~~~~~~~~l~sgs~d~---~i~lwdl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~d~~-v~iwD~~~~  168 (327)
                      +..+..+++|+|++++++++..++   .|++||+++++.+..+.....  ...++++++.++++ ..++. |.+||+...
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            566655599999999999555553   999999999988877765443  45667777766555 55577 999998754


Q ss_pred             ccceeeecc--cceeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        169 GYIMQRRES--SLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       169 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      +.+......  .....+..+.++|+++.++++. .++.+.++....+.... ....+..+          ..+..++|+|
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~~----------~~~~~~~~sp  230 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-LLNAVGTN----------NLPGTIVVSR  230 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-EEEEEECS----------SCCCCEEECT
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-eeeeccCC----------CCCceEEECC
Confidence            432111000  1112346778888887555444 45566665444332200 01111110          1356899999


Q ss_pred             CCCeEEEec-CCCeEEEEeCCCcee--eeecCc----CCcc---eEEEEECCCCCEEEEEEccc
Q psy11885        246 EYNTFATGG-SDGYVNIWDGFNKKR--LCQFHR----YDTG---ITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       246 d~~~lasgs-~dg~i~iWd~~~~~~--~~~~~~----~~~~---v~~l~fspdg~~la~~~~~~  299 (327)
                      ||++|++++ .++.|.+||..+++.  +..+..    +..+   ...++|||||++|++++...
T Consensus       231 dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  294 (331)
T 3u4y_A          231 DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS  294 (331)
T ss_dssp             TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred             CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC
Confidence            999776554 578899999988876  322211    1222   35689999999998887654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=1.2e-20  Score=164.52  Aligned_cols=251  Identities=10%  Similarity=0.045  Sum_probs=168.6

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCC---ceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceee-ee-cC----C
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSD---PVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETV-IG-TH----D   97 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~---~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~-~~-~h----~   97 (327)
                      .+|++++.++.|++||..+++.........   .+..++|+ ++..++ +++.++.|.+||+.+++... +. .+    .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            478999999999999999998765555444   57888996 565654 56668899999998876532 22 11    2


Q ss_pred             ccEEEEEEeCCCCEEEEEE------------CCCeEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEEEEeCCCeEEEE
Q psy11885         98 QPIRAVEYSDEVNCILTGS------------WDTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        98 ~~V~~l~~~~~~~~l~sgs------------~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~iw  163 (327)
                      ..+..++|+|+++.++++.            .++.|.+||+.+++.+..+....  ..+.++++++.++++  ++.|.+|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence            2567899999999998886            67999999999988777665432  345677888888877  6889999


Q ss_pred             ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeE----------------------EEEEccCCcccccceee
Q psy11885        164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRA----------------------AVEYLDTGPEMQKMKYA  221 (327)
Q Consensus       164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~i~~~~~~~~~~~~~~~  221 (327)
                      |+++++...........   ....+.|++..+++....+..                      .+..++....... ...
T Consensus       160 d~~~~~~~~~~~~~~~~---~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~  235 (337)
T 1pby_B          160 DPEAGTLVEDKPIQSWE---AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE  235 (337)
T ss_dssp             ETTTTEEEEEECSTTTT---TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE
T ss_pred             ECCCCcEeeeeeccccC---CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee
Confidence            99877543221111100   112345555433333222211                      2333443321111 111


Q ss_pred             eeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       222 ~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      +..+.         ..+.+++|+||+++|+++  ++.|++||+.+++.+..+... ..+.+++|+|||++|++++.
T Consensus       236 ~~~~~---------~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~  299 (337)
T 1pby_B          236 VRIMD---------VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGA  299 (337)
T ss_dssp             EEECS---------SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESB
T ss_pred             cCCCC---------CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcC
Confidence            11110         135679999999999988  799999999998877766533 45689999999999988754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=1.1e-20  Score=181.82  Aligned_cols=265  Identities=12%  Similarity=0.032  Sum_probs=178.8

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCC-----Cc
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT-----QT   89 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~-----~~   89 (327)
                      ..|++++|+|+ +.++++  .|+.|++||+.+++......+...+.+++|+ ++..++++ .|+.|++||+.+     +.
T Consensus        82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEE--ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            47999999996 544444  3699999999999877777777788899996 77778774 689999999987     65


Q ss_pred             eeee-ecCCcc--------------EEEEEEeCCCCEEEEEE---------------------------------CCCeE
Q psy11885         90 ETVI-GTHDQP--------------IRAVEYSDEVNCILTGS---------------------------------WDTSV  121 (327)
Q Consensus        90 ~~~~-~~h~~~--------------V~~l~~~~~~~~l~sgs---------------------------------~d~~i  121 (327)
                      ...+ ..+...              +.++.|+|||+.|++++                                 .+..|
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            4432 222222              47899999999999987                                 45789


Q ss_pred             EEEeCCCCceeeeeeC--C-Cc--EEEEecCCCeEEEEeCCC-----eEEEEECCCCccceeeecc-c--ceeeeEEeEE
Q psy11885        122 KMWDPRSSRCVGNYTQ--P-DK--VFTMSLCGEKFVVGTAGR-----KVCIWDLRNMGYIMQRRES-S--LKFQTRCIKC  188 (327)
Q Consensus       122 ~lwdl~~~~~~~~~~~--~-~~--~~~~~~~~~~~~~~~~d~-----~v~iwD~~~~~~~~~~~~~-~--~~~~~~~~~~  188 (327)
                      ++||+.+++.......  + ..  ...++++|+.+++++.++     .|.+||+.+++........ .  .......+.+
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF  317 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence            9999998876544321  1 22  356677888898887765     8999999876322111110 0  0001134577


Q ss_pred             ee--CCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE-EEEecCCCeEEEe-cCCC----eEE
Q psy11885        189 FP--NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA-ISFHQEYNTFATG-GSDG----YVN  260 (327)
Q Consensus       189 ~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~-v~~spd~~~lasg-s~dg----~i~  260 (327)
                      +|  +++.++++..++...++.++.....   ...+..+.         +.+.. ++|+|+++.|+.+ +.++    .|+
T Consensus       318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~~---~~~l~~~~---------~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~  385 (706)
T 2z3z_A          318 LPGSNNQFIWQSRRDGWNHLYLYDTTGRL---IRQVTKGE---------WEVTNFAGFDPKGTRLYFESTEASPLERHFY  385 (706)
T ss_dssp             CTTCSSEEEEEECTTSSCEEEEEETTSCE---EEECCCSS---------SCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred             ecCCCCEEEEEEccCCccEEEEEECCCCE---EEecCCCC---------eEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence            88  7765556666677777776632111   11111111         13444 7999999987654 4444    677


Q ss_pred             EEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        261 IWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       261 iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      .||..+++ +..+. +...+.+++|||||++|+.+++.
T Consensus       386 ~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~  421 (706)
T 2z3z_A          386 CIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQS  421 (706)
T ss_dssp             EEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEEC
T ss_pred             EEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecC
Confidence            77877655 33443 45678999999999999988653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=1.3e-20  Score=181.32  Aligned_cols=270  Identities=11%  Similarity=0.073  Sum_probs=180.7

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE--EEEecCC-----------------CceeeEEEeCCceEEEEecC
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--RLKYAHS-----------------DPVLDCCFQDAVHSFSGGLD   77 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~h~-----------------~~v~~~~~~~~~~~~sgs~D   77 (327)
                      .+..+.|.  ++ .+++++.|+ | +||+.+++.  .....|.                 ..+.+++|++...++.+ .|
T Consensus        27 ~~~~~~w~--g~-~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~  100 (706)
T 2z3z_A           27 YVVGLQWM--GD-NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQ  100 (706)
T ss_dssp             -CTTCEEE--TT-EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ET
T ss_pred             cCCCCcCc--CC-eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-EC
Confidence            35567888  33 455666677 8 999999886  5555543                 46889999754655555 47


Q ss_pred             CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC-----CceeeeeeCC--------------
Q psy11885         78 CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS-----SRCVGNYTQP--------------  138 (327)
Q Consensus        78 g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-----~~~~~~~~~~--------------  138 (327)
                      ++|++||+.++....+..+...+..++|+|||+.|+++ .|+.|++||+.+     ++........              
T Consensus       101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee  179 (706)
T 2z3z_A          101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE  179 (706)
T ss_dssp             TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred             CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence            99999999888766666677778899999999999985 689999999988     7665433221              


Q ss_pred             ---CcEEEEecCCCeEEEEe---------------------------------CCCeEEEEECCCCccceeeecccceee
Q psy11885        139 ---DKVFTMSLCGEKFVVGT---------------------------------AGRKVCIWDLRNMGYIMQRRESSLKFQ  182 (327)
Q Consensus       139 ---~~~~~~~~~~~~~~~~~---------------------------------~d~~v~iwD~~~~~~~~~~~~~~~~~~  182 (327)
                         .....++++|+.|++++                                 .+..|.+||+++.+.............
T Consensus       180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  259 (706)
T 2z3z_A          180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF  259 (706)
T ss_dssp             TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred             cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence               13567888999999887                                 346799999987653211111112223


Q ss_pred             eEEeEEeeCCCceEEEeecC---eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec--CCCeEEEecCCC
Q psy11885        183 TRCIKCFPNKQGYVLSSIEG---RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ--EYNTFATGGSDG  257 (327)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp--d~~~lasgs~dg  257 (327)
                      ...+.++|+++.+++++.+.   ...++.|+..... ........+..   .  ....+.+++|+|  ||++|++++.|+
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-~~~~~~~~~~~---~--~~~~~~~~~~sp~~dg~~l~~~~~~g  333 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-FVRTLFVETDK---H--YVEPLHPLTFLPGSNNQFIWQSRRDG  333 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-EEEEEEEEECS---S--CCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-eeeEEEEccCC---C--eECccCCceeecCCCCEEEEEEccCC
Confidence            56788899988777766543   2355556543320 11111110000   0  001246789999  999999999999


Q ss_pred             eEEEEeCC-CceeeeecCcCCcceEE-EEECCCCCEEEEEEccc
Q psy11885        258 YVNIWDGF-NKKRLCQFHRYDTGITS-LCFSYDGNVLAIACSYN  299 (327)
Q Consensus       258 ~i~iWd~~-~~~~~~~~~~~~~~v~~-l~fspdg~~la~~~~~~  299 (327)
                      .++||++. +++.+..+..+...+.+ ++|||||+.|++++..+
T Consensus       334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~  377 (706)
T 2z3z_A          334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA  377 (706)
T ss_dssp             SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred             ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence            99999876 56667777777777776 79999999998887653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=1.4e-20  Score=181.34  Aligned_cols=270  Identities=8%  Similarity=0.031  Sum_probs=178.6

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-CCC---ceeeEEEe-CCceEEEEecC---------CcEE
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HSD---PVLDCCFQ-DAVHSFSGGLD---------CTLK   81 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~~---~v~~~~~~-~~~~~~sgs~D---------g~i~   81 (327)
                      ..+.+++|+|++ +++++ +.|++|++||+.+++...... |..   .|.+++|+ ++.++++++.+         +.+.
T Consensus        17 ~~~~~~~~spdg-~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           17 IHDPEAKWISDT-EFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCCCBSSSS-CBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             ccccccEEcCCC-cEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            457889999965 56665 789999999999988554444 443   48899995 78889888764         7788


Q ss_pred             EEEcCCCceeeee---cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-------------------
Q psy11885         82 MFDFNTQTETVIG---THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-------------------  139 (327)
Q Consensus        82 vwd~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-------------------  139 (327)
                      +||++++....+.   .|...+..++|+|||+.|+.++. +.|++||+.+++.......+.                   
T Consensus        95 ~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             EEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            9999987654443   34455889999999999999886 799999999887655433211                   


Q ss_pred             --cEEEEecCCCeEEEEeCCC----------------------------------eEEEEECCCCccceeeeccc----c
Q psy11885        140 --KVFTMSLCGEKFVVGTAGR----------------------------------KVCIWDLRNMGYIMQRRESS----L  179 (327)
Q Consensus       140 --~~~~~~~~~~~~~~~~~d~----------------------------------~v~iwD~~~~~~~~~~~~~~----~  179 (327)
                        ....++++|+.|++++.++                                  .|++||+.+.+.........    .
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~  253 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence              2467888899998887543                                  79999998765322111110    1


Q ss_pred             eeeeEEeEEeeCCCceEEEeec--CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe----eEEEEecCCCeEEE-
Q psy11885        180 KFQTRCIKCFPNKQGYVLSSIE--GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV----NAISFHQEYNTFAT-  252 (327)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v----~~v~~spd~~~las-  252 (327)
                      ......+.++|+++.++.....  ....++.|+.....  ....+..+..   +     .+    ..++|+|||+.|+. 
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~---~-----~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV--CTKKHEDESE---A-----WLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC--EEEEEEEECS---S-----CCCCCCCCCEECTTSCSEEEE
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc--ceEEEEeccC---C-----EEeccCCCceEcCCCCeEEEE
Confidence            2234567888888755554433  34556666643321  1111111100   0     12    26899999998875 


Q ss_pred             -ecCCC------eEEEEe-CCCcee--eeecCcCCcceEE-EEECCCCCEEEEEEcc
Q psy11885        253 -GGSDG------YVNIWD-GFNKKR--LCQFHRYDTGITS-LCFSYDGNVLAIACSY  298 (327)
Q Consensus       253 -gs~dg------~i~iWd-~~~~~~--~~~~~~~~~~v~~-l~fspdg~~la~~~~~  298 (327)
                       +..++      .|++|| ..+++.  ...+......+.. ++|||||+.|+..+..
T Consensus       324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~  380 (723)
T 1xfd_A          324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE  380 (723)
T ss_dssp             EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred             EecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcC
Confidence             45667      567777 333331  4455443444554 6999999999877654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=5.3e-20  Score=173.31  Aligned_cols=269  Identities=11%  Similarity=0.052  Sum_probs=177.2

Q ss_pred             CCCeeEEEEecCCCcEEEEEEC-CCcEEEEECCCCeEEEEecCC-CceeeEEEeCCceEEEEec---CCcEEEEEcCC--
Q psy11885         15 EDGITAVKFAPNSNQFLLASSW-DCNVSLYDITNNNLRLKYAHS-DPVLDCCFQDAVHSFSGGL---DCTLKMFDFNT--   87 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~h~-~~v~~~~~~~~~~~~sgs~---Dg~i~vwd~~~--   87 (327)
                      ...|.+++|+|| ++.||.++. |++++||++.+++......|. ..+..++|+++..+++++.   +...++|.++.  
T Consensus        21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCC-CCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence            347999999996 467787776 999999999888876666665 5788888975566666665   55667766543  


Q ss_pred             C-ceeeeecCCccEEEEEEeCCCCE-EEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCC----CeEE
Q psy11885         88 Q-TETVIGTHDQPIRAVEYSDEVNC-ILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAG----RKVC  161 (327)
Q Consensus        88 ~-~~~~~~~h~~~V~~l~~~~~~~~-l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~v~  161 (327)
                      . ....+... ..+...+|+|+++. +++.+.++.+.+||+.+++.......+.....++++|+.+++++.+    +.|+
T Consensus       100 ~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~  178 (582)
T 3o4h_A          100 PGEEQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLF  178 (582)
T ss_dssp             TTCCEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred             CCccccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEE
Confidence            2 22222222 23446678888753 3444444555699999887665555455567788999999987776    7899


Q ss_pred             EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885        162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI  241 (327)
Q Consensus       162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  241 (327)
                      +||+.+++.. ..  ..........+++|+++.++.+..++...++.|+.......   .+..|........ .......
T Consensus       179 ~~d~~~g~~~-~l--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~-~~~~~~~  251 (582)
T 3o4h_A          179 TSNLSSGGLR-VF--DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE---DLELPSKDFSSYR-PTAITWL  251 (582)
T ss_dssp             EEETTTCCCE-EE--CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE---ECCCSCSHHHHHC-CSEEEEE
T ss_pred             EEcCCCCCce-Ee--ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE---EccCCCcChhhhh-hccccce
Confidence            9999876532 11  11222346778999998888666666556667775432211   1122211000000 0011233


Q ss_pred             EEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       242 ~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      +|+|||.++++++.|+++++|++  ++.+..   ....+.+++|| ||+++++++++
T Consensus       252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s~~  302 (582)
T 3o4h_A          252 GYLPDGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHTSL  302 (582)
T ss_dssp             EECTTSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEEET
T ss_pred             eEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEcCC
Confidence            49999988899999999999998  665542   33568899999 99999888764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=2.4e-20  Score=180.41  Aligned_cols=263  Identities=12%  Similarity=0.081  Sum_probs=181.1

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCC---eEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceee
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNN---NLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETV   92 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~   92 (327)
                      .|.+++|||+ +++|++++. +.|++||+.++   +......|...+..++|+ ++.++++++ ++.|++||+.++....
T Consensus       110 ~v~~~~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          110 GIVDYQWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             ESCCCEECTT-SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             CcceeEECCC-CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence            4889999996 577887775 99999999988   666666777889999995 777788777 6799999998876543


Q ss_pred             ee-cCCcc----------------EEEEEEeCCCCEEEEEECCC---------------------------------eEE
Q psy11885         93 IG-THDQP----------------IRAVEYSDEVNCILTGSWDT---------------------------------SVK  122 (327)
Q Consensus        93 ~~-~h~~~----------------V~~l~~~~~~~~l~sgs~d~---------------------------------~i~  122 (327)
                      +. .+...                +..+.|+|||+.|++++.|+                                 .|+
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            32 23222                47799999999999988776                                 889


Q ss_pred             EEeCCC-CceeeeeeC--C-C--cEEEEecCCCeEEEEeC-----CCeEEEEECCCCccceeeeccccee--eeEEeEEe
Q psy11885        123 MWDPRS-SRCVGNYTQ--P-D--KVFTMSLCGEKFVVGTA-----GRKVCIWDLRNMGYIMQRRESSLKF--QTRCIKCF  189 (327)
Q Consensus       123 lwdl~~-~~~~~~~~~--~-~--~~~~~~~~~~~~~~~~~-----d~~v~iwD~~~~~~~~~~~~~~~~~--~~~~~~~~  189 (327)
                      +||+.+ ++.......  . .  ....+ ++|+.+++++.     +..|.+||+.+++............  ....+.++
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            999988 775443221  1 1  23567 88888887653     4679999998765322111111000  12356788


Q ss_pred             eCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE-EEecCCCeEE-EecCCC--eEEEEeCC
Q psy11885        190 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI-SFHQEYNTFA-TGGSDG--YVNIWDGF  265 (327)
Q Consensus       190 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v-~~spd~~~la-sgs~dg--~i~iWd~~  265 (327)
                      |+++.++++..++...++.++....    ...+..|.         ..+..+ +|+|+++.|+ +++.++  +++||++.
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~~~~~----~~~l~~~~---------~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRIDSKGK----AAALTHGN---------WSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEECSSSC----EEESCCSS---------SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             CCCeEEEEecCCCccEEEEEcCCCC----eeeeeecc---------eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            8887556666667777877764321    11111111         135555 6999998775 555565  89999875


Q ss_pred             C-ceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        266 N-KKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       266 ~-~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      . ++.+..+.. ...+.+++|||||++||..++
T Consensus       413 ~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~  444 (741)
T 2ecf_A          413 LQGGQPQRLSK-APGMHSASFARNASVYVDSWS  444 (741)
T ss_dssp             TTCCCCEECCC-SCSEEEEEECTTSSEEEEEEE
T ss_pred             cCCCCeeeccc-CCCceEEEECCCCCEEEEEec
Confidence            3 444555554 556889999999999998864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=5.6e-19  Score=155.29  Aligned_cols=266  Identities=9%  Similarity=0.057  Sum_probs=164.6

Q ss_pred             EEEEEE----CCCcEEEEECC--CCeEEE--EecCCCceeeEEEe-CCceEEEEec---CCcEEEEEcCCCceeee---e
Q psy11885         30 FLLASS----WDCNVSLYDIT--NNNLRL--KYAHSDPVLDCCFQ-DAVHSFSGGL---DCTLKMFDFNTQTETVI---G   94 (327)
Q Consensus        30 ~l~s~~----~d~~i~iwd~~--~~~~~~--~~~h~~~v~~~~~~-~~~~~~sgs~---Dg~i~vwd~~~~~~~~~---~   94 (327)
                      .+++|+    .++.|.+|++.  ++++..  ...+...+..++|+ ++. +++++.   ++.|.+|++.++....+   .
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~   82 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV   82 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence            455553    34567777664  566432  33455667788996 555 776655   68999999977654332   3


Q ss_pred             cCCccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCC-Cc--eeeeeeCC------------CcEEEEecCCCeEEEEeCCC
Q psy11885         95 THDQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRS-SR--CVGNYTQP------------DKVFTMSLCGEKFVVGTAGR  158 (327)
Q Consensus        95 ~h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~-~~--~~~~~~~~------------~~~~~~~~~~~~~~~~~~d~  158 (327)
                      .+...+..++|+|+|++|++++ .+++|++||+.. ++  .+..+...            ...+.++++++.+++...++
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~  162 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD  162 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred             cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence            4667788999999999999888 679999999963 32  22333221            12366778888555556788


Q ss_pred             eEEEEECCCCccceeee--cccceeeeEEeEEeeCCCceEEE-eecCeEEEEEccCCcccccceeeeeeeeeccCCeeeE
Q psy11885        159 KVCIWDLRNMGYIMQRR--ESSLKFQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI  235 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  235 (327)
                      .|++||+..........  .......+..+++.|+++.++++ ..++.+.++.++...........+..  .. .+....
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~--~~-~~~~~~  239 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT--IP-ADYTAH  239 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES--SC-TTCCSC
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee--cC-CCCCCC
Confidence            99999998322211111  11111134567888888755543 44566666555532111111111110  00 000001


Q ss_pred             EEeeEEEEecCCCeE-EEecCCCeEEEEeCCC---ceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        236 YPVNAISFHQEYNTF-ATGGSDGYVNIWDGFN---KKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       236 ~~v~~v~~spd~~~l-asgs~dg~i~iWd~~~---~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      ..+..++|+|||++| ++...++.|.+|++..   .+.+..+..+...+..++|||||++|++++...
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  307 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT  307 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC
Confidence            246789999999987 5566689999999862   244455554445678999999999999987653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=9.3e-21  Score=172.08  Aligned_cols=191  Identities=12%  Similarity=0.120  Sum_probs=138.0

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC-----------CeEE-----EEecCCCceeeEEEe-CCceEE----
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN-----------NNLR-----LKYAHSDPVLDCCFQ-DAVHSF----   72 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~-----------~~~~-----~~~~h~~~v~~~~~~-~~~~~~----   72 (327)
                      +...++.++++++ +.++++++.|+ +++|+...           ....     ....+...|.+++|+ ++.+++    
T Consensus        35 ~~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~  112 (434)
T 2oit_A           35 PKERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM  112 (434)
T ss_dssp             CCSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred             CCCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence            3456899999995 56888888887 89987531           1111     123466789999995 778888    


Q ss_pred             EEecCCcEEEEEcCCC--------c----eeeeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeeeCCC
Q psy11885         73 SGGLDCTLKMFDFNTQ--------T----ETVIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYTQPD  139 (327)
Q Consensus        73 sgs~Dg~i~vwd~~~~--------~----~~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~  139 (327)
                      +|+.|++|++||+++.        +    ...+.+|...|.+++|+|+ ++.|++++.|++|++||++++..+..     
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~-----  187 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA-----  187 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE-----
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee-----
Confidence            8899999999998653        1    1234568999999999997 78899999999999999865321000     


Q ss_pred             cEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccce
Q psy11885        140 KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK  219 (327)
Q Consensus       140 ~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  219 (327)
                                                                      .                    .          
T Consensus       188 ------------------------------------------------~--------------------~----------  189 (434)
T 2oit_A          188 ------------------------------------------------T--------------------L----------  189 (434)
T ss_dssp             ------------------------------------------------E--------------------E----------
T ss_pred             ------------------------------------------------c--------------------c----------
Confidence                                                            0                    0          


Q ss_pred             eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc-------CCcceEEEEECCCCCEE
Q psy11885        220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-------YDTGITSLCFSYDGNVL  292 (327)
Q Consensus       220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~-------~~~~v~~l~fspdg~~l  292 (327)
                          .|.         ..|.+++|+|+|++||+|+.||+|++||.+ ++....+..       |...|.+++|++++.++
T Consensus       190 ----~~~---------~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          190 ----PST---------VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA  255 (434)
T ss_dssp             ----CGG---------GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred             ----CCC---------CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEE
Confidence                000         036789999999999999999999999987 444433322       22379999999999988


Q ss_pred             EEEEccccccC
Q psy11885        293 AIACSYNYELE  303 (327)
Q Consensus       293 a~~~~~~~~~~  303 (327)
                      ++.+..+..++
T Consensus       256 ~~~~~~dg~~~  266 (434)
T 2oit_A          256 IVYAAADGTLE  266 (434)
T ss_dssp             EEEEETTCCSS
T ss_pred             EEEccCCCccC
Confidence            77665543333

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=7.1e-19  Score=153.62  Aligned_cols=266  Identities=8%  Similarity=0.055  Sum_probs=164.3

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECC-CcEEEEECC--CCeEE--EEecCCCceeeEEEe-CCceEEEEec-CCcEEEEEcC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWD-CNVSLYDIT--NNNLR--LKYAHSDPVLDCCFQ-DAVHSFSGGL-DCTLKMFDFN   86 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d-~~i~iwd~~--~~~~~--~~~~h~~~v~~~~~~-~~~~~~sgs~-Dg~i~vwd~~   86 (327)
                      +...+.+++|+|+ +++|++++.+ +.|++|++.  +++..  ........+..++|+ ++..+++++. ++.|++||++
T Consensus        36 ~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           36 VPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             CSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            4567899999996 5677777776 999999997  55533  223333477888995 6776766654 8899999995


Q ss_pred             CCc---eeeeecCCccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCC-Cceee----eeeC--CC--cEEEEecCCCeEEE
Q psy11885         87 TQT---ETVIGTHDQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRS-SRCVG----NYTQ--PD--KVFTMSLCGEKFVV  153 (327)
Q Consensus        87 ~~~---~~~~~~h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~-~~~~~----~~~~--~~--~~~~~~~~~~~~~~  153 (327)
                      .+.   ..........+.+++|+|+++.+++++ .++.|++||+.+ ++...    .+..  ..  ..+.++++++.+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~  194 (343)
T 1ri6_A          115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC  194 (343)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEE
Confidence            222   222222334588899999999888887 899999999987 54422    2221  11  23557777887665


Q ss_pred             Ee-CCCeEEEEECCC--Cccceeeecccc------eeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccceeeee
Q psy11885        154 GT-AGRKVCIWDLRN--MGYIMQRRESSL------KFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFK  223 (327)
Q Consensus       154 ~~-~d~~v~iwD~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~  223 (327)
                      ++ .++.|++||++.  ............      ......+++.|+++.++++. .++.+.++..+...........+.
T Consensus       195 ~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~  274 (343)
T 1ri6_A          195 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP  274 (343)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec
Confidence            54 789999999953  221101111100      11234577888876665444 456666655442111111111111


Q ss_pred             eeeeccCCeeeEEEeeEEEEecCCCeEEEec-CCCeEEEEeC--CCce--eeeecCcCCcceEEEEECCCCCE
Q psy11885        224 CHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIWDG--FNKK--RLCQFHRYDTGITSLCFSYDGNV  291 (327)
Q Consensus       224 ~h~~~~~~~~~~~~v~~v~~spd~~~lasgs-~dg~i~iWd~--~~~~--~~~~~~~~~~~v~~l~fspdg~~  291 (327)
                      .+          ..+.+++|+|++++|++++ .++.|.+|++  .+++  .+..+... ....+++|.|+.+.
T Consensus       275 ~~----------~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          275 TE----------TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEGG  336 (343)
T ss_dssp             CS----------SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC--
T ss_pred             CC----------CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccCC
Confidence            10          0256899999999888777 5799999954  4553  33344332 23468888886543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.85  E-value=1.3e-19  Score=158.04  Aligned_cols=241  Identities=10%  Similarity=-0.005  Sum_probs=160.8

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC------CceeeEEEe-CCceEEEEe------------cC
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS------DPVLDCCFQ-DAVHSFSGG------------LD   77 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~------~~v~~~~~~-~~~~~~sgs------------~D   77 (327)
                      .+..++|+|++..++++++.++.|.+||+.+++........      ..+..++|+ ++..+++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            47899999975445566667889999999988865443322      256778885 677888775            57


Q ss_pred             CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEEEEe
Q psy11885         78 CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVGT  155 (327)
Q Consensus        78 g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  155 (327)
                      +.|.+||+.+++..........+..++|+|++++++++  ++.|.+||+++++....+....  ....+++++..+++..
T Consensus       115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  192 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeec
Confidence            99999999877654322234457889999999988887  6899999999988776655332  2234555555444332


Q ss_pred             C-CC-----------------------eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccC
Q psy11885        156 A-GR-----------------------KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT  211 (327)
Q Consensus       156 ~-d~-----------------------~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  211 (327)
                      . ++                       .|.+||+++.+.. .............+++.|+++.++++  ++.+.++....
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~  269 (337)
T 1pby_B          193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred             cCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence            2 22                       5789999876543 11111111223567788887766665  45555544332


Q ss_pred             CcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcC
Q psy11885        212 GPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY  276 (327)
Q Consensus       212 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~  276 (327)
                      ...    ...+...          ..+.+++|+|++++|++++.++.|++||+.+++.+..+..+
T Consensus       270 ~~~----~~~~~~~----------~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          270 NAS----IKRVPLP----------HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TEE----EEEEECS----------SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CcC----cceecCC----------CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            221    1111110          13578999999999999999999999999998887776543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=5.5e-19  Score=177.15  Aligned_cols=274  Identities=9%  Similarity=0.002  Sum_probs=186.1

Q ss_pred             CCeeEEEEe-cCCCcEEEEEECCCcEEEEECCCCeEEEEecCCC-ceeeEEEeCCceEEEEecCCcEE-EEEcCCCceee
Q psy11885         16 DGITAVKFA-PNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSD-PVLDCCFQDAVHSFSGGLDCTLK-MFDFNTQTETV   92 (327)
Q Consensus        16 ~~I~~i~fs-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-~v~~~~~~~~~~~~sgs~Dg~i~-vwd~~~~~~~~   92 (327)
                      +.|.+++|+ |+ +++|++++ ++.|.+|++.+++......|.. .+..++|+++..+++++.+..+. +||+.++....
T Consensus       296 ~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~  373 (1045)
T 1k32_A          296 PSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK  373 (1045)
T ss_dssp             GGGGEEEEEECG-GGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             cccceeeecCCC-CCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceE
Confidence            468999999 96 46777776 8899999999888666666766 78888888667888888888888 88998776655


Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecCCCeEEEEeCCC----------e
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLCGEKFVVGTAGR----------K  159 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~----------~  159 (327)
                      +..|...+..++|+|||+.|++++.++.|++||+++++.......+   .....++++|+.+++++.++          .
T Consensus       374 l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~  453 (1045)
T 1k32_A          374 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  453 (1045)
T ss_dssp             CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCe
Confidence            5577788999999999999999999999999999998876655332   23467888899888876644          8


Q ss_pred             EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcc----------------c-cc--ce-
Q psy11885        160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE----------------M-QK--MK-  219 (327)
Q Consensus       160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------~-~~--~~-  219 (327)
                      |++||+.+.+. ....  ........+.++|+++.++..+..+...++.......                . ..  +. 
T Consensus       454 i~l~d~~~g~~-~~l~--~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (1045)
T 1k32_A          454 IHVYDMEGRKI-FAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP  530 (1045)
T ss_dssp             EEEEETTTTEE-EECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCC
T ss_pred             EEEEECCCCcE-EEee--CCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCc
Confidence            99999987652 1111  1112234567888888777666543322211000000                0 00  00 


Q ss_pred             ---------eeeeeeeeccCCe-eeEEEeeEEEEecCCCeEEE-------------ecCCCeEEEEeCCCceeeeecCcC
Q psy11885        220 ---------YAFKCHRIKEDGI-EKIYPVNAISFHQEYNTFAT-------------GGSDGYVNIWDGFNKKRLCQFHRY  276 (327)
Q Consensus       220 ---------~~~~~h~~~~~~~-~~~~~v~~v~~spd~~~las-------------gs~dg~i~iWd~~~~~~~~~~~~~  276 (327)
                               ..+.........+ .+...+..++++||+.++++             .+.+..|++||+.+++.. .+.  
T Consensus       531 ~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~--  607 (1045)
T 1k32_A          531 RSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK--  607 (1045)
T ss_dssp             GGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE--
T ss_pred             CccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE-Eee--
Confidence                     0000000000000 01124678999999988885             123457888998887643 232  


Q ss_pred             CcceEEEEECCCCCEEEEEEcc
Q psy11885        277 DTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       277 ~~~v~~l~fspdg~~la~~~~~  298 (327)
                       ..+.+++|||||++|++++.+
T Consensus       608 -~~v~~~~~S~DG~~l~~~~~~  628 (1045)
T 1k32_A          608 -NNLTDLRLSADRKTVMVRKDD  628 (1045)
T ss_dssp             -EEEEEEEECTTSCEEEEEETT
T ss_pred             -cCcceEEECCCCCEEEEEcCC
Confidence             568899999999999998755

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.84  E-value=3.6e-19  Score=171.57  Aligned_cols=270  Identities=7%  Similarity=-0.009  Sum_probs=173.9

Q ss_pred             CeeEEEEecCCCcEEEEEECC---------CcEEEEECCCCeEEEEec---CCCceeeEEEe-CCceEEEEecCCcEEEE
Q psy11885         17 GITAVKFAPNSNQFLLASSWD---------CNVSLYDITNNNLRLKYA---HSDPVLDCCFQ-DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~---h~~~v~~~~~~-~~~~~~sgs~Dg~i~vw   83 (327)
                      .|.+++|||+ +++|++++.+         +.+.+||+.+++......   |...+..++|+ ++..+++++. +.|++|
T Consensus        62 ~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~  139 (723)
T 1xfd_A           62 RAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC  139 (723)
T ss_dssp             TCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred             ccceEEECCC-CCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence            5999999996 5788888764         788899999887533332   33447888995 7888888874 899999


Q ss_pred             EcCCCceeee-ecCCcc------------------EEEEEEeCCCCEEEEEECCC-------------------------
Q psy11885         84 DFNTQTETVI-GTHDQP------------------IRAVEYSDEVNCILTGSWDT-------------------------  119 (327)
Q Consensus        84 d~~~~~~~~~-~~h~~~------------------V~~l~~~~~~~~l~sgs~d~-------------------------  119 (327)
                      |+.++....+ ..+...                  +.+++|+|||+.|++++.|+                         
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (723)
T 1xfd_A          140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (723)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence            9988765433 333322                  27899999999999987653                         


Q ss_pred             ---------eEEEEeCCCCceeeeeeCC-------Cc--EEEEecCCCeEEEEeC----CCeEEEEECCCCccceeeecc
Q psy11885        120 ---------SVKMWDPRSSRCVGNYTQP-------DK--VFTMSLCGEKFVVGTA----GRKVCIWDLRNMGYIMQRRES  177 (327)
Q Consensus       120 ---------~i~lwdl~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~----d~~v~iwD~~~~~~~~~~~~~  177 (327)
                               +|++||+.++++...+..+       ..  ...++++|+.+++...    +..|++||+.+++........
T Consensus       220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~  299 (723)
T 1xfd_A          220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE  299 (723)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence                     8999999988764544432       12  2456777877766543    257999999876532211111


Q ss_pred             ccee-e--eEEeEEeeCCCceEEE-e-ecC----eEEEEEcc-CCcccccceeeeeeeeeccCCeeeEEEe-eEEEEecC
Q psy11885        178 SLKF-Q--TRCIKCFPNKQGYVLS-S-IEG----RAAVEYLD-TGPEMQKMKYAFKCHRIKEDGIEKIYPV-NAISFHQE  246 (327)
Q Consensus       178 ~~~~-~--~~~~~~~~~~~~~~~~-~-~~~----~~~i~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~v-~~v~~spd  246 (327)
                      .... .  ...+.++|+++.++.. + .++    ...++.++ ...........+..+     .    ..+ ..++|+||
T Consensus       300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-----~----~~~~~~~~~spd  370 (723)
T 1xfd_A          300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-----D----WDVTKILAYDEK  370 (723)
T ss_dssp             CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-----S----SCEEEEEEEETT
T ss_pred             cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-----C----eEEEeeeEEcCC
Confidence            0000 0  1256788888877654 3 344    45677776 222110000011100     0    012 33699999


Q ss_pred             CCeEEEecCC---CeEEEEeCCCc--eeeeecCc---CCcceEEEEECCCCCEEEEEEc
Q psy11885        247 YNTFATGGSD---GYVNIWDGFNK--KRLCQFHR---YDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       247 ~~~lasgs~d---g~i~iWd~~~~--~~~~~~~~---~~~~v~~l~fspdg~~la~~~~  297 (327)
                      ++.|+..+.+   +.++||++...  .....+..   +...+..++|||||++||..++
T Consensus       371 g~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          371 GNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             TTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             CCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            9999755544   78999987532  12333432   4556889999999999998754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.84  E-value=1.4e-18  Score=174.27  Aligned_cols=266  Identities=12%  Similarity=0.035  Sum_probs=185.4

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECC--CCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDIT--NNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      ..|.+.+.+++|+++  .++++++.|++++||.+.  ++.......|. .+...+|+ ++..+++++ ++.|.+||++..
T Consensus       200 ~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~  275 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE  275 (1045)
T ss_dssp             ECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC
T ss_pred             cCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce
Confidence            456788999999984  677788888999999865  33344333444 35566774 777788774 999999998544


Q ss_pred             ceeeeec-----------CCccEEEEEEe-CCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEEEEec-CCCeEEEE
Q psy11885         89 TETVIGT-----------HDQPIRAVEYS-DEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVFTMSL-CGEKFVVG  154 (327)
Q Consensus        89 ~~~~~~~-----------h~~~V~~l~~~-~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~  154 (327)
                      ....+..           |...+..++|+ |+|+.|++++ ++.|.+|++.+++......... .+..+.+ +++.++++
T Consensus       276 ~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~  354 (1045)
T 1k32_A          276 KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHG  354 (1045)
T ss_dssp             CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEE
T ss_pred             EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEE
Confidence            3332322           34468999999 9999999888 7899999998876544322233 3333333 56678888


Q ss_pred             eCCCeEE-EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCee
Q psy11885        155 TAGRKVC-IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE  233 (327)
Q Consensus       155 ~~d~~v~-iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~  233 (327)
                      +.++.+. +||+.+.+.. ...  ........++++|+++.++.++.++.+.++....+..    ......|.       
T Consensus       355 s~~~~l~~~~d~~~~~~~-~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~----~~~~~~~~-------  420 (1045)
T 1k32_A          355 TREGDFLGIYDYRTGKAE-KFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP----TVIERSRE-------  420 (1045)
T ss_dssp             ETTEEEEEEEETTTCCEE-ECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEECSS-------
T ss_pred             ECCCceEEEEECCCCCce-Eec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce----EEeccCCC-------
Confidence            8888888 9998765421 111  1222346778899988888887777666654443321    11111121       


Q ss_pred             eEEEeeEEEEecCCCeEEEecCCC----------eEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        234 KIYPVNAISFHQEYNTFATGGSDG----------YVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       234 ~~~~v~~v~~spd~~~lasgs~dg----------~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                        ..+.+++|||||++||+++.++          .|++||+.+++ +..+..+...+.+++|||||++|++++...
T Consensus       421 --~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~  493 (1045)
T 1k32_A          421 --AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRS  493 (1045)
T ss_dssp             --SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred             --CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence              1467899999999999887644          89999998877 666777777789999999999999987643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=5.8e-18  Score=148.30  Aligned_cols=260  Identities=10%  Similarity=0.069  Sum_probs=159.0

Q ss_pred             EEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCC--ceeeEEEe-CCceEE-EEecCCcEEEEEcCCCcee-eee
Q psy11885         20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSD--PVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTET-VIG   94 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~--~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~-~~~   94 (327)
                      .+++++ ++.++++++.++.|++||..+++.........  .+..++|+ ++..++ +++.++.|.+||+.+++.. .+.
T Consensus         4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            356777 46789999999999999999998655554333  56788885 566554 5567899999999877653 232


Q ss_pred             -cC-----CccEEEEEEeCCCCEEEEEECC------------CeEEEEeCCCCce---eeeeeCCCc--EEEEecCCCeE
Q psy11885         95 -TH-----DQPIRAVEYSDEVNCILTGSWD------------TSVKMWDPRSSRC---VGNYTQPDK--VFTMSLCGEKF  151 (327)
Q Consensus        95 -~h-----~~~V~~l~~~~~~~~l~sgs~d------------~~i~lwdl~~~~~---~~~~~~~~~--~~~~~~~~~~~  151 (327)
                       .+     ...+..++|+|+|+++++++.+            +.|.+||+++++.   +..+..+..  .+.+++++. +
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence             22     2236789999999999998865            9999999988543   333333332  345777787 6


Q ss_pred             EEEeCCCeEEEEECCCCccceeeecccc--e--------------------eeeEEeEEeeCCCceEEEeecCeEEEEEc
Q psy11885        152 VVGTAGRKVCIWDLRNMGYIMQRRESSL--K--------------------FQTRCIKCFPNKQGYVLSSIEGRAAVEYL  209 (327)
Q Consensus       152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~~--~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  209 (327)
                      ++++  +.|.+||+++.+..........  +                    ..+..+.+.++....... ..+...+..+
T Consensus       162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~  238 (349)
T 1jmx_B          162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT-ADLLYGYLSV  238 (349)
T ss_dssp             EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC-CEEEEEEEEE
T ss_pred             EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc-cccceeEEEE
Confidence            6654  3499999987664322111100  0                    011112222111000000 0000011111


Q ss_pred             cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec-CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCC
Q psy11885        210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  288 (327)
Q Consensus       210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp-d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspd  288 (327)
                      +..... .....+..+     +    ..+..++|+| ++++++++  ++.|.+||+.+++.+..+... ..+.+++||||
T Consensus       239 ~~~~~~-~~~~~~~~~-----~----~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~d  305 (349)
T 1jmx_B          239 DLKTGK-THTQEFADL-----T----ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKK  305 (349)
T ss_dssp             ETTTCC-EEEEEEEEC-----S----SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSS
T ss_pred             eccCCc-EEecccccC-----C----CcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCC
Confidence            211110 000000000     0    1356789999 99999988  889999999998877766432 34679999999


Q ss_pred             CCEEEEEEc
Q psy11885        289 GNVLAIACS  297 (327)
Q Consensus       289 g~~la~~~~  297 (327)
                      |++|++++.
T Consensus       306 g~~l~~~~~  314 (349)
T 1jmx_B          306 GDKLYLGGT  314 (349)
T ss_dssp             SSCEEEESB
T ss_pred             CCEEEEecC
Confidence            999988644

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=1.5e-18  Score=148.02  Aligned_cols=210  Identities=10%  Similarity=0.055  Sum_probs=147.8

Q ss_pred             EEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC-CceeeeeeCC--C--cEEEEecC
Q psy11885         73 SGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS-SRCVGNYTQP--D--KVFTMSLC  147 (327)
Q Consensus        73 sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-~~~~~~~~~~--~--~~~~~~~~  147 (327)
                      +++.|++|++||+.++....+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+  .  ....++++
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd   95 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD   95 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence            45679999999999887777777889999999999999999987 78999999998 7766554333  2  23677888


Q ss_pred             CCeEEEEe--CCCeEEEE--ECCCCccceeeecccceeeeEEeEEeeCCCceE-EEeecCeEEEEEccCCcccccceeee
Q psy11885        148 GEKFVVGT--AGRKVCIW--DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAF  222 (327)
Q Consensus       148 ~~~~~~~~--~d~~v~iw--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~  222 (327)
                      +..+++++  .++..+||  |+.+... ..... .  .....+.++|+++.++ ++..++...++.++......   ..+
T Consensus        96 g~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-~--~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~---~~~  168 (297)
T 2ojh_A           96 GALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK-N--LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE---TRL  168 (297)
T ss_dssp             SSEEEEEECTTTSSCEEEEEETTCCCC-EECCS-S--SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE---EEC
T ss_pred             CCEEEEEEeCCCCcceEEEEECCCCce-EEeec-C--CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc---eEc
Confidence            99999888  33445555  5444331 11111 1  1245667888887766 55667777777665432111   111


Q ss_pred             eeeeeccCCeeeEEEeeEEEEecCCCeEEEec-CCCeEEEEeCC-CceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        223 KCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIWDGF-NKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       223 ~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs-~dg~i~iWd~~-~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      ..+.         ..+.+++|+|+++.|+.++ .++.++||++. .+..+..+..+...+.+++|||||++|++++...
T Consensus       169 ~~~~---------~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  238 (297)
T 2ojh_A          169 THGE---------GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDA  238 (297)
T ss_dssp             CCSS---------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred             ccCC---------CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence            1111         1467899999999888665 58999999876 4556667777777899999999999999987653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.82  E-value=4.7e-17  Score=141.76  Aligned_cols=267  Identities=8%  Similarity=-0.001  Sum_probs=157.7

Q ss_pred             CCCCeeEEEEecCCCcEEEEEE-CCCcEEEEECCCCeE-EEEe-cCCCceeeEEEe-CCceEEEEecCC---cEEEEEcC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASS-WDCNVSLYDITNNNL-RLKY-AHSDPVLDCCFQ-DAVHSFSGGLDC---TLKMFDFN   86 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~-~d~~i~iwd~~~~~~-~~~~-~h~~~v~~~~~~-~~~~~~sgs~Dg---~i~vwd~~   86 (327)
                      +...+ .++|+|++ +++++++ .++.|.+||..++++ .... .+..+..+++|+ ++.+++++..++   .|.+||++
T Consensus        39 ~~~~~-~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~  116 (331)
T 3u4y_A           39 GYDFV-DTAITSDC-SNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL  116 (331)
T ss_dssp             CCCEE-EEEECSSS-CEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred             cCCcc-eEEEcCCC-CEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence            34556 99999965 5555555 489999999998875 4434 344444448885 777788555553   89999998


Q ss_pred             CCceeeeecCCccEEEEEEeCCCCEEEE-EECCCe-EEEEeCCCCcee-----eeeeCC--CcEEEEecCCCeEEEE-eC
Q psy11885         87 TQTETVIGTHDQPIRAVEYSDEVNCILT-GSWDTS-VKMWDPRSSRCV-----GNYTQP--DKVFTMSLCGEKFVVG-TA  156 (327)
Q Consensus        87 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s-gs~d~~-i~lwdl~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~-~~  156 (327)
                      ++.......+......++|+|+|+++++ ...++. |.+|++.....+     ..+...  ...+.++++++.++++ ..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  196 (331)
T 3u4y_A          117 KNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI  196 (331)
T ss_dssp             TTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT
T ss_pred             CCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC
Confidence            8765433333445689999999986554 456688 999998754332     111211  2345677778866554 46


Q ss_pred             CCeEEEEECCCCcc---ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCee
Q psy11885        157 GRKVCIWDLRNMGY---IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE  233 (327)
Q Consensus       157 d~~v~iwD~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~  233 (327)
                      ++.|++||+++.+.   +....   ....+..++++|+++.++++.. +...+..++...........+..+ ..... .
T Consensus       197 ~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~-~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~-~  270 (331)
T 3u4y_A          197 GNSIGILETQNPENITLLNAVG---TNNLPGTIVVSRDGSTVYVLTE-STVDVFNFNQLSGTLSFVKSFGHG-LLIDP-R  270 (331)
T ss_dssp             TTEEEEEECSSTTSCEEEEEEE---CSSCCCCEEECTTSSEEEEECS-SEEEEEEEETTTTEEEEEEEEECC-CCCCC-G
T ss_pred             CCeEEEEECCCCcccceeeecc---CCCCCceEEECCCCCEEEEEEc-CCCEEEEEECCCCceeeecccccc-cccCC-C
Confidence            88999999987664   22211   1123456778888875555543 233344455432211111111110 00000 0


Q ss_pred             eEEEeeEEEEecCCCeEEEe-cCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCC
Q psy11885        234 KIYPVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDG  289 (327)
Q Consensus       234 ~~~~v~~v~~spd~~~lasg-s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg  289 (327)
                      .....+.++|+||+++|+++ ..++.|++||+.+.. +..+...+..-....++||+
T Consensus       271 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          271 PLFGANQMALNKTETKLFISANISRELKVFTISGKV-VGYVAGIEANGGIAICHPDK  326 (331)
T ss_dssp             GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE-EEECTTCCCBSCEEECCCC-
T ss_pred             CcccccceEECCCCCEEEEecCCCCcEEEEEecCCc-ccceecccccCCeEEECCcc
Confidence            00012568999999988654 456799999997754 33333333222234555554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=2.8e-16  Score=139.88  Aligned_cols=283  Identities=10%  Similarity=0.040  Sum_probs=175.5

Q ss_pred             EEEecCCCcEEEEEEC-CC--cEEEEECCCCeEEEEec-CCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceee-ee
Q psy11885         21 VKFAPNSNQFLLASSW-DC--NVSLYDITNNNLRLKYA-HSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETV-IG   94 (327)
Q Consensus        21 i~fs~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~-h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~-~~   94 (327)
                      .+|+|++ ++|+.++. ++  .|.+||+.+++...... +...+...+|+ ++..++.++.++.|++||+.++.... ..
T Consensus        41 ~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           41 KCFTRDG-SKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CCBCTTS-CEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCC-CEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            7899965 66776665 66  48888999988665544 44444467885 78899999989999999999887643 33


Q ss_pred             cCCccEEEEE--EeCCCCEEEEE----------------------ECCCeEEEEeCCCCceeeeeeCCC--cEEEEec-C
Q psy11885         95 THDQPIRAVE--YSDEVNCILTG----------------------SWDTSVKMWDPRSSRCVGNYTQPD--KVFTMSL-C  147 (327)
Q Consensus        95 ~h~~~V~~l~--~~~~~~~l~sg----------------------s~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~-~  147 (327)
                      .+...+....  +++++..++..                      ..+..|.+||+.+++.........  ....+++ +
T Consensus       120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~d  199 (388)
T 3pe7_A          120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYD  199 (388)
T ss_dssp             CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTE
T ss_pred             chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCC
Confidence            4444444333  48899888743                      245789999999887654444333  2356777 7


Q ss_pred             CCeEEEEeCC------CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeec-Ce--EEEEEccCCcccccc
Q psy11885        148 GEKFVVGTAG------RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE-GR--AAVEYLDTGPEMQKM  218 (327)
Q Consensus       148 ~~~~~~~~~d------~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~i~~~~~~~~~~~~  218 (327)
                      +..++....+      ..|.++|+.+.+.. ...............++|+++.++..+.. +.  ..++.++........
T Consensus       200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~  278 (388)
T 3pe7_A          200 DSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ  278 (388)
T ss_dssp             EEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE
T ss_pred             CCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE
Confidence            8888776653      36888887654321 11111111123445688888777554442 32  236666654322111


Q ss_pred             eeeeeeeeeccCCeeeE-EEeeEEEEecCCCeEEEe---------cCCCeEEEEeCCCceeeeecCcCCc----------
Q psy11885        219 KYAFKCHRIKEDGIEKI-YPVNAISFHQEYNTFATG---------GSDGYVNIWDGFNKKRLCQFHRYDT----------  278 (327)
Q Consensus       219 ~~~~~~h~~~~~~~~~~-~~v~~v~~spd~~~lasg---------s~dg~i~iWd~~~~~~~~~~~~~~~----------  278 (327)
                      ...+..+       .+. .....++|+|||+.|+..         ..+..|++||+.+++. ..+..+..          
T Consensus       279 l~~~~~~-------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~  350 (388)
T 3pe7_A          279 LTSMPAC-------SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQ  350 (388)
T ss_dssp             EEEECCE-------EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSS
T ss_pred             EEcCCCc-------eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccc
Confidence            1111110       111 112345799999988854         4567899999987654 34433433          


Q ss_pred             -ceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEEEccccc
Q psy11885        279 -GITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTDQE  323 (327)
Q Consensus       279 -~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (327)
                       .+.+++|||||+.|+.++...          -..+||.+.+.++.
T Consensus       351 ~~~~~~~~spDg~~l~~~s~~~----------g~~~l~~~~l~~~~  386 (388)
T 3pe7_A          351 VTHPHPSFTPDDKQILFTSDVH----------GKPALYLATLPESV  386 (388)
T ss_dssp             TTCCCCEECTTSSEEEEEECTT----------SSCEEEEEECCGGG
T ss_pred             cCCCCccCCCCCCEEEEEecCC----------CceeEEEEECChhc
Confidence             467889999999999887432          12368888776654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=3.5e-16  Score=138.21  Aligned_cols=261  Identities=8%  Similarity=-0.015  Sum_probs=160.9

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECC----CcEEEEECCC--CeEEEEe---cCCCceeeEEEeCCceEEEEe-cCCcEEEE
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWD----CNVSLYDITN--NNLRLKY---AHSDPVLDCCFQDAVHSFSGG-LDCTLKMF   83 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d----~~i~iwd~~~--~~~~~~~---~h~~~v~~~~~~~~~~~~sgs-~Dg~i~vw   83 (327)
                      +...+..++|+|+ +++|++++.+    +.|.+|++..  +++....   .+......+++ ++..+++++ .+++|.+|
T Consensus        48 ~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEE
Confidence            4567788999996 5778888775    7999998865  5543222   24455666777 777777665 57899999


Q ss_pred             EcCCCcee----eeec-----------CCccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCCCce------e------ee-
Q psy11885         84 DFNTQTET----VIGT-----------HDQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRSSRC------V------GN-  134 (327)
Q Consensus        84 d~~~~~~~----~~~~-----------h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~~~~------~------~~-  134 (327)
                      ++......    ....           +...+.+++|+|+|++++.+. .++.|++|++.....      +      .. 
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99753211    1111           123458899999999776665 489999998865331      1      11 


Q ss_pred             -eeCCC--cEEEEecCCCeEEEEe-CCCeEEEEECCCCccceeeecccc---eeeeEEeEEeeCCCceEEEeec--CeEE
Q psy11885        135 -YTQPD--KVFTMSLCGEKFVVGT-AGRKVCIWDLRNMGYIMQRRESSL---KFQTRCIKCFPNKQGYVLSSIE--GRAA  205 (327)
Q Consensus       135 -~~~~~--~~~~~~~~~~~~~~~~-~d~~v~iwD~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~  205 (327)
                       .....  ..+.++++++.++++. .++.|.+||++++...........   ......++++|+++.++++...  +.+.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence             11111  2456778888887776 689999999975432111111111   1123577888888876665544  5566


Q ss_pred             EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec-CCCeEEEE--eCCCceeeeecCc-CCcceE
Q psy11885        206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIW--DGFNKKRLCQFHR-YDTGIT  281 (327)
Q Consensus       206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs-~dg~i~iW--d~~~~~~~~~~~~-~~~~v~  281 (327)
                      ++.++...........+..      +    ..+..++|+|||++|++++ .++.|.+|  |..+++....... +...+.
T Consensus       286 v~~~~~~~g~~~~~~~~~~------g----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~  355 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQLT------G----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV  355 (361)
T ss_dssp             EEEECTTTCCEEEEEEEEC------S----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred             EEEEcCCCCcEEEeeEecC------C----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence            6555422111111111110      0    1356899999999888877 57899996  5556665443322 233578


Q ss_pred             EEEEC
Q psy11885        282 SLCFS  286 (327)
Q Consensus       282 ~l~fs  286 (327)
                      ||+|.
T Consensus       356 ~v~~~  360 (361)
T 3scy_A          356 CLKFV  360 (361)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=3e-17  Score=158.20  Aligned_cols=263  Identities=10%  Similarity=0.037  Sum_probs=171.5

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCC----ceeeEEEe-CCceEEEEec---------CCcEEEEE
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSD----PVLDCCFQ-DAVHSFSGGL---------DCTLKMFD   84 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~----~v~~~~~~-~~~~~~sgs~---------Dg~i~vwd   84 (327)
                      ..++|+|++ +++++ +.|++|++||+.+++......+..    .+.+++|+ ++.++++++.         |+.|++||
T Consensus        19 ~~~~~s~dg-~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           19 FFPNWISGQ-EYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCCEESSSS-EEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CccEECCCC-eEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            378999965 65554 469999999999998766554332    38889995 7888887776         78999999


Q ss_pred             cCCCce---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC--C-------------------c
Q psy11885         85 FNTQTE---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP--D-------------------K  140 (327)
Q Consensus        85 ~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~--~-------------------~  140 (327)
                      ++++..   ..+   ...+..++|+|||+.|+.+. |+.|++||+.++++.......  .                   .
T Consensus        97 ~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A           97 LSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             TTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred             CCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence            988765   333   34688899999999999886 789999999888765432111  1                   2


Q ss_pred             EEEEecCCCeEEEEeCCC----------------------------------eEEEEECCCCccc--eeeec----ccce
Q psy11885        141 VFTMSLCGEKFVVGTAGR----------------------------------KVCIWDLRNMGYI--MQRRE----SSLK  180 (327)
Q Consensus       141 ~~~~~~~~~~~~~~~~d~----------------------------------~v~iwD~~~~~~~--~~~~~----~~~~  180 (327)
                      ...++++|+.|++++.|.                                  .|++||+.+.+..  .....    ....
T Consensus       173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            467889999999887552                                  7889999876531  01000    0112


Q ss_pred             eeeEEeEEeeCCCceEEEee--cCeEEEEEcc----CCcccccceee--eeeeeeccCCeeeEEEee-----EEEEecCC
Q psy11885        181 FQTRCIKCFPNKQGYVLSSI--EGRAAVEYLD----TGPEMQKMKYA--FKCHRIKEDGIEKIYPVN-----AISFHQEY  247 (327)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~----~~~~~~~~~~~--~~~h~~~~~~~~~~~~v~-----~v~~spd~  247 (327)
                      .....++++|++..++....  .+...++.++    ...........  ...|.         ..+.     .++|+|||
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT---------GWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS---------SCSSSSSCCCCEECTTS
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC---------ceEccccCCccEECCCC
Confidence            23456778888543333222  2335566666    33221111110  01111         1233     68999999


Q ss_pred             CeEEE--ecCCC--eEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        248 NTFAT--GGSDG--YVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       248 ~~las--gs~dg--~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      +.|+.  +..+|  .|++||+.+++ ...+..+...+..+.++ ||+.|+..+..
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~  376 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNE  376 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred             CeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence            96653  44555  57777876655 44555555567888888 88888877654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.78  E-value=2.2e-16  Score=138.71  Aligned_cols=245  Identities=8%  Similarity=0.040  Sum_probs=152.1

Q ss_pred             CCCeeEEEEecCCCcEEEEEEC--CCcEEEEECCCCeEEEE---ecCCCceeeEEEe-CCceEEEEe-cCCcEEEEEcCC
Q psy11885         15 EDGITAVKFAPNSNQFLLASSW--DCNVSLYDITNNNLRLK---YAHSDPVLDCCFQ-DAVHSFSGG-LDCTLKMFDFNT   87 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~---~~h~~~v~~~~~~-~~~~~~sgs-~Dg~i~vwd~~~   87 (327)
                      ...+..++|+|++ ++++++..  ++.|++||+.+++....   ..+...+..++|+ ++..+++++ .+++|++|++..
T Consensus        39 ~~~p~~~a~spdg-~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           39 TQNPTYLALSAKD-CLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             CSCCCCEEECTTC-EEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             cCCcceEEEccCC-eEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            3567789999965 54444332  68999999987764322   3466678889995 677788777 679999999963


Q ss_pred             -Cceeeee--cC----------CccEEEEEEeCCCCEEEEEECCCeEEEEeCC-CCceee--eeeCC----CcEEEEecC
Q psy11885         88 -QTETVIG--TH----------DQPIRAVEYSDEVNCILTGSWDTSVKMWDPR-SSRCVG--NYTQP----DKVFTMSLC  147 (327)
Q Consensus        88 -~~~~~~~--~h----------~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~-~~~~~~--~~~~~----~~~~~~~~~  147 (327)
                       +....+.  .+          ...+.+++|+|+|+.+++...++.|++||+. +++...  .+..+    ...+.++++
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd  197 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD  197 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTT
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCC
Confidence             2222211  11          2248889999999966666678999999998 454322  12221    123577888


Q ss_pred             CCeEEE-EeCCCeEEEEECCC--Cccceeeecccce------eeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCccccc
Q psy11885        148 GEKFVV-GTAGRKVCIWDLRN--MGYIMQRRESSLK------FQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQK  217 (327)
Q Consensus       148 ~~~~~~-~~~d~~v~iwD~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~  217 (327)
                      |+.+++ ...++.|++||+..  ++..........+      .....+++.|+++.++++. .++.+.++.++..... .
T Consensus       198 g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~-~  276 (347)
T 3hfq_A          198 GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL-T  276 (347)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE-E
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE-E
Confidence            886665 45678999999874  2211111111111      2346678888887664444 4566666554421111 1


Q ss_pred             ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC-CCeEEEE--eCCCceee
Q psy11885        218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DGYVNIW--DGFNKKRL  270 (327)
Q Consensus       218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~-dg~i~iW--d~~~~~~~  270 (327)
                      ....+..+.         ..+..++|+||+++|++++. ++.|.+|  |..+++..
T Consensus       277 ~~~~~~~~~---------~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          277 LIQQISTEG---------DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEEEECSS---------SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EeEEEecCC---------CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            111111110         12568999999998887765 4899999  55556543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.78  E-value=9.5e-16  Score=135.41  Aligned_cols=260  Identities=10%  Similarity=0.032  Sum_probs=160.6

Q ss_pred             CcEEEEEEC----CCcEEEEEC--CCCeEEEEe-cCCCceeeEEEe-CCceEEEEecC----CcEEEEEcCCC--ceeee
Q psy11885         28 NQFLLASSW----DCNVSLYDI--TNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLD----CTLKMFDFNTQ--TETVI   93 (327)
Q Consensus        28 ~~~l~s~~~----d~~i~iwd~--~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~D----g~i~vwd~~~~--~~~~~   93 (327)
                      ..++++|++    ++.|.+|++  .++++.... .+...+..++|+ ++..+++++.+    +.|.+|+++..  ....+
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            356667754    568999976  456543221 156677788995 67788888876    79999998763  33222


Q ss_pred             ---ecCCccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCCCceeeee----e--CC-----------CcEEEEecCCCeEE
Q psy11885         94 ---GTHDQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRSSRCVGNY----T--QP-----------DKVFTMSLCGEKFV  152 (327)
Q Consensus        94 ---~~h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~~~~~~~~----~--~~-----------~~~~~~~~~~~~~~  152 (327)
                         ..+......+++  +++.+++++ .+++|.+|++.....+...    .  ..           .....++++++.++
T Consensus        93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~  170 (361)
T 3scy_A           93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL  170 (361)
T ss_dssp             EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred             eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence               234455677777  778777776 5889999999754332211    1  10           12367788888766


Q ss_pred             EEe-CCCeEEEEECCCCcc------cee-----eecccceeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccce
Q psy11885        153 VGT-AGRKVCIWDLRNMGY------IMQ-----RRESSLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMK  219 (327)
Q Consensus       153 ~~~-~d~~v~iwD~~~~~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~  219 (327)
                      ++. .++.|++|++.....      +..     .........++.++++|+++.++++. .++.+.++.++.+...  ..
T Consensus       171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~--~~  248 (361)
T 3scy_A          171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD--EI  248 (361)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE--EE
T ss_pred             EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE--Ee
Confidence            654 578999999875431      100     11111122346788888887665555 4566666555432210  01


Q ss_pred             eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC--CCeEEEEeCC--Cce--eeeecCcCCcceEEEEECCCCCEEE
Q psy11885        220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS--DGYVNIWDGF--NKK--RLCQFHRYDTGITSLCFSYDGNVLA  293 (327)
Q Consensus       220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~--dg~i~iWd~~--~~~--~~~~~~~~~~~v~~l~fspdg~~la  293 (327)
                      ..+..  ..    .+......++|+|||++|+++..  ++.|.+|++.  +++  .+..+.. ...+.+++|||||++|+
T Consensus       249 ~~~~~--~~----~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~  321 (361)
T 3scy_A          249 QTVAA--DT----VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLL  321 (361)
T ss_dssp             EEEES--CS----SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEE
T ss_pred             EEEec--CC----CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEE
Confidence            11110  00    00112468999999998866555  4899999985  343  3334433 34578999999999999


Q ss_pred             EEEcc
Q psy11885        294 IACSY  298 (327)
Q Consensus       294 ~~~~~  298 (327)
                      +++..
T Consensus       322 ~~~~~  326 (361)
T 3scy_A          322 VACRD  326 (361)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=5.8e-18  Score=153.66  Aligned_cols=153  Identities=14%  Similarity=0.127  Sum_probs=114.4

Q ss_pred             CCCCeeEEEEecCCCcEEE----EEECCCcEEEEECCCC--------e----EEEEecCCCceeeEEEe-C-CceEEEEe
Q psy11885         14 PEDGITAVKFAPNSNQFLL----ASSWDCNVSLYDITNN--------N----LRLKYAHSDPVLDCCFQ-D-AVHSFSGG   75 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~----s~~~d~~i~iwd~~~~--------~----~~~~~~h~~~v~~~~~~-~-~~~~~sgs   75 (327)
                      +.+.|++++|+|+ +++|+    +++.|++|+|||+.++        +    .....+|...|.+++|+ + +..+++++
T Consensus        91 ~~~~v~~l~~spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           91 MKFPIHHLALSCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CSSCEEEEEECTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             CCCcccEEEEcCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            3467999999996 46777    7888999999998654        1    22233588999999996 3 67899999


Q ss_pred             cCCcEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC--------CcEEEEec
Q psy11885         76 LDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP--------DKVFTMSL  146 (327)
Q Consensus        76 ~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~--------~~~~~~~~  146 (327)
                      .||+|++||++++... ....|...|.+++|+|+|++|++|+.|++|++||++ ++....+..+        ..+.++.+
T Consensus       170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w  248 (434)
T 2oit_A          170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLW  248 (434)
T ss_dssp             TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred             CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEE
Confidence            9999999999887543 345688899999999999999999999999999998 4444433221        14555655


Q ss_pred             CCC--eEEE-EeCCC------eEEEEECCCC
Q psy11885        147 CGE--KFVV-GTAGR------KVCIWDLRNM  168 (327)
Q Consensus       147 ~~~--~~~~-~~~d~------~v~iwD~~~~  168 (327)
                      .++  .+++ ...+|      .+++||+++.
T Consensus       249 ~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          249 IGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            543  3322 33332      4999999864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.75  E-value=7.5e-16  Score=135.07  Aligned_cols=229  Identities=10%  Similarity=0.025  Sum_probs=153.3

Q ss_pred             CCCceeeEEEe-CCceEEEEec-------CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeC
Q psy11885         56 HSDPVLDCCFQ-DAVHSFSGGL-------DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTG-SWDTSVKMWDP  126 (327)
Q Consensus        56 h~~~v~~~~~~-~~~~~~sgs~-------Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl  126 (327)
                      ....+..++|+ ++..++.++.       ++.|.+||..+++..........+..++++++++.++.+ ..++.|.+||+
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            34567788885 6677877664       568999999887654322233456789999999966554 55799999999


Q ss_pred             CCCceeeeeeCCC------------cEEEEecCCCeEEEEe--CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCC
Q psy11885        127 RSSRCVGNYTQPD------------KVFTMSLCGEKFVVGT--AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNK  192 (327)
Q Consensus       127 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (327)
                      ++++.+..+..+.            ..+.++++++.++++.  .++.|.+||+++.+.......  .......+.+.+++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN--TGKMSTGLALDSEG  196 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC--CCTTCCCCEEETTT
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC--CCCccceEEECCCC
Confidence            9998877765432            2356777888877765  478999999987764322210  11123567788888


Q ss_pred             CceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC-CCeEEEEeCCCceeee
Q psy11885        193 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DGYVNIWDGFNKKRLC  271 (327)
Q Consensus       193 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~-dg~i~iWd~~~~~~~~  271 (327)
                      +.++++..++.+.++....+...    ..+...   ..  .+...+..++|+|++++|++++. ++.|.+||..+++.+.
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~---~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  267 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADNKIL----SRKKLL---DD--GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA  267 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTTEEE----EEEECC---CS--SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCeEE----EEEEcC---CC--CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            87777777666655433332211    111110   00  01113567999999997766654 5999999999988777


Q ss_pred             ecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        272 QFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       272 ~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      .+.... + ..++|+|||++|++++.
T Consensus       268 ~~~~~~-~-~~~~~s~dg~~l~v~~~  291 (353)
T 3vgz_A          268 KVAAPE-S-LAVLFNPARNEAYVTHR  291 (353)
T ss_dssp             EEECSS-C-CCEEEETTTTEEEEEET
T ss_pred             EEEcCC-C-ceEEECCCCCEEEEEEC
Confidence            665433 2 57999999998877765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.74  E-value=1.9e-16  Score=149.05  Aligned_cols=222  Identities=10%  Similarity=0.054  Sum_probs=148.9

Q ss_pred             CCceeeEEEe-CCceEEEEec-CCcEEEEEcCCCceeeeecCC-ccEEEEEEeCCCCEEEEEEC---CCeEEEEeCCC--
Q psy11885         57 SDPVLDCCFQ-DAVHSFSGGL-DCTLKMFDFNTQTETVIGTHD-QPIRAVEYSDEVNCILTGSW---DTSVKMWDPRS--  128 (327)
Q Consensus        57 ~~~v~~~~~~-~~~~~~sgs~-Dg~i~vwd~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~sgs~---d~~i~lwdl~~--  128 (327)
                      ..+|.+++|+ ++.++++++. ||++++|+++++....+..|. ..+..++|+|| +.+++++.   +...++|.+..  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            4578999984 8899998877 999999999877666665555 68999999999 77777775   45556654432  


Q ss_pred             -CceeeeeeC--CCcEEEEecCCCe-EEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeec--C
Q psy11885        129 -SRCVGNYTQ--PDKVFTMSLCGEK-FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE--G  202 (327)
Q Consensus       129 -~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  202 (327)
                       +... .+..  .....+++++|+. +++...++.+.+||+.+++.......     .....+++|+++.++.++.+  +
T Consensus       100 ~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-----~~~~~~~spDG~~la~~~~~~~~  173 (582)
T 3o4h_A          100 PGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-----PGFGFVSDIRGDLIAGLGFFGGG  173 (582)
T ss_dssp             TTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-----SSCEEEEEEETTEEEEEEEEETT
T ss_pred             CCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-----CCceEEECCCCCEEEEEEEcCCC
Confidence             2222 2221  2335678888865 33344445555999987643211111     11466788999888866654  3


Q ss_pred             eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCC--eEEEEeCCCceeeeecCcCCcce
Q psy11885        203 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG--YVNIWDGFNKKRLCQFHRYDTGI  280 (327)
Q Consensus       203 ~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg--~i~iWd~~~~~~~~~~~~~~~~v  280 (327)
                      ...++.++.......   .+..|.         ..+..++|||||+.|++++.++  .|++||+.+++.. .+..+...+
T Consensus       174 ~~~i~~~d~~~g~~~---~l~~~~---------~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~  240 (582)
T 3o4h_A          174 RVSLFTSNLSSGGLR---VFDSGE---------GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDF  240 (582)
T ss_dssp             EEEEEEEETTTCCCE---EECCSS---------CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHH
T ss_pred             CeEEEEEcCCCCCce---EeecCC---------CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcCh
Confidence            345666664322111   111111         1467899999999999888888  8999999888776 666666666


Q ss_pred             EEEE--------ECCCCCEEEEEEcc
Q psy11885        281 TSLC--------FSYDGNVLAIACSY  298 (327)
Q Consensus       281 ~~l~--------fspdg~~la~~~~~  298 (327)
                      ..++        |||||+++++++.+
T Consensus       241 ~~~~~~~~~~~~~spdg~~~~~~~~~  266 (582)
T 3o4h_A          241 SSYRPTAITWLGYLPDGRLAVVARRE  266 (582)
T ss_dssp             HHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred             hhhhhccccceeEcCCCcEEEEEEcC
Confidence            6677        99999877777654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.73  E-value=9.9e-16  Score=135.77  Aligned_cols=266  Identities=9%  Similarity=0.037  Sum_probs=158.7

Q ss_pred             EEEEEECC--CcEEEEEC--CCCeEEEEe----cCCCceeeEEEe-CCceEEEEecCCcEEEEEcC-CCceeeeecCC--
Q psy11885         30 FLLASSWD--CNVSLYDI--TNNNLRLKY----AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN-TQTETVIGTHD--   97 (327)
Q Consensus        30 ~l~s~~~d--~~i~iwd~--~~~~~~~~~----~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~-~~~~~~~~~h~--   97 (327)
                      .|++|+..  +.|.+|++  .++++....    .....+..++|+ ++.++++++.+ .|.+|+++ ++....+..+.  
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            46667664  46887765  566653321    133467788885 77788888888 99999997 55443222211  


Q ss_pred             ccEEEEEEeCCCCE--EEEEE-------------CCCeEEEEeCC-CCceeeeee-----CC--CcEEEEecCCCeEEEE
Q psy11885         98 QPIRAVEYSDEVNC--ILTGS-------------WDTSVKMWDPR-SSRCVGNYT-----QP--DKVFTMSLCGEKFVVG  154 (327)
Q Consensus        98 ~~V~~l~~~~~~~~--l~sgs-------------~d~~i~lwdl~-~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~  154 (327)
                      +.+..++|+|+|+.  ++++.             .++++++|++. .++....+.     ..  .....++++|+.++++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            23456889999984  44553             68999999997 455443322     11  2245677888888776


Q ss_pred             eC-CCeEEEEECC-CCccceeeecc--cceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccc-eeeeeeeeec
Q psy11885        155 TA-GRKVCIWDLR-NMGYIMQRRES--SLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKM-KYAFKCHRIK  228 (327)
Q Consensus       155 ~~-d~~v~iwD~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~h~~~  228 (327)
                      .. ++.|++||+. +++........  .....++.++++|+++.++++.. ++.+.++.++........ ...+.  ...
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~--~~~  240 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP--LIP  240 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE--SSC
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE--cCC
Confidence            54 6799999997 55432111110  00123567888888877666553 556666655532111000 00000  000


Q ss_pred             cCCeeeEE------EeeEEE-EecCCCeEEEecCC-C-----eEEEEeCC-Cceeee---ecCcCCcceEEEEECC---C
Q psy11885        229 EDGIEKIY------PVNAIS-FHQEYNTFATGGSD-G-----YVNIWDGF-NKKRLC---QFHRYDTGITSLCFSY---D  288 (327)
Q Consensus       229 ~~~~~~~~------~v~~v~-~spd~~~lasgs~d-g-----~i~iWd~~-~~~~~~---~~~~~~~~v~~l~fsp---d  288 (327)
                      ....++..      .+..++ |+|||++|+++..+ .     +|.+|++. +++...   ....+......++|||   |
T Consensus       241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d  320 (365)
T 1jof_A          241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS  320 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred             CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence            00000000      366899 99999998876543 2     89999986 555332   1222333457899999   8


Q ss_pred             CCEEEEEEcc
Q psy11885        289 GNVLAIACSY  298 (327)
Q Consensus       289 g~~la~~~~~  298 (327)
                      |++|++++.+
T Consensus       321 g~~l~v~~~~  330 (365)
T 1jof_A          321 DEWMAITDDQ  330 (365)
T ss_dssp             TTEEEEECSS
T ss_pred             CCEEEEEEcC
Confidence            9999998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.72  E-value=2.6e-15  Score=131.30  Aligned_cols=228  Identities=10%  Similarity=0.056  Sum_probs=142.5

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec--C-----CCceeeEEEe-CCceEEEEecC-----------
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA--H-----SDPVLDCCFQ-DAVHSFSGGLD-----------   77 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--h-----~~~v~~~~~~-~~~~~~sgs~D-----------   77 (327)
                      .+..++|+|++..++++...++.|.+||+.+++......  +     ...+..++|+ ++.++++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            578999999754455566678999999999988654433  2     1236778885 77888888765           


Q ss_pred             -CcEEEEEcCCCce---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC--------------
Q psy11885         78 -CTLKMFDFNTQTE---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD--------------  139 (327)
Q Consensus        78 -g~i~vwd~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~--------------  139 (327)
                       +.|.+||+.+++.   .....+...+.+++|+|+++ ++.++.  .|.+||+++++.+..+....              
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF  200 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred             CCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceee
Confidence             8999999987432   12223344688899999999 666544  49999999988776654321              


Q ss_pred             -----------cEEEEecC--C---------C--eEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEee-CCCc
Q psy11885        140 -----------KVFTMSLC--G---------E--KFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFP-NKQG  194 (327)
Q Consensus       140 -----------~~~~~~~~--~---------~--~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  194 (327)
                                 ....+...  +         .  .+.....++.+++|++..           .......+.++| +++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~sp~dg~~  269 (349)
T 1jmx_B          201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-----------LTELYFTGLRSPKDPNQ  269 (349)
T ss_dssp             CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-----------CSSCEEEEEECSSCTTE
T ss_pred             ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc-----------CCCcceeeEecCCCCCE
Confidence                       00111111  0         0  011222334455554421           111234566778 7766


Q ss_pred             eEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC
Q psy11885        195 YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH  274 (327)
Q Consensus       195 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~  274 (327)
                      ++++  ++.+.++.......    ...+...          ..+.+++|+|++++|++++.++.|++||..+++.+..+.
T Consensus       270 l~~~--~~~v~~~d~~~~~~----~~~~~~~----------~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          270 IYGV--LNRLAKYDLKQRKL----IKAANLD----------HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             EEEE--ESEEEEEETTTTEE----EEEEECS----------SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EEEE--cCeEEEEECccCeE----EEEEcCC----------CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            6655  55555543332221    1111100          125689999999999988889999999999988777664

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=2.6e-14  Score=124.85  Aligned_cols=226  Identities=10%  Similarity=0.055  Sum_probs=151.5

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECC------------------------CcEEEEECCCCeEEEEec--CCCceeeEEEe-
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWD------------------------CNVSLYDITNNNLRLKYA--HSDPVLDCCFQ-   66 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d------------------------~~i~iwd~~~~~~~~~~~--h~~~v~~~~~~-   66 (327)
                      .-+.+.+|+|+|+ ++++++...+                        ++|.+||..++++.....  +-..+..+++. 
T Consensus        22 ~l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           22 LPGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CCSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred             ecCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence            4478999999996 5677777666                        479999999888665544  23467788885 


Q ss_pred             CCceEEEEecCCcEEEEEcCCCc--eeee---------ecCCccEEEEEEeC-CCCEEEEEE-CCCeEEEEeCCCCceee
Q psy11885         67 DAVHSFSGGLDCTLKMFDFNTQT--ETVI---------GTHDQPIRAVEYSD-EVNCILTGS-WDTSVKMWDPRSSRCVG  133 (327)
Q Consensus        67 ~~~~~~sgs~Dg~i~vwd~~~~~--~~~~---------~~h~~~V~~l~~~~-~~~~l~sgs-~d~~i~lwdl~~~~~~~  133 (327)
                      ++...++...++.|++||.+...  ...+         ..+-.....|+++| +++.+++.+ .+++|++|| .+++.+.
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~  179 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT  179 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence            66766777778999999987652  2223         12334678999999 788777776 689999999 4566655


Q ss_pred             eeeCC-------------CcEEEEecC-CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe
Q psy11885        134 NYTQP-------------DKVFTMSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS  199 (327)
Q Consensus       134 ~~~~~-------------~~~~~~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (327)
                      .+...             ...+++++. +..+++...++.|++||..+++.+......                      
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~----------------------  237 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA----------------------  237 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT----------------------
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc----------------------
Confidence            54311             123556666 455566667889999998744321100000                      


Q ss_pred             ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec------CCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885        200 IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ------EYNTFATGGSDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       200 ~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp------d~~~lasgs~dg~i~iWd~~~~~~~~~~  273 (327)
                                ..+.                       .+.+++|+|      +++.+++.+.+..|++||..+++.+..+
T Consensus       238 ----------~~~~-----------------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          238 ----------SFGR-----------------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF  284 (329)
T ss_dssp             ----------TTTT-----------------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred             ----------ccCC-----------------------CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence                      0000                       122344455      5665666666779999999999888776


Q ss_pred             C---cCCcceEEEEECCCCCEEEEEE
Q psy11885        274 H---RYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       274 ~---~~~~~v~~l~fspdg~~la~~~  296 (327)
                      .   .+......|+|+|||+++++..
T Consensus       285 ~~~~~~~~~p~~ia~~~dG~lyvad~  310 (329)
T 3fvz_A          285 KPVRKHFDMPHDIVASEDGTVYIGDA  310 (329)
T ss_dssp             CCSSSCCSSEEEEEECTTSEEEEEES
T ss_pred             cCCCCccCCeeEEEECCCCCEEEEEC
Confidence            3   4445679999999997666554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=7.1e-15  Score=142.20  Aligned_cols=272  Identities=8%  Similarity=-0.005  Sum_probs=166.2

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCce-----eeEEEe-CCceEEEEecC---------Cc
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPV-----LDCCFQ-DAVHSFSGGLD---------CT   79 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v-----~~~~~~-~~~~~~sgs~D---------g~   79 (327)
                      .....++|+|+ +++++++  |++|++||+.+++..... .|....     ....|+ ++.++++++.+         +.
T Consensus        17 ~~~~~~~w~~d-g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           17 LKLYSLRWISD-HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCEEECSS-SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccccccEECCC-CcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            35678999996 4788775  999999999998865444 344322     235675 78888888766         55


Q ss_pred             EEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee-C-CC------------------
Q psy11885         80 LKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-Q-PD------------------  139 (327)
Q Consensus        80 i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~-~-~~------------------  139 (327)
                      +.+||+.++....+..|...+...+|||||+.|+.++ |+.|.+||+.+++..+... . ..                  
T Consensus        94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            6799999987766777778899999999999998885 6899999998876543211 1 11                  


Q ss_pred             -cEEEEecCCCeEEEEeCCC------------------------------------eEEEEECCC---Ccc--ceeeecc
Q psy11885        140 -KVFTMSLCGEKFVVGTAGR------------------------------------KVCIWDLRN---MGY--IMQRRES  177 (327)
Q Consensus       140 -~~~~~~~~~~~~~~~~~d~------------------------------------~v~iwD~~~---~~~--~~~~~~~  177 (327)
                       ....++++|+.|+..+.|.                                    +|++||+.+   .+.  .......
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence             1256889999888765321                                    578888887   521  1111110


Q ss_pred             ----cceeeeEEeEEeeCCCceEEEee--cCeEEEEEccCCccc----ccceeee--eeeeeccCCeeeEEEeeEEEEec
Q psy11885        178 ----SLKFQTRCIKCFPNKQGYVLSSI--EGRAAVEYLDTGPEM----QKMKYAF--KCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       178 ----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~----~~~~~~~--~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                          ........++++|+++.++....  .+...|+.++.....    ......+  ..|..   ... ......++|+|
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~---~v~-~~~~~~p~fsp  328 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTG---WVG-RFRPSEPHFTL  328 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSS---CSS-SSSCCCCEECT
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCc---eEc-cCcCCCceEcC
Confidence                01223456778888764444333  233445555532211    0000000  11110   000 00022678999


Q ss_pred             CCCeEE-EecC-CC--eEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        246 EYNTFA-TGGS-DG--YVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       246 d~~~la-sgs~-dg--~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      ||+.|+ ..++ +|  .|++||...++ ..++......|..+. ++|++.|+..+.
T Consensus       329 DG~~l~~~~s~~~G~~~l~~~~~~~~~-~~~lT~g~~~v~~~~-~~d~~~i~f~~~  382 (740)
T 4a5s_A          329 DGNSFYKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGIE-ALTSDYLYYISN  382 (740)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEETTCSS-CEESCCSSSCEEEEE-EECSSEEEEEES
T ss_pred             CCCEEEEEEEcCCCceEEEEEECCCCc-eEecccCCEEEEEEE-EEeCCEEEEEEe
Confidence            999877 6654 44  68888987654 334444444555543 245776666554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.70  E-value=5.3e-16  Score=149.48  Aligned_cols=229  Identities=10%  Similarity=0.001  Sum_probs=146.1

Q ss_pred             eEEEeCCceEEEEecCCcEEEEEcCCCceeeeec-CCc---cEEEEEEeCCCCEEEEEEC---------CCeEEEEeCCC
Q psy11885         62 DCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGT-HDQ---PIRAVEYSDEVNCILTGSW---------DTSVKMWDPRS  128 (327)
Q Consensus        62 ~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~-h~~---~V~~l~~~~~~~~l~sgs~---------d~~i~lwdl~~  128 (327)
                      +++|++...++..+.|++|++||+.++....+.. |..   .+.+++|||||++|++++.         |++|++||+.+
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~   99 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN   99 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence            5678533355655679999999999887655443 332   3899999999999998876         78999999999


Q ss_pred             Ccee--eeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccce----------------eeeEEeEEee
Q psy11885        129 SRCV--GNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK----------------FQTRCIKCFP  190 (327)
Q Consensus       129 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~----------------~~~~~~~~~~  190 (327)
                      ++.+  ..+........++++|+.++.+. ++.|++||+.+++...........                .....+.++|
T Consensus       100 g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP  178 (719)
T 1z68_A          100 GEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP  178 (719)
T ss_dssp             TEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred             CccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence            8773  23333344578899999998875 789999999876532111011000                0013678899


Q ss_pred             CCCceEEEeecC--------------------------------eEEEEEccCCcccccceeeeee-eeeccCCeeeEEE
Q psy11885        191 NKQGYVLSSIEG--------------------------------RAAVEYLDTGPEMQKMKYAFKC-HRIKEDGIEKIYP  237 (327)
Q Consensus       191 ~~~~~~~~~~~~--------------------------------~~~i~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~  237 (327)
                      +++.++.++.+.                                ...++.|+...........+.. ....    .+...
T Consensus       179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~----~~~~~  254 (719)
T 1z68_A          179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA----SSDYY  254 (719)
T ss_dssp             TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH----TSCEE
T ss_pred             CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC----CCcce
Confidence            998888776542                                1234444433221100000000 0000    12235


Q ss_pred             eeEEEEecCCCeEEEecC--C--CeEEEEe----CCCceeeeec----CcCCcceE-----EEEECCCCCEEEEE
Q psy11885        238 VNAISFHQEYNTFATGGS--D--GYVNIWD----GFNKKRLCQF----HRYDTGIT-----SLCFSYDGNVLAIA  295 (327)
Q Consensus       238 v~~v~~spd~~~lasgs~--d--g~i~iWd----~~~~~~~~~~----~~~~~~v~-----~l~fspdg~~la~~  295 (327)
                      +.+++||||++++++...  +  ..|++||    ..+++....+    ..+...+.     .++|||||+.|+..
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence            788999999887777432  2  3588899    7777665544    34555565     78999999977663

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.70  E-value=7.1e-15  Score=130.23  Aligned_cols=241  Identities=9%  Similarity=0.057  Sum_probs=151.7

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECC-CCeEEEEecCC--CceeeEEEe-CCce--EEEEe-------------c
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDIT-NNNLRLKYAHS--DPVLDCCFQ-DAVH--SFSGG-------------L   76 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~--~~v~~~~~~-~~~~--~~sgs-------------~   76 (327)
                      ..+..++|+|+ +++|++++.+ .|.+|++. ++++.....+.  +.+..++|+ ++.+  +++++             .
T Consensus        40 ~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           40 EPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            46889999996 5788888887 99999997 77754333221  335557775 5663  44553             6


Q ss_pred             CCcEEEEEcCC-Ccee-eee----cCCccEEEEEEeCCCCEEEEEEC-CCeEEEEeCC-CCcee--eeeeC---CC--cE
Q psy11885         77 DCTLKMFDFNT-QTET-VIG----THDQPIRAVEYSDEVNCILTGSW-DTSVKMWDPR-SSRCV--GNYTQ---PD--KV  141 (327)
Q Consensus        77 Dg~i~vwd~~~-~~~~-~~~----~h~~~V~~l~~~~~~~~l~sgs~-d~~i~lwdl~-~~~~~--~~~~~---~~--~~  141 (327)
                      ++++++|+++. +... .+.    .+...+..++|+|+|++++++.. ++.|++||+. +++..  ..+..   ..  ..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            89999999974 3322 222    24567899999999998887764 6899999998 67643  33331   12  23


Q ss_pred             EEEecCCCeEEEEeC-CCeEEEEECC--CCccce--e-eec--ccce--e-------eeEEeE-EeeCCCceEEEeecC-
Q psy11885        142 FTMSLCGEKFVVGTA-GRKVCIWDLR--NMGYIM--Q-RRE--SSLK--F-------QTRCIK-CFPNKQGYVLSSIEG-  202 (327)
Q Consensus       142 ~~~~~~~~~~~~~~~-d~~v~iwD~~--~~~~~~--~-~~~--~~~~--~-------~~~~~~-~~~~~~~~~~~~~~~-  202 (327)
                      +.++++|+.++++.. ++.|.+|++.  +++...  . ...  ....  .       ....++ ++|+++.++++..+. 
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~  277 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence            567788888887764 6899999865  333211  0 100  0000  1       245677 888887766655433 


Q ss_pred             -----eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec---CCCeEEEecCC-CeEEEEeCCCc
Q psy11885        203 -----RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ---EYNTFATGGSD-GYVNIWDGFNK  267 (327)
Q Consensus       203 -----~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp---d~~~lasgs~d-g~i~iWd~~~~  267 (327)
                           .+.++..+..............+.         ..+..++|+|   ||++|++++.+ ++|++|++...
T Consensus       278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~~---------~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          278 FELQGYIAGFKLRDCGSIEKQLFLSPTPT---------SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEEECSS---------CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCeEEEEEECCCCCEEEeeeeeecCC---------CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence                 455554432111110000011010         0245789999   89999998875 89999987654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.69  E-value=2e-15  Score=134.42  Aligned_cols=264  Identities=10%  Similarity=0.025  Sum_probs=161.2

Q ss_pred             eeEEEEecCCCcEEEEEE-CC--CcEEEEECCCCeEEEEecCCCcee-eEEEe-CCceEEEEecCCcEEEEEcCCCceee
Q psy11885         18 ITAVKFAPNSNQFLLASS-WD--CNVSLYDITNNNLRLKYAHSDPVL-DCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETV   92 (327)
Q Consensus        18 I~~i~fs~~~~~~l~s~~-~d--~~i~iwd~~~~~~~~~~~h~~~v~-~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~   92 (327)
                      +..++|+|++ ++|+... .+  ..|.+||+.+++......+...+. .+.|+ ++..++.++.++.|.+||+.++....
T Consensus        38 ~~~~~~SpdG-~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           38 FYQKCFTQDG-KKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             TTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eecCcCCCCC-CEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            6788999975 5555543 33  368889999988655544444433 36775 78889898889999999998876543


Q ss_pred             ee-cCCccEEE-------------------EEEeCCCCEEEEE-----ECCCeEEEEeCCCCceeeeeeCCCc--EEEEe
Q psy11885         93 IG-THDQPIRA-------------------VEYSDEVNCILTG-----SWDTSVKMWDPRSSRCVGNYTQPDK--VFTMS  145 (327)
Q Consensus        93 ~~-~h~~~V~~-------------------l~~~~~~~~l~sg-----s~d~~i~lwdl~~~~~~~~~~~~~~--~~~~~  145 (327)
                      +. .+......                   +.++|+++.++.+     ..+..|.+||+.+++..........  ...++
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s  196 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR  196 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence            32 23332222                   2456777665543     4567899999998876544433333  34566


Q ss_pred             c-CCCeEEEEeCC------CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeec-Ce--EEEEEccCCccc
Q psy11885        146 L-CGEKFVVGTAG------RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE-GR--AAVEYLDTGPEM  215 (327)
Q Consensus       146 ~-~~~~~~~~~~d------~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~i~~~~~~~~~  215 (327)
                      + ++..++..+.+      ..|.+||+.+.+.. .............+.++|+++.++..+.. +.  ..++.++.....
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~  275 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE  275 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred             CCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence            6 56667666543      36888898654321 11111111224556788888776665443 22  336666643321


Q ss_pred             ccceeeeeeeeeccCCeeeEEEeeEEEEec-CCCeEEEec----------------CCCeEEEEeCCCceeeeecCcCCc
Q psy11885        216 QKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGG----------------SDGYVNIWDGFNKKRLCQFHRYDT  278 (327)
Q Consensus       216 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp-d~~~lasgs----------------~dg~i~iWd~~~~~~~~~~~~~~~  278 (327)
                      ......+.             ... ++|+| |++.+++++                .+..|++||..+++. ..+..+..
T Consensus       276 ~~~l~~~~-------------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~  340 (396)
T 3c5m_A          276 NEEVMVMP-------------PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHST  340 (396)
T ss_dssp             EEEEEECC-------------SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCC
T ss_pred             eEEeeeCC-------------CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCC
Confidence            11100000             012 78999 999888754                347899999887653 33333332


Q ss_pred             -----------ceEEEEECCCCCEEEEEEcc
Q psy11885        279 -----------GITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       279 -----------~v~~l~fspdg~~la~~~~~  298 (327)
                                 .+..++|||||+.|+.++..
T Consensus       341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~  371 (396)
T 3c5m_A          341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDF  371 (396)
T ss_dssp             CCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             ccccccccccCCCCCceEccCCCeEEEEecC
Confidence                       25668999999999988753

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.68  E-value=9e-14  Score=121.21  Aligned_cols=289  Identities=8%  Similarity=-0.038  Sum_probs=175.0

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee-
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI-   93 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~-   93 (327)
                      ..|.+++|++++ ..++..+.++.++.|  ..........+...+.+++|. ++..++++..++.|.+||.+++....+ 
T Consensus         6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            6 QDLPTLFYSGKS-NSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCCBCCSCGGG-GCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             cccceeeecCCc-cceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            468889999954 556666778999999  233333444555567788885 555555778889999999987765433 


Q ss_pred             ecCCccEEEEEEeCCCCEEEEEECC----CeEEEEeCCCCceeeeee---CCCcE--EEEecCCCeEEEEeC------CC
Q psy11885         94 GTHDQPIRAVEYSDEVNCILTGSWD----TSVKMWDPRSSRCVGNYT---QPDKV--FTMSLCGEKFVVGTA------GR  158 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~~~l~sgs~d----~~i~lwdl~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~------d~  158 (327)
                      ..+...+.+++++++++++++...+    +.|.+||.++++....+.   ....+  +.+++.+..+++...      .+
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  162 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG  162 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence            3566789999999999887777666    689999998776542222   11223  345566655554432      24


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEE-eecCeEEEEEccCCc-ccccceeeeeeeeeccCCeeeEE
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGP-EMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      .|..+|..+.+....  .... .....+++.++++.++++ ..++.+.++..+... .......... ....  +  + .
T Consensus       163 ~l~~~~~~~~~~~~~--~~~~-~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~-~~~~--~--~-~  233 (333)
T 2dg1_A          163 GVYYVSPDFRTVTPI--IQNI-SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP-YYFT--G--H-E  233 (333)
T ss_dssp             EEEEECTTSCCEEEE--EEEE-SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE-EECC--S--S-S
T ss_pred             eEEEEeCCCCEEEEe--ecCC-CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEE-EecC--C--C-C
Confidence            566666654332111  0011 123556777776645444 334555444332111 1100000000 0000  0  0 1


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCc------ceEEEEECCCCCEEEEEEccccccCCCCCCCC
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT------GITSLCFSYDGNVLAIACSYNYELETPPDPIP  310 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~------~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~  310 (327)
                      .+..++++++|.++++...++.|.+||. +++.+..+.....      .+.+++|+|||+.|.+++..+.   .    -.
T Consensus       234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~---~----~~  305 (333)
T 2dg1_A          234 GPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIE---M----GG  305 (333)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGG---G----TC
T ss_pred             CCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccC---C----CC
Confidence            3567999999998888878899999997 4565555543322      5789999999988876665443   1    13


Q ss_pred             CCcEEEEEcccccc
Q psy11885        311 PNNIFIRHVTDQET  324 (327)
Q Consensus       311 ~~~~~~~~~~~~~~  324 (327)
                      ...+|.+.+.-+|.
T Consensus       306 ~~~l~~~~~~~~g~  319 (333)
T 2dg1_A          306 GSMLYTVNGFAKGH  319 (333)
T ss_dssp             CEEEEEEECSSCBC
T ss_pred             CceEEEEecccCce
Confidence            45677776654443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=1.8e-13  Score=116.71  Aligned_cols=236  Identities=10%  Similarity=0.094  Sum_probs=153.8

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec------CCCceeeEEE-eCCceEEEEe-c-CCcEEEEEcC
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA------HSDPVLDCCF-QDAVHSFSGG-L-DCTLKMFDFN   86 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------h~~~v~~~~~-~~~~~~~sgs-~-Dg~i~vwd~~   86 (327)
                      ..+.+++++++ +.++++...++.|++||...........      +...+..+++ .....++.+. . ++.|++||.+
T Consensus        30 ~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~  108 (286)
T 1q7f_A           30 TEPSGVAVNAQ-NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  108 (286)
T ss_dssp             SCEEEEEECTT-CCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CCCceEEECCC-CCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC
Confidence            57899999996 4677777788999999987443332211      2245778888 3444555444 3 8899999954


Q ss_pred             CCceeeee-cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC---CCc--EEEEecCCCeEEEEeCCCeE
Q psy11885         87 TQTETVIG-THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ---PDK--VFTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        87 ~~~~~~~~-~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~d~~v  160 (327)
                      ......+. .+...+..++++++++.+++...++.|.+||.. ++.+..+..   ...  .++++++++.+++...++.|
T Consensus       109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i  187 (286)
T 1q7f_A          109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  187 (286)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEE
Confidence            43333332 234568999999999988887788999999964 555555432   122  34455556656666678899


Q ss_pred             EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885        161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA  240 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  240 (327)
                      ++||.... .+            ..                       +.....   .                 ..+..
T Consensus       188 ~~~~~~g~-~~------------~~-----------------------~~~~g~---~-----------------~~p~~  211 (286)
T 1q7f_A          188 KVFNYEGQ-YL------------RQ-----------------------IGGEGI---T-----------------NYPIG  211 (286)
T ss_dssp             EEEETTCC-EE------------EE-----------------------ESCTTT---S-----------------CSEEE
T ss_pred             EEEcCCCC-EE------------EE-----------------------EccCCc---c-----------------CCCcE
Confidence            99986421 00            00                       000000   0                 02457


Q ss_pred             EEEecCCCeEEEecCCC-eEEEEeCCCceeeeecCcCC--cceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEE
Q psy11885        241 ISFHQEYNTFATGGSDG-YVNIWDGFNKKRLCQFHRYD--TGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIR  317 (327)
Q Consensus       241 v~~spd~~~lasgs~dg-~i~iWd~~~~~~~~~~~~~~--~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~  317 (327)
                      ++++|+|+++++...++ .|++||. +++.+..+..+.  ..+.+++|+|+|+++++ +             .+++|+++
T Consensus       212 i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~-------------~~~~v~v~  276 (286)
T 1q7f_A          212 VGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-S-------------KDYRLYIY  276 (286)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-E-------------TTTEEEEE
T ss_pred             EEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-C-------------CCCeEEEE
Confidence            89999999999888886 9999995 456665554332  23689999999987776 4             23566666


Q ss_pred             Ecccccc
Q psy11885        318 HVTDQET  324 (327)
Q Consensus       318 ~~~~~~~  324 (327)
                      -+....+
T Consensus       277 ~~~~~~p  283 (286)
T 1q7f_A          277 RYVQLAP  283 (286)
T ss_dssp             ECSCCCC
T ss_pred             Ecccccc
Confidence            6655444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.66  E-value=5.7e-14  Score=124.31  Aligned_cols=255  Identities=13%  Similarity=0.046  Sum_probs=153.9

Q ss_pred             CCCcEEEEECCCCeEEEEec-CCCceeeEEEe-CCceEEEEe----------cCCcEEEEEcCCCcee-eeec------C
Q psy11885         36 WDCNVSLYDITNNNLRLKYA-HSDPVLDCCFQ-DAVHSFSGG----------LDCTLKMFDFNTQTET-VIGT------H   96 (327)
Q Consensus        36 ~d~~i~iwd~~~~~~~~~~~-h~~~v~~~~~~-~~~~~~sgs----------~Dg~i~vwd~~~~~~~-~~~~------h   96 (327)
                      .|+.|.+||..++++..... +..+  .++|+ ++.++++++          .+++|.+||..+.+.. .+..      +
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            37899999999888654433 3333  78885 788888776          3678999999876542 2221      2


Q ss_pred             CccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeee-eeCCCcE-EEEecCC-CeEEEEeCCCeEEEEECCCCccc
Q psy11885         97 DQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGN-YTQPDKV-FTMSLCG-EKFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus        97 ~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~-~~~~~~~-~~~~~~~-~~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      ......++++|||++|+++..  +++|.+||+++++.+.. +..+... ..+.+.+ ..+++.+.|+.+.+|++.....+
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~  186 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV  186 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence            234567899999999998864  68999999999988877 6554321 2234443 56788889999999988652222


Q ss_pred             e-eeec-ccce--eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeee--eccCCeeeEEEeeEEEEec
Q psy11885        172 M-QRRE-SSLK--FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR--IKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       172 ~-~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~--~~~~~~~~~~~v~~v~~sp  245 (327)
                      . .... ....  .....+...+++..++..+.++.+.+  ++...........+....  ....+.. -.....++|+|
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v--~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~g~~~~a~~~  263 (361)
T 2oiz_A          187 ASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYS--ADFSGDEVKVDGPWSLLNDEDKAKNWV-PGGYNLVGLHR  263 (361)
T ss_dssp             EEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEE--EECSSSSCEEEEEEESCCHHHHHTTCE-ECCSSCEEEET
T ss_pred             eeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEE--EEecCCCceecccccccCccccccccc-cCCeeEEEEec
Confidence            1 0000 0000  00011122344444444555554444  333211101000000000  0000000 00112378999


Q ss_pred             CCCeEEEecC-----------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        246 EYNTFATGGS-----------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       246 d~~~lasgs~-----------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      +++.+.++..           +++|.+||..+++.+..+..+.  +++++|||||++|++++.
T Consensus       264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~  324 (361)
T 2oiz_A          264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG  324 (361)
T ss_dssp             TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS
T ss_pred             CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC
Confidence            9888776532           3589999999999998887665  799999999999987763

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.65  E-value=1.5e-13  Score=121.68  Aligned_cols=255  Identities=11%  Similarity=0.006  Sum_probs=158.9

Q ss_pred             EEEEecCCCcEEEEEE----------CCCcEEEEECCCCeEEEEec-------CCCceeeEEEe-CCceEEEEec--CCc
Q psy11885         20 AVKFAPNSNQFLLASS----------WDCNVSLYDITNNNLRLKYA-------HSDPVLDCCFQ-DAVHSFSGGL--DCT   79 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~-------h~~~v~~~~~~-~~~~~~sgs~--Dg~   79 (327)
                      .++|+|+ +++|+++.          .+++|.+||..+.+......       +......++++ ++.+++++..  +++
T Consensus        54 ~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~  132 (361)
T 2oiz_A           54 HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS  132 (361)
T ss_dssp             EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE
T ss_pred             ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCe
Confidence            8999996 46666665          36789999998877543322       12345677885 7888887764  689


Q ss_pred             EEEEEcCCCceeee-ecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCC-Cceeee------eeCCC-c-EEEEecCC
Q psy11885         80 LKMFDFNTQTETVI-GTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRS-SRCVGN------YTQPD-K-VFTMSLCG  148 (327)
Q Consensus        80 i~vwd~~~~~~~~~-~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~-~~~~~~------~~~~~-~-~~~~~~~~  148 (327)
                      |.+||+.+++.... -.+... ..+.+.|++ ..+++.+.||++..|++.. ++....      +.... . .....+.+
T Consensus       133 v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  211 (361)
T 2oiz_A          133 IGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK  211 (361)
T ss_dssp             EEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred             EEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC
Confidence            99999998754322 222222 224556765 6788889999999999865 554311      11111 1 11123446


Q ss_pred             CeEEEEeCCCeEEEEECCCCccceeee-c--c----cc---eeeeEEeEEeeCCCceEEEee-c--------CeEEEEEc
Q psy11885        149 EKFVVGTAGRKVCIWDLRNMGYIMQRR-E--S----SL---KFQTRCIKCFPNKQGYVLSSI-E--------GRAAVEYL  209 (327)
Q Consensus       149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~-~--~----~~---~~~~~~~~~~~~~~~~~~~~~-~--------~~~~i~~~  209 (327)
                      ..++..+.++.|.++|+.......... .  .    ..   +.....++++++++.+.++.. +        ....++.+
T Consensus       212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi  291 (361)
T 2oiz_A          212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM  291 (361)
T ss_dssp             SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred             CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence            677777888999999987543211000 0  0    00   011112567777665555432 1        12345555


Q ss_pred             cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCc--eeeeecCcCCcceEEEEECC
Q psy11885        210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK--KRLCQFHRYDTGITSLCFSY  287 (327)
Q Consensus       210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~--~~~~~~~~~~~~v~~l~fsp  287 (327)
                      |....  +....+..+        .   +.+++|+|||++|+++.. ++|.+||..++  +.+..+......-+.++|+|
T Consensus       292 D~~t~--~~v~~i~~~--------~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          292 DTKTK--QRVARIPGR--------D---ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             ETTTT--EEEEEEECT--------T---CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred             ECCCC--cEEEEEecC--------C---eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence            54332  111111111        1   578999999999998887 99999999999  88888755555668899999


Q ss_pred             CCC
Q psy11885        288 DGN  290 (327)
Q Consensus       288 dg~  290 (327)
                      ||+
T Consensus       358 ~G~  360 (361)
T 2oiz_A          358 VGG  360 (361)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            996

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=1.1e-13  Score=132.10  Aligned_cols=271  Identities=8%  Similarity=-0.121  Sum_probs=165.7

Q ss_pred             CCCCeeEEEEecCCCcEEEEE--ECCCcEEEEEC-CCCeEEEEecCCCcee---------eEEEe---CCce-EEEEec-
Q psy11885         14 PEDGITAVKFAPNSNQFLLAS--SWDCNVSLYDI-TNNNLRLKYAHSDPVL---------DCCFQ---DAVH-SFSGGL-   76 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~--~~d~~i~iwd~-~~~~~~~~~~h~~~v~---------~~~~~---~~~~-~~sgs~-   76 (327)
                      |...|..++|+++ ..+++..  +.++...||.. .+++......|...+.         ...|+   ++.. ++.++. 
T Consensus        22 ~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~  100 (662)
T 3azo_A           22 RSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG  100 (662)
T ss_dssp             TCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred             cCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence            4568999999984 4455555  45788999985 3455555555655555         45453   5777 665443 


Q ss_pred             CCcEEEEEcC--C-Cceeeeec-----CCccEEEEEEeCCCCEEEEEECC----------CeEEEEeCCC------Ccee
Q psy11885         77 DCTLKMFDFN--T-QTETVIGT-----HDQPIRAVEYSDEVNCILTGSWD----------TSVKMWDPRS------SRCV  132 (327)
Q Consensus        77 Dg~i~vwd~~--~-~~~~~~~~-----h~~~V~~l~~~~~~~~l~sgs~d----------~~i~lwdl~~------~~~~  132 (327)
                      +..|.+|++.  + +....+..     |...+..++|+|||+.|+.++.|          ..|.+||+.+      ++..
T Consensus       101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  180 (662)
T 3azo_A          101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR  180 (662)
T ss_dssp             TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred             CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee
Confidence            5667777766  3 44444444     66778999999999999998877          5899999987      5543


Q ss_pred             eee-eCCCc--EEEEecCCCeEEEEeCC--------CeEEEEECC-CCc--cceeeecccceeeeEEeEEeeCCCceEEE
Q psy11885        133 GNY-TQPDK--VFTMSLCGEKFVVGTAG--------RKVCIWDLR-NMG--YIMQRRESSLKFQTRCIKCFPNKQGYVLS  198 (327)
Q Consensus       133 ~~~-~~~~~--~~~~~~~~~~~~~~~~d--------~~v~iwD~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (327)
                      ... .....  ...++++|+.++.++.+        ..|.+||+. ++.  ....... ..........++|+++.++++
T Consensus       181 ~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~-~~~~~~~~~~~spdg~l~~~~  259 (662)
T 3azo_A          181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG-GPEEAIAQAEWAPDGSLIVAT  259 (662)
T ss_dssp             ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE-ETTBCEEEEEECTTSCEEEEE
T ss_pred             EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC-CCCceEcceEECCCCeEEEEE
Confidence            332 22222  24678889999887754        379999998 341  1111111 111223556788888855555


Q ss_pred             eecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE-EeeEEEEecCCCeEEEecCCCeEEEE--eCCCceeeeecCc
Q psy11885        199 SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY-PVNAISFHQEYNTFATGGSDGYVNIW--DGFNKKRLCQFHR  275 (327)
Q Consensus       199 ~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~-~v~~v~~spd~~~lasgs~dg~i~iW--d~~~~~~~~~~~~  275 (327)
                      ..++...++.++.....  .......+. . .....+. .+.+++|+|+++++++++. +.++||  |..+++ +..+..
T Consensus       260 ~~~~~~~l~~~~~~~~~--~~~l~~~~~-~-~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~  333 (662)
T 3azo_A          260 DRTGWWNLHRVDPATGA--ATQLCRREE-E-FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAG  333 (662)
T ss_dssp             CTTSSCEEEEECTTTCC--EEESSCCSS-B-SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCS
T ss_pred             CCCCCeEEEEEECCCCc--eeecccccc-c-ccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecC
Confidence            55565567777642211  111001110 0 0000000 0457899999999999999 999999  555554 566666


Q ss_pred             CCcceEEEEECCCCCEEE
Q psy11885        276 YDTGITSLCFSYDGNVLA  293 (327)
Q Consensus       276 ~~~~v~~l~fspdg~~la  293 (327)
                      +...+..+. +++++.++
T Consensus       334 ~~~~~~~~~-s~~~~~~~  350 (662)
T 3azo_A          334 PWTEWAATL-TVSGTRAV  350 (662)
T ss_dssp             SCCEEEEEE-EEETTEEE
T ss_pred             CCCeEEEEE-ecCCCEEE
Confidence            666676661 44454444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.63  E-value=6e-13  Score=116.48  Aligned_cols=251  Identities=11%  Similarity=0.039  Sum_probs=153.6

Q ss_pred             CCeeEEEEecCCCcEEEEE--------ECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC---Cc--EE
Q psy11885         16 DGITAVKFAPNSNQFLLAS--------SWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD---CT--LK   81 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~--------~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D---g~--i~   81 (327)
                      ..+...+|  ++..++.+.        +.++.|.+||+.+++....    ..+...+|+ ++.+++..+.+   +.  |.
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            45677888  454433332        2367899999998875544    456778895 77888876654   33  77


Q ss_pred             EEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECC---------------------------CeEEEEeCCCCceeee
Q psy11885         82 MFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWD---------------------------TSVKMWDPRSSRCVGN  134 (327)
Q Consensus        82 vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d---------------------------~~i~lwdl~~~~~~~~  134 (327)
                      +||+.++....+..+.. +..+.|+|||+.|+.++.+                           ..|.+||+.+++.+..
T Consensus        89 ~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~  167 (347)
T 2gop_A           89 VADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE  167 (347)
T ss_dssp             EEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE
T ss_pred             EEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee
Confidence            78888776554444444 8999999999998887642                           5789999988876333


Q ss_pred             eeC-CCcEEEEecCCCeEEEEeCCC-------eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecC----
Q psy11885        135 YTQ-PDKVFTMSLCGEKFVVGTAGR-------KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG----  202 (327)
Q Consensus       135 ~~~-~~~~~~~~~~~~~~~~~~~d~-------~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  202 (327)
                      +.. ......+++++ .++++..+.       ..+||.+.+.+ .......   ....  ..+|+++.++..+...    
T Consensus       168 l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~---~~~~--~~spdg~~l~~~~~~~~~~~  240 (347)
T 2gop_A          168 FEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK---VSFY--AVDSDGERILLYGKPEKKYM  240 (347)
T ss_dssp             EEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE---ESEE--EEEECSSCEEEEECCSSSCC
T ss_pred             ecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC---ccee--eECCCCCEEEEEEccccCCc
Confidence            322 33345677777 655554432       33444433322 1111111   1111  2367777776665432    


Q ss_pred             --eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE-EEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcc
Q psy11885        203 --RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA-ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG  279 (327)
Q Consensus       203 --~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~-v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~  279 (327)
                        ...++.++ ......+   ...+         ...+.. +.|+ |+ ++++++.++.++|| +.+++.. .+..+...
T Consensus       241 ~~~~~l~~~d-~~~~~~l---~~~~---------~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~  303 (347)
T 2gop_A          241 SEHNKLYIYD-GKEVMGI---LDEV---------DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHW  303 (347)
T ss_dssp             CSSCEEEEEC-SSCEEES---STTC---------CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSE
T ss_pred             cccceEEEEC-CCceEec---cccC---------CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCe
Confidence              34566666 2211111   0111         113554 8899 88 88999999999999 8765543 33334667


Q ss_pred             eEEEEECCCCCEEEEEEccc
Q psy11885        280 ITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       280 v~~l~fspdg~~la~~~~~~  299 (327)
                      |.+++|+|  +++++++++.
T Consensus       304 v~~~~~s~--~~~~~~~~~~  321 (347)
T 2gop_A          304 IMGFDVDE--IVVYLKETAT  321 (347)
T ss_dssp             EEEEEESS--SEEEEEECSS
T ss_pred             EEeeeeeC--cEEEEEcCCC
Confidence            89999999  6666666543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.61  E-value=5.9e-13  Score=114.15  Aligned_cols=232  Identities=11%  Similarity=0.025  Sum_probs=153.7

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceee
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETV   92 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~   92 (327)
                      +..-..+++|+|+++.+++++..++.|..||..++ ......+...+.++++. ++..+++...++.|.+||..++....
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~  104 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES  104 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence            34567799999975447888888999999999888 54444566678889985 56655566567899999987665443


Q ss_pred             ee-cC----CccEEEEEEeCCCCEEEEE----E-------------CCCeEEEEeCCCCceeeeeeCCC--cEEEEecCC
Q psy11885         93 IG-TH----DQPIRAVEYSDEVNCILTG----S-------------WDTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCG  148 (327)
Q Consensus        93 ~~-~h----~~~V~~l~~~~~~~~l~sg----s-------------~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~  148 (327)
                      +. ..    ...+..++++++|+.+++.    +             ..+.|..+|.. ++.........  ..+++++++
T Consensus       105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg  183 (296)
T 3e5z_A          105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSG  183 (296)
T ss_dssp             EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTS
T ss_pred             EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCC
Confidence            32 11    2245679999999988873    3             13467777765 44322222222  235667778


Q ss_pred             CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeec
Q psy11885        149 EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK  228 (327)
Q Consensus       149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~  228 (327)
                      +.+++.+.++.|.+||+.....+.       ..  .                    .+  +....               
T Consensus       184 ~~lv~~~~~~~i~~~~~~~~g~~~-------~~--~--------------------~~--~~~~~---------------  217 (296)
T 3e5z_A          184 NLLVSDTGDNATHRYCLNARGETE-------YQ--G--------------------VH--FTVEP---------------  217 (296)
T ss_dssp             CEEEEETTTTEEEEEEECSSSCEE-------EE--E--------------------EE--ECCSS---------------
T ss_pred             CEEEEeCCCCeEEEEEECCCCcCc-------CC--C--------------------eE--eeCCC---------------
Confidence            888666778899999976211000       00  0                    00  00000               


Q ss_pred             cCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEE-CCCCCEEEEEEccccccCC
Q psy11885        229 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF-SYDGNVLAIACSYNYELET  304 (327)
Q Consensus       229 ~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f-spdg~~la~~~~~~~~~~~  304 (327)
                             ..+..++++++|+++++.  ++.|.+||.. ++.+..+..+.. +.+++| +||++.|.+++...+....
T Consensus       218 -------~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~  283 (296)
T 3e5z_A          218 -------GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE  283 (296)
T ss_dssp             -------SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred             -------CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence                   013468999999877776  7899999975 677777766655 899999 6999999988765554444

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=1.6e-12  Score=125.14  Aligned_cols=227  Identities=8%  Similarity=-0.017  Sum_probs=149.4

Q ss_pred             CCeeEEEEecCCCcEEEEEEC-CC----cEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCc----------
Q psy11885         16 DGITAVKFAPNSNQFLLASSW-DC----NVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCT----------   79 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~-d~----~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~----------   79 (327)
                      ..+..++|||++ ++||.++. +|    .|++||+.+++..........+..++|+ ++..++.++.++.          
T Consensus       125 ~~~~~~~~SPDg-~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~  203 (710)
T 2xdw_A          125 VALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (710)
T ss_dssp             EEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             EEEEEEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccc
Confidence            358899999965 56665543 33    8999999999864432222235678896 7888988887766          


Q ss_pred             ------EEEEEcCCCce---eeeec--CCccEEEEEEeCCCCEEEEEEC-----CCeEEEEeCCC------Cc-eeeeee
Q psy11885         80 ------LKMFDFNTQTE---TVIGT--HDQPIRAVEYSDEVNCILTGSW-----DTSVKMWDPRS------SR-CVGNYT  136 (327)
Q Consensus        80 ------i~vwd~~~~~~---~~~~~--h~~~V~~l~~~~~~~~l~sgs~-----d~~i~lwdl~~------~~-~~~~~~  136 (327)
                            |++|++.++..   .+...  |...+..+.|+|||++|+.++.     +..|.+||+.+      ++ ....+.
T Consensus       204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~  283 (710)
T 2xdw_A          204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI  283 (710)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred             cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence                  99999987652   22222  4556789999999999887765     67899999976      42 233333


Q ss_pred             CC--CcEEEEecCCCeEEEEeCC----CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEcc
Q psy11885        137 QP--DKVFTMSLCGEKFVVGTAG----RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLD  210 (327)
Q Consensus       137 ~~--~~~~~~~~~~~~~~~~~~d----~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  210 (327)
                      .+  .....++++|+.++..+..    ..|.+||+.+.+..      ..    ..  ..+.                   
T Consensus       284 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------~~----~~--l~~~-------------------  332 (710)
T 2xdw_A          284 DNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES------KW----KV--LVPE-------------------  332 (710)
T ss_dssp             CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG------GC----EE--EECC-------------------
T ss_pred             CCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------cc----ee--ccCC-------------------
Confidence            22  2234466778887766543    35888887653210      00    00  0000                   


Q ss_pred             CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCe--EEEEeCCCceeeeecCcCCcceEEEEECCC
Q psy11885        211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY--VNIWDGFNKKRLCQFHRYDTGITSLCFSYD  288 (327)
Q Consensus       211 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~--i~iWd~~~~~~~~~~~~~~~~v~~l~fspd  288 (327)
                       ...                     ..+..++|++++.+++++..|+.  |++|++.+++.+..+..+...+..++++|+
T Consensus       333 -~~~---------------------~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d  390 (710)
T 2xdw_A          333 -HEK---------------------DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKK  390 (710)
T ss_dssp             -CSS---------------------CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTT
T ss_pred             -CCC---------------------CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCC
Confidence             000                     02456778888888888888885  566777677766667666667889999999


Q ss_pred             CCEEEEEE
Q psy11885        289 GNVLAIAC  296 (327)
Q Consensus       289 g~~la~~~  296 (327)
                      ++.|+.+.
T Consensus       391 ~~~l~~~~  398 (710)
T 2xdw_A          391 DTEIFYQF  398 (710)
T ss_dssp             CSEEEEEE
T ss_pred             CCEEEEEE
Confidence            98777553

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.59  E-value=8.1e-13  Score=115.28  Aligned_cols=245  Identities=13%  Similarity=0.099  Sum_probs=149.4

Q ss_pred             CCCcEEEEECCCCeEEEEe-------cCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCcee-eeecCCccEEEEEEeC
Q psy11885         36 WDCNVSLYDITNNNLRLKY-------AHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSD  107 (327)
Q Consensus        36 ~d~~i~iwd~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~  107 (327)
                      .+++|.++|.++++.....       ........+++.++...++...++.|.+||..+.+.. .+. .......+++++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~   93 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS   93 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence            3789999999999865422       1123345667765555556666899999999987753 343 345678899988


Q ss_pred             CCCEEEEEECCCeEEEEeCCCCceeeeeeCCC------cEEEEecCCCeEEEEe--CCCeEEEEECCCCccceeeecccc
Q psy11885        108 EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD------KVFTMSLCGEKFVVGT--AGRKVCIWDLRNMGYIMQRRESSL  179 (327)
Q Consensus       108 ~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~d~~v~iwD~~~~~~~~~~~~~~~  179 (327)
                      +++..++...++.|.+||+++++....+....      ....+...+..++++.  .++.|.++|+++.+........  
T Consensus        94 ~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--  171 (328)
T 3dsm_A           94 DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--  171 (328)
T ss_dssp             TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--
Confidence            88444444489999999999998877665332      2222222566666665  4889999999887643222211  


Q ss_pred             eeeeEEeEEeeCCCceEEEeecC--------eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE
Q psy11885        180 KFQTRCIKCFPNKQGYVLSSIEG--------RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA  251 (327)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la  251 (327)
                       ..+..+.+.+++..+++...+.        ...+..++....  ++...+.   .. .+    ...+.++|+|+++.|.
T Consensus       172 -~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~--~v~~~~~---~~-~g----~~p~~la~~~d~~~ly  240 (328)
T 3dsm_A          172 -IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF--TVEKQFK---FK-LG----DWPSEVQLNGTRDTLY  240 (328)
T ss_dssp             -SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT--EEEEEEE---CC-TT----CCCEEEEECTTSCEEE
T ss_pred             -CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC--eEEEEEe---cC-CC----CCceeEEEecCCCEEE
Confidence             1234556666655433333220        133444543321  1111111   00 00    1257899999999988


Q ss_pred             EecCCCeEEEEeCCCceeeee--cCcCCcceEEEEECCCCCEEEEEE
Q psy11885        252 TGGSDGYVNIWDGFNKKRLCQ--FHRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       252 sgs~dg~i~iWd~~~~~~~~~--~~~~~~~v~~l~fspdg~~la~~~  296 (327)
                      ++..  .|.+||..+++....  +.........++++|++..|.++.
T Consensus       241 v~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          241 WINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             EESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             EEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            7754  899999988765321  121134578999999544444444

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.55  E-value=1.8e-11  Score=105.46  Aligned_cols=230  Identities=10%  Similarity=0.091  Sum_probs=145.4

Q ss_pred             CCCeeEEEEecCCCcEEEE-------EECCCcEEEEECCCCeEEEEec-----CCCceeeEEEeCC-ceEEEEecCCcEE
Q psy11885         15 EDGITAVKFAPNSNQFLLA-------SSWDCNVSLYDITNNNLRLKYA-----HSDPVLDCCFQDA-VHSFSGGLDCTLK   81 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~-----h~~~v~~~~~~~~-~~~~sgs~Dg~i~   81 (327)
                      -....+++|+++ +.++++       +..++.|.+||..+++......     +...+..+++... ..++.++....|.
T Consensus        17 ~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence            346789999985 466666       5678999999988887544332     3456778888543 5555555555799


Q ss_pred             EEEcCCCceeee-ec-----CCccEEEEEEeCCCCEEEEEECC---------------CeEEEEeCCCCceeeeeeC--C
Q psy11885         82 MFDFNTQTETVI-GT-----HDQPIRAVEYSDEVNCILTGSWD---------------TSVKMWDPRSSRCVGNYTQ--P  138 (327)
Q Consensus        82 vwd~~~~~~~~~-~~-----h~~~V~~l~~~~~~~~l~sgs~d---------------~~i~lwdl~~~~~~~~~~~--~  138 (327)
                      +||.+ +....+ ..     ....+.+++++++|+..++...+               +.|..||.. ++.......  .
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~  173 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF  173 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC
Confidence            99987 554333 21     12357899999999877776554               578888875 544322221  1


Q ss_pred             CcEEEEe----cCCCeEEEE-eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCc
Q psy11885        139 DKVFTMS----LCGEKFVVG-TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP  213 (327)
Q Consensus       139 ~~~~~~~----~~~~~~~~~-~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  213 (327)
                      ...+.++    ++++.++++ ..++.|.+||++....        +.. ...           ..         .+..  
T Consensus       174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~--------~~~-~~~-----------~~---------~~~~--  222 (314)
T 1pjx_A          174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK--------IEN-KKV-----------WG---------HIPG--  222 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE--------EEE-EEE-----------EE---------ECCC--
T ss_pred             cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc--------ccc-ceE-----------EE---------ECCC--
Confidence            2234555    556555554 4577888888641100        000 000           00         0000  


Q ss_pred             ccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEE
Q psy11885        214 EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA  293 (327)
Q Consensus       214 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la  293 (327)
                                 +.        ...+..++++++|.++++...++.|.+||..+++.+..+..+...+.+++|+|||+.|.
T Consensus       223 -----------~~--------~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~  283 (314)
T 1pjx_A          223 -----------TH--------EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             -----------CS--------SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred             -----------CC--------CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEE
Confidence                       00        00245689999999888887889999999876766655555556789999999999776


Q ss_pred             EEEc
Q psy11885        294 IACS  297 (327)
Q Consensus       294 ~~~~  297 (327)
                      +++.
T Consensus       284 v~~~  287 (314)
T 1pjx_A          284 VTEH  287 (314)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            6654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.54  E-value=1.8e-12  Score=125.36  Aligned_cols=265  Identities=11%  Similarity=0.037  Sum_probs=157.4

Q ss_pred             eEEEEecCCCcEEEEEECC---------CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885         19 TAVKFAPNSNQFLLASSWD---------CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      ..++|||+ +++|+.++.+         +.+.+||+.++++.....|...+...+|+ ++..++.++ |+.|.+|++.++
T Consensus        65 ~~~~~Spd-g~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~  142 (740)
T 4a5s_A           65 NDYSISPD-GQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL  142 (740)
T ss_dssp             CEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred             cceEECCC-CCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence            45899996 5777877765         56679999999977666677788999995 788888774 889999999877


Q ss_pred             ceeeee--cCCccE-----------------EEEEEeCCCCEEEEEECCC------------------------------
Q psy11885         89 TETVIG--THDQPI-----------------RAVEYSDEVNCILTGSWDT------------------------------  119 (327)
Q Consensus        89 ~~~~~~--~h~~~V-----------------~~l~~~~~~~~l~sgs~d~------------------------------  119 (327)
                      ....+.  ++...+                 ..+.|||||+.|+.++.|.                              
T Consensus       143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred             ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence            654332  222222                 3589999999999876432                              


Q ss_pred             ------eEEEEeCCC---Cce--eeeeeC------CCc---EEEEecCCCeEEEEeC----CCeEEEEECCCCc----c-
Q psy11885        120 ------SVKMWDPRS---SRC--VGNYTQ------PDK---VFTMSLCGEKFVVGTA----GRKVCIWDLRNMG----Y-  170 (327)
Q Consensus       120 ------~i~lwdl~~---~~~--~~~~~~------~~~---~~~~~~~~~~~~~~~~----d~~v~iwD~~~~~----~-  170 (327)
                            +|++||+.+   +++  ...+..      ...   ...++++++.++....    +..|.+||+.+++    . 
T Consensus       223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~  302 (740)
T 4a5s_A          223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL  302 (740)
T ss_dssp             SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred             CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence                  588899988   732  222322      111   2356777875555432    2379999998765    1 


Q ss_pred             -ceee--ecccceee---eEEeEEeeCCCceE-EEe-ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        171 -IMQR--RESSLKFQ---TRCIKCFPNKQGYV-LSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       171 -~~~~--~~~~~~~~---~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                       +...  .....-..   .....++|+++.++ ..+ .+|...|+.++.......   .+.     ...    +.+..+.
T Consensus       303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~---~lT-----~g~----~~v~~~~  370 (740)
T 4a5s_A          303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT---FIT-----KGT----WEVIGIE  370 (740)
T ss_dssp             GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE---ESC-----CSS----SCEEEEE
T ss_pred             EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE---ecc-----cCC----EEEEEEE
Confidence             1110  00110000   12456788887765 443 456667777664432111   111     000    1122222


Q ss_pred             EecCCCeE-EEecC----CC--eEEEEeCCCceeeeecC----cCCcceEEEEECCCCCEEEEEEcc
Q psy11885        243 FHQEYNTF-ATGGS----DG--YVNIWDGFNKKRLCQFH----RYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       243 ~spd~~~l-asgs~----dg--~i~iWd~~~~~~~~~~~----~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                       .+|++.| ++++.    .+  .|+..++..++....+.    .........+|||||++++..++.
T Consensus       371 -~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~  436 (740)
T 4a5s_A          371 -ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSG  436 (740)
T ss_dssp             -EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECS
T ss_pred             -EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCC
Confidence             2445554 45544    23  34444554443322332    123467899999999999888654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.54  E-value=1.2e-11  Score=115.39  Aligned_cols=260  Identities=15%  Similarity=0.089  Sum_probs=159.9

Q ss_pred             CCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcC--CCcee-eeecCCccEEE
Q psy11885         27 SNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN--TQTET-VIGTHDQPIRA  102 (327)
Q Consensus        27 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~--~~~~~-~~~~h~~~V~~  102 (327)
                      ++.++++...++.|.++|..++++.........+..++|+ ++.++++++.|+.|.+||+.  +.+.. .+.. ......
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~  244 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARS  244 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCce
Confidence            3456677778899999999999876665555567788885 78899999999999999995  44332 2332 233578


Q ss_pred             EEEe----CCCCEEEEEEC-CCeEEEEeCCCCceeeeeeCCC----------------------------------c---
Q psy11885        103 VEYS----DEVNCILTGSW-DTSVKMWDPRSSRCVGNYTQPD----------------------------------K---  140 (327)
Q Consensus       103 l~~~----~~~~~l~sgs~-d~~i~lwdl~~~~~~~~~~~~~----------------------------------~---  140 (327)
                      ++|+    |||++++++.+ +++|.++|..+.+.++.+....                                  .   
T Consensus       245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~  324 (567)
T 1qks_A          245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  324 (567)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence            9999    69998887655 5999999998887765543110                                  0   


Q ss_pred             ---------------------EEEEecCCCeEEEEe-CCCeEEEEECCCCccceeeec-ccceeeeEEeEE-eeCCCceE
Q psy11885        141 ---------------------VFTMSLCGEKFVVGT-AGRKVCIWDLRNMGYIMQRRE-SSLKFQTRCIKC-FPNKQGYV  196 (327)
Q Consensus       141 ---------------------~~~~~~~~~~~~~~~-~d~~v~iwD~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~  196 (327)
                                           ...+++++.+++++. .+++|.++|+++++....... ...+.+.+...+ .|+...+.
T Consensus       325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~  404 (567)
T 1qks_A          325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW  404 (567)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred             EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEE
Confidence                                 113455566666554 678999999998765433322 222221122223 44433333


Q ss_pred             -EEee-cCeEEEEEccCCccc---ccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC-------CCeEEEEeC
Q psy11885        197 -LSSI-EGRAAVEYLDTGPEM---QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-------DGYVNIWDG  264 (327)
Q Consensus       197 -~~~~-~~~~~i~~~~~~~~~---~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~-------dg~i~iWd~  264 (327)
                       ++.. ++.+.+...+.....   .++...+..     .+.    .-..+..||++++|.+...       .++|.++|+
T Consensus       405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~-----~g~----g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~  475 (567)
T 1qks_A          405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA-----LGG----GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI  475 (567)
T ss_dssp             EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-----SCS----CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred             EeCCCCCCeEEEecCCCCCCccccCEEEEEEec-----CCC----CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence             3332 355555444431110   011111111     000    0123778999998887552       359999998


Q ss_pred             CCc-----eee-eecC--------cCCcceEEEEECCCCCEEEEEE
Q psy11885        265 FNK-----KRL-CQFH--------RYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       265 ~~~-----~~~-~~~~--------~~~~~v~~l~fspdg~~la~~~  296 (327)
                      .+.     ... ..+.        .....+..+.|+|||+++..+.
T Consensus       476 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~  521 (567)
T 1qks_A          476 KAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSV  521 (567)
T ss_dssp             GGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEE
T ss_pred             CcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEe
Confidence            876     111 1221        1234689999999999988774

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=2.3e-11  Score=106.03  Aligned_cols=249  Identities=9%  Similarity=0.025  Sum_probs=153.7

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEE-eCCceEEEEe-cCCcEEEEEcCCCcee-e
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFSGG-LDCTLKMFDFNTQTET-V   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~-~~~~~~~sgs-~Dg~i~vwd~~~~~~~-~   92 (327)
                      .....+++..  ++++++...++.|.+||..+++.............+++ +++ .++.+. .++.|.+||..+++.. .
T Consensus        44 ~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~  120 (328)
T 3dsm_A           44 DVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGY  120 (328)
T ss_dssp             SCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred             ccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEE
Confidence            3467788864  45666666789999999999987555554566788888 555 666555 7999999999887643 2


Q ss_pred             eecCC-----ccEEEEEEeCCCCEEEEEE--CCCeEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEEEEeCC------
Q psy11885         93 IGTHD-----QPIRAVEYSDEVNCILTGS--WDTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVGTAG------  157 (327)
Q Consensus        93 ~~~h~-----~~V~~l~~~~~~~~l~sgs--~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d------  157 (327)
                      +....     .....+++  +++.++.+.  .+++|.++|+++++.+..+....  ..+.++++|+.+++...+      
T Consensus       121 i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~  198 (328)
T 3dsm_A          121 IECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPY  198 (328)
T ss_dssp             EECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred             EEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCcc
Confidence            33222     13456666  345566555  48999999999998877765432  234556666655544433      


Q ss_pred             ----CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCee
Q psy11885        158 ----RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE  233 (327)
Q Consensus       158 ----~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~  233 (327)
                          +.|.++|.++.+......... ...+..+++.|+++.+.++..  .+  +.++...........+...        
T Consensus       199 ~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v--~~~d~~t~~~~~~~~~~~~--------  265 (328)
T 3dsm_A          199 GYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DI--WRMPVEADRVPVRPFLEFR--------  265 (328)
T ss_dssp             CBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SE--EEEETTCSSCCSSCSBCCC--------
T ss_pred             ccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EE--EEEECCCCceeeeeeecCC--------
Confidence                789999998765332211110 113467778877766655543  33  3344322111000000000        


Q ss_pred             eEEEeeEEEEec-CCCeEEEe----cCCCeEEEEeCCCceeeeecCcCCcceEEEEE
Q psy11885        234 KIYPVNAISFHQ-EYNTFATG----GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF  285 (327)
Q Consensus       234 ~~~~v~~v~~sp-d~~~lasg----s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f  285 (327)
                       ......++++| ++..+++.    ..++.|.+||.. ++.+.++.....| ..++|
T Consensus       266 -~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P-~~~~~  319 (328)
T 3dsm_A          266 -DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIP-GAFCW  319 (328)
T ss_dssp             -SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESE-EEEEE
T ss_pred             -CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCc-ceEEE
Confidence             01356899999 55566666    678999999987 8877776532222 45555

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.51  E-value=3.5e-11  Score=101.32  Aligned_cols=221  Identities=8%  Similarity=-0.001  Sum_probs=139.4

Q ss_pred             CeeEEEEecCCCcEEE-EEECCCcEEEEECCCCeEEEE-ecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee
Q psy11885         17 GITAVKFAPNSNQFLL-ASSWDCNVSLYDITNNNLRLK-YAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI   93 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~-~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~   93 (327)
                      ...++++++++ .+++ +.+.++.|.+||..++..... ..+...+.++++. ++. ++.+..++.|.+||.++.....+
T Consensus        25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEEC
T ss_pred             CccceEECCCC-CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceEeee
Confidence            78899999964 5666 446788999999866553322 1233456778885 455 55444488999999877654433


Q ss_pred             e-cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeee-eC--CCcEEEEecCCCeEEEEeCCCeEEEEECCCCc
Q psy11885         94 G-THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY-TQ--PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMG  169 (327)
Q Consensus        94 ~-~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~  169 (327)
                      . .....+..++++++++.+++...++.|.+|+..+....... ..  ....+.+++++..+++...++.|.+||..+..
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence            2 22356889999999987777777899999987654432211 11  11235566667655555567788888865421


Q ss_pred             cceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe
Q psy11885        170 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT  249 (327)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~  249 (327)
                      ..                         .           ... ..   .                 ..+..++++|+|..
T Consensus       183 ~~-------------------------~-----------~~~-~~---~-----------------~~p~~i~~d~~g~l  205 (270)
T 1rwi_B          183 QV-------------------------V-----------LPF-TD---I-----------------TAPWGIAVDEAGTV  205 (270)
T ss_dssp             EE-------------------------E-----------CCC-SS---C-----------------CSEEEEEECTTCCE
T ss_pred             eE-------------------------e-----------ecc-cC---C-----------------CCceEEEECCCCCE
Confidence            00                         0           000 00   0                 02457899999988


Q ss_pred             EEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885        250 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       250 lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~  296 (327)
                      +++...++.|.+|+............+...+.+++++|+|+++++..
T Consensus       206 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  252 (270)
T 1rwi_B          206 YVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR  252 (270)
T ss_dssp             EEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred             EEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC
Confidence            88888889999999765433322222224578999999998766654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.51  E-value=3.9e-12  Score=113.00  Aligned_cols=248  Identities=11%  Similarity=0.010  Sum_probs=142.6

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-CCCceeeEEE--e-CCceEEE---------------
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HSDPVLDCCF--Q-DAVHSFS---------------   73 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~~~v~~~~~--~-~~~~~~s---------------   73 (327)
                      .+...+..++|+|+ ++.|+.++.++.|++||+.+++...... +...+....+  + ++..++.               
T Consensus        78 ~~~~~~~~~~~spd-g~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~  156 (388)
T 3pe7_A           78 GRGDNTFGGFLSPD-DDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK  156 (388)
T ss_dssp             SSCBCSSSCEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred             CCCCCccceEEcCC-CCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence            33344557789996 5788888889999999999988654443 3333433333  3 5555542               


Q ss_pred             -------EecCCcEEEEEcCCCceeeeecCCccEEEEEEeC-CCCEEEEEECC------CeEEEEeCCCCceeeeeeCCC
Q psy11885         74 -------GGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSD-EVNCILTGSWD------TSVKMWDPRSSRCVGNYTQPD  139 (327)
Q Consensus        74 -------gs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~sgs~d------~~i~lwdl~~~~~~~~~~~~~  139 (327)
                             .+.+..|.+||+.++....+..+...+..+.|+| +|+.|+....+      ..|.++|+.+++.........
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  236 (388)
T 3pe7_A          157 KFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE  236 (388)
T ss_dssp             HHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred             hhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence                   2245789999999887766666777789999999 99998877763      378888886654332222221


Q ss_pred             --cE--EEEecCCCeEEEEeC--CC---eEEEEECCCCccceeeecccceee---eEEeEEeeCCCceEEEee-------
Q psy11885        140 --KV--FTMSLCGEKFVVGTA--GR---KVCIWDLRNMGYIMQRRESSLKFQ---TRCIKCFPNKQGYVLSSI-------  200 (327)
Q Consensus       140 --~~--~~~~~~~~~~~~~~~--d~---~v~iwD~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------  200 (327)
                        .+  ..++++|+.++..+.  ++   .|.+||+.+++.............   .....++|+++.++....       
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  316 (388)
T 3pe7_A          237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI  316 (388)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------
T ss_pred             CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc
Confidence              22  357778887765443  22   499999987653211111110000   111256777776665432       


Q ss_pred             cCeEEEEEccCCcccccceeeeeeeeeccCC--eeeEEEeeEEEEecCCCeEEEec-CCCeEEEEeC
Q psy11885        201 EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDG--IEKIYPVNAISFHQEYNTFATGG-SDGYVNIWDG  264 (327)
Q Consensus       201 ~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~--~~~~~~v~~v~~spd~~~lasgs-~dg~i~iWd~  264 (327)
                      .+...++.++......   ..+..+...-..  ......+.+++|+|||+.|+..+ .+|...||.+
T Consensus       317 ~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          317 ENDPFLYVFNMKNGTQ---HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             CCCCEEEEEETTTTEE---EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             CCCCEEEEEeccCCce---EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            3344555565433211   111111110000  00000146789999999888655 4677777753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.49  E-value=3.8e-11  Score=102.04  Aligned_cols=206  Identities=9%  Similarity=0.012  Sum_probs=146.4

Q ss_pred             CcEEEEEECCCcEEEEECCCCeEEEEec-CC-CceeeEEE-eCCceEEEEecCCcEEEEEcCCCcee-eeecC-CccEEE
Q psy11885         28 NQFLLASSWDCNVSLYDITNNNLRLKYA-HS-DPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTET-VIGTH-DQPIRA  102 (327)
Q Consensus        28 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~-~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~h-~~~V~~  102 (327)
                      +++|++++.|+.|++||.++++..-.+. +. ..+.++.+ +++..++  +.++.|..||. +++.. .+..+ ...+.+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            4789999999999999999999765554 33 35677777 4666666  45788999998 45443 33333 346888


Q ss_pred             EEEeCCCCEEEEEEC-CCeEEEEeCCCCceeeeeeCC---------CcEEEEecCCCeEEEEeCCCeEEEEECCCCccce
Q psy11885        103 VEYSDEVNCILTGSW-DTSVKMWDPRSSRCVGNYTQP---------DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIM  172 (327)
Q Consensus       103 l~~~~~~~~l~sgs~-d~~i~lwdl~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~  172 (327)
                      +.+.++|+.+++.+. +++|..+|. +++.++.+...         ........+|+.+++.+.++.|..||.. ++.+ 
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~-  158 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL-  158 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE-
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE-
Confidence            999999999999887 888888885 67776665421         1123456678888888888899999876 4321 


Q ss_pred             eeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEE
Q psy11885        173 QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT  252 (327)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~las  252 (327)
                                                        |.+....                       .+.++.+.+++.++++
T Consensus       159 ----------------------------------w~~~~~~-----------------------~~~~~~~~~~g~~~v~  181 (276)
T 3no2_A          159 ----------------------------------NSVKLSG-----------------------TPFSSAFLDNGDCLVA  181 (276)
T ss_dssp             ----------------------------------EEEECSS-----------------------CCCEEEECTTSCEEEE
T ss_pred             ----------------------------------EEEECCC-----------------------CccceeEcCCCCEEEE
Confidence                                              0011000                       1223456789999999


Q ss_pred             ecCCCeEEEEeCCCceeeeecCcCC------cceEEEEECCCCCEEEEEE
Q psy11885        253 GGSDGYVNIWDGFNKKRLCQFHRYD------TGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       253 gs~dg~i~iWd~~~~~~~~~~~~~~------~~v~~l~fspdg~~la~~~  296 (327)
                      ++.++.|..+|..+|+.+.++....      ..+..++..++|.++++..
T Consensus       182 ~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          182 CGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             eCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            9888999999999899888775322      1278899999999998763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.48  E-value=3.4e-10  Score=100.34  Aligned_cols=265  Identities=9%  Similarity=-0.062  Sum_probs=154.1

Q ss_pred             EEecCCCcEEEEEEC--CC---cEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEe----------cCCcEEEEEc
Q psy11885         22 KFAPNSNQFLLASSW--DC---NVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGG----------LDCTLKMFDF   85 (327)
Q Consensus        22 ~fs~~~~~~l~s~~~--d~---~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs----------~Dg~i~vwd~   85 (327)
                      ...|++ +++.+...  .+   +|.++|..++++.....-.... .++++ ++.+++.+.          .++.|.+||.
T Consensus        27 ~~~~~~-~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADG-RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCC-CEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            344644 55555442  22   8899999998865444322223 77885 788888765          3678999999


Q ss_pred             CCCcee-eeecC-------CccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeee-eeCCCcEEEEecC-CCeEEE
Q psy11885         86 NTQTET-VIGTH-------DQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGN-YTQPDKVFTMSLC-GEKFVV  153 (327)
Q Consensus        86 ~~~~~~-~~~~h-------~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~-~~~~~~~~~~~~~-~~~~~~  153 (327)
                      .+.+.. .+...       ...-..+.++|||++|+.+..  ++.|.++| ++++.+.. +..+..+ .+.+. +..+++
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~-~~~~~~~~~~~~  182 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCY-HIHPGAPSTFYL  182 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceE-EEEeCCCceEEE
Confidence            876542 12110       122457899999999998874  58899999 99998888 7665543 33344 345677


Q ss_pred             EeCCCeEEEEECCCCccceeeec-----ccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeec
Q psy11885        154 GTAGRKVCIWDLRNMGYIMQRRE-----SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK  228 (327)
Q Consensus       154 ~~~d~~v~iwD~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~  228 (327)
                      .+.|+++.++|. +++.......     ...+.. ....+.+++..++..+..+.+.+  .+.......+...+......
T Consensus       183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~v~v--id~~~~~~~v~~~~~~~~~~  258 (373)
T 2mad_H          183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLL-TQPAQANKSGRIVWPVYSGKILQ--ADISAAGATNKAPIDALSGG  258 (373)
T ss_pred             EcCCCCEEEEEC-CCcEEEEEeccccccCCccee-ecceeEecCCEEEEEcCCceEEE--EeccCCcceEeeeeeecCCc
Confidence            788999999999 6654311110     000000 11122333344444444444433  33321111111011000000


Q ss_pred             cCCeeeEE--EeeEEEEecCCCeEEEecC----------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCC-EEEEE
Q psy11885        229 EDGIEKIY--PVNAISFHQEYNTFATGGS----------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGN-VLAIA  295 (327)
Q Consensus       229 ~~~~~~~~--~v~~v~~spd~~~lasgs~----------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~-~la~~  295 (327)
                      . ....+.  ....++++||++.+.++..          ++.|.+.|..+++.+.++... ...+.++|||||+ +|.++
T Consensus       259 ~-~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          259 R-KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             c-cccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEE
Confidence            0 000000  1223788999988777543          358999999999988887533 3468999999999 55554


Q ss_pred             E
Q psy11885        296 C  296 (327)
Q Consensus       296 ~  296 (327)
                      .
T Consensus       337 ~  337 (373)
T 2mad_H          337 S  337 (373)
T ss_pred             c
Confidence            3

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.47  E-value=5e-12  Score=112.37  Aligned_cols=240  Identities=8%  Similarity=-0.065  Sum_probs=135.8

Q ss_pred             EEECCCCeEEE-EecCCCc-----eeeEEEe-CCceEEEEec-C--CcEEEEEcCCCceeeeecCCccE-EEEEEeCCCC
Q psy11885         42 LYDITNNNLRL-KYAHSDP-----VLDCCFQ-DAVHSFSGGL-D--CTLKMFDFNTQTETVIGTHDQPI-RAVEYSDEVN  110 (327)
Q Consensus        42 iwd~~~~~~~~-~~~h~~~-----v~~~~~~-~~~~~~sgs~-D--g~i~vwd~~~~~~~~~~~h~~~V-~~l~~~~~~~  110 (327)
                      ..|..+++... ...+...     +..++|+ ++.+++.... +  ..|.+||+.++....+..+...+ ..+.|+|||+
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~   93 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER   93 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence            34666665332 2223222     5566775 7777765543 2  36788898877655444333333 3378999999


Q ss_pred             EEEEEECCCeEEEEeCCCCceeeeeeCCCcE------E----------------EEecCCCeEEEE-----eCCCeEEEE
Q psy11885        111 CILTGSWDTSVKMWDPRSSRCVGNYTQPDKV------F----------------TMSLCGEKFVVG-----TAGRKVCIW  163 (327)
Q Consensus       111 ~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~------~----------------~~~~~~~~~~~~-----~~d~~v~iw  163 (327)
                      .|+.++.++.|.+||+.+++.......+...      +                .++++++.++..     ..+..|.+|
T Consensus        94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~  173 (396)
T 3c5m_A           94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV  173 (396)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred             EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence            9999999999999999888765444422211      0                112233333322     345579999


Q ss_pred             ECCCCccceeeecccceeeeEEeEEee-CCCceEEEeecCe----EEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        164 DLRNMGYIMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGR----AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       164 D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      |+.+++..... .  .......+.++| ++..++..+.+..    ..++.++.....  ...... +.       ....+
T Consensus       174 d~~~g~~~~~~-~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~-~~-------~~~~~  240 (396)
T 3c5m_A          174 DIETGELEVIH-Q--DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKE-HA-------EGESC  240 (396)
T ss_dssp             ETTTCCEEEEE-E--ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSC-CC-------TTEEE
T ss_pred             ECCCCcEEeec-c--CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeec-cC-------CCccc
Confidence            99876532111 1  111234456677 4544444433322    344444432211  000000 00       01236


Q ss_pred             eEEEEecCCCeEEEecCC-----CeEEEEeCCCceeeeecCcCCcceEEEEECC-CCCEEEEEEc
Q psy11885        239 NAISFHQEYNTFATGGSD-----GYVNIWDGFNKKRLCQFHRYDTGITSLCFSY-DGNVLAIACS  297 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~d-----g~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp-dg~~la~~~~  297 (327)
                      ..++|+|||+.|+.++.+     +.|++||+.+++..... ... ... ++||| ||++|++++.
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~-~~~-~~~s~~dg~~l~~~~~  302 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-VMP-PCS-HLMSNFDGSLMVGDGC  302 (396)
T ss_dssp             EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-ECC-SEE-EEEECSSSSEEEEEEC
T ss_pred             cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-eCC-CCC-CCccCCCCceEEEecC
Confidence            778999999988876544     45999999877543321 111 223 89999 9999987654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.47  E-value=8.5e-12  Score=119.82  Aligned_cols=239  Identities=8%  Similarity=-0.063  Sum_probs=143.7

Q ss_pred             CCCeeEEEEecCCCcEEE-E----EECCCcEEEEECCCCeEEEEecCCCce--eeEEEe-CCceEEEEecCCc-------
Q psy11885         15 EDGITAVKFAPNSNQFLL-A----SSWDCNVSLYDITNNNLRLKYAHSDPV--LDCCFQ-DAVHSFSGGLDCT-------   79 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~-s----~~~d~~i~iwd~~~~~~~~~~~h~~~v--~~~~~~-~~~~~~sgs~Dg~-------   79 (327)
                      ...+..++|||++ ++|| +    |+.+.+|++||+.+++... ..+-..+  ..++|+ ++..++.++.|..       
T Consensus       120 ~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          120 TVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             CEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            3468899999975 5666 3    3334689999999988541 1111222  577895 7788888888776       


Q ss_pred             ------EEEEEcCCCce--ee-ee--cCCccEEEEEEeCCCCEEEEEECCC----eEEEEeCCCCceeeeeeCCC-cEEE
Q psy11885         80 ------LKMFDFNTQTE--TV-IG--THDQPIRAVEYSDEVNCILTGSWDT----SVKMWDPRSSRCVGNYTQPD-KVFT  143 (327)
Q Consensus        80 ------i~vwd~~~~~~--~~-~~--~h~~~V~~l~~~~~~~~l~sgs~d~----~i~lwdl~~~~~~~~~~~~~-~~~~  143 (327)
                            |++|++.++..  .. ..  .|...+..+.|+|||++|+.++.++    .|.+||..+++......... ....
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~  277 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEV  277 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEE
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEE
Confidence                  99999987752  22 22  3445788999999999998877666    77888776554333222222 2222


Q ss_pred             EecCCCeEEEEeC----CCeEEEEECCCCcc--ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccc
Q psy11885        144 MSLCGEKFVVGTA----GRKVCIWDLRNMGY--IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK  217 (327)
Q Consensus       144 ~~~~~~~~~~~~~----d~~v~iwD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  217 (327)
                      +.+++. ++..+.    ++.|.+||+.+.+.  ...............+.+. ++..++....++...++.++.....  
T Consensus       278 ~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~--  353 (695)
T 2bkl_A          278 HAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP--  353 (695)
T ss_dssp             EEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE--
T ss_pred             EecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe--
Confidence            335566 655553    57899999976542  1111111101112333444 3334445556677777776632110  


Q ss_pred             ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE----EecCCCeEEEEeCCCce
Q psy11885        218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA----TGGSDGYVNIWDGFNKK  268 (327)
Q Consensus       218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la----sgs~dg~i~iWd~~~~~  268 (327)
                       ...+..+   +     ...+..++++|+++.|+    +....++|++||+.+++
T Consensus       354 -~~~l~~~---~-----~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          354 -VRTVQLP---G-----VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             -EEECCCS---S-----SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             -eEEecCC---C-----CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence             0111111   0     01356788899998877    34445789999988765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.47  E-value=5e-11  Score=105.06  Aligned_cols=274  Identities=12%  Similarity=0.027  Sum_probs=162.0

Q ss_pred             eEEEEecCCCcEEEEEEC-----CCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEe----------cCCcEEE
Q psy11885         19 TAVKFAPNSNQFLLASSW-----DCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGG----------LDCTLKM   82 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs----------~Dg~i~v   82 (327)
                      ......|++. .+.+...     ++.|.+.|..+++......-..... ++++ ++.+++.++          .++.|.+
T Consensus        36 ~~~~~~pd~~-~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           36 ILEAPAPDAR-RVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             BCCCCCCCTT-EEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             eeeccCCCCC-EEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence            3456678654 4444443     6899999999998655443222223 7885 788887665          3678999


Q ss_pred             EEcCCCcee-eeecC-------CccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEE
Q psy11885         83 FDFNTQTET-VIGTH-------DQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFV  152 (327)
Q Consensus        83 wd~~~~~~~-~~~~h-------~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (327)
                      ||..+.+.. .+...       ...-..+.++|||++++.+..  ++.|.++|+++++.+.++..+............++
T Consensus       114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~  193 (386)
T 3sjl_D          114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF  193 (386)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred             EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeE
Confidence            999887643 22211       113456899999999998864  68999999999999998877654322333355677


Q ss_pred             EEeCCCeEEEEECCCCccceeeeccccee---ee-EEeEEeeCCCceEEEeecCeEEEEEccCCcccccceee-eeeeee
Q psy11885        153 VGTAGRKVCIWDLRNMGYIMQRRESSLKF---QT-RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA-FKCHRI  227 (327)
Q Consensus       153 ~~~~d~~v~iwD~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~h~~  227 (327)
                      +.+.||++-+.++.....+..........   +. ....+......++..+.++.+.+............... +.... 
T Consensus       194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~-  272 (386)
T 3sjl_D          194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE-  272 (386)
T ss_dssp             EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHH-
T ss_pred             EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccc-
Confidence            88899999999997633222211111100   00 01122212223344445555444333222110000000 00000 


Q ss_pred             ccCCeeeEEEeeEEEEecCCCeEEEecC----------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCC-EEEEEE
Q psy11885        228 KEDGIEKIYPVNAISFHQEYNTFATGGS----------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGN-VLAIAC  296 (327)
Q Consensus       228 ~~~~~~~~~~v~~v~~spd~~~lasgs~----------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~-~la~~~  296 (327)
                      ...+.. -.....++++|+++.+.+.-.          .++|.+.|..+++.+..+... .++++|+|||||+ +|.++.
T Consensus       273 ~~~g~~-p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn  350 (386)
T 3sjl_D          273 RADGWR-PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALS  350 (386)
T ss_dssp             HHTTEE-ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEE
T ss_pred             cccccc-CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEc
Confidence            000000 001234788999988877532          357999999999998887543 3678999999997 666654


Q ss_pred             c
Q psy11885        297 S  297 (327)
Q Consensus       297 ~  297 (327)
                      .
T Consensus       351 ~  351 (386)
T 3sjl_D          351 T  351 (386)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.46  E-value=7.9e-10  Score=94.10  Aligned_cols=261  Identities=7%  Similarity=-0.006  Sum_probs=157.5

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      +...+.++++++++ .++++...++.|.+||.. ++.....  .+...+..+++. ++...++...++.|..||.+. ..
T Consensus        13 ~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~   89 (299)
T 2z2n_A           13 QDTGPYGITVSDKG-KVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-II   89 (299)
T ss_dssp             SSCCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE
T ss_pred             cCCCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cE
Confidence            34689999999964 555555557899999998 6644332  234567788884 555555655578899999763 33


Q ss_pred             eee--ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee-ee-CCCcE--EEEecCCCeEEEEeCCCeEEEEE
Q psy11885         91 TVI--GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN-YT-QPDKV--FTMSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        91 ~~~--~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~-~~-~~~~~--~~~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      ..+  ......+..++++++++..++...++.|..||. +++.... .. .....  +.+...+..+++...++.|..||
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  168 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT  168 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence            222  224456889999999988887777899999998 5543322 11 11223  34455565555555678999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      . +.+.......... ..+..+.+.+++..++.....+.+.  .++.....  ......     .    ....+.+++++
T Consensus       169 ~-~g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~~~i~--~~~~~g~~--~~~~~~-----~----~~~~~~~i~~~  233 (299)
T 2z2n_A          169 E-SGDITEFKIPTPA-SGPVGITKGNDDALWFVEIIGNKIG--RITTSGEI--TEFKIP-----T----PNARPHAITAG  233 (299)
T ss_dssp             T-TCCEEEEECSSTT-CCEEEEEECTTSSEEEEETTTTEEE--EECTTCCE--EEEECS-----S----TTCCEEEEEEC
T ss_pred             C-CCcEEEeeCCCCC-CcceeEEECCCCCEEEEccCCceEE--EECCCCcE--EEEECC-----C----CCCCceeEEEC
Confidence            8 4432211011111 1234566666555333332334333  34431111  011000     0    00136789999


Q ss_pred             cCCCeEEEecCCCeEEEEeCCCceeeee-cCcCCcceEEEEECCCCCEEEEE
Q psy11885        245 QEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~~~~~~~~-~~~~~~~v~~l~fspdg~~la~~  295 (327)
                      |+|+.+++...++.|..||. +++.... +......+.++++ ++|+++++.
T Consensus       234 ~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~  283 (299)
T 2z2n_A          234 AGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAM  283 (299)
T ss_dssp             STTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEE
T ss_pred             CCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEe
Confidence            99998887767899999997 4443221 2333456899999 999887765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.45  E-value=1.4e-11  Score=109.05  Aligned_cols=190  Identities=11%  Similarity=0.011  Sum_probs=129.8

Q ss_pred             ceeeEEEe-CCceEEEEecCCcEEEEEcCCCc-----------eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeC
Q psy11885         59 PVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT-----------ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP  126 (327)
Q Consensus        59 ~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl  126 (327)
                      ++..++++ ....+++|+.+ .+++|+++...           ......+.. |..|+|  ++++|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            57778885 56677788877 56669865322           112334566 999999  88999998 8899999999


Q ss_pred             CCCceeeeee-CCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEE
Q psy11885        127 RSSRCVGNYT-QPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAA  205 (327)
Q Consensus       127 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (327)
                      ++........ ....+..+.+.+..+++++.||.|.+||+++....          .                       
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~----------~-----------------------  160 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTK----------Q-----------------------  160 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE----------E-----------------------
T ss_pred             hhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCccc----------c-----------------------
Confidence            8754332222 12234455555556899999999999999753210          0                       


Q ss_pred             EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee--eeec------C---
Q psy11885        206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR--LCQF------H---  274 (327)
Q Consensus       206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~--~~~~------~---  274 (327)
                                                  ....|.|++|||+|  ++.|..||++++|+...++.  ...+      .   
T Consensus       161 ----------------------------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~  210 (388)
T 1xip_A          161 ----------------------------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELP  210 (388)
T ss_dssp             ----------------------------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSC
T ss_pred             ----------------------------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCccccccc
Confidence                                        00137799999999  78899999999998776553  3334      2   


Q ss_pred             cCCcceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEEE
Q psy11885        275 RYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRH  318 (327)
Q Consensus       275 ~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~  318 (327)
                      +|+..|.+|.|.+++++|++-....-..  .++.-|...+||+.
T Consensus       211 ~~~~~V~sI~wl~~~~flv~y~~~~~~~--~~~~~~~~~~~ii~  252 (388)
T 1xip_A          211 VEEYSPLSVTILSPQDFLAVFGNVISET--DDEVSYDQKMYIIK  252 (388)
T ss_dssp             TTTSEEEEEEESSSSEEEEEEECCCCSS--CSSCCCCEEEEEEE
T ss_pred             CCCeeEEEEEEecCCeEEEEEcCCCCCc--CcccCCcceEEEEE
Confidence            3566799999999999998554332222  22323566899988

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.45  E-value=5.6e-11  Score=103.84  Aligned_cols=231  Identities=9%  Similarity=0.061  Sum_probs=138.8

Q ss_pred             CCeeEEEEecCCCcEEEEEECC---C--cEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC------------
Q psy11885         16 DGITAVKFAPNSNQFLLASSWD---C--NVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD------------   77 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d---~--~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D------------   77 (327)
                      ..+..++|+|++ +.|+.++.+   +  .|.+||+.+++......+.. +..++|+ ++..++.++.+            
T Consensus        59 ~~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDG-KKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            357889999965 566666543   3  48888998888665555444 8888995 77778776642            


Q ss_pred             ---------------CcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCC-------eEEEEeCCCCceeee
Q psy11885         78 ---------------CTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDT-------SVKMWDPRSSRCVGN  134 (327)
Q Consensus        78 ---------------g~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~-------~i~lwdl~~~~~~~~  134 (327)
                                     ..|.+||+.++.. ..+.. . .+..+.|+|+| .++++..+.       ..++|.+.+++....
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l  213 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM  213 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe
Confidence                           5688999988765 44443 3 78899999999 888876652       334444335543322


Q ss_pred             eeCCCcEEEEecCCCeEEEEeCC--------CeEEEEECCCCccceeeecccceeeeEE-eEEeeCCCceEEEeecCeEE
Q psy11885        135 YTQPDKVFTMSLCGEKFVVGTAG--------RKVCIWDLRNMGYIMQRRESSLKFQTRC-IKCFPNKQGYVLSSIEGRAA  205 (327)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~d--------~~v~iwD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  205 (327)
                      ... .....++++|+.++.++.+        ..|.+||  +.+.. .. .......... +.+. ++ .+++++.++...
T Consensus       214 ~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l-~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~  286 (347)
T 2gop_A          214 FEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GI-LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVN  286 (347)
T ss_dssp             EEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ES-STTCCSEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred             ccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceE-ec-cccCCcccCCccEEc-Cc-EEEEEecCCcEE
Confidence            222 3444557889888877644        3688888  33211 11 1111112232 4555 44 555666677777


Q ss_pred             EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeE-EEEeCCCceeeeecCcCC
Q psy11885        206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV-NIWDGFNKKRLCQFHRYD  277 (327)
Q Consensus       206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i-~iWd~~~~~~~~~~~~~~  277 (327)
                      ++ ++.+.    .... ..+    .     ..+.+++|+|  ..+++++.++.. +||.+. ++ ..++..+.
T Consensus       287 l~-~~~g~----~~~~-~~~----~-----~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n  340 (347)
T 2gop_A          287 LY-IWDGE----IKPI-AKG----R-----HWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYN  340 (347)
T ss_dssp             EE-EESSS----EEEE-ECS----S-----SEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTT
T ss_pred             EE-EcCCc----eEEE-ecC----C-----CeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEecccc
Confidence            77 65211    1111 111    0     1477899999  677777776654 777665 43 34444443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.43  E-value=8.4e-12  Score=118.97  Aligned_cols=236  Identities=11%  Similarity=-0.006  Sum_probs=138.9

Q ss_pred             EEEEe--cCCCcEEEEEE-CCCcEEEEECC--C-CeEEEEec-----CCCceeeEEEe-CCceEEEEecC----------
Q psy11885         20 AVKFA--PNSNQFLLASS-WDCNVSLYDIT--N-NNLRLKYA-----HSDPVLDCCFQ-DAVHSFSGGLD----------   77 (327)
Q Consensus        20 ~i~fs--~~~~~~l~s~~-~d~~i~iwd~~--~-~~~~~~~~-----h~~~v~~~~~~-~~~~~~sgs~D----------   77 (327)
                      ..+|+  |+++.+|+.++ .+..|.+|++.  + ++......     |...+..++|+ ++..+++++.|          
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            56666  87644155444 35677777776  3 55444433     55667888995 78889888877          


Q ss_pred             CcEEEEEcCC------Cceeeee-cCCccEEEEEEeCCCCEEEEEECC--------CeEEEEeCC-CC---ceeeeeeC-
Q psy11885         78 CTLKMFDFNT------QTETVIG-THDQPIRAVEYSDEVNCILTGSWD--------TSVKMWDPR-SS---RCVGNYTQ-  137 (327)
Q Consensus        78 g~i~vwd~~~------~~~~~~~-~h~~~V~~l~~~~~~~~l~sgs~d--------~~i~lwdl~-~~---~~~~~~~~-  137 (327)
                      ..|.+||+++      +....+. .+...+..++|+|||++|+.++.+        ..|++||+. ++   +....... 
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence            5899999988      5555555 556678889999999999987755        379999998 56   33333222 


Q ss_pred             CCc--EEEEecCCCeEEEEeCCC--eEEEEECCCCccceeeeccccee-------eeEEeEEeeCCCceEEEeecCeEEE
Q psy11885        138 PDK--VFTMSLCGEKFVVGTAGR--KVCIWDLRNMGYIMQRRESSLKF-------QTRCIKCFPNKQGYVLSSIEGRAAV  206 (327)
Q Consensus       138 ~~~--~~~~~~~~~~~~~~~~d~--~v~iwD~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i  206 (327)
                      ...  ...++++|+.++++..++  .|.+||+.+.+.. .........       ....+++.+++..++.+.. +...+
T Consensus       241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l  318 (662)
T 3azo_A          241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL  318 (662)
T ss_dssp             TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred             CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence            223  345677788666777777  6777776554321 111110000       0234555666666666665 77777


Q ss_pred             EEccCCcccccceeeeeeeeeccCCeeeEEEeeEE-EEecCCCeEEEecCCCe--EEEEeCCCcee
Q psy11885        207 EYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI-SFHQEYNTFATGGSDGY--VNIWDGFNKKR  269 (327)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v-~~spd~~~lasgs~dg~--i~iWd~~~~~~  269 (327)
                      +.++.....  . ..+..|.         ..+..+ +++++.-.+++++.+..  |++||..+++.
T Consensus       319 ~~~d~~~~~--~-~~l~~~~---------~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          319 GILDPESGE--L-VDAAGPW---------TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             EEEETTTTE--E-EECCSSC---------CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEECCCCc--E-EEecCCC---------CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence            766543211  1 1111111         123444 44444334455666654  55556666553

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.40  E-value=1.8e-10  Score=97.90  Aligned_cols=149  Identities=11%  Similarity=0.119  Sum_probs=100.2

Q ss_pred             CCeeEEEEecCCCcEEEEEEC-CCcEEEEECCCCeEEEEec--CCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee
Q psy11885         16 DGITAVKFAPNSNQFLLASSW-DCNVSLYDITNNNLRLKYA--HSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~--h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~   91 (327)
                      ..+..+++++.++.++++... ++.|++||. +++....+.  +...+..+++. ++..+++...++.|.+||.+.....
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~  155 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH  155 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred             cCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEE
Confidence            578899995324555555433 889999994 555433332  33457788884 5665566667889999997654333


Q ss_pred             eee--cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---Cc--EEEEecCCCeEEEEeCCC-eEEEE
Q psy11885         92 VIG--THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DK--VFTMSLCGEKFVVGTAGR-KVCIW  163 (327)
Q Consensus        92 ~~~--~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~d~-~v~iw  163 (327)
                      .+.  .+...+..++++++++.+++...++.|++||.. ++.+..+...   ..  .++++++|..+++...++ .|++|
T Consensus       156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~  234 (286)
T 1q7f_A          156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF  234 (286)
T ss_dssp             EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence            332  344568999999999877777789999999974 4555555332   22  345566676666666665 99999


Q ss_pred             ECC
Q psy11885        164 DLR  166 (327)
Q Consensus       164 D~~  166 (327)
                      |..
T Consensus       235 ~~~  237 (286)
T 1q7f_A          235 TQD  237 (286)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            853

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=5.1e-10  Score=95.98  Aligned_cols=241  Identities=15%  Similarity=0.136  Sum_probs=153.4

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeeecC-
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGTH-   96 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h-   96 (327)
                      -+..|+|+++.++++...++.|..||..+++.. .+.....+.++++. ++. ++.+. +..|.+||.+++....+... 
T Consensus        16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~   92 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVD   92 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECC
T ss_pred             cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecC
Confidence            478999976667777777899999999887753 33455678888885 555 55554 67899999987765433221 


Q ss_pred             ----CccEEEEEEeCCCCEEEEEEC-----------CCeEEEEeCCCCceeeeeeC--CCcEEEEecCCCeEEE-EeCCC
Q psy11885         97 ----DQPIRAVEYSDEVNCILTGSW-----------DTSVKMWDPRSSRCVGNYTQ--PDKVFTMSLCGEKFVV-GTAGR  158 (327)
Q Consensus        97 ----~~~V~~l~~~~~~~~l~sgs~-----------d~~i~lwdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~d~  158 (327)
                          ...++.++++++|+..++...           .+.|..+|.. ++.......  ....++++++++.+++ .+.++
T Consensus        93 ~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~  171 (297)
T 3g4e_A           93 NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSY  171 (297)
T ss_dssp             TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGT
T ss_pred             CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCC
Confidence                235788999999996665432           1344444443 332222221  1224566777776654 45678


Q ss_pred             eEEEEECC--CCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        159 KVCIWDLR--NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       159 ~v~iwD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      .|.+||+.  ++. +        .. .+                     + +.......                    .
T Consensus       172 ~i~~~~~d~~~G~-~--------~~-~~---------------------~-~~~~~~~~--------------------~  199 (297)
T 3g4e_A          172 SVDAFDYDLQTGQ-I--------SN-RR---------------------S-VYKLEKEE--------------------Q  199 (297)
T ss_dssp             EEEEEEECTTTCC-E--------EE-EE---------------------E-EEECCGGG--------------------C
T ss_pred             cEEEEeccCCCCc-c--------cC-cE---------------------E-EEECCCCC--------------------C
Confidence            89998863  211 0        00 00                     0 00000000                    0


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEEC-CCCCEEEEEEccc-cc---cCCCCCCCCC
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS-YDGNVLAIACSYN-YE---LETPPDPIPP  311 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fs-pdg~~la~~~~~~-~~---~~~~~~~~~~  311 (327)
                      .+..++++++|.+.++...++.|..||..+++.+..+..+...+++++|+ ||++.|.+++... +.   +...|   ..
T Consensus       200 ~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~~~~~~~~~~p---~~  276 (297)
T 3g4e_A          200 IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDGMDPEGLLRQP---EA  276 (297)
T ss_dssp             EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTTCCHHHHHHCT---TT
T ss_pred             CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcCCChhHccCCC---CC
Confidence            24568899999888888788899999998888888776665678999999 9998887776532 21   22222   46


Q ss_pred             CcEEEEE
Q psy11885        312 NNIFIRH  318 (327)
Q Consensus       312 ~~~~~~~  318 (327)
                      ..+|.+.
T Consensus       277 G~~f~~~  283 (297)
T 3g4e_A          277 GGIFKIT  283 (297)
T ss_dssp             TCEEEEE
T ss_pred             ceEEEec
Confidence            7888885

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.40  E-value=2.1e-10  Score=110.96  Aligned_cols=239  Identities=10%  Similarity=-0.008  Sum_probs=142.9

Q ss_pred             CCeeEEEEecCCCcEEEEEECC-C----cEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCc-----------
Q psy11885         16 DGITAVKFAPNSNQFLLASSWD-C----NVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCT-----------   79 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d-~----~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~-----------   79 (327)
                      ..+..++|||++ ++||.++.+ |    .|++||+.+++......+...+..++|++...++.++.|..           
T Consensus       163 ~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          163 TALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCC
T ss_pred             EEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCC
Confidence            367899999965 566655432 3    59999999988643322222235678863387887776654           


Q ss_pred             ---EEEEEcCCCce---eeeec--CCccEEEEEEeCCCCEEEEEECCC-----eEEEEeCCCC--ceeeeeeCC--CcEE
Q psy11885         80 ---LKMFDFNTQTE---TVIGT--HDQPIRAVEYSDEVNCILTGSWDT-----SVKMWDPRSS--RCVGNYTQP--DKVF  142 (327)
Q Consensus        80 ---i~vwd~~~~~~---~~~~~--h~~~V~~l~~~~~~~~l~sgs~d~-----~i~lwdl~~~--~~~~~~~~~--~~~~  142 (327)
                         |++|++.++..   .+...  +...+..+.|+|||++|+..+.++     .|.+||+.++  ++...+..+  ....
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~  321 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD  321 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred             CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence               88999977652   22322  223588999999999988777544     8999999876  313333321  2233


Q ss_pred             EEecCCCeEEEEeCC----CeEEEEECCCCc-cceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccc
Q psy11885        143 TMSLCGEKFVVGTAG----RKVCIWDLRNMG-YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK  217 (327)
Q Consensus       143 ~~~~~~~~~~~~~~d----~~v~iwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  217 (327)
                      .+.++++.++..+.+    +.|.+||+.+.. ........ .......+.+. .+..++....++...++.++.....  
T Consensus       322 ~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~--  397 (741)
T 1yr2_A          322 FVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP--  397 (741)
T ss_dssp             EEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE--
T ss_pred             EEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc--
Confidence            345778888887653    469999997642 11111111 11112233333 3333444555677777766632110  


Q ss_pred             ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE----EecCCCeEEEEeCCCce
Q psy11885        218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA----TGGSDGYVNIWDGFNKK  268 (327)
Q Consensus       218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la----sgs~dg~i~iWd~~~~~  268 (327)
                       ...+..+   +     ...+..++++|+++.|+    +....++|++||+.+++
T Consensus       398 -~~~l~~~---~-----~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          398 -AGAVSLP---G-----IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             -EEECBCS---S-----SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             -eeeccCC---C-----CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence             0011100   0     11367789999998776    33345799999988765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.38  E-value=1.4e-10  Score=111.41  Aligned_cols=226  Identities=8%  Similarity=-0.061  Sum_probs=133.3

Q ss_pred             CCCceeeEEEe-CCceEE-----EEecCCcEEEEEcCCCceeeeecCCccE--EEEEEeCCCCEEEEEECCCe-------
Q psy11885         56 HSDPVLDCCFQ-DAVHSF-----SGGLDCTLKMFDFNTQTETVIGTHDQPI--RAVEYSDEVNCILTGSWDTS-------  120 (327)
Q Consensus        56 h~~~v~~~~~~-~~~~~~-----sgs~Dg~i~vwd~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~sgs~d~~-------  120 (327)
                      |...+..++|+ ++.+++     +|+.+.+|++||+.++.... ..+...+  ..++|+|||+.|+.++.|..       
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            44457788886 777777     44455789999999876531 1121222  67899999999999998876       


Q ss_pred             ------EEEEeCCCCce----eeeeeCC-Cc--EEEEecCCCeEEEEeCCC----eEEEEECCCCccceeeecccceeee
Q psy11885        121 ------VKMWDPRSSRC----VGNYTQP-DK--VFTMSLCGEKFVVGTAGR----KVCIWDLRNMGYIMQRRESSLKFQT  183 (327)
Q Consensus       121 ------i~lwdl~~~~~----~~~~~~~-~~--~~~~~~~~~~~~~~~~d~----~v~iwD~~~~~~~~~~~~~~~~~~~  183 (327)
                            |++|++.+++.    +...... ..  ...++++|+.++..+.++    .|.+||..+.+... ..... .. .
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~-~~-~  274 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGV-GA-K  274 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECS-SC-C
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCC-Cc-e
Confidence                  99999988762    2222221 22  345778888888776555    67777664433211 11110 00 1


Q ss_pred             EEeEEeeCCCceEEEee-c-CeEEEEEccCCcccc-cceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEE
Q psy11885        184 RCIKCFPNKQGYVLSSI-E-GRAAVEYLDTGPEMQ-KMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN  260 (327)
Q Consensus       184 ~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~  260 (327)
                      .... .+++. +++.+. + ....++.++...... .....+. +.  .     ...+..++|+ ++.+++++..|+..+
T Consensus       275 ~~~~-~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~--~-----~~~l~~~~~~-~~~lv~~~~~dg~~~  343 (695)
T 2bkl_A          275 YEVH-AWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVP-ED--S-----SASLLSVSIV-GGHLSLEYLKDATSE  343 (695)
T ss_dssp             EEEE-EETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC-CC--S-----SCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred             EEEE-ecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEec-CC--C-----CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence            1112 24555 544433 1 234555555432211 0111111 10  0     0135677887 677888999999988


Q ss_pred             EEeCC-CceeeeecCcC-CcceEEEEECCCCCEEEEEE
Q psy11885        261 IWDGF-NKKRLCQFHRY-DTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       261 iWd~~-~~~~~~~~~~~-~~~v~~l~fspdg~~la~~~  296 (327)
                      ||.+. +++.+..+..+ ...+..++++||++.|+...
T Consensus       344 l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~  381 (695)
T 2bkl_A          344 VRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF  381 (695)
T ss_dssp             EEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred             EEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence            88654 35555555444 44578899999998887554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.36  E-value=9e-09  Score=89.44  Aligned_cols=245  Identities=10%  Similarity=-0.014  Sum_probs=150.3

Q ss_pred             eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeeecC
Q psy11885         18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGTH   96 (327)
Q Consensus        18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h   96 (327)
                      ....+|+|+++.++++...++.|..||..+++... +.....+.++++. ++..++ ++.+ .|.+||.+++....+...
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~v~~i~~~~dg~l~v-~~~~-gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HALPFMGSALAKISDSKQLI-ASDD-GLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EECSSCEEEEEEEETTEEEE-EETT-EEEEEETTTCCEEEEECS
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EECCCcceEEEEeCCCeEEE-EECC-CEEEEECCCCcEEEEeeC
Confidence            35789999766677777778999999998887543 2345678888885 555544 4444 499999877765433221


Q ss_pred             -----CccEEEEEEeCCCCEEEEEEC------CCeEEEEeCCCCceeeeeeC--CCcEEEEecCCCeEEEE-eCCCeEEE
Q psy11885         97 -----DQPIRAVEYSDEVNCILTGSW------DTSVKMWDPRSSRCVGNYTQ--PDKVFTMSLCGEKFVVG-TAGRKVCI  162 (327)
Q Consensus        97 -----~~~V~~l~~~~~~~~l~sgs~------d~~i~lwdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~d~~v~i  162 (327)
                           ...+..++++++|+.+++...      .+.|..+|  +++.......  ....++++++++.++.+ +.++.|.+
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~  205 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR  205 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence                 235889999999987665442      24565566  4443222111  11234566677766554 45678888


Q ss_pred             EECC--CC-ccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        163 WDLR--NM-GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       163 wD~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      ||+.  ++ ...      .    ...           ..         .+....                      ..+.
T Consensus       206 ~d~~~~~Gl~~~------~----~~~-----------~~---------~~~~~~----------------------~~p~  233 (326)
T 2ghs_A          206 VPLDARTGLPTG------K----AEV-----------FI---------DSTGIK----------------------GGMD  233 (326)
T ss_dssp             EEBCTTTCCBSS------C----CEE-----------EE---------ECTTSS----------------------SEEE
T ss_pred             EEcccccCCccc------C----ceE-----------EE---------ECCCCC----------------------CCCC
Confidence            8864  22 100      0    000           00         000000                      0135


Q ss_pred             EEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEEC-CCCCEEEEEEccccc----cCCCCCCCCCCcE
Q psy11885        240 AISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS-YDGNVLAIACSYNYE----LETPPDPIPPNNI  314 (327)
Q Consensus       240 ~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fs-pdg~~la~~~~~~~~----~~~~~~~~~~~~~  314 (327)
                      .++++++|.++++...++.|.+||. +++.+..+..+...+++++|+ ||++.|.+++.....    +...|   ....+
T Consensus       234 gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~~~~~~~~~~p---~~g~~  309 (326)
T 2ghs_A          234 GSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANP---QHGLT  309 (326)
T ss_dssp             EEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCT---TTTCE
T ss_pred             eeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCCCChhHhccCC---CCceE
Confidence            6888999988887767789999997 566666665555568999998 998888766554321    11111   35678


Q ss_pred             EEEEccccc
Q psy11885        315 FIRHVTDQE  323 (327)
Q Consensus       315 ~~~~~~~~~  323 (327)
                      |.+.+.-+|
T Consensus       310 ~~~~~~~~G  318 (326)
T 2ghs_A          310 FELGIEVKG  318 (326)
T ss_dssp             EECSSCCCC
T ss_pred             EEEeCCCCC
Confidence            877655444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.34  E-value=1e-10  Score=101.93  Aligned_cols=196  Identities=9%  Similarity=0.019  Sum_probs=123.8

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEe----------cCCCceeeEEEe--CCceEEEEe-cCCcEE
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKY----------AHSDPVLDCCFQ--DAVHSFSGG-LDCTLK   81 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~----------~h~~~v~~~~~~--~~~~~~sgs-~Dg~i~   81 (327)
                      .....|+|+|++ .++++...++.|++||..... .....          .+-.....+++.  ++..+++.+ .++.|+
T Consensus        91 ~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~  169 (329)
T 3fvz_A           91 YLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV  169 (329)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred             CCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence            578899999964 577777788999999987652 22222          122356788885  355555655 589999


Q ss_pred             EEEcCCCceeeeec----------CCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecC
Q psy11885         82 MFDFNTQTETVIGT----------HDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLC  147 (327)
Q Consensus        82 vwd~~~~~~~~~~~----------h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~  147 (327)
                      +|+.+......+..          +-.....++++++ ++.+++...+++|++||..+++.+..+..+   .....+.+.
T Consensus       170 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~  249 (329)
T 3fvz_A          170 QFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYI  249 (329)
T ss_dssp             EECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEE
T ss_pred             EEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeec
Confidence            99955433333321          1133789999998 666677778899999999888887776432   223333222


Q ss_pred             CCeEE--------EEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccce
Q psy11885        148 GEKFV--------VGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK  219 (327)
Q Consensus       148 ~~~~~--------~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  219 (327)
                      +..++        +...+..|++||..+++.+..                                   +.....     
T Consensus       250 pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~-----------------------------------~~~~~~-----  289 (329)
T 3fvz_A          250 PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV-----------------------------------FKPVRK-----  289 (329)
T ss_dssp             TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE-----------------------------------ECCSSS-----
T ss_pred             CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE-----------------------------------EcCCCC-----
Confidence            22222        222344677787765431100                                   000000     


Q ss_pred             eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885        220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN  266 (327)
Q Consensus       220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~  266 (327)
                                    +...+..++++|+|..+++...++.|++|+...
T Consensus       290 --------------~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          290 --------------HFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             --------------CCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             --------------ccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                          001256799999998889999999999999653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.31  E-value=1e-09  Score=98.31  Aligned_cols=252  Identities=10%  Similarity=0.023  Sum_probs=150.0

Q ss_pred             CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEe----------cCCcEEEEEcCCCcee-eee-c------CCc
Q psy11885         38 CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGG----------LDCTLKMFDFNTQTET-VIG-T------HDQ   98 (327)
Q Consensus        38 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs----------~Dg~i~vwd~~~~~~~-~~~-~------h~~   98 (327)
                      +.|.+.|..+++......-.... .++++ ++.+++.+.          .++.|.++|..+.+.. .+. .      ...
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~  177 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT  177 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence            79999999999965544322223 78885 788887665          3678999999887643 221 1      012


Q ss_pred             cEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeeeeeCCCcEEEEecC-CCeEEEEeCCCeEEEEECCCCccceeee
Q psy11885         99 PIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGNYTQPDKVFTMSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRR  175 (327)
Q Consensus        99 ~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~  175 (327)
                      ....+.++|||++++.+..  ++.|.+.|+.+++.+.++..+.. ..+.+. ...+++.+.||++.+.|+.+.+.. ...
T Consensus       178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~-~~~  255 (426)
T 3c75_H          178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCRDGSLARVDFADGETK-VTN  255 (426)
T ss_dssp             CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSSEEEEECCTTCCE-EEE
T ss_pred             CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcCCCCEEEEECCCCcEE-EEe
Confidence            2356889999999999875  58999999999999888876553 223333 345666778888888887443321 100


Q ss_pred             ccccee----eeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCee-eEEE--eeEEEEecCCC
Q psy11885        176 ESSLKF----QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE-KIYP--VNAISFHQEYN  248 (327)
Q Consensus       176 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~-~~~~--v~~v~~spd~~  248 (327)
                      ......    ......+.+++..++..+..+.+.+........  .+...+..  ....... ...+  ...++++|+++
T Consensus       256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~--~v~~~~~~--~~~~~i~~g~~p~g~~~va~s~dg~  331 (426)
T 3c75_H          256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA--TFRAPIEA--LTEAERADDWRPGGWQQTAYHRQSD  331 (426)
T ss_dssp             CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE--EECCCEES--SCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred             eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce--EEeeeeee--ccccccccccccCCceeeEEcCCCC
Confidence            000000    001122344555555555555444433221110  00000000  0000000 0001  22378999988


Q ss_pred             eEEEecC----------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCC-EEEEEEc
Q psy11885        249 TFATGGS----------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGN-VLAIACS  297 (327)
Q Consensus       249 ~lasgs~----------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~-~la~~~~  297 (327)
                      .+.+.-.          +++|.+.|..+.+.+..+.... ..+.++|+|||+ +|+++..
T Consensus       332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~  390 (426)
T 3c75_H          332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSA  390 (426)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEET
T ss_pred             EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcC
Confidence            7766532          4579999999999988875432 468999999999 7877763

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.31  E-value=5e-09  Score=90.90  Aligned_cols=233  Identities=11%  Similarity=0.004  Sum_probs=136.4

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEEecC----CcEEEEEcCCC
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLD----CTLKMFDFNTQ   88 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~D----g~i~vwd~~~~   88 (327)
                      ...+.+++|+|+ +.+++++..++.|.+||..+++..... .+...+.++++. ++..++++..+    +.|.+||.+++
T Consensus        44 ~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           44 GLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             CCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence            346789999995 467777778899999999988765443 466778899995 55555555555    58999998876


Q ss_pred             cee-eee--cCCccEEEEEEeCCCCEEEEEEC------CCeEEEEeCCCCceeeeeeC--CCcEEEEecCCCeEEEE-eC
Q psy11885         89 TET-VIG--THDQPIRAVEYSDEVNCILTGSW------DTSVKMWDPRSSRCVGNYTQ--PDKVFTMSLCGEKFVVG-TA  156 (327)
Q Consensus        89 ~~~-~~~--~h~~~V~~l~~~~~~~~l~sgs~------d~~i~lwdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~  156 (327)
                      ... .+.  .+...+..++++++|+.+++...      .+.|..+|..+++.......  ....+.++++++.++++ +.
T Consensus       123 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~  202 (333)
T 2dg1_A          123 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT  202 (333)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             EEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCC
Confidence            654 222  23457899999999987776654      35677777765544322221  12234566777766544 56


Q ss_pred             CCeEEEEECCCC-ccceee---ecccce--eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccC
Q psy11885        157 GRKVCIWDLRNM-GYIMQR---RESSLK--FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED  230 (327)
Q Consensus       157 d~~v~iwD~~~~-~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~  230 (327)
                      ++.|.+||+++. +.....   ......  ..+..+.+.+++..++....++.+.+  ++....   ....+..+..   
T Consensus       203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~--~d~~g~---~~~~~~~~~~---  274 (333)
T 2dg1_A          203 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLV--FNKRGY---PIGQILIPGR---  274 (333)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEE--ECTTSC---EEEEEECTTG---
T ss_pred             CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEE--ECCCCC---EEEEEEcCCC---
Confidence            789999998642 211100   000000  12345666666554443333444444  443211   1111111000   


Q ss_pred             CeeeEEEeeEEEEecCCCeEEEecCC
Q psy11885        231 GIEKIYPVNAISFHQEYNTFATGGSD  256 (327)
Q Consensus       231 ~~~~~~~v~~v~~spd~~~lasgs~d  256 (327)
                      ..++...+.+++|+||++.|..++.+
T Consensus       275 ~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          275 DEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ccccccCcceEEECCCCCEEEEEeCc
Confidence            00001135789999998777655544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.29  E-value=2.6e-08  Score=84.65  Aligned_cols=262  Identities=8%  Similarity=-0.008  Sum_probs=155.3

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      ....+.+++++++ +.+.++...++.|.+||.. ++.....  .....+..+++. ++...++...++.|..+|.+ +..
T Consensus        18 ~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           18 PDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             TTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            3468899999996 4566655568999999988 6643322  123457777775 45555555557889999987 443


Q ss_pred             eee--ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee-eeC-CCcE--EEEecCCCeEEEEeCCCeEEEEE
Q psy11885         91 TVI--GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN-YTQ-PDKV--FTMSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        91 ~~~--~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~-~~~-~~~~--~~~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      ..+  ......+..+++.++++..++...++.|..+|.. ++.... +.. ....  +.+...++.+++...++.|..+|
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT  173 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence            322  2234568899999999887777768899999987 554321 221 1223  34455566455555578899999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      . +.+.......... ..+..+.+.+++..+++....+.+.  .++.....  ......     . .   ...+.+++++
T Consensus       174 ~-~g~~~~~~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~i~--~~~~~g~~--~~~~~~-----~-~---~~~~~~i~~d  238 (300)
T 2qc5_A          174 N-TGKLEEYPLPTNA-AAPVGITSGNDGALWFVEIMGNKIG--RITTTGEI--SEYDIP-----T-P---NARPHAITAG  238 (300)
T ss_dssp             T-TCCEEEEECSSTT-CCEEEEEECTTSSEEEEETTTTEEE--EECTTCCE--EEEECS-----S-T---TCCEEEEEEC
T ss_pred             C-CCcEEEeeCCCCC-CCcceEEECCCCCEEEEccCCCEEE--EEcCCCcE--EEEECC-----C-C---CCCceEEEEC
Confidence            8 3332211111111 1235555555554333332233333  34431111  011000     0 0   0135789999


Q ss_pred             cCCCeEEEecCCCeEEEEeCCCceeee-ecCcCCcceEEEEECCCCCEEEEE
Q psy11885        245 QEYNTFATGGSDGYVNIWDGFNKKRLC-QFHRYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~~~~~~~-~~~~~~~~v~~l~fspdg~~la~~  295 (327)
                      ++++.+++...++.|..||. +++... .+......+.+++++|+|+++++.
T Consensus       239 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  289 (300)
T 2qc5_A          239 KNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFAL  289 (300)
T ss_dssp             STTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred             CCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEc
Confidence            99998887777899999997 444322 222233457899999999876644

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=9.2e-09  Score=92.29  Aligned_cols=233  Identities=12%  Similarity=0.074  Sum_probs=143.4

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCC--cEEEEEcCCCce-e
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDC--TLKMFDFNTQTE-T   91 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg--~i~vwd~~~~~~-~   91 (327)
                      .....|+|+++ +.++++...++.|++||..++++........... ++|. ++..++.+..++  .|.+|+...+.. .
T Consensus       131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            46789999995 4666766667899999999888665544333333 7774 677788888766  688888765543 2


Q ss_pred             ee---ec-CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee----eeC---CC-c-EEEEecCCCeE-EEEeCC
Q psy11885         92 VI---GT-HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN----YTQ---PD-K-VFTMSLCGEKF-VVGTAG  157 (327)
Q Consensus        92 ~~---~~-h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~----~~~---~~-~-~~~~~~~~~~~-~~~~~d  157 (327)
                      .+   .. ....+.+++++|++..|+.+..+++|+.||+.++.....    ...   .. . -+++++.+..+ ++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            22   12 345578899999655666677789999999987653221    111   11 1 56667644444 444566


Q ss_pred             CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885        158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP  237 (327)
Q Consensus       158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  237 (327)
                      +.|+.||.....              ..          +.+......    +..+...   ..             ....
T Consensus       289 ~~I~~~~~~g~~--------------~~----------~~g~~~~~g----~~dg~~~---~~-------------~~~~  324 (409)
T 3hrp_A          289 SSVYKITPDGEC--------------EW----------FCGSATQKT----VQDGLRE---EA-------------LFAQ  324 (409)
T ss_dssp             TEEEEECTTCCE--------------EE----------EEECTTCCS----CBCEEGG---GC-------------BCSS
T ss_pred             CEEEEEecCCCE--------------EE----------EEeCCCCCC----cCCCccc---cc-------------EeCC
Confidence            788888765310              00          000000000    0000000   00             0012


Q ss_pred             eeEEEEecCCCeEEEec-CCCeEEEEeCCCceeeeecCcC---------------CcceEEEEECCCCCEEEEE
Q psy11885        238 VNAISFHQEYNTFATGG-SDGYVNIWDGFNKKRLCQFHRY---------------DTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       238 v~~v~~spd~~~lasgs-~dg~i~iWd~~~~~~~~~~~~~---------------~~~v~~l~fspdg~~la~~  295 (327)
                      ...++++|+|.++++-+ .++.|+.|+..+++.. .+.++               -.....|+++|+|.++++-
T Consensus       325 P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad  397 (409)
T 3hrp_A          325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE  397 (409)
T ss_dssp             EEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred             CeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence            56799999999888888 8899999997777643 22221               1236899999998776654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.26  E-value=1.8e-08  Score=88.85  Aligned_cols=252  Identities=12%  Similarity=0.039  Sum_probs=147.1

Q ss_pred             EEEEecCCCcEEEEEE----------CCCcEEEEECCCCeEEEEec--C------CCceeeEEEe-CCceEEEEec--CC
Q psy11885         20 AVKFAPNSNQFLLASS----------WDCNVSLYDITNNNLRLKYA--H------SDPVLDCCFQ-DAVHSFSGGL--DC   78 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~--h------~~~v~~~~~~-~~~~~~sgs~--Dg   78 (327)
                      .++++|++ ++|+++.          .++.|.+||..+.+......  .      ......++|+ ++.+++.+..  ++
T Consensus        82 ~va~spDG-~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~  160 (386)
T 3sjl_D           82 NPVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  160 (386)
T ss_dssp             EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             cEEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence            49999976 4444443          36789999999988644332  1      1134567884 8888887764  68


Q ss_pred             cEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC-Cceeeeee---CC--CcE---EEEecCC
Q psy11885         79 TLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS-SRCVGNYT---QP--DKV---FTMSLCG  148 (327)
Q Consensus        79 ~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-~~~~~~~~---~~--~~~---~~~~~~~  148 (327)
                      .|.++|+.+++.. .+.. .+.  ...+....+.+++.+.||++-..++.+ ++......   ..  ..+   ..+....
T Consensus       161 ~VsVID~~t~~vv~tI~v-~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~d  237 (386)
T 3sjl_D          161 AVGVVDLEGKAFKRMLDV-PDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA  237 (386)
T ss_dssp             EEEEEETTTTEEEEEEEC-CSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred             eEEEEECCCCcEEEEEEC-CCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCC
Confidence            9999999987653 2321 111  223333446777888899988888876 55422111   11  111   1232223


Q ss_pred             CeEEEEeCCCeEEEEECCCCcc-ceeeec--------ccc-eeeeEEeEEeeCCCceEEEeec--------CeEEEEEcc
Q psy11885        149 EKFVVGTAGRKVCIWDLRNMGY-IMQRRE--------SSL-KFQTRCIKCFPNKQGYVLSSIE--------GRAAVEYLD  210 (327)
Q Consensus       149 ~~~~~~~~d~~v~iwD~~~~~~-~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~  210 (327)
                      ..++..+.++.|.+.|+.+... +.....        ... +.....+.++++.+.+.+....        ....|+.+|
T Consensus       238 G~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD  317 (386)
T 3sjl_D          238 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  317 (386)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence            3555577789999999975432 111000        000 1011224455665555554321        124555565


Q ss_pred             CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC-eEEE-ecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCC
Q psy11885        211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TFAT-GGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  288 (327)
Q Consensus       211 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~-~las-gs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspd  288 (327)
                      .....  +...+.          .-..++.++++||++ +|.+ ...+++|.++|..+++.+.++.....+ +.|.+++|
T Consensus       318 ~~t~k--v~~~i~----------vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p-~~l~~s~d  384 (386)
T 3sjl_D          318 AKTGE--RLAKFE----------MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG-PQVITTAD  384 (386)
T ss_dssp             TTTCC--EEEEEE----------EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS-CCEEEECC
T ss_pred             CCCCe--EEEEEE----------CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCC-ceeEECCc
Confidence            43321  111111          012577899999997 5555 556899999999999998887643322 56788887

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.25  E-value=8e-09  Score=98.64  Aligned_cols=282  Identities=12%  Similarity=0.129  Sum_probs=164.5

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCC------CceeeEEEeCCceEEEEec------CCcEEEEEcCCCceee-eec
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHS------DPVLDCCFQDAVHSFSGGL------DCTLKMFDFNTQTETV-IGT   95 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~------~~v~~~~~~~~~~~~sgs~------Dg~i~vwd~~~~~~~~-~~~   95 (327)
                      ..+++++.|+.+..+|..+|++.-.....      ..+.+.-...+..++.++.      ++.|+.+|..+++... +..
T Consensus       129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~  208 (677)
T 1kb0_A          129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS  208 (677)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence            46777888999999999999865443321      1222211122445555543      7899999999887542 111


Q ss_pred             C--C------------------------------ccEEEEEEeCCCCEEEEEECCC-------------------eEEEE
Q psy11885         96 H--D------------------------------QPIRAVEYSDEVNCILTGSWDT-------------------SVKMW  124 (327)
Q Consensus        96 h--~------------------------------~~V~~l~~~~~~~~l~sgs~d~-------------------~i~lw  124 (327)
                      .  .                              .....+.++++++.++.++.++                   .|..+
T Consensus       209 ~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~Al  288 (677)
T 1kb0_A          209 VPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVAL  288 (677)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             CCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEE
Confidence            1  0                              0113567889999999887664                   59999


Q ss_pred             eCCCCceeeeeeCCC-----------c-EEEEecCC---CeEEEEeCCCeEEEEECCCCccceeeecccceee-------
Q psy11885        125 DPRSSRCVGNYTQPD-----------K-VFTMSLCG---EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQ-------  182 (327)
Q Consensus       125 dl~~~~~~~~~~~~~-----------~-~~~~~~~~---~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~-------  182 (327)
                      |.++++.++.++...           . ......+|   ..+++++.+|.+.++|.++++.+...........       
T Consensus       289 D~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g  368 (677)
T 1kb0_A          289 DPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHG  368 (677)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTS
T ss_pred             ECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCC
Confidence            999999888765311           1 12233355   5688889999999999998876533221110000       


Q ss_pred             --------------------------eEEeEEeeCCCceEEEeecC----------------------------------
Q psy11885        183 --------------------------TRCIKCFPNKQGYVLSSIEG----------------------------------  202 (327)
Q Consensus       183 --------------------------~~~~~~~~~~~~~~~~~~~~----------------------------------  202 (327)
                                                ...+++.|....+.+...+.                                  
T Consensus       369 ~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~  448 (677)
T 1kb0_A          369 KPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNA  448 (677)
T ss_dssp             CEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECS
T ss_pred             ceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccccc
Confidence                                      01234444444444433210                                  


Q ss_pred             -------eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc
Q psy11885        203 -------RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  275 (327)
Q Consensus       203 -------~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~  275 (327)
                             ...+.-+|....  ++.+.+.. .         .++....+.+++..++.|+.||.+++||..+++.+.++..
T Consensus       449 ~~~~~~~~g~l~A~D~~tG--~~~W~~~~-~---------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          449 EPPKSKPFGRLLAWDPVAQ--KAAWSVEH-V---------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             SCCCSCCEEEEEEEETTTT--EEEEEEEE-S---------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCccEEEEEeCCCC--cEEeecCC-C---------CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence                   012222222111  11111110 0         0233445667888899999999999999999999988764


Q ss_pred             CCc-ceEEEEECCCCC-EEEEEEccccccC---CCCCCCCCCcEEEEEcccc
Q psy11885        276 YDT-GITSLCFSYDGN-VLAIACSYNYELE---TPPDPIPPNNIFIRHVTDQ  322 (327)
Q Consensus       276 ~~~-~v~~l~fspdg~-~la~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  322 (327)
                      ... ...-+.|+++|+ ++++.++++..+.   .+......+.++++.|...
T Consensus       517 ~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~~  568 (677)
T 1kb0_A          517 GTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGK  568 (677)
T ss_dssp             SSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCB
T ss_pred             CCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecccc
Confidence            332 224467888987 5555555444322   2222234678888877643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=7.3e-09  Score=90.66  Aligned_cols=258  Identities=10%  Similarity=0.035  Sum_probs=151.7

Q ss_pred             CCeeEEEEecCCCcEEEEEE--CCCcEEEEECCCCeEEEEe-------cCCCceeeEEEeCCceEEEEe-c-----CCcE
Q psy11885         16 DGITAVKFAPNSNQFLLASS--WDCNVSLYDITNNNLRLKY-------AHSDPVLDCCFQDAVHSFSGG-L-----DCTL   80 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~sgs-~-----Dg~i   80 (327)
                      ..+..++++|+ ++++++..  .++.++||.+.++++....       .+-..+..+++.....++... .     ++.|
T Consensus        17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCC-CCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            57889999996 46777653  2343666666566544221       123467788886434455433 2     5789


Q ss_pred             EEEEcCCCce-eeeec------CCccEEEEEEeCCCCEE-EEEE---CCCeEEEEeCCCCceeeeeeCCCc----EEEEe
Q psy11885         81 KMFDFNTQTE-TVIGT------HDQPIRAVEYSDEVNCI-LTGS---WDTSVKMWDPRSSRCVGNYTQPDK----VFTMS  145 (327)
Q Consensus        81 ~vwd~~~~~~-~~~~~------h~~~V~~l~~~~~~~~l-~sgs---~d~~i~lwdl~~~~~~~~~~~~~~----~~~~~  145 (327)
                      .+||+.+++. ..+..      +......+++++++..+ ++..   .++.|.+||+.+++....+..+..    ...+.
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            9999987763 22221      22356889999765555 4444   578999999988876554432100    02233


Q ss_pred             cCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcc------cccce
Q psy11885        146 LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE------MQKMK  219 (327)
Q Consensus       146 ~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~  219 (327)
                      ..+..+.+...++.++.|..                ....+++.++++.+..+...+. .++.++....      .....
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~----------------~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~  238 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHL----------------GVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELG  238 (343)
T ss_dssp             ETTEECBEECTTSCEECCCC----------------CEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHH
T ss_pred             ECCEEEEeccCCCceeceec----------------ccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhh
Confidence            34555666666777766642                1245677777765665554443 3333331100      00000


Q ss_pred             eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc-CCcceEEEEECCCCCEEEEEEcc
Q psy11885        220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-YDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~-~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      ..+...       ++......++++++|.++++...++.|.+||..+++....... ......+++|+|+|+++++.+..
T Consensus       239 ~~~~~~-------g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          239 SKIERY-------SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             TTCEEE-------EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             cceEec-------ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            000000       0001246799999999999999999999999855653322221 12347899999999988887654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.24  E-value=7.4e-09  Score=96.59  Aligned_cols=192  Identities=10%  Similarity=0.033  Sum_probs=120.0

Q ss_pred             eEEEEecCCcEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCC--CCceeeeeeCCCc--EEEE
Q psy11885         70 HSFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR--SSRCVGNYTQPDK--VFTM  144 (327)
Q Consensus        70 ~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~--~~~~~~~~~~~~~--~~~~  144 (327)
                      .+++...+++|.++|..+++.. .+. ....+..+.++|||+++++++.|+.|.+||+.  +++.+.++.....  .+.+
T Consensus       169 ~~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~  247 (567)
T 1qks_A          169 FSVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  247 (567)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEE
Confidence            4457777899999999987654 333 23356789999999999999999999999996  7777777765332  3566


Q ss_pred             e----cCCCeEEEEe-CCCeEEEEECCCCccceeeecccc--------ee-eeEEeEEeeCCCceEEEeecCeEEEEEcc
Q psy11885        145 S----LCGEKFVVGT-AGRKVCIWDLRNMGYIMQRRESSL--------KF-QTRCIKCFPNKQGYVLSSIEGRAAVEYLD  210 (327)
Q Consensus       145 ~----~~~~~~~~~~-~d~~v~iwD~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  210 (327)
                      +    ++|+.++++. .+++|.++|..+.+.+........        +. ....+..++....+++.. .....++.++
T Consensus       248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-~~~g~v~~vd  326 (567)
T 1qks_A          248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-KETGKILLVD  326 (567)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-TTTTEEEEEE
T ss_pred             ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-cCCCeEEEEe
Confidence            7    5788776654 568999999988765433221110        00 112333344434433333 2223333344


Q ss_pred             CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec-CCCeEEEEeCCCceeeeec
Q psy11885        211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       211 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs-~dg~i~iWd~~~~~~~~~~  273 (327)
                      ...........+.     ..     .....+.|+|++++|+++. .++.|.++|..+++.+..+
T Consensus       327 ~~~~~~~~v~~i~-----~~-----~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i  380 (567)
T 1qks_A          327 YTDLNNLKTTEIS-----AE-----RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  380 (567)
T ss_dssp             TTCSSEEEEEEEE-----CC-----SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             cCCCccceeeeee-----cc-----ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence            3221100000000     00     0134678999999987665 5689999999998876554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.22  E-value=4.1e-09  Score=101.92  Aligned_cols=223  Identities=11%  Similarity=0.010  Sum_probs=129.1

Q ss_pred             ceeeEEEe-CCceEEEEecC-----CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCe------------
Q psy11885         59 PVLDCCFQ-DAVHSFSGGLD-----CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTS------------  120 (327)
Q Consensus        59 ~v~~~~~~-~~~~~~sgs~D-----g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~------------  120 (327)
                      .+...+|+ ++.+++.++.+     .+|++||++++.......+...+..++|+|| +.|+.++.|+.            
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~  242 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN  242 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence            56777886 77877765543     3599999998875433222222357899999 99998887654            


Q ss_pred             --EEEEeCCCCcee--eeeeCCC-----cEEEEecCCCeEEEEeCC-----CeEEEEECCCC--ccceeeecccceeeeE
Q psy11885        121 --VKMWDPRSSRCV--GNYTQPD-----KVFTMSLCGEKFVVGTAG-----RKVCIWDLRNM--GYIMQRRESSLKFQTR  184 (327)
Q Consensus       121 --i~lwdl~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~d-----~~v~iwD~~~~--~~~~~~~~~~~~~~~~  184 (327)
                        |++|++.++...  ..+..+.     ....++++|+.++..+.+     ..|.+||+.+.  +....... ..... .
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~-~  320 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-DLKAQ-W  320 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-SSSSC-E
T ss_pred             CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-CCCce-E
Confidence              899999876521  1222211     234567788888776644     38999998765  20111111 11111 1


Q ss_pred             EeEEeeCCCceEEEeecC--eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEE
Q psy11885        185 CIKCFPNKQGYVLSSIEG--RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW  262 (327)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iW  262 (327)
                      . .+.++++.++..+..+  ...++.++...........+..+.         ..+..++++ ++.++++...|+..+||
T Consensus       321 ~-~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---------~~l~~~~~~-~~~lv~~~~~dg~~~l~  389 (741)
T 1yr2_A          321 D-FVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---------DNLESVGIA-GNRLFASYIHDAKSQVL  389 (741)
T ss_dssp             E-EEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---------SEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred             E-EEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---------CeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence            1 1236666666555432  234444543321001111111110         124566776 56678888899988777


Q ss_pred             eCC-CceeeeecCcC-CcceEEEEECCCCCEEEEE
Q psy11885        263 DGF-NKKRLCQFHRY-DTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       263 d~~-~~~~~~~~~~~-~~~v~~l~fspdg~~la~~  295 (327)
                      ... +++.+..+..+ ...+..++++||++.|+..
T Consensus       390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~  424 (741)
T 1yr2_A          390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS  424 (741)
T ss_dssp             EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred             EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence            543 45555555432 4568899999999877654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.22  E-value=1.1e-08  Score=97.92  Aligned_cols=282  Identities=11%  Similarity=0.090  Sum_probs=162.1

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCC------Cceee-EEEeCCceEEEEe------cCCcEEEEEcCCCceee-ee
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHS------DPVLD-CCFQDAVHSFSGG------LDCTLKMFDFNTQTETV-IG   94 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~------~~v~~-~~~~~~~~~~sgs------~Dg~i~vwd~~~~~~~~-~~   94 (327)
                      ..+++++.|+.|.-+|..+|++.-.+...      ..+.+ ....+ ..++.++      .++.|..||..+++... +.
T Consensus       122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            36778889999999999999865433221      11211 11223 3445443      37899999999887642 11


Q ss_pred             c--CC-----------------------------ccEEEEEEeCCCCEEEEEECCCe-------------------EEEE
Q psy11885         95 T--HD-----------------------------QPIRAVEYSDEVNCILTGSWDTS-------------------VKMW  124 (327)
Q Consensus        95 ~--h~-----------------------------~~V~~l~~~~~~~~l~sgs~d~~-------------------i~lw  124 (327)
                      .  +.                             ..-..+.++++.+.++.++.++.                   |..|
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            1  00                             01125788898899999887764                   9999


Q ss_pred             eCCCCceeeeeeCC----------CcE--EEEecCCC---eEEEEeCCCeEEEEECCCCccceeeecccce--ee-----
Q psy11885        125 DPRSSRCVGNYTQP----------DKV--FTMSLCGE---KFVVGTAGRKVCIWDLRNMGYIMQRRESSLK--FQ-----  182 (327)
Q Consensus       125 dl~~~~~~~~~~~~----------~~~--~~~~~~~~---~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~--~~-----  182 (327)
                      |.++++.++.++..          ...  ..+...|.   .++.++.+|.+.++|.++++.+.........  ..     
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            99999998876531          111  12233454   5778889999999999988765222111100  00     


Q ss_pred             ------------------------------eEEeEEeeCCCceEEEeecCe-----------------------------
Q psy11885        183 ------------------------------TRCIKCFPNKQGYVLSSIEGR-----------------------------  203 (327)
Q Consensus       183 ------------------------------~~~~~~~~~~~~~~~~~~~~~-----------------------------  203 (327)
                                                    ...+++.|....+.+...+..                             
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                                          001334444443333322111                             


Q ss_pred             --------------EEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee
Q psy11885        204 --------------AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR  269 (327)
Q Consensus       204 --------------~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~  269 (327)
                                    ..+.-+|....  ++.+.+..+          .+...-.+...+..++.|+.||.++.||..+|+.
T Consensus       441 ~~~~~~~~~~~~~~g~l~A~D~~tG--~~~W~~~~~----------~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGKLIAWDPVKQ--QAAWEVPYV----------TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             SSHHHHHHHHTTCEEEEEEEETTTT--EEEEEEEES----------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccCCCCCCCcceeEEEEECCCC--CeEeEccCC----------CCccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence                          11222222111  111111110          0122335566788899999999999999999999


Q ss_pred             eeecCcCCcc-eEEEEECCCCC-EEEEEEccccccCCC-------CCCCCCCcEEEEEccccc
Q psy11885        270 LCQFHRYDTG-ITSLCFSYDGN-VLAIACSYNYELETP-------PDPIPPNNIFIRHVTDQE  323 (327)
Q Consensus       270 ~~~~~~~~~~-v~~l~fspdg~-~la~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  323 (327)
                      +.++...... ..-+.|+.||+ |+++.++++..+..+       .....-+.+++|.+-..+
T Consensus       509 lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~gg~~~~~~~~~~~~~~~~~g~~~~~f~l~~~~  571 (689)
T 1yiq_A          509 LWEQPAASGVMAAPVTYSVDGEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGTA  571 (689)
T ss_dssp             EEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTHHHHTHHHHGGGCCCCCCEEEEEEETCCC
T ss_pred             ceeeeCCCCcccCceEEEECCEEEEEEEecCCccccccccccccccccCCCceEEEeecCCcc
Confidence            9887543322 24478889988 555555544433211       122356678888765443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.22  E-value=1.3e-08  Score=97.53  Aligned_cols=224  Identities=13%  Similarity=0.101  Sum_probs=132.3

Q ss_pred             CCCCeeEEEEecCCCcEEE-EEEC----CCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCc---------
Q psy11885         14 PEDGITAVKFAPNSNQFLL-ASSW----DCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCT---------   79 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~-s~~~----d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~---------   79 (327)
                      +...+..++|||++ ++|| +.+.    +.+|++||+.+++......+......++|+++..++.++.+..         
T Consensus       127 ~~~~l~~~~~SpDg-~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          127 GTTALDQLSFSRDG-RILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             SCCEEEEEEECTTS-SEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------C
T ss_pred             CcEEEEEEEECCCC-CEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccC
Confidence            44568889999975 5555 3332    2579999999998543211111124567887788887777743         


Q ss_pred             ----EEEEEcCCCce--eee-ec---CCccEEEEEEeCCCCEEEEE-E---CCCeEEEEeCCCCc-eeeeeeCC-C-cEE
Q psy11885         80 ----LKMFDFNTQTE--TVI-GT---HDQPIRAVEYSDEVNCILTG-S---WDTSVKMWDPRSSR-CVGNYTQP-D-KVF  142 (327)
Q Consensus        80 ----i~vwd~~~~~~--~~~-~~---h~~~V~~l~~~~~~~~l~sg-s---~d~~i~lwdl~~~~-~~~~~~~~-~-~~~  142 (327)
                          |++|++.+...  ..+ ..   |...+..+.++|||++|+.. +   .++.|.++|+.+++ ....+..+ . ...
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~  285 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS  285 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence                99999987643  222 22   33456789999999987543 3   23589999997763 23333322 1 222


Q ss_pred             EEecCCCeEEEEeCC----CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccc
Q psy11885        143 TMSLCGEKFVVGTAG----RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM  218 (327)
Q Consensus       143 ~~~~~~~~~~~~~~d----~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  218 (327)
                      .+...++.++..+..    ..|..+|+.+.+..      ...                                      
T Consensus       286 ~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~------~~~--------------------------------------  321 (693)
T 3iuj_A          286 LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA------HWR--------------------------------------  321 (693)
T ss_dssp             EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG------GCE--------------------------------------
T ss_pred             EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------ccE--------------------------------------
Confidence            355666666555432    45667776543210      000                                      


Q ss_pred             eeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC-CC--eEEEEeCCCceeeeecC-cCCcceEEEEECCCCCEEEE
Q psy11885        219 KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DG--YVNIWDGFNKKRLCQFH-RYDTGITSLCFSYDGNVLAI  294 (327)
Q Consensus       219 ~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~-dg--~i~iWd~~~~~~~~~~~-~~~~~v~~l~fspdg~~la~  294 (327)
                        .+..|..         .+.  .|+|+++.|+.... ++  .|++|++..+ ....+. .....+..++++||++.|+.
T Consensus       322 --~l~~~~~---------~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~  387 (693)
T 3iuj_A          322 --DLIPERQ---------QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYF  387 (693)
T ss_dssp             --EEECCCS---------SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEE
T ss_pred             --EEecCCC---------CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEE
Confidence              0000000         011  67788887776554 44  6888987644 334433 23345777888999888776


Q ss_pred             EE
Q psy11885        295 AC  296 (327)
Q Consensus       295 ~~  296 (327)
                      ..
T Consensus       388 ~~  389 (693)
T 3iuj_A          388 GF  389 (693)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.21  E-value=4.2e-09  Score=90.57  Aligned_cols=223  Identities=8%  Similarity=-0.026  Sum_probs=138.4

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeeec
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGT   95 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~   95 (327)
                      -....+|+|+++.+++++..++.|..|+. +++......+...+..+++. ++..+++...++.|.+|+.+ +....+..
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~  123 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG  123 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe
Confidence            45678999976557777777899999998 45544444455667888885 55544444445789999986 43332221


Q ss_pred             C-----CccEEEEEEeCCCCEEEE----EEC-------------CCeEEEEeCCCCceeeeeeC-CCcEEEEecCCCeEE
Q psy11885         96 H-----DQPIRAVEYSDEVNCILT----GSW-------------DTSVKMWDPRSSRCVGNYTQ-PDKVFTMSLCGEKFV  152 (327)
Q Consensus        96 h-----~~~V~~l~~~~~~~~l~s----gs~-------------d~~i~lwdl~~~~~~~~~~~-~~~~~~~~~~~~~~~  152 (327)
                      +     ...+..++++++|+..+|    |..             .+.|..||..+++....... ....++++++++.++
T Consensus       124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~ly  203 (305)
T 3dr2_A          124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLY  203 (305)
T ss_dssp             EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEE
T ss_pred             ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEE
Confidence            1     134678999999998886    332             25688888866654332211 112356677777777


Q ss_pred             EEeCC------CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeee
Q psy11885        153 VGTAG------RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR  226 (327)
Q Consensus       153 ~~~~d------~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~  226 (327)
                      ++...      +.|.+||+.... +        ..  .                    .+. .+...             
T Consensus       204 v~~~~~~~~~~~~i~~~~~~~~~-l--------~~--~--------------------~~~-~~~~~-------------  238 (305)
T 3dr2_A          204 VSQTPEQGHGSVEITAFAWRDGA-L--------HD--R--------------------RHF-ASVPD-------------  238 (305)
T ss_dssp             EEECCC---CCCEEEEEEEETTE-E--------EE--E--------------------EEE-ECCSS-------------
T ss_pred             EEecCCcCCCCCEEEEEEecCCC-c--------cC--C--------------------eEE-EECCC-------------
Confidence            66554      577777764321 0        00  0                    000 00000             


Q ss_pred             eccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       227 ~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                               .....++++++|++.++. .+ .|.+|+. +++.+..+.... .+.+++|+|+++.|..++...
T Consensus       239 ---------~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          239 ---------GLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             ---------SCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             ---------CCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence                     013457889999865554 44 4999997 566666665444 578999999999888886543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.20  E-value=3.3e-11  Score=106.81  Aligned_cols=201  Identities=11%  Similarity=0.084  Sum_probs=108.7

Q ss_pred             CcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCceee-eecCC-ccEE-EE
Q psy11885         28 NQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETV-IGTHD-QPIR-AV  103 (327)
Q Consensus        28 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~~-~~~h~-~~V~-~l  103 (327)
                      +..+++++.|+.|+.||..+|++.-.... +++.+..+ .++..+++++.|+.|+.||.++++... ...+. ..+. +.
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp   87 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP   87 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence            35788999999999999999987654444 45544433 455577777899999999997765432 22111 1110 00


Q ss_pred             EEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeee
Q psy11885        104 EYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQT  183 (327)
Q Consensus       104 ~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~  183 (327)
                      .+. ++..+++++.|+.|..||.++|+.++.+..+.. ...++.+..+++++.++.|+.||.++++......        
T Consensus        88 ~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--------  157 (369)
T 2hz6_A           88 CRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT--------  157 (369)
T ss_dssp             CC------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEE--------
T ss_pred             eEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-ccccccCCEEEEEecCCEEEEEECCCCCEEEeEe--------
Confidence            111 345788888999999999999998877765432 2234467788888889999999988765221100        


Q ss_pred             EEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC---CeEEEecCCCeEE
Q psy11885        184 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY---NTFATGGSDGYVN  260 (327)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~---~~lasgs~dg~i~  260 (327)
                          .         ..         +                             ...++.++.   ..+++++.||.|+
T Consensus       158 ----~---------~~---------~-----------------------------~~~~~~~~~~~~~~v~~~~~dg~v~  186 (369)
T 2hz6_A          158 ----Y---------FD---------Y-----------------------------AASLPEDDVDYKMSHFVSNGDGLVV  186 (369)
T ss_dssp             ----E---------EE---------E-----------------------------CCBCCCCCTTCCCCEEEEETSCEEE
T ss_pred             ----c---------cc---------c-----------------------------cCccccCCccccceEEEECCCCEEE
Confidence                0         00         0                             001111211   3566788899999


Q ss_pred             EEeCCCceeeeecCcCCcce-EEEEECCCCCE
Q psy11885        261 IWDGFNKKRLCQFHRYDTGI-TSLCFSYDGNV  291 (327)
Q Consensus       261 iWd~~~~~~~~~~~~~~~~v-~~l~fspdg~~  291 (327)
                      .||..+++.+.+.. ...++ ...++++||..
T Consensus       187 a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          187 TVDSESGDVLWIQN-YASPVVAFYVWQREGLR  217 (369)
T ss_dssp             EECTTTCCEEEEEE-CSSCEEEEEECTTSSCE
T ss_pred             EEECCCCcEEEEec-CCCceEEEEEecCCceE
Confidence            99999998877765 33454 44578888864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.18  E-value=8.7e-09  Score=87.96  Aligned_cols=198  Identities=9%  Similarity=-0.123  Sum_probs=113.1

Q ss_pred             cCCCceeeEEEe-CCc-eEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee
Q psy11885         55 AHSDPVLDCCFQ-DAV-HSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV  132 (327)
Q Consensus        55 ~h~~~v~~~~~~-~~~-~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~  132 (327)
                      .+.....+++|. ++. .++++..++.|..||.+++ ...+..+...+.+++++++|+++++...++.|.+||.++++..
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            333445677885 555 5678888999999999887 5555566778899999999998777777799999999877653


Q ss_pred             eeeeC-C------CcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEE
Q psy11885        133 GNYTQ-P------DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAA  205 (327)
Q Consensus       133 ~~~~~-~------~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (327)
                      ..... .      ...+.+++.|..+++.+..++...++...       ....                      .+...
T Consensus       104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~-------~~~~----------------------~~~~~  154 (296)
T 3e5z_A          104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG-------GEME----------------------LPGRW  154 (296)
T ss_dssp             EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC-------CCCC----------------------SSSCE
T ss_pred             EEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc-------cccc----------------------CCCcE
Confidence            32211 0      01234444454444311100000000000       0000                      00001


Q ss_pred             EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC-Ccee---eeecCcCCcceE
Q psy11885        206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF-NKKR---LCQFHRYDTGIT  281 (327)
Q Consensus       206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~-~~~~---~~~~~~~~~~v~  281 (327)
                      ++.++....   ... +..+         ....+.++|+|+++.|++.+.++.|++|++. +++.   ...+..+...+.
T Consensus       155 l~~~~~~g~---~~~-~~~~---------~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~  221 (296)
T 3e5z_A          155 VFRLAPDGT---LSA-PIRD---------RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTD  221 (296)
T ss_dssp             EEEECTTSC---EEE-EECC---------CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCC
T ss_pred             EEEECCCCC---EEE-eecC---------CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCC
Confidence            111211100   000 0000         0124679999999999888888999999986 4433   222222334467


Q ss_pred             EEEECCCCCEEEEE
Q psy11885        282 SLCFSYDGNVLAIA  295 (327)
Q Consensus       282 ~l~fspdg~~la~~  295 (327)
                      .++|+++|+++++.
T Consensus       222 ~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          222 GLRVDAGGLIWASA  235 (296)
T ss_dssp             SEEEBTTSCEEEEE
T ss_pred             eEEECCCCCEEEEc
Confidence            89999999977766

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.13  E-value=1.5e-09  Score=95.94  Aligned_cols=146  Identities=13%  Similarity=0.212  Sum_probs=107.3

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-----------EEEEecCCCceeeEEEeCCceEEEEecCCcEEE
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-----------LRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKM   82 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~v   82 (327)
                      +...++.+++++. ..++++|+.+ .+.+|++...+           ......+.. |..++| ++..++.+ .++.|++
T Consensus        36 ~~~~~nlLais~~-~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           36 PFASLQNLDISNS-KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             CSSCCBCEEEETT-TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-ETTEEEEE-ESSEEEE
T ss_pred             CcccccEEEEcCC-CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-CCCEEEEE-cCCcEEE
Confidence            3457999999995 5688888877 45669864322           112345666 999999 88888888 8999999


Q ss_pred             EEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEE
Q psy11885         83 FDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVC  161 (327)
Q Consensus        83 wd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  161 (327)
                      ||+.+... .....|+.++.++.+.+.  .+++++.||.|.+||+.++.... +..  .+.+++++++.++.|..||+++
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~~--~Vs~v~WSpkG~~vg~~dg~i~  185 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LAQ--NVTSFDVTNSQLAVLLKDRSFQ  185 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EEE--SEEEEEECSSEEEEEETTSCEE
T ss_pred             EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-ccC--CceEEEEcCCceEEEEcCCcEE
Confidence            99876543 345567778888777653  39999999999999999876643 222  3445555555588999999999


Q ss_pred             EEECCCCc
Q psy11885        162 IWDLRNMG  169 (327)
Q Consensus       162 iwD~~~~~  169 (327)
                      +|+.....
T Consensus       186 ~~~~~~~~  193 (388)
T 1xip_A          186 SFAWRNGE  193 (388)
T ss_dssp             EEEEETTE
T ss_pred             EEcCCCcc
Confidence            99877654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.12  E-value=4.1e-09  Score=89.40  Aligned_cols=175  Identities=13%  Similarity=0.065  Sum_probs=119.2

Q ss_pred             CCceEEEEecCCcEEEEEcCCCcee-eeecCC-ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC--cE-
Q psy11885         67 DAVHSFSGGLDCTLKMFDFNTQTET-VIGTHD-QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD--KV-  141 (327)
Q Consensus        67 ~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~-~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~--~~-  141 (327)
                      +++.+++++.|+.|.+||.++++.. .+..+. ..+.++.++|+|+.++  +.++.|..||. +++.++.+..+.  .+ 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            5678889999999999999777654 344444 4678899999999888  46889999998 899888887642  23 


Q ss_pred             -EEEecCCCeEEEEeC-CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccce
Q psy11885        142 -FTMSLCGEKFVVGTA-GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK  219 (327)
Q Consensus       142 -~~~~~~~~~~~~~~~-d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  219 (327)
                       ....++|+.+++.+. ++.|..+|.. ++.+..            .            .         ...... .   
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~------------~------------~---------~~~~~~-~---  122 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNMK-GEVLSK------------T------------E---------FETGIE-R---  122 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECTT-SCEEEE------------E------------E---------ECCSCS-S---
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEE------------E------------e---------ccCCCC-c---
Confidence             234566777777666 5666666642 221100            0            0         000000 0   


Q ss_pred             eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                          .|.          +...+++.++|.++++.+.++.|..||.. |+.+.++... ....++.+.|+|++|++++..
T Consensus       123 ----~~~----------~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          123 ----PHA----------QFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             ----GGG----------SCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTT
T ss_pred             ----ccc----------cccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCC
Confidence                000          12345678999999999999999999987 8888877543 345677888888888776543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.11  E-value=1.4e-08  Score=85.17  Aligned_cols=195  Identities=10%  Similarity=0.014  Sum_probs=125.1

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI   93 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~   93 (327)
                      ..+.++++++++ .++++.. ++.|.+||..++...... .....+..+++. ++...++...++.|.+|+..+......
T Consensus        67 ~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           67 YQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             CSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred             CCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence            568899999964 5555544 889999998776543322 222457788885 565555666678999997655433222


Q ss_pred             -ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCCeEEEEeCCCeEEEEECCCCc
Q psy11885         94 -GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMG  169 (327)
Q Consensus        94 -~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~  169 (327)
                       ......+..++++++++.+++...++.|.+||............. ...  ++++..|..+++...++.|.+||..+..
T Consensus       145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence             222345688999999987777777889999998776543321111 223  3445556445555557788888875321


Q ss_pred             cceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe
Q psy11885        170 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT  249 (327)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~  249 (327)
                      ..                .                    ... ..                    ...+.+++++|+|+.
T Consensus       225 ~~----------------~--------------------~~~-~~--------------------~~~p~~i~~~~~g~l  247 (270)
T 1rwi_B          225 ST----------------V--------------------LPF-TG--------------------LNTPLAVAVDSDRTV  247 (270)
T ss_dssp             CE----------------E--------------------CCC-CS--------------------CSCEEEEEECTTCCE
T ss_pred             ce----------------e--------------------ecc-CC--------------------CCCceeEEECCCCCE
Confidence            00                0                    000 00                    002457899999998


Q ss_pred             EEEecCCCeEEEEeCCCcee
Q psy11885        250 FATGGSDGYVNIWDGFNKKR  269 (327)
Q Consensus       250 lasgs~dg~i~iWd~~~~~~  269 (327)
                      +++...++.|++++....++
T Consensus       248 ~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          248 YVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EEEEGGGTEEEEECCCGGGS
T ss_pred             EEEECCCCEEEEEcCCCccc
Confidence            89988999999999876544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.09  E-value=2.1e-08  Score=96.37  Aligned_cols=110  Identities=10%  Similarity=0.051  Sum_probs=75.4

Q ss_pred             CceeeEEEe-CCceEEEEecCC-----cEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCe-----------
Q psy11885         58 DPVLDCCFQ-DAVHSFSGGLDC-----TLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTS-----------  120 (327)
Q Consensus        58 ~~v~~~~~~-~~~~~~sgs~Dg-----~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~-----------  120 (327)
                      ..+...+|+ ++.+++.++.++     .|++||+.++...........+..++|+|||+.|+.++.++.           
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~  204 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence            356778885 777777554433     899999998865432222223667999999999999988876           


Q ss_pred             -----EEEEeCCCCcee--eeeeC---CC--cEEEEecCCCeEEEEeC-----CCeEEEEECCC
Q psy11885        121 -----VKMWDPRSSRCV--GNYTQ---PD--KVFTMSLCGEKFVVGTA-----GRKVCIWDLRN  167 (327)
Q Consensus       121 -----i~lwdl~~~~~~--~~~~~---~~--~~~~~~~~~~~~~~~~~-----d~~v~iwD~~~  167 (327)
                           |++|++.+++..  ..+..   +.  ....++++|+.++..+.     +..|.+||+.+
T Consensus       205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence                 999999887632  11222   22  23567788888877654     56788888764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.07  E-value=9e-08  Score=79.20  Aligned_cols=192  Identities=11%  Similarity=0.110  Sum_probs=123.3

Q ss_pred             EEEEecCCCce--eeEEEeCCceEEEEecCC--cEEEEEcCCCceeeeecCCccE--EEEEEeCCCCEEEEEE-CCCeEE
Q psy11885         50 LRLKYAHSDPV--LDCCFQDAVHSFSGGLDC--TLKMFDFNTQTETVIGTHDQPI--RAVEYSDEVNCILTGS-WDTSVK  122 (327)
Q Consensus        50 ~~~~~~h~~~v--~~~~~~~~~~~~sgs~Dg--~i~vwd~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~sgs-~d~~i~  122 (327)
                      +...+.|...-  ..+.|.++....|++.+|  .|+++|+++++......-....  ..++.  +++.|+... .++.+.
T Consensus        33 vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEE
T ss_pred             EEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEE
Confidence            34456676543  677888665555777776  8999999988753211111222  33444  345666554 488999


Q ss_pred             EEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecC
Q psy11885        123 MWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG  202 (327)
Q Consensus       123 lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (327)
                      ++|.++.+.+.++..+..-..++.+++.++.+..++.|.++|..+++...            .+..-.          + 
T Consensus       111 v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~------------~I~V~~----------~-  167 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVR------------TITVTA----------H-  167 (262)
T ss_dssp             EEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEE------------EEECEE----------T-
T ss_pred             EEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEE------------EEEecc----------C-
Confidence            99999999999988765556667778888777667889999988754211            000000          0 


Q ss_pred             eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcC------
Q psy11885        203 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY------  276 (327)
Q Consensus       203 ~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~------  276 (327)
                               +..                    ...++.+.|. +|+.+|..-.+..|.+.|..+++.+..+...      
T Consensus       168 ---------g~~--------------------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~  217 (262)
T 3nol_A          168 ---------GEE--------------------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEA  217 (262)
T ss_dssp             ---------TEE--------------------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGS
T ss_pred             ---------Ccc--------------------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccc
Confidence                     000                    0013345554 6666666666788999999998877665321      


Q ss_pred             ------CcceEEEEECCCCCEEEEEE
Q psy11885        277 ------DTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       277 ------~~~v~~l~fspdg~~la~~~  296 (327)
                            ....+.|||+|+++.|.+++
T Consensus       218 ~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          218 GPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ccccCcCCceEEEEEcCCCCEEEEEC
Confidence                  12458899999988777776

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.07  E-value=8e-07  Score=78.58  Aligned_cols=236  Identities=9%  Similarity=-0.058  Sum_probs=135.7

Q ss_pred             EEEEecCCCcEEEEEE----------CCCcEEEEECCCCeEEEEecC--------CCceeeEEEe-CCceEEEEec--CC
Q psy11885         20 AVKFAPNSNQFLLASS----------WDCNVSLYDITNNNLRLKYAH--------SDPVLDCCFQ-DAVHSFSGGL--DC   78 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~h--------~~~v~~~~~~-~~~~~~sgs~--Dg   78 (327)
                      .++|+|++ ++|+++.          .++.|.+||..+.+......-        ......++++ ++.+++.++.  ++
T Consensus        70 ~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             CeEECCCC-CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCC
Confidence            89999965 5666554          367899999988765433211        1123466774 8888988764  57


Q ss_pred             cEEEEEcCCCceeee-ecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeeee------CCCcE---EEEecC
Q psy11885         79 TLKMFDFNTQTETVI-GTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNYT------QPDKV---FTMSLC  147 (327)
Q Consensus        79 ~i~vwd~~~~~~~~~-~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~------~~~~~---~~~~~~  147 (327)
                      .|.++| .+++.... ......   +.+.+++ +.+++.+.||++..+|. +++......      ....+   ..+...
T Consensus       149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            899999 87765322 222222   3344544 45667788999999999 777653321      11111   122333


Q ss_pred             CCeEEEEeCCCeEEEEECCCCccc-eeeec--c----c---ceeeeEEeEEeeCCCceEEEeec--------CeEEEEEc
Q psy11885        148 GEKFVVGTAGRKVCIWDLRNMGYI-MQRRE--S----S---LKFQTRCIKCFPNKQGYVLSSIE--------GRAAVEYL  209 (327)
Q Consensus       148 ~~~~~~~~~d~~v~iwD~~~~~~~-~~~~~--~----~---~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~  209 (327)
                      +..++..+.++.|.+.|+.+.... .....  .    .   .+.....+.++++++.+.++...        ....|+.+
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence            445555557788999998654211 01000  0    0   01111224566665555544321        12234445


Q ss_pred             cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC-eEEEec-CCCeEEEEeCCCceeeeec
Q psy11885        210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGG-SDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~-~lasgs-~dg~i~iWd~~~~~~~~~~  273 (327)
                      |.....  +...+..        +  .....++|+|||+ .++++. .++.|.+||..+++.+..+
T Consensus       304 D~~t~~--vv~~i~~--------g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          304 TGLVGQ--TSSQISL--------G--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             ECCCCE--EEEEEEC--------C--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            543211  1111110        0  1257899999999 777776 4899999999999988773

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.05  E-value=6.6e-07  Score=75.76  Aligned_cols=219  Identities=5%  Similarity=-0.046  Sum_probs=129.0

Q ss_pred             CceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee--ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee
Q psy11885         58 DPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI--GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN  134 (327)
Q Consensus        58 ~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~  134 (327)
                      ..+.++++. ++...++...++.|.+||.. +....+  ..+...+..+++++++...++...++.|..||.. ++. ..
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~   91 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KE   91 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EE
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EE
Confidence            456777774 55544555557899999987 444332  2345678999999999887777778999999986 332 22


Q ss_pred             eeC---CCcE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEc
Q psy11885        135 YTQ---PDKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYL  209 (327)
Q Consensus       135 ~~~---~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  209 (327)
                      +..   ....  +.+.+++..+++...++.|.+||. +++......... ...+..+.+.+++..+++....+.+  ..+
T Consensus        92 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i--~~~  167 (299)
T 2z2n_A           92 YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK-GSYPSFITLGSDNALWFTENQNNAI--GRI  167 (299)
T ss_dssp             EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTSCEEEEETTTTEE--EEE
T ss_pred             EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC-CCCCceEEEcCCCCEEEEeCCCCEE--EEE
Confidence            221   1223  334445655555566789999998 333211111111 1123555555555444433323333  334


Q ss_pred             cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee-cCcCCcceEEEEECCC
Q psy11885        210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYD  288 (327)
Q Consensus       210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~-~~~~~~~v~~l~fspd  288 (327)
                      +......  .....     . .   ...+..+++++++..+++...++.|.+||. +++.... .......+.+++++|+
T Consensus       168 ~~~g~~~--~~~~~-----~-~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          168 TESGDIT--EFKIP-----T-P---ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAG  235 (299)
T ss_dssp             CTTCCEE--EEECS-----S-T---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred             cCCCcEE--EeeCC-----C-C---CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCC
Confidence            4311110  00000     0 0   013568999999998888777899999998 6553322 2333456889999999


Q ss_pred             CCEEEEE
Q psy11885        289 GNVLAIA  295 (327)
Q Consensus       289 g~~la~~  295 (327)
                      |+++++.
T Consensus       236 g~l~v~~  242 (299)
T 2z2n_A          236 IDLWFTE  242 (299)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEec
Confidence            9976654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.05  E-value=1.3e-08  Score=89.60  Aligned_cols=259  Identities=7%  Similarity=-0.074  Sum_probs=143.4

Q ss_pred             cEEEEEECCC----cEEEEECCCCeEEEEec-CCCceeeEEEe-CCceEEEEe----------cCCcEEEEEcCCCcee-
Q psy11885         29 QFLLASSWDC----NVSLYDITNNNLRLKYA-HSDPVLDCCFQ-DAVHSFSGG----------LDCTLKMFDFNTQTET-   91 (327)
Q Consensus        29 ~~l~s~~~d~----~i~iwd~~~~~~~~~~~-h~~~v~~~~~~-~~~~~~sgs----------~Dg~i~vwd~~~~~~~-   91 (327)
                      ..+++...++    +|.+.|..+++...... ...+  .+.++ ++.+++.+.          .+++|.+||..+.+.. 
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            4444444455    88899999999655443 2234  68885 788888775          3789999999987653 


Q ss_pred             eeecC-------CccEEEEEEeCCCCEEEEEEC--CCeEEE--EeCCCCceeeeeeCCCcEEEEecCCC-eEEEEeCCCe
Q psy11885         92 VIGTH-------DQPIRAVEYSDEVNCILTGSW--DTSVKM--WDPRSSRCVGNYTQPDKVFTMSLCGE-KFVVGTAGRK  159 (327)
Q Consensus        92 ~~~~h-------~~~V~~l~~~~~~~~l~sgs~--d~~i~l--wdl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~  159 (327)
                      .+...       ......+.++|||++++.+..  +..|.+  +|+.+   +..+..+.. ..+.+.+. .+++.+.|++
T Consensus       111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~~~~p~g~~~~~~~~~dg~  186 (368)
T 1mda_H          111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-FHIHPGAAATHYLGSCPAS  186 (368)
T ss_dssp             EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-CCCEEEETTEEECCCCTTS
T ss_pred             EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-eEEccCCCeEEEEEcCCCC
Confidence            23211       122457899999999999875  467888  99877   444443322 11233333 3555667888


Q ss_pred             EEEEECCC----CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeE
Q psy11885        160 VCIWDLRN----MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI  235 (327)
Q Consensus       160 v~iwD~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  235 (327)
                      +.+.|+.+    ...+................ .+++..++..+. +.+.+...............+..-.....+. .-
T Consensus       187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~-~p  263 (368)
T 1mda_H          187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNF-RS  263 (368)
T ss_dssp             CEEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTE-EE
T ss_pred             EEEEECccccccCCeEEEEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccc-cc
Confidence            88888876    22111100000000000011 344444444443 4444322221110000000000000000000 00


Q ss_pred             EEeeEEEEecCCCeEEEecC---------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        236 YPVNAISFHQEYNTFATGGS---------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       236 ~~v~~v~~spd~~~lasgs~---------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      .....++|+||++.+.++..         ++.+.++|..+++.+..+.... ..+.|+|+|||+++++++.
T Consensus       264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~  333 (368)
T 1mda_H          264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEE
T ss_pred             CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEcc
Confidence            01123789999998876532         2355699999999888876443 5689999999996666654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.03  E-value=1e-06  Score=78.56  Aligned_cols=228  Identities=14%  Similarity=0.110  Sum_probs=132.7

Q ss_pred             CCceE-EEEecCCcEEEEEcCCC--cee---eee------cCC-ccEEEEEEeCCCCEEEEEECC------CeEEEEeCC
Q psy11885         67 DAVHS-FSGGLDCTLKMFDFNTQ--TET---VIG------THD-QPIRAVEYSDEVNCILTGSWD------TSVKMWDPR  127 (327)
Q Consensus        67 ~~~~~-~sgs~Dg~i~vwd~~~~--~~~---~~~------~h~-~~V~~l~~~~~~~~l~sgs~d------~~i~lwdl~  127 (327)
                      ++.++ ++|-.+++|.++|+.+.  +..   .+.      ... ..-..+...|+| .++++..+      +.|.++|.+
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence            34455 47777899999998754  222   221      111 133456677999 66666555      789999999


Q ss_pred             CCceeeeeeCC-C---cE--EEEecCCCeEEEEe-------------------CCCeEEEEECCCCccceeeecccceee
Q psy11885        128 SSRCVGNYTQP-D---KV--FTMSLCGEKFVVGT-------------------AGRKVCIWDLRNMGYIMQRRESSLKFQ  182 (327)
Q Consensus       128 ~~~~~~~~~~~-~---~~--~~~~~~~~~~~~~~-------------------~d~~v~iwD~~~~~~~~~~~~~~~~~~  182 (327)
                      +++.+.++... .   ..  +.+++.++.+++..                   .+++|.+||+.+.+.............
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~  252 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM  252 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred             CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence            99998887632 1   12  44577788777764                   368999999987643322222111122


Q ss_pred             eEEeEE--eeCCCceEE-Ee-----ecCeEEEEEccCCcccccce-eeeeeeeecc------CCeee-EEEeeEEEEecC
Q psy11885        183 TRCIKC--FPNKQGYVL-SS-----IEGRAAVEYLDTGPEMQKMK-YAFKCHRIKE------DGIEK-IYPVNAISFHQE  246 (327)
Q Consensus       183 ~~~~~~--~~~~~~~~~-~~-----~~~~~~i~~~~~~~~~~~~~-~~~~~h~~~~------~~~~~-~~~v~~v~~spd  246 (327)
                      ++.+++  +|++....+ ..     .++.+.++.++.+. +.... ..+.......      .+... ......|.+|||
T Consensus       253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            345555  666654444 33     45556655555321 11111 0011110000      00000 013568999999


Q ss_pred             CCeEEEecC-CCeEEEEeCCC---ceeeeecCcC-----------C---cceEEEEECCCCCEEEEEE
Q psy11885        247 YNTFATGGS-DGYVNIWDGFN---KKRLCQFHRY-----------D---TGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       247 ~~~lasgs~-dg~i~iWd~~~---~~~~~~~~~~-----------~---~~v~~l~fspdg~~la~~~  296 (327)
                      |++|.++.. .+.|.++|+.+   .+.+.++.-.           .   ..-..+++||||++|.++.
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999876655 58999999853   3444444221           0   0236799999999999886

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.02  E-value=5.9e-07  Score=80.46  Aligned_cols=250  Identities=12%  Similarity=0.020  Sum_probs=145.4

Q ss_pred             EEEEecCCCcEEEEEE----------CCCcEEEEECCCCeEEEEecC--------CCceeeEEEe-CCceEEEEec--CC
Q psy11885         20 AVKFAPNSNQFLLASS----------WDCNVSLYDITNNNLRLKYAH--------SDPVLDCCFQ-DAVHSFSGGL--DC   78 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~h--------~~~v~~~~~~-~~~~~~sgs~--Dg   78 (327)
                      .++|+|++. +|+++.          .++.|.++|..+++......-        ......++|+ ++.+++.+..  ++
T Consensus       122 gia~SpDgk-~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~  200 (426)
T 3c75_H          122 HPVAAEDGS-FFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP  200 (426)
T ss_dssp             EEEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC
T ss_pred             ceEECCCCC-EEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC
Confidence            799999764 444443          467999999999886443321        1234467784 7888888764  57


Q ss_pred             cEEEEEcCCCcee-eeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeee----eeCCC----cEEEEecCC
Q psy11885         79 TLKMFDFNTQTET-VIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGN----YTQPD----KVFTMSLCG  148 (327)
Q Consensus        79 ~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~----~~~~~----~~~~~~~~~  148 (327)
                      +|.+.|+.+.+.. .+.. ...   ....|++ ..+++.+.||++...++.+++....    +....    ....+...+
T Consensus       201 ~VsVID~~t~kvv~~I~v-~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg  276 (426)
T 3c75_H          201 AVGVVDLEGKTFDRMLDV-PDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS  276 (426)
T ss_dssp             EEEEEETTTTEEEEEEEC-CSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred             eEEEEECCCCeEEEEEEc-CCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence            8999999887643 2221 111   1222332 5566667788877777755554321    11111    112446667


Q ss_pred             CeEEEEeCCCeEEEEECCCCccceeee-c----c--cc---eeeeEEeEEeeCCCceEEEeec--------CeEEEEEcc
Q psy11885        149 EKFVVGTAGRKVCIWDLRNMGYIMQRR-E----S--SL---KFQTRCIKCFPNKQGYVLSSIE--------GRAAVEYLD  210 (327)
Q Consensus       149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~-~----~--~~---~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~  210 (327)
                      ..++..+..+.|.+.|+.......... .    .  ..   +.....+.++++++.+.+....        +...+..+|
T Consensus       277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID  356 (426)
T 3c75_H          277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN  356 (426)
T ss_dssp             CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence            777777788899999986543110000 0    0  00   1111125667776655554321        233455555


Q ss_pred             CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC-eEEEec-CCCeEEEEeCCCceeeeec-CcCCcceEEEEECC
Q psy11885        211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGG-SDGYVNIWDGFNKKRLCQF-HRYDTGITSLCFSY  287 (327)
Q Consensus       211 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~-~lasgs-~dg~i~iWd~~~~~~~~~~-~~~~~~v~~l~fsp  287 (327)
                      .....  +...+..          -...+.++|+||++ .+++.. .++.|.++|..+++.+.++ .....+  .+..+|
T Consensus       357 ~~T~k--vv~~I~v----------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P--~~i~~~  422 (426)
T 3c75_H          357 AETGE--RINKIEL----------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGP--QIITTH  422 (426)
T ss_dssp             TTTCC--EEEEEEE----------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSC--CEEECC
T ss_pred             CCCCe--EEEEEEC----------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCC--cEEEcC
Confidence            43321  1111110          01367899999999 777776 5899999999999998886 322333  266666


Q ss_pred             C
Q psy11885        288 D  288 (327)
Q Consensus       288 d  288 (327)
                      |
T Consensus       423 ~  423 (426)
T 3c75_H          423 D  423 (426)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.97  E-value=2.6e-07  Score=76.54  Aligned_cols=192  Identities=8%  Similarity=0.050  Sum_probs=123.5

Q ss_pred             EEEEecCCCc--eeeEEEeCCceEEEEecCCcEEEEEcCCCceee-eecCCccEEEEEEeCCCCEEE-EEECCCeEEEEe
Q psy11885         50 LRLKYAHSDP--VLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETV-IGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWD  125 (327)
Q Consensus        50 ~~~~~~h~~~--v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~-sgs~d~~i~lwd  125 (327)
                      +...+.|...  ...+.|.++....+++.+|.|+++|+++++... +......-..+++.  ++.|+ ....++.+.+||
T Consensus        45 Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             EEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEE
T ss_pred             EEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEE
Confidence            4445566543  357788776666788989999999999886432 21111122335543  34444 445689999999


Q ss_pred             CCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEE
Q psy11885        126 PRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAA  205 (327)
Q Consensus       126 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (327)
                      .++.+.+.++..+..-..++.++..++.+..++.|.++|..+++...            .+.....          +   
T Consensus       123 ~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~------------~I~V~~~----------g---  177 (268)
T 3nok_A          123 GMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVG------------AVQVKLR----------G---  177 (268)
T ss_dssp             TTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEE------------EEECEET----------T---
T ss_pred             CCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEE------------EEEeCCC----------C---
Confidence            99999999988765556667778888887778899999988764211            0100000          0   


Q ss_pred             EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc----------
Q psy11885        206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR----------  275 (327)
Q Consensus       206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~----------  275 (327)
                             ..                    ...++.+.|. +|+.+|..-.+..|.+.|..+++.+..+.-          
T Consensus       178 -------~~--------------------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~  229 (268)
T 3nok_A          178 -------QP--------------------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQ  229 (268)
T ss_dssp             -------EE--------------------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTT
T ss_pred             -------cc--------------------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccc
Confidence                   00                    0013445555 666666666678899999999887766531          


Q ss_pred             ---CCcceEEEEECCCCCEEEEEE
Q psy11885        276 ---YDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       276 ---~~~~v~~l~fspdg~~la~~~  296 (327)
                         .....+.|||+|+++.|.+++
T Consensus       230 ~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          230 VTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             ccCcCCceEEEEEcCCCCEEEEeC
Confidence               112468899999866665554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.95  E-value=1.1e-06  Score=72.14  Aligned_cols=192  Identities=10%  Similarity=0.076  Sum_probs=121.1

Q ss_pred             EEEEecCCCc--eeeEEEeCCceEEEEecCC--cEEEEEcCCCceeeeecCCccE--EEEEEeCCCCEEEEE-ECCCeEE
Q psy11885         50 LRLKYAHSDP--VLDCCFQDAVHSFSGGLDC--TLKMFDFNTQTETVIGTHDQPI--RAVEYSDEVNCILTG-SWDTSVK  122 (327)
Q Consensus        50 ~~~~~~h~~~--v~~~~~~~~~~~~sgs~Dg--~i~vwd~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~sg-s~d~~i~  122 (327)
                      +...+.|+..  ...+.|.++....|++.+|  .|+.+|+.+++......-....  ..++..  ++.|+.. ..++.+.
T Consensus        11 v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEE
T ss_pred             EEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEE
Confidence            4455677543  4578888765556777754  8999999988754211111112  234443  4555544 5689999


Q ss_pred             EEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecC
Q psy11885        123 MWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG  202 (327)
Q Consensus       123 lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (327)
                      ++|.++.+.+.++..+..-..+..++..++++..++.|.++|..+++...            .+....+           
T Consensus        89 v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~------------~I~V~~~-----------  145 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVG------------SIKVTAG-----------  145 (243)
T ss_dssp             EEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEE------------EEECEET-----------
T ss_pred             EEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEE------------EEEEccC-----------
Confidence            99999999999988766656777778888887778899999988764211            1100000           


Q ss_pred             eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc-------
Q psy11885        203 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-------  275 (327)
Q Consensus       203 ~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~-------  275 (327)
                               +...                    ..++.+.+. +|+.+|..-.+..|.+.|..+++.+..+.-       
T Consensus       146 ---------g~~~--------------------~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~  195 (243)
T 3mbr_X          146 ---------GRPL--------------------DNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDA  195 (243)
T ss_dssp             ---------TEEC--------------------CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTT
T ss_pred             ---------Cccc--------------------ccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccc
Confidence                     0000                    012334443 565565555677888888888887765421       


Q ss_pred             ------CCcceEEEEECCCCCEEEEEE
Q psy11885        276 ------YDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       276 ------~~~~v~~l~fspdg~~la~~~  296 (327)
                            .....+.|||+|+++.|.+++
T Consensus       196 ~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          196 DALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             ccccCCcCCceEEEEEcCCCCEEEEEC
Confidence                  112468899999877766665

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.94  E-value=2.8e-07  Score=81.35  Aligned_cols=225  Identities=11%  Similarity=0.042  Sum_probs=131.3

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecCCccE------EE
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPI------RA  102 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V------~~  102 (327)
                      ..+++++.++.|..+|..+++..-.......+.+.....+..++.++.++.|..+|..+++.........++      ..
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~  183 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESA  183 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCC
Confidence            457778889999999999998654443333332211123457888888999999999887754322222221      11


Q ss_pred             EEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE------------EEEecCCCeEEEEeCCCeEEEEECCCCcc
Q psy11885        103 VEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV------------FTMSLCGEKFVVGTAGRKVCIWDLRNMGY  170 (327)
Q Consensus       103 l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~d~~v~iwD~~~~~~  170 (327)
                      ....  +..++.++.++.|..+|.++++.++........            ......+..+++++.++.+..+|.++++.
T Consensus       184 ~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~  261 (376)
T 3q7m_A          184 PTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI  261 (376)
T ss_dssp             CEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE
T ss_pred             cEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE
Confidence            1222  357888888999999999999988776532110            00112356788888899999999988764


Q ss_pred             ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeE
Q psy11885        171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF  250 (327)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~l  250 (327)
                      ........    ...  ....+..+.+++.++........++..    .+....  ....      .+.....  .+..|
T Consensus       262 ~w~~~~~~----~~~--~~~~~~~l~~~~~~g~l~~~d~~tG~~----~w~~~~--~~~~------~~~~~~~--~~~~l  321 (376)
T 3q7m_A          262 MWKRELGS----VND--FIVDGNRIYLVDQNDRVMALTIDGGVT----LWTQSD--LLHR------LLTSPVL--YNGNL  321 (376)
T ss_dssp             EEEECCCC----EEE--EEEETTEEEEEETTCCEEEEETTTCCE----EEEECT--TTTS------CCCCCEE--ETTEE
T ss_pred             EeeccCCC----CCC--ceEECCEEEEEcCCCeEEEEECCCCcE----EEeecc--cCCC------cccCCEE--ECCEE
Confidence            42221111    111  112334455555555544433333221    111100  0000      0111111  24678


Q ss_pred             EEecCCCeEEEEeCCCceeeeecCc
Q psy11885        251 ATGGSDGYVNIWDGFNKKRLCQFHR  275 (327)
Q Consensus       251 asgs~dg~i~iWd~~~~~~~~~~~~  275 (327)
                      ..++.+|.+..+|..+++.+.....
T Consensus       322 ~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          322 VVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEec
Confidence            8888999999999999988766543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.93  E-value=1.4e-06  Score=76.94  Aligned_cols=227  Identities=10%  Similarity=-0.026  Sum_probs=129.5

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecC----------CCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecCCc
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAH----------SDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQ   98 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~   98 (327)
                      ..+.+++.++.|..+|..+++..-....          ...+.+.....+..++.++.++.|..+|..+++.........
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~  133 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG  133 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC
Confidence            3577778899999999998886543332          122322222356788888899999999998887643221111


Q ss_pred             cE-EEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEE------EEecCCCeEEEEeCCCeEEEEECCCCccc
Q psy11885         99 PI-RAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVF------TMSLCGEKFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus        99 ~V-~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      .+ ......  +..++.++.++.|..+|.++++.++.+.......      .....+..+++++.++.|..+|.++++..
T Consensus       134 ~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~  211 (376)
T 3q7m_A          134 EALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMI  211 (376)
T ss_dssp             CCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEE
T ss_pred             ceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEE
Confidence            11 111222  3578888999999999999999888776543221      11122567888888999999999887654


Q ss_pred             eeeecccceee--eEE---e--EEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        172 MQRRESSLKFQ--TRC---I--KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       172 ~~~~~~~~~~~--~~~---~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      ...........  ...   +  .....+..+.+++.++.........+..    .+...   .  .      ....+.. 
T Consensus       212 w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~----~w~~~---~--~------~~~~~~~-  275 (376)
T 3q7m_A          212 WQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI----MWKRE---L--G------SVNDFIV-  275 (376)
T ss_dssp             EEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE----EEEEC---C--C------CEEEEEE-
T ss_pred             EEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE----Eeecc---C--C------CCCCceE-
Confidence            32211100000  000   0  0001123344444444444322222221    11110   0  0      1112222 


Q ss_pred             cCCCeEEEecCCCeEEEEeCCCceeeeecC
Q psy11885        245 QEYNTFATGGSDGYVNIWDGFNKKRLCQFH  274 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~~~~~~~~~~~  274 (327)
                       ++..+..++.++.+..+|..+++.+....
T Consensus       276 -~~~~l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          276 -DGNRIYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             -ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             -ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence             35677778889999999999998776554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.93  E-value=3.3e-06  Score=71.41  Aligned_cols=219  Identities=7%  Similarity=-0.020  Sum_probs=127.8

Q ss_pred             CceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee--ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee
Q psy11885         58 DPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI--GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN  134 (327)
Q Consensus        58 ~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~  134 (327)
                      ..+.++++. ++...++...++.|.+||.. +....+  ..+...+..++++++++..++...++.|..||.. ++.. .
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~   96 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-E   96 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-E
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-E
Confidence            356677774 45555555567899999987 443322  2334568899999999877776668999999987 5542 2


Q ss_pred             eeC---CCcE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEc
Q psy11885        135 YTQ---PDKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYL  209 (327)
Q Consensus       135 ~~~---~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  209 (327)
                      +..   ....  +.+...+..+++...++.|..+|.. .+..... .......+..+.+.+++..+++....+.+  ..+
T Consensus        97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i--~~~  172 (300)
T 2qc5_A           97 YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQNNSI--GRI  172 (300)
T ss_dssp             EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETTTTEE--EEE
T ss_pred             ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecCCCeE--EEE
Confidence            221   1223  3344456655555557899999987 3322111 11111224556666655533333223333  334


Q ss_pred             cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee-cCcCCcceEEEEECCC
Q psy11885        210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYD  288 (327)
Q Consensus       210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~-~~~~~~~v~~l~fspd  288 (327)
                      +......  ....     .. .   ...+..+++++++..+++...++.|.+||. +++.... +......+.+++++|+
T Consensus       173 ~~~g~~~--~~~~-----~~-~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~  240 (300)
T 2qc5_A          173 TNTGKLE--EYPL-----PT-N---AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKN  240 (300)
T ss_dssp             CTTCCEE--EEEC-----SS-T---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred             CCCCcEE--EeeC-----CC-C---CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCC
Confidence            4321111  1100     00 0   013568999999988887777889999997 4443322 2223345789999999


Q ss_pred             CCEEEEE
Q psy11885        289 GNVLAIA  295 (327)
Q Consensus       289 g~~la~~  295 (327)
                      |+++++.
T Consensus       241 g~l~v~~  247 (300)
T 2qc5_A          241 SEIWFTE  247 (300)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEec
Confidence            9866655

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.91  E-value=1.3e-06  Score=72.96  Aligned_cols=192  Identities=8%  Similarity=0.073  Sum_probs=123.5

Q ss_pred             EEEEecCCCc--eeeEEEeCCceEEEE-ec--CCcEEEEEcCCCceee-e--ecCCccEEEEEEeCCCCEEEEE-ECCCe
Q psy11885         50 LRLKYAHSDP--VLDCCFQDAVHSFSG-GL--DCTLKMFDFNTQTETV-I--GTHDQPIRAVEYSDEVNCILTG-SWDTS  120 (327)
Q Consensus        50 ~~~~~~h~~~--v~~~~~~~~~~~~sg-s~--Dg~i~vwd~~~~~~~~-~--~~h~~~V~~l~~~~~~~~l~sg-s~d~~  120 (327)
                      +...+.|...  ...+.|.+...++.+ +.  +++|++.|+.+++... +  ..+ .....+++.  ++.|+.+ ..++.
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~   87 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTCSE
T ss_pred             EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecCCE
Confidence            3444566543  467888653456544 33  5799999999887532 2  222 222345554  4556555 45789


Q ss_pred             EEEEeCCCCceeeeeeCC-CcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe
Q psy11885        121 VKMWDPRSSRCVGNYTQP-DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS  199 (327)
Q Consensus       121 i~lwdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (327)
                      +.++|..+.+.+.++... ..-..++++++.++++..++.|.++|.++.+..            ..+..         +.
T Consensus        88 v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~------------~~I~V---------g~  146 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLI------------KKHNV---------KY  146 (266)
T ss_dssp             EEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEE------------EEEEC---------EE
T ss_pred             EEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEE------------EEEEE---------CC
Confidence            999999999998888755 444567778888887777889999998775421            00000         00


Q ss_pred             ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcC---
Q psy11885        200 IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY---  276 (327)
Q Consensus       200 ~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~---  276 (327)
                                 ...                    ....++.+.|. ++..++....++.|.+-|..+++.+..+.-.   
T Consensus       147 -----------~~~--------------------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~  194 (266)
T 2iwa_A          147 -----------NGH--------------------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLR  194 (266)
T ss_dssp             -----------TTE--------------------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHH
T ss_pred             -----------CCc--------------------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcc
Confidence                       000                    00014556676 6766666667889999999999887776421   


Q ss_pred             ----------CcceEEEEECCCCCEEEEEEc
Q psy11885        277 ----------DTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       277 ----------~~~v~~l~fspdg~~la~~~~  297 (327)
                                ......|+|+|+++.|..++.
T Consensus       195 ~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk  225 (266)
T 2iwa_A          195 KKLIDEGFRDIDVLNGIAWDQENKRIFVTGK  225 (266)
T ss_dssp             HHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred             cccccccccccCceEEEEEcCCCCEEEEECC
Confidence                      023589999999987777763

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.87  E-value=2.9e-07  Score=80.96  Aligned_cols=245  Identities=9%  Similarity=-0.014  Sum_probs=141.3

Q ss_pred             EEEEecCCCcEEEEEE----------CCCcEEEEECCCCeEEEEec-C-------CCceeeEEEe-CCceEEEEec--CC
Q psy11885         20 AVKFAPNSNQFLLASS----------WDCNVSLYDITNNNLRLKYA-H-------SDPVLDCCFQ-DAVHSFSGGL--DC   78 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~-h-------~~~v~~~~~~-~~~~~~sgs~--Dg   78 (327)
                      .++|+|++. ++.++.          .++.|.+||..+++...... .       ......++++ ++.+++.+..  +.
T Consensus        69 ~i~~spDg~-~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~  147 (368)
T 1mda_H           69 LAVAGHSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             EEEECTTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             ceEECCCCC-EEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence            799999764 455443          37899999999998654432 2       0224567885 7888888764  45


Q ss_pred             cEEE--EEcCCCceeeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCC-----Cceeee----eeCCCcEEEEec
Q psy11885         79 TLKM--FDFNTQTETVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRS-----SRCVGN----YTQPDKVFTMSL  146 (327)
Q Consensus        79 ~i~v--wd~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~-----~~~~~~----~~~~~~~~~~~~  146 (327)
                      .+.+  +|..+  ...+.. ...   +.+.|++ ..+++.+.|+++.+.|+.+     ++....    +........ ..
T Consensus       148 ~v~V~~iD~~t--v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~  220 (368)
T 1mda_H          148 AAGLSVPGASD--DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-AN  220 (368)
T ss_dssp             EEEEEETTTEE--EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ET
T ss_pred             eEEEEEEchhh--ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccc-cc
Confidence            6888  88876  222221 111   1122333 3455667788888888876     443311    111111112 55


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCcc-ceeee-c-------cc-ceeeeEEeEEeeCCCceEEEee-c-C-------eEEEE
Q psy11885        147 CGEKFVVGTAGRKVCIWDLRNMGY-IMQRR-E-------SS-LKFQTRCIKCFPNKQGYVLSSI-E-G-------RAAVE  207 (327)
Q Consensus       147 ~~~~~~~~~~d~~v~iwD~~~~~~-~~~~~-~-------~~-~~~~~~~~~~~~~~~~~~~~~~-~-~-------~~~i~  207 (327)
                      .+..++..+. +.|.+.|+.+... +.... .       .. .+.....+.+.++++.+.++.. . +       ...+.
T Consensus       221 ~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~Vi  299 (368)
T 1mda_H          221 YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV  299 (368)
T ss_dssp             TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred             cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEE
Confidence            5666666666 8999999864321 11100 0       00 0111122567777766665543 2 2       33343


Q ss_pred             EccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe-EEEec-CCCeEEEEeCCCceeeeecCcCCcceEEEEE
Q psy11885        208 YLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT-FATGG-SDGYVNIWDGFNKKRLCQFHRYDTGITSLCF  285 (327)
Q Consensus       208 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~-lasgs-~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f  285 (327)
                      ...+......+.  ..            .....++|+||+++ +++.. .+++|.++|+.+++.+.++..... -+.+++
T Consensus       300 D~~t~~vv~~i~--vg------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~  364 (368)
T 1mda_H          300 TASVGQTSGPIS--NG------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             ESSSCCEEECCE--EE------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             ECCCCeEEEEEE--CC------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEe
Confidence            333332211111  11            13678999999985 55666 589999999999999988875544 367787


Q ss_pred             CCC
Q psy11885        286 SYD  288 (327)
Q Consensus       286 spd  288 (327)
                      .+.
T Consensus       365 ~~~  367 (368)
T 1mda_H          365 QNE  367 (368)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.84  E-value=1.5e-06  Score=74.23  Aligned_cols=149  Identities=7%  Similarity=0.076  Sum_probs=89.6

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE-ecC-----CCceeeEEEe-CCceEEEEecC-----------
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK-YAH-----SDPVLDCCFQ-DAVHSFSGGLD-----------   77 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~h-----~~~v~~~~~~-~~~~~~sgs~D-----------   77 (327)
                      ..+.+++++++++.+++ ++.++.|.+||.. ++.... ...     ...+.++++. ++...++...+           
T Consensus        71 ~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             CCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             CCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence            57899999996244444 4445579999998 765443 221     1246778884 55555555444           


Q ss_pred             ----CcEEEEEcCCCceeeeecCCccEEEEEEe----CCCCEEEEE-ECCCeEEEEeCC-CCce-----eeeeeCC--Cc
Q psy11885         78 ----CTLKMFDFNTQTETVIGTHDQPIRAVEYS----DEVNCILTG-SWDTSVKMWDPR-SSRC-----VGNYTQP--DK  140 (327)
Q Consensus        78 ----g~i~vwd~~~~~~~~~~~h~~~V~~l~~~----~~~~~l~sg-s~d~~i~lwdl~-~~~~-----~~~~~~~--~~  140 (327)
                          +.|..||.+ +....+..+......++++    ++++.++.+ ..++.|.+||++ +++.     ...+...  ..
T Consensus       149 ~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~  227 (314)
T 1pjx_A          149 QEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG  227 (314)
T ss_dssp             SSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred             cCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC
Confidence                456666654 3333333333456889999    998766555 567999999976 3431     1222211  11


Q ss_pred             --EEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885        141 --VFTMSLCGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus       141 --~~~~~~~~~~~~~~~~d~~v~iwD~~~  167 (327)
                        .++++.+|..+++...++.|.+||.++
T Consensus       228 p~~i~~d~~G~l~v~~~~~~~i~~~d~~~  256 (314)
T 1pjx_A          228 ADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             CCceEECCCCCEEEEEcCCCEEEEEcCCC
Confidence              234455566566555677888888753

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.82  E-value=8.4e-07  Score=84.70  Aligned_cols=140  Identities=16%  Similarity=0.094  Sum_probs=90.6

Q ss_pred             EEEEEECCCcEEEEECCCCeEEEEecCCCc-----------e-eeEEEeCCceEEEEecCCcEEEEEcCCCceee-eecC
Q psy11885         30 FLLASSWDCNVSLYDITNNNLRLKYAHSDP-----------V-LDCCFQDAVHSFSGGLDCTLKMFDFNTQTETV-IGTH   96 (327)
Q Consensus        30 ~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~-----------v-~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~-~~~h   96 (327)
                      .|++++.++.|.-+|..+|+.+-.+.....           + ..+++ .+..++.++.|+.+..+|..+++... ...+
T Consensus        79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~  157 (677)
T 1kb0_A           79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWDGRLIALDAATGKEVWHQNTF  157 (677)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEETT
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE-ECCEEEEEcCCCEEEEEECCCCCEEeeecCC
Confidence            566777789999999999997655432211           1 12222 45678888999999999998887643 2222


Q ss_pred             -C----ccEEE-EEEeCCCCEEEEEEC------CCeEEEEeCCCCceeeeeeCCC-------------------------
Q psy11885         97 -D----QPIRA-VEYSDEVNCILTGSW------DTSVKMWDPRSSRCVGNYTQPD-------------------------  139 (327)
Q Consensus        97 -~----~~V~~-l~~~~~~~~l~sgs~------d~~i~lwdl~~~~~~~~~~~~~-------------------------  139 (327)
                       .    ..+.+ ... . +..++.++.      ++.|+.||.++++.++.+....                         
T Consensus       158 ~~~~~~~~~~~~p~v-~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~  235 (677)
T 1kb0_A          158 EGQKGSLTITGAPRV-F-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW  235 (677)
T ss_dssp             TTCCSSCBCCSCCEE-E-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred             cCcCcCcccccCcEE-E-CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCce
Confidence             1    11111 111 1 345555543      7999999999999887765311                         


Q ss_pred             ----------cEEEEecCCCeEEEEeCCC-------------------eEEEEECCCCccce
Q psy11885        140 ----------KVFTMSLCGEKFVVGTAGR-------------------KVCIWDLRNMGYIM  172 (327)
Q Consensus       140 ----------~~~~~~~~~~~~~~~~~d~-------------------~v~iwD~~~~~~~~  172 (327)
                                ....+++.++.+++++.++                   +|..+|.++++..-
T Consensus       236 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W  297 (677)
T 1kb0_A          236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW  297 (677)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred             eEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence                      1234566677788776653                   59999999887543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.78  E-value=7e-06  Score=78.23  Aligned_cols=141  Identities=12%  Similarity=0.126  Sum_probs=92.8

Q ss_pred             EEEEEECCCcEEEEECCCCeEEEEecCC-----Cceee-EEEeCCceEEEEec------CCcEEEEEcCCCceee-eec-
Q psy11885         30 FLLASSWDCNVSLYDITNNNLRLKYAHS-----DPVLD-CCFQDAVHSFSGGL------DCTLKMFDFNTQTETV-IGT-   95 (327)
Q Consensus        30 ~l~s~~~d~~i~iwd~~~~~~~~~~~h~-----~~v~~-~~~~~~~~~~sgs~------Dg~i~vwd~~~~~~~~-~~~-   95 (327)
                      .+++++.|+.|.-+|..+|++.-.....     ..+.+ -... +..++.+..      ++.|..+|.++++... +.. 
T Consensus       119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~  197 (668)
T 1kv9_A          119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV  197 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEeccc
Confidence            5777888999999999999865433211     11111 1122 345555443      5899999998887643 111 


Q ss_pred             -CC-----------------------------ccEEEEEEeCCCCEEEEEECCC-------------------eEEEEeC
Q psy11885         96 -HD-----------------------------QPIRAVEYSDEVNCILTGSWDT-------------------SVKMWDP  126 (327)
Q Consensus        96 -h~-----------------------------~~V~~l~~~~~~~~l~sgs~d~-------------------~i~lwdl  126 (327)
                       ..                             .....++++++.+.++.++.++                   .|..+|.
T Consensus       198 ~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~  277 (668)
T 1kv9_A          198 PGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP  277 (668)
T ss_dssp             CCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred             CCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcC
Confidence             00                             0112467888888898887766                   4999999


Q ss_pred             CCCceeeeeeCC----------CcE--EEEecCCC---eEEEEeCCCeEEEEECCCCccc
Q psy11885        127 RSSRCVGNYTQP----------DKV--FTMSLCGE---KFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus       127 ~~~~~~~~~~~~----------~~~--~~~~~~~~---~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      ++++.++.++..          ...  ..+..+++   .++.++.+|.+.++|.++++.+
T Consensus       278 ~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          278 DTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             TTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            999998877642          111  22334554   4788889999999999988765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.72  E-value=1.3e-06  Score=80.51  Aligned_cols=254  Identities=12%  Similarity=0.086  Sum_probs=148.5

Q ss_pred             eEEEEe---cCCCcEEEEEE-CCCcEEEEECCCCeEEEE--ecCCCceeeEEE---eCCceEEEEe--------------
Q psy11885         19 TAVKFA---PNSNQFLLASS-WDCNVSLYDITNNNLRLK--YAHSDPVLDCCF---QDAVHSFSGG--------------   75 (327)
Q Consensus        19 ~~i~fs---~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~--~~h~~~v~~~~~---~~~~~~~sgs--------------   75 (327)
                      ..+++.   +++ ++|.... .++.|.+-|+.+.++...  ..-......+++   +++.+++.++              
T Consensus        90 ~~~s~t~g~~DG-~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~  168 (595)
T 1fwx_A           90 VHMSFTEGKYDG-RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  168 (595)
T ss_dssp             EEEEEETTEEEE-EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             cccCCCCCCcCC-CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence            455552   343 5555555 456799999999986542  222344667776   5788888774              


Q ss_pred             ----cCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCC--------------------------------
Q psy11885         76 ----LDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDT--------------------------------  119 (327)
Q Consensus        76 ----~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~--------------------------------  119 (327)
                          .++.+.+.|.++.+....-.-.+.-..++++++|+++++.+++.                                
T Consensus       169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G  248 (595)
T 1fwx_A          169 DVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  248 (595)
T ss_dssp             CGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             cccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence                34578889988765432111111235577899999999888653                                


Q ss_pred             ------eEEEEeCCC--Cce-eeeeeC--CCcEEEEecCCCeEEEEe-CCCeEEEEECCCCccceeeecccceeeeEEeE
Q psy11885        120 ------SVKMWDPRS--SRC-VGNYTQ--PDKVFTMSLCGEKFVVGT-AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK  187 (327)
Q Consensus       120 ------~i~lwdl~~--~~~-~~~~~~--~~~~~~~~~~~~~~~~~~-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~  187 (327)
                            .|.+.|.++  ++. +..+..  ......++++|++++++. .+++|.++|+++.+...   ...+.       
T Consensus       249 k~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~---~~~l~-------  318 (595)
T 1fwx_A          249 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF---YENAD-------  318 (595)
T ss_dssp             CSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH---HSCCC-------
T ss_pred             CeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc---ccccC-------
Confidence                  366777776  433 344432  223467788888766654 56789999987532110   00000       


Q ss_pred             EeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC-
Q psy11885        188 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN-  266 (327)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~-  266 (327)
                        +.  ..+.+.         ...                   +.    ....++|+|+|...++---|+.|-+||+.+ 
T Consensus       319 --~~--~~v~~~---------v~v-------------------G~----gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a  362 (595)
T 1fwx_A          319 --PR--SAVVAE---------PEL-------------------GL----GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  362 (595)
T ss_dssp             --GG--GGEEEC---------CBC-------------------CS----CEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             --cc--cceEEE---------cCC-------------------CC----CcceEEECCCCeEEEEEecCCcEEEEEhhHh
Confidence              00  000000         000                   00    134689999995555677799999999876 


Q ss_pred             ---------ceeeeecCcCCcce-----EEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEEEc
Q psy11885        267 ---------KKRLCQFHRYDTGI-----TSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHV  319 (327)
Q Consensus       267 ---------~~~~~~~~~~~~~v-----~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (327)
                               .+.+.++..|-.+-     ..+.++|||++|.++.....-..-+--++++.+--+|-+
T Consensus       363 ~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~di  429 (595)
T 1fwx_A          363 IRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDI  429 (595)
T ss_dssp             HHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEEC
T ss_pred             hhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEc
Confidence                     34455554443321     234679999999999877655544433444444344444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.68  E-value=0.00012  Score=62.61  Aligned_cols=249  Identities=11%  Similarity=0.047  Sum_probs=136.9

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCC--cEEEEEcCCCceee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDC--TLKMFDFNTQTETV   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg--~i~vwd~~~~~~~~   92 (327)
                      .....++|+++ +.++++...++.|..||..++.. ........+..+++. ++..+++.....  .|..+|..++....
T Consensus        32 ~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g~~~-~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPD-GTIFVTNHEVGEIVSITPDGNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTT-SCEEEEETTTTEEEEECTTCCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCC-CCEEEEeCCCCeEEEECCCCceE-EEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            45678999995 45666655788999999876543 233334457778885 555433333222  35556666655433


Q ss_pred             eec--CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce-eee----e---e---CCCcEEEEecCCCeEEEE-eCCC
Q psy11885         93 IGT--HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC-VGN----Y---T---QPDKVFTMSLCGEKFVVG-TAGR  158 (327)
Q Consensus        93 ~~~--h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~-~~~----~---~---~~~~~~~~~~~~~~~~~~-~~d~  158 (327)
                      +..  .......++..+++..+++-..++.|..+|..+++. +..    +   .   .......+++++..++++ +..+
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~  189 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKM  189 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCC
Confidence            221  122234455545444444444588999999875421 110    0   0   001122235566655444 4456


Q ss_pred             eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885        159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV  238 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v  238 (327)
                      .|..+|+......     ...                         .+. ...                        ...
T Consensus       190 ~I~~~~~~~~g~~-----~~~-------------------------~~~-~~~------------------------~~P  214 (306)
T 2p4o_A          190 LLLRIPVDSTDKP-----GEP-------------------------EIF-VEQ------------------------TNI  214 (306)
T ss_dssp             EEEEEEBCTTSCB-----CCC-------------------------EEE-EES------------------------CCC
T ss_pred             EEEEEEeCCCCCC-----Ccc-------------------------EEE-ecc------------------------CCC
Confidence            7777776531100     000                         000 000                        013


Q ss_pred             eEEEEecCCCeEEEecCCCeEEEEeCCCcee--eeecCcCCcceEEEEEC---CCCCEEEEEEccccccCCCCCCCCCCc
Q psy11885        239 NAISFHQEYNTFATGGSDGYVNIWDGFNKKR--LCQFHRYDTGITSLCFS---YDGNVLAIACSYNYELETPPDPIPPNN  313 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~dg~i~iWd~~~~~~--~~~~~~~~~~v~~l~fs---pdg~~la~~~~~~~~~~~~~~~~~~~~  313 (327)
                      ..++++++|.++++....+.|.++|.. ++.  +..+...-...++++|.   ||++.|.+++........ ........
T Consensus       215 ~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~~~~~~-~~~~~~g~  292 (306)
T 2p4o_A          215 DDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGGMFLPP-PTGVVPAN  292 (306)
T ss_dssp             SSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTTSSSCC-TTCCCCEE
T ss_pred             CCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCCcccCC-Ccccccce
Confidence            457889999888877778899999964 554  22333222457899999   898888777665433322 12234556


Q ss_pred             EEEEEccccc
Q psy11885        314 IFIRHVTDQE  323 (327)
Q Consensus       314 ~~~~~~~~~~  323 (327)
                      ||-+.+--.|
T Consensus       293 v~~i~~~~~G  302 (306)
T 2p4o_A          293 VVRLEVGKPG  302 (306)
T ss_dssp             EEEEECSSCB
T ss_pred             EEEEecCCCC
Confidence            8887764433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.68  E-value=2.6e-05  Score=72.91  Aligned_cols=142  Identities=11%  Similarity=0.063  Sum_probs=89.4

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCC-----ceee-EEEeCCceEEEEec------CCcEEEEEcCCCceeeeecC
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSD-----PVLD-CCFQDAVHSFSGGL------DCTLKMFDFNTQTETVIGTH   96 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-----~v~~-~~~~~~~~~~sgs~------Dg~i~vwd~~~~~~~~~~~h   96 (327)
                      ..+++++.|+.+..+|..+|++.-......     .+.+ .... +..++.++.      ++.|..+|.++++.......
T Consensus       116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            357777889999999999998654332111     2221 1122 345666654      78999999998875431110


Q ss_pred             Ccc--------------------------------------E-EEEEEeCCCCEEEEEECC----------------CeE
Q psy11885         97 DQP--------------------------------------I-RAVEYSDEVNCILTGSWD----------------TSV  121 (327)
Q Consensus        97 ~~~--------------------------------------V-~~l~~~~~~~~l~sgs~d----------------~~i  121 (327)
                      ..+                                      + ..+++.++...++.++.+                +.|
T Consensus       195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v  274 (571)
T 2ad6_A          195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence            000                                      0 235677777777766532                369


Q ss_pred             EEEeCCCCceeeeeeCCC----------c-E-EEEecCCC---eEEEEeCCCeEEEEECCCCccc
Q psy11885        122 KMWDPRSSRCVGNYTQPD----------K-V-FTMSLCGE---KFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus       122 ~lwdl~~~~~~~~~~~~~----------~-~-~~~~~~~~---~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      ..+|.++++.++.++...          . + .....+|+   .++.++.+|.+.++|.++++.+
T Consensus       275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~  339 (571)
T 2ad6_A          275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence            999999999888765321          1 1 11223453   4667888999999999888754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.65  E-value=4.1e-09  Score=93.27  Aligned_cols=102  Identities=15%  Similarity=0.061  Sum_probs=58.3

Q ss_pred             CCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc--E-EE
Q psy11885         67 DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK--V-FT  143 (327)
Q Consensus        67 ~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~--~-~~  143 (327)
                      .+..+++++.|+.|..||..+++....... .++.+..+..++..+++++.|+.|..||.++++.++.+.....  + ..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            467889999999999999988876532222 3444444556677788888999999999988887665543210  0 00


Q ss_pred             Eec-CCCeEEEEeCCCeEEEEECCCCc
Q psy11885        144 MSL-CGEKFVVGTAGRKVCIWDLRNMG  169 (327)
Q Consensus       144 ~~~-~~~~~~~~~~d~~v~iwD~~~~~  169 (327)
                      ... .+..+++++.++.|..||.++++
T Consensus        87 p~~~~~~~v~~g~~dg~v~a~D~~tG~  113 (369)
T 2hz6_A           87 PCRSSDGILYMGKKQDIWYVIDLLTGE  113 (369)
T ss_dssp             SCC-----CCCCEEEEEEEEECCC---
T ss_pred             ceEecCCEEEEEeCCCEEEEEECCCCc
Confidence            011 34456777788889999887654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.65  E-value=5.9e-05  Score=70.68  Aligned_cols=141  Identities=15%  Similarity=0.118  Sum_probs=90.5

Q ss_pred             EEEEECCCcEEEEECCCCeEEEEecCCC-----ceee-EEEeCCceEEEEe------cCCcEEEEEcCCCceeeeecCCc
Q psy11885         31 LLASSWDCNVSLYDITNNNLRLKYAHSD-----PVLD-CCFQDAVHSFSGG------LDCTLKMFDFNTQTETVIGTHDQ   98 (327)
Q Consensus        31 l~s~~~d~~i~iwd~~~~~~~~~~~h~~-----~v~~-~~~~~~~~~~sgs------~Dg~i~vwd~~~~~~~~~~~h~~   98 (327)
                      ++.++.|+.+.-+|..+|++.-......     .+.+ -...+ ..++.++      .++.|+.+|.++++.........
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~  202 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEEC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence            6778889999999999998654332111     2221 12233 3555554      38999999999887643211110


Q ss_pred             c--------------------------------------E-EEEEEeCCCCEEEEEECC----------------CeEEE
Q psy11885         99 P--------------------------------------I-RAVEYSDEVNCILTGSWD----------------TSVKM  123 (327)
Q Consensus        99 ~--------------------------------------V-~~l~~~~~~~~l~sgs~d----------------~~i~l  123 (327)
                      +                                      + ....+.++...++.+..+                +.|..
T Consensus       203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A  282 (599)
T 1w6s_A          203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (599)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence            0                                      1 134567777888877655                38999


Q ss_pred             EeCCCCceeeeeeCCC----------cEEEEe---cCC---CeEEEEeCCCeEEEEECCCCccce
Q psy11885        124 WDPRSSRCVGNYTQPD----------KVFTMS---LCG---EKFVVGTAGRKVCIWDLRNMGYIM  172 (327)
Q Consensus       124 wdl~~~~~~~~~~~~~----------~~~~~~---~~~---~~~~~~~~d~~v~iwD~~~~~~~~  172 (327)
                      +|.++++.++.++...          ....+.   .+|   ..++.++.+|.+.++|.++++.+.
T Consensus       283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence            9999999888776421          112222   346   346668899999999999887643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.61  E-value=0.00013  Score=68.21  Aligned_cols=143  Identities=15%  Similarity=0.105  Sum_probs=90.0

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCC-----cee-eEEEeCC----c-eEEEEe------cCCcEEEEEcCCCcee
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSD-----PVL-DCCFQDA----V-HSFSGG------LDCTLKMFDFNTQTET   91 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-----~v~-~~~~~~~----~-~~~sgs------~Dg~i~vwd~~~~~~~   91 (327)
                      ..++.++.|+.+.-+|..+|++.-...-..     .+. .-...++    . .++.++      .++.|..+|..+++..
T Consensus       118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~  197 (582)
T 1flg_A          118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI  197 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEE
Confidence            357778889999999999998654332111     111 1122222    1 566654      3789999999887754


Q ss_pred             eeecCC-cc----------------------------------------E-EEEEEeCCCCEEEEEEC------------
Q psy11885         92 VIGTHD-QP----------------------------------------I-RAVEYSDEVNCILTGSW------------  117 (327)
Q Consensus        92 ~~~~h~-~~----------------------------------------V-~~l~~~~~~~~l~sgs~------------  117 (327)
                      ...... ..                                        + ...+++++...++.+..            
T Consensus       198 W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~  277 (582)
T 1flg_A          198 WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTA  277 (582)
T ss_dssp             EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSC
T ss_pred             eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccccc
Confidence            321100 00                                        0 12466777778887663            


Q ss_pred             --------C----CeEEEEeCCCCceeeeeeCC-C---------cEEEEe---cCCC---eEEEEeCCCeEEEEECCCCc
Q psy11885        118 --------D----TSVKMWDPRSSRCVGNYTQP-D---------KVFTMS---LCGE---KFVVGTAGRKVCIWDLRNMG  169 (327)
Q Consensus       118 --------d----~~i~lwdl~~~~~~~~~~~~-~---------~~~~~~---~~~~---~~~~~~~d~~v~iwD~~~~~  169 (327)
                              |    +.|..+|.++++.++.++.. .         ....+.   .+|+   .++.++.+|.+.++|.++++
T Consensus       278 ~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  357 (582)
T 1flg_A          278 KGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK  357 (582)
T ss_dssp             TTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             CCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence                    2    68999999999998877531 1         112222   3454   57778899999999998877


Q ss_pred             cc
Q psy11885        170 YI  171 (327)
Q Consensus       170 ~~  171 (327)
                      .+
T Consensus       358 ~l  359 (582)
T 1flg_A          358 LQ  359 (582)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.59  E-value=3.3e-05  Score=65.75  Aligned_cols=182  Identities=13%  Similarity=0.176  Sum_probs=104.9

Q ss_pred             cEEEEEEeCCCC-EEEEEECCCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeee
Q psy11885         99 PIRAVEYSDEVN-CILTGSWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRR  175 (327)
Q Consensus        99 ~V~~l~~~~~~~-~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~  175 (327)
                      -.....|+++.+ ++++...+++|..||..+++. ..+..+..+  +.++++++ ++++. ++.|.+||.++.+......
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEe
Confidence            345778888654 555666789999999987764 333333333  44555666 55554 6789999987654321111


Q ss_pred             c-cc-ceeeeEEeEEeeCCCceEEEeec---------CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        176 E-SS-LKFQTRCIKCFPNKQGYVLSSIE---------GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       176 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      . .. .....+.+++.+++..++.....         ....++.++.......   ..          ......+.++|+
T Consensus        91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~----------~~~~~pngi~~s  157 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---YF----------DQVDISNGLDWS  157 (297)
T ss_dssp             CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---EE----------EEESBEEEEEEC
T ss_pred             cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---Ee----------eccccccceEEc
Confidence            1 11 11224566777776644333221         2345555553221110   00          011135789999


Q ss_pred             cCCCeE-EEecCCCeEEEEeC--CCcee-----eeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885        245 QEYNTF-ATGGSDGYVNIWDG--FNKKR-----LCQFHRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       245 pd~~~l-asgs~dg~i~iWd~--~~~~~-----~~~~~~~~~~v~~l~fspdg~~la~~~  296 (327)
                      ||++.| ++.+.++.|.+|++  .++..     ...+.........++++++|++.++..
T Consensus       158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~  217 (297)
T 3g4e_A          158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY  217 (297)
T ss_dssp             TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE
T ss_pred             CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc
Confidence            999876 55666789999986  34432     222333334568899999998776654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.58  E-value=1.5e-05  Score=71.32  Aligned_cols=146  Identities=14%  Similarity=0.113  Sum_probs=93.3

Q ss_pred             EEEecCCCcEEEEEECCC--cEEEEECCCCeEEEEe----c-CCCceeeEEEeC-CceEEEEecCCcEEEEEcCCCceee
Q psy11885         21 VKFAPNSNQFLLASSWDC--NVSLYDITNNNLRLKY----A-HSDPVLDCCFQD-AVHSFSGGLDCTLKMFDFNTQTETV   92 (327)
Q Consensus        21 i~fs~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~----~-h~~~v~~~~~~~-~~~~~sgs~Dg~i~vwd~~~~~~~~   92 (327)
                      ++|+|++ ..|+++..++  .|.+++..++......    . ....+.++++.+ +..++.+..++.|..||.+++....
T Consensus       176 ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~  254 (409)
T 3hrp_A          176 PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL  254 (409)
T ss_dssp             CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE
T ss_pred             eeEecCC-CcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE
Confidence            8999964 5777777665  7889988765432222    2 334567788864 6677777778899999998765443


Q ss_pred             e-----ecCCcc--EEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeeeCC-----------------CcEEEEecC
Q psy11885         93 I-----GTHDQP--IRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYTQP-----------------DKVFTMSLC  147 (327)
Q Consensus        93 ~-----~~h~~~--V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-----------------~~~~~~~~~  147 (327)
                      +     .++...  ...++|+|+ +.++++-...++|+.||.... ........                 ..-++++++
T Consensus       255 ~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d  333 (409)
T 3hrp_A          255 IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED  333 (409)
T ss_dssp             EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred             EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence            3     112222  238999995 555555567899999997643 11111110                 123556667


Q ss_pred             CCeEEEEe-CCCeEEEEECCCC
Q psy11885        148 GEKFVVGT-AGRKVCIWDLRNM  168 (327)
Q Consensus       148 ~~~~~~~~-~d~~v~iwD~~~~  168 (327)
                      |+.+++-+ .++.|+.||+.++
T Consensus       334 G~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          334 GNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             CCEEEEETTTTCEEEEEETTTT
T ss_pred             CCEEEEeCCCCCEEEEEECCCC
Confidence            77566656 6789999997543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.58  E-value=7.2e-06  Score=78.43  Aligned_cols=141  Identities=15%  Similarity=0.136  Sum_probs=90.2

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCc-----------e-eeEEEeCCceEEEEecCCcEEEEEcCCCceeeee-c
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDP-----------V-LDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIG-T   95 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~-----------v-~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~-~   95 (327)
                      ..|++++.++.|.-+|..+|+.+-.+.....           + ...++ .+..++.++.|+.|..+|..+++..... .
T Consensus        71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~  149 (689)
T 1yiq_A           71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV-WKGKVYVGVLDGRLEAIDAKTGQRAWSVDT  149 (689)
T ss_dssp             TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE-ECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence            3567777889999999999987654432211           1 11222 3567888999999999999988764321 1


Q ss_pred             --CC---ccEEE-EEEeCCCCEEEEEE------CCCeEEEEeCCCCceeeeeeC-C---C--------------------
Q psy11885         96 --HD---QPIRA-VEYSDEVNCILTGS------WDTSVKMWDPRSSRCVGNYTQ-P---D--------------------  139 (327)
Q Consensus        96 --h~---~~V~~-l~~~~~~~~l~sgs------~d~~i~lwdl~~~~~~~~~~~-~---~--------------------  139 (327)
                        +.   ..+.+ -.+ .++ .++.++      .++.|..||.++++.++.+.. +   .                    
T Consensus       150 ~~~~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          150 RADHKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             CSCTTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             cCCCCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence              11   11110 011 133 455443      378999999999998877642 1   0                    


Q ss_pred             ----------cEEEEecCCCeEEEEeCCC-------------------eEEEEECCCCccce
Q psy11885        140 ----------KVFTMSLCGEKFVVGTAGR-------------------KVCIWDLRNMGYIM  172 (327)
Q Consensus       140 ----------~~~~~~~~~~~~~~~~~d~-------------------~v~iwD~~~~~~~~  172 (327)
                                ...++++..+.+++++.++                   .|..||.++++..-
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W  289 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVW  289 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEE
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeE
Confidence                      1234555667788887765                   39999999887653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.50  E-value=2.4e-05  Score=67.13  Aligned_cols=204  Identities=11%  Similarity=0.077  Sum_probs=100.2

Q ss_pred             CceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-E--EEE
Q psy11885         68 AVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-V--FTM  144 (327)
Q Consensus        68 ~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-~--~~~  144 (327)
                      +..++.++.++.+..+|.+.........+...+.++...+++..++... ++.|..+|.. ++.+..+..... +  ...
T Consensus       107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  184 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSN-DNYLYAINPD-GTEKWRFKTNDAITSAASI  184 (330)
T ss_dssp             TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECT-TSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred             CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcC-CCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence            4556666667777777766554443333444555556666666666663 4667777766 655554443221 1  122


Q ss_pred             ecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee
Q psy11885        145 SLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC  224 (327)
Q Consensus       145 ~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  224 (327)
                      ...+ .+.+++  +.|..+| .+++.........  ....++...++ ..+.+++.++....  ++...   .....+..
T Consensus       185 d~~g-~l~v~t--~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~-g~l~v~t~~~gl~~--~~~~g---~~~~~~~~  252 (330)
T 3hxj_A          185 GKDG-TIYFGS--DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISED-GTIYVTSLDGHLYA--INPDG---TEKWRFKT  252 (330)
T ss_dssp             CTTC-CEEEES--SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTT-SCEEEEETTTEEEE--ECTTS---CEEEEEEC
T ss_pred             cCCC-EEEEEe--CEEEEEC-CCCcEEEEEccCC--cceeceEECCC-CeEEEEcCCCeEEE--ECCCC---CEeEEeeC
Confidence            2223 344444  6666677 4443322211110  01112222222 23444444333322  22211   01111110


Q ss_pred             eeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       225 h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      .    ..     .+.++...+++ .|..++.+|.+..+|. +++.+..+......+.++...++|++.+ ++.
T Consensus       253 ~----~~-----~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~  313 (330)
T 3hxj_A          253 G----KR-----IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTR  313 (330)
T ss_dssp             S----SC-----CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECT
T ss_pred             C----CC-----ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcC
Confidence            0    00     12234444455 5666778888999995 6666665544445577888888887665 543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.49  E-value=0.00035  Score=58.22  Aligned_cols=215  Identities=9%  Similarity=0.004  Sum_probs=126.5

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC-CCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH-SDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETV   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h-~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~   92 (327)
                      ..+..++|+++++.++++...++.|..++..++........ -.....+++. ++..++ +-...+.|.+++++......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            35678999996555555555678999999987654333322 2356778885 455565 44456789999987654333


Q ss_pred             ee-cCCccEEEEEEeCCCCEEEEEEC---CCeEEEEeCCCCceeeeee-C-C--CcEEEEecCCCeEEEE-eCCCeEEEE
Q psy11885         93 IG-THDQPIRAVEYSDEVNCILTGSW---DTSVKMWDPRSSRCVGNYT-Q-P--DKVFTMSLCGEKFVVG-TAGRKVCIW  163 (327)
Q Consensus        93 ~~-~h~~~V~~l~~~~~~~~l~sgs~---d~~i~lwdl~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~-~~d~~v~iw  163 (327)
                      +. ........+++++++..|+.+..   .+.|..+++... ....+. . .  ..-+++++.+..++.+ ...+.|.++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            32 22234688999997766666554   368888887532 222221 1 1  1234555555565544 345677777


Q ss_pred             ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      |......             ..  +                    ....      .                 ....++.
T Consensus       195 ~~~g~~~-------------~~--~--------------------~~~~------~-----------------~P~gi~~  216 (267)
T 1npe_A          195 NPAQPGR-------------RK--V--------------------LEGL------Q-----------------YPFAVTS  216 (267)
T ss_dssp             ETTEEEE-------------EE--E--------------------EECC------C-----------------SEEEEEE
T ss_pred             ecCCCce-------------EE--E--------------------ecCC------C-----------------CceEEEE
Confidence            7653110             00  0                    0000      0                 0123444


Q ss_pred             ecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCc-ceEEEEECCCCC
Q psy11885        244 HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT-GITSLCFSYDGN  290 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~-~v~~l~fspdg~  290 (327)
                      . .+..+++...++.|..+|..+++.+..+..... ..+.+++.|++.
T Consensus       217 d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          217 Y-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             E-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             e-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            3 333444555568999999988888877754332 357899999876

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.48  E-value=6.1e-06  Score=79.04  Aligned_cols=189  Identities=10%  Similarity=0.006  Sum_probs=108.6

Q ss_pred             CCccEEEEEEeCCCCEEEEE-----ECCCeEEEEeCCCCceeee-eeCC-CcEEEEecCCCeEEEEeCCC----------
Q psy11885         96 HDQPIRAVEYSDEVNCILTG-----SWDTSVKMWDPRSSRCVGN-YTQP-DKVFTMSLCGEKFVVGTAGR----------  158 (327)
Q Consensus        96 h~~~V~~l~~~~~~~~l~sg-----s~d~~i~lwdl~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~d~----------  158 (327)
                      |...+..+.|||||++|+-+     +.+.+|++||+.+++.+.. +... ....+++ +++.|+.++.+.          
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            45578889999999988843     3335799999999986543 2221 2345677 888888887763          


Q ss_pred             ---eEEEEECCCCcc--ceeeeccc-ceeeeEEeEEeeCCCceEEEeecC--eEEEEEccCCcccccceeeeeeeeeccC
Q psy11885        159 ---KVCIWDLRNMGY--IMQRRESS-LKFQTRCIKCFPNKQGYVLSSIEG--RAAVEYLDTGPEMQKMKYAFKCHRIKED  230 (327)
Q Consensus       159 ---~v~iwD~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~h~~~~~  230 (327)
                         .|++|++.+...  ........ .+.....+.++++++.+++....+  ...+++++......... .+..+.   .
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-~l~~~~---~  281 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-TVQGDL---D  281 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-EEECSS---S
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-EEeCCC---C
Confidence               499999876532  11111111 111123456778877666554422  23566665432211111 111111   0


Q ss_pred             CeeeEEEeeEEEEecCCCeEE-EecCC---CeEEEEeCCCcee--eeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885        231 GIEKIYPVNAISFHQEYNTFA-TGGSD---GYVNIWDGFNKKR--LCQFHRYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       231 ~~~~~~~v~~v~~spd~~~la-sgs~d---g~i~iWd~~~~~~--~~~~~~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                            ..... +++++..|+ +...+   +.|..+|+.++..  ...+..+...+.  .|+|+|++|+.....
T Consensus       282 ------~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~  346 (693)
T 3iuj_A          282 ------ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMV  346 (693)
T ss_dssp             ------SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred             ------ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence                  01122 566666554 44333   5799999887643  233434444444  999999999887653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.46  E-value=9.6e-05  Score=70.27  Aligned_cols=112  Identities=14%  Similarity=0.183  Sum_probs=70.4

Q ss_pred             EEEEecCCCcEEEEEECCC-----------cEEEEECCCCeEEEE--e--cCCCceeeEEE-eCCceEEEEec-CCcEEE
Q psy11885         20 AVKFAPNSNQFLLASSWDC-----------NVSLYDITNNNLRLK--Y--AHSDPVLDCCF-QDAVHSFSGGL-DCTLKM   82 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~--~--~h~~~v~~~~~-~~~~~~~sgs~-Dg~i~v   82 (327)
                      ++++.|.++++++.||.+.           .+.+||..+++-...  .  .+.....++++ .++..++.||. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            6677774467888887653           588999988762211  1  12222334455 46777778874 468999


Q ss_pred             EEcCCCceeeeec-CC-ccEEEEEEeCCCCEEEEEE-CC-----CeEEEEeCCCCce
Q psy11885         83 FDFNTQTETVIGT-HD-QPIRAVEYSDEVNCILTGS-WD-----TSVKMWDPRSSRC  131 (327)
Q Consensus        83 wd~~~~~~~~~~~-h~-~~V~~l~~~~~~~~l~sgs-~d-----~~i~lwdl~~~~~  131 (327)
                      ||..++.-..+.. +. ..-.+++..++++.++.|+ .+     ..+.+||+.+++.
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            9988765332221 11 1113445557889888888 44     5789999988764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.41  E-value=0.00021  Score=61.66  Aligned_cols=148  Identities=10%  Similarity=-0.090  Sum_probs=88.3

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC-----CCceeeEEEe-CCceEEEEecC----CcEEEEEc
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH-----SDPVLDCCFQ-DAVHSFSGGLD----CTLKMFDF   85 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h-----~~~v~~~~~~-~~~~~~sgs~D----g~i~vwd~   85 (327)
                      ..|.+++|+|+ +.++++ +. +.|.+||..+++.......     ...+..+++. ++...++...+    ....+|.+
T Consensus        90 ~~v~~i~~~~d-g~l~v~-~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~  166 (326)
T 2ghs_A           90 FMGSALAKISD-SKQLIA-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  166 (326)
T ss_dssp             SCEEEEEEEET-TEEEEE-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CcceEEEEeCC-CeEEEE-EC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence            57999999996 455554 33 4599999988876443322     1246777775 55544433321    23455544


Q ss_pred             CCCceeeeecCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCC--CC-ce-----eeeeeC-CCc--EEEEecCCCeEEE
Q psy11885         86 NTQTETVIGTHDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPR--SS-RC-----VGNYTQ-PDK--VFTMSLCGEKFVV  153 (327)
Q Consensus        86 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~--~~-~~-----~~~~~~-~~~--~~~~~~~~~~~~~  153 (327)
                      +.+....+..+......++|+++++.++.+ +.++.|.+||+.  ++ +.     +..+.. ...  .+.++..|..+++
T Consensus       167 ~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva  246 (326)
T 2ghs_A          167 AKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA  246 (326)
T ss_dssp             ETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred             eCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE
Confidence            433333332333456789999999877555 557899999985  55 32     112211 112  2344555665555


Q ss_pred             EeCCCeEEEEECC
Q psy11885        154 GTAGRKVCIWDLR  166 (327)
Q Consensus       154 ~~~d~~v~iwD~~  166 (327)
                      ...++.|.+||..
T Consensus       247 ~~~~~~v~~~d~~  259 (326)
T 2ghs_A          247 RWGEGAVDRYDTD  259 (326)
T ss_dssp             EETTTEEEEECTT
T ss_pred             EeCCCEEEEECCC
Confidence            5567889999984

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.40  E-value=0.0001  Score=61.49  Aligned_cols=177  Identities=7%  Similarity=-0.030  Sum_probs=108.0

Q ss_pred             CeeEEEEecCCCcEEEEEEC--CCcEEEEECCCCeEEEEecCCC--ceeeEEEeCCceEE-EEecCCcEEEEEcCCCcee
Q psy11885         17 GITAVKFAPNSNQFLLASSW--DCNVSLYDITNNNLRLKYAHSD--PVLDCCFQDAVHSF-SGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~h~~--~v~~~~~~~~~~~~-sgs~Dg~i~vwd~~~~~~~   91 (327)
                      ....++|+|+ +.++++.+.  ++.|++.|..+++......-..  ....+++. +..++ +.-.++.+.++|..+.+..
T Consensus        22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEE
Confidence            4679999996 455555553  5799999999998655443211  12234554 44555 5555789999999876543


Q ss_pred             -eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC------c--EEEEecCCCeEEEE-eCCCeEE
Q psy11885         92 -VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD------K--VFTMSLCGEKFVVG-TAGRKVC  161 (327)
Q Consensus        92 -~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~-~~d~~v~  161 (327)
                       .+..-...  ...+++|++.++.+..+++|.++|.++.+.+..+....      .  .+.+. ++ .+.+. ..++.|.
T Consensus       100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~  175 (266)
T 2iwa_A          100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIA  175 (266)
T ss_dssp             EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEE
T ss_pred             EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEE
Confidence             23211111  12345577777777678999999999988777765321      1  12233 44 45444 4578999


Q ss_pred             EEECCCCccceeeecccc-----------eeeeEEeEEeeCCCceEEEe
Q psy11885        162 IWDLRNMGYIMQRRESSL-----------KFQTRCIKCFPNKQGYVLSS  199 (327)
Q Consensus       162 iwD~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~  199 (327)
                      +-|.++++.+.......+           ....+.+++.++++.+.++.
T Consensus       176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            999998875433322111           02346777777765544443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.35  E-value=8e-05  Score=61.65  Aligned_cols=149  Identities=7%  Similarity=-0.065  Sum_probs=96.2

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCce--eeEEEeCCceEEEEecCCcEEEEEcCCCcee-e
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPV--LDCCFQDAVHSFSGGLDCTLKMFDFNTQTET-V   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v--~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~-~   92 (327)
                      .-...+.|+.  +.++.+.+.+|.|+++|+.+++..... -....  -.+++..+........++.+.++|.++.+.. .
T Consensus        55 ~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           55 AFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            3457899984  578888888999999999999853333 22222  2244443333335556889999999887653 2


Q ss_pred             eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC------cEEEEec-CCCeEEEEe-CCCeEEEEE
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD------KVFTMSL-CGEKFVVGT-AGRKVCIWD  164 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~-~d~~v~iwD  164 (327)
                      +.. ...-..++  ++++.|+.+..+++|.++|.++.+.+..+....      ....+.+ +| .+.++. .++.|.+-|
T Consensus       132 i~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG-~lyanvw~s~~I~vID  207 (268)
T 3nok_A          132 TRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANG-VIYANIWHSSDVLEID  207 (268)
T ss_dssp             EEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT-EEEEEETTCSEEEEEC
T ss_pred             EeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCC-EEEEEECCCCeEEEEe
Confidence            221 22223444  456777777779999999999998877765421      1112222 45 454544 578899999


Q ss_pred             CCCCccc
Q psy11885        165 LRNMGYI  171 (327)
Q Consensus       165 ~~~~~~~  171 (327)
                      .++++..
T Consensus       208 p~TG~V~  214 (268)
T 3nok_A          208 PATGTVV  214 (268)
T ss_dssp             TTTCBEE
T ss_pred             CCCCcEE
Confidence            9887754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.35  E-value=0.00013  Score=63.52  Aligned_cols=154  Identities=12%  Similarity=0.040  Sum_probs=97.0

Q ss_pred             CCCCeeEEEEecCCCcEEEEEEC-----CCcEEEEECCCCeEEEEecC-------CCceeeEEEe-CCceEE-EEe---c
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSW-----DCNVSLYDITNNNLRLKYAH-------SDPVLDCCFQ-DAVHSF-SGG---L   76 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~h-------~~~v~~~~~~-~~~~~~-sgs---~   76 (327)
                      +...+..++|+++ ++++++...     ++.|.+||+.++++...+..       ...+..+++. ++..++ +..   .
T Consensus        65 ~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           65 TFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             ceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            3468999999996 455554332     57899999998885443321       1235678886 444554 444   6


Q ss_pred             CCcEEEEEcCCCceee-eecC-----------------------------CccEEEEEEeCCCCEEEEEECCC-eEEEEe
Q psy11885         77 DCTLKMFDFNTQTETV-IGTH-----------------------------DQPIRAVEYSDEVNCILTGSWDT-SVKMWD  125 (327)
Q Consensus        77 Dg~i~vwd~~~~~~~~-~~~h-----------------------------~~~V~~l~~~~~~~~l~sgs~d~-~i~lwd  125 (327)
                      ++.|.+||+.++.... +..|                             ...+..++++|+++.|+.+..++ .|..++
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            7899999987665432 2221                             01357899999999998887766 554444


Q ss_pred             CC---CCc-----ee---eeeeC--CCcEEEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885        126 PR---SSR-----CV---GNYTQ--PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNM  168 (327)
Q Consensus       126 l~---~~~-----~~---~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~  168 (327)
                      ..   .+.     ..   .....  ...-++++..|..+++...++.|.+||.+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G  279 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR  279 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence            21   110     01   11111  1123667777877888888899999998443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.34  E-value=0.00047  Score=59.22  Aligned_cols=150  Identities=13%  Similarity=0.029  Sum_probs=96.3

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-C-------------------CCceeeEEEeC-CceEEEEe
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-H-------------------SDPVLDCCFQD-AVHSFSGG   75 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h-------------------~~~v~~~~~~~-~~~~~sgs   75 (327)
                      ...+++|+++ +.++.++..++.|..||..+++...... .                   ...+..+++.. ...++.+.
T Consensus        20 ~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            3457899985 5667777888999999988766443221 0                   12456777763 56677776


Q ss_pred             cCCcEEEEEcCCCceeeeec-----CCccEEEEEEeC-CCCEEEEEEC-----------------CCeEEEEeCCCCcee
Q psy11885         76 LDCTLKMFDFNTQTETVIGT-----HDQPIRAVEYSD-EVNCILTGSW-----------------DTSVKMWDPRSSRCV  132 (327)
Q Consensus        76 ~Dg~i~vwd~~~~~~~~~~~-----h~~~V~~l~~~~-~~~~l~sgs~-----------------d~~i~lwdl~~~~~~  132 (327)
                      ..+.|..+|.+++....+..     .......+++.+ +|+..++-..                 ++.|..||..+++..
T Consensus        99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  178 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT  178 (322)
T ss_dssp             TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred             CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence            66668888876553332221     112467899999 8876665432                 367889998766543


Q ss_pred             eeee--CCCcEEEEecCCCeEEEE-eCCCeEEEEECCC
Q psy11885        133 GNYT--QPDKVFTMSLCGEKFVVG-TAGRKVCIWDLRN  167 (327)
Q Consensus       133 ~~~~--~~~~~~~~~~~~~~~~~~-~~d~~v~iwD~~~  167 (327)
                      ....  ....-++++++++.++++ +..+.|.+||+..
T Consensus       179 ~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          179 LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            2211  112245677777766655 5668999999875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.31  E-value=0.00016  Score=59.72  Aligned_cols=174  Identities=8%  Similarity=-0.017  Sum_probs=105.5

Q ss_pred             CeeEEEEecCCCcEEEEEECCC--cEEEEECCCCeEEEEecCCCcee--eEEEeCCceEE-EEecCCcEEEEEcCCCcee
Q psy11885         17 GITAVKFAPNSNQFLLASSWDC--NVSLYDITNNNLRLKYAHSDPVL--DCCFQDAVHSF-SGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~h~~~v~--~~~~~~~~~~~-sgs~Dg~i~vwd~~~~~~~   91 (327)
                      -...+.|+ + +.++.+.|.+|  .|+++|+.+++......-.....  .+++. +..++ ..-.++.+.++|.++.+..
T Consensus        44 ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           44 FTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             EEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             ccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEeeCCEEEEEECccCcEE
Confidence            34789998 3 46777777766  99999999999655443333332  24443 44555 4455889999999887653


Q ss_pred             -eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC--C-c-----EEEEecCCCeEEEE-eCCCeEE
Q psy11885         92 -VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP--D-K-----VFTMSLCGEKFVVG-TAGRKVC  161 (327)
Q Consensus        92 -~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~--~-~-----~~~~~~~~~~~~~~-~~d~~v~  161 (327)
                       .+.. ...=..++  ++++.|+.+..+++|.++|.++.+.+..+...  . .     .+.+. .| .+.++ ..++.|.
T Consensus       121 ~ti~~-~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~  195 (262)
T 3nol_A          121 RSFNY-DGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIV  195 (262)
T ss_dssp             EEEEC-SSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEE
T ss_pred             EEEEC-CCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEE
Confidence             2221 11113344  45666666656789999999998887776542  1 1     12232 45 44444 4578899


Q ss_pred             EEECCCCccceeeecccc----------eeeeEEeEEeeCCCceEEE
Q psy11885        162 IWDLRNMGYIMQRRESSL----------KFQTRCIKCFPNKQGYVLS  198 (327)
Q Consensus       162 iwD~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  198 (327)
                      +.|.++++.........+          ....+.+++.|..+.+.+.
T Consensus       196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT  242 (262)
T 3nol_A          196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT  242 (262)
T ss_dssp             EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred             EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence            999988775433222111          1123566777665544443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.28  E-value=6.8e-05  Score=64.01  Aligned_cols=147  Identities=9%  Similarity=0.081  Sum_probs=89.2

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC-----CCceeeEEEe-CCceEEE----Eec--------
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH-----SDPVLDCCFQ-DAVHSFS----GGL--------   76 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h-----~~~v~~~~~~-~~~~~~s----gs~--------   76 (327)
                      .+.+..+++++++ +++++...++.|.+|+.. ++......+     ...+..+++. ++...+|    |..        
T Consensus        85 ~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~  162 (305)
T 3dr2_A           85 TAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA  162 (305)
T ss_dssp             CSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred             CCccceeeECCCC-CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence            3568899999964 555544445789999986 554333221     1235567774 5655554    332        


Q ss_pred             -----CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECC------CeEEEEeCCCCcee--eeeeC----CC
Q psy11885         77 -----DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWD------TSVKMWDPRSSRCV--GNYTQ----PD  139 (327)
Q Consensus        77 -----Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d------~~i~lwdl~~~~~~--~~~~~----~~  139 (327)
                           .+.|..+|..++....+. .......++|+|+++.|+.+...      +.|.+||+..+...  ..+..    ..
T Consensus       163 ~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~p  241 (305)
T 3dr2_A          163 DPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLP  241 (305)
T ss_dssp             CCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCC
T ss_pred             ccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCC
Confidence                 245666666555543333 33456789999999988877665      78999998754311  11111    11


Q ss_pred             cEEEEecCCCeEEEEeCCCeEEEEECC
Q psy11885        140 KVFTMSLCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus       140 ~~~~~~~~~~~~~~~~~d~~v~iwD~~  166 (327)
                      ..+.++..|+ +.+++. +.|.+||..
T Consensus       242 dgi~~d~~G~-lwv~~~-~gv~~~~~~  266 (305)
T 3dr2_A          242 DGFCVDRGGW-LWSSSG-TGVCVFDSD  266 (305)
T ss_dssp             CSEEECTTSC-EEECCS-SEEEEECTT
T ss_pred             CeEEECCCCC-EEEecC-CcEEEECCC
Confidence            2345566676 455554 459999975

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.24  E-value=0.0012  Score=53.97  Aligned_cols=155  Identities=8%  Similarity=0.026  Sum_probs=97.8

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECC--CcEEEEECCCCeEEEEecCCCce--eeEEEeCCceEEEEecCCcEEEEEcCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWD--CNVSLYDITNNNLRLKYAHSDPV--LDCCFQDAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~h~~~v--~~~~~~~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      +....-...+.|++  +.++.+.|.+  ..|+.+|+.+++......-....  -.+++..+........++.+.++|.++
T Consensus        17 hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           17 HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCc
Confidence            34445677999996  4677777775  48999999999976554332222  233444333333556688999999988


Q ss_pred             Ccee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC------cEEEEecCCCeEEEEe-CCCe
Q psy11885         88 QTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD------KVFTMSLCGEKFVVGT-AGRK  159 (327)
Q Consensus        88 ~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~d~~  159 (327)
                      .+.. .+.. ...=..|+  ++++.|+.+..+++|.++|.++.+.+..+....      ....+.+.+..+.+.. .++.
T Consensus        95 l~~~~ti~~-~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~  171 (243)
T 3mbr_X           95 LTPRARFRY-PGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSR  171 (243)
T ss_dssp             TEEEEEEEC-SSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTE
T ss_pred             CcEEEEEeC-CCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCe
Confidence            7653 2221 12223454  456666666668999999999988877765421      1122333334454444 5778


Q ss_pred             EEEEECCCCccc
Q psy11885        160 VCIWDLRNMGYI  171 (327)
Q Consensus       160 v~iwD~~~~~~~  171 (327)
                      |.+.|.++++..
T Consensus       172 I~vIDp~tG~V~  183 (243)
T 3mbr_X          172 IARIDPASGKVV  183 (243)
T ss_dssp             EEEECTTTCBEE
T ss_pred             EEEEECCCCCEE
Confidence            999999887754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.22  E-value=4e-05  Score=65.74  Aligned_cols=243  Identities=9%  Similarity=0.047  Sum_probs=123.0

Q ss_pred             EEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCC-ceeeEEEeCCceEEEEecCCcEEEEEcCCCcee-eeecCC
Q psy11885         20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSD-PVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET-VIGTHD   97 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~   97 (327)
                      +..+..+  ..|.+++.++.|..|| .+++......... .+.++.......++.++.+  +..+|. ++... ......
T Consensus        24 ~~~~d~~--g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~   97 (330)
T 3hxj_A           24 SPILAKN--GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKK   97 (330)
T ss_dssp             CCEECTT--SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred             CceEccC--CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCC
Confidence            3444443  3467777889999999 7777543332222 2344455445566666555  888885 33221 111112


Q ss_pred             ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE-EEEecC-CCeEEEEeCCCeEEEEECCCCccceeee
Q psy11885         98 QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV-FTMSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRR  175 (327)
Q Consensus        98 ~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~  175 (327)
                      .......+.  +..+..++.++.|..+|.+ ++.......+... ...... ...+.+++.++.|..+|.. ++......
T Consensus        98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~  173 (330)
T 3hxj_A           98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK  173 (330)
T ss_dssp             ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred             CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe
Confidence            222223333  4578888889999999988 7766655433221 111112 4457788888999999987 44322111


Q ss_pred             cccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC
Q psy11885        176 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS  255 (327)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~  255 (327)
                      ...  .....+.... ...+.+++  +...  .++. ..  .....+..   ..      ..+.++...+++... .++.
T Consensus       174 ~~~--~~~~~~~~d~-~g~l~v~t--~~l~--~~d~-~g--~~~~~~~~---~~------~~~~~~~~~~~g~l~-v~t~  233 (330)
T 3hxj_A          174 TND--AITSAASIGK-DGTIYFGS--DKVY--AINP-DG--TEKWNFYA---GY------WTVTRPAISEDGTIY-VTSL  233 (330)
T ss_dssp             CSS--CCCSCCEECT-TCCEEEES--SSEE--EECT-TS--CEEEEECC---SS------CCCSCCEECTTSCEE-EEET
T ss_pred             cCC--CceeeeEEcC-CCEEEEEe--CEEE--EECC-CC--cEEEEEcc---CC------cceeceEECCCCeEE-EEcC
Confidence            110  0011122212 23344554  3332  2331 11  11111110   00      135677778887544 4556


Q ss_pred             CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEE
Q psy11885        256 DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA  293 (327)
Q Consensus       256 dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la  293 (327)
                      ++.+..+|. +++.+..+......+.++.+.++|.+.+
T Consensus       234 ~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v  270 (330)
T 3hxj_A          234 DGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF  270 (330)
T ss_dssp             TTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE
T ss_pred             CCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE
Confidence            777888874 5555554433222234455555555443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.21  E-value=0.00069  Score=60.45  Aligned_cols=140  Identities=9%  Similarity=0.091  Sum_probs=86.2

Q ss_pred             cCCCcEEEEEECCCcEEEEECCCC----eEEEEec-------CCC-ceeeEEE-eCCceEEEEecC------CcEEEEEc
Q psy11885         25 PNSNQFLLASSWDCNVSLYDITNN----NLRLKYA-------HSD-PVLDCCF-QDAVHSFSGGLD------CTLKMFDF   85 (327)
Q Consensus        25 ~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~-------h~~-~v~~~~~-~~~~~~~sgs~D------g~i~vwd~   85 (327)
                      ++...+++.+..++.|.+.|+.+.    ++.....       ... ....+.. +++ .++++..+      +.|.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            654445555667789999999754    4433331       111 1122222 455 55555444      78999998


Q ss_pred             CCCcee-eee--cCC-ccEEEEEEeCCCCEEEEEE-------------------CCCeEEEEeCCCCceeeeeeCCC---
Q psy11885         86 NTQTET-VIG--THD-QPIRAVEYSDEVNCILTGS-------------------WDTSVKMWDPRSSRCVGNYTQPD---  139 (327)
Q Consensus        86 ~~~~~~-~~~--~h~-~~V~~l~~~~~~~~l~sgs-------------------~d~~i~lwdl~~~~~~~~~~~~~---  139 (327)
                      ++.+.. ...  ... ..-..+-|+|+++.+++..                   .+.+|.+||+.+++.++++....   
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            876543 222  122 2234678899999888885                   37899999999988888877631   


Q ss_pred             cE--EEE--ecCCCeEEEEe------CCCeEEEEEC
Q psy11885        140 KV--FTM--SLCGEKFVVGT------AGRKVCIWDL  165 (327)
Q Consensus       140 ~~--~~~--~~~~~~~~~~~------~d~~v~iwD~  165 (327)
                      ..  +.+  ++++..++++.      .+++|.+|..
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~  287 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY  287 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence            11  223  56677766665      4567766544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.20  E-value=0.0015  Score=54.39  Aligned_cols=155  Identities=5%  Similarity=-0.008  Sum_probs=98.2

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC-CceeeEEEe-CCceEEEEec---CCcEEEEEcCCCce
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS-DPVLDCCFQ-DAVHSFSGGL---DCTLKMFDFNTQTE   90 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~-~~v~~~~~~-~~~~~~sgs~---Dg~i~vwd~~~~~~   90 (327)
                      .....++++|+++.++++....+.|.+++............. .....+++. ++..++.+..   .+.|..++++....
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~  158 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence            467899999965555555556789999998764432222222 345778885 3666665554   36788888875443


Q ss_pred             eeee-cCCccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEe-CCCeEEEEECCC
Q psy11885         91 TVIG-THDQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGT-AGRKVCIWDLRN  167 (327)
Q Consensus        91 ~~~~-~h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~v~iwD~~~  167 (327)
                      ..+. ..-.....++++++++.|+.+. ..++|..+|+........+........+...+..++++. .++.|.++|..+
T Consensus       159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCC
Confidence            3332 2223568899999877776554 568999999976443333333223344455566666654 457899999886


Q ss_pred             Ccc
Q psy11885        168 MGY  170 (327)
Q Consensus       168 ~~~  170 (327)
                      ++.
T Consensus       239 g~~  241 (267)
T 1npe_A          239 SKE  241 (267)
T ss_dssp             TEE
T ss_pred             CCc
Confidence            653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.16  E-value=0.0067  Score=58.85  Aligned_cols=267  Identities=10%  Similarity=0.112  Sum_probs=145.8

Q ss_pred             eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeee-
Q psy11885         18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIG-   94 (327)
Q Consensus        18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~-   94 (327)
                      |.++...++ +. |..+..++-+..||..+++.....  .....|.++.......+..|..++-+..||..++....+. 
T Consensus       175 i~~i~~d~~-g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~  252 (795)
T 4a2l_A          175 IASTLYRQG-DQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLH  252 (795)
T ss_dssp             CEEEEEEET-TE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECC
T ss_pred             eEEEEECCC-CC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeec
Confidence            888888874 34 444666556889998877654321  2334576666544445556665556888998765443221 


Q ss_pred             c-------CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC--------CCcEEEEecC-CCeEEEEeCCC
Q psy11885         95 T-------HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ--------PDKVFTMSLC-GEKFVVGTAGR  158 (327)
Q Consensus        95 ~-------h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~d~  158 (327)
                      .       ....|.++...++|.. ..|+.+ .|.+||..+++.......        ...+.++..+ ...+.+|+.++
T Consensus       253 ~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~  330 (795)
T 4a2l_A          253 SPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFG  330 (795)
T ss_dssp             CTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSS
T ss_pred             CCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCC
Confidence            1       1356999988888764 445555 689999877654322111        1234554443 33577888888


Q ss_pred             eEEEEECCCCccceeeec---ccce-eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccC-Cee
Q psy11885        159 KVCIWDLRNMGYIMQRRE---SSLK-FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED-GIE  233 (327)
Q Consensus       159 ~v~iwD~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~-~~~  233 (327)
                      -|..||..+.........   ..+. ....++.... ...+.+++.++....  ++....  ... .+........ ++.
T Consensus       331 Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~lWiGt~~~Gl~~--~~~~~~--~~~-~~~~~~~~~~~~l~  404 (795)
T 4a2l_A          331 GLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKNLWIGTNDGGLNL--YNPITQ--RFT-SYTLQEDESARGIG  404 (795)
T ss_dssp             CEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSCEEEEESSSCEEE--ECTTTC--CEE-EECCC------CCS
T ss_pred             CeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCCEEEEECCCCeEE--EcCCCC--cEE-EEecCCCCcccCCC
Confidence            899998654332111110   1111 1123333222 234566665544433  332211  110 0000000000 000


Q ss_pred             eEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC----cCCcceEEEEECCCCCEEEEE
Q psy11885        234 KIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH----RYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       234 ~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~----~~~~~v~~l~fspdg~~la~~  295 (327)
                       ...|.++...+++..|-.|+.++.+.+||..+++......    .....|.++...++|++.+.+
T Consensus       405 -~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt  469 (795)
T 4a2l_A          405 -SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT  469 (795)
T ss_dssp             -CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred             -CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence             0147788888888746667777779999987664322111    123468999999999876644

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.12  E-value=0.0078  Score=58.40  Aligned_cols=291  Identities=9%  Similarity=0.078  Sum_probs=161.1

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec--------CCCceeeEEEeCCceEEEEecCCcEEEEEcC
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA--------HSDPVLDCCFQDAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      ...|.++...+++ . |..|..+ -|.+||..+++......        ....|.++..-....+..|+.++-|..|+..
T Consensus       262 ~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCC
Confidence            4679999998854 3 4445555 58899988887544321        1235667666555567778888889999876


Q ss_pred             CCceeeeec-------CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee---------CCCcEEEEec--CC
Q psy11885         87 TQTETVIGT-------HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT---------QPDKVFTMSL--CG  148 (327)
Q Consensus        87 ~~~~~~~~~-------h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~---------~~~~~~~~~~--~~  148 (327)
                      +.....+..       ....|.++...++|+ |-.|+.++.|..||..+++......         ....+.++..  .+
T Consensus       339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g  417 (795)
T 4a2l_A          339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK  417 (795)
T ss_dssp             GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred             cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence            554322211       234689999888776 5567888889999987765432211         1233555544  34


Q ss_pred             CeEEEEeCCCeEEEEECCCCccceeee-cccce-eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeee
Q psy11885        149 EKFVVGTAGRKVCIWDLRNMGYIMQRR-ESSLK-FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR  226 (327)
Q Consensus       149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~  226 (327)
                      ..+.+|+.++-|.+||.++.+...... ...+. ....++...++ ..+.+++..| ..+  ++....  ... .+. ..
T Consensus       418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~lwigt~~G-l~~--~~~~~~--~~~-~~~-~~  489 (795)
T 4a2l_A          418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE-GNLWLGTLSA-LVR--FNPEQR--SFT-TIE-KE  489 (795)
T ss_dssp             TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS-SCEEEEESSC-EEE--EETTTT--EEE-ECC-BC
T ss_pred             CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC-CCEEEEecCc-eeE--EeCCCC--eEE-Ecc-cc
Confidence            338888888889999987654221111 00011 12233333222 3445555433 332  332211  110 000 00


Q ss_pred             eccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC-------cCCcceEEEEECCCCCEEEEEEccc
Q psy11885        227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-------RYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       227 ~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~-------~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      ...... ....|.++...+++...+...  +.+..||..+++.  .+.       .....|.++...++|++.+.+.. +
T Consensus       490 ~~~~~~-~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-G  563 (795)
T 4a2l_A          490 KDGTPV-VSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-G  563 (795)
T ss_dssp             TTCCBC-CCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-C
T ss_pred             cccccc-CCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-C
Confidence            000000 012477888888988777554  4588888766554  221       12346899999999986654432 3


Q ss_pred             cccCC----------CCCCCCCCcEEEEEccccc
Q psy11885        300 YELET----------PPDPIPPNNIFIRHVTDQE  323 (327)
Q Consensus       300 ~~~~~----------~~~~~~~~~~~~~~~~~~~  323 (327)
                      +.+.-          ..+-++.+.|+.+...++|
T Consensus       564 l~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g  597 (795)
T 4a2l_A          564 FYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFG  597 (795)
T ss_dssp             EEEEETTTTEEEEECGGGTCSCSCEEEEEECTTS
T ss_pred             ceeECCCCCcEEEeCCCCCCchhheEEEEECCCC
Confidence            33221          1233566666655544443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.06  E-value=0.00061  Score=64.85  Aligned_cols=141  Identities=13%  Similarity=0.071  Sum_probs=88.6

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCc-----------e-eeEEEeCCceEEEEecCCcEEEEEcCCCceeee-ec
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDP-----------V-LDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVI-GT   95 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~-----------v-~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~-~~   95 (327)
                      ..|++++.++.|.-+|..+|+.+-.+.....           + ...++ .+..++.++.|+.|..+|..+++.... ..
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~~  145 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence            3567777889999999999987654432211           1 11222 355788888999999999998876432 11


Q ss_pred             C----CccEEE-EEEeCCCCEEEEEEC------CCeEEEEeCCCCceeeeeeCC----C---------------------
Q psy11885         96 H----DQPIRA-VEYSDEVNCILTGSW------DTSVKMWDPRSSRCVGNYTQP----D---------------------  139 (327)
Q Consensus        96 h----~~~V~~-l~~~~~~~~l~sgs~------d~~i~lwdl~~~~~~~~~~~~----~---------------------  139 (327)
                      .    ...+.+ -.+. + ..++.+..      ++.|..+|.++++.++.+...    .                     
T Consensus       146 ~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w  223 (668)
T 1kv9_A          146 TDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (668)
T ss_dssp             SCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             CCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence            1    011110 0111 3 35555533      589999999999998876521    1                     


Q ss_pred             ---------cEEEEecCCCeEEEEeCCC-------------------eEEEEECCCCccce
Q psy11885        140 ---------KVFTMSLCGEKFVVGTAGR-------------------KVCIWDLRNMGYIM  172 (327)
Q Consensus       140 ---------~~~~~~~~~~~~~~~~~d~-------------------~v~iwD~~~~~~~~  172 (327)
                               ...++++..+.+++++.++                   .|.-+|.++++..-
T Consensus       224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W  284 (668)
T 1kv9_A          224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAW  284 (668)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred             eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceee
Confidence                     0134555567777777665                   48999999887643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.05  E-value=0.0016  Score=60.73  Aligned_cols=105  Identities=10%  Similarity=0.042  Sum_probs=66.2

Q ss_pred             EEEEEEC-CCcEEEEEC-CCCeEEEEecCCCc--e----------eeEEEeCCceEEEEecCCcEEEEEcCCCceeee--
Q psy11885         30 FLLASSW-DCNVSLYDI-TNNNLRLKYAHSDP--V----------LDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVI--   93 (327)
Q Consensus        30 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~h~~~--v----------~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~--   93 (327)
                      .+.+++. ++.|.-+|. .+|+.+-.+.....  +          ...++ .+..++.++.|+.+..+|..+++....  
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~  142 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQANGHLLALDAKTGKINWEVE  142 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE-ECCEEEEEeCCCEEEEEECCCCCEEEEec
Confidence            4566666 889999999 88886544432211  0          11222 356788888899999999988876432  


Q ss_pred             -ecCC--ccEEE-EEEeCCCCEEEEEEC------CCeEEEEeCCCCceeeeeeC
Q psy11885         94 -GTHD--QPIRA-VEYSDEVNCILTGSW------DTSVKMWDPRSSRCVGNYTQ  137 (327)
Q Consensus        94 -~~h~--~~V~~-l~~~~~~~~l~sgs~------d~~i~lwdl~~~~~~~~~~~  137 (327)
                       ..+.  ..+.+ .... + ..++.++.      ++.|..+|.++++.++.+..
T Consensus       143 ~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          143 VCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             CCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence             1111  01111 1111 3 45666654      79999999999998877653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.03  E-value=0.012  Score=57.02  Aligned_cols=291  Identities=11%  Similarity=0.106  Sum_probs=153.2

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec--------CCCceeeEEEeCCceEEEEecCCcEEEEEcC
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA--------HSDPVLDCCFQDAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      ...|.+|...+++ . |..|..+ -+.+||..+++......        ....|.++.......+..|...+-|.++|..
T Consensus       210 ~~~i~~i~~d~~g-~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~  286 (781)
T 3v9f_A          210 GNDVRCIYKDTNG-N-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQ  286 (781)
T ss_dssp             CSSEEEEEECTTC-C-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETT
T ss_pred             CCceeEEEEcCCC-C-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCC
Confidence            3578999888754 3 4444544 68899988776543221        1234666666445566667765678888877


Q ss_pred             CCceeeee---------------cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee----------CCCcE
Q psy11885         87 TQTETVIG---------------THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT----------QPDKV  141 (327)
Q Consensus        87 ~~~~~~~~---------------~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~----------~~~~~  141 (327)
                      +.....+.               -....|.++...++|. |-.|+.++-|..++..++.......          ....+
T Consensus       287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v  365 (781)
T 3v9f_A          287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV  365 (781)
T ss_dssp             CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred             CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence            65422111               1235689998888776 5667777889999987654221110          12235


Q ss_pred             EEEecCC-CeEEEEeCCCeEEEEECCCCccceeeecccce-eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccce
Q psy11885        142 FTMSLCG-EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK-FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK  219 (327)
Q Consensus       142 ~~~~~~~-~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  219 (327)
                      .++..+. ..+.+|+.++-|..||..+...........+. ....++...+ ...+.+++..+..  ..++....  ...
T Consensus       366 ~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWigt~~~Gl--~~~~~~~~--~~~  440 (781)
T 3v9f_A          366 SSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLWFGTYLGNI--SYYNTRLK--KFQ  440 (781)
T ss_dssp             EEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEEEEETTEEE--EEECSSSC--EEE
T ss_pred             EEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEEEEeccCCE--EEEcCCCC--cEE
Confidence            5555443 45778887777888997653221110000111 1122332222 2345555543332  22332211  010


Q ss_pred             eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc-----CCcceEEEEECCCCCEEEE
Q psy11885        220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-----YDTGITSLCFSYDGNVLAI  294 (327)
Q Consensus       220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~-----~~~~v~~l~fspdg~~la~  294 (327)
                       .+.   ..  .. ....|.++...+++.+.+.. . +.+..+|..+++.......     ....|.++...++|++.+.
T Consensus       441 -~~~---~~--~~-~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig  511 (781)
T 3v9f_A          441 -IIE---LE--KN-ELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG  511 (781)
T ss_dssp             -ECC---ST--TT-CCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred             -Eec---cC--CC-CCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence             000   00  00 01246788888888766544 3 5688898766543221111     1346899999999987765


Q ss_pred             EEccccccCCC----------CCCCCCCcEEEEEccccc
Q psy11885        295 ACSYNYELETP----------PDPIPPNNIFIRHVTDQE  323 (327)
Q Consensus       295 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  323 (327)
                      +...++.+..+          +..++.+.|+-+...+++
T Consensus       512 t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g  550 (781)
T 3v9f_A          512 TFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKG  550 (781)
T ss_dssp             ESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTS
T ss_pred             EcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCC
Confidence            43233333221          234556666655544443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.95  E-value=0.00023  Score=65.71  Aligned_cols=195  Identities=9%  Similarity=0.064  Sum_probs=114.7

Q ss_pred             CCceEEEEe-cCCcEEEEEcCCCcee-eeec-CCccEEEEEE-e-CCCCEEEEEE------------------CCCeEEE
Q psy11885         67 DAVHSFSGG-LDCTLKMFDFNTQTET-VIGT-HDQPIRAVEY-S-DEVNCILTGS------------------WDTSVKM  123 (327)
Q Consensus        67 ~~~~~~sgs-~Dg~i~vwd~~~~~~~-~~~~-h~~~V~~l~~-~-~~~~~l~sgs------------------~d~~i~l  123 (327)
                      ++.+++... .+++|.+-|+.+.+.. .+.- .......+++ . |++++++.++                  +++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            456666544 4567999999887643 2221 1234778887 4 8999999885                  3467999


Q ss_pred             EeCCCCceeeeeeCCC--cEEEEecCCCeEEEEeCCC---------------eEEEEECCCCccceeeecccceeeeEEe
Q psy11885        124 WDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVGTAGR---------------KVCIWDLRNMGYIMQRRESSLKFQTRCI  186 (327)
Q Consensus       124 wdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~---------------~v~iwD~~~~~~~~~~~~~~~~~~~~~~  186 (327)
                      .|..+.+..+++....  .-..++++|..+++.+.+.               .|.+.|.....                 
T Consensus       180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~-----------------  242 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE-----------------  242 (595)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH-----------------
T ss_pred             EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee-----------------
Confidence            9999998888776422  2456778888877766442               35555543211                 


Q ss_pred             EEeeCCCceEEEeecCeEEEEEccCCcccccc-eeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec-CCCeEEEEeC
Q psy11885        187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM-KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIWDG  264 (327)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs-~dg~i~iWd~  264 (327)
                      .+.++++...+    +.+.+  .|........ ...+..-          ....++.++|||+++++++ .+.+|.++|.
T Consensus       243 ~~v~~Gk~~~i----~~V~V--ID~~~~~~~~~~~~Ipvg----------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~  306 (595)
T 1fwx_A          243 KAIAAGDYQEL----NGVKV--VDGRKEASSLFTRYIPIA----------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDV  306 (595)
T ss_dssp             HHHHHTCSEEE----TTEEE--EECSGGGCCSSEEEEEEE----------SSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred             EeccCCCeeEE----CcEEE--EeCcccCCceeEEEEecC----------CCceEEEEcCCCCEEEEeCCCCCeEEEEEC
Confidence            01122222111    22333  4433311111 1111100          0245799999999876655 5789999998


Q ss_pred             CCce------------eeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885        265 FNKK------------RLCQFHRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       265 ~~~~------------~~~~~~~~~~~v~~l~fspdg~~la~~~  296 (327)
                      .+.+            ...++... .+-..++|+||| .+-++.
T Consensus       307 ~~~~~~~~~~l~~~~~v~~~v~vG-~gP~h~aF~~dG-~aY~t~  348 (595)
T 1fwx_A          307 TRFDAVFYENADPRSAVVAEPELG-LGPLHTAFDGRG-NAYTSL  348 (595)
T ss_dssp             GGHHHHHHSCCCGGGGEEECCBCC-SCEEEEEECTTS-EEEEEE
T ss_pred             cccccccccccCcccceEEEcCCC-CCcceEEECCCC-eEEEEE
Confidence            8653            23333322 345889999999 554544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.93  E-value=0.0035  Score=58.67  Aligned_cols=106  Identities=8%  Similarity=0.000  Sum_probs=66.6

Q ss_pred             EEEEEEC-CCcEEEEEC-CCCeEEEEecCCCc------------eeeEEEe-CCce----EEEEecCCcEEEEEcCCCce
Q psy11885         30 FLLASSW-DCNVSLYDI-TNNNLRLKYAHSDP------------VLDCCFQ-DAVH----SFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        30 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~h~~~------------v~~~~~~-~~~~----~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .|.+++. ++.|.-+|. .+|+.+-.+.....            ...+++. .+..    ++.++.|+.+..+|..+++.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~  143 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence            4666676 889999999 88886644432221            1123442 3444    88888999999999988876


Q ss_pred             eeee---cCC--ccEEE-EEEeCCCCEEEEEE------CCCeEEEEeCCCCceeeeeeC
Q psy11885         91 TVIG---THD--QPIRA-VEYSDEVNCILTGS------WDTSVKMWDPRSSRCVGNYTQ  137 (327)
Q Consensus        91 ~~~~---~h~--~~V~~-l~~~~~~~~l~sgs------~d~~i~lwdl~~~~~~~~~~~  137 (327)
                      ....   .+.  ..+.+ -.+. + ..++.++      .++.|+.+|.++++.++.+..
T Consensus       144 ~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          144 VWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            4321   110  01111 1111 3 3555554      489999999999998877653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.91  E-value=0.0048  Score=59.56  Aligned_cols=150  Identities=13%  Similarity=0.067  Sum_probs=87.6

Q ss_pred             CeeEEEEe-cCCCcEEEEEECCC----cEEEEECCCC-eEEEEecCCCceeeEEEe-CCceEEEEecC-----CcEEEEE
Q psy11885         17 GITAVKFA-PNSNQFLLASSWDC----NVSLYDITNN-NLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD-----CTLKMFD   84 (327)
Q Consensus        17 ~I~~i~fs-~~~~~~l~s~~~d~----~i~iwd~~~~-~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D-----g~i~vwd   84 (327)
                      .+...+|| |++..++.+.+.+|    .|+++|+.++ +.... .-......++|+ ++..++....|     ..|.+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            57789999 97543443444433    4999999988 62110 001112356785 67777766655     3577788


Q ss_pred             cCCCce---eeee-cCCccEEEEEEeCCCCEEEEEEC---CCeEEEEeCCCCc-ee--eeeeC--CCcEEEEe-cCCCeE
Q psy11885         85 FNTQTE---TVIG-THDQPIRAVEYSDEVNCILTGSW---DTSVKMWDPRSSR-CV--GNYTQ--PDKVFTMS-LCGEKF  151 (327)
Q Consensus        85 ~~~~~~---~~~~-~h~~~V~~l~~~~~~~~l~sgs~---d~~i~lwdl~~~~-~~--~~~~~--~~~~~~~~-~~~~~~  151 (327)
                      +.++..   .++. ........+.|+|||++|+..+.   ...|.++|+.+++ ..  ..+..  ....+... ..++.|
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l  333 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL  333 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence            877542   2222 23344667899999998876552   4578889987752 11  22221  12233443 337766


Q ss_pred             EEEeCC-----CeEEEEECCC
Q psy11885        152 VVGTAG-----RKVCIWDLRN  167 (327)
Q Consensus       152 ~~~~~d-----~~v~iwD~~~  167 (327)
                      +..+..     ..|..+|+.+
T Consensus       334 ~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          334 VILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEEECTTTCTTCEEEEEETTS
T ss_pred             EEEeCCCCCCCcEEEEEcCCC
Confidence            665443     2677778764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.76  E-value=0.012  Score=48.61  Aligned_cols=207  Identities=9%  Similarity=0.103  Sum_probs=114.8

Q ss_pred             eecCCccEEEEEEeCCCCEEEE-EECCCeEEEEeCCCCceeeeeeCC--CcEEEEecC-CCeEEEEe-CCCeEEEEECCC
Q psy11885         93 IGTHDQPIRAVEYSDEVNCILT-GSWDTSVKMWDPRSSRCVGNYTQP--DKVFTMSLC-GEKFVVGT-AGRKVCIWDLRN  167 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~s-gs~d~~i~lwdl~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~-~d~~v~iwD~~~  167 (327)
                      +.+-...+..++|+|+++.|++ ...++.|...|+. ++.+..+...  ...-.+.+. +..++++. .++.+.++++..
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            3445567999999998776654 6778899999987 8877776432  223333332 23444444 456788888765


Q ss_pred             Cccceeeecc--cc-----eeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885        168 MGYIMQRRES--SL-----KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA  240 (327)
Q Consensus       168 ~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  240 (327)
                      ...+......  .+     ......+++.+.++.+.++.......++.++.......+.. ........ . .....+.+
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i-~~~~~~~~-~-~~~~d~S~  177 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHI-SKDKALQR-Q-FTLDDVSG  177 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEE-EECHHHHH-T-CCSSCCCE
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceee-ecchhhcc-c-cccCCcee
Confidence            4321111111  11     00124567777777777766665556655551110000100 00000000 0 00113578


Q ss_pred             EEEecCCC-eEEEecCCCeEEEEeCCCceeeeec--Cc-C------CcceEEEEECCCCCEEEEEEccccccCCCCCCCC
Q psy11885        241 ISFHQEYN-TFATGGSDGYVNIWDGFNKKRLCQF--HR-Y------DTGITSLCFSYDGNVLAIACSYNYELETPPDPIP  310 (327)
Q Consensus       241 v~~spd~~-~lasgs~dg~i~iWd~~~~~~~~~~--~~-~------~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~  310 (327)
                      ++++|... +++....++.+.++|.. ++.+..+  .. .      -..--.|+|.|+|+.++++              +
T Consensus       178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs--------------E  242 (255)
T 3qqz_A          178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS--------------E  242 (255)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE--------------T
T ss_pred             EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc--------------C
Confidence            99999655 45566667889999965 4544332  21 1      0123679999999977765              6


Q ss_pred             CCcEEEEE
Q psy11885        311 PNNIFIRH  318 (327)
Q Consensus       311 ~~~~~~~~  318 (327)
                      +|.+|.|.
T Consensus       243 ~n~~y~f~  250 (255)
T 3qqz_A          243 PNRFYRFT  250 (255)
T ss_dssp             TTEEEEEE
T ss_pred             CceEEEEE
Confidence            67777763

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.69  E-value=0.043  Score=53.02  Aligned_cols=270  Identities=11%  Similarity=0.063  Sum_probs=144.6

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec---------------CCCceeeEEEeCCceEEEEecCCc
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA---------------HSDPVLDCCFQDAVHSFSGGLDCT   79 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------h~~~v~~~~~~~~~~~~sgs~Dg~   79 (327)
                      ...|.++...+++  .|..|...+-|.++|..+++......               ....|.++..-....+..|..++-
T Consensus       257 ~~~i~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDN--KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTS--EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSC
T ss_pred             CceEEEEEECCCC--CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCe
Confidence            4679999988743  35556665668889988766322111               123566666544456777877888


Q ss_pred             EEEEEcCCCceeeee-------c---CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee----CCCcEEEEe
Q psy11885         80 LKMFDFNTQTETVIG-------T---HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT----QPDKVFTMS  145 (327)
Q Consensus        80 i~vwd~~~~~~~~~~-------~---h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~----~~~~~~~~~  145 (327)
                      |..++..+.....+.       .   ....|.++...++|+ |..|+.++.|..||..+++......    ....+.++.
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~  413 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL  413 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred             EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence            999987765433221       0   235689998887775 5567767779999986543322111    123455555


Q ss_pred             cC-CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee
Q psy11885        146 LC-GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC  224 (327)
Q Consensus       146 ~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  224 (327)
                      .+ ...+.+|+.++-+..+|.++.+...............++...+ ...+.+++. +....  ++....  .... +. 
T Consensus       414 ~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~-~Gl~~--~~~~~~--~~~~-~~-  485 (781)
T 3v9f_A          414 KDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWIGTH-AGVFV--IDLASK--KVIH-HY-  485 (781)
T ss_dssp             ECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEEEET-TEEEE--EESSSS--SCCE-EE-
T ss_pred             ECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEEEEC-CceEE--EeCCCC--eEEe-cc-
Confidence            44 4457778887788889886543211110000011123332222 234455554 33332  332211  1100 00 


Q ss_pred             eeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC---c-CCcceEEEEECCCCCEEEEEEcccc
Q psy11885        225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH---R-YDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       225 h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~---~-~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                       ....... ....|.++...++|.+.+.. .++-+..||..+++. ..+.   + ....|.++...++|++.+.+ ..++
T Consensus       486 -~~~~~~~-~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Gl  560 (781)
T 3v9f_A          486 -DTSNSQL-LENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGL  560 (781)
T ss_dssp             -CTTTSSC-SCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEE
T ss_pred             -cCccccc-ccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCc
Confidence             0000000 01247788888888776654 333477788765432 2222   1 13468999999999876544 3444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.50  E-value=0.0049  Score=57.55  Aligned_cols=55  Identities=16%  Similarity=0.150  Sum_probs=41.4

Q ss_pred             CCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEEEEeCCCeEEEEECCCCccce
Q psy11885        118 DTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIM  172 (327)
Q Consensus       118 d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~  172 (327)
                      ++.|..||+.+++.+++.......  ..+...+..+++++.|+.++.||.++++.+-
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW  521 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW  521 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence            688999999999988876543221  1223346778889999999999999987653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.49  E-value=0.017  Score=54.70  Aligned_cols=107  Identities=10%  Similarity=0.089  Sum_probs=66.3

Q ss_pred             eEEEe--CCceEEEEecCC-----------cEEEEEcCCCceee---ee-cCCccEEEEEEeCCCCEEEEEEC-CCeEEE
Q psy11885         62 DCCFQ--DAVHSFSGGLDC-----------TLKMFDFNTQTETV---IG-THDQPIRAVEYSDEVNCILTGSW-DTSVKM  123 (327)
Q Consensus        62 ~~~~~--~~~~~~sgs~Dg-----------~i~vwd~~~~~~~~---~~-~h~~~V~~l~~~~~~~~l~sgs~-d~~i~l  123 (327)
                      .+++.  ++..++.|+.+.           .+.+||..++.-..   +. .+.....++++..+++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            34443  666777777543           57889988765322   11 23333345677789999999884 568999


Q ss_pred             EeCCCCceeeeeeCC---CcEEEEe-cCCCeEEEEe-CC-----CeEEEEECCCC
Q psy11885        124 WDPRSSRCVGNYTQP---DKVFTMS-LCGEKFVVGT-AG-----RKVCIWDLRNM  168 (327)
Q Consensus       124 wdl~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~-~d-----~~v~iwD~~~~  168 (327)
                      ||+.+++....-..+   ....... .++..++.|+ .+     ..+.+||..+.
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            999877644321111   1122233 3677777777 33     57999998764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=0.061  Score=48.12  Aligned_cols=149  Identities=13%  Similarity=0.093  Sum_probs=91.1

Q ss_pred             CCeeEEEEec-CCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC-C----cEEEEEcCCC
Q psy11885         16 DGITAVKFAP-NSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD-C----TLKMFDFNTQ   88 (327)
Q Consensus        16 ~~I~~i~fs~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D-g----~i~vwd~~~~   88 (327)
                      .....|+|+| +++ .|.++...+.|+.+|..++++............+++. ++..++.+... +    .+...+.+..
T Consensus       137 ~~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~  215 (430)
T 3tc9_A          137 GGAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG  215 (430)
T ss_dssp             SCCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred             CCCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence            3557899998 344 4555554589999999888766555444456788885 66656665542 2    2333343322


Q ss_pred             ce--eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeeeCC----CcEEEEecCCCeEEEE-eCCCeE
Q psy11885         89 TE--TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYTQP----DKVFTMSLCGEKFVVG-TAGRKV  160 (327)
Q Consensus        89 ~~--~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~d~~v  160 (327)
                      ..  ..+.. ......++++| ++..+++-...++|..+|..++.........    ...+++++.++.++++ ...+.|
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            11  12222 12346788999 6666666667789999999876542222221    2346778888855554 566789


Q ss_pred             EEEECC
Q psy11885        161 CIWDLR  166 (327)
Q Consensus       161 ~iwD~~  166 (327)
                      ..+|..
T Consensus       295 ~~~~~d  300 (430)
T 3tc9_A          295 LRSDYD  300 (430)
T ss_dssp             EEEEEE
T ss_pred             EEEeCC
Confidence            998765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.35  E-value=0.076  Score=47.47  Aligned_cols=147  Identities=10%  Similarity=0.035  Sum_probs=81.9

Q ss_pred             eeEEEe--CCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECC-C----eEEEEeCCCCcee-
Q psy11885         61 LDCCFQ--DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWD-T----SVKMWDPRSSRCV-  132 (327)
Q Consensus        61 ~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d-~----~i~lwdl~~~~~~-  132 (327)
                      ..+++.  +...++.+...+.|+.+|++++....+.........|+++++++.|+.+... +    .+..++. .+... 
T Consensus       140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~  218 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKV  218 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCS
T ss_pred             CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceee
Confidence            456665  3566776665578889998876654444444557899999999977666542 2    3333443 33221 


Q ss_pred             ----eeeeCCCcEEEEec-CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEE-eecCeEEE
Q psy11885        133 ----GNYTQPDKVFTMSL-CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS-SIEGRAAV  206 (327)
Q Consensus       133 ----~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i  206 (327)
                          ..+..+ ..+++++ .+..+++-..++.|..+|..+............ ..++.+++.++++.+.++ .....+..
T Consensus       219 ~~~l~~~~~p-~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~-~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          219 ITELTKGQNC-NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS-GWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             EEEEEECSSC-CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS-SCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeccCCCc-eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC-CcceeEEEcCCCCEEEEEECCCCEEEE
Confidence                122222 2345666 455455555678899999875432111111111 124567888887744444 33444444


Q ss_pred             EEcc
Q psy11885        207 EYLD  210 (327)
Q Consensus       207 ~~~~  210 (327)
                      ..++
T Consensus       297 ~~~d  300 (430)
T 3tc9_A          297 SDYD  300 (430)
T ss_dssp             EEEE
T ss_pred             EeCC
Confidence            3333

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.31  E-value=0.036  Score=47.21  Aligned_cols=148  Identities=10%  Similarity=0.043  Sum_probs=82.3

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec--C---CCceeeEEEeC-CceEEEEec--------------
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA--H---SDPVLDCCFQD-AVHSFSGGL--------------   76 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--h---~~~v~~~~~~~-~~~~~sgs~--------------   76 (327)
                      .+..+++.++++. |.++...+.|..+|..+++......  .   ......+++.. ...++.+..              
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            5788999973344 4555555668889987665332221  1   12345667643 334443332              


Q ss_pred             ----CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCCCc-----eeeeeeCCCcEEEEec
Q psy11885         77 ----DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRSSR-----CVGNYTQPDKVFTMSL  146 (327)
Q Consensus        77 ----Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~~~-----~~~~~~~~~~~~~~~~  146 (327)
                          ++.|..+|..++....+...-.....++++++++.|+.+ +..++|..|++....     .+..+.. ..-+.++.
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~  238 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA  238 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT
T ss_pred             ccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC
Confidence                256777877655433222111234678999999876655 556899999987521     1111111 12244555


Q ss_pred             CCCeEEEEeC----------CCeEEEEECC
Q psy11885        147 CGEKFVVGTA----------GRKVCIWDLR  166 (327)
Q Consensus       147 ~~~~~~~~~~----------d~~v~iwD~~  166 (327)
                      .|+.+++...          .+.|..+|..
T Consensus       239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             TSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             CCCEEEEecCcccccccCCCccEEEEECCC
Confidence            6664444333          3567777754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.12  E-value=0.11  Score=44.79  Aligned_cols=136  Identities=7%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-----CCc---eEEEEec---CCcEEEEEcC--CCceeeeec
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-----DAV---HSFSGGL---DCTLKMFDFN--TQTETVIGT   95 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-----~~~---~~~sgs~---Dg~i~vwd~~--~~~~~~~~~   95 (327)
                      .+++....++-+.+||+ +|+....... +.++.+..-     .+.   .+++...   +++|++|+++  ++....+..
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            45666667788999999 5554443332 445544431     222   2344443   5789999874  333222211


Q ss_pred             ------CC-ccEEEEEE--eCC-CC-EEEEEECCCeEEEEeCC-------CCceeeeeeCCCcEEEEec--CCCeEEEEe
Q psy11885         96 ------HD-QPIRAVEY--SDE-VN-CILTGSWDTSVKMWDPR-------SSRCVGNYTQPDKVFTMSL--CGEKFVVGT  155 (327)
Q Consensus        96 ------h~-~~V~~l~~--~~~-~~-~l~sgs~d~~i~lwdl~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  155 (327)
                            .. ..+..+|+  ++. +. +++....++.+..|++.       +++.++++........+..  ....++++-
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~e  198 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAE  198 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEec
Confidence                  11 44566777  664 43 57888889999999882       3355677776655544433  456888888


Q ss_pred             CCCeEEEEECC
Q psy11885        156 AGRKVCIWDLR  166 (327)
Q Consensus       156 ~d~~v~iwD~~  166 (327)
                      ++.-|-.+|.+
T Consensus       199 Ed~GIw~~da~  209 (355)
T 3amr_A          199 EDEAIWKFSAE  209 (355)
T ss_dssp             TTTEEEEEECS
T ss_pred             ccceEEEEeCC
Confidence            88766666654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.09  E-value=0.091  Score=43.28  Aligned_cols=151  Identities=10%  Similarity=0.091  Sum_probs=89.7

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC--CceeeEEEe-CCceEEEEecCCcEEEEEcCCCce--
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS--DPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE--   90 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~--~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~--   90 (327)
                      +++..++|+|+++.++++...++.|...|.. +++.......  ...-.+++. ++..+++.-.++.+.++++.....  
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence            5799999999766666777788899999998 6654433221  234455664 444445544567788887765431  


Q ss_pred             --eee--e----cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC---CceeeeeeC----------CCcEEEEecC-C
Q psy11885         91 --TVI--G----THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS---SRCVGNYTQ----------PDKVFTMSLC-G  148 (327)
Q Consensus        91 --~~~--~----~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~---~~~~~~~~~----------~~~~~~~~~~-~  148 (327)
                        ...  .    ..+...-.|+|+++++.|+++.......+|....   ...+.....          .-..+++.+. +
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg  185 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN  185 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred             eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence              111  1    1234568999999998888877655555555431   111111110          1123445554 3


Q ss_pred             CeEEEEeCCCeEEEEECCC
Q psy11885        149 EKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus       149 ~~~~~~~~d~~v~iwD~~~  167 (327)
                      ..++.+..++.+-.+|...
T Consensus       186 ~lliLS~~s~~L~~~d~~g  204 (255)
T 3qqz_A          186 TLLVLSHESRALQEVTLVG  204 (255)
T ss_dssp             EEEEEETTTTEEEEECTTC
T ss_pred             eEEEEECCCCeEEEEcCCC
Confidence            3455556667788888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.04  E-value=0.15  Score=44.81  Aligned_cols=206  Identities=7%  Similarity=-0.028  Sum_probs=106.7

Q ss_pred             CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEE-EEECCCeEEEEeCCCCceeeeeeC---CCcEEEEecCCCeEE
Q psy11885         77 DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWDPRSSRCVGNYTQ---PDKVFTMSLCGEKFV  152 (327)
Q Consensus        77 Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-sgs~d~~i~lwdl~~~~~~~~~~~---~~~~~~~~~~~~~~~  152 (327)
                      ...|+..++.......+......+..++|++..+.|+ +-...+.|+.+++..+.....+..   ...-+++.+.+..++
T Consensus        95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY  174 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY  174 (386)
T ss_dssp             BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEE
T ss_pred             CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEE
Confidence            4678888887665443333334578899997666555 445678999999876543222221   112356665555544


Q ss_pred             -EEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCC
Q psy11885        153 -VGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDG  231 (327)
Q Consensus       153 -~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~  231 (327)
                       +-...+.|.+.++...... ......+ ..++.+++.|....+..+.......|+.++..........        ..+
T Consensus       175 ~~d~~~~~I~~~~~dg~~~~-~l~~~~l-~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--------~~~  244 (386)
T 3v65_B          175 WTDSGTSRIEVANLDGAHRK-VLLWQSL-EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA--------DTH  244 (386)
T ss_dssp             EEETTTTEEEECBTTSCSCE-EEECSSC-SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--------CSS
T ss_pred             EEcCCCCeEEEEeCCCCceE-EeecCCC-CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE--------ECC
Confidence             4455678888887643211 1111111 1245666666554444433322133333332211111000        001


Q ss_pred             eeeEEEeeEEEEecCCCeEEEe-cCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        232 IEKIYPVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       232 ~~~~~~v~~v~~spd~~~lasg-s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                         ....+.++++|++..|..+ +..+.|..+|+....+...+.........|++. .+ .|..+..
T Consensus       245 ---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~  306 (386)
T 3v65_B          245 ---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDW  306 (386)
T ss_dssp             ---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEET
T ss_pred             ---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEeeC
Confidence               1135789999877666544 456789999976433222222122234677873 33 4444433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.93  E-value=0.11  Score=49.99  Aligned_cols=113  Identities=11%  Similarity=0.055  Sum_probs=65.3

Q ss_pred             cEEEEEEe-CCCCEEEEEE-CC----CeEEEEeCCCC-ceeee-eeCCCcEEEEecCCCeEEEEeCC-----CeEEEEEC
Q psy11885         99 PIRAVEYS-DEVNCILTGS-WD----TSVKMWDPRSS-RCVGN-YTQPDKVFTMSLCGEKFVVGTAG-----RKVCIWDL  165 (327)
Q Consensus        99 ~V~~l~~~-~~~~~l~sgs-~d----~~i~lwdl~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~d-----~~v~iwD~  165 (327)
                      .+....|| |||++|+-+. .+    .+|+++|+.++ +.+.. +........++++++.|+....+     ..|.++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            57889999 9999887443 33    25999999988 63321 22212235677788887776654     26888888


Q ss_pred             CCCccc--eeeecccceeeeEEeEEeeCCCceEEEeec-CeEEEEEccCC
Q psy11885        166 RNMGYI--MQRRESSLKFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTG  212 (327)
Q Consensus       166 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~  212 (327)
                      .+....  .......... .....++++++.++..+.. ....++.++..
T Consensus       255 gt~~~~~~lv~~~~~~~~-~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          255 GKLQSEDVCLYEEHNPLF-SAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             TSCGGGCEEEEECCCTTC-EEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             CCCchhcEEEEecCCCce-EEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            764311  1000011111 2345677777766655433 34556665543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.93  E-value=0.16  Score=43.40  Aligned_cols=148  Identities=5%  Similarity=0.019  Sum_probs=94.7

Q ss_pred             EEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecC-----CC--ceeeEEE----eCCceEEEEe------------
Q psy11885         20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAH-----SD--PVLDCCF----QDAVHSFSGG------------   75 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h-----~~--~v~~~~~----~~~~~~~sgs------------   75 (327)
                      +++|++..+.++++.-..++|..||..++... .....     ..  .+..+.+    .++..++...            
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~   96 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS   96 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence            68999865555555447899999999866432 22222     11  2456777    3433333322            


Q ss_pred             -cCCcEEEEEcC---CCceee---eecC----------C-ccEEEEEEeCCCCEEEEEECC-CeEEEEeCCCCceeeee-
Q psy11885         76 -LDCTLKMFDFN---TQTETV---IGTH----------D-QPIRAVEYSDEVNCILTGSWD-TSVKMWDPRSSRCVGNY-  135 (327)
Q Consensus        76 -~Dg~i~vwd~~---~~~~~~---~~~h----------~-~~V~~l~~~~~~~~l~sgs~d-~~i~lwdl~~~~~~~~~-  135 (327)
                       .+..+..+|+.   +++...   +...          . .....++..++|+..++++.- +.|...+.........+ 
T Consensus        97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~  176 (334)
T 2p9w_A           97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW  176 (334)
T ss_dssp             SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE
T ss_pred             CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee
Confidence             15778899998   554432   1111          1 247899999999999999988 88888886543222111 


Q ss_pred             eCC-------CcEEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885        136 TQP-------DKVFTMSLCGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus       136 ~~~-------~~~~~~~~~~~~~~~~~~d~~v~iwD~~~  167 (327)
                      ..+       -.-+.+.+++..|++...++.+..+|++.
T Consensus       177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            111       12467788898888887799999999884

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.92  E-value=0.43  Score=48.22  Aligned_cols=180  Identities=13%  Similarity=0.142  Sum_probs=99.3

Q ss_pred             CCCeeEEEEecCC-----CcEEEEEEC-CCcEEEEECCCCeEEEEecC--CCceeeEEE---eCCceEEEEecCCcEEEE
Q psy11885         15 EDGITAVKFAPNS-----NQFLLASSW-DCNVSLYDITNNNLRLKYAH--SDPVLDCCF---QDAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        15 ~~~I~~i~fs~~~-----~~~l~s~~~-d~~i~iwd~~~~~~~~~~~h--~~~v~~~~~---~~~~~~~sgs~Dg~i~vw   83 (327)
                      +++|.|+++.|..     ..++++|.. |++|+|+++.+-+......-  .....++++   ....+++.|-.||.+..+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            4579999998642     368999997 99999999987664433332  223445544   234577888889998776


Q ss_pred             EcCC--Cce-----eeeecCCccEEEEEEeCCCCE-EEEEECCCeEEEEeCCCCceee-eeeCCC--cEEEEec--CCCe
Q psy11885         84 DFNT--QTE-----TVIGTHDQPIRAVEYSDEVNC-ILTGSWDTSVKMWDPRSSRCVG-NYTQPD--KVFTMSL--CGEK  150 (327)
Q Consensus        84 d~~~--~~~-----~~~~~h~~~V~~l~~~~~~~~-l~sgs~d~~i~lwdl~~~~~~~-~~~~~~--~~~~~~~--~~~~  150 (327)
                      .++.  +..     ..++  ..++.-..+...+.. ++..+ +....++.-+ ++... .+....  ....+..  +++.
T Consensus       633 ~~d~~tg~l~d~r~~~LG--~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g  708 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLG--TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDS  708 (1158)
T ss_dssp             EECTTTCCEEEEEEEECC--SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTE
T ss_pred             EEcCCCCccccceeEEcC--CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCc
Confidence            6543  221     1222  345554445444433 33333 3444444432 22211 111111  1122221  3555


Q ss_pred             EEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee
Q psy11885        151 FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI  200 (327)
Q Consensus       151 ~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (327)
                      ++..+ ++.++|.-+...... ..+.-.+...++.++.+|..+.+++...
T Consensus       709 ~v~~~-~~~LrI~~i~~~~~~-~~~~ipL~~Tprri~y~~~~~~~~v~~~  756 (1158)
T 3ei3_A          709 LALAN-NSTLTIGTIDEIQKL-HIRTVPLYESPRKICYQEVSQCFGVLSS  756 (1158)
T ss_dssp             EEEEC-SSCEEEEEECCSSSE-EEEEEECSSEEEEEEEEGGGTEEEEEEE
T ss_pred             EEEEc-CCceEEEEecccCCe-eEEEEeCCCCceEEEEcCCCCEEEEEEE
Confidence            66544 556998877554322 2233345556788888888777666553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.80  E-value=0.39  Score=46.43  Aligned_cols=207  Identities=9%  Similarity=-0.078  Sum_probs=105.2

Q ss_pred             CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEE-EEECCCeEEEEeCCCCc----eeeeee---CCCcEEEEecCC
Q psy11885         77 DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWDPRSSR----CVGNYT---QPDKVFTMSLCG  148 (327)
Q Consensus        77 Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-sgs~d~~i~lwdl~~~~----~~~~~~---~~~~~~~~~~~~  148 (327)
                      ...|+..++.......+......+..|+|++..+.|+ +-...++|+.+++....    ....+.   ....-+++.+.+
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~  482 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  482 (791)
T ss_dssp             BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence            4578888887655444333345678899998655555 44556889999987531    111122   112346677666


Q ss_pred             CeEEE-EeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee
Q psy11885        149 EKFVV-GTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI  227 (327)
Q Consensus       149 ~~~~~-~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~  227 (327)
                      ..|+. -...+.|.+.|+...... ......+. .++.+++.|....+..+.......|+..+.........  +.    
T Consensus       483 ~~LY~tD~~~~~I~v~~ldG~~~~-~l~~~~l~-~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l--v~----  554 (791)
T 3m0c_C          483 SNIYWTDSVLGTVSVADTKGVKRK-TLFRENGS-KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--VT----  554 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEE-EEEECTTC-CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE--EC----
T ss_pred             CcEEEEecCCCeEEEEeCCCCeEE-EEEeCCCC-CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE--Ee----
Confidence            55554 456678999998754321 11111221 24667776654444443322212232232221111100  00    


Q ss_pred             ccCCeeeEEEeeEEEEecCCCeEEEe-cCCCeEEEEeCCCceeeeecCcC--CcceEEEEECCCCCEEEEEEcc
Q psy11885        228 KEDGIEKIYPVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRY--DTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       228 ~~~~~~~~~~v~~v~~spd~~~lasg-s~dg~i~iWd~~~~~~~~~~~~~--~~~v~~l~fspdg~~la~~~~~  298 (327)
                        ..   ....+.|+++|....|..+ ...+.|...++....+...+...  -....+|++.  +.+|..+...
T Consensus       555 --~~---l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~  621 (791)
T 3m0c_C          555 --EN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDII  621 (791)
T ss_dssp             --SS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred             --CC---CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECC
Confidence              01   1136789999877766655 44578999987543332222211  1123466663  4456555443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.78  E-value=0.24  Score=43.42  Aligned_cols=240  Identities=10%  Similarity=0.006  Sum_probs=126.6

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceeee-
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETVI-   93 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~~-   93 (327)
                      +-+|.+..+ . .+|+.+ ....|+..++.+.+..........+..++|. ....++ +-...+.|..+++++.....+ 
T Consensus        78 ~~~C~~~~~-~-~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           78 RRSCKALGP-E-PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             SSCEEECSS-C-CEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred             CCeECCccc-c-ceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence            345655555 2 344433 3467888998876644444333456778885 455555 545568899999887654332 


Q ss_pred             ecCCccEEEEEEeCCCCEE-EEEECCCeEEEEeCCCCceeeeeeC-CC--cEEEEecCCCeEEEEe-CC-CeEEEEECCC
Q psy11885         94 GTHDQPIRAVEYSDEVNCI-LTGSWDTSVKMWDPRSSRCVGNYTQ-PD--KVFTMSLCGEKFVVGT-AG-RKVCIWDLRN  167 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~~~l-~sgs~d~~i~lwdl~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~-~d-~~v~iwD~~~  167 (327)
                      .........+++++.+..| ++-...+.|.+.++........+.. ..  .-+++++.+..++... .. +.|...|+..
T Consensus       155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            2222334678888755555 4555678899999865432222221 11  2345565555555443 33 6788888865


Q ss_pred             CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885        168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY  247 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~  247 (327)
                      .... ......+. .++.+++.+....+..+..... .|+.++.........  +.      .+..   ....+++ ..+
T Consensus       235 ~~~~-~~~~~~~~-~PnGlavd~~~~~lY~aD~~~~-~I~~~d~dG~~~~~~--~~------~~~~---~P~giav-~~~  299 (386)
T 3v65_B          235 SGRR-IIADTHLF-WPNGLTIDYAGRRMYWVDAKHH-VIERANLDGSHRKAV--IS------QGLP---HPFAITV-FED  299 (386)
T ss_dssp             CSCE-EEECSSCS-CEEEEEEEGGGTEEEEEETTTT-EEEEECTTSCSCEEE--EC------SSCS---SEEEEEE-ETT
T ss_pred             CCcE-EEEECCCC-CeeeEEEeCCCCEEEEEECCCC-EEEEEeCCCCeeEEE--EE------CCCC---CceEEEE-ECC
Confidence            3221 11111111 2456677665544444433222 233333221111100  00      0111   2346677 345


Q ss_pred             CeEEEecCCCeEEEEeCCCceeeeecC
Q psy11885        248 NTFATGGSDGYVNIWDGFNKKRLCQFH  274 (327)
Q Consensus       248 ~~lasgs~dg~i~iWd~~~~~~~~~~~  274 (327)
                      ..+.+-...+.|..++..+++.+..+.
T Consensus       300 ~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          300 SLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            566666677889888866666555543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.73  E-value=0.3  Score=43.64  Aligned_cols=205  Identities=11%  Similarity=0.050  Sum_probs=100.9

Q ss_pred             eeEEEeC---CceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCC-----eEEEEeCCCCc--
Q psy11885         61 LDCCFQD---AVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDT-----SVKMWDPRSSR--  130 (327)
Q Consensus        61 ~~~~~~~---~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~-----~i~lwdl~~~~--  130 (327)
                      ..+++..   ...|+.+...+.|+.+|..++....+.........++++++|+ |+.+...+     .+...+...+.  
T Consensus       142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~  220 (433)
T 4hw6_A          142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTE  220 (433)
T ss_dssp             CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCC
T ss_pred             ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeec
Confidence            4566643   3566666555889999987766554444445578999999999 55544322     23333322111  


Q ss_pred             --eeeeeeCCCcEEEEec-CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee-cCeEEE
Q psy11885        131 --CVGNYTQPDKVFTMSL-CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAV  206 (327)
Q Consensus       131 --~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i  206 (327)
                        .+..+..+ .-+++++ .+..+++-..++.|+.+|..++.................+++.++++.+.++.. ...+..
T Consensus       221 ~~~~~~~~~P-~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~  299 (433)
T 4hw6_A          221 RLSLCNARGA-KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYR  299 (433)
T ss_dssp             EEEEEECSSB-CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             cccccccCCC-CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEE
Confidence              11111122 1244555 444444444667899999875432111111000011134677777764444433 333333


Q ss_pred             EEccCCcccccceeeeeeeeeccCCe-------eeEEEeeEEEE---------ecCCCeEEEecCCCeEEEEeCCCcee
Q psy11885        207 EYLDTGPEMQKMKYAFKCHRIKEDGI-------EKIYPVNAISF---------HQEYNTFATGGSDGYVNIWDGFNKKR  269 (327)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~v~~v~~---------spd~~~lasgs~dg~i~iWd~~~~~~  269 (327)
                      ..++...........+... ....+.       ........+++         .+++.++++-...+.|+.++. ++..
T Consensus       300 ~~~d~~~~~~~~~~~~ag~-~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v  376 (433)
T 4hw6_A          300 VDYNRETGKLAVPYIVCGQ-HSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV  376 (433)
T ss_dssp             EEBCTTTCCBCCCEEEEEC-TTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE
T ss_pred             EeCCCCCcccCcEEEEEec-CCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE
Confidence            3333211100000011000 000000       01113456888         677777777777889999984 4543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.69  E-value=0.025  Score=53.97  Aligned_cols=150  Identities=9%  Similarity=0.044  Sum_probs=81.7

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCC----CeEEEEecC-CCceeeEEEe--CCceEEEEecCCcEEEEEcCCC
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITN----NNLRLKYAH-SDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~h-~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      ..+.+|+|++.++.++++-...+.|+.+++.+    ......... -.....+++.  .+...++-...+.|.+.+++..
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            46678999986554445444568899999875    221111111 1123455653  3344445455788999998766


Q ss_pred             ceeeee-cCCccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeee----eeCCCcEEEEecCCCeEEEE-eCCCeE
Q psy11885         89 TETVIG-THDQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGN----YTQPDKVFTMSLCGEKFVVG-TAGRKV  160 (327)
Q Consensus        89 ~~~~~~-~h~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~d~~v  160 (327)
                      ....+. ........|+++|.+..|+.+..  .++|..+++........    +..+ .-+++++.+..|+.+ +..+.|
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P-nGlavd~~~~~LY~aD~~~~~I  564 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP-NGITLDLLSGRLYWVDSKLHSI  564 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC-CCEEECTTTCCEEEEETTTTEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc-cEEEEeccCCEEEEEecCCCeE
Confidence            544332 22234577888886655554433  26788877653221111    1111 235566555554444 344567


Q ss_pred             EEEECC
Q psy11885        161 CIWDLR  166 (327)
Q Consensus       161 ~iwD~~  166 (327)
                      ..+|+.
T Consensus       565 ~~~d~d  570 (699)
T 1n7d_A          565 SSIDVN  570 (699)
T ss_dssp             EEECSS
T ss_pred             EEEccC
Confidence            777664

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.65  E-value=0.28  Score=42.37  Aligned_cols=206  Identities=7%  Similarity=-0.038  Sum_probs=107.0

Q ss_pred             CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCCCceeeeeeC---CCcEEEEecCCCeE-
Q psy11885         77 DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRSSRCVGNYTQ---PDKVFTMSLCGEKF-  151 (327)
Q Consensus        77 Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~~---~~~~~~~~~~~~~~-  151 (327)
                      ...|+..+++......+......+..++|++..+.|+-. ...+.|..+++..+.....+..   ...-+++.+.+..+ 
T Consensus        52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly  131 (349)
T 3v64_C           52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY  131 (349)
T ss_dssp             BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEE
T ss_pred             ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEE
Confidence            456888888765544333333447899999766666544 5678999999876543222221   12345666655554 


Q ss_pred             EEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCC
Q psy11885        152 VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDG  231 (327)
Q Consensus       152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~  231 (327)
                      ++-...+.|.+.++...... ......+ ..++.+++.|....+..+.......|+.++..........        ..+
T Consensus       132 ~~d~~~~~I~~~~~dG~~~~-~l~~~~l-~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--------~~~  201 (349)
T 3v64_C          132 WTDSGTSRIEVANLDGAHRK-VLLWQSL-EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA--------DTH  201 (349)
T ss_dssp             EEETTTTEEEEEETTSCSCE-EEECTTC-SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC--------CSS
T ss_pred             EEcCCCCeEEEEcCCCCceE-EEEeCCC-CCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE--------ECC
Confidence            44455678999998754211 1111112 1246667776554444333322123333332211111000        001


Q ss_pred             eeeEEEeeEEEEecCCCeEEEe-cCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        232 IEKIYPVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       232 ~~~~~~v~~v~~spd~~~lasg-s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                         ....+.++++|++..|..+ +..+.|..+|.....+...+.........|++. ++ .|..+..
T Consensus       202 ---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~  263 (349)
T 3v64_C          202 ---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDW  263 (349)
T ss_dssp             ---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEET
T ss_pred             ---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecC
Confidence               1135789999877766544 456789999976433222222212234677773 33 4444443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.64  E-value=0.34  Score=43.25  Aligned_cols=148  Identities=12%  Similarity=0.090  Sum_probs=88.3

Q ss_pred             CCeeEEEEecC--CCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCC----c-EEEEEcCC
Q psy11885         16 DGITAVKFAPN--SNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDC----T-LKMFDFNT   87 (327)
Q Consensus        16 ~~I~~i~fs~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg----~-i~vwd~~~   87 (327)
                      .....|+|+|+  ++. |..+...+.|+.+|..++++............+++. ++. ++.+...+    . +...+...
T Consensus       139 ~~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            34678999984  344 444444489999999888876655444457788885 555 66554322    1 22233222


Q ss_pred             Cce--eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeee-eC--C--CcEEEEecCCCeEEEE-eCCC
Q psy11885         88 QTE--TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNY-TQ--P--DKVFTMSLCGEKFVVG-TAGR  158 (327)
Q Consensus        88 ~~~--~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~-~~--~--~~~~~~~~~~~~~~~~-~~d~  158 (327)
                      ...  ..+.. -.....+++++ ++.+.++-..++.|+.+|..+++....+ ..  .  ...+++++.++.|+++ ...+
T Consensus       217 ~~~~~~~~~~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          217 GFTERLSLCN-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             TTCCEEEEEE-CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             Ceeccccccc-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            111  11211 12335678888 6665556566789999999877652222 21  1  1236777888866555 4567


Q ss_pred             eEEEEECC
Q psy11885        159 KVCIWDLR  166 (327)
Q Consensus       159 ~v~iwD~~  166 (327)
                      .|+.+|..
T Consensus       296 ~I~~~~~d  303 (433)
T 4hw6_A          296 CIYRVDYN  303 (433)
T ss_dssp             EEEEEEBC
T ss_pred             EEEEEeCC
Confidence            89998865

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.58  E-value=0.36  Score=42.81  Aligned_cols=204  Identities=11%  Similarity=0.168  Sum_probs=116.3

Q ss_pred             EEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCC--ceeeeecC-
Q psy11885         20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQ--TETVIGTH-   96 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~--~~~~~~~h-   96 (327)
                      +.-.+|. .+.+|.-. ..+++|+|+++.+..........|.-=.|-+...++-.. +..|..|+++..  ..+.+..| 
T Consensus        70 sAIMnP~-~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~  146 (494)
T 1bpo_A           70 SAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (494)
T ss_dssp             EEEECSS-SSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             eeeeCCC-CcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecch
Confidence            4567784 45666544 789999999998865555555667666665454444333 668999999653  33455444 


Q ss_pred             ---CccEEEEEEeCCCCEEEEEE-------CCCeEEEEeCCCCceeeeeeCCCcEE-EEecCCC-----eEEEEeC---C
Q psy11885         97 ---DQPIRAVEYSDEVNCILTGS-------WDTSVKMWDPRSSRCVGNYTQPDKVF-TMSLCGE-----KFVVGTA---G  157 (327)
Q Consensus        97 ---~~~V~~l~~~~~~~~l~sgs-------~d~~i~lwdl~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~---d  157 (327)
                         +..|.....+++.++++..+       -.|.+++|..+.+. -+.++++...+ .+...|+     .+..+..   .
T Consensus       147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g  225 (494)
T 1bpo_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (494)
T ss_dssp             GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred             hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence               34677777888999876322       23677899876543 23344433222 2222322     1222222   2


Q ss_pred             CeEEEEECCCCccceeeecccceeeeEEeE-EeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIK-CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      +.++|-++....      ...-+++.+.+. ++|..                                       ....+
T Consensus       226 ~kLhi~Ei~~~~------~~~~~f~kk~vdv~fppe---------------------------------------~~~DF  260 (494)
T 1bpo_A          226 GKLHIIEVGTPP------TGNQPFPKKAVDVFFPPE---------------------------------------AQNDF  260 (494)
T ss_dssp             CEEEEEECSCCC------TTCCCCCCEEEECCCCTT---------------------------------------STTCC
T ss_pred             cEEEEEEcCCCc------cCCCCccceeeeeeCCcc---------------------------------------cccCc
Confidence            567777664320      000001101110 00000                                       00012


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~  273 (327)
                      || ++..|+....+..-..-|.|.+||++++..+..-
T Consensus       261 Pv-amqvs~kygviyviTK~G~i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          261 PV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (494)
T ss_dssp             EE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ee-EEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence            23 4677888888888889999999999999877543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.30  E-value=0.47  Score=40.93  Aligned_cols=239  Identities=11%  Similarity=0.000  Sum_probs=126.7

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceee-
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETV-   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~-   92 (327)
                      ++.+|.+..+ . .+|+.+ ..+.|+..++.+............+..++|. ....++ +-...+.|..+++++..... 
T Consensus        34 d~~~C~~~~~-~-~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  110 (349)
T 3v64_C           34 DRRSCKALGP-E-PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  110 (349)
T ss_dssp             TSSCEEESSS-C-CEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             CCCccccccc-C-ceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence            4556776665 3 344433 3456888888776654444333456778885 455555 44557889999988765433 


Q ss_pred             eecCCccEEEEEEeCCCCEE-EEEECCCeEEEEeCCCCceeeeeeC-CC--cEEEEecCCCeEEEE-eCC-CeEEEEECC
Q psy11885         93 IGTHDQPIRAVEYSDEVNCI-LTGSWDTSVKMWDPRSSRCVGNYTQ-PD--KVFTMSLCGEKFVVG-TAG-RKVCIWDLR  166 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l-~sgs~d~~i~lwdl~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~-~~d-~~v~iwD~~  166 (327)
                      +.........+++.+.+..| ++-...+.|.+.++........+.. ..  .-+++++.+..++.. ... +.|...++.
T Consensus       111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d  190 (349)
T 3v64_C          111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  190 (349)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence            22222345678888755555 4555678999999865432222211 11  234566545554444 344 788888887


Q ss_pred             CCccceeeecccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        167 NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      ..... ......+. .++.+++.+....+..+.. .+.+.....+..  ......  .      ....   ....+++ .
T Consensus       191 G~~~~-~~~~~~~~-~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~--~~~~~~--~------~~~~---~P~giav-~  254 (349)
T 3v64_C          191 GSGRR-IIADTHLF-WPNGLTIDYAGRRMYWVDAKHHVIERANLDGS--HRKAVI--S------QGLP---HPFAITV-F  254 (349)
T ss_dssp             SCSCE-ESCCSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEE--C------SSCS---SEEEEEE-E
T ss_pred             CCCcE-EEEECCCC-CcceEEEeCCCCEEEEEECCCCEEEEEeCCCC--ceEEEE--e------CCCC---CceEEEE-E
Confidence            53211 11111111 2456777765554444433 333333223221  111100  0      0011   2345666 3


Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885        246 EYNTFATGGSDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd~~~~~~~~~~  273 (327)
                      .+..+.+-...+.|...+..+++.+..+
T Consensus       255 ~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          255 EDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            4555666666788888886666554444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.25  E-value=0.47  Score=40.50  Aligned_cols=160  Identities=9%  Similarity=0.106  Sum_probs=89.2

Q ss_pred             EEEEEEeCCCCEEEEEE-CCCeEEEEeCCCCceeee-eeC-----CC--cEEEEec---C-CCeEEEEeC----------
Q psy11885        100 IRAVEYSDEVNCILTGS-WDTSVKMWDPRSSRCVGN-YTQ-----PD--KVFTMSL---C-GEKFVVGTA----------  156 (327)
Q Consensus       100 V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~~~~~~~-~~~-----~~--~~~~~~~---~-~~~~~~~~~----------  156 (327)
                      -.+++|++....++.++ ..++|..||...+..... +..     ..  ....+..   + ..+|+++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            45678988666666666 789999999975533222 221     00  2234444   2 234444332          


Q ss_pred             ----CCeEEEEECC---CCccceeeeccc-----------ceeeeEEeEEeeCCCceEEEeec-CeEEEEEccCCccccc
Q psy11885        157 ----GRKVCIWDLR---NMGYIMQRRESS-----------LKFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQK  217 (327)
Q Consensus       157 ----d~~v~iwD~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~  217 (327)
                          ++.|..+|+.   +.+.+.......           ......-++..+.++.+++.+.. +.+  +.++..... .
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I--~rV~pdG~~-~  171 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI--ARVSADGKT-V  171 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE--EEECTTSCC-E
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeE--EEEeCCCCE-E
Confidence                5779999998   555443222111           11124556666777888877766 443  333332210 0


Q ss_pred             ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCc
Q psy11885        218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK  267 (327)
Q Consensus       218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~  267 (327)
                      ..+... ....    ......+.|+++|++..|++...+|.+..+|+.+.
T Consensus       172 ~~~~~~-~~~~----~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          172 STFAWE-SGNG----GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEEEC-CCCS----SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eeeeec-CCCc----ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            101000 0000    00012568999999999888877999999998754

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.13  E-value=1.4  Score=44.65  Aligned_cols=118  Identities=9%  Similarity=0.057  Sum_probs=71.8

Q ss_pred             cCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE--EecCCCceeeEEEeC-------CceEEEEec-CCc
Q psy11885         10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL--KYAHSDPVLDCCFQD-------AVHSFSGGL-DCT   79 (327)
Q Consensus        10 ~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~h~~~v~~~~~~~-------~~~~~sgs~-Dg~   79 (327)
                      +..+....|.+.+.+.  . +++.++ ++.+.++.+..+++..  ...-...|.|+.+.+       +..++.|.+ |++
T Consensus       508 w~~p~~~~I~~As~n~--~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~t  583 (1158)
T 3ei3_A          508 WKEPQAKNISVASCNS--S-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDIS  583 (1158)
T ss_dssp             ECCTTCCCCCEEEECS--S-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTE
T ss_pred             EECCCCCEEEEEEeCC--C-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCE
Confidence            3334445688887664  3 444444 6788888887666432  223456788888741       357888887 999


Q ss_pred             EEEEEcCCCceeeeecC--CccEEEEEEe--CCCCEEEEEECCCeEEE--EeCCCCce
Q psy11885         80 LKMFDFNTQTETVIGTH--DQPIRAVEYS--DEVNCILTGSWDTSVKM--WDPRSSRC  131 (327)
Q Consensus        80 i~vwd~~~~~~~~~~~h--~~~V~~l~~~--~~~~~l~sgs~d~~i~l--wdl~~~~~  131 (327)
                      |++++++.-.......-  +....++.+.  ....+|..|-.||.+.-  +|..+++.
T Consensus       584 v~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l  641 (1158)
T 3ei3_A          584 ARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLL  641 (1158)
T ss_dssp             EEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCE
T ss_pred             EEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcc
Confidence            99999986443222111  2234444443  23357889999998754  44445543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.86  E-value=0.72  Score=39.21  Aligned_cols=198  Identities=13%  Similarity=0.048  Sum_probs=99.4

Q ss_pred             CCcEEEEEcCCCc--eeeeecCCccEEEEEEeCCCCEEE-EEECCCeEEEEeCCCCceeee-ee-C--CCcEEEEecCCC
Q psy11885         77 DCTLKMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWDPRSSRCVGN-YT-Q--PDKVFTMSLCGE  149 (327)
Q Consensus        77 Dg~i~vwd~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~-sgs~d~~i~lwdl~~~~~~~~-~~-~--~~~~~~~~~~~~  149 (327)
                      ...|+..+++...  ...+......+.+++|++..+.|+ +-...+.|..+++..+..... +. .  ...-+++.+.+.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            4578888887653  222222223466889998655555 545678999999876532111 11 1  122356665444


Q ss_pred             eEE-EEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeec
Q psy11885        150 KFV-VGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK  228 (327)
Q Consensus       150 ~~~-~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~  228 (327)
                      .++ +-...+.|.++|+...... ......+ ..++.+++.|....+..+.......|+.++.........  .      
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~~-~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--~------  161 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRK-VLFWQEL-DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII--I------  161 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCE-EEECSSC-SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE--E------
T ss_pred             eEEEEECCCCEEEEEECCCCcEE-EEEeCCC-CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE--E------
Confidence            444 4456678999998753211 1111112 124566666654443333322122333333221111000  0      


Q ss_pred             cCCeeeEEEeeEEEEecCCCeEEEe-cCCCeEEEEeCCCceeeeecCcCCcceEEEEECC
Q psy11885        229 EDGIEKIYPVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY  287 (327)
Q Consensus       229 ~~~~~~~~~v~~v~~spd~~~lasg-s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp  287 (327)
                      ..+   ....+.++++|++..|..+ +..+.|..+|.....+.............|++..
T Consensus       162 ~~~---l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~  218 (318)
T 3sov_A          162 NSE---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE  218 (318)
T ss_dssp             CSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET
T ss_pred             ECC---CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC
Confidence            001   1135789999977666554 4568899999764322211221122335677743

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.83  E-value=0.53  Score=41.64  Aligned_cols=60  Identities=22%  Similarity=0.278  Sum_probs=41.8

Q ss_pred             EEeeEEEEecC---CCeEEEecCCCeEEEEeCCCce-eeeecC---------cCCcceEEEEECCCCCEEEEE
Q psy11885        236 YPVNAISFHQE---YNTFATGGSDGYVNIWDGFNKK-RLCQFH---------RYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       236 ~~v~~v~~spd---~~~lasgs~dg~i~iWd~~~~~-~~~~~~---------~~~~~v~~l~fspdg~~la~~  295 (327)
                      .+|..+-|||-   +..|++=..|++||+||+.... ....+.         .....|.+++|+++|-.|-..
T Consensus       125 s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl  197 (452)
T 3pbp_A          125 SSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCL  197 (452)
T ss_dssp             CCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEE
T ss_pred             CceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEE
Confidence            36889999995   4689988899999999987521 111121         112457899999987766554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.74  E-value=0.66  Score=47.39  Aligned_cols=106  Identities=8%  Similarity=0.062  Sum_probs=66.7

Q ss_pred             EEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCc--eeeeecC--
Q psy11885         21 VKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT--ETVIGTH--   96 (327)
Q Consensus        21 i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~--~~~~~~h--   96 (327)
                      .-.+|. .+.+|.- ...+++|+|+++.+.......+.+|.-=.|-+...++-.. +..|..|+++...  .+.+..|  
T Consensus        71 AIMnP~-~~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~  147 (1630)
T 1xi4_A           71 AIMNPA-SKVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSS  147 (1630)
T ss_pred             hccCCC-cceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence            445774 3455544 3789999999887754444444566655665554444333 5689999996532  2334344  


Q ss_pred             --CccEEEEEEeCCCCEEEEEE-------CCCeEEEEeCCCC
Q psy11885         97 --DQPIRAVEYSDEVNCILTGS-------WDTSVKMWDPRSS  129 (327)
Q Consensus        97 --~~~V~~l~~~~~~~~l~sgs-------~d~~i~lwdl~~~  129 (327)
                        +..|.....+++.++++..|       -.|.+++|..+.+
T Consensus       148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~  189 (1630)
T 1xi4_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  189 (1630)
T ss_pred             cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence              35677777788888876332       3478888887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.63  E-value=0.98  Score=39.07  Aligned_cols=60  Identities=18%  Similarity=0.130  Sum_probs=38.3

Q ss_pred             EeeEEEEecCCCeEEEecC-----------------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        237 PVNAISFHQEYNTFATGGS-----------------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~-----------------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      ..|.+++.++|++.++...                 .|.|+-+|.  ++......+. ..-+.|+|||||+.|..+.+..
T Consensus       166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l-~~pNGia~spDg~~lYvadt~~  242 (355)
T 3sre_A          166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGF-DFANGINISPDGKYVYIAELLA  242 (355)
T ss_dssp             SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEE-SSEEEEEECTTSSEEEEEEGGG
T ss_pred             CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCC-cccCcceECCCCCEEEEEeCCC
Confidence            4688999999988887641                 245555554  2211111121 2347899999999998887643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.59  E-value=0.86  Score=38.21  Aligned_cols=148  Identities=7%  Similarity=-0.006  Sum_probs=82.8

Q ss_pred             CCeeEEEEecCCCcEEEEEEC-CC-cEEEEECCCCeEEEEecCC--CceeeEEEeCCceEEEE-ecCCcEEEEEcCCCce
Q psy11885         16 DGITAVKFAPNSNQFLLASSW-DC-NVSLYDITNNNLRLKYAHS--DPVLDCCFQDAVHSFSG-GLDCTLKMFDFNTQTE   90 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~-d~-~i~iwd~~~~~~~~~~~h~--~~v~~~~~~~~~~~~sg-s~Dg~i~vwd~~~~~~   90 (327)
                      .....+++++++ +++++... ++ .|..+|..++++.......  .....++...+..++.. ..++.|.++|..++..
T Consensus        72 ~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~  150 (306)
T 2p4o_A           72 GKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG  150 (306)
T ss_dssp             SEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence            467899999965 55554433 22 4667777777754433221  12233443334444444 3578888888765422


Q ss_pred             eee--e---------cCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCC-Cce--eeeee--CCCcEEEEecCCCeEEE
Q psy11885         91 TVI--G---------THDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRS-SRC--VGNYT--QPDKVFTMSLCGEKFVV  153 (327)
Q Consensus        91 ~~~--~---------~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~-~~~--~~~~~--~~~~~~~~~~~~~~~~~  153 (327)
                      ...  .         ..-...+.+  +++++.|+.+ ...++|..+|+.. ++.  ...+.  ....-++++.+|+.+++
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va  228 (306)
T 2p4o_A          151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA  228 (306)
T ss_dssp             EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE
T ss_pred             eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE
Confidence            111  0         011234455  7787766655 5578999999864 321  11111  11223567777866555


Q ss_pred             EeCCCeEEEEECC
Q psy11885        154 GTAGRKVCIWDLR  166 (327)
Q Consensus       154 ~~~d~~v~iwD~~  166 (327)
                      ....+.|.++|..
T Consensus       229 ~~~~~~V~~~~~~  241 (306)
T 2p4o_A          229 THIYNSVVRIAPD  241 (306)
T ss_dssp             CBTTCCEEEECTT
T ss_pred             eCCCCeEEEECCC
Confidence            5567889999875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.56  E-value=0.93  Score=38.35  Aligned_cols=152  Identities=8%  Similarity=0.029  Sum_probs=92.2

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCC----CeEEEEec-CCCceeeEEEe-CCceEE-EEecCCcEEEEEcCC
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITN----NNLRLKYA-HSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNT   87 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~-h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~   87 (327)
                      ...+.+++|++.++.++.+-..++.|+.++..+    ........ .-.....+++. .+..++ +-...+.|.+.+++.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            356789999986555666656678999999876    22222222 11234567774 344454 556678999999876


Q ss_pred             Cceeee-ecCCccEEEEEEeCCCCEEEEEECC--CeEEEEeCCCCceeeeee--C--CCcEEEEecCCCeEEEEe-CCCe
Q psy11885         88 QTETVI-GTHDQPIRAVEYSDEVNCILTGSWD--TSVKMWDPRSSRCVGNYT--Q--PDKVFTMSLCGEKFVVGT-AGRK  159 (327)
Q Consensus        88 ~~~~~~-~~h~~~V~~l~~~~~~~~l~sgs~d--~~i~lwdl~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~-~d~~  159 (327)
                      .....+ .........++++|.+..++.+...  +.|...++... ....+.  .  ...-+++++.+..++.+. ..+.
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~  187 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence            554333 2233456899999877766655543  68888887532 222221  1  112356666666666554 5568


Q ss_pred             EEEEECCC
Q psy11885        160 VCIWDLRN  167 (327)
Q Consensus       160 v~iwD~~~  167 (327)
                      |..+|+..
T Consensus       188 I~~~d~dg  195 (316)
T 1ijq_A          188 ISSIDVNG  195 (316)
T ss_dssp             EEEEETTS
T ss_pred             EEEEecCC
Confidence            99999874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.42  E-value=1.3  Score=39.01  Aligned_cols=155  Identities=8%  Similarity=0.013  Sum_probs=94.0

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC----eEEEEec-CCCceeeEEEe-CCceE-EEEecCCcEEEEEcC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN----NLRLKYA-HSDPVLDCCFQ-DAVHS-FSGGLDCTLKMFDFN   86 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~-h~~~v~~~~~~-~~~~~-~sgs~Dg~i~vwd~~   86 (327)
                      ....+.+|+|++.++.++.+-...+.|+.+++.+.    ....... .-.....+++. .+..+ ++-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34678899999865555555556788999998752    2222222 22345567764 24444 455567889999988


Q ss_pred             CCceeee-ecCCccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeeeeeC---CCcEEEEecCCCeEEEEe-CCCe
Q psy11885         87 TQTETVI-GTHDQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGNYTQ---PDKVFTMSLCGEKFVVGT-AGRK  159 (327)
Q Consensus        87 ~~~~~~~-~~h~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~d~~  159 (327)
                      ......+ .........|+++|.+..|+....  .+.|...++...........   ...-+++++.+..|+.+. ..+.
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~  269 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  269 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence            7654433 323345689999997766665543  37898888864332221111   112456666667776664 4578


Q ss_pred             EEEEECCCC
Q psy11885        160 VCIWDLRNM  168 (327)
Q Consensus       160 v~iwD~~~~  168 (327)
                      |..+|+...
T Consensus       270 I~~~d~dG~  278 (400)
T 3p5b_L          270 ISSIDVNGG  278 (400)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEeCCCC
Confidence            999998653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.33  E-value=1.4  Score=38.82  Aligned_cols=231  Identities=9%  Similarity=-0.028  Sum_probs=120.7

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCC-----ceeeeecCCccEE
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQ-----TETVIGTHDQPIR  101 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~-----~~~~~~~h~~~V~  101 (327)
                      .+|+.+. ...|+..++..............+..++|. ....++ +-...+.|..++++..     ....+........
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            3555443 578999999877644444444567788885 455555 4445678888988752     1223332334567


Q ss_pred             EEEEeCCCCEEE-EEECCCeEEEEeCCCCceeeeeeC-CC--cEEEEecCCCeEEEEeC--CCeEEEEECCCCccceeee
Q psy11885        102 AVEYSDEVNCIL-TGSWDTSVKMWDPRSSRCVGNYTQ-PD--KVFTMSLCGEKFVVGTA--GRKVCIWDLRNMGYIMQRR  175 (327)
Q Consensus       102 ~l~~~~~~~~l~-sgs~d~~i~lwdl~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~--d~~v~iwD~~~~~~~~~~~  175 (327)
                      .|++...++.|+ +-...+.|.+.++........+.. ..  .-+++.+.+..|+....  .+.|...++...... ...
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~-~~~  241 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLV  241 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE-EEE
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE-EEE
Confidence            899987544454 555678999999876543322221 11  23455655555555432  367888888753321 111


Q ss_pred             cccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec
Q psy11885        176 ESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG  254 (327)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs  254 (327)
                      ...+ ..++.+++.+....+..+.. ...+....++.  .......  ..    .....   ....+++. .+..+.+-.
T Consensus       242 ~~~l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~--~~----~~~l~---~P~gl~v~-~~~lywtd~  308 (400)
T 3p5b_L          242 TENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTIL--ED----EKRLA---HPFSLAVF-EDKVFWTDI  308 (400)
T ss_dssp             CSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CCCEEEE--EC----SSTTS---SEEEEEEE-TTEEEEEES
T ss_pred             ECCC-CceEEEEEEeCCCEEEEEECCCCEEEEEeCCC--CccEEEE--eC----CCCCC---CCEEEEEe-CCEEEEecC
Confidence            1111 12456666665554444433 23333322221  1111110  00    00011   12345553 334555666


Q ss_pred             CCCeEEEEeCCCceeeeecC
Q psy11885        255 SDGYVNIWDGFNKKRLCQFH  274 (327)
Q Consensus       255 ~dg~i~iWd~~~~~~~~~~~  274 (327)
                      ..+.|..+|..+++.+..+.
T Consensus       309 ~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          309 INEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             SSCSEEEEESSSCCCCEEEE
T ss_pred             CCCeEEEEEcCCCCceEEEe
Confidence            67888888877776555543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.21  E-value=0.095  Score=50.02  Aligned_cols=177  Identities=8%  Similarity=-0.071  Sum_probs=86.0

Q ss_pred             CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCC----CceeeeeeC---CCcEEEEecCC
Q psy11885         77 DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRS----SRCVGNYTQ---PDKVFTMSLCG  148 (327)
Q Consensus        77 Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~----~~~~~~~~~---~~~~~~~~~~~  148 (327)
                      .+.|+..++++.....+......+..|+|++..+.|+.+ ...++|+.+++..    ......+..   ...-+++.+.+
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            357778887765543332222345688999877666655 4568899999875    222111111   11224445444


Q ss_pred             CeEEE-EeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee
Q psy11885        149 EKFVV-GTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI  227 (327)
Q Consensus       149 ~~~~~-~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~  227 (327)
                      ..|+. -...+.|.+.|+...... ......+ ..++.+++.|....+..+.......|..++.........  .     
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~-~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l--~-----  535 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRK-TLFREQG-SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--V-----  535 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEE-EECCCSS-CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE--S-----
T ss_pred             CcEEEEeccCCeEEEEecCCCceE-EEEeCCC-CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE--E-----
Confidence            44443 345678888888653211 1111111 122444555543333332221112222222211110000  0     


Q ss_pred             ccCCeeeEEEeeEEEEecCCCeEE-EecCCCeEEEEeCCC
Q psy11885        228 KEDGIEKIYPVNAISFHQEYNTFA-TGGSDGYVNIWDGFN  266 (327)
Q Consensus       228 ~~~~~~~~~~v~~v~~spd~~~la-sgs~dg~i~iWd~~~  266 (327)
                       ...   ....+.|+|+|++..|. +-+..+.|..+++..
T Consensus       536 -~~~---l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          536 -TEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             -CSS---CSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             -eCC---CCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence             000   11356899999866554 445567899999764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.11  E-value=2.2  Score=39.97  Aligned_cols=154  Identities=4%  Similarity=-0.056  Sum_probs=90.7

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEE-eCCceEEEEec--CCcEEEEEcCCCcee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCF-QDAVHSFSGGL--DCTLKMFDFNTQTET   91 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~-~~~~~~~sgs~--Dg~i~vwd~~~~~~~   91 (327)
                      .....|++.+.++.++++-...+.|.+.++.+....... ..-.....+++ +.+..++-+.+  .+.|...+++.....
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF  163 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence            467899999866666666667789999999765533333 22234567777 34556665544  356666676654433


Q ss_pred             eee-cCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCCCceeeeee-CCCcEEEEecCCCeEEEEe-CCCeEEEEECCC
Q psy11885         92 VIG-THDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRSSRCVGNYT-QPDKVFTMSLCGEKFVVGT-AGRKVCIWDLRN  167 (327)
Q Consensus        92 ~~~-~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~d~~v~iwD~~~  167 (327)
                      .+. ..-.....|+++++++.|+.+ ...+.|...|+.......... .......+...++.++... ..+.|...|..+
T Consensus       164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~t  243 (619)
T 3s94_A          164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYT  243 (619)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSS
T ss_pred             EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCC
Confidence            332 223346889999877777666 446789999986543221111 1111223334445555543 456788888765


Q ss_pred             Cc
Q psy11885        168 MG  169 (327)
Q Consensus       168 ~~  169 (327)
                      ++
T Consensus       244 g~  245 (619)
T 3s94_A          244 GE  245 (619)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=94.80  E-value=1.6  Score=36.96  Aligned_cols=150  Identities=7%  Similarity=-0.004  Sum_probs=91.1

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE--EEEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCCCceee
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--RLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQTETV   92 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~~~~   92 (327)
                      .+.+++|++.++.++.+-...+.|+.++..++..  ......-.....+++.  .+...++-...+.|.+++++......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            4668899986555666656678899999876531  1111111234456664  34444455567889999987654443


Q ss_pred             ee-cCCccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeeee-eC---CCcEEEEecCCCeEEEE-eCCCeEEEEE
Q psy11885         93 IG-THDQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGNY-TQ---PDKVFTMSLCGEKFVVG-TAGRKVCIWD  164 (327)
Q Consensus        93 ~~-~h~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~-~~d~~v~iwD  164 (327)
                      +. ........+++.|.+..++.+..  .+.|...++.... ...+ ..   ...-+++++.+..++.+ +..+.|..+|
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            32 33345689999987666666553  5788888876432 2222 11   11235666656666655 4557888888


Q ss_pred             CCC
Q psy11885        165 LRN  167 (327)
Q Consensus       165 ~~~  167 (327)
                      +..
T Consensus       195 ~dG  197 (318)
T 3sov_A          195 LDG  197 (318)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            864

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.74  E-value=1.7  Score=36.89  Aligned_cols=258  Identities=10%  Similarity=0.059  Sum_probs=117.4

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--EEEEec---CCCceeeEEEeCCceEEEEecCCcEEEEEcCCC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--LRLKYA---HSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQ   88 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~---h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~   88 (327)
                      ....+++|.|.+. +..++ ++.++.|. +....++  ......   ....+..+.|.+ ..++.++.++.|.. ..+.+
T Consensus        34 ~~~~~~~v~~~~~-~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG  108 (327)
T 2xbg_A           34 TTATILDMSFIDR-HHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGG  108 (327)
T ss_dssp             CSSCEEEEEESSS-SCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTT
T ss_pred             CCCcEEEEEECCC-CcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCC
Confidence            3467999999863 45555 56677653 3344443  121111   233567777765 44555566665444 22322


Q ss_pred             ce-eeee---cCCccEEEEEEeCCCCEEEEEECCCeE-EEEeCCCCceeeeeeC--CCcEEEE--ecCCCeEEEEeCCCe
Q psy11885         89 TE-TVIG---THDQPIRAVEYSDEVNCILTGSWDTSV-KMWDPRSSRCVGNYTQ--PDKVFTM--SLCGEKFVVGTAGRK  159 (327)
Q Consensus        89 ~~-~~~~---~h~~~V~~l~~~~~~~~l~sgs~d~~i-~lwdl~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~d~~  159 (327)
                      +. ....   .+...+..+.+.+++..++. +.++.| +..|  .++.-.....  ...+..+  .+.+..++++...+.
T Consensus       109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~  185 (327)
T 2xbg_A          109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMI-TNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSF  185 (327)
T ss_dssp             SSCEECCCCTTCSSCEEEEEEEETTEEEEE-ETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSE
T ss_pred             CCceECccccCCCCCeEEEEEECCCCEEEE-eCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcE
Confidence            21 1111   13345677777666655554 456654 3333  2332222221  2223333  344545555544444


Q ss_pred             EEEEEC--CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885        160 VCIWDL--RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP  237 (327)
Q Consensus       160 v~iwD~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  237 (327)
                      .+-+|-  .+-..+    ..........+.+.+++. +++...++...+...|.+..+......         .+.....
T Consensus       186 ~~S~d~gG~tW~~~----~~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~---------~~~~~~~  251 (327)
T 2xbg_A          186 YSTWEPGQTAWEPH----NRTTSRRLHNMGFTPDGR-LWMIVNGGKIAFSDPDNSENWGELLSP---------LRRNSVG  251 (327)
T ss_dssp             EEEECTTCSSCEEE----ECCSSSCEEEEEECTTSC-EEEEETTTEEEEEETTEEEEECCCBCT---------TSSCCSC
T ss_pred             EEEeCCCCCceeEC----CCCCCCccceeEECCCCC-EEEEeCCceEEEecCCCCCeeEeccCC---------cccCCcc
Confidence            555553  111111    001111123344444443 333333443222111112111111100         0000012


Q ss_pred             eeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC---cCCcceEEEEECCCCCEEEEE
Q psy11885        238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH---RYDTGITSLCFSYDGNVLAIA  295 (327)
Q Consensus       238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~---~~~~~v~~l~fspdg~~la~~  295 (327)
                      +.++++.|++..++++. +|.| ++....++.-..+.   .....+.+++|.++++.+|.|
T Consensus       252 ~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G  310 (327)
T 2xbg_A          252 FLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILG  310 (327)
T ss_dssp             EEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEEC
T ss_pred             eEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEc
Confidence            56788888887777765 6666 44444454332222   223467889998776655544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.65  E-value=3.4  Score=39.92  Aligned_cols=166  Identities=9%  Similarity=-0.034  Sum_probs=90.1

Q ss_pred             EEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCC-----ceeeeecCCccEEE
Q psy11885         30 FLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQ-----TETVIGTHDQPIRA  102 (327)
Q Consensus        30 ~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~-----~~~~~~~h~~~V~~  102 (327)
                      +|+.+ ....|+..++...+...+......+..++|. ....++ +-...+.|+.++++..     ...++.........
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G  475 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  475 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             ccccc-cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence            44433 3567888888776644444444556778884 344554 5555678888988753     12233323345678


Q ss_pred             EEEeCCCCEEEE-EECCCeEEEEeCCCCceeeeee-CCC--cEEEEecCCCeEEEEeC--CCeEEEEECCCCccceeeec
Q psy11885        103 VEYSDEVNCILT-GSWDTSVKMWDPRSSRCVGNYT-QPD--KVFTMSLCGEKFVVGTA--GRKVCIWDLRNMGYIMQRRE  176 (327)
Q Consensus       103 l~~~~~~~~l~s-gs~d~~i~lwdl~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~--d~~v~iwD~~~~~~~~~~~~  176 (327)
                      |++...++.|+. -...++|.+.++........+. ...  .-+++.+....|+....  .+.|.+.++...... ....
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~lv~  554 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVT  554 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEEC
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EEEe
Confidence            999887765554 4567899999987543322222 111  23455655455555443  267888888754321 1111


Q ss_pred             ccceeeeEEeEEeeCCCceEEE
Q psy11885        177 SSLKFQTRCIKCFPNKQGYVLS  198 (327)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~  198 (327)
                      ..+. .++.+++.+....+..+
T Consensus       555 ~~l~-~P~GLavD~~~~~LYwa  575 (791)
T 3m0c_C          555 ENIQ-WPNGITLDLLSGRLYWV  575 (791)
T ss_dssp             SSCS-CEEEEEEETTTTEEEEE
T ss_pred             CCCC-CceEEEEecCCCeEEEE
Confidence            1221 24556666554444444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.60  E-value=1.7  Score=36.15  Aligned_cols=140  Identities=13%  Similarity=0.130  Sum_probs=74.4

Q ss_pred             CcEEEEEE-CC-----CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEecC-----CcEEEEEcCCCc---ee
Q psy11885         28 NQFLLASS-WD-----CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGLD-----CTLKMFDFNTQT---ET   91 (327)
Q Consensus        28 ~~~l~s~~-~d-----~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~D-----g~i~vwd~~~~~---~~   91 (327)
                      +.+++.|| .+     ..+.+||..+++-........+  -.+++..++...+.|+.+     ..+.+||..++.   -.
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~   94 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY   94 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCE
T ss_pred             CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeE
Confidence            46777777 33     4789999988874332211111  123333466666677765     468889987765   33


Q ss_pred             eeecCC--ccEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCceeeeeeCCC---cEEEEecCCCeEEEEeCC----
Q psy11885         92 VIGTHD--QPIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCVGNYTQPD---KVFTMSLCGEKFVVGTAG----  157 (327)
Q Consensus        92 ~~~~h~--~~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d----  157 (327)
                      .+....  ..-.+++. .+++.++.|+.+     ..+.+||+.+++....-..+.   ....+...+..++.|+.+    
T Consensus        95 ~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  173 (301)
T 2vpj_A           95 SVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNI  173 (301)
T ss_dssp             EECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCB
T ss_pred             ECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcc
Confidence            222110  00111222 245666666643     468899998876433221111   112223345455555543    


Q ss_pred             -CeEEEEECCCC
Q psy11885        158 -RKVCIWDLRNM  168 (327)
Q Consensus       158 -~~v~iwD~~~~  168 (327)
                       ..+.+||+.+.
T Consensus       174 ~~~~~~~d~~~~  185 (301)
T 2vpj_A          174 LNSVEKYDPHTG  185 (301)
T ss_dssp             CCCEEEEETTTT
T ss_pred             cceEEEEeCCCC
Confidence             46888998764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=94.58  E-value=1.8  Score=36.50  Aligned_cols=223  Identities=9%  Similarity=-0.036  Sum_probs=115.5

Q ss_pred             CCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCC----Cce-eeeecCCccEEEEEEeCCC
Q psy11885         37 DCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNT----QTE-TVIGTHDQPIRAVEYSDEV  109 (327)
Q Consensus        37 d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~----~~~-~~~~~h~~~V~~l~~~~~~  109 (327)
                      .+.|+..|+.+.+.......-..+..++|. .+..++ +-...+.|..+++++    ... ..+...-.....+++++.+
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            456899999887644333333456778885 455555 555568899999876    222 2232222345788898755


Q ss_pred             CEEE-EEECCCeEEEEeCCCCceeeeee-CCC--cEEEEecCCCeEEEEeCC--CeEEEEECCCCccceeeecccceeee
Q psy11885        110 NCIL-TGSWDTSVKMWDPRSSRCVGNYT-QPD--KVFTMSLCGEKFVVGTAG--RKVCIWDLRNMGYIMQRRESSLKFQT  183 (327)
Q Consensus       110 ~~l~-sgs~d~~i~lwdl~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~d--~~v~iwD~~~~~~~~~~~~~~~~~~~  183 (327)
                      ..|+ +-...++|.+.|+........+. ...  .-+++++.+..++.....  +.|...++...... ......+ ..+
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-~~~~~~~-~~P  166 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENI-QWP  166 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSC-SCE
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-EEEECCC-CCc
Confidence            5554 44667899999987543322222 111  234556555555554433  68888887643211 1111112 124


Q ss_pred             EEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEE
Q psy11885        184 RCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW  262 (327)
Q Consensus       184 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iW  262 (327)
                      +.+++.+....+..+.. .+.+....++.  .......  ..    .....   ....+++. .+..+.+-...+.|..+
T Consensus       167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg--~~~~~~~--~~----~~~~~---~P~giav~-~~~ly~~d~~~~~V~~~  234 (316)
T 1ijq_A          167 NGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTIL--ED----EKRLA---HPFSLAVF-EDKVFWTDIINEAIFSA  234 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEE--EC----TTTTS---SEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             eEEEEeccCCEEEEEECCCCeEEEEecCC--CceEEEe--ec----CCccC---CcEEEEEE-CCEEEEEECCCCeEEEE
Confidence            56666665554444433 33333333331  1111100  00    00011   13456664 35556666667889888


Q ss_pred             eCCCceeeeec
Q psy11885        263 DGFNKKRLCQF  273 (327)
Q Consensus       263 d~~~~~~~~~~  273 (327)
                      +..+++.+..+
T Consensus       235 ~~~~g~~~~~i  245 (316)
T 1ijq_A          235 NRLTGSDVNLL  245 (316)
T ss_dssp             ETTTCCCCEEE
T ss_pred             eCCCCcceEEE
Confidence            87666544433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.47  E-value=2.2  Score=36.90  Aligned_cols=81  Identities=9%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             EeeEEEEecCCCeEEEec-CCCeEEEEeCCC-cee--eeecCcCCcceEEEEECC-CCCEEEEEEccccccCC-CCCCCC
Q psy11885        237 PVNAISFHQEYNTFATGG-SDGYVNIWDGFN-KKR--LCQFHRYDTGITSLCFSY-DGNVLAIACSYNYELET-PPDPIP  310 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs-~dg~i~iWd~~~-~~~--~~~~~~~~~~v~~l~fsp-dg~~la~~~~~~~~~~~-~~~~~~  310 (327)
                      ..|.++|+||++.|..+. ..+.|+.|++.. ++.  ...+ ......-.+++.+ +|++.+++......+.+ -|+..+
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~  300 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPP  300 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCC
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCC
Confidence            368899999998876654 468899998753 321  1122 2234457799999 59988766533333333 233333


Q ss_pred             CCcEEEEE
Q psy11885        311 PNNIFIRH  318 (327)
Q Consensus       311 ~~~~~~~~  318 (327)
                      ...|+-+.
T Consensus       301 ~s~v~rI~  308 (355)
T 3sre_A          301 GSEVLRIQ  308 (355)
T ss_dssp             CEEEEEEE
T ss_pred             CCEEEEEE
Confidence            44444443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.18  E-value=2.5  Score=36.40  Aligned_cols=178  Identities=13%  Similarity=0.176  Sum_probs=90.0

Q ss_pred             CCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEE----EEecCCCe--EEEEe--C--CCeEEEEECC-CCccceeee
Q psy11885        108 EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVF----TMSLCGEK--FVVGT--A--GRKVCIWDLR-NMGYIMQRR  175 (327)
Q Consensus       108 ~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~----~~~~~~~~--~~~~~--~--d~~v~iwD~~-~~~~~~~~~  175 (327)
                      ...+++....++.+.+||+ +++.++.+.... .-.    .+...+..  ++.++  .  +++|++|++. ..+.+....
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            3456777777889999999 788888776411 112    23333443  34433  3  5789999773 222221110


Q ss_pred             cc--cce---eeeEEeEE--eeCCCc--eEEEeecCeEEEEEcc-CCc--ccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        176 ES--SLK---FQTRCIKC--FPNKQG--YVLSSIEGRAAVEYLD-TGP--EMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       176 ~~--~~~---~~~~~~~~--~~~~~~--~~~~~~~~~~~i~~~~-~~~--~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      ..  ...   ..+..+++  .+....  ..+...++....+.+. ...  ...+....+..   .       ..+..|..
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---g-------sq~Egcvv  187 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---N-------SQTEGMAA  187 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---S-------SCEEEEEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---C-------CCcceEEE
Confidence            00  000   11122333  333332  2333334444332221 111  11111111110   0       13567888


Q ss_pred             ecCCCeEEEecCCCeEEEEeCC-----CceeeeecC--cCCcceEEEEE--CCCCC-EEEEEE
Q psy11885        244 HQEYNTFATGGSDGYVNIWDGF-----NKKRLCQFH--RYDTGITSLCF--SYDGN-VLAIAC  296 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd~~-----~~~~~~~~~--~~~~~v~~l~f--spdg~-~la~~~  296 (327)
                      .+....|..+-+|.-|..++..     +++.+..+.  .....+-.|++  .++|+ ||+++|
T Consensus       188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs  250 (355)
T 3amr_A          188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS  250 (355)
T ss_dssp             ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence            8989999999999777666754     344444432  12235677777  67777 777776

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.07  E-value=3.3  Score=37.50  Aligned_cols=148  Identities=11%  Similarity=0.046  Sum_probs=88.4

Q ss_pred             CeeEEEEecC-CCcEEEEEECCCcEEEEECCCCeEEEEecCC----CceeeEEE-------e-CCceEEEEecCC-c---
Q psy11885         17 GITAVKFAPN-SNQFLLASSWDCNVSLYDITNNNLRLKYAHS----DPVLDCCF-------Q-DAVHSFSGGLDC-T---   79 (327)
Q Consensus        17 ~I~~i~fs~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~----~~v~~~~~-------~-~~~~~~sgs~Dg-~---   79 (327)
                      ....|+|+|. .+.++++-...+.|++.|.+++.+..+..-.    .....++|       . ++..++.+...+ .   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983 4455555554578999999998876554321    24677888       6 556677776554 2   


Q ss_pred             ---EEEEEcCC-Cce------eeeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCC-------CCce----------
Q psy11885         80 ---LKMFDFNT-QTE------TVIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPR-------SSRC----------  131 (327)
Q Consensus        80 ---i~vwd~~~-~~~------~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~-------~~~~----------  131 (327)
                         |.+.+... +..      ..+.... ....++++|+ +.++++-..++.|..+|+.       +++.          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence               44554333 111      1222212 2346778885 4555556677889999987       4543          


Q ss_pred             -eee-eeCC----CcEEEEecCCCeEEEE-eCCCeEEEEEC
Q psy11885        132 -VGN-YTQP----DKVFTMSLCGEKFVVG-TAGRKVCIWDL  165 (327)
Q Consensus       132 -~~~-~~~~----~~~~~~~~~~~~~~~~-~~d~~v~iwD~  165 (327)
                       ... +..+    ...+++++.++.++++ +....|+.+|.
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence             111 2221    2346778888865555 45668888654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=93.46  E-value=5  Score=37.57  Aligned_cols=153  Identities=8%  Similarity=0.032  Sum_probs=94.5

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC-CceeeEEEe-CCceE-EEEecCCcEEEEEcCCCceee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS-DPVLDCCFQ-DAVHS-FSGGLDCTLKMFDFNTQTETV   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~-~~v~~~~~~-~~~~~-~sgs~Dg~i~vwd~~~~~~~~   92 (327)
                      ..+.+|+|++.++.++.+-..++.|+.+++.+.......... .....+++. .+..+ ++-...+.|.+.+++......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            467899999976655566556789999998765433333221 235566763 33444 455556889999987665443


Q ss_pred             ee-cCCccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEEEE-eCCCeEEEEECC
Q psy11885         93 IG-THDQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVG-TAGRKVCIWDLR  166 (327)
Q Consensus        93 ~~-~h~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~d~~v~iwD~~  166 (327)
                      +. ..-.....|++.|....|+-..+  .+.|...++.............  .-+++++.+.+++.+ ...+.|...|+.
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d  196 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML  196 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence            32 33345689999986666665553  5688888876443222222211  235566656666665 455688888886


Q ss_pred             CC
Q psy11885        167 NM  168 (327)
Q Consensus       167 ~~  168 (327)
                      ..
T Consensus       197 G~  198 (628)
T 4a0p_A          197 GL  198 (628)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.45  E-value=0.29  Score=42.11  Aligned_cols=110  Identities=12%  Similarity=0.125  Sum_probs=70.4

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCC--CceeeEEEe---CCceEEEE--ecCCcEEEEEcCCCceeeeec-----C
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHS--DPVLDCCFQ---DAVHSFSG--GLDCTLKMFDFNTQTETVIGT-----H   96 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~--~~v~~~~~~---~~~~~~sg--s~Dg~i~vwd~~~~~~~~~~~-----h   96 (327)
                      .++++++.||.|.-.|..+|+.+-.+...  .++....-.   .+..++.+  ..||.+..++.+++..+....     .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999976555432  233222111   12244444  579999999987764332111     2


Q ss_pred             CccEEE---EEE-----eCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC
Q psy11885         97 DQPIRA---VEY-----SDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP  138 (327)
Q Consensus        97 ~~~V~~---l~~-----~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~  138 (327)
                      ..++..   ...     ...+..+++|+.++++...|+++|+.++++...
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            223321   000     014568999999999999999999998887653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.33  E-value=3  Score=34.64  Aligned_cols=140  Identities=11%  Similarity=0.060  Sum_probs=74.0

Q ss_pred             CcEEEEEECC--CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEecC----CcEEEEEcCCCceeeeecCCcc
Q psy11885         28 NQFLLASSWD--CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGLD----CTLKMFDFNTQTETVIGTHDQP   99 (327)
Q Consensus        28 ~~~l~s~~~d--~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~D----g~i~vwd~~~~~~~~~~~h~~~   99 (327)
                      +.+++.||.+  ..+.+||..+++-.....-..+  -.+++..++...+.|+.+    ..+.++|..++.-..+.....+
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            4567777754  6799999988873322211111  122333456666677755    5677888877653322211000


Q ss_pred             --EEEEEEeCCCCEEEEEECC------CeEEEEeCCCCceeee--eeCCC-cEEEEecCCCeEEEEeC---------CCe
Q psy11885        100 --IRAVEYSDEVNCILTGSWD------TSVKMWDPRSSRCVGN--YTQPD-KVFTMSLCGEKFVVGTA---------GRK  159 (327)
Q Consensus       100 --V~~l~~~~~~~~l~sgs~d------~~i~lwdl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~---------d~~  159 (327)
                        -.+++. -+++.++.|+.+      ..+.+||+.+++....  +..+- ....+...+..++.|+.         -+.
T Consensus        92 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  170 (306)
T 3ii7_A           92 RDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS  170 (306)
T ss_dssp             CBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCC
T ss_pred             ccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccce
Confidence              011111 255666777765      5688999988764332  11111 11222334444455542         345


Q ss_pred             EEEEECCCC
Q psy11885        160 VCIWDLRNM  168 (327)
Q Consensus       160 v~iwD~~~~  168 (327)
                      +.+||+.+.
T Consensus       171 ~~~yd~~~~  179 (306)
T 3ii7_A          171 CEVYDPATE  179 (306)
T ss_dssp             EEEEETTTT
T ss_pred             EEEeCCCCC
Confidence            888998765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.75  E-value=4.3  Score=34.83  Aligned_cols=69  Identities=4%  Similarity=-0.044  Sum_probs=42.5

Q ss_pred             ceeeEEEeCCceEEEEecCCcEEEEEcCCCceeee------ecCCccEEEEEEeCC---CCEEEEEEC-C-----CeEEE
Q psy11885         59 PVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVI------GTHDQPIRAVEYSDE---VNCILTGSW-D-----TSVKM  123 (327)
Q Consensus        59 ~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~------~~h~~~V~~l~~~~~---~~~l~sgs~-d-----~~i~l  123 (327)
                      ....++|.+...++.+..++.|++++ + +....+      .........|+++|+   +..|+.+.. .     +.|..
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            34577885433466667789999998 3 322211      111345788999998   555655443 2     67888


Q ss_pred             EeCCCC
Q psy11885        124 WDPRSS  129 (327)
Q Consensus       124 wdl~~~  129 (327)
                      |++..+
T Consensus       110 ~~~~~~  115 (352)
T 2ism_A          110 LRHLGE  115 (352)
T ss_dssp             EEECSS
T ss_pred             EEeCCC
Confidence            887643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.46  E-value=2.6  Score=36.14  Aligned_cols=105  Identities=12%  Similarity=0.034  Sum_probs=64.2

Q ss_pred             CceEEEEecCCcEEEEEcCCCceeeeecCC--ccEEEEEE--eCCCCEEEEE--ECCCeEEEEeCCCCceeeeeeCCCcE
Q psy11885         68 AVHSFSGGLDCTLKMFDFNTQTETVIGTHD--QPIRAVEY--SDEVNCILTG--SWDTSVKMWDPRSSRCVGNYTQPDKV  141 (327)
Q Consensus        68 ~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~--~~V~~l~~--~~~~~~l~sg--s~d~~i~lwdl~~~~~~~~~~~~~~~  141 (327)
                      +..++.++.||.|.-+|.++++........  .++....-  .+.+..++.+  +.||.|..+|.++|.....+..+..+
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            346788899999999998888765432221  22222110  0112234443  68999999999888654443322111


Q ss_pred             ----EEEe----c-------CCCeEEEEeCCCeEEEEECCCCccce
Q psy11885        142 ----FTMS----L-------CGEKFVVGTAGRKVCIWDLRNMGYIM  172 (327)
Q Consensus       142 ----~~~~----~-------~~~~~~~~~~d~~v~iwD~~~~~~~~  172 (327)
                          ....    .       .+..+++++.++.+.-.|+++++.+.
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W  135 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS  135 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence                1100    1       45678899999999999999887543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.41  E-value=2.5  Score=35.04  Aligned_cols=140  Identities=17%  Similarity=0.167  Sum_probs=72.4

Q ss_pred             CcEEEEEECCC-----cEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEecC-------CcEEEEEcCCCceeee
Q psy11885         28 NQFLLASSWDC-----NVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGLD-------CTLKMFDFNTQTETVI   93 (327)
Q Consensus        28 ~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~D-------g~i~vwd~~~~~~~~~   93 (327)
                      +.+++.||.++     .+.+||..+++-........+  -.+++..++...+.|+.+       ..+.+||+.++.-..+
T Consensus       109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~  188 (302)
T 2xn4_A          109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI  188 (302)
T ss_dssp             TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEE
T ss_pred             CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC
Confidence            46777787653     578899888774332221111  123333455555666543       3577888877653322


Q ss_pred             ecCCc--cEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCceeeee--eCCC-cEEEEecCCCeEEEEeCCC-----
Q psy11885         94 GTHDQ--PIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCVGNY--TQPD-KVFTMSLCGEKFVVGTAGR-----  158 (327)
Q Consensus        94 ~~h~~--~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~d~-----  158 (327)
                      .....  .-.+++. -+++.++.|+.+     +.+.+||+++++....-  ..+- ....+...+..++.|+.++     
T Consensus       189 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~  267 (302)
T 2xn4_A          189 AEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLA  267 (302)
T ss_dssp             CCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCC
T ss_pred             CCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccc
Confidence            11100  0112222 245666777654     46889999887643221  1111 1122233444555555442     


Q ss_pred             eEEEEECCCC
Q psy11885        159 KVCIWDLRNM  168 (327)
Q Consensus       159 ~v~iwD~~~~  168 (327)
                      .+.+||+.+.
T Consensus       268 ~v~~yd~~~~  277 (302)
T 2xn4_A          268 SVEYYNPTTD  277 (302)
T ss_dssp             CEEEEETTTT
T ss_pred             cEEEEcCCCC
Confidence            4777777653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=92.40  E-value=4.5  Score=34.21  Aligned_cols=142  Identities=8%  Similarity=0.021  Sum_probs=71.2

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE--EEEe--cCCCceeeEEEeCCceEEEEecCCcEE-EEEcCCCc
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--RLKY--AHSDPVLDCCFQDAVHSFSGGLDCTLK-MFDFNTQT   89 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~--~h~~~v~~~~~~~~~~~~sgs~Dg~i~-vwd~~~~~   89 (327)
                      ...+.+|+|++ + ..++ ++.++.|.. ....++.  ....  .+...+..+.+.+...++.++.++.|. -.|  .+.
T Consensus        79 ~~~~~~i~~~~-~-~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~D--gG~  152 (327)
T 2xbg_A           79 DYRFNSVSFQG-N-EGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKD--SGK  152 (327)
T ss_dssp             CCEEEEEEEET-T-EEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESS--TTS
T ss_pred             CccEEEEEecC-C-eEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcC--CCC
Confidence            34689999986 3 4444 455665544 2333431  1111  133456666664334455455566542 232  222


Q ss_pred             e--eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee--CCCcEEE--EecCCCeEEEEeCCCeEEEE
Q psy11885         90 E--TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT--QPDKVFT--MSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        90 ~--~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~d~~v~iw  163 (327)
                      .  .....+...+..+.+.+++..++.+...+..+.+|-. ++.-..+.  .......  +...+ .++.++.++.+++.
T Consensus       153 tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g-~~~~~~~~G~~~~s  230 (327)
T 2xbg_A          153 NWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDG-RLWMIVNGGKIAFS  230 (327)
T ss_dssp             SEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTS-CEEEEETTTEEEEE
T ss_pred             CCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCC-CEEEEeCCceEEEe
Confidence            1  1222344568889999988877666544444555531 22211111  1222333  33334 45566677887776


Q ss_pred             E
Q psy11885        164 D  164 (327)
Q Consensus       164 D  164 (327)
                      +
T Consensus       231 ~  231 (327)
T 2xbg_A          231 D  231 (327)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.33  E-value=2.6  Score=37.29  Aligned_cols=107  Identities=14%  Similarity=0.170  Sum_probs=72.1

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-----------EE-EEe--c-----CCCceeeEEEe----CCceEE
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-----------LR-LKY--A-----HSDPVLDCCFQ----DAVHSF   72 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~-~~~--~-----h~~~v~~~~~~----~~~~~~   72 (327)
                      +.|..+..+|+ +.+||..+ +..|.|-.+..+.           +. ..+  +     ...+|..+.|+    .+..++
T Consensus        66 ~~i~qlvlSps-G~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LV  143 (452)
T 3pbp_A           66 DDTFHVISSTS-GDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIV  143 (452)
T ss_dssp             CTTCEEEECTT-SSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEE
T ss_pred             CceeEEEECCC-CCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEE
Confidence            47888999995 57888776 6788888876221           11 111  1     23568899995    356788


Q ss_pred             EEecCCcEEEEEcCCCc--eeeee---------cCCccEEEEEEeCCCCEEEEEE--CCCeEEEE
Q psy11885         73 SGGLDCTLKMFDFNTQT--ETVIG---------THDQPIRAVEYSDEVNCILTGS--WDTSVKMW  124 (327)
Q Consensus        73 sgs~Dg~i~vwd~~~~~--~~~~~---------~h~~~V~~l~~~~~~~~l~sgs--~d~~i~lw  124 (327)
                      .--.|+.||+||+....  +..+.         .....|.+++|..++-.|+..+  ..|.|...
T Consensus       144 VLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          144 VLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            88889999999998522  11111         1235688999998877666655  77877644

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=91.17  E-value=5.7  Score=32.85  Aligned_cols=140  Identities=13%  Similarity=0.106  Sum_probs=72.2

Q ss_pred             CcEEEEEECC----CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEecC-----CcEEEEEcCCCceeeeecC
Q psy11885         28 NQFLLASSWD----CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGLD-----CTLKMFDFNTQTETVIGTH   96 (327)
Q Consensus        28 ~~~l~s~~~d----~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~D-----g~i~vwd~~~~~~~~~~~h   96 (327)
                      +.+++.||.+    ..+..||..+++-.....-..+  -.+++..++...+.|+.+     ..+.+||..++.-..+...
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~   95 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM   95 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence            3567777754    4688999988873332211111  122333456666677755     3577888876653322211


Q ss_pred             Cc--cEEEEEEeCCCCEEEEEECCC-----eEEEEeCCCCceeee--eeCCCc-EEEEecCCCeEEEEeC-------CCe
Q psy11885         97 DQ--PIRAVEYSDEVNCILTGSWDT-----SVKMWDPRSSRCVGN--YTQPDK-VFTMSLCGEKFVVGTA-------GRK  159 (327)
Q Consensus        97 ~~--~V~~l~~~~~~~~l~sgs~d~-----~i~lwdl~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~-------d~~  159 (327)
                      ..  .-.+++. -++..++.|+.++     .+.+||+.+++....  +..+-. .......+..++.|+.       -..
T Consensus        96 p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  174 (302)
T 2xn4_A           96 RDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLST  174 (302)
T ss_dssp             SSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCC
T ss_pred             CccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccE
Confidence            00  0011222 2456666776553     578899987764332  111111 1222234444555543       245


Q ss_pred             EEEEECCCC
Q psy11885        160 VCIWDLRNM  168 (327)
Q Consensus       160 v~iwD~~~~  168 (327)
                      +.+||+.+.
T Consensus       175 ~~~yd~~~~  183 (302)
T 2xn4_A          175 VECYNATTN  183 (302)
T ss_dssp             EEEEETTTT
T ss_pred             EEEEeCCCC
Confidence            888998764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=90.83  E-value=11  Score=35.37  Aligned_cols=114  Identities=7%  Similarity=-0.071  Sum_probs=70.0

Q ss_pred             CCCeeEEEEecCCCcEEEEEE--CCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEE-ecCCcEEEEEcCCCce
Q psy11885         15 EDGITAVKFAPNSNQFLLASS--WDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSG-GLDCTLKMFDFNTQTE   90 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sg-s~Dg~i~vwd~~~~~~   90 (327)
                      -...++|+++|..+. |....  ..+.|...++...........-.....+++. ++..++-+ ...+.|...|++....
T Consensus       122 l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~  200 (628)
T 4a0p_A          122 LDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR  200 (628)
T ss_dssp             CCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence            356789999996544 44444  2467888888765543333333456678885 45666644 4467888999876544


Q ss_pred             eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885         91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR  130 (327)
Q Consensus        91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~  130 (327)
                      ..+.........|++.. +..+.+-...+.|...|..+++
T Consensus       201 ~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          201 EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            44433333345777765 3444444457889988876654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=90.43  E-value=6.6  Score=32.37  Aligned_cols=139  Identities=16%  Similarity=0.180  Sum_probs=73.1

Q ss_pred             CcEEEEEECC-----CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEecC-----CcEEEEEcCCCceeeeec
Q psy11885         28 NQFLLASSWD-----CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGLD-----CTLKMFDFNTQTETVIGT   95 (327)
Q Consensus        28 ~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~D-----g~i~vwd~~~~~~~~~~~   95 (327)
                      +.+++.||.+     ..+.+||..+++-........+  -.+++..++...+.|+.+     ..+.++|+.++.-..+..
T Consensus       113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~  192 (301)
T 2vpj_A          113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP  192 (301)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC
T ss_pred             CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC
Confidence            5677777754     3688999988873322221111  123333466666677655     457888887765333221


Q ss_pred             CCcc--EEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCceeee--eeCCC-cEEEEecCCCeEEEEeCC-----CeE
Q psy11885         96 HDQP--IRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCVGN--YTQPD-KVFTMSLCGEKFVVGTAG-----RKV  160 (327)
Q Consensus        96 h~~~--V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~d-----~~v  160 (327)
                      ...+  -.++.. -+++.++.|+.+     ..+.+||+++++....  +..+. ....+...+..++.|+.+     ..+
T Consensus       193 ~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v  271 (301)
T 2vpj_A          193 MATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSI  271 (301)
T ss_dssp             CSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEE
T ss_pred             CCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccE
Confidence            1111  111222 245666777664     5689999988764332  11111 112223344445555544     356


Q ss_pred             EEEECCC
Q psy11885        161 CIWDLRN  167 (327)
Q Consensus       161 ~iwD~~~  167 (327)
                      .+||+++
T Consensus       272 ~~yd~~~  278 (301)
T 2vpj_A          272 ECYDPII  278 (301)
T ss_dssp             EEEETTT
T ss_pred             EEEcCCC
Confidence            7777764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=89.80  E-value=7.8  Score=32.26  Aligned_cols=105  Identities=9%  Similarity=0.033  Sum_probs=57.2

Q ss_pred             CCcEEEEEECC--------CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEec-C-----CcEEEEEcCCCce
Q psy11885         27 SNQFLLASSWD--------CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGL-D-----CTLKMFDFNTQTE   90 (327)
Q Consensus        27 ~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~-D-----g~i~vwd~~~~~~   90 (327)
                      ++.+++.||.+        ..+.+||..+++-.....-..+  -.+++..++...+.|+. +     ..+.+||..+..-
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  177 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW  177 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence            34677777743        4689999988763322211111  12333356666667766 2     4688888877643


Q ss_pred             eeeecCCcc--EEEEEEeCCCCEEEEEECCC-----eEEEEeCCCCcee
Q psy11885         91 TVIGTHDQP--IRAVEYSDEVNCILTGSWDT-----SVKMWDPRSSRCV  132 (327)
Q Consensus        91 ~~~~~h~~~--V~~l~~~~~~~~l~sgs~d~-----~i~lwdl~~~~~~  132 (327)
                      ..+.....+  -.+++. -+++.++.|+.++     .+.+||+.+.+..
T Consensus       178 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          178 KELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             EECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred             EECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence            322211100  111222 2556677777654     5889999887543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=89.57  E-value=13  Score=34.61  Aligned_cols=220  Identities=8%  Similarity=-0.028  Sum_probs=106.3

Q ss_pred             CCCcEEEEECCCCe--EEEEecCCCceeeEEEe-CCceEEEE-ecCCcEEEEEcCCCc--eeeeecCCccEEEEEEeCCC
Q psy11885         36 WDCNVSLYDITNNN--LRLKYAHSDPVLDCCFQ-DAVHSFSG-GLDCTLKMFDFNTQT--ETVIGTHDQPIRAVEYSDEV  109 (327)
Q Consensus        36 ~d~~i~iwd~~~~~--~~~~~~h~~~v~~~~~~-~~~~~~sg-s~Dg~i~vwd~~~~~--~~~~~~h~~~V~~l~~~~~~  109 (327)
                      ..+.|+.-|+....  .......-.....++|. .+..++-+ ...+.|..++++...  ...+..--.....|+++..+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            35678888887643  22222223346677875 45556544 446788888887653  22333222457889999866


Q ss_pred             CEEEEE-ECCCeEEEEeCCCCceeeeee-C--CCcEEEEecCCCeEEEEeC--CCeEEEEECCCCccceeeecccceeee
Q psy11885        110 NCILTG-SWDTSVKMWDPRSSRCVGNYT-Q--PDKVFTMSLCGEKFVVGTA--GRKVCIWDLRNMGYIMQRRESSLKFQT  183 (327)
Q Consensus       110 ~~l~sg-s~d~~i~lwdl~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~--d~~v~iwD~~~~~~~~~~~~~~~~~~~  183 (327)
                      +.|+.+ ...+.|.+.++.......... .  ...-+++.+.+..++....  ...|...++...... ......+ ..+
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~-~l~~~~~-~~P  173 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEI-YWP  173 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSC-SSE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE-EEEeCCC-CCC
Confidence            655554 557899999987543211111 1  1223566665555554443  356777777643211 1111111 123


Q ss_pred             EEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEe
Q psy11885        184 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd  263 (327)
                      ..+++.+....+..+.... ..|+..+...........        ..   ......+++..+ ..+.+-...+.|...|
T Consensus       174 ~Glald~~~~~LY~aD~~~-~~I~~~~~dG~~~~~~~~--------~~---~~~P~gi~~~~~-~ly~td~~~~~V~~~d  240 (619)
T 3s94_A          174 NGLTLDYEEQKLYWADAKL-NFIHKSNLDGTNRQAVVK--------GS---LPHPFALTLFED-ILYWTDWSTHSILACN  240 (619)
T ss_dssp             EEEEEETTTTEEEEEETTT-CCEEEESSSCCEEC--------------------CCCEEESSS-EEEEECTTTCSEEEEE
T ss_pred             cEEEEEccCCEEEEEeCCC-CeEEEecCCCCccEEEEe--------CC---CCCceEEEEeCC-EEEEecCCCCEEEEEE
Confidence            5566665544444433222 123233322111111000        00   111345676655 4445555667888888


Q ss_pred             CCCceee
Q psy11885        264 GFNKKRL  270 (327)
Q Consensus       264 ~~~~~~~  270 (327)
                      ..+++..
T Consensus       241 ~~tg~~~  247 (619)
T 3s94_A          241 KYTGEGL  247 (619)
T ss_dssp             SSSCCCC
T ss_pred             CCCCccc
Confidence            7766543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=89.36  E-value=3  Score=33.35  Aligned_cols=102  Identities=4%  Similarity=-0.066  Sum_probs=56.7

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCc--------eeeEEEeCCceEEEEecCCcEEEEEcCC
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDP--------VLDCCFQDAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~--------v~~~~~~~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      ..++.++|+|+ +.+.++  .+|.+.-.+..+.+......-...        -..+.|-....++.. .||.|..++-.+
T Consensus        41 ~~~~~laf~P~-G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPG-GELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred             ccceeEEECCC-ccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence            36789999995 455554  577766666544221111110111        234455333444444 579998887533


Q ss_pred             Cce-e------eeecCC-ccEEEEEEeCCCCEEEEEECCCeEEE
Q psy11885         88 QTE-T------VIGTHD-QPIRAVEYSDEVNCILTGSWDTSVKM  123 (327)
Q Consensus        88 ~~~-~------~~~~h~-~~V~~l~~~~~~~~l~sgs~d~~i~l  123 (327)
                      ... .      .+..+. ..+..|.+.|+|.+.+..  |+.+.-
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence            221 1      121111 457999999999866665  787543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=88.90  E-value=7.8  Score=32.19  Aligned_cols=138  Identities=12%  Similarity=0.107  Sum_probs=71.4

Q ss_pred             CcEEEEEECC-----CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEecC-----CcEEEEEcCCCceeeeec
Q psy11885         28 NQFLLASSWD-----CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGLD-----CTLKMFDFNTQTETVIGT   95 (327)
Q Consensus        28 ~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~D-----g~i~vwd~~~~~~~~~~~   95 (327)
                      +++++.||.+     ..+.+||..+++-........+  -.+++..++...+.|+.+     ..+.+||+.+..-..+..
T Consensus       122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~  201 (308)
T 1zgk_A          122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA  201 (308)
T ss_dssp             TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC
T ss_pred             CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC
Confidence            4677777644     4688999988773332211111  122333456666677655     457888887664332211


Q ss_pred             C---CccEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCceeee--eeCCC-cEEEEecCCCeEEEEeCC-----Ce
Q psy11885         96 H---DQPIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCVGN--YTQPD-KVFTMSLCGEKFVVGTAG-----RK  159 (327)
Q Consensus        96 h---~~~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~d-----~~  159 (327)
                      .   ...-..+.+  +++.++.|+.+     ..+.+||+.+.+....  +..+- ....+...+..++.|+.+     ..
T Consensus       202 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~  279 (308)
T 1zgk_A          202 MNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDS  279 (308)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCE
T ss_pred             CCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccce
Confidence            1   111112222  55666777654     5689999988764332  11111 112222344445555533     35


Q ss_pred             EEEEECCC
Q psy11885        160 VCIWDLRN  167 (327)
Q Consensus       160 v~iwD~~~  167 (327)
                      +.+||+.+
T Consensus       280 v~~yd~~~  287 (308)
T 1zgk_A          280 VECYDPDT  287 (308)
T ss_dssp             EEEEETTT
T ss_pred             EEEEcCCC
Confidence            67777764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=87.65  E-value=11  Score=31.16  Aligned_cols=141  Identities=10%  Similarity=0.060  Sum_probs=73.8

Q ss_pred             CCcEEEEEECC------CcEEEEECCCCeEEEEecCCC--ceeeEEEeCCceEEEEec---------CCcEEEEEcCCCc
Q psy11885         27 SNQFLLASSWD------CNVSLYDITNNNLRLKYAHSD--PVLDCCFQDAVHSFSGGL---------DCTLKMFDFNTQT   89 (327)
Q Consensus        27 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~h~~--~v~~~~~~~~~~~~sgs~---------Dg~i~vwd~~~~~   89 (327)
                      ++.+++.||.+      ..+.+||..+++-........  .-.+++..++...+.|+.         -..+.+||..+..
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~  180 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET  180 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence            35677888765      568999998887333221111  112233345555556654         3457788887765


Q ss_pred             eeeeecCCc--cEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCceeee--eeCCC-cEEEEecCCCeEEEEeCC--
Q psy11885         90 ETVIGTHDQ--PIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCVGN--YTQPD-KVFTMSLCGEKFVVGTAG--  157 (327)
Q Consensus        90 ~~~~~~h~~--~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~d--  157 (327)
                      -..+.....  .-.+++.. +++.++.|+.+     ..+.+||+.+++....  +..+. ...++...+..++.|+.+  
T Consensus       181 W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~  259 (306)
T 3ii7_A          181 WTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGV  259 (306)
T ss_dssp             EEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSS
T ss_pred             EEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCC
Confidence            333221111  11122222 45566666543     4688999988764322  11111 112223345556666643  


Q ss_pred             ---CeEEEEECCCC
Q psy11885        158 ---RKVCIWDLRNM  168 (327)
Q Consensus       158 ---~~v~iwD~~~~  168 (327)
                         +.+.+||+.+.
T Consensus       260 ~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          260 GRLGHILEYNTETD  273 (306)
T ss_dssp             SBCCEEEEEETTTT
T ss_pred             eeeeeEEEEcCCCC
Confidence               46778887653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=86.47  E-value=14  Score=31.26  Aligned_cols=91  Identities=11%  Similarity=0.064  Sum_probs=46.4

Q ss_pred             CCcEEEEEECC-CcEEEEECCC--CeEEEEecCC--Cc-eeeEEEeCCceEEEEec-C---------CcEEEEEcCCCce
Q psy11885         27 SNQFLLASSWD-CNVSLYDITN--NNLRLKYAHS--DP-VLDCCFQDAVHSFSGGL-D---------CTLKMFDFNTQTE   90 (327)
Q Consensus        27 ~~~~l~s~~~d-~~i~iwd~~~--~~~~~~~~h~--~~-v~~~~~~~~~~~~sgs~-D---------g~i~vwd~~~~~~   90 (327)
                      ++.+++.||.+ ..+.++|...  .+-.....-.  .. -.+++..++...+.||. +         ..+.+||..++.-
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            35677777754 5788999874  4322221111  11 12333345655666665 2         4678888877653


Q ss_pred             eeeecCC-cc--EEEEEEeCCCCEEEEEECC
Q psy11885         91 TVIGTHD-QP--IRAVEYSDEVNCILTGSWD  118 (327)
Q Consensus        91 ~~~~~h~-~~--V~~l~~~~~~~~l~sgs~d  118 (327)
                      ..+.... .+  -.+++. .+++.++.|+.+
T Consensus        99 ~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           99 VKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             EECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             EECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            3222111 11  111222 456677777765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=84.80  E-value=1.4  Score=35.29  Aligned_cols=65  Identities=15%  Similarity=0.109  Sum_probs=42.0

Q ss_pred             eEEEEecCCCeEEEecCCCeEEEEeCCCceeeee------c-CcCCcceEEEEECCCCCEEEEEEccccccCCCC
Q psy11885        239 NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ------F-HRYDTGITSLCFSYDGNVLAIACSYNYELETPP  306 (327)
Q Consensus       239 ~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~------~-~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~  306 (327)
                      .++.|.|+|.+.++  .||.|+-++-.+...-..      + ...=..+..|.|.|+|.+.|+. ...+....+|
T Consensus        91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P  162 (236)
T 1tl2_A           91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPP  162 (236)
T ss_dssp             SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCC
T ss_pred             eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCC
Confidence            47899999988888  569998887432111111      1 0011357899999999999988 4444444454

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=83.79  E-value=18  Score=33.35  Aligned_cols=61  Identities=11%  Similarity=0.072  Sum_probs=41.7

Q ss_pred             EEeeEEEEecCCCeEEEecC------------CCeEEEEeCCCceeeeecCcC-CcceEEEEECCCCCEEEEEE
Q psy11885        236 YPVNAISFHQEYNTFATGGS------------DGYVNIWDGFNKKRLCQFHRY-DTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       236 ~~v~~v~~spd~~~lasgs~------------dg~i~iWd~~~~~~~~~~~~~-~~~v~~l~fspdg~~la~~~  296 (327)
                      ...+.|+|+++|.+.+....            ...+..++..+++....+... ...++.++||||+++|.++-
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            45678999999988884322            125666676666644433322 23579999999999998885

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=83.01  E-value=19  Score=29.88  Aligned_cols=104  Identities=12%  Similarity=0.130  Sum_probs=55.3

Q ss_pred             CcEEEEEECC-------CcEEEEECCCCeEEEEecCCCce--eeEEEeCCceEEEEec------CCcEEEEEcCCCceee
Q psy11885         28 NQFLLASSWD-------CNVSLYDITNNNLRLKYAHSDPV--LDCCFQDAVHSFSGGL------DCTLKMFDFNTQTETV   92 (327)
Q Consensus        28 ~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~h~~~v--~~~~~~~~~~~~sgs~------Dg~i~vwd~~~~~~~~   92 (327)
                      +.+++.||.+       ..+.+||..+++-........+.  .+++..++...+.|+.      -..+.++|..++.-..
T Consensus       110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~  189 (318)
T 2woz_A          110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD  189 (318)
T ss_dssp             TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEE
T ss_pred             CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE
Confidence            4677778764       35888898887733222111111  1233345655566654      2458888887765332


Q ss_pred             eecCCc--cEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCcee
Q psy11885         93 IGTHDQ--PIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCV  132 (327)
Q Consensus        93 ~~~h~~--~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~  132 (327)
                      +.....  .-.+++. -+++.++.|+.+     ..+.+||+.+++..
T Consensus       190 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          190 LAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             ECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             CCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            221110  1112222 245666666643     35778999887643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=82.94  E-value=27  Score=31.57  Aligned_cols=105  Identities=14%  Similarity=0.152  Sum_probs=62.4

Q ss_pred             eeEEEe--CCceEEEEecC-CcEEEEEcCCCceeeeecC----CccEEEEEE-------eCCCCEEEEEECCC-------
Q psy11885         61 LDCCFQ--DAVHSFSGGLD-CTLKMFDFNTQTETVIGTH----DQPIRAVEY-------SDEVNCILTGSWDT-------  119 (327)
Q Consensus        61 ~~~~~~--~~~~~~sgs~D-g~i~vwd~~~~~~~~~~~h----~~~V~~l~~-------~~~~~~l~sgs~d~-------  119 (327)
                      ..++|.  +...|+.+... +.|++.|++.+....+..-    ......|+|       +++++.|+.+...+       
T Consensus       142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~  221 (496)
T 3kya_A          142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP  221 (496)
T ss_dssp             EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred             CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence            355664  24556655543 6788888887765543321    124789999       99999777776654       


Q ss_pred             eEEEEeCCC-Cce--------eeeeeCCCcEEEEecCCCe-EEEEeCCCeEEEEECC
Q psy11885        120 SVKMWDPRS-SRC--------VGNYTQPDKVFTMSLCGEK-FVVGTAGRKVCIWDLR  166 (327)
Q Consensus       120 ~i~lwdl~~-~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~d~~v~iwD~~  166 (327)
                      .|.+++... ++.        +..+..+. .+.+++.+.. +++-..++.|..+|+.
T Consensus       222 ~V~~i~r~~~G~~~~~~~~~~v~~~~~p~-giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          222 SVYIIKRNADGTFDDRSDIQLIAAYKQCN-GATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             EEEEEECCTTSCCSTTSCEEEEEEESCCC-CEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             eEEEEecCCCCceeecccceeeccCCCce-EEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            266666433 222        12222222 3455664344 5555677889999987

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.76  E-value=7.6  Score=38.39  Aligned_cols=38  Identities=21%  Similarity=0.331  Sum_probs=32.7

Q ss_pred             cEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee
Q psy11885         99 PIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT  136 (327)
Q Consensus        99 ~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~  136 (327)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677777888899999999999999999999987653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=82.59  E-value=19  Score=29.69  Aligned_cols=103  Identities=16%  Similarity=0.159  Sum_probs=55.2

Q ss_pred             CCcEEEEEECC----CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEec----C-----CcEEEEEcCCCcee
Q psy11885         27 SNQFLLASSWD----CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGL----D-----CTLKMFDFNTQTET   91 (327)
Q Consensus        27 ~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~----D-----g~i~vwd~~~~~~~   91 (327)
                      ++.+++.||.+    ..+.+||..+++-........+  -.+++..++...+.|+.    +     ..+.++|..++.-.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            45677778742    4689999988874332211111  11233345555666665    2     46778888776533


Q ss_pred             eeec---CCccEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCce
Q psy11885         92 VIGT---HDQPIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRC  131 (327)
Q Consensus        92 ~~~~---h~~~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~  131 (327)
                      .+..   ....-..+.+  +++.++.|+.+     ..+.+||+.+++.
T Consensus       104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  149 (308)
T 1zgk_A          104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW  149 (308)
T ss_dssp             ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred             ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence            2211   1111112222  45566666543     4678899887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=82.56  E-value=5  Score=34.45  Aligned_cols=51  Identities=10%  Similarity=0.113  Sum_probs=36.7

Q ss_pred             eeEEEEecCCCeEEEecCCCeEEEEeCCCcee--eeec----CcCCcceEEEEECCC
Q psy11885        238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKR--LCQF----HRYDTGITSLCFSYD  288 (327)
Q Consensus       238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~--~~~~----~~~~~~v~~l~fspd  288 (327)
                      .+.++|.|||++|++--..|.|++++..+++.  +..+    ...+.....|+|+||
T Consensus        34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred             ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence            46899999999888776689999998655443  2212    123456789999995

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=81.58  E-value=23  Score=29.88  Aligned_cols=131  Identities=8%  Similarity=0.025  Sum_probs=60.3

Q ss_pred             CcEEEEECCCCeEEEEec--CCCce-eeEEEeCCceEEEEec------CCcEEEEEc--CCCceeeeecC---CccE-EE
Q psy11885         38 CNVSLYDITNNNLRLKYA--HSDPV-LDCCFQDAVHSFSGGL------DCTLKMFDF--NTQTETVIGTH---DQPI-RA  102 (327)
Q Consensus        38 ~~i~iwd~~~~~~~~~~~--h~~~v-~~~~~~~~~~~~sgs~------Dg~i~vwd~--~~~~~~~~~~h---~~~V-~~  102 (327)
                      ..+.+||..+++-.....  ..... .+++..++...+.|+.      ...+..+|+  ++..-..+...   .... .+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~  247 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF  247 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence            578999998887332221  11111 2344445555566654      235666776  33322222111   1101 11


Q ss_pred             EEEeCCCCEEEEEECC----------------------CeEEEEeCCCCceeee--eeCCC-cEEEEecCCCeEEEEeCC
Q psy11885        103 VEYSDEVNCILTGSWD----------------------TSVKMWDPRSSRCVGN--YTQPD-KVFTMSLCGEKFVVGTAG  157 (327)
Q Consensus       103 l~~~~~~~~l~sgs~d----------------------~~i~lwdl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~d  157 (327)
                      ++. .+++.++.|+.+                      ..+.+||+++.+....  +..+- ...++...+..++.|+.+
T Consensus       248 ~~~-~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~  326 (357)
T 2uvk_A          248 AGI-SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGET  326 (357)
T ss_dssp             EEE-ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEEC
T ss_pred             EEE-ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeC
Confidence            222 345666666532                      2577899987654332  22211 122334456666777754


Q ss_pred             C------eEEEEECCCCc
Q psy11885        158 R------KVCIWDLRNMG  169 (327)
Q Consensus       158 ~------~v~iwD~~~~~  169 (327)
                      +      .|.++++++.+
T Consensus       327 ~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          327 AGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             GGGCEEEEEEEEEC-CCS
T ss_pred             CCCCEeeeEEEEEEcCcE
Confidence            2      35555776654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=81.27  E-value=8.1  Score=34.52  Aligned_cols=58  Identities=14%  Similarity=0.165  Sum_probs=38.1

Q ss_pred             eeEEEEecCCCeEEEecCCCeEEEEeCCCcee--eeecCc------CCcceEEEEECCC---CCEEEEE
Q psy11885        238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKR--LCQFHR------YDTGITSLCFSYD---GNVLAIA  295 (327)
Q Consensus       238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~--~~~~~~------~~~~v~~l~fspd---g~~la~~  295 (327)
                      ...++|.|+|+++++-...+.|++++..+++.  +..+..      .+.....|+|+||   +.+|-.+
T Consensus        29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            45899999999888776556788887554432  222221      2456789999995   4444444

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=80.91  E-value=25  Score=29.96  Aligned_cols=97  Identities=6%  Similarity=-0.028  Sum_probs=57.0

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-----c-CCCceeeEEEeC----CceEEEEec----C----
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-----A-HSDPVLDCCFQD----AVHSFSGGL----D----   77 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~-h~~~v~~~~~~~----~~~~~sgs~----D----   77 (327)
                      .....|+|.|++ . |+++..++.|++++. +++ ....     . .......+++.+    +..++.+..    +    
T Consensus        29 ~~P~~ia~~pdG-~-l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           29 EVPWSIAPLGGG-R-YLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             SCEEEEEEEETT-E-EEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCeEEEEcCCC-e-EEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            467899999964 5 555567799999974 444 2111     1 123567888864    355654433    3    


Q ss_pred             CcEEEEEcCCC--c---ee-e---eec-CCccEEEEEEeCCCCEEEEEE
Q psy11885         78 CTLKMFDFNTQ--T---ET-V---IGT-HDQPIRAVEYSDEVNCILTGS  116 (327)
Q Consensus        78 g~i~vwd~~~~--~---~~-~---~~~-h~~~V~~l~~~~~~~~l~sgs  116 (327)
                      ..|..|+....  .   .. +   +.. .......|+|.|||.+.++-+
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            56777776654  1   11 1   111 111246789999998766643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=80.36  E-value=29  Score=32.86  Aligned_cols=103  Identities=14%  Similarity=0.230  Sum_probs=58.8

Q ss_pred             CcEEEEEECC------CcEEEEECCCCeEEEEecCCCc--eeeEEE-eCCceEEEEecCC--cEEEEEcCCCceeeeec-
Q psy11885         28 NQFLLASSWD------CNVSLYDITNNNLRLKYAHSDP--VLDCCF-QDAVHSFSGGLDC--TLKMFDFNTQTETVIGT-   95 (327)
Q Consensus        28 ~~~l~s~~~d------~~i~iwd~~~~~~~~~~~h~~~--v~~~~~-~~~~~~~sgs~Dg--~i~vwd~~~~~~~~~~~-   95 (327)
                      +.+++.||.+      +.+.+||..+++-.....-..+  -.+++. .++...+.||.++  .+.+||..++.-..+.. 
T Consensus       452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~  531 (695)
T 2zwa_A          452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK  531 (695)
T ss_dssp             TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS
T ss_pred             CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC
Confidence            4677778754      3578899988763322111111  123333 3666667777665  68888887765332211 


Q ss_pred             -----CCccEEEEEEeCC-CCEEEEEEC--C-----CeEEEEeCCCCc
Q psy11885         96 -----HDQPIRAVEYSDE-VNCILTGSW--D-----TSVKMWDPRSSR  130 (327)
Q Consensus        96 -----h~~~V~~l~~~~~-~~~l~sgs~--d-----~~i~lwdl~~~~  130 (327)
                           ....-.++.+..+ ++.++.|+.  +     +.+..||+.+++
T Consensus       532 g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          532 DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence                 1111223445554 556666765  2     468899998876

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=80.28  E-value=6.1  Score=36.65  Aligned_cols=60  Identities=13%  Similarity=0.094  Sum_probs=39.0

Q ss_pred             EeeEEEEecCCCeEEEecCC------------CeEEEEeCCCceeeeecCcC-CcceEEEEECCCCCEEEEEE
Q psy11885        237 PVNAISFHQEYNTFATGGSD------------GYVNIWDGFNKKRLCQFHRY-DTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~d------------g~i~iWd~~~~~~~~~~~~~-~~~v~~l~fspdg~~la~~~  296 (327)
                      ...-|+|+|+|.+++.-..+            ..+.+.+..+++...-+... ...++.++|+||++.|.+.-
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence            35679999999877764332            23444455555543333333 34589999999999998773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	327
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-33
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  124 bits (310), Expect = 1e-33
 Identities = 66/312 (21%), Positives = 125/312 (40%), Gaps = 23/312 (7%)

Query: 10  LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LRLKYAHSDPVLDCCF 65
           +   P+D I+ +K  P+ +  LL +SWD ++++Y          L     +  P+L C F
Sbjct: 6   IEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 66  QD----AVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSV 121
            D     ++  +   +        +   + +                 + ++  SWD  +
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 122 KMWDPRSSRC---------VGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNM--GY 170
           ++ DPR+              N    +K+FTM     + +VG    +V  + L       
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184

Query: 171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEM--QKMKYAFKCHRIK 228
                                ++GY  SSI+GR AVE+ D   +      ++AF+CHR+ 
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244

Query: 229 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 288
                  YPVN+I F   +    T GSDG ++ W+   +K++  F +++   + +  +  
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACS 303

Query: 289 GNVLAIACSYNY 300
            N+L +A S + 
Sbjct: 304 DNILCLATSDDT 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.1 bits (214), Expect = 3e-20
 Identities = 48/296 (16%), Positives = 99/296 (33%), Gaps = 16/296 (5%)

Query: 15  EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQDAVHSFS 73
              +T V F P  +  ++++S D  + ++D    +       H+D V D  F  +    +
Sbjct: 17  RSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 74  GGLDCTLKMFDFNTQTETV--IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC 131
                           E +  +  HD  + +V      + I++ S D ++KMW+ ++  C
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135

Query: 132 VGNY---TQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC 188
           V  +    +  ++   +  G      +  + V +W +       + RE   +    CI  
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH--RHVVECISW 193

Query: 189 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY-------PVNAI 241
            P      +S   G    +    GP +                   +         V  +
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253

Query: 242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
            FH       +   D  + +WD  NK+ +   + ++  +TSL F      +     
Sbjct: 254 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 2e-11
 Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 14/207 (6%)

Query: 96  HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFTMSLCGEKFVVG 154
           H  P+  V +    + +++ S D ++K+WD  +           D V  +S      ++ 
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 155 TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE 214
           +    + I      G+   R           +   PN    V +S +    +  + T   
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--- 132

Query: 215 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 274
                  F  HR           V  +  +Q+    A+  +D  V +W    K+   +  
Sbjct: 133 -GYCVKTFTGHR---------EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 275 RYDTGITSLCFSYDGNVLAIACSYNYE 301
            +   +  + ++ + +  +I+ +   E
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSE 209

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 12/82 (14%), Positives = 24/82 (29%)

Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC 296
           PV  + FH  ++   +   D  + +WD            +   +  + F + G +LA   
Sbjct: 19  PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 78

Query: 297 SYNYELETPPDPIPPNNIFIRH 318
           +                    H
Sbjct: 79  ADMTIKLWDFQGFECIRTMHGH 100

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.7 bits (200), Expect = 4e-18
 Identities = 52/292 (17%), Positives = 102/292 (34%), Gaps = 23/292 (7%)

Query: 15  EDGITAVKFAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSF 72
              I A+ +  + ++ L+++S D  + ++D  T N +      S  V+ C +     +  
Sbjct: 55  LAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113

Query: 73  SGGLDCTLKMFDFNTQTETVIGTHDQP----IRAVEYSDEVNCILTGSWDTSVKMWDPRS 128
            GGLD    +++  T+   V  + +        +     + N I+T S DT+  +WD  +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173

Query: 129 SRCVG---NYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRC 185
            +       +T      +++     FV G       +WD+R             +     
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH--ESDINA 231

Query: 186 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ 245
           I  FPN   +   S +    +  L    E+    +                 + ++SF +
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-----------GITSVSFSK 280

Query: 246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
                  G  D   N+WD     R      +D  ++ L  + DG  +A    
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.9 bits (146), Expect = 4e-11
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 6/117 (5%)

Query: 14  PEDGITAVKFAPNSNQFLLASSWDCNVSL---YDITNNNLRLKYAHSDPVLDCCF-QDAV 69
            E  I A+ F PN N      S D    L                    +    F +   
Sbjct: 225 HESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283

Query: 70  HSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
              +G  D    ++D        V+  HD  +  +  +D+   + TGSWD+ +K+W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.1 bits (136), Expect = 7e-10
 Identities = 37/246 (15%), Positives = 68/246 (27%), Gaps = 13/246 (5%)

Query: 56  HSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCIL 113
           H   +    +  D+    S   D  L ++D  T  +   I      +    Y+   N + 
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113

Query: 114 TGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQ 173
            G  D    +++ ++       ++     T  L   +F+               +  I  
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173

Query: 174 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE 233
            ++++            +        + G                +  F  H        
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE------- 226

Query: 234 KIYPVNAISFHQEYNTFATGGSDGYVNI--WDGFNKKRLCQFHRYDTGITSLCFSYDGNV 291
               +NAI F    N FATG  D    +       +           GITS+ FS  G +
Sbjct: 227 --SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284

Query: 292 LAIACS 297
           L     
Sbjct: 285 LLAGYD 290

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 12/82 (14%), Positives = 27/82 (32%)

Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC 296
            + A+ +  +     +   DG + IWD +   ++       + + +  ++  GN +A   
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116

Query: 297 SYNYELETPPDPIPPNNIFIRH 318
             N            N    R 
Sbjct: 117 LDNICSIYNLKTREGNVRVSRE 138

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (183), Expect = 8e-16
 Identities = 53/319 (16%), Positives = 108/319 (33%), Gaps = 40/319 (12%)

Query: 15  EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-------------------A 55
              +  VKF+ +     LA+  +    +Y +++ +L  +                    +
Sbjct: 62  TSVVCCVKFSNDGE--YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119

Query: 56  HSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSD-EVNCIL 113
               +   CF  D     +G  D  ++++D   +   +I    +            + ++
Sbjct: 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179

Query: 114 TGSWDTSVKMWDPRSSRCVGNYTQPDKVFTM---SLCGEKFVVGTAGRKVCIWDLRNMGY 170
           +GS D +V++WD R+ +C    +  D V T+      G+    G+  R V +WD    G+
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GF 238

Query: 171 IMQRRESSLKFQT------RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC 224
           +++R +S  +  T        +    + Q  V  S++    +  L         K     
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC 284
                    K   V +++  Q      +G  D  V  WD  +   L     +   + S+ 
Sbjct: 299 TCEVTYIGHK-DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 357

Query: 285 ------FSYDGNVLAIACS 297
                    + NV A    
Sbjct: 358 VANGSSLGPEYNVFATGSG 376

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 1e-13
 Identities = 48/271 (17%), Positives = 88/271 (32%), Gaps = 29/271 (10%)

Query: 15  EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFS 73
           +  I +V F+P+       +               + +   H   +    +        S
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 74  GGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCV 132
           G  D T++++D  T   ++  + +  +  V  S      I  GS D +V++WD  +   V
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 133 GNYTQPDKVFT----------MSLCGEKFVVGTAGRKVCIWDLRN----------MGYIM 172
                 ++  T           +  G+  V G+  R V +W+L+N               
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 173 QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI 232
           +      K     +    N +  +  S +         +G          + HR   + +
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG----NPLLMLQGHR---NSV 353

Query: 233 EKIYPVNAISFHQEYNTFATGGSDGYVNIWD 263
             +   N  S   EYN FATG  D    IW 
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.7 bits (148), Expect = 3e-11
 Identities = 36/291 (12%), Positives = 94/291 (32%), Gaps = 38/291 (13%)

Query: 39  NVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE-------- 90
           N +L    +  L     H+  V    F +     + G + T +++  +  +         
Sbjct: 44  NPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDS 103

Query: 91  -----------TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD 139
                      +   + D  IR+V +S +   + TG+ D  +++WD  + + V      +
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 163

Query: 140 KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS- 198
           +               +G       + ++         S++     +   P    Y+ + 
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG 223

Query: 199 SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY 258
           S++    V   +TG  ++++    +     +D       V ++ F ++  +  +G  D  
Sbjct: 224 SLDRAVRVWDSETGFLVERLDSENESGTGHKD------SVYSVVFTRDGQSVVSGSLDRS 277

Query: 259 VNIWDGFNKKR------------LCQFHRYDTGITSLCFSYDGNVLAIACS 297
           V +W+  N                  +  +   + S+  + +   +     
Sbjct: 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 31/184 (16%)

Query: 16  DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--------AHSDPVLDCCF-Q 66
           DG+T V  +P   +++ A S D  V ++D     L  +          H D V    F +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264

Query: 67  DAVHSFSGGLDCTLKMFDFNT-------------QTETVIGTHDQPIRAVEYSDEVNCIL 113
           D     SG LD ++K+++                  E     H   + +V  +     IL
Sbjct: 265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 324

Query: 114 TGSWDTSVKMWDPRSSRCVGNYT---------QPDKVFTMSLCGEKFVVGTAGRKVCIWD 164
           +GS D  V  WD +S   +                   ++      F  G+   K  IW 
Sbjct: 325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

Query: 165 LRNM 168
            + +
Sbjct: 385 YKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 3e-08
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 22/134 (16%)

Query: 15  EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-------------HSDPVL 61
           +D + +V F  +  Q +++ S D +V L+++ N N +                 H D VL
Sbjct: 254 KDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312

Query: 62  DCCF-QDAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEV------NCIL 113
                Q+  +  SG  D  +  +D  +     ++  H   + +V  ++        N   
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372

Query: 114 TGSWDTSVKMWDPR 127
           TGS D   ++W  +
Sbjct: 373 TGSGDCKARIWKYK 386

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.0 bits (164), Expect = 2e-13
 Identities = 27/254 (10%), Positives = 81/254 (31%), Gaps = 16/254 (6%)

Query: 56  HSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETVIGT---HDQPIRAVEYSDEVNC 111
             +P+    + +D         +  + +++ +      +     H+  +  V+++ + N 
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 112 ILTGSWDTSVKMWDPRSSRCV-----GNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLR 166
           I+T   D +  +W  +              +  +    +   +KF VG+  R + I    
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 167 NMG--YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC 224
                ++ +  +  ++     +   PN       S + +  +         ++       
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 225 HRI-----KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG 279
            ++       +       V+ + F    +  A    D  V + D   K  +         
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245

Query: 280 ITSLCFSYDGNVLA 293
           + ++ F  + +++A
Sbjct: 246 LLAVTFITESSLVA 259

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 8/61 (13%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWD--GFNKKRLCQFHRYDTGITSLCFSYDGNVLAI 294
           P++  +++++    A   ++  V+I++  G    ++ +   ++  +T + ++ D N +  
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 295 A 295
            
Sbjct: 69  C 69

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 16/112 (14%), Positives = 28/112 (25%), Gaps = 6/112 (5%)

Query: 23  FAPNSNQFLLASSWDCNVSLYDITN--NNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTL 80
               +   L+A+  DC   L+   +    L        P                LD   
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 308

Query: 81  KMFDFNTQTETVIGTHDQPIRAVEYS----DEVNCILTGSWDTSVKMWDPRS 128
                      +   H   +  +        + +   T   D  + +WD RS
Sbjct: 309 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 5e-13
 Identities = 46/249 (18%), Positives = 81/249 (32%), Gaps = 15/249 (6%)

Query: 20  AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCT 79
            V+      + +++ S D  + ++DI               + C   D     SG  D  
Sbjct: 99  TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM 158

Query: 80  LKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QP 138
           +K++D  T+T                 D    +++GS DTS+++WD  +  C+   T   
Sbjct: 159 VKVWDPETETCLHTLQGHTNRVYSLQFDG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 217

Query: 139 DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS 198
                M L     V G A   V IWD++    +   +  +          F      + S
Sbjct: 218 SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF-VITS 276

Query: 199 SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG- 257
           S +G   +  L TG  ++ +                   V  I         A G  +G 
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGG--------VVWRIRASNTKLVCAVGSRNGT 328

Query: 258 ---YVNIWD 263
               + + D
Sbjct: 329 EETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 3e-10
 Identities = 43/325 (13%), Positives = 90/325 (27%), Gaps = 64/325 (19%)

Query: 18  ITAVKFAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCFQDAVHSFSGGL 76
           IT ++F       +++ S D  + ++   T   LR    H+  V     +D +       
Sbjct: 20  ITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTD 76

Query: 77  DCTLKMFDFNTQTETVIGTHDQPIR----------------------------------- 101
                      +    +  H   +R                                   
Sbjct: 77  RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH 136

Query: 102 ---AVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKVFTMSLCGEKFVVGTAG 157
                    +   +++G++D  VK+WDP +  C+       ++V+++   G   V G+  
Sbjct: 137 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLD 196

Query: 158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK 217
             + +WD+     I      +L            K   ++S         +     +  +
Sbjct: 197 TSIRVWDVETGNCIH-----TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 251

Query: 218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD 277
                  H+                     N   T   DG V +WD    + +      +
Sbjct: 252 TLQGPNKHQS-----------AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300

Query: 278 TG-----ITSLCFSYDGNVLAIACS 297
           +G     +  +  S    V A+   
Sbjct: 301 SGGSGGVVWRIRASNTKLVCAVGSR 325

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 8e-09
 Identities = 34/246 (13%), Positives = 71/246 (28%), Gaps = 23/246 (9%)

Query: 55  AHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCIL 113
            H D V+ C         SG  D TLK++   T +    +  H   + + +  D +    
Sbjct: 14  GHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISG 73

Query: 114 TGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQ 173
           +      V   +         Y     V  M L  ++ V G+    + +WD+     +  
Sbjct: 74  STDRTLKVWNAETGECIHT-LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132

Query: 174 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE 233
                            + +  V  + +    V      PE +   +  + H        
Sbjct: 133 LM----GHVAAVRCVQYDGRRVVSGAYDFMVKV----WDPETETCLHTLQGH-------- 176

Query: 234 KIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
                   S   +     +G  D  + +WD      +     + +  + +      N+L 
Sbjct: 177 ---TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILV 231

Query: 294 IACSYN 299
              + +
Sbjct: 232 SGNADS 237

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 5e-07
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 14/153 (9%)

Query: 27  SNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFN 86
               +++ S D ++ ++D+   N          +            SG  D T+K++D  
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 245

Query: 87  TQTETVIGTHDQP--IRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK---- 140
           T                        N ++T S D +VK+WD ++   + N    +     
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 305

Query: 141 --VFTMSLCGEKFVV------GTAGRKVCIWDL 165
             V+ +     K V       GT   K+ + D 
Sbjct: 306 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 2e-11
 Identities = 24/289 (8%), Positives = 66/289 (22%), Gaps = 19/289 (6%)

Query: 15  EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN------LRLKYAHSDPVLDCCFQDA 68
            + + AV  +  +    + +     V ++DI++                + +  C     
Sbjct: 51  GEVVCAVTISNPTR--HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 69  VHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS 128
             +   G + +             I           Y+  ++      +           
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168

Query: 129 SRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC 188
                   +  +  T                    D     + ++        +      
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE------GRQLQQHD 222

Query: 189 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN 248
           F ++   +     G      +++             +++          V ++ F     
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE----SCVLSLKFAYCGK 278

Query: 249 TFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
            F + G D  +N W       + Q     + + S   S D   +     
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSG 326

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 13/134 (9%), Positives = 46/134 (34%), Gaps = 3/134 (2%)

Query: 35  SWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETVI 93
             D  V  +D+       ++  +  +    +         G     +++   N   +  +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261

Query: 94  GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTM--SLCGEKF 151
             H+  + +++++      ++   D  +  W       +    +   V +   S+  +  
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYI 321

Query: 152 VVGTAGRKVCIWDL 165
           V G+  +K  ++++
Sbjct: 322 VTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 2/111 (1%)

Query: 16  DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFSG 74
             I ++ + P      +            +   +    + H   VL   F        S 
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEV-LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST 283

Query: 75  GLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
           G D  L  +                + + + S +   I+TGS D    +++
Sbjct: 284 GKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 18/87 (20%), Positives = 24/87 (27%), Gaps = 6/87 (6%)

Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWD---GFNKKRLCQ--FHRYDTGITSLCFSYDGNV 291
            V A++         TG   G V +WD     NK  + Q      D  I S     DG  
Sbjct: 53  VVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111

Query: 292 LAIACSYNYELETPPDPIPPNNIFIRH 318
           L +    +           P       
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELT 138

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 60.6 bits (145), Expect = 5e-11
 Identities = 28/313 (8%), Positives = 68/313 (21%), Gaps = 28/313 (8%)

Query: 2   VDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWD-CNVSLYDITNNNLRLKYAHSDPV 60
            D    Y L  P    I  V+   ++    +  + +   + +YD           +   V
Sbjct: 29  QDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNV 88

Query: 61  LDC------------CFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDE 108
                            +  + +          +        T     D           
Sbjct: 89  FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL 148

Query: 109 VNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLC--GEKFVVGTAGRKVCIWDLR 166
            +    G    ++ ++D    +     T+    +  +     +     +        D  
Sbjct: 149 KHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 208

Query: 167 NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGR--AAVEYLDTGPEMQKMKYAFKC 224
            + +  +        +   I   P                A EY       +        
Sbjct: 209 VLNFSFEVVS-----KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP 263

Query: 225 HRIKEDGIEK--IYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS 282
              +     +  I   +     +    +      G +  +D   +K           +T 
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTD 319

Query: 283 LCFSYDGNVLAIA 295
           L  S D   + + 
Sbjct: 320 LRLSADRKTVMVR 332

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.5 bits (139), Expect = 2e-10
 Identities = 31/287 (10%), Positives = 72/287 (25%), Gaps = 14/287 (4%)

Query: 15  EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR--LKYAHSDPVLDCCFQDAVHSF 72
              ITA+  + +  + L ++  + +++ +DI+           H+  +           F
Sbjct: 12  NKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 73  SGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
           +   D  LK+                 + +      V+     +     K     S   +
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130

Query: 133 GNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNK 192
                      ++L  +K           +        +   + S            P +
Sbjct: 131 TEVPISYNSSCVALSNDKQ---------FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181

Query: 193 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT 252
              V  S  G   V    +   +                      V  +S+  +    AT
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241

Query: 253 GGSDGYVNIWD--GFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
           G  D  V +W+    +   +     +     +     +   +  A  
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 6e-04
 Identities = 7/106 (6%), Positives = 26/106 (24%), Gaps = 3/106 (2%)

Query: 96  HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLC---GEKFV 152
           H++ I A+  S +   + +   +  +  WD  +      +          +         
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 153 VGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS 198
             +    + +      G    +  ++                  ++
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 116

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 6e-04
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 63  CCFQDAVHSFSGGLDCTLKMFDFNTQTETVI----GTHDQPIRAVEYSDEVNCILTGSWD 118
               D V   +G LD ++ +++ N  ++  I          + +V + +E   I++   D
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TTIVSAGQD 289

Query: 119 TSVKMWD 125
           +++K W+
Sbjct: 290 SNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 0.003
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG-ITSLCFSYDGNVLAIA 295
            + A+S   +  T  +  ++G++N WD         F       IT +  +  G++  ++
Sbjct: 14  AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73

Query: 296 CSYN 299
              +
Sbjct: 74  WDDH 77

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 3e-10
 Identities = 34/295 (11%), Positives = 87/295 (29%), Gaps = 56/295 (18%)

Query: 12  SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCF----- 65
           S    G+  +++    +Q +++   D  + ++D      +     H+  VL   +     
Sbjct: 12  SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 66  ----------------------------------QDAVHSFSGGLDCTLKMFDFNTQTET 91
                                              +     +   D ++ ++D  + T+ 
Sbjct: 69  ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128

Query: 92  VIGTHDQPIRAVEYSDEVNC--ILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFTMSLCG 148
            +       RA     + +   I++ S D ++K+W+  +   V         +  +    
Sbjct: 129 TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 188

Query: 149 EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEY 208
              V G++   + +WD+     +          +        + +  V  + +G+  V  
Sbjct: 189 RLVVSGSSDNTIRLWDIECGACLRVLE----GHEELVRCIRFDNKRIVSGAYDGKIKVWD 244

Query: 209 LDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD 263
           L    + +          + E        V  + F +      +   D  + IWD
Sbjct: 245 LVAALDPRAPAGTLCLRTLVEHS----GRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 26/202 (12%), Positives = 57/202 (28%), Gaps = 21/202 (10%)

Query: 96  HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFTMSLCGEKFVVG 154
             + +  ++Y D    I++G  D ++K+WD  +  C    T     V  +       + G
Sbjct: 14  TSKGVYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 71

Query: 155 TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE 214
           ++   V +WD+     +                           SI       +    P 
Sbjct: 72  SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSI-----AVWDMASPT 126

Query: 215 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 274
              ++     HR                   +     +   D  + +W+    + +   +
Sbjct: 127 DITLRRVLVGHRA-----------AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 175

Query: 275 RYDTGITSLCFSYDGNVLAIAC 296
            +  GI   C  Y   ++    
Sbjct: 176 GHKRGIA--CLQYRDRLVVSGS 195

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 37/222 (16%), Positives = 68/222 (30%), Gaps = 19/222 (8%)

Query: 56  HSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILT 114
            S  V    + D     SG  D T+K++D NT     ++  H   +  ++Y DE   I  
Sbjct: 14  TSKGVYCLQY-DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITG 71

Query: 115 GSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQR 174
            S  T                   + V  +       V  +  R + +WD+ +   I  R
Sbjct: 72  SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 131

Query: 175 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEK 234
           R          +  F + +  V +S +    V    T   ++ +                
Sbjct: 132 RVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLN-------------GH 177

Query: 235 IYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY 276
              +  + +        +G SD  + +WD      L     +
Sbjct: 178 KRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGH 217

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 3e-10
 Identities = 43/347 (12%), Positives = 87/347 (25%), Gaps = 65/347 (18%)

Query: 15  EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-------KYAHSDPVLDCCFQD 67
           +  I +V      N F ++ S D  + ++D    +           + H   +       
Sbjct: 14  DADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 68  AVHSF--------SGGLDCTLKMFDFNTQTETVIGT-----------HDQPIRAV----- 103
           A+           +      L  +    + ET                     A+     
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130

Query: 104 EYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGE-------------- 149
                 + ++      +  +W         N    +   T+ L G               
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190

Query: 150 ------KFVVGTAGRKVCIWD-LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG 202
                     G     V I +            + S+   +  I+         L +I  
Sbjct: 191 DISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250

Query: 203 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI------YPVNAISFHQEYNTFATGGSD 256
            +      T  E +  +               +        V ++SF+    T  + G D
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310

Query: 257 GYVNIWDGFNKKRLCQFHRYDTGI----TSLCFSYDGNVLAIACSYN 299
           G +  WD   K+R+   + +   I      L     G+ LA    ++
Sbjct: 311 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 2e-09
 Identities = 46/328 (14%), Positives = 94/328 (28%), Gaps = 55/328 (16%)

Query: 18  ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQDAVHSFSGGL 76
           IT ++F    + +++  + D  + +YD  N    L+   H   V    +       SG  
Sbjct: 16  ITCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGST 72

Query: 77  DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCI---LTGSWDTSVKMWDPRSSRCVG 133
           D T++++D      T +              E   I   +TGS D ++ +W       V 
Sbjct: 73  DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 132

Query: 134 NYTQPDK------------------------VFTMSLCGEKFVVGTAGRKVCIWDLR--- 166
           ++ +                           V T+S  G   V G+    + +WD+    
Sbjct: 133 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK 192

Query: 167 --------------------NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAV 206
                                   I    +++++                 + +      
Sbjct: 193 CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 252

Query: 207 EYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266
           +              +  +            ++AI+     +     GS+   NI++  +
Sbjct: 253 DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRS 312

Query: 267 KKRLCQFHRYDTG-ITSLCFSYDGNVLA 293
            K +      D   I S+ F     V A
Sbjct: 313 GKLVHANILKDADQIWSVNFKGKTLVAA 340

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 8e-06
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 7/128 (5%)

Query: 56  HSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILT 114
           H   V+ C   +  +  +G  D  ++++D   +     +  HD  + A++Y+     +++
Sbjct: 11  HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVS 69

Query: 115 GSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKF-----VVGTAGRKVCIWDLRNMG 169
           GS D +V++WD +   C   +   +         E       V G+    + +W L    
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 170 YIMQRRES 177
            +    E 
Sbjct: 130 SVPDHGEE 137

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 5e-05
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
           +  + F   Y    TG  D  + ++D  NKK L Q   +D G+ +L +++ G +++ +  
Sbjct: 16  ITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 73

Query: 298 YNYELETPPDPIPPNNIFIRHVTDQ 322
               +         +     + T +
Sbjct: 74  RTVRVWDIKKGCCTHVFEGHNSTVR 98

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 4/163 (2%)

Query: 85  FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
           F  Q  T+ G     I  +++ D  N ++TG+ D  ++++D  + + +   +     V+ 
Sbjct: 1   FVPQRTTLRGHMTSVITCLQFED--NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58

Query: 144 MSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG 202
           +    G   V G+  R V +WD++           +   +   I  + N +  V  S + 
Sbjct: 59  LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118

Query: 203 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ 245
              V  L     +           +     E  Y V  +  H 
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 9e-04
 Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 36  WDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT--QTETVI 93
            D ++  +D  + + +  Y H++      F  + +    G +    +++  +       I
Sbjct: 261 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI 320

Query: 94  GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
                 I +V +  +   +     D    +  
Sbjct: 321 LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI 351

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 3e-09
 Identities = 36/302 (11%), Positives = 81/302 (26%), Gaps = 24/302 (7%)

Query: 18  ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL----RLKYAHSDPVLDCCF---QDAVH 70
            T + + P +N           V   D  ++ +    +     S  V    F   + + +
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 71  SFSGGLDCTLKMFDFNT---------QTETVIGTHDQPIRAVEYS--DEVNCILTGSWDT 119
             SG     + ++ +             ++       PI  + +       C++    D 
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139

Query: 120 SVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSL 179
                   S   +G  +   +        +   + +         +   G   +      
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS---- 195

Query: 180 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN 239
                  K     +    S   G   +              + +  +  ED  E +    
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255

Query: 240 AISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF--HRYDTGITSLCFSYDGNVLAIACS 297
                 +   FAT G+D  + +WD    K + ++   +   G   +     GN   I+ S
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315

Query: 298 YN 299
            +
Sbjct: 316 LD 317

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 110 NCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFTMSLC-----GEKFVVGTAGRKVCIW 163
               T   D ++++WD  +S+CV  +T    ++    +        + +  +    +  +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

Query: 164 DL 165
           +L
Sbjct: 324 EL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 21/261 (8%), Positives = 57/261 (21%), Gaps = 13/261 (4%)

Query: 16  DGITAVKFAPNSNQFLLAS-SWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSG 74
             +T VKF+P      L S      V ++  T +        +           +   S 
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 75  GLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN 134
             +          +    +        ++      +  +        +     +    G+
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS 183

Query: 135 YTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQG 194
                         ++           +    + G  +    S  K      K     + 
Sbjct: 184 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243

Query: 195 YVLSSIEGRAAV--------EYLDTGPEMQKMK----YAFKCHRIKEDGIEKIYPVNAIS 242
                   +  +        +   T      ++       KC +      +++       
Sbjct: 244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 303

Query: 243 FHQEYNTFATGGSDGYVNIWD 263
                    +   DG +N ++
Sbjct: 304 VATGNGRIISLSLDGTLNFYE 324

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.9 bits (130), Expect = 3e-09
 Identities = 26/289 (8%), Positives = 67/289 (23%), Gaps = 18/289 (6%)

Query: 19  TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCF-QDAVHSFSGGL 76
             +   P  ++    +    +V    + +      Y  HS             +  SG +
Sbjct: 21  VVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 77  DCTLKMFDFN-------TQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS 129
              ++++D         T      G         E                V ++D  +S
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138

Query: 130 RCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCF 189
                                F + +      +       +  +            ++  
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198

Query: 190 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT 249
           P+   +  +  +G   +     G +    +     +            V  +++  +   
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG------SVFGLTWSPDGTK 252

Query: 250 FATGGSDGYVNIWDGFNKKRLCQFHRY-DTGITSLCFSYDGNVLAIACS 297
            A+  +D  + IW+    K               L   +    L    +
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 110 NCILTGSWDTSVKMWDPRSSRCV----GNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDL 165
             I + S D ++K+W+  + +            D+   +    +  V  +A   +   + 
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (122), Expect = 3e-08
 Identities = 34/280 (12%), Positives = 84/280 (30%), Gaps = 19/280 (6%)

Query: 15  EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSG 74
             GITA+   P     L++ S+D  +  +  ++    +   HS+ ++           S 
Sbjct: 13  NKGITALTVNP-----LISGSYDGRIMEWSSSS----MHQDHSNLIVSLDN-------SK 56

Query: 75  GLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN 134
             + +   +D   +   +          V  ++        + D  + +    +   + +
Sbjct: 57  AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 116

Query: 135 YTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQG 194
                    +SL      VG            +   +    ++ L+ +   I   P++  
Sbjct: 117 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 176

Query: 195 YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG 254
                + G+  +  L +                      K     A     E +  ATG 
Sbjct: 177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAIS--WKPAEKGANEEEIEEDLVATGS 234

Query: 255 SDGYVNIWD-GFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
            D  + I+      K +   + +  G+ +L +     +++
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVS 274

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.5 bits (82), Expect = 0.003
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 23  FAPNSNQFLLASSWDCNVSLYDITNNN--LRLKYAHSDPVLDCCFQDAVHSFSGGLDCTL 80
                   +   S D N+ +Y +      ++   AH D V +  ++      S G D  +
Sbjct: 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACI 281

Query: 81  KMFD 84
           K ++
Sbjct: 282 KRWN 285

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 16/139 (11%), Positives = 36/139 (25%), Gaps = 1/139 (0%)

Query: 1   MVDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDP 59
             D    ++ +       T    A         +++   +   D+ T      +    D 
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 60  VLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDT 119
                  +   + + G    L+ FD                 +V  S + + +  G    
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301

Query: 120 SVKMWDPRSSRCVGNYTQP 138
            +  +D  +    G    P
Sbjct: 302 DLAAYDAETLEKKGQVDLP 320

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 8e-05
 Identities = 22/302 (7%), Positives = 67/302 (22%), Gaps = 30/302 (9%)

Query: 17  GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDP----------------- 59
                  AP         +   ++   D+       +   S P                 
Sbjct: 35  TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK 94

Query: 60  --VLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSW 117
              +         +        + ++D  T +        + I  + ++ + + +     
Sbjct: 95  TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR 154

Query: 118 DTSVKMW-DPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRE 176
           D  V               +   + +        +    +   +          I     
Sbjct: 155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214

Query: 177 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY 236
           ++ +     +     +       I             + +             +    I 
Sbjct: 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIK 274

Query: 237 ------PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF---HRYDTGITSL-CFS 286
                    +++   + +T   GG+ G +  +D    ++  Q          + S+  F+
Sbjct: 275 RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFT 334

Query: 287 YD 288
            D
Sbjct: 335 RD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 20/220 (9%), Positives = 57/220 (25%), Gaps = 10/220 (4%)

Query: 112 ILTGSWDTSVKMWDPRSSRCVGNYTQPDKV-----FTMSLCGEK-FVVGTAGRKVCIWDL 165
           IL  +    + + D          T  D         ++  G   +        +   DL
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 166 RNMGYIMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC 224
                + +   S+ + + + +     +  G  L+  E    +E      +  ++      
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC 284
              +    E    +  +++ ++ +     G D +V   +            ++       
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET---Y 180

Query: 285 FSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTDQET 324
              D   +      +  + TP      +         +  
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 12/114 (10%), Positives = 30/114 (26%), Gaps = 2/114 (1%)

Query: 28  NQFLLASSWDCNVSLYDITNNNLRLK--YAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDF 85
            Q    +         D+       +     ++            +   G+   L  +D 
Sbjct: 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL 279

Query: 86  NTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD 139
             +        D     V +  + + +  G     + +++P +   V N   P 
Sbjct: 280 KQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 17/220 (7%), Positives = 42/220 (19%), Gaps = 16/220 (7%)

Query: 112 ILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLC----GEK-FVVGTAGRKVCIWDLR 166
           ++  ++  ++ + D  S     +   PDK    +          +V+      +   DL 
Sbjct: 11  MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70

Query: 167 NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR 226
                  +        +   +   +   + +S            T               
Sbjct: 71  -----TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLE 125

Query: 227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK------RLCQFHRYDTGI 280
           +                            DG + +      K      +           
Sbjct: 126 VFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185

Query: 281 TSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVT 320
                + D        S  +E           +      T
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 225

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 25/292 (8%), Positives = 75/292 (25%), Gaps = 12/292 (4%)

Query: 9   SLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDA 68
           S   P + G      AP++    + ++   ++   D+           S    +      
Sbjct: 33  SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92

Query: 69  VHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS 128
             + S       +++     T+ +   +      +E     + +        V+ +    
Sbjct: 93  SFAIS---PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP----VRTFPMPR 145

Query: 129 SRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC 188
              +        ++       K  V T         L    +  +   +         + 
Sbjct: 146 QVYLMRAADDGSLYVAGPDIYKMDVKTG---KYTVALPLRNWNRKGYSAPDVLYFWPHQS 202

Query: 189 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK-YAFKCHRIKEDGIEKIYPVNAISFHQEY 247
             ++   + +    +   +   T   +        K  +        +  +         
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 262

Query: 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN 299
           +     G    +  +D   +K +   +  D     + F   G+ L +  ++N
Sbjct: 263 DPNQIYGVLNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFN 313

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 13/258 (5%), Positives = 62/258 (24%), Gaps = 23/258 (8%)

Query: 16  DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLD---CCFQDAVHSF 72
             + +   +P+  +     +    ++ + +        ++ +D +       F      +
Sbjct: 89  RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVY 148

Query: 73  SGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
                    ++        +     +   A+   +      +                  
Sbjct: 149 LMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR---- 204

Query: 133 GNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNK 192
             ++    +       +              DL+      Q      +     ++   + 
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD- 263

Query: 193 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT 252
               +  +  R A   L     ++                   +    ++F ++ +    
Sbjct: 264 -PNQIYGVLNRLAKYDLKQRKLIKA--------------ANLDHTYYCVAFDKKGDKLYL 308

Query: 253 GGSDGYVNIWDGFNKKRL 270
           GG+   + +++    +++
Sbjct: 309 GGTFNDLAVFNPDTLEKV 326

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.1 bits (108), Expect = 3e-06
 Identities = 23/249 (9%), Positives = 51/249 (20%), Gaps = 24/249 (9%)

Query: 72  FSGGLDCTLKMFDFNT-QTETVIGTHDQPI-------RAVEYSDEVNCILTGSW-DTSVK 122
             G     +++FD  T      I   D P          +       C+L   +  ++  
Sbjct: 90  AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149

Query: 123 MWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKF- 181
                 +                       +G+    +   DL           +     
Sbjct: 150 GLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209

Query: 182 -QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV-- 238
                     N  G ++ ++        +       K          K D          
Sbjct: 210 QNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269

Query: 239 ------NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG--ITSLCFSYDGN 290
                 + I      ++ +   +    +       +          G    ++  + DG 
Sbjct: 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS---GPISNGHDSDAIIAAQDGA 326

Query: 291 VLAIACSYN 299
               A S  
Sbjct: 327 SDNYANSAG 335

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 33/248 (13%), Positives = 57/248 (22%), Gaps = 24/248 (9%)

Query: 73  SGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILT----------GSWDTSVK 122
            G     +++FD  T   T         R +  +      LT           S   +V 
Sbjct: 73  RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVG 132

Query: 123 MWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQ 182
           + D            PD         + F +      +        G            +
Sbjct: 133 VVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 192

Query: 183 ----TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP- 237
                            V  +  G+     L +G               + DG       
Sbjct: 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 252

Query: 238 --------VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDG 289
                           + + +    +  +V + D    +RL +F      I S+  S D 
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDE 311

Query: 290 NVLAIACS 297
             L  A S
Sbjct: 312 KPLLYALS 319

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 23/327 (7%), Positives = 73/327 (22%), Gaps = 43/327 (13%)

Query: 2   VDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSW---------DCNVSLYDITNNNLRL 52
           +D +    +       +     A + +    AS+             V ++D        
Sbjct: 33  IDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA 92

Query: 53  KY-----------AHSDPVLDCCFQDAVHSFSGGLDCTLKMFD---------FNTQTETV 92
                         +            +  +       + + D          +      
Sbjct: 93  DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH 152

Query: 93  IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN--------YTQPDKVFTM 144
           I         +   D     +    + + ++                     +  ++   
Sbjct: 153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP 212

Query: 145 SLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRA 204
           +  G+   +  +                +R +       + +          L   +   
Sbjct: 213 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE 272

Query: 205 AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT--FATGGSDGYVNIW 262
                 +   +       +     E G    + +++I+  Q+     +A    D  + I 
Sbjct: 273 WRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIH 328

Query: 263 DGFNKKRLCQFHRYDTGITSLCFSYDG 289
           D  + + L   ++   G   +  +  G
Sbjct: 329 DAESGEELRSVNQLGHGPQVITTADMG 355

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.71
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.71
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.66
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.64
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.48
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.35
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.33
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.28
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.25
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.1
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.95
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.77
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.75
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.71
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.71
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.42
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.38
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.33
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.33
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.07
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.0
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.96
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.94
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.9
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.79
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.69
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.48
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.31
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.71
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.91
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.56
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.75
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.45
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.44
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.36
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.22
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.66
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.56
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.53
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.53
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	92.43
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.35
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.57
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	91.3
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.23
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.75
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	88.51
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.72
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	82.71
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	81.61

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-37  Score=266.17  Aligned_cols=268  Identities=17%  Similarity=0.227  Sum_probs=212.7

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE------EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL------RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF   85 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~   85 (327)
                      .|.+.|++++|+|+ +++|++|+ ||.|+|||+.+++.      .....|.+.|.+++|+ ++.++++|+.|++|++||+
T Consensus        49 ~H~~~V~~v~fs~~-g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~  126 (337)
T d1gxra_          49 NHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             CCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             CCCCcEEEEEECCC-CCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccc
Confidence            57789999999995 58999987 89999999976431      1223688899999995 7889999999999999999


Q ss_pred             CCCce---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCCeEEEEeCCCe
Q psy11885         86 NTQTE---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGEKFVVGTAGRK  159 (327)
Q Consensus        86 ~~~~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~~  159 (327)
                      .....   ..+..|...|..++|+|++..+++++.|+.|++||++++++......+ ..+  +++++.+..+++++.|+.
T Consensus       127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~  206 (337)
T d1gxra_         127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            76543   235678899999999999999999999999999999998877665542 334  445567889999999999


Q ss_pred             EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      |++||+++.+.+...   .......++++.|+++.+++++.++.+.++........     ....|         ..+|.
T Consensus       207 v~i~d~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~---------~~~i~  269 (337)
T d1gxra_         207 VRSWDLREGRQLQQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-----QLHLH---------ESCVL  269 (337)
T ss_dssp             EEEEETTTTEEEEEE---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-----EECCC---------SSCEE
T ss_pred             ccccccccceeeccc---ccccceEEEEEcccccccceeccccccccccccccccc-----ccccc---------ccccc
Confidence            999999987643221   22334577888888888888888888888665443211     11112         12588


Q ss_pred             EEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        240 AISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       240 ~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                      +++|+|++++|++|+.||.|++||..+++.+..+ .|..+|++++|||||++||+|+.++.
T Consensus       270 ~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~  329 (337)
T d1gxra_         270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred             eEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence            9999999999999999999999999999888765 46788999999999999999986543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-36  Score=264.87  Aligned_cols=285  Identities=18%  Similarity=0.263  Sum_probs=213.0

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE-------------------ecCCCceeeEEEe-CCceEE
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK-------------------YAHSDPVLDCCFQ-DAVHSF   72 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------------------~~h~~~v~~~~~~-~~~~~~   72 (327)
                      .|.+.|+||+|+|+ +++||+|+ |++|+|||+.+++....                   ..|...|.+++|+ ++.+++
T Consensus        60 ~H~~~V~~l~fs~d-g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          60 DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCcEEEEEECCC-CCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            37889999999995 57899886 99999999988764322                   1356679999995 788999


Q ss_pred             EEecCCcEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEe---cCC
Q psy11885         73 SGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMS---LCG  148 (327)
Q Consensus        73 sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~---~~~  148 (327)
                      +|+.||+|++||...+... ...+|...|.++++++++..+++++.++.+++||.++...............+.   .++
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  217 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCC
Confidence            9999999999999887654 466799999999999999999999999999999999888776665544443322   346


Q ss_pred             CeEEEEeCCCeEEEEECCCCccceeeecc-----cceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeee
Q psy11885        149 EKFVVGTAGRKVCIWDLRNMGYIMQRRES-----SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFK  223 (327)
Q Consensus       149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  223 (327)
                      ..+++++.|+.|++||+++..........     .......++.+++++..+++++.++.+.+|.+..............
T Consensus       218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  297 (388)
T d1erja_         218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS  297 (388)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred             CeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccc
Confidence            78999999999999999876643322111     1122356788889888888888888888866543322111110000


Q ss_pred             eeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEE------ECCCCCEEEEEEc
Q psy11885        224 CHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC------FSYDGNVLAIACS  297 (327)
Q Consensus       224 ~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~------fspdg~~la~~~~  297 (327)
                      . ........|...|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++      |+||+++||+|+.
T Consensus       298 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~  376 (388)
T d1erja_         298 G-TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG  376 (388)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred             c-ceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeC
Confidence            0 00000001122588999999999999999999999999999999999999999999987      5789999999986


Q ss_pred             ccc
Q psy11885        298 YNY  300 (327)
Q Consensus       298 ~~~  300 (327)
                      ++.
T Consensus       377 Dg~  379 (388)
T d1erja_         377 DCK  379 (388)
T ss_dssp             TSE
T ss_pred             CCE
Confidence            654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-35  Score=250.43  Aligned_cols=273  Identities=20%  Similarity=0.273  Sum_probs=213.5

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .|++.|++|+|+|+ +.+|++|+.|++|+|||+.++++. ....|..+|.+++++ ++..+++++.++.+..|+......
T Consensus        15 GH~~~I~~l~~sp~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (317)
T d1vyhc1          15 GHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC   93 (317)
T ss_dssp             CCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccc
Confidence            37889999999995 579999999999999999998854 445699999999995 778888999999999999877655


Q ss_pred             e-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-c--EEEEecCCCeEEEEeCCCeEEEEECC
Q psy11885         91 T-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-K--VFTMSLCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        91 ~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~d~~v~iwD~~  166 (327)
                      . .+..|...+.++.++++++.+++++.|+.+++||+++++.+..+..+. .  ...+.+++..+++++.|+.|++||++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~  173 (317)
T d1vyhc1          94 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA  173 (317)
T ss_dssp             EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeec
Confidence            3 456788999999999999999999999999999999998888776533 2  34556678899999999999999998


Q ss_pred             CCccceeeecccceeeeEEeEEee--------------------CCCceEEEeecCeEEEEEccCCcccccceeeeeeee
Q psy11885        167 NMGYIMQRRESSLKFQTRCIKCFP--------------------NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR  226 (327)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~  226 (327)
                      +.+.........  ....++.+.+                    .+..+++++.++.+.++....+.    ....+..|.
T Consensus       174 ~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~~~  247 (317)
T d1vyhc1         174 TKECKAELREHR--HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHD  247 (317)
T ss_dssp             TCCEEEEECCCS--SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE----EEEEEECCS
T ss_pred             cceeeEEEecCC--CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc----EEEEEeCCC
Confidence            765432221111  1112222222                    22345566667776665544332    122223332


Q ss_pred             eccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885        227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       227 ~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                               .+|.+++|+|++++|++|+.||.|+|||+.+++.+..+.+|..+|++|+|||++++||+|+.++..
T Consensus       248 ---------~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i  313 (317)
T d1vyhc1         248 ---------NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV  313 (317)
T ss_dssp             ---------SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred             ---------CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeE
Confidence                     258899999999999999999999999999999999999999999999999999999999876543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-35  Score=252.07  Aligned_cols=306  Identities=25%  Similarity=0.428  Sum_probs=215.2

Q ss_pred             cCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----EEEEecCCCceeeEEEe-C-CceEEEEecCCcEEEE
Q psy11885         10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LRLKYAHSDPVLDCCFQ-D-AVHSFSGGLDCTLKMF   83 (327)
Q Consensus        10 ~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~h~~~v~~~~~~-~-~~~~~sgs~Dg~i~vw   83 (327)
                      ....|++.|++|+|+|+ +.+||+|+.|++|+|||+..+.    +.....|..+|.+++|+ + +..+++|+.|++|++|
T Consensus         6 ~~~~h~d~I~~l~fsp~-~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             cCCCCCCCEEEEEEeCC-CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            45788999999999995 5799999999999999987543    34445799999999995 3 4578899999999999


Q ss_pred             EcCCCceee-ee-cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeee----e-----CCCcEEEEecCCCeEE
Q psy11885         84 DFNTQTETV-IG-THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY----T-----QPDKVFTMSLCGEKFV  152 (327)
Q Consensus        84 d~~~~~~~~-~~-~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~----~-----~~~~~~~~~~~~~~~~  152 (327)
                      ++....... .. .+........+.++...+++++.|+++++||++++......    .     .......+...++.++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI  164 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred             ecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence            998765433 22 23334455566778889999999999999998764432221    1     1223456677788999


Q ss_pred             EEeCCCeEEEEECCCCccceee-ecccceeeeEEeEEee-CCCceEEEeecCeEEEEEccCCccccc--ceeeeeeeeec
Q psy11885        153 VGTAGRKVCIWDLRNMGYIMQR-RESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQK--MKYAFKCHRIK  228 (327)
Q Consensus       153 ~~~~d~~v~iwD~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~h~~~  228 (327)
                      +++.|+.|++||++........ ..........+....+ ....+++++.++...++.++.......  ....+..+...
T Consensus       165 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T d1yfqa_         165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN  244 (342)
T ss_dssp             EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred             eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence            9999999999999866532211 1111112223334444 345677788888888877764432211  11122222222


Q ss_pred             cCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCC---
Q psy11885        229 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETP---  305 (327)
Q Consensus       229 ~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~---  305 (327)
                      .....+..++++++|+|++++||||+.||+|+|||+.+++.+.++..++ .+..++|+|+|++||+|++++....+.   
T Consensus       245 ~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred             cCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence            2233455678999999999999999999999999999999998886543 445788999999999999887554442   


Q ss_pred             -CCCCCCCcEEEE
Q psy11885        306 -PDPIPPNNIFIR  317 (327)
Q Consensus       306 -~~~~~~~~~~~~  317 (327)
                       ...++...||++
T Consensus       324 ~~~~~~~~~i~~~  336 (342)
T d1yfqa_         324 QTIELNASSIYII  336 (342)
T ss_dssp             TTSCCCCCEEEEE
T ss_pred             CCccCCCCeEEEE
Confidence             333555666654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-34  Score=253.29  Aligned_cols=242  Identities=12%  Similarity=0.099  Sum_probs=184.0

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE---EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL---RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~   91 (327)
                      ++|+|++|+|+ +.+||+|+.|+.|+|||..+++.   ..+.+|.++|.+++|+ ++.++++|+.|++|++||++++...
T Consensus         8 ~pIt~~~~s~d-g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           8 EPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCeEEEEECCC-CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            67999999995 57999999999999999988763   2345799999999995 7889999999999999999876532


Q ss_pred             ---eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeee---e-C-CCcE--EEEecCCCeEEEEeCCCeEE
Q psy11885         92 ---VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY---T-Q-PDKV--FTMSLCGEKFVVGTAGRKVC  161 (327)
Q Consensus        92 ---~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~---~-~-~~~~--~~~~~~~~~~~~~~~d~~v~  161 (327)
                         .+..|...|.+++|+|+++.|++|+.|++|++|++.........   . . ...+  ..+++++..|++++.|++|+
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence               34578899999999999999999999999999998765432221   1 1 2234  44566788999999999999


Q ss_pred             EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885        162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI  241 (327)
Q Consensus       162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  241 (327)
                      +||+.............                              +...............|         ...|.++
T Consensus       167 v~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~---------~~~v~~~  207 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTP------------------------------WGSKMPFGELMFESSSS---------CGWVHGV  207 (371)
T ss_dssp             EEECCCTTTSCCCCCBT------------------------------TBSCCCTTCEEEECCCC---------SSCEEEE
T ss_pred             EEeeccCcccccccccc------------------------------ccccccceeeeeeccCc---------cCcEEEE
Confidence            99987543110000000                              00000000011111111         1247899


Q ss_pred             EEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       242 ~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      +|+|++++|++++.|++|++||+.+++.+..+..|..+|.+++|+|||++||+|..
T Consensus       208 ~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d  263 (371)
T d1k8kc_         208 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD  263 (371)
T ss_dssp             EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETT
T ss_pred             EeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcC
Confidence            99999999999999999999999999999889889899999999999999987754

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-32  Score=238.24  Aligned_cols=275  Identities=19%  Similarity=0.300  Sum_probs=210.9

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ..|.+.|++|+|+|+ +.+|++|+.||+|+|||+.+++.. ....|..+|.+++|+ ++.++++|+.|+.+++|+.....
T Consensus        52 ~GH~~~I~~l~~s~~-~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~  130 (340)
T d1tbga_          52 RGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSC
T ss_pred             CCCCCCEEEEEECCC-CCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccc
Confidence            358899999999995 579999999999999999998854 445689999999995 78899999999999999987543


Q ss_pred             e-----eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-C--cEEEEecCCCeEEEEeCCCeEE
Q psy11885         90 E-----TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-D--KVFTMSLCGEKFVVGTAGRKVC  161 (327)
Q Consensus        90 ~-----~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~d~~v~  161 (327)
                      .     ..+..|.......... .+..+.....|.....++............. .  ......+.+..+++++.|+.|+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  209 (340)
T d1tbga_         131 GNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             SCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             cccccceecccccccccccccc-cccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEE
Confidence            2     2345676665555443 4567888899999999998776554443332 2  2234445677899999999999


Q ss_pred             EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885        162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI  241 (327)
Q Consensus       162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  241 (327)
                      +||+++.+.+.....  ......+++++|+++.+++++.++.+.++.........  .....         .+..++.++
T Consensus       210 i~d~~~~~~~~~~~~--h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~--~~~~~---------~~~~~i~~~  276 (340)
T d1tbga_         210 LWDVREGMCRQTFTG--HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM--TYSHD---------NIICGITSV  276 (340)
T ss_dssp             EEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCT---------TCCSCEEEE
T ss_pred             EEECCCCcEEEEEeC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccc--ccccc---------cccCceEEE
Confidence            999998765433222  22345788899998888898888888876554332211  11101         111257899


Q ss_pred             EEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885        242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       242 ~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                      +|+|++++|++|+.||.|++||+.+++.+..+.+|..+|++|+|+|||++||+|+.++..
T Consensus       277 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             EECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             EECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEE
Confidence            999999999999999999999999999999999999999999999999999999866543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.5e-33  Score=242.02  Aligned_cols=280  Identities=11%  Similarity=0.106  Sum_probs=207.1

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .+.+.+..++++|++ ..|+.++ ++.|.+||+.+.+. ....+|...|.+++|+ ++.++++|+.||+|++||+.+...
T Consensus        15 ~~r~~~~~~a~~~~g-~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~   92 (311)
T d1nr0a1          15 TARGTAVVLGNTPAG-DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH   92 (311)
T ss_dssp             CCTTCCCCCEECTTS-SEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred             CCCCCeEEEEEcCCC-CEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc
Confidence            344567789999965 5666654 77899999998764 4455799999999995 788999999999999999987653


Q ss_pred             ---eeeecCCccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeeeeeCC-CcEE--EEecCCC-eEEEEeCCCeEE
Q psy11885         91 ---TVIGTHDQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGNYTQP-DKVF--TMSLCGE-KFVVGTAGRKVC  161 (327)
Q Consensus        91 ---~~~~~h~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~~~~~-~~~~--~~~~~~~-~~~~~~~d~~v~  161 (327)
                         ..+..|..+|.+++|+|+++.+++++.  +..+++|++++++....+..+ ..+.  .++++++ .+++|+.|+.|+
T Consensus        93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~  172 (311)
T d1nr0a1          93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA  172 (311)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence               346789999999999999999999986  456999999998887776643 3344  4555666 478899999999


Q ss_pred             EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885        162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI  241 (327)
Q Consensus       162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  241 (327)
                      +||+++.+.......  ......++.++|+++.+++++.++.+.+|............    ...  .....|..+|.++
T Consensus       173 i~d~~~~~~~~~~~~--~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~----~~~--~~~~~h~~~V~~~  244 (311)
T d1nr0a1         173 IFEGPPFKFKSTFGE--HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE----DDS--LKNVAHSGSVFGL  244 (311)
T ss_dssp             EEETTTBEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB----CTT--SSSCSSSSCEEEE
T ss_pred             ccccccccccccccc--ccccccccccCcccccccccccccccccccccccccccccc----ccc--ccccccccccccc
Confidence            999998764433222  22345788899998888888888888886655433211111    000  0011223368999


Q ss_pred             EEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCc---ceEEEEECCCCCEEEEEEccccccCC
Q psy11885        242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT---GITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       242 ~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~---~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      +|+|++++|++|+.||+|+|||+++++.+..+..+..   .+.++.|  ++++|++++.++....+
T Consensus       245 ~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~w  308 (311)
T d1nr0a1         245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFV  308 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEE
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEE
Confidence            9999999999999999999999999998887765543   3444555  55678888866654443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.1e-32  Score=232.03  Aligned_cols=276  Identities=12%  Similarity=0.108  Sum_probs=199.0

Q ss_pred             cCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEeCCceEEEEecCCcEEEEEcCC
Q psy11885         10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        10 ~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      ...-|.+.|++|+|+|+ +++|++|+.|++|++||+++++.....  .|...|.+++|++...+++++.|+.+++|++..
T Consensus         7 ~~~GH~~~V~~l~~s~d-g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~   85 (299)
T d1nr0a2           7 VRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG   85 (299)
T ss_dssp             EECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSS
T ss_pred             EcCCCCCCcEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCC
Confidence            34558899999999995 589999999999999999998865443  588899999997666788899999999999875


Q ss_pred             Cce----eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeee-eCCCcEEEEecCCCeEEEEeCCCeEEE
Q psy11885         88 QTE----TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY-TQPDKVFTMSLCGEKFVVGTAGRKVCI  162 (327)
Q Consensus        88 ~~~----~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~v~i  162 (327)
                      ...    .....+...+.+++++++++.+++++ ++.+++|+...  ..... .......+++++++.+++++.|+.|++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~  162 (299)
T d1nr0a2          86 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV  162 (299)
T ss_dssp             SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEECSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence            432    22345777899999999998766655 57899999543  22221 223345667788889999999999999


Q ss_pred             EECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885        163 WDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS  242 (327)
Q Consensus       163 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  242 (327)
                      ||+++...... ..........++++.|++..+++++.++.+.++.......... ...+..|         ..+|.+++
T Consensus       163 ~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-~~~~~~h---------~~~v~~l~  231 (299)
T d1nr0a2         163 YKLSGASVSEV-KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH-TNSWTFH---------TAKVACVS  231 (299)
T ss_dssp             EEEETTEEEEE-EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC-CCCCCCC---------SSCEEEEE
T ss_pred             ccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc-ccccccc---------cccccccc
Confidence            99986543211 1111223457788888888888888888887765543322111 1111222         23689999


Q ss_pred             EecCCCeEEEecCCCeEEEEeCCCceee--eecCcCC-cceEEEEECCCCCEEEEEEccccc
Q psy11885        243 FHQEYNTFATGGSDGYVNIWDGFNKKRL--CQFHRYD-TGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       243 ~spd~~~lasgs~dg~i~iWd~~~~~~~--~~~~~~~-~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                      |+|++++|++|+.||+|++||+.++...  .....|. ..+.+++| |++++|++++.+...
T Consensus       232 ~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i  292 (299)
T d1nr0a2         232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNI  292 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCE
T ss_pred             ccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEE
Confidence            9999999999999999999998876432  2223333 45666655 667899998865443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-30  Score=222.69  Aligned_cols=235  Identities=15%  Similarity=0.204  Sum_probs=187.9

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--E-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--L-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      ..|++.|++++|+|+ +++|++++.|++|++||+....  . .....|...+..++|+ ++..+++++.|+.|++|++.+
T Consensus        94 ~~h~~~I~~v~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_          94 LNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             SCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cCCCCcEEEEEEcCC-CCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            457789999999996 5789999999999999987654  2 2334678889999995 678889999999999999988


Q ss_pred             Ccee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEE--EecCCCeEEEEeCCCeEEEEE
Q psy11885         88 QTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFT--MSLCGEKFVVGTAGRKVCIWD  164 (327)
Q Consensus        88 ~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~v~iwD  164 (327)
                      +... ....|...|.+++|+++++.+++++.|+.|++||+++++.+..+.....+.+  +++.++.+++++.|+.+++||
T Consensus       173 ~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d  252 (337)
T d1gxra_         173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH  252 (337)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccc
Confidence            7654 4567899999999999999999999999999999999998888777666655  456688899999999999999


Q ss_pred             CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885        165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH  244 (327)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  244 (327)
                      +++.+....   ........+++++|+++.+++++.++.+.+|....+...    ..+ .|         ..+|.+++|+
T Consensus       253 ~~~~~~~~~---~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~----~~~-~~---------~~~v~~~~~s  315 (337)
T d1gxra_         253 VNKPDKYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI----FQS-KE---------SSSVLSCDIS  315 (337)
T ss_dssp             TTSSCEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE----EEE-EC---------SSCEEEEEEC
T ss_pred             ccccccccc---cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEE----EEc-cC---------CCCEEEEEEe
Confidence            987764321   122234577888999888888888888777655443221    111 11         1258899999


Q ss_pred             cCCCeEEEecCCCeEEEEeC
Q psy11885        245 QEYNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       245 pd~~~lasgs~dg~i~iWd~  264 (327)
                      |++++||+|+.||+|+|||+
T Consensus       316 ~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         316 VDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEEE
Confidence            99999999999999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-30  Score=221.81  Aligned_cols=269  Identities=17%  Similarity=0.241  Sum_probs=187.3

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCcee
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~   91 (327)
                      .|++.|.+ +++++ +++|+|||.|++|+|||+.++++. ...+|..+|.+++|++ ..+++|+.|+++++|+.......
T Consensus        14 GH~~~V~s-~~~~~-g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~-~~l~s~s~D~~~~~~~~~~~~~~   90 (342)
T d2ovrb2          14 GHDDHVIT-CLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD-NIIISGSTDRTLKVWNAETGECI   90 (342)
T ss_dssp             CSTTSCEE-EEEEE-TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET-TEEEEEETTSCEEEEETTTTEEE
T ss_pred             CcCCceEE-EEEEC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC-Cccccceecccccccccccccce
Confidence            47778754 25553 468999999999999999998864 4457999999999975 48999999999999997654321


Q ss_pred             e-eecCCccEE--------------------------------------EEEEeCCCCEEEEEECCCeEEEEeCCCCcee
Q psy11885         92 V-IGTHDQPIR--------------------------------------AVEYSDEVNCILTGSWDTSVKMWDPRSSRCV  132 (327)
Q Consensus        92 ~-~~~h~~~V~--------------------------------------~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~  132 (327)
                      . ...+...+.                                      ..........+++++.|+.|++||++..+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  170 (342)
T d2ovrb2          91 HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL  170 (342)
T ss_dssp             EEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEE
T ss_pred             ecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceee
Confidence            1 000111110                                      1122334456788899999999999888877


Q ss_pred             eeeeCC-CcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccC
Q psy11885        133 GNYTQP-DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT  211 (327)
Q Consensus       133 ~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  211 (327)
                      ..+..+ .....+.+++..+++++.|+.|++||++..+.+.....+.  ....+  +.++++.+++++.++.+.+|....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~--~~~~~~~l~s~s~d~~i~iwd~~~  246 (342)
T d2ovrb2         171 HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ--SLTSG--MELKDNILVSGNADSTVKIWDIKT  246 (342)
T ss_dssp             EEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC--SCEEE--EEEETTEEEEEETTSCEEEEETTT
T ss_pred             EEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccc--cceeE--EecCCCEEEEEcCCCEEEEEeccc
Confidence            776653 3456677889999999999999999999876543222211  11233  345566788888888888765543


Q ss_pred             CcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC-----cCCcceEEEEEC
Q psy11885        212 GPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-----RYDTGITSLCFS  286 (327)
Q Consensus       212 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~-----~~~~~v~~l~fs  286 (327)
                      .....    .+..+.      .+...+.++++  ++++|++|+.||+|+|||+++++.+..+.     +|...|++++|+
T Consensus       247 ~~~~~----~~~~~~------~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s  314 (342)
T d2ovrb2         247 GQCLQ----TLQGPN------KHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS  314 (342)
T ss_dssp             CCEEE----EECSTT------SCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred             ccccc----cccccc------eeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEEC
Confidence            32211    111111      11113445554  56789999999999999999998877653     466679999999


Q ss_pred             CCCCEEEEEEcccc
Q psy11885        287 YDGNVLAIACSYNY  300 (327)
Q Consensus       287 pdg~~la~~~~~~~  300 (327)
                      |++.+||+|+.++.
T Consensus       315 ~~~~~la~g~~dGt  328 (342)
T d2ovrb2         315 NTKLVCAVGSRNGT  328 (342)
T ss_dssp             SSEEEEEEECSSSS
T ss_pred             CCCCEEEEEeCCCC
Confidence            99999999976653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.2e-29  Score=218.70  Aligned_cols=241  Identities=12%  Similarity=0.130  Sum_probs=180.8

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE---EEEecCCCceeeEEEe-CCceEEEEec--CCcEEEEEc
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL---RLKYAHSDPVLDCCFQ-DAVHSFSGGL--DCTLKMFDF   85 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~h~~~v~~~~~~-~~~~~~sgs~--Dg~i~vwd~   85 (327)
                      ..|.+.|++++|+|+ +++|++|+.||+|+|||+.+++.   .....|..+|.+++|+ ++..+++++.  +..+++|++
T Consensus        55 ~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~  133 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF  133 (311)
T ss_dssp             CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred             cCCCCCEEEEEEeCC-CCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccc
Confidence            457789999999996 68999999999999999988652   2344689999999995 6778888875  466999999


Q ss_pred             CCCce-eeeecCCccEEEEEEeCCCCE-EEEEECCCeEEEEeCCCCceeeeeeCC-Cc--EEEEecCCCeEEEEeCCCeE
Q psy11885         86 NTQTE-TVIGTHDQPIRAVEYSDEVNC-ILTGSWDTSVKMWDPRSSRCVGNYTQP-DK--VFTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        86 ~~~~~-~~~~~h~~~V~~l~~~~~~~~-l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~d~~v  160 (327)
                      +++.. ..+..|...|.+++|+|+++. |++|+.|+.|++||++++++...+..+ ..  .+.++++++.+++++.|+.|
T Consensus       134 ~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v  213 (311)
T d1nr0a1         134 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI  213 (311)
T ss_dssp             TTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccc
Confidence            87765 456789999999999999874 889999999999999999888777653 23  34566678899999999999


Q ss_pred             EEEECCCCccceeeeccc-----ceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeE
Q psy11885        161 CIWDLRNMGYIMQRRESS-----LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI  235 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  235 (327)
                      ++||+++...........     +.....+++++|+++.+++++.++.+.+|....+..    ...+..|...       
T Consensus       214 ~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~----~~~l~~~~~~-------  282 (311)
T d1nr0a1         214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV----EKTIPVGTRI-------  282 (311)
T ss_dssp             EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----EEEEECCSSG-------
T ss_pred             cccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcE----EEEEECCCCc-------
Confidence            999998765432211111     122357888999988889888888887765544332    1222222111       


Q ss_pred             EEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885        236 YPVNAISFHQEYNTFATGGSDGYVNIWDGF  265 (327)
Q Consensus       236 ~~v~~v~~spd~~~lasgs~dg~i~iWd~~  265 (327)
                       ....+++.++++.|++++.||.|++||.+
T Consensus       283 -~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         283 -EDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             -GGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             -cceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence             11234555667789999999999999963

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.9e-29  Score=214.26  Aligned_cols=270  Identities=18%  Similarity=0.240  Sum_probs=177.6

Q ss_pred             CCCC-eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCcee
Q psy11885         14 PEDG-ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        14 ~~~~-I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~   91 (327)
                      |.+. |+|++|+   +++|++|+.|++|+|||+.++++. ...+|.++|.+++|+++..++||+.|++|++|++......
T Consensus        11 H~~~vitc~~~~---~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~   87 (355)
T d1nexb2          11 HMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT   87 (355)
T ss_dssp             CSSSCEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEE
T ss_pred             cCCCcEEEEEEC---CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccccc
Confidence            5555 5787775   358999999999999999999854 4557999999999988889999999999999999877654


Q ss_pred             ee---ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee------------------------CCCcEEEE
Q psy11885         92 VI---GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT------------------------QPDKVFTM  144 (327)
Q Consensus        92 ~~---~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~------------------------~~~~~~~~  144 (327)
                      ..   ..+...+....+.+++..+++++.|++|++||+++........                        ....+...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  167 (355)
T d1nexb2          88 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV  167 (355)
T ss_dssp             EEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEE
T ss_pred             cccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccc
Confidence            32   2233445666778899999999999999999998765432211                        01123445


Q ss_pred             ecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccc------
Q psy11885        145 SLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM------  218 (327)
Q Consensus       145 ~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------  218 (327)
                      .++++.++++..|+.|++||+++.+.+......  .....+..+.+....+++++.++.+.++...........      
T Consensus       168 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~  245 (355)
T d1nexb2         168 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL  245 (355)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ccccceeeeecccceeeeeecccccceeeeecc--ccccccccccccceeeecccccceEEeeecccccccccccccccc
Confidence            566888999999999999999876543221111  111233344444444444444444444333221111000      


Q ss_pred             ----------------------------eeeeeeeeeccCCeeeEEEeeE-EEEecCCCeEEEecCCCeEEEEeCCCcee
Q psy11885        219 ----------------------------KYAFKCHRIKEDGIEKIYPVNA-ISFHQEYNTFATGGSDGYVNIWDGFNKKR  269 (327)
Q Consensus       219 ----------------------------~~~~~~h~~~~~~~~~~~~v~~-v~~spd~~~lasgs~dg~i~iWd~~~~~~  269 (327)
                                                  ...+..|.         ..+.+ .+++|++.+|++| .|++|+|||+++++.
T Consensus       246 v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~  315 (355)
T d1nexb2         246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH---------TNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKL  315 (355)
T ss_dssp             CCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEEC---------TTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCB
T ss_pred             ccccccccceeeeeecccccccccccccceeccccc---------CCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCE
Confidence                                        00011111         11333 3567777777666 489999999999988


Q ss_pred             ee-ecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        270 LC-QFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       270 ~~-~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      +. .+.+|..+|++++|+|+ .++++++.++
T Consensus       316 ~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg  345 (355)
T d1nexb2         316 VHANILKDADQIWSVNFKGK-TLVAAVEKDG  345 (355)
T ss_dssp             CCSCTTTTCSEEEEEEEETT-EEEEEEESSS
T ss_pred             EEEEecCCCCCEEEEEEcCC-eEEEEEECCC
Confidence            75 45678889999999997 4666666554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-29  Score=214.83  Aligned_cols=259  Identities=16%  Similarity=0.183  Sum_probs=197.4

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCcee
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET   91 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~   91 (327)
                      ..|.++|++++|+|     |++|+.||+|++||+.++.    ..|...|.+++++++..+++++.|+++++|++...   
T Consensus        10 ~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~----~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~---   77 (287)
T d1pgua2          10 SGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH----QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH---   77 (287)
T ss_dssp             CCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE----CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE---
T ss_pred             CCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC----CCCCCCEEEEEecCCCeEEEEeecccccccccccc---
Confidence            45889999999986     8999999999999987643    47889999999988888999999999999987542   


Q ss_pred             eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCC-eEEEEECCCCcc
Q psy11885         92 VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGR-KVCIWDLRNMGY  170 (327)
Q Consensus        92 ~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~v~iwD~~~~~~  170 (327)
                         .....+..+.+++++..+++ ..++.+.+|+..+++.+..+.......++.++++.+++++.++ .|++|++...+.
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~  153 (287)
T d1pgua2          78 ---EFGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV  153 (287)
T ss_dssp             ---ECSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred             ---ccccceeeeeeccCCceEEE-eecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccce
Confidence               22345678888888766655 5567789999999998888877777788888888888887765 799999976543


Q ss_pred             ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC----
Q psy11885        171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE----  246 (327)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd----  246 (327)
                      ... ..........+++++|++..+++++.++.+.+|........   ...+..|         ..+|.+++|+|+    
T Consensus       154 ~~~-~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~---~~~~~~h---------~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         154 SFD-LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK---TSRWAFR---------TSKINAISWKPAEKGA  220 (287)
T ss_dssp             EEE-CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE---ECCSCCC---------SSCEEEEEECCCC---
T ss_pred             eee-eeeccCCceeEEEeccCccccccccccccccceeecccccc---ccccccc---------ccccceeeeccccccc
Confidence            222 12223334578889999988999999998887655433211   1111122         225888999875    


Q ss_pred             ------CCeEEEecCCCeEEEEeCCC-ceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885        247 ------YNTFATGGSDGYVNIWDGFN-KKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       247 ------~~~lasgs~dg~i~iWd~~~-~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~  300 (327)
                            +.+||+|+.|++|+|||+.+ .+.+..+.+|...|++++|+|++ .|++++.+..
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~  280 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADAC  280 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSC
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCe
Confidence                  46899999999999999876 45566677899999999999987 5777776543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-29  Score=225.32  Aligned_cols=289  Identities=13%  Similarity=0.183  Sum_probs=192.5

Q ss_pred             ecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-------EEEEecCCCceeeEEE----e----CCceEEE
Q psy11885          9 SLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-------LRLKYAHSDPVLDCCF----Q----DAVHSFS   73 (327)
Q Consensus         9 ~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~h~~~v~~~~~----~----~~~~~~s   73 (327)
                      +....|++.|.++++++   ++++++|.|++|+|||....+       ......|...+..+..    .    +...+++
T Consensus         8 ~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            33567899999999875   489999999999999976542       2333345555443332    1    2346679


Q ss_pred             EecCCcEEEEEcCCCcee------ee-----ecCCccEEEEEEeCC-----CCEEEEEECCCeEEEEeCCCCce------
Q psy11885         74 GGLDCTLKMFDFNTQTET------VI-----GTHDQPIRAVEYSDE-----VNCILTGSWDTSVKMWDPRSSRC------  131 (327)
Q Consensus        74 gs~Dg~i~vwd~~~~~~~------~~-----~~h~~~V~~l~~~~~-----~~~l~sgs~d~~i~lwdl~~~~~------  131 (327)
                      ++.||.|++|++......      ..     ..+...+..+++.++     +.++++++.|+++++||+.....      
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            999999999997643210      01     123456777888765     36789999999999999753211      


Q ss_pred             --------e-eeee----CC--CcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeec----ccceeeeEEeEEeeCC
Q psy11885        132 --------V-GNYT----QP--DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRE----SSLKFQTRCIKCFPNK  192 (327)
Q Consensus       132 --------~-~~~~----~~--~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  192 (327)
                              + ....    ..  ....++++++ .+++|+.|++|++||+++.+.+.....    ..+.....+++++|++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  243 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG  243 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence                    0 0000    01  1223444444 788999999999999998765432211    1123346889999999


Q ss_pred             CceEEEeecCeE-EEEEccCCc--ccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee
Q psy11885        193 QGYVLSSIEGRA-AVEYLDTGP--EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR  269 (327)
Q Consensus       193 ~~~~~~~~~~~~-~i~~~~~~~--~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~  269 (327)
                      ..+++++.++.. .+..|+...  ....+..............+|...|++++|+||+++|||||.|++|+|||+.+++.
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER  323 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence            999998887652 344455432  21111100000000011123445699999999999999999999999999999999


Q ss_pred             eeecCcCCcceE----EEEECCCCCEEEEEEccccc
Q psy11885        270 LCQFHRYDTGIT----SLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       270 ~~~~~~~~~~v~----~l~fspdg~~la~~~~~~~~  301 (327)
                      +.++.+|...|.    .++|+|+|..+++++.+...
T Consensus       324 ~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  359 (393)
T d1sq9a_         324 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVK  359 (393)
T ss_dssp             EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEE
T ss_pred             EEEECCcCCcccCCccEEEECCCCCEEEEcccceEE
Confidence            999999987764    58999999999887665543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.9e-28  Score=212.23  Aligned_cols=261  Identities=18%  Similarity=0.225  Sum_probs=183.7

Q ss_pred             EEEEECCCcEEEEECCCCe-----EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee-e-----------
Q psy11885         31 LLASSWDCNVSLYDITNNN-----LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET-V-----------   92 (327)
Q Consensus        31 l~s~~~d~~i~iwd~~~~~-----~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~-~-----------   92 (327)
                      .+.+..++...+|+....+     +....+|.+.|.+++|+ ++.++++|+ |++|++||+.++... .           
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence            4567788999999976443     23445799999999996 677888876 999999999876432 1           


Q ss_pred             -------eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCCeEEEEeCCCeEEE
Q psy11885         93 -------IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGEKFVVGTAGRKVCI  162 (327)
Q Consensus        93 -------~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~~v~i  162 (327)
                             ...|...|.+++|+|++++|++|+.|+.|++||...++.+..+..+ ..+  ..+.+.+..+++++.++.+++
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~  189 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI  189 (388)
T ss_dssp             ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeee
Confidence                   1246778999999999999999999999999999999887776543 334  345566778999999999999


Q ss_pred             EECCCCccceeeecccceeeeEEeEEee-CCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885        163 WDLRNMGYIMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI  241 (327)
Q Consensus       163 wD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  241 (327)
                      ||+++...........   ...++.+++ ++..+++++.++.+.++................      ....|..+|.++
T Consensus       190 ~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~------~~~~h~~~v~~l  260 (388)
T d1erja_         190 WDLRTGQCSLTLSIED---GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE------SGTGHKDSVYSV  260 (388)
T ss_dssp             EETTTTEEEEEEECSS---CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------CCCSSCEEEE
T ss_pred             eecccccccccccccc---ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccc------cccCCCCCEEEE
Confidence            9998765432222111   123344454 445667777788877765544332211111000      001122368999


Q ss_pred             EEecCCCeEEEecCCCeEEEEeCCCceee------------eecCcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885        242 SFHQEYNTFATGGSDGYVNIWDGFNKKRL------------CQFHRYDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       242 ~~spd~~~lasgs~dg~i~iWd~~~~~~~------------~~~~~~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                      +|+|++++|++|+.||.|++||+.+++..            .....|...|++++|+|+|++|++|+.++..
T Consensus       261 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i  332 (388)
T d1erja_         261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV  332 (388)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE
T ss_pred             EECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEE
Confidence            99999999999999999999998765432            2234567789999999999999999876543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-27  Score=200.03  Aligned_cols=266  Identities=15%  Similarity=0.203  Sum_probs=187.8

Q ss_pred             CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCc
Q psy11885         11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      ++.+..+|+|++|+   +++||+|+.||+|+|||+.++++.. +.+|.++|.+++| ++.+++||+.|+.|++|++..+.
T Consensus        11 ~~~~~~~V~c~~~d---~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~-~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          11 RSETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CCSSCCCEEEEECC---SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCCCEEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec-ccceeeccccccccccccccccc
Confidence            45677899998763   4689999999999999999988654 4569999999887 56799999999999999998876


Q ss_pred             eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee---ee-CCCcEEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885         90 ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN---YT-QPDKVFTMSLCGEKFVVGTAGRKVCIWDL  165 (327)
Q Consensus        90 ~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~d~~v~iwD~  165 (327)
                      ......+... ....+.+....++++..++.+++||..+......   +. ....+....+.+..+++++.|+.|++||+
T Consensus        87 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~  165 (293)
T d1p22a2          87 MLNTLIHHCE-AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNT  165 (293)
T ss_dssp             EEEEECCCCS-CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred             cccccccccc-ccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecC
Confidence            5443322222 2334456667899999999999999987653322   22 23345666777888999999999999999


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      ++.+.+........    ....+.+++..++++..++.+.+|........    .....|.         ..+  ..+++
T Consensus       166 ~~~~~~~~~~~~~~----~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~---------~~v--~~~~~  226 (293)
T d1p22a2         166 STCEFVRTLNGHKR----GIACLQYRDRLVVSGSSDNTIRLWDIECGACL----RVLEGHE---------ELV--RCIRF  226 (293)
T ss_dssp             TTCCEEEEEECCSS----CEEEEEEETTEEEEEETTSCEEEEETTTCCEE----EEECCCS---------SCE--EEEEC
T ss_pred             CCCcEEEEEccccc----ccccccCCCCeEEEecCCCEEEEEecccceee----eeecccc---------eee--eeccc
Confidence            98765433222111    11223445567778888888877555433211    1111111         023  24667


Q ss_pred             CCCeEEEecCCCeEEEEeCCCc---------eeeeecCcCCcceEEEEECCCCCEEEEEEcccccc
Q psy11885        246 EYNTFATGGSDGYVNIWDGFNK---------KRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYEL  302 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd~~~~---------~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~  302 (327)
                      ++.+|++|+.||.|++||+...         ..+..+.+|..+|++|+|+  +++||+|+.++...
T Consensus       227 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~  290 (293)
T d1p22a2         227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTIL  290 (293)
T ss_dssp             CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEE
T ss_pred             cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEE
Confidence            8899999999999999996432         3456677899999999995  57899988665443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1e-27  Score=211.44  Aligned_cols=252  Identities=12%  Similarity=0.128  Sum_probs=175.9

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE---EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCC
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR---LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      ..|++.|++|+|+|+ +.+|++++.|++|+|||+.+++..   ....|...|.+++|+ ++..+++|+.|++|++|+++.
T Consensus        48 ~gH~~~V~~l~fsp~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~  126 (371)
T d1k8kc_          48 KEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ  126 (371)
T ss_dssp             ECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred             cCCCCCEEEEEECCC-CCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeec
Confidence            357889999999995 579999999999999999887643   233578899999995 788999999999999999876


Q ss_pred             Cce-----eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce------------------eeeeeC-CCcE--
Q psy11885         88 QTE-----TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC------------------VGNYTQ-PDKV--  141 (327)
Q Consensus        88 ~~~-----~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~------------------~~~~~~-~~~~--  141 (327)
                      ...     .....|...|.+++|+|++++|++|+.|++|++||+.....                  +..... ...+  
T Consensus       127 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  206 (371)
T d1k8kc_         127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG  206 (371)
T ss_dssp             TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE
T ss_pred             ccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEE
Confidence            542     12346888999999999999999999999999999865431                  111111 1223  


Q ss_pred             EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccccee-
Q psy11885        142 FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY-  220 (327)
Q Consensus       142 ~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-  220 (327)
                      ++++++++.+++++.|+.|++||+++...+.....+.  .+..++.+.+++..+ +++.++...++.++.......... 
T Consensus       207 ~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~s~~fs~d~~~l-a~g~d~~~~~~~~~~~~~~~~~~~~  283 (371)
T d1k8kc_         207 VCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLV-AAGHDCFPVLFTYDSAAGKLSFGGR  283 (371)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEE-EEETTSSCEEEEEETTTTEEEECCC
T ss_pred             EEeecccccccccccCCcceEEeeecccceeeeeccc--ccceeeeecCCCCEE-EEEcCCceEEEEeeCCCceEEEeee
Confidence            4566778899999999999999998766543332222  234678888876544 444466666666554321100000 


Q ss_pred             -----ee--e--------------------eeeeccCCeeeEEEeeEEEEecCC----CeEEEecCCCeEEEEeCCCc
Q psy11885        221 -----AF--K--------------------CHRIKEDGIEKIYPVNAISFHQEY----NTFATGGSDGYVNIWDGFNK  267 (327)
Q Consensus       221 -----~~--~--------------------~h~~~~~~~~~~~~v~~v~~spd~----~~lasgs~dg~i~iWd~~~~  267 (327)
                           ..  .                    ..........|..+|++++++|.+    ..|+|+|.||.|+|||+++.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             CCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             ecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence                 00  0                    000000001133468899998865    35899999999999998653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.6e-27  Score=202.16  Aligned_cols=271  Identities=13%  Similarity=0.102  Sum_probs=183.4

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCC-cEEEEECCCCe---EEEEecC-CCceeeEEEe---CCceEEEEecCCcEEEEEcC
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDC-NVSLYDITNNN---LRLKYAH-SDPVLDCCFQ---DAVHSFSGGLDCTLKMFDFN   86 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~-~i~iwd~~~~~---~~~~~~h-~~~v~~~~~~---~~~~~~sgs~Dg~i~vwd~~   86 (327)
                      .+.+++++|+|++ ..|+.++.+. .|+.||....+   .....+| ..+|.+++|+   ++.+++||+.||+|++||+.
T Consensus        17 ~~~~t~l~~~~~~-~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~   95 (325)
T d1pgua1          17 RNFTTHLSYDPTT-NAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT   95 (325)
T ss_dssp             TTCCCCCEEETTT-TEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred             CCCeEEEEECCCC-CEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeec
Confidence            3567899999975 5666665443 46777765433   3444556 4679999995   45788999999999999986


Q ss_pred             CCce---------eeeecCCccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeeeeeCC-CcEEE--EecCCC-eE
Q psy11885         87 TQTE---------TVIGTHDQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGNYTQP-DKVFT--MSLCGE-KF  151 (327)
Q Consensus        87 ~~~~---------~~~~~h~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~~~~~-~~~~~--~~~~~~-~~  151 (327)
                      .+..         .....|..+|.+++|+++++.+++++.  ++.+++|+..+++++..+..+ ..+.+  +.+.+. .+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  175 (325)
T d1pgua1          96 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS  175 (325)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred             CCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceE
Confidence            5431         123468889999999999999988765  678999999999988887653 33444  445554 47


Q ss_pred             EEEeCCCeEEEEECCCCccceeeec-ccceeeeEEeEEeeCC-CceEEEeecCeEEEEEccCCcccccceeeeeeeeecc
Q psy11885        152 VVGTAGRKVCIWDLRNMGYIMQRRE-SSLKFQTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE  229 (327)
Q Consensus       152 ~~~~~d~~v~iwD~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~  229 (327)
                      ++++.|+.+++||++..+....... ........+++++|+. ..+++++.++.+.+|....+..    ...+..|..  
T Consensus       176 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~----~~~l~~~~~--  249 (325)
T d1pgua1         176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF----LKYIEDDQE--  249 (325)
T ss_dssp             EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE----EEECCBTTB--
T ss_pred             EEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccc----ccccccccc--
Confidence            7899999999999987654322211 1222335788888865 5566677788877755443322    122222221  


Q ss_pred             CCeeeEEEeeEEEEe---cCCCeEEEecCCCeEEEEeCCCceeeeecCcC--CcceEEEEECCC-CCEEEEEEccc
Q psy11885        230 DGIEKIYPVNAISFH---QEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY--DTGITSLCFSYD-GNVLAIACSYN  299 (327)
Q Consensus       230 ~~~~~~~~v~~v~~s---pd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~--~~~v~~l~fspd-g~~la~~~~~~  299 (327)
                             ++..+.|+   |++++|++++.|++|+|||+.+++.+..+..+  ...+..++|.+. +.+|++++.++
T Consensus       250 -------~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg  318 (325)
T d1pgua1         250 -------PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG  318 (325)
T ss_dssp             -------CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred             -------ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCC
Confidence                   23333333   78999999999999999999999888766433  333444444433 34777777543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.6e-26  Score=196.58  Aligned_cols=244  Identities=16%  Similarity=0.223  Sum_probs=186.6

Q ss_pred             EECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCe
Q psy11885         43 YDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTS  120 (327)
Q Consensus        43 wd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~  120 (327)
                      |.....+...+.+|.++|.+++|+ ++.+++|||.||+|++||++++.. ..+..|...|.++++++++..++++..++.
T Consensus         3 w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~   82 (317)
T d1vyhc1           3 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMT   82 (317)
T ss_dssp             CCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccc
Confidence            433333334456899999999995 788999999999999999988765 457789999999999999999999999999


Q ss_pred             EEEEeCCCCceeeeeeCCC---cEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEE
Q psy11885        121 VKMWDPRSSRCVGNYTQPD---KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVL  197 (327)
Q Consensus       121 i~lwdl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (327)
                      +..|+....+....+..+.   ....+.++++.+++++.|+.+++||+++.+.......  ......++++.+++..+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~  160 (317)
T d1vyhc1          83 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG--HREWVRMVRPNQDGTLIAS  160 (317)
T ss_dssp             CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEcc--CCCcceeeecccCCCEEEE
Confidence            9999998877655544322   2345667788999999999999999998764332221  1223467778888888888


Q ss_pred             EeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC--------------------CCeEEEecCCC
Q psy11885        198 SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE--------------------YNTFATGGSDG  257 (327)
Q Consensus       198 ~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd--------------------~~~lasgs~dg  257 (327)
                      ++.++.+.++........    ..+..|.         ..+.+++|+|+                    +..+++|+.|+
T Consensus       161 ~~~d~~v~~~~~~~~~~~----~~~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  227 (317)
T d1vyhc1         161 CSNDQTVRVWVVATKECK----AELREHR---------HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  227 (317)
T ss_dssp             EETTSCEEEEETTTCCEE----EEECCCS---------SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             EeCCCeEEEEeeccceee----EEEecCC---------CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCC
Confidence            888888887665443221    1111111         12455555554                    45789999999


Q ss_pred             eEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885        258 YVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       258 ~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                      .|++||..+++.+..+.+|...|.+++|+|+|++||+|+.++..
T Consensus       228 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  271 (317)
T d1vyhc1         228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL  271 (317)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred             EEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeE
Confidence            99999999999999999999999999999999999999876543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=3.3e-26  Score=194.93  Aligned_cols=230  Identities=15%  Similarity=0.210  Sum_probs=167.5

Q ss_pred             EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceee-e-ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCC
Q psy11885         51 RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETV-I-GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR  127 (327)
Q Consensus        51 ~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~-~-~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~  127 (327)
                      ....+|..+|.+++|+ ++.+++||+.||+|++||++++.... + ..|...|.+++|+|+++ +++++.|+++++|+..
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSS
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccC
Confidence            4456899999999995 78899999999999999998876543 3 46899999999999986 6677889999999986


Q ss_pred             CCceee--ee--eCCCc--EEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeec
Q psy11885        128 SSRCVG--NY--TQPDK--VFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE  201 (327)
Q Consensus       128 ~~~~~~--~~--~~~~~--~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (327)
                      ......  ..  .....  ...+++++..++ ++.++.+++|+......      ........+++++|+++.+++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAV-AACYKHIAIYSHGKLTE------VPISYNSSCVALSNDKQFVAVGGQD  157 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEE-EEESSEEEEEETTEEEE------EECSSCEEEEEECTTSCEEEEEETT
T ss_pred             Ccccccccccccccccccccccccccccccc-ccccccccccccccccc------ccccccccccccccccccccccccc
Confidence            543211  11  11222  344555665554 45667999999653211      1112234677888888888888888


Q ss_pred             CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeee---ecCcCCc
Q psy11885        202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC---QFHRYDT  278 (327)
Q Consensus       202 ~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~---~~~~~~~  278 (327)
                      +.+.++........   ......|         ..+|.+++|+|++++|++++.|+.|++||..++..+.   .+..|..
T Consensus       158 g~i~~~d~~~~~~~---~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~  225 (299)
T d1nr0a2         158 SKVHVYKLSGASVS---EVKTIVH---------PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA  225 (299)
T ss_dssp             SEEEEEEEETTEEE---EEEEEEC---------SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred             cccccccccccccc---ccccccc---------ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88887655433211   1111112         1258899999999999999999999999988765543   3456788


Q ss_pred             ceEEEEECCCCCEEEEEEcccc
Q psy11885        279 GITSLCFSYDGNVLAIACSYNY  300 (327)
Q Consensus       279 ~v~~l~fspdg~~la~~~~~~~  300 (327)
                      +|++++|+|+|++||+|+.++.
T Consensus       226 ~v~~l~~s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         226 KVACVSWSPDNVRLATGSLDNS  247 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccceEEEcCCCE
Confidence            9999999999999999987654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.6e-25  Score=193.77  Aligned_cols=242  Identities=14%  Similarity=0.151  Sum_probs=164.8

Q ss_pred             CCCCCCCeeEEEEecC-CCcEEEEEECCCcEEEEECCCCe----EE-----EEecCCCceeeEEEe-CCceEEEEe--cC
Q psy11885         11 NSPPEDGITAVKFAPN-SNQFLLASSWDCNVSLYDITNNN----LR-----LKYAHSDPVLDCCFQ-DAVHSFSGG--LD   77 (327)
Q Consensus        11 ~~~~~~~I~~i~fs~~-~~~~l~s~~~d~~i~iwd~~~~~----~~-----~~~~h~~~v~~~~~~-~~~~~~sgs--~D   77 (327)
                      ..++...|++++|+|+ ++.+|++|+.||+|+|||+..++    ..     ....|.++|.+++|+ ++..+++++  .+
T Consensus        59 ~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~  138 (325)
T d1pgua1          59 TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD  138 (325)
T ss_dssp             CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred             eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecccc
Confidence            3445578999999984 45799999999999999986532    11     123578899999996 667777654  47


Q ss_pred             CcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCE-EEEEECCCeEEEEeCCCCceeeeeeC----CCcEEE--EecC-C
Q psy11885         78 CTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNC-ILTGSWDTSVKMWDPRSSRCVGNYTQ----PDKVFT--MSLC-G  148 (327)
Q Consensus        78 g~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~-l~sgs~d~~i~lwdl~~~~~~~~~~~----~~~~~~--~~~~-~  148 (327)
                      +.+++|+.+++.. ..+.+|...|.+++|++++.. +++++.|+.|++||.+..+....+..    ...+.+  ++++ +
T Consensus       139 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~  218 (325)
T d1pgua1         139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG  218 (325)
T ss_dssp             CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred             ceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccc
Confidence            7899999987765 356789999999999998764 77899999999999988775554332    223444  4443 5


Q ss_pred             CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEe-EEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee
Q psy11885        149 EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI-KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI  227 (327)
Q Consensus       149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~  227 (327)
                      ..+++++.|+.|++||+++++.+.....+......... ...+++..+++++.++.+.+|....+...    ..+..|..
T Consensus       219 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~----~~~~~~~~  294 (325)
T d1pgua1         219 EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV----QKWTLDKQ  294 (325)
T ss_dssp             CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE----EEEECCTT
T ss_pred             eeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE----EEEEecCC
Confidence            67899999999999999987754333222211111111 12256677888888888877655443321    11222211


Q ss_pred             ccCCeeeEEEeeE--EEEecCCCeEEEecCCCeEEEEeC
Q psy11885        228 KEDGIEKIYPVNA--ISFHQEYNTFATGGSDGYVNIWDG  264 (327)
Q Consensus       228 ~~~~~~~~~~v~~--v~~spd~~~lasgs~dg~i~iWd~  264 (327)
                      .   .    .+..  +.+.++ .+|++||.||+|++||+
T Consensus       295 ~---~----~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         295 Q---L----GNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             C---G----GGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             c---c----cCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            0   0    1223  334433 47899999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1e-24  Score=187.82  Aligned_cols=237  Identities=17%  Similarity=0.296  Sum_probs=182.6

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-----EEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCC
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-----LRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT   87 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~   87 (327)
                      .|.+.|++++|+|+ +.++++++.|+.+++|+.....     ......|..............+.....|...+.|....
T Consensus        95 ~~~~~v~~v~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (340)
T d1tbga_          95 LRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET  173 (340)
T ss_dssp             CSCSCEEEEEECTT-SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTT
T ss_pred             cccccEEeeEeecc-ceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccccccccccccc
Confidence            46789999999995 5799999999999999986543     22333566655555556677788888999999998876


Q ss_pred             Ccee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEEEE
Q psy11885         88 QTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        88 ~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~iw  163 (327)
                      .... ....+...+....+.+.+..+++|+.|+.|++||+++++++..+..+. .+  ++++++++.+++++.|+.|++|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~  253 (340)
T d1tbga_         174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF  253 (340)
T ss_dssp             TEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence            5543 345667789999999999999999999999999999999988876543 33  4556778899999999999999


Q ss_pred             ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885        164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF  243 (327)
Q Consensus       164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  243 (327)
                      |++..................++.+++++..+++++.++.+.+|.......    ...+..|.         .+|.+++|
T Consensus       254 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~H~---------~~V~~l~~  320 (340)
T d1tbga_         254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR----AGVLAGHD---------NRVSCLGV  320 (340)
T ss_dssp             ETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCE----EEEECCCS---------SCEEEEEE
T ss_pred             eecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcE----EEEEcCCC---------CCEEEEEE
Confidence            999776443322233333456788889888888888899888865544322    22233332         26899999


Q ss_pred             ecCCCeEEEecCCCeEEEEe
Q psy11885        244 HQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd  263 (327)
                      +|++++|||||.||+|+|||
T Consensus       321 s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         321 TDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSSCEEEEETTSCEEEEC
T ss_pred             eCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=1.2e-24  Score=189.31  Aligned_cols=272  Identities=11%  Similarity=0.031  Sum_probs=183.7

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCC--cEEEEEcCCCceeeeec
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDC--TLKMFDFNTQTETVIGT   95 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg--~i~vwd~~~~~~~~~~~   95 (327)
                      .+-.|||.+++++|+++ +|.|++||+++++... ..|...|.+++|+ ++..+++++.+.  .|++||++++....+..
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~   83 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE   83 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC
Confidence            45679994457788776 6899999999888655 4799999999995 777887766553  79999999988888888


Q ss_pred             CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecCCCeEEEEe----------CCCeEEE
Q psy11885         96 HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLCGEKFVVGT----------AGRKVCI  162 (327)
Q Consensus        96 h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~d~~v~i  162 (327)
                      |...|.+++|+|++++|++++.++.+++|++.++++...+..+   .....++++|+.++.+.          .++.+++
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v  163 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  163 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             CCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceee
Confidence            9999999999999999999999999999999998877666543   23467888888887643          3457999


Q ss_pred             EECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccc---ccceeeeee---------------
Q psy11885        163 WDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEM---QKMKYAFKC---------------  224 (327)
Q Consensus       163 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~---------------  224 (327)
                      ||+++.+....   ...........+.|+++.++.++.++...++........   .........               
T Consensus       164 ~d~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  240 (360)
T d1k32a3         164 YDMEGRKIFAA---TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM  240 (360)
T ss_dssp             EETTTTEEEEC---SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred             eccccCceeee---cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcC
Confidence            99987643211   111223355677888887777766655444321100000   000000000               


Q ss_pred             ----------------eeeccC--Ce-------eeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcc
Q psy11885        225 ----------------HRIKED--GI-------EKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG  279 (327)
Q Consensus       225 ----------------h~~~~~--~~-------~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~  279 (327)
                                      ......  ..       .+...+....+++++.++++++.++.|++||+.+++..    .+...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~  316 (360)
T d1k32a3         241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNN  316 (360)
T ss_dssp             SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEE
T ss_pred             cccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCC
Confidence                            000000  00       01111222222333446788889999999998876542    23456


Q ss_pred             eEEEEECCCCCEEEEEEccc
Q psy11885        280 ITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       280 v~~l~fspdg~~la~~~~~~  299 (327)
                      |.+++|||||++||+++.++
T Consensus       317 v~~~~~SpDG~~l~~~~~Dg  336 (360)
T d1k32a3         317 LTDLRLSADRKTVMVRKDDG  336 (360)
T ss_dssp             EEEEEECTTSCEEEEEETTS
T ss_pred             cCEEEECCCCCEEEEEECCC
Confidence            89999999999999998554

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.4e-24  Score=184.34  Aligned_cols=235  Identities=16%  Similarity=0.196  Sum_probs=164.5

Q ss_pred             EEEEecCCCcee-eEEEeCCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCC
Q psy11885         50 LRLKYAHSDPVL-DCCFQDAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR  127 (327)
Q Consensus        50 ~~~~~~h~~~v~-~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~  127 (327)
                      ...+.+|.+.|. |+.+ ++++++||+.|++|++||+.+++. ..+.+|+++|.+++|+++ +.|++|+.|++|++|++.
T Consensus         5 ~~tL~GH~~~vitc~~~-~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEEECCSSSCEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             cEEECCcCCCcEEEEEE-CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            344568988874 4444 578999999999999999988765 457889999999999985 589999999999999999


Q ss_pred             CCceeeeeeCCCc---E--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeeccc-----------ce--e------ee
Q psy11885        128 SSRCVGNYTQPDK---V--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESS-----------LK--F------QT  183 (327)
Q Consensus       128 ~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~-----------~~--~------~~  183 (327)
                      ..++.........   .  ....+++..+++++.|+.|++||+++...........           ..  .      ..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  162 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred             ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence            8877665443221   1  2234456678999999999999998654321110000           00  0      00


Q ss_pred             EEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEe
Q psy11885        184 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd  263 (327)
                      ......+++..++.+..++.+.++.......    ......+         ...+.++.|+|++..+++++.|++|++||
T Consensus       163 ~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  229 (355)
T d1nexb2         163 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC----LYILSGH---------TDRIYSTIYDHERKRCISASMDTTIRIWD  229 (355)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTTEE----EEEECCC---------SSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             cccccccccceeeeecccceeeeeecccccc----eeeeecc---------ccccccccccccceeeecccccceEEeee
Confidence            1122344555666666677666644433221    1111111         11367889999999999999999999999


Q ss_pred             CCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885        264 GFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE  301 (327)
Q Consensus       264 ~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~  301 (327)
                      ..++..+..+.+|...|.+++|+|  ++|++|+.++..
T Consensus       230 ~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i  265 (355)
T d1nexb2         230 LENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSI  265 (355)
T ss_dssp             TTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEE
T ss_pred             cccccccccccccccccccccccc--ceeeeeeccccc
Confidence            999999999999999999999975  689999876543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.6e-23  Score=174.91  Aligned_cols=240  Identities=20%  Similarity=0.245  Sum_probs=165.9

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-CCCcee-----------------------------
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HSDPVL-----------------------------   61 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~~~v~-----------------------------   61 (327)
                      ..|.+.|++++|+|   .+|++++.|+++++|+........... +...+.                             
T Consensus        54 ~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  130 (342)
T d2ovrb2          54 VGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL  130 (342)
T ss_dssp             CCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEE
T ss_pred             eCCCCCEEEEEeCC---CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccce
Confidence            45788999999997   289999999999999987655322111 111111                             


Q ss_pred             ----------eEEEeCCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885         62 ----------DCCFQDAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR  130 (327)
Q Consensus        62 ----------~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~  130 (327)
                                .........+++++.|+.|++||...... ..+..|...+..+.  +++..+++|+.|++|++||+++++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~  208 (342)
T d2ovrb2         131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGN  208 (342)
T ss_dssp             EEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCC
T ss_pred             eeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccce
Confidence                      01112344667888999999999876654 34566776665554  467899999999999999999999


Q ss_pred             eeeeeeCC-CcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEc
Q psy11885        131 CVGNYTQP-DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYL  209 (327)
Q Consensus       131 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  209 (327)
                      ++..+..+ ..+.+++++++.+++++.|+.|++||+.+.+.......... .......+.++++.+++++.++.+.+|..
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         209 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDDGTVKLWDL  287 (342)
T ss_dssp             EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTS-CSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred             eeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccce-eeeceeecccCCCeeEEEcCCCEEEEEEC
Confidence            88877654 45677888899999999999999999987654322211111 11122233445667888888888888666


Q ss_pred             cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCe----EEEEeCC
Q psy11885        210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY----VNIWDGF  265 (327)
Q Consensus       210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~----i~iWd~~  265 (327)
                      .+++....+.    ...    ...+..+|++++|+|++.+||+|+.||+    |++||..
T Consensus       288 ~tg~~i~~~~----~~~----~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         288 KTGEFIRNLV----TLE----SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             TTCCEEEEEE----ECT----TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCCEEEEEe----ccc----CCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            5543322111    100    0112236899999999999999999985    9999975

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.9e-23  Score=178.98  Aligned_cols=242  Identities=14%  Similarity=0.065  Sum_probs=164.6

Q ss_pred             EecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce----eeeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeC
Q psy11885         53 KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE----TVIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDP  126 (327)
Q Consensus        53 ~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~----~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl  126 (327)
                      ..+|.+.|.+++|+ ++.+|++||.||+||+||++++..    .....|..+|.+++|+++ +..|++|+.|++|++|++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~   86 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence            34799999999995 788999999999999999976543    223469999999999986 457999999999999999


Q ss_pred             CCCceeeeeeCCC----cEEEEecCCCeEEEEeCCCeEEEEECCCCccceeee----cccceeeeEEeEEeeCCCceEEE
Q psy11885        127 RSSRCVGNYTQPD----KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRR----ESSLKFQTRCIKCFPNKQGYVLS  198 (327)
Q Consensus       127 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  198 (327)
                      ..+..........    ...........+++++.++++++||++.........    ............+.+....++.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (342)
T d1yfqa_          87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG  166 (342)
T ss_dssp             SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeee
Confidence            8876555443221    223345567789999999999999987543221111    01111112334556677778888


Q ss_pred             eecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE-EecCCCeEEEecCCCeEEEEeCCCceeee------
Q psy11885        199 SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS-FHQEYNTFATGGSDGYVNIWDGFNKKRLC------  271 (327)
Q Consensus       199 ~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~-~spd~~~lasgs~dg~i~iWd~~~~~~~~------  271 (327)
                      +.++.+.++.+.............    ...      ..+.+.. +++++..+++++.||.+.+|+........      
T Consensus       167 ~~d~~i~~~~~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~  236 (342)
T d1yfqa_         167 MNNSQVQWFRLPLCEDDNGTIEES----GLK------YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             ESTTEEEEEESSCCTTCCCEEEEC----SCS------SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             cCCCcEEEEecccCcccceeeeec----ccc------cceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccc
Confidence            888888886655433221111110    000      0123333 45577889999999999999865432211      


Q ss_pred             ---------ecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        272 ---------QFHRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       272 ---------~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                               ....|...|++|+|||++++||+|+.++....+
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vW  278 (342)
T d1yfqa_         237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             eeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEE
Confidence                     112455578999999999999999987655544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-22  Score=170.25  Aligned_cols=232  Identities=14%  Similarity=0.233  Sum_probs=168.0

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce-
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE-   90 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~-   90 (327)
                      ..|.+.|++++|++   .+|++|+.|+.|++|++..+.......+..............++++..++.+++|+..+... 
T Consensus        52 ~~H~~~V~~v~~~~---~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (293)
T d1p22a2          52 TGHTGSVLCLQYDE---RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI  128 (293)
T ss_dssp             CCCSSCEEEEECCS---SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC
T ss_pred             ecCCCCEeeeeccc---ceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccc
Confidence            34788999998853   58999999999999999988865555444333334445677889999999999999887643 


Q ss_pred             ---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEEEEecCCCeEEEEeCCCeEEEEECC
Q psy11885         91 ---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVFTMSLCGEKFVVGTAGRKVCIWDLR  166 (327)
Q Consensus        91 ---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~iwD~~  166 (327)
                         ..+..|...|..+.+.+  ..+++++.|+.|++||+++++++..+..+. .+..+.+.+..+++++.|+.|++||++
T Consensus       129 ~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~  206 (293)
T d1p22a2         129 TLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE  206 (293)
T ss_dssp             EEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             cccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecc
Confidence               23457888888887765  678999999999999999999888877543 456677788999999999999999999


Q ss_pred             CCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccc-----ccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885        167 NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEM-----QKMKYAFKCHRIKEDGIEKIYPVNAI  241 (327)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~h~~~~~~~~~~~~v~~v  241 (327)
                      +...+........    ....+.++...+++++.++.+.+|........     ......+..|.         .+|.++
T Consensus       207 ~~~~~~~~~~~~~----~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~---------~~V~~v  273 (293)
T d1p22a2         207 CGACLRVLEGHEE----LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS---------GRVFRL  273 (293)
T ss_dssp             TCCEEEEECCCSS----CEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS---------SCCCCE
T ss_pred             cceeeeeecccce----eeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC---------CCEEEE
Confidence            8765433222111    11234456667788888888888654321111     01111222232         357888


Q ss_pred             EEecCCCeEEEecCCCeEEEEe
Q psy11885        242 SFHQEYNTFATGGSDGYVNIWD  263 (327)
Q Consensus       242 ~~spd~~~lasgs~dg~i~iWd  263 (327)
                      +|+  +++|+|||.||+|+|||
T Consensus       274 ~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         274 QFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEC--SSCEEECCSSSEEEEEC
T ss_pred             EEc--CCEEEEEecCCEEEEeC
Confidence            884  56899999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=1.9e-23  Score=181.51  Aligned_cols=155  Identities=11%  Similarity=0.055  Sum_probs=127.4

Q ss_pred             CCCCCeeEEEEecCCCcEEEEEECCC--cEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885         13 PPEDGITAVKFAPNSNQFLLASSWDC--NVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT   89 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~   89 (327)
                      .|.+.|++++|+|++ ++|++++.+.  .|++||+++++......|...+.+++|+ ++.++++++.++.+++|+++++.
T Consensus        40 ~~~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCC-CEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            577899999999964 6777666553  7999999999988888899999999995 88899999999999999998877


Q ss_pred             ee-eeecCCccEEEEEEeCCCCEEEEEE----------CCCeEEEEeCCCCceeeeeeCCCc--EEEEecCCCeEEEEeC
Q psy11885         90 ET-VIGTHDQPIRAVEYSDEVNCILTGS----------WDTSVKMWDPRSSRCVGNYTQPDK--VFTMSLCGEKFVVGTA  156 (327)
Q Consensus        90 ~~-~~~~h~~~V~~l~~~~~~~~l~sgs----------~d~~i~lwdl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  156 (327)
                      .. .+..|...+.+++|+|+|++|+.++          .++.+++||+++++..........  ...++++|+.|++++.
T Consensus       119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~  198 (360)
T d1k32a3         119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY  198 (360)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeC
Confidence            64 5667888899999999999998654          345789999998876655444333  4567888999999999


Q ss_pred             CCeEEEEECCCC
Q psy11885        157 GRKVCIWDLRNM  168 (327)
Q Consensus       157 d~~v~iwD~~~~  168 (327)
                      ++.+++||....
T Consensus       199 ~~~~~~~d~~~~  210 (360)
T d1k32a3         199 RSLDPSPDRVVL  210 (360)
T ss_dssp             CCCCCEECSSSS
T ss_pred             CCceEccccccc
Confidence            999999997654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.6e-23  Score=184.25  Aligned_cols=242  Identities=12%  Similarity=0.111  Sum_probs=155.6

Q ss_pred             ecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce-------eeeecCCccEEEEEE----eC---CCCEEEEEECCC
Q psy11885         54 YAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE-------TVIGTHDQPIRAVEY----SD---EVNCILTGSWDT  119 (327)
Q Consensus        54 ~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~-------~~~~~h~~~V~~l~~----~~---~~~~l~sgs~d~  119 (327)
                      .+|.+.|.++++. +.+++|+|.|++||+||..+...       .....|...+..+..    ..   ++..+++++.|+
T Consensus        11 ~~H~~~I~~v~~~-~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg   89 (393)
T d1sq9a_          11 KAHDADIFSVSAC-NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG   89 (393)
T ss_dssp             SCSSSCEEEEEEC-SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred             CcccCccEEEEEe-CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence            4799999999875 46899999999999999765431       112234443332221    11   234678999999


Q ss_pred             eEEEEeCCCCceeeee-----e------CCCcEE--EEecC-----CCeEEEEeCCCeEEEEECCCCcccee--------
Q psy11885        120 SVKMWDPRSSRCVGNY-----T------QPDKVF--TMSLC-----GEKFVVGTAGRKVCIWDLRNMGYIMQ--------  173 (327)
Q Consensus       120 ~i~lwdl~~~~~~~~~-----~------~~~~~~--~~~~~-----~~~~~~~~~d~~v~iwD~~~~~~~~~--------  173 (327)
                      +|++|++.........     .      ......  .+.+.     +..+++++.|+++++||+........        
T Consensus        90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  169 (393)
T d1sq9a_          90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  169 (393)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence            9999997644321111     1      111222  23332     35688999999999999853221000        


Q ss_pred             -----ee---cccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        174 -----RR---ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       174 -----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                           ..   .........+++++|++ .+++++.++.+.+|....+....    .+...   .....|..+|++++|+|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~----~~~~~---~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         170 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY----NFESQ---HSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE----EEECC---C---CCCCCEEEEEECS
T ss_pred             ceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccc----ccccc---cccccccceEEEccccc
Confidence                 00   00011123566777664 56677778888776555433211    11110   00112334799999999


Q ss_pred             CCCeEEEecCCC---eEEEEeCCCceeeeec-------------CcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885        246 EYNTFATGGSDG---YVNIWDGFNKKRLCQF-------------HRYDTGITSLCFSYDGNVLAIACSYNYELET  304 (327)
Q Consensus       246 d~~~lasgs~dg---~i~iWd~~~~~~~~~~-------------~~~~~~v~~l~fspdg~~la~~~~~~~~~~~  304 (327)
                      |+++|++|+.|+   .|++||+.+++.+..+             .+|...|++|+|||||++||+|+.+.....+
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  316 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEE
Confidence            999999999987   4999999988776655             3688899999999999999999887665555

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.7e-22  Score=180.96  Aligned_cols=266  Identities=13%  Similarity=0.058  Sum_probs=159.3

Q ss_pred             EEecCCCc-EEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceee---e---
Q psy11885         22 KFAPNSNQ-FLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETV---I---   93 (327)
Q Consensus        22 ~fs~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~---~---   93 (327)
                      .++++... ++++.+.||+|+|||+.++++.....+...+..++|+ ++.++++++.|++|++||+.+++...   +   
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence            35554333 4567778999999999999976666555678999995 89999999999999999999876432   1   


Q ss_pred             ecCCccEEEEEEeCCCCEEEE-EECCCeEEEEeCCCCceeeeeeCCC------------c--EE----------------
Q psy11885         94 GTHDQPIRAVEYSDEVNCILT-GSWDTSVKMWDPRSSRCVGNYTQPD------------K--VF----------------  142 (327)
Q Consensus        94 ~~h~~~V~~l~~~~~~~~l~s-gs~d~~i~lwdl~~~~~~~~~~~~~------------~--~~----------------  142 (327)
                      .+|...+.+++|+|||+++++ +..++++++||..+++++..+..+.            .  ..                
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~  184 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  184 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence            245566677788899998755 5689999999998877654332110            0  01                


Q ss_pred             ----------------------------EEecCCCeEEEE-eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCC
Q psy11885        143 ----------------------------TMSLCGEKFVVG-TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ  193 (327)
Q Consensus       143 ----------------------------~~~~~~~~~~~~-~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (327)
                                                  .+.+.+++++++ ..+..+.++|..+.+.+................+.....
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (426)
T d1hzua2         185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY  264 (426)
T ss_dssp             TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTT
T ss_pred             CeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCC
Confidence                                        111222332222 233345555555443321111111111111222222222


Q ss_pred             ceEEE-eecCeEEEEEccCCcccc-----cceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE-------EecCCCeEE
Q psy11885        194 GYVLS-SIEGRAAVEYLDTGPEMQ-----KMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-------TGGSDGYVN  260 (327)
Q Consensus       194 ~~~~~-~~~~~~~i~~~~~~~~~~-----~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la-------sgs~dg~i~  260 (327)
                      ..+.. ...+...+..++......     +....+..|.         ..+..++||||+++|+       +++.|++|+
T Consensus       265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~---------~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~  335 (426)
T d1hzua2         265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG---------GGSLFIKTHPKSSHLYVDTTFNPDARISQSVA  335 (426)
T ss_dssp             EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSS---------SCCCCEECCTTCSEEEECCTTCSSHHHHTCEE
T ss_pred             CceEEeccCCCceEEEeeccccccccccceEeEEEecCC---------CceeEEEcCCCCceEEEeecCCCCcccCCEEE
Confidence            22222 222222232333222110     1111222222         2478899999999999       466789999


Q ss_pred             EEeCCCceeeeec---------CcCCcceEEEEECCCCCEEEEEE
Q psy11885        261 IWDGFNKKRLCQF---------HRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       261 iWd~~~~~~~~~~---------~~~~~~v~~l~fspdg~~la~~~  296 (327)
                      |||+.+++...++         ..+...|++++|||||++|..++
T Consensus       336 vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~  380 (426)
T d1hzua2         336 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV  380 (426)
T ss_dssp             EEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEE
T ss_pred             EEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEE
Confidence            9999888765443         24556799999999999886654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4.5e-22  Score=168.07  Aligned_cols=219  Identities=14%  Similarity=0.104  Sum_probs=151.7

Q ss_pred             EEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885         51 RLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR  130 (327)
Q Consensus        51 ~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~  130 (327)
                      ..+.+|.++|.+++|+.   ++||+.||+|++||+.+.    ...|...|.+++++++ ..+++++.|++|++|++...+
T Consensus         7 ~~l~gH~~~I~~l~~s~---l~sgs~Dg~v~~Wd~~~~----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~   78 (287)
T d1pgua2           7 KTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSM----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHE   78 (287)
T ss_dssp             EEECCCSSCEEEEETTT---TEEEETTSCEEETTTTEE----ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEE
T ss_pred             EEECCCCCceEEEEECc---EEEEeCCCeEEEEECCCC----CCCCCCCEEEEEecCC-CeEEEEeeccccccccccccc
Confidence            44568999999999964   999999999999998653    3579999999999865 468999999999999976432


Q ss_pred             eeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCe-EEEEEc
Q psy11885        131 CVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGR-AAVEYL  209 (327)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~  209 (327)
                      .    ........+...+ .++..+.++.+.+|+..+.+.+.....     ...+..+.++++.+++++.++. +.+  |
T Consensus        79 ~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~v~~--~  146 (287)
T d1pgua2          79 F----GSQPKVASANNDG-FTAVLTNDDDLLILQSFTGDIIKSVRL-----NSPGSAVSLSQNYVAVGLEEGNTIQV--F  146 (287)
T ss_dssp             C----SSCEEEEEECSSS-EEEEEETTSEEEEEETTTCCEEEEEEC-----SSCEEEEEECSSEEEEEETTTSCEEE--E
T ss_pred             c----ccceeeeeeccCC-ceEEEeecccceeeeccceeeeeeccc-----cceeeeeeccCcceeeeccccceeee--e
Confidence            1    1111223333333 445556777889999887654322211     1123455667777777766553 444  3


Q ss_pred             cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeee-ecCcCCcceEEEEECCC
Q psy11885        210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC-QFHRYDTGITSLCFSYD  288 (327)
Q Consensus       210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~-~~~~~~~~v~~l~fspd  288 (327)
                      +.....  ....+..        .+..++.+++|+|++++|++|+.||.|++||..+++.+. .+..|..+|.+++|+|+
T Consensus       147 ~~~~~~--~~~~~~~--------~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~  216 (287)
T d1pgua2         147 KLSDLE--VSFDLKT--------PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPA  216 (287)
T ss_dssp             ETTEEE--EEEECSS--------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCC
T ss_pred             eccccc--eeeeeee--------ccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccc
Confidence            322211  0111100        111258899999999999999999999999999887654 35678889999999975


Q ss_pred             ----------CCEEEEEEccc
Q psy11885        289 ----------GNVLAIACSYN  299 (327)
Q Consensus       289 ----------g~~la~~~~~~  299 (327)
                                +++||+|+.++
T Consensus       217 ~~~~~~~~~~~~~l~sgs~D~  237 (287)
T d1pgua2         217 EKGANEEEIEEDLVATGSLDT  237 (287)
T ss_dssp             C------CCSCCEEEEEETTS
T ss_pred             ccccccccCCCCeeEeecCCC
Confidence                      46899988764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=4.1e-20  Score=156.23  Aligned_cols=255  Identities=13%  Similarity=0.125  Sum_probs=175.7

Q ss_pred             EEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCcee-eeecCCccEEEEEEeC
Q psy11885         31 LLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSD  107 (327)
Q Consensus        31 l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~  107 (327)
                      .++++.|++|.+||++++++.........+..++|+ ++.+++ +++.++.|++||+.++... .+..+. .+..+.+++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~   83 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP   83 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence            445678899999999999977777666678889995 777775 7778999999999987654 344444 468899999


Q ss_pred             CCCEEEE-EECCCeEEEEeCCCCceeeeeeCCCc--EEEEecCCCeEE-EEeCCCeEEEEECCCCccceeeecccceeee
Q psy11885        108 EVNCILT-GSWDTSVKMWDPRSSRCVGNYTQPDK--VFTMSLCGEKFV-VGTAGRKVCIWDLRNMGYIMQRRESSLKFQT  183 (327)
Q Consensus       108 ~~~~l~s-gs~d~~i~lwdl~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~  183 (327)
                      +++.++. +..++.+.+|+..+++....+.....  ...+++++..++ ++..++.+.+||..+.+........   ...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  160 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG---RSP  160 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC---SSE
T ss_pred             ccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC---CCc
Confidence            9986654 55678999999999988887776544  345666777765 4566889999999877543222111   124


Q ss_pred             EEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec---CCCeEE
Q psy11885        184 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG---SDGYVN  260 (327)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs---~dg~i~  260 (327)
                      ..+.+.++...++++..+......+......   .......+          ..+..++|+++++.+++++   .+++|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----------~~~~~~~~~~~g~~~~v~~~~~~~~~v~  227 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNS---VIDTVKVE----------AAPSGIAVNPEGTKAYVTNVDKYFNTVS  227 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEECS----------SEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred             eEEEeeccccceeeeccccccccccccccee---eeeccccc----------CCcceeeccccccccccccccceeeeee
Confidence            5667777777666665554333222211111   11111100          1256789999999887553   347899


Q ss_pred             EEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccC
Q psy11885        261 IWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELE  303 (327)
Q Consensus       261 iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~  303 (327)
                      +||..+++.+..+..+ ..+++++|||||++|.++++.+..+.
T Consensus       228 v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~  269 (301)
T d1l0qa2         228 MIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVS  269 (301)
T ss_dssp             EEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEE
Confidence            9999999888777543 45799999999998866665444333

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.1e-20  Score=169.53  Aligned_cols=172  Identities=12%  Similarity=0.027  Sum_probs=121.8

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee---ee---ecCCccEE
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET---VI---GTHDQPIR  101 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~---~~---~~h~~~V~  101 (327)
                      -++++.+.||+|.|||..++++.........+..++|+ ++.++++++.|++|++||+.++...   .+   ..|.+.+.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            34688889999999999999976666544578999995 8999999999999999999876532   12   23555666


Q ss_pred             EEEEeCCCCEE-EEEECCCeEEEEeCCCCceeeeeeCC------------CcE--EEEecCCCeE-EEEeCCCeEEEEEC
Q psy11885        102 AVEYSDEVNCI-LTGSWDTSVKMWDPRSSRCVGNYTQP------------DKV--FTMSLCGEKF-VVGTAGRKVCIWDL  165 (327)
Q Consensus       102 ~l~~~~~~~~l-~sgs~d~~i~lwdl~~~~~~~~~~~~------------~~~--~~~~~~~~~~-~~~~~d~~v~iwD~  165 (327)
                      +..|+|||++| ++++.+++|++||.++++++..+..+            ...  +.+++++..+ ++...++.|.+||.
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~  192 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY  192 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence            67788999986 67888999999999999887665421            111  3445666665 45567789999998


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCCCceEEEeec
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE  201 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (327)
                      .+.+....... ........+++.|++..+++++.+
T Consensus       193 ~~~~~~~~~~i-~~g~~~~~~~~spdg~~~~va~~~  227 (432)
T d1qksa2         193 TDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANA  227 (432)
T ss_dssp             TCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGG
T ss_pred             cCCCcceEEEE-cccCccccceECCCCCEEEEeccc
Confidence            76543211111 111123567788888766666543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=4.4e-18  Score=143.53  Aligned_cols=245  Identities=12%  Similarity=0.121  Sum_probs=167.4

Q ss_pred             CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceE-EEEecCCcEEEEEcCCCceee
Q psy11885         15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHS-FSGGLDCTLKMFDFNTQTETV   92 (327)
Q Consensus        15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~-~sgs~Dg~i~vwd~~~~~~~~   92 (327)
                      .+.+..++|+|++..++++++.++.|++||+.+++..........+..+++. ++..+ +++..++.+++|+..++....
T Consensus        31 g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceeee
Confidence            3568899999975434466778899999999999876555444456778884 55544 466677899999998876554


Q ss_pred             eecCCccEEEEEEeCCCCEEE-EEECCCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEEEEeCC-CeEEEEECCCC
Q psy11885         93 IGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFVVGTAG-RKVCIWDLRNM  168 (327)
Q Consensus        93 ~~~h~~~V~~l~~~~~~~~l~-sgs~d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d-~~v~iwD~~~~  168 (327)
                      ...+......++++++++.++ ++..++.+.+|+..+.+.+..+......  ..+.+++..++++..+ +.+.+|+....
T Consensus       111 ~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (301)
T d1l0qa2         111 TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (301)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccce
Confidence            444455678899999998876 4556889999999999888777655443  4456667777766654 67888887765


Q ss_pred             ccceeeecccceeeeEEeEEeeCCCceEEEeecC-eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885        169 GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG-RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY  247 (327)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~  247 (327)
                      .......   ....+..+.+.+++..++++..+. ...+..|+.....  ....+..+          ..+.+++|+|||
T Consensus       191 ~~~~~~~---~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~--~~~~~~~~----------~~~~~va~spdg  255 (301)
T d1l0qa2         191 SVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK--ITARIPVG----------PDPAGIAVTPDG  255 (301)
T ss_dssp             EEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE--EEEEEECC----------SSEEEEEECTTS
T ss_pred             eeeeccc---ccCCcceeeccccccccccccccceeeeeeeeecCCCe--EEEEEcCC----------CCEEEEEEeCCC
Confidence            4321111   112235566777777766655443 2345556654321  11111111          136789999999


Q ss_pred             CeE-EEecCCCeEEEEeCCCceeeeecC
Q psy11885        248 NTF-ATGGSDGYVNIWDGFNKKRLCQFH  274 (327)
Q Consensus       248 ~~l-asgs~dg~i~iWd~~~~~~~~~~~  274 (327)
                      ++| ++++.|++|++||+.+++.+.++.
T Consensus       256 ~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         256 KKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            976 688889999999999998887764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=3.4e-18  Score=146.29  Aligned_cols=253  Identities=10%  Similarity=0.039  Sum_probs=161.3

Q ss_pred             cEEEEEECCCcEEEEECCCCeEEEEec---CCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCcee-eeecC-----C
Q psy11885         29 QFLLASSWDCNVSLYDITNNNLRLKYA---HSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTET-VIGTH-----D   97 (327)
Q Consensus        29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~---h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~-~~~~h-----~   97 (327)
                      .|+++++.|++|+|||+.++++.....   +...+.+++|+ ++.+++ +++.++.|.+||+.+++.. .+..+     .
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            589999999999999999998654432   33457788995 677774 6778999999999987753 23322     2


Q ss_pred             ccEEEEEEeCCCCEEEEEE------------CCCeEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEEEEeCCCeEEEE
Q psy11885         98 QPIRAVEYSDEVNCILTGS------------WDTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVGTAGRKVCIW  163 (327)
Q Consensus        98 ~~V~~l~~~~~~~~l~sgs------------~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~iw  163 (327)
                      ..+..++|+|+++.++++.            .+..+.+||..+++....+....  ..+.+++++..+++++.  .+.+|
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~  159 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVM  159 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--Cccee
Confidence            3345789999999998776            46789999999998887776543  34677888888888764  47789


Q ss_pred             ECCCCccceeeecccceeeeEEeEEeeCCCceEEE-eecC---------------------eEEEEEccCCcccccceee
Q psy11885        164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS-SIEG---------------------RAAVEYLDTGPEMQKMKYA  221 (327)
Q Consensus       164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------------~~~i~~~~~~~~~~~~~~~  221 (327)
                      |..+.+...........   ....+.++...+... ...+                     ...+..++...... ....
T Consensus       160 d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  235 (337)
T d1pbyb_         160 DPEAGTLVEDKPIQSWE---AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-AMRE  235 (337)
T ss_dssp             ETTTTEEEEEECSTTTT---TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-EEEE
T ss_pred             eeecCcEEEEeecCCcc---ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE-EEEE
Confidence            99876533221111000   000011111000000 0000                     01111111111000 0000


Q ss_pred             eeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       222 ~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      +..+         ...+..++++|++.+++++  ++.|++||+.+++.+..+. +...+.+++|||||++|++++.++
T Consensus       236 ~~~~---------~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~  301 (337)
T d1pbyb_         236 VRIM---------DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             EEEC---------SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSS
T ss_pred             ecCC---------CcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCC
Confidence            0000         0124567889999888876  5899999999999888774 445678999999999999986543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=3.9e-17  Score=140.13  Aligned_cols=259  Identities=9%  Similarity=0.062  Sum_probs=157.5

Q ss_pred             EEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceee-eec
Q psy11885         21 VKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETV-IGT   95 (327)
Q Consensus        21 i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~-~~~   95 (327)
                      ++|++ ++++|++++.|++|.+||+.++++....  .|...+.+++|+ ++.+++ +++.++.|++||+.+++... +..
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            47888 5689999999999999999999975543  456667889995 677775 66678999999999876532 211


Q ss_pred             ------CCccEEEEEEeCCCCEEEEEE------------CCCeEEEEeCCCCceeeee---eCCCc--EEEEecCCCeEE
Q psy11885         96 ------HDQPIRAVEYSDEVNCILTGS------------WDTSVKMWDPRSSRCVGNY---TQPDK--VFTMSLCGEKFV  152 (327)
Q Consensus        96 ------h~~~V~~l~~~~~~~~l~sgs------------~d~~i~lwdl~~~~~~~~~---~~~~~--~~~~~~~~~~~~  152 (327)
                            +...+..++|+|||+++++++            .++.+.+||..+++....+   ..+..  .......+ .++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  159 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLY  159 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS-CEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC-EEE
Confidence                  122456789999999988765            4778999998877654432   22222  22223333 343


Q ss_pred             EEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee-cC-----------------------eEEEEE
Q psy11885        153 VGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI-EG-----------------------RAAVEY  208 (327)
Q Consensus       153 ~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------------~~~i~~  208 (327)
                      +.  ++.+.+||+.+++.+........   .....+.|++..+..... .+                       ...+..
T Consensus       160 ~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (346)
T d1jmxb_         160 VA--GPDIYKMDVKTGKYTVALPLRNW---NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  234 (346)
T ss_dssp             EE--SSSEEEECTTTCCEEEEECSTTC---CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             Ee--CCcceEEEccCCCEEEEEecCCC---ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEE
Confidence            33  35588899887654322111110   011112222211111110 11                       111111


Q ss_pred             ccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCC
Q psy11885        209 LDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD  288 (327)
Q Consensus       209 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspd  288 (327)
                      ++...... .......|         ...+..+.++|++..++.++. +.|++||..+++.+..+. +...+++++||||
T Consensus       235 ~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~D  302 (346)
T d1jmxb_         235 VDLKTGKT-HTQEFADL---------TELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKK  302 (346)
T ss_dssp             EETTTCCE-EEEEEEEC---------SSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSS
T ss_pred             EECCCCce-EEEEeecc---------cceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCC
Confidence            22111000 00000111         012567788899888887754 679999999998887764 3446899999999


Q ss_pred             CCEEEEEEcc
Q psy11885        289 GNVLAIACSY  298 (327)
Q Consensus       289 g~~la~~~~~  298 (327)
                      |++|++++.+
T Consensus       303 G~~l~v~~~d  312 (346)
T d1jmxb_         303 GDKLYLGGTF  312 (346)
T ss_dssp             SSCEEEESBS
T ss_pred             CCEEEEEeCC
Confidence            9999999754

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=8.2e-17  Score=137.69  Aligned_cols=267  Identities=10%  Similarity=0.095  Sum_probs=162.7

Q ss_pred             EEEEEECCCcEEEEECCCC-e--EEEEecCCCceeeEEEe-CCceEEEEe-cCCcEEEEEcCCCcee--e--eecCCccE
Q psy11885         30 FLLASSWDCNVSLYDITNN-N--LRLKYAHSDPVLDCCFQ-DAVHSFSGG-LDCTLKMFDFNTQTET--V--IGTHDQPI  100 (327)
Q Consensus        30 ~l~s~~~d~~i~iwd~~~~-~--~~~~~~h~~~v~~~~~~-~~~~~~sgs-~Dg~i~vwd~~~~~~~--~--~~~h~~~V  100 (327)
                      .+++++.|++|++|++... .  +.....|.+.+..++|+ ++.+|++++ .|+.|++|++......  .  ...+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4567778999999998653 2  34556788899999995 778886554 5899999999865432  1  12334456


Q ss_pred             EEEEEeCCCCEEEEEEC-CCeEEEEeCCCCceeeeee---CC--CcEEEEecCCCeEEEEe-CCCeEEEEECCCCcccee
Q psy11885        101 RAVEYSDEVNCILTGSW-DTSVKMWDPRSSRCVGNYT---QP--DKVFTMSLCGEKFVVGT-AGRKVCIWDLRNMGYIMQ  173 (327)
Q Consensus       101 ~~l~~~~~~~~l~sgs~-d~~i~lwdl~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~-~d~~v~iwD~~~~~~~~~  173 (327)
                      ..++|+|||++|++++. +++|++|+...........   ..  .....++++++.++++. .+..+.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            78999999999999875 6789999877655433222   11  22356777888777665 456899999876432211


Q ss_pred             ee----cccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC
Q psy11885        174 RR----ESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN  248 (327)
Q Consensus       174 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~  248 (327)
                      ..    .......++.+++.+.......... .+...++.+......  .......+... ...........++++|+++
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~s~d~~  242 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN--IECVQTLDMMP-ENFSDTRWAADIHITPDGR  242 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC--CEEEEEEECSC-TTCCSCCCEEEEEECTTSS
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccc--eeeeeeeeeee-cCCCccccceeEEEecccC
Confidence            11    1111122356667766655444432 334444444332211  11110111100 0111112345688999998


Q ss_pred             eEE-EecCCCeEEEEeCCCceeeeec---CcCCcceEEEEECCCCCEEEEEEccc
Q psy11885        249 TFA-TGGSDGYVNIWDGFNKKRLCQF---HRYDTGITSLCFSYDGNVLAIACSYN  299 (327)
Q Consensus       249 ~la-sgs~dg~i~iWd~~~~~~~~~~---~~~~~~v~~l~fspdg~~la~~~~~~  299 (327)
                      ++. ++..++++.+|+..........   ......+++++|||||++|++++.+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~  297 (333)
T d1ri6a_         243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS  297 (333)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT
T ss_pred             ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC
Confidence            765 4556789999987654333222   22334567899999999998887543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.7e-17  Score=141.90  Aligned_cols=241  Identities=10%  Similarity=0.022  Sum_probs=147.8

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-CC-----CceeeEEEe-CCceEEEEe------------c
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HS-----DPVLDCCFQ-DAVHSFSGG------------L   76 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~-----~~v~~~~~~-~~~~~~sgs------------~   76 (327)
                      ..+.+++|+|++..++++++.++.|.+||+.++++..... +.     ..+..++|+ ++..+++++            .
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccc
Confidence            4678999999654334566789999999999998654332 22     233466774 667776554            4


Q ss_pred             CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc--EEEEecC-------
Q psy11885         77 DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK--VFTMSLC-------  147 (327)
Q Consensus        77 Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~--~~~~~~~-------  147 (327)
                      +..+.+||..++.......+...+..++|+++|+++++++.+  +.+||..+++....+.....  ...+.+.       
T Consensus       114 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (337)
T d1pbyb_         114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             ccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeecc
Confidence            678889999887665444445667889999999999998754  67899998887665532110  0000110       


Q ss_pred             -----------------CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEcc
Q psy11885        148 -----------------GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLD  210 (327)
Q Consensus       148 -----------------~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  210 (327)
                                       .........++.+.+||+.+......... ..........+.++...  +...++.+.++...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~i~v~d~~  268 (337)
T d1pbyb_         192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR-IMDVFYFSTAVNPAKTR--AFGAYNVLESFDLE  268 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE-ECSSCEEEEEECTTSSE--EEEEESEEEEEETT
T ss_pred             ccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec-CCCcceEEEEecccceE--EEEccccEEEEECC
Confidence                             00111112344688888876643211111 11111233334444333  33334555554443


Q ss_pred             CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc
Q psy11885        211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR  275 (327)
Q Consensus       211 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~  275 (327)
                      ........    . +.         ..+.+++|+|||++|++++.|++|++||..+++.+.++..
T Consensus       269 ~~~~~~~~----~-~~---------~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         269 KNASIKRV----P-LP---------HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTEEEEEE----E-CS---------SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCcEEEEE----c-CC---------CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            32211111    0 00         1367899999999999999999999999999998877653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.71  E-value=5.9e-16  Score=137.93  Aligned_cols=101  Identities=12%  Similarity=-0.005  Sum_probs=76.2

Q ss_pred             eEEEEecCCcEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee--eeCCCc--EEE-
Q psy11885         70 HSFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN--YTQPDK--VFT-  143 (327)
Q Consensus        70 ~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~--~~~~~~--~~~-  143 (327)
                      .+++.+.||+|++||+.+++.. .+..|. .+..++|+|||+++++++.|++|++||+.++++...  +.....  -.. 
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            4468888999999999998763 555554 589999999999999999999999999998875543  222211  122 


Q ss_pred             ---EecCCCeEEE-EeCCCeEEEEECCCCccc
Q psy11885        144 ---MSLCGEKFVV-GTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus       144 ---~~~~~~~~~~-~~~d~~v~iwD~~~~~~~  171 (327)
                         ++++|+++++ +..++.+++||..+....
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~  144 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK  144 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCcccee
Confidence               2346787655 458899999999876543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.7e-15  Score=135.31  Aligned_cols=184  Identities=12%  Similarity=-0.012  Sum_probs=124.8

Q ss_pred             EEEEecCCcEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee--eeeeCCCc--EEE--
Q psy11885         71 SFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV--GNYTQPDK--VFT--  143 (327)
Q Consensus        71 ~~sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~--~~~~~~~~--~~~--  143 (327)
                      +++.+.||+|.+||..+++.. .+..| ..+..++|+|||+++++++.|++|++||+.+++..  .++.....  -..  
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            478899999999999998764 45555 35899999999999999999999999999887643  33332211  122  


Q ss_pred             --EecCCCeE-EEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccccee
Q psy11885        144 --MSLCGEKF-VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY  220 (327)
Q Consensus       144 --~~~~~~~~-~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  220 (327)
                        ++++|+.+ ++++.+++|++||..+++.+.......           ..                 ..      ....
T Consensus       114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~-----------~~-----------------~~------~~~~  159 (432)
T d1qksa2         114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG-----------MT-----------------YD------EQEY  159 (432)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE-----------EC-----------------TT------TCCE
T ss_pred             cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCC-----------cc-----------------cc------ceec
Confidence              23468875 678889999999998765321100000           00                 00      0000


Q ss_pred             eeeeeeeccCCeeeEEEeeEEEEecCCCeE-EEecCCCeEEEEeCCCceeeeecC-cCCcceEEEEECCCCCEEEEEEcc
Q psy11885        221 AFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSLCFSYDGNVLAIACSY  298 (327)
Q Consensus       221 ~~~~h~~~~~~~~~~~~v~~v~~spd~~~l-asgs~dg~i~iWd~~~~~~~~~~~-~~~~~v~~l~fspdg~~la~~~~~  298 (327)
                      .            .......+.++|++..+ ++.+.++.|.+||..+++...... .+......++|+|||+++++++.+
T Consensus       160 ~------------~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~  227 (432)
T d1qksa2         160 H------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA  227 (432)
T ss_dssp             E------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG
T ss_pred             c------------CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccc
Confidence            0            00124467899999876 466778999999988766443221 234467899999999999999865


Q ss_pred             ccc
Q psy11885        299 NYE  301 (327)
Q Consensus       299 ~~~  301 (327)
                      ...
T Consensus       228 ~~~  230 (432)
T d1qksa2         228 RNK  230 (432)
T ss_dssp             GTE
T ss_pred             cce
Confidence            443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.70  E-value=5.7e-14  Score=121.96  Aligned_cols=281  Identities=10%  Similarity=-0.022  Sum_probs=161.2

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEE----ECCCcEEEEECCCCeEEEEec-CCCceeeEEEe-CCceEEEEe----------
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLAS----SWDCNVSLYDITNNNLRLKYA-HSDPVLDCCFQ-DAVHSFSGG----------   75 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~-h~~~v~~~~~~-~~~~~~sgs----------   75 (327)
                      ..+++.+..++++|++.+.+++.    +.++.|.+||..++++..... +..  ..++|+ ++.++++++          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccc
Confidence            34667899999999765444431    234679999999998654442 322  367784 888887654          


Q ss_pred             cCCcEEEEEcCCCcee-eeecCCcc-------EEEEEEeCCCCEEEEEE--CCCeEEEEeCCCCceeeeeeCCCcEEEEe
Q psy11885         76 LDCTLKMFDFNTQTET-VIGTHDQP-------IRAVEYSDEVNCILTGS--WDTSVKMWDPRSSRCVGNYTQPDKVFTMS  145 (327)
Q Consensus        76 ~Dg~i~vwd~~~~~~~-~~~~h~~~-------V~~l~~~~~~~~l~sgs--~d~~i~lwdl~~~~~~~~~~~~~~~~~~~  145 (327)
                      .++.|++||..+++.. .+..+...       ...+.|+++++.++...  .++.+.+|+....+.......+ ....++
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s  173 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP-TCYHIH  173 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccc-eeEEEe
Confidence            4678999999987653 23333222       24578889988776554  4578899998887765554443 234566


Q ss_pred             cCCCe-EEEEeCCCeEEEEECCCCccceeeecccc--eeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceee
Q psy11885        146 LCGEK-FVVGTAGRKVCIWDLRNMGYIMQRRESSL--KFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYA  221 (327)
Q Consensus       146 ~~~~~-~~~~~~d~~v~iwD~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~  221 (327)
                      ++++. +++.+.|+++.+||....+..........  ..........+... .++..+.++...++...........  .
T Consensus       174 ~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~  251 (373)
T d2madh_         174 PGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA--P  251 (373)
T ss_pred             cCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEE--e
Confidence            77665 56788999999999987654322111100  00011111122222 2333344444444332222110000  0


Q ss_pred             eeeeeeccCCee-eEEEeeEEEEecCCCe----------EEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCC
Q psy11885        222 FKCHRIKEDGIE-KIYPVNAISFHQEYNT----------FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGN  290 (327)
Q Consensus       222 ~~~h~~~~~~~~-~~~~v~~v~~spd~~~----------lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~  290 (327)
                      ...+........ .......++++|++..          +++...++.+.+||..+++.+..+. +...+..++|||||+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~  330 (373)
T d2madh_         252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGG  330 (373)
T ss_pred             eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCC
Confidence            000000000000 0001233555665544          4556677889999999998888775 455689999999999


Q ss_pred             EE--EEEEcc
Q psy11885        291 VL--AIACSY  298 (327)
Q Consensus       291 ~l--a~~~~~  298 (327)
                      .+  ++++.+
T Consensus       331 ~~l~vt~~~d  340 (373)
T d2madh_         331 PDLYALSAGT  340 (373)
T ss_pred             EEEEEEeCCC
Confidence            53  445443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=1.2e-14  Score=125.21  Aligned_cols=276  Identities=13%  Similarity=0.041  Sum_probs=157.6

Q ss_pred             eeEEEEecCCCcEEEEE----ECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEE----------ecCCcEE
Q psy11885         18 ITAVKFAPNSNQFLLAS----SWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSG----------GLDCTLK   81 (327)
Q Consensus        18 I~~i~fs~~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sg----------s~Dg~i~   81 (327)
                      ++..+.+|++.+.+++.    ..++.|.+||..++++.... .+.  ...++|+ ++.+++..          +.|+.|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            34445678654443332    34667999999999865443 233  3367885 77777643          4578999


Q ss_pred             EEEcCCCcee-eeecC-------CccEEEEEEeCCCCEEEEEE--CCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeE
Q psy11885         82 MFDFNTQTET-VIGTH-------DQPIRAVEYSDEVNCILTGS--WDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKF  151 (327)
Q Consensus        82 vwd~~~~~~~-~~~~h-------~~~V~~l~~~~~~~~l~sgs--~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~  151 (327)
                      +||..+++.. .+..+       ......++|+++++.++.++  .+..+.+||..+++.+..+..+.............
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF  161 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcce
Confidence            9999987653 22211       12235688999999888775  46789999999999888776654433333333444


Q ss_pred             EEEeCCCeEEEEECCCCccceeeec----ccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee
Q psy11885        152 VVGTAGRKVCIWDLRNMGYIMQRRE----SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI  227 (327)
Q Consensus       152 ~~~~~d~~v~iwD~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~  227 (327)
                      +..+.|+...++.............    ...........+.+.+..++.++.++...++....+......  ....+..
T Consensus       162 ~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~  239 (355)
T d2bbkh_         162 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP--AVEALTE  239 (355)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECC--CEESSCH
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEe--ccCCccc
Confidence            4455555555544433221111000    000011122334445555666666666666544433211000  0010100


Q ss_pred             c--cCCeeeEEEeeEEEEecCCCeEEEecCC----------CeEEEEeCCCceeeeecCcCCcceEEEEECCCCCE-EEE
Q psy11885        228 K--EDGIEKIYPVNAISFHQEYNTFATGGSD----------GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNV-LAI  294 (327)
Q Consensus       228 ~--~~~~~~~~~v~~v~~spd~~~lasgs~d----------g~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~-la~  294 (327)
                      .  ..... ......++++|++..++..+.+          ..|.+||..+++.+..+.. ...+.+++|||||+. |++
T Consensus       240 ~~~~~~~~-p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v  317 (355)
T d2bbkh_         240 AERADGWR-PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYA  317 (355)
T ss_dssp             HHHHTTEE-ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEE
T ss_pred             ceEeeeee-ccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEE
Confidence            0  00000 0123458899999988765433          4799999999988877753 345789999999984 444


Q ss_pred             EEccc
Q psy11885        295 ACSYN  299 (327)
Q Consensus       295 ~~~~~  299 (327)
                      ++..+
T Consensus       318 ~~~~d  322 (355)
T d2bbkh_         318 LSTGD  322 (355)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            44433

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=2.1e-14  Score=122.76  Aligned_cols=247  Identities=9%  Similarity=0.016  Sum_probs=146.5

Q ss_pred             CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC-------CceeeEEEe-CCceEEEEe--------
Q psy11885         12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS-------DPVLDCCFQ-DAVHSFSGG--------   75 (327)
Q Consensus        12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~-------~~v~~~~~~-~~~~~~sgs--------   75 (327)
                      .++...+.+++|+|++..++++++.++.|++||+.+++........       ..+..++|+ ++.+++.++        
T Consensus        36 ~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~  115 (346)
T d1jmxb_          36 MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND  115 (346)
T ss_dssp             CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSS
T ss_pred             cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceee
Confidence            4456678999999975444566668899999999999865433211       234567775 677776554        


Q ss_pred             ----cCCcEEEEEcCCCcee-eee--cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE--EEEec
Q psy11885         76 ----LDCTLKMFDFNTQTET-VIG--THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSL  146 (327)
Q Consensus        76 ----~Dg~i~vwd~~~~~~~-~~~--~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~  146 (327)
                          .++.+.+|+..++... .+.  .....+..+.+++++..+++   +..+.+||+.+++.+..+......  ..+++
T Consensus       116 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (346)
T d1jmxb_         116 HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAP  192 (346)
T ss_dssp             CEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCC
T ss_pred             eeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCCccceEEec
Confidence                4678899988765432 222  12234556667777765554   356889999888877665432110  01111


Q ss_pred             CC--------------------------CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee
Q psy11885        147 CG--------------------------EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI  200 (327)
Q Consensus       147 ~~--------------------------~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (327)
                      .+                          ..+.++..+..+.+||+.+........... ........+++++..++. ..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~  270 (346)
T d1jmxb_         193 DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL-TELYFTGLRSPKDPNQIY-GV  270 (346)
T ss_dssp             BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECSSCTTEEE-EE
T ss_pred             cccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecc-cceeEEEEEeCCCCEEEE-ec
Confidence            11                          112233445568888887665332211111 111223344555544443 33


Q ss_pred             cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCC
Q psy11885        201 EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD  277 (327)
Q Consensus       201 ~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~  277 (327)
                      .+.+.++....+...    ..+. +.         ..+.+++|+|||++|++|+.|+.|++||..+++.+.++..+.
T Consensus       271 ~~~v~v~d~~~~~~~----~~~~-~~---------~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         271 LNRLAKYDLKQRKLI----KAAN-LD---------HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             ESEEEEEETTTTEEE----EEEE-CS---------SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             CCeEEEEECCCCcEE----EEEc-CC---------CCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence            445555433332211    1111 00         146789999999999999999999999999999988776433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.9e-13  Score=116.36  Aligned_cols=245  Identities=8%  Similarity=0.067  Sum_probs=145.8

Q ss_pred             CCCCCeeEEEEecCCCcEEEE-EECCCcEEEEECCCCe--E--EEEecCCCceeeEEEe-CCceEEEEec-CCcEEEEEc
Q psy11885         13 PPEDGITAVKFAPNSNQFLLA-SSWDCNVSLYDITNNN--L--RLKYAHSDPVLDCCFQ-DAVHSFSGGL-DCTLKMFDF   85 (327)
Q Consensus        13 ~~~~~I~~i~fs~~~~~~l~s-~~~d~~i~iwd~~~~~--~--~~~~~h~~~v~~~~~~-~~~~~~sgs~-Dg~i~vwd~   85 (327)
                      .+.+.|+.|+|+|++ ++|++ +..|+.|++|++....  +  .....+...+..++|+ ++.++++++. +++|++|+.
T Consensus        34 ~~~~~v~~la~spDG-~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             ECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCCEeEEEEeCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            355789999999964 66654 4558999999987643  2  2223345556778885 7888888775 678999988


Q ss_pred             CCCcee---eeecCCccEEEEEEeCCCCEEEEEEC-CCeEEEEeCCCCceeee-----ee--CCC--cEEEEecCCCeEE
Q psy11885         86 NTQTET---VIGTHDQPIRAVEYSDEVNCILTGSW-DTSVKMWDPRSSRCVGN-----YT--QPD--KVFTMSLCGEKFV  152 (327)
Q Consensus        86 ~~~~~~---~~~~h~~~V~~l~~~~~~~~l~sgs~-d~~i~lwdl~~~~~~~~-----~~--~~~--~~~~~~~~~~~~~  152 (327)
                      ......   ....+...+.++.++++++.++.++. +..|++|+.........     ..  ...  ..+.+...+..++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~  192 (333)
T d1ri6a_         113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  192 (333)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             ccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence            766432   23345667888999999999888765 56799999876532211     11  111  2345556666654


Q ss_pred             EE-eCCCeEEEEECCCCccceeee------cc--cceeeeEEeEEeeCCCceEEE-eecCeEEEEEccCCcccccceeee
Q psy11885        153 VG-TAGRKVCIWDLRNMGYIMQRR------ES--SLKFQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAF  222 (327)
Q Consensus       153 ~~-~~d~~v~iwD~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~  222 (327)
                      .. ...+...+|+...........      ..  .........++.++++.++.. ...+...++..+.........   
T Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  269 (333)
T d1ri6a_         193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE---  269 (333)
T ss_dssp             EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE---
T ss_pred             eeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE---
Confidence            44 456678888765432111000      00  001112334556666544443 334555555554432221111   


Q ss_pred             eeeeeccCCeeeEEEeeEEEEecCCCeEEEe-cCCCeEEEE--eCCCce
Q psy11885        223 KCHRIKEDGIEKIYPVNAISFHQEYNTFATG-GSDGYVNIW--DGFNKK  268 (327)
Q Consensus       223 ~~h~~~~~~~~~~~~v~~v~~spd~~~lasg-s~dg~i~iW--d~~~~~  268 (327)
                       .+....      ..+..++|+|||++|+++ +.+++|++|  |..+|+
T Consensus       270 -~~~~~~------~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         270 -GFQPTE------TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             -EEEECS------SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             -EEeCCC------CCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCc
Confidence             111000      124579999999987765 456899999  455664

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=3.9e-13  Score=116.52  Aligned_cols=253  Identities=9%  Similarity=-0.040  Sum_probs=147.4

Q ss_pred             eeEEEEecCCCcEEEEEE----------CCCcEEEEECCCCeEEEEe-cCCCce-------eeEEE-eCCceEEEE--ec
Q psy11885         18 ITAVKFAPNSNQFLLASS----------WDCNVSLYDITNNNLRLKY-AHSDPV-------LDCCF-QDAVHSFSG--GL   76 (327)
Q Consensus        18 I~~i~fs~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~-~h~~~v-------~~~~~-~~~~~~~sg--s~   76 (327)
                      ...++|+|++ ++|++++          .++.|++||..+++..... .+....       ..+.| +++..++..  ..
T Consensus        68 ~~~~a~SpDG-~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          68 LPNPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             CccEEEcCCC-CEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence            3479999965 6666654          4578999999999865443 233222       23445 355544433  34


Q ss_pred             CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEE-EEEECCCeEEEEeCCCCceeeeeeCC-------CcEEEEecCC
Q psy11885         77 DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCI-LTGSWDTSVKMWDPRSSRCVGNYTQP-------DKVFTMSLCG  148 (327)
Q Consensus        77 Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~sgs~d~~i~lwdl~~~~~~~~~~~~-------~~~~~~~~~~  148 (327)
                      ++.+.+|+....+..   .+.....++.++++++.+ ++.+.|+++.+||...++........       .......+.+
T Consensus       147 ~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (373)
T d2madh_         147 GPAVGLVVQGGSSDD---QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             CCceEEeeccCCeEE---EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC
Confidence            567777877654322   222345678899998755 67889999999999888766543321       1112222333


Q ss_pred             -CeEEEEeCCCeEEEEECCCCccceeeecccc----------eeeeEEeEEeeCCCceEEEe----------ecCeEEEE
Q psy11885        149 -EKFVVGTAGRKVCIWDLRNMGYIMQRRESSL----------KFQTRCIKCFPNKQGYVLSS----------IEGRAAVE  207 (327)
Q Consensus       149 -~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~  207 (327)
                       ..++..+.++.+.+|+..+............          +.....+.+.+++..++...          ..+.+.+ 
T Consensus       224 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~-  302 (373)
T d2madh_         224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS-  302 (373)
T ss_pred             CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE-
Confidence             3456667888999999876542211110000          00111223333333322222          2222222 


Q ss_pred             EccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe--EEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEE
Q psy11885        208 YLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT--FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF  285 (327)
Q Consensus       208 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~--lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f  285 (327)
                       ++.....  ....+          .+...+.+++|+|||+.  +++++.|++|++||+.+++.+..+..+....+.|++
T Consensus       303 -~d~~t~~--~~~~~----------~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         303 -VTGLVGQ--TSSQI----------SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             -EECCCCc--EEEEe----------cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEE
Confidence             3322111  00000          01124678999999984  478999999999999999999999877666677887


Q ss_pred             CCC
Q psy11885        286 SYD  288 (327)
Q Consensus       286 spd  288 (327)
                      .++
T Consensus       370 ~~~  372 (373)
T d2madh_         370 MNE  372 (373)
T ss_pred             ecC
Confidence            654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=6e-13  Score=114.37  Aligned_cols=258  Identities=11%  Similarity=-0.009  Sum_probs=146.5

Q ss_pred             CeeEEEEecCCCcEEEEE----------ECCCcEEEEECCCCeEEEEe-cCC-------CceeeEEEe-CCceEEEE--e
Q psy11885         17 GITAVKFAPNSNQFLLAS----------SWDCNVSLYDITNNNLRLKY-AHS-------DPVLDCCFQ-DAVHSFSG--G   75 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~----------~~d~~i~iwd~~~~~~~~~~-~h~-------~~v~~~~~~-~~~~~~sg--s   75 (327)
                      .+..++|||++ ++|++.          +.|+.|++||..+++..... .+.       .....++|+ ++.+++.+  +
T Consensus        48 ~~~~~a~SpDg-~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~  126 (355)
T d2bbkh_          48 FLPNPVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS  126 (355)
T ss_dssp             SSCEEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred             CCCceEEcCCC-CEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC
Confidence            44578999976 455443          34789999999998854432 121       123456775 67766655  4


Q ss_pred             cCCcEEEEEcCCCcee-eeecCCc-------cEEEEEEeCCCCEEEEE-ECCCeEEEEeCCCCceeeeeeCCCcEEEEec
Q psy11885         76 LDCTLKMFDFNTQTET-VIGTHDQ-------PIRAVEYSDEVNCILTG-SWDTSVKMWDPRSSRCVGNYTQPDKVFTMSL  146 (327)
Q Consensus        76 ~Dg~i~vwd~~~~~~~-~~~~h~~-------~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~  146 (327)
                      .+..+.+|+..++... .+..+..       ....+.+++++..++.. ..++.+.+++....+......  .....+..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  204 (355)
T d2bbkh_         127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL--INHPAYSQ  204 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCB--CSCCEEET
T ss_pred             CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecce--eeeccccC
Confidence            5678999999887643 2222221       22334556666555443 233444555544332211111  11123455


Q ss_pred             CCCeEEEEeCCCeEEEEECCCCccceeeecc-c------c---eeeeEEeEEeeCCCceEEEeecC--------eEEEEE
Q psy11885        147 CGEKFVVGTAGRKVCIWDLRNMGYIMQRRES-S------L---KFQTRCIKCFPNKQGYVLSSIEG--------RAAVEY  208 (327)
Q Consensus       147 ~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~-~------~---~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~  208 (327)
                      .+..++.++.++.+.+||+...+........ .      .   +.....+.+.+++..++....++        ...+..
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v  284 (355)
T d2bbkh_         205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  284 (355)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence            5677888899999999999876432111000 0      0   00112345556655554443322        233444


Q ss_pred             ccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC--eEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEEC
Q psy11885        209 LDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN--TFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS  286 (327)
Q Consensus       209 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~--~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fs  286 (327)
                      |+.....  ....+.          .-..+.+++|+|||+  .+++++.|++|++||..+++.+.++..+...-..+.+.
T Consensus       285 ~d~~t~~--~~~~~~----------~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~  352 (355)
T d2bbkh_         285 LDAKTGE--RLAKFE----------MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA  352 (355)
T ss_dssp             EETTTCC--EEEEEE----------EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECC
T ss_pred             EeCCCCc--EEEEec----------CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeC
Confidence            5433211  111111          112477899999998  35678889999999999999999887654444566666


Q ss_pred             CCC
Q psy11885        287 YDG  289 (327)
Q Consensus       287 pdg  289 (327)
                      ++|
T Consensus       353 d~~  355 (355)
T d2bbkh_         353 DMG  355 (355)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.48  E-value=2.1e-12  Score=112.14  Aligned_cols=272  Identities=7%  Similarity=-0.078  Sum_probs=152.6

Q ss_pred             CCCCeeEEEEecCCCcEEEE--EECCCc--EEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEE----------ecC
Q psy11885         14 PEDGITAVKFAPNSNQFLLA--SSWDCN--VSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSG----------GLD   77 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s--~~~d~~--i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sg----------s~D   77 (327)
                      ..+....++..+++....++  ...+++  +.+||..++++.... .+..+  .++|+ ++..++..          +.|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            33455556667755443222  344454  667799999865443 33333  46774 67777653          457


Q ss_pred             CcEEEEEcCCCcee-eeecCC-------ccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCCCceeeeeeCCCcEEEEecCC
Q psy11885         78 CTLKMFDFNTQTET-VIGTHD-------QPIRAVEYSDEVNCILTGS-WDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCG  148 (327)
Q Consensus        78 g~i~vwd~~~~~~~-~~~~h~-------~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~  148 (327)
                      ++|++||..+.+.. .+..+.       .....++|+|||++++.+. .++.+.+||+.+++.+..+..+..........
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~  175 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAA  175 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEET
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCC
Confidence            88999999887653 222211       1224689999999998876 57999999999999888776654322222234


Q ss_pred             CeEEEEeCCCeEEEEECCCCccceeeecc----cceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee
Q psy11885        149 EKFVVGTAGRKVCIWDLRNMGYIMQRRES----SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC  224 (327)
Q Consensus       149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  224 (327)
                      ..++..+.|+++.+|++............    ........  ......+.++....+...+..+...............
T Consensus       176 ~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  253 (368)
T d1mdah_         176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA--AQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNE  253 (368)
T ss_dssp             TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC--EEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSC
T ss_pred             ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceee--cccccCcEEEEecCCCEEEEeecCCceEEEeeccccc
Confidence            45667778888888887654321111000    00000011  1122233444444444444333322211100000000


Q ss_pred             eeeccCCeeeEEEeeEEEEecCCCeEEEecC---------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCE
Q psy11885        225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGS---------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNV  291 (327)
Q Consensus       225 h~~~~~~~~~~~~v~~v~~spd~~~lasgs~---------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~  291 (327)
                      ........ .......++++|++..+++...         ...|.+||..+++.+..+.. ...+.+++|||||+.
T Consensus       254 ~~~~~~~~-~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~  327 (368)
T d1mdah_         254 SGRKADNF-RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGAS  327 (368)
T ss_dssp             THHHHTTE-EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSC
T ss_pred             ceeeeeee-cCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCE
Confidence            00000000 0011245789999888765422         24699999999988877753 356889999999984

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.35  E-value=2.1e-10  Score=99.12  Aligned_cols=250  Identities=10%  Similarity=-0.016  Sum_probs=133.2

Q ss_pred             eEEEEecCCCcEEEEEE----------CCCcEEEEECCCCeEEEEec-CC-------CceeeEEEe-CCceEEEEe-cCC
Q psy11885         19 TAVKFAPNSNQFLLASS----------WDCNVSLYDITNNNLRLKYA-HS-------DPVLDCCFQ-DAVHSFSGG-LDC   78 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~-h~-------~~v~~~~~~-~~~~~~sgs-~Dg   78 (327)
                      ..++|+|++ ++|++.+          .|+.|++||..+++...... +.       .....++|+ ++.+++.+. .++
T Consensus        68 ~~~a~spDg-~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          68 SLAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             CEEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             CcceECCCC-CEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCC
Confidence            468999964 6666543          47789999999988543321 21       123357885 788888665 579


Q ss_pred             cEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee------CC-CcEEEEecCCCe
Q psy11885         79 TLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT------QP-DKVFTMSLCGEK  150 (327)
Q Consensus        79 ~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~------~~-~~~~~~~~~~~~  150 (327)
                      .+.+||+.+++.. .+..+....   .+......++..+.|+++..|++..........      .. .......+..+.
T Consensus       147 ~v~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  223 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKSASCFH---IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG  223 (368)
T ss_dssp             CEEEEEETTTEEEEEEECSSCCC---CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             eEEEEECCCCcEeEEeeccCcce---EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc
Confidence            9999999987653 233332221   111223456666777887777776543221110      00 011111222222


Q ss_pred             EEEEeCCCeEEEEECCCCccceeeecc---------c-ceeeeEEeEEeeCCCceEEEeecC-------eEEEEEccCCc
Q psy11885        151 FVVGTAGRKVCIWDLRNMGYIMQRRES---------S-LKFQTRCIKCFPNKQGYVLSSIEG-------RAAVEYLDTGP  213 (327)
Q Consensus       151 ~~~~~~d~~v~iwD~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~  213 (327)
                      .+....++.+.++|+............         . .+.....++++++...+.+...++       ...++.+|...
T Consensus       224 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t  303 (368)
T d1mdah_         224 MLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV  303 (368)
T ss_dssp             EEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred             EEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC
Confidence            233334455555555433211100000         0 000112345555555444432221       23344454332


Q ss_pred             ccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe--EEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEE
Q psy11885        214 EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT--FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF  285 (327)
Q Consensus       214 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~--lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f  285 (327)
                      ..  ....          +..-..+.+++|+|||+.  +++++.|++|++||..+++.+..+.....| ..|++
T Consensus       304 ~~--~~~~----------~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P-~~l~~  364 (368)
T d1mdah_         304 GQ--TSGP----------ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSV  364 (368)
T ss_dssp             CC--EEEC----------CEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC-CEEEC
T ss_pred             Cc--EeEE----------ecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCC-CEEEE
Confidence            11  1100          111235788999999973  568888999999999999999888754433 45554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.33  E-value=3.5e-11  Score=107.70  Aligned_cols=109  Identities=11%  Similarity=0.075  Sum_probs=80.6

Q ss_pred             CCCCeeEEEEecCCCcEEEEEE---------CCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEE
Q psy11885         14 PEDGITAVKFAPNSNQFLLASS---------WDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMF   83 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vw   83 (327)
                      +...|.+++||||+ ++|+.++         .++.+.|||+.++++.....|.+.+....|+ ++..++.. .++.+.+|
T Consensus        60 ~~~~i~~~~~SpDg-~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~  137 (470)
T d2bgra1          60 FGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVK  137 (470)
T ss_dssp             SSSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEE
T ss_pred             ccCccceeEECCCC-CEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEe-ecccceEE
Confidence            34679999999964 6777664         3567899999999987777788889999995 78888875 48899999


Q ss_pred             EcCCCceeeeec-------------------CCccEEEEEEeCCCCEEEEEECCCe-EEEE
Q psy11885         84 DFNTQTETVIGT-------------------HDQPIRAVEYSDEVNCILTGSWDTS-VKMW  124 (327)
Q Consensus        84 d~~~~~~~~~~~-------------------h~~~V~~l~~~~~~~~l~sgs~d~~-i~lw  124 (327)
                      +..++....+..                   +.+....+.|+|||+.|+....|.+ ++.|
T Consensus       138 ~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             ECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence            988775432211                   1123456789999999998876543 4433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.28  E-value=1.3e-08  Score=85.32  Aligned_cols=250  Identities=10%  Similarity=0.034  Sum_probs=159.7

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce--eee
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE--TVI   93 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~--~~~   93 (327)
                      -+..++++|+ +.++++...+++|..|+... +..........+.+++|. ++..+++...++.+..|+......  ..+
T Consensus        29 ~~e~iAv~pd-G~l~vt~~~~~~I~~i~p~g-~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPD-GTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTT-SCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCC-CCEEEEeCCCCEEEEEeCCC-CEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            4778999996 46888888899999998654 444445566778899995 777777777788888888765432  222


Q ss_pred             e--cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-----------CCcEEEEecCCCeEE-EEeCCCe
Q psy11885         94 G--THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-----------PDKVFTMSLCGEKFV-VGTAGRK  159 (327)
Q Consensus        94 ~--~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~d~~  159 (327)
                      .  ......+.+++.++++.+++.+.++.+..+|..++........           ......+.+.++.++ +.+..+.
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~  186 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML  186 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCe
Confidence            2  2345678999999999888888899999999887643211111           011222333344333 3344555


Q ss_pred             EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      |..+|+.......                                             ....+. ..         ....
T Consensus       187 i~~~~~~~~~~~~---------------------------------------------~~~~~~-~~---------~~pd  211 (302)
T d2p4oa1         187 LLRIPVDSTDKPG---------------------------------------------EPEIFV-EQ---------TNID  211 (302)
T ss_dssp             EEEEEBCTTSCBC---------------------------------------------CCEEEE-ES---------CCCS
T ss_pred             EEecccccccccc---------------------------------------------cccccc-CC---------CCCc
Confidence            5555544321000                                             000000 00         0134


Q ss_pred             EEEEecCCCeEEEecCCCeEEEEeCCCce-eeeecCcCCcceEEEEE---CCCCCEEEEEEccccccCCCCCCCCCCcEE
Q psy11885        240 AISFHQEYNTFATGGSDGYVNIWDGFNKK-RLCQFHRYDTGITSLCF---SYDGNVLAIACSYNYELETPPDPIPPNNIF  315 (327)
Q Consensus       240 ~v~~spd~~~lasgs~dg~i~iWd~~~~~-~~~~~~~~~~~v~~l~f---spdg~~la~~~~~~~~~~~~~~~~~~~~~~  315 (327)
                      .++|.++|.++++...++.|..++..... .+......-...++++|   +||++.|.+++.....+..+ ..+.+.+|+
T Consensus       212 gia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g~~~~~~-~~~~~~~~~  290 (302)
T d2p4oa1         212 DFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGGMFLPPP-TGVVPANVV  290 (302)
T ss_dssp             SEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTTSSSCCT-TCCCCEEEE
T ss_pred             ceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCCccCCCc-CCcCCCeEE
Confidence            68999999988888888999999764322 23333333345789999   78999998887766555554 446778999


Q ss_pred             EEEcccccc
Q psy11885        316 IRHVTDQET  324 (327)
Q Consensus       316 ~~~~~~~~~  324 (327)
                      -+.|-..|.
T Consensus       291 ~~~~~~~g~  299 (302)
T d2p4oa1         291 RLEVGKPGY  299 (302)
T ss_dssp             EEECSSCBC
T ss_pred             EEeCCCCCc
Confidence            888766553

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.25  E-value=2e-10  Score=100.64  Aligned_cols=285  Identities=9%  Similarity=0.069  Sum_probs=154.0

Q ss_pred             CeeEEEEecCCCcEEEEE-ECCCcEEEEECCCCeEEEE--ecCCCceeeEEEe-CCceE--EEEecCCcE----------
Q psy11885         17 GITAVKFAPNSNQFLLAS-SWDCNVSLYDITNNNLRLK--YAHSDPVLDCCFQ-DAVHS--FSGGLDCTL----------   80 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~--~~h~~~v~~~~~~-~~~~~--~sgs~Dg~i----------   80 (327)
                      ......++|| +++|++. ..++.|.++|+.+++....  ..+...+..++|+ +++++  +..+ +..+          
T Consensus        73 ~~s~t~gtpD-Gr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~-~~~v~~~~dg~~~~  150 (441)
T d1qnia2          73 HISMTDGRYD-GKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNA-EFVIPQPNDGTDFS  150 (441)
T ss_dssp             EEEEETTEEE-EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEE-CSCEESSCSSSCCC
T ss_pred             CcceecccCC-CCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEecc-CCcccccCcccccc
Confidence            4455556786 4666555 4678999999999986443  3456678889996 66643  3333 3333          


Q ss_pred             --------EEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCC-eEEEEeCCCCceeeeeeCCC--cEEEEecCCC
Q psy11885         81 --------KMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDT-SVKMWDPRSSRCVGNYTQPD--KVFTMSLCGE  149 (327)
Q Consensus        81 --------~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~-~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~  149 (327)
                              ..+|..+......-........++++|+|+++++++.+. .+..++..+.+....+....  ....+.++|+
T Consensus       151 ~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk  230 (441)
T d1qnia2         151 LDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGN  230 (441)
T ss_dssp             GGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTC
T ss_pred             cccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCC
Confidence                    446666554322111223467889999999998887653 33333333322221111000  0011222344


Q ss_pred             eEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEE-EeecCeEEEEEccCCccc--c--cceeeeee
Q psy11885        150 KFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVL-SSIEGRAAVEYLDTGPEM--Q--KMKYAFKC  224 (327)
Q Consensus       150 ~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~--~--~~~~~~~~  224 (327)
                      .+.+ +.++.+.+++....+.+........   +..+.++|+++.+++ +..++.+.++.++.-...  .  .....+..
T Consensus       231 ~~~v-~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         231 FKTI-GDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             CBCC-TTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             EEEe-CCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence            3322 3345555555554443333332221   234556666665433 344555555444321100  0  00000111


Q ss_pred             eeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCc----------eeeeec-----CcCCcceEEEEECCCC
Q psy11885        225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK----------KRLCQF-----HRYDTGITSLCFSYDG  289 (327)
Q Consensus       225 h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~----------~~~~~~-----~~~~~~v~~l~fspdg  289 (327)
                      +  .+.+++    ....+|.++|..+.+.+.|..|..|++...          ..+.++     .+|...+.+.+|+|||
T Consensus       307 ~--~~~glg----plh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdG  380 (441)
T d1qnia2         307 E--PELGLG----PLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADG  380 (441)
T ss_dssp             C--CBCCSC----EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCC
T ss_pred             e--cccccC----cccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCC
Confidence            0  111111    234589999999999999999999996411          112222     3565567778999999


Q ss_pred             CEEEEEEccccccCCCCCCCCCCc
Q psy11885        290 NVLAIACSYNYELETPPDPIPPNN  313 (327)
Q Consensus       290 ~~la~~~~~~~~~~~~~~~~~~~~  313 (327)
                      ++|++++.+..-+.-|--++++.+
T Consensus       381 k~l~s~~k~s~dr~~~~g~~~~~~  404 (441)
T d1qnia2         381 KWLVVLSKFSKDRFLPVGPLHPEN  404 (441)
T ss_dssp             CEEEEEESCCGGGSCCCSSSCCEE
T ss_pred             cEEEecCccccccCcCCCCCCCcc
Confidence            999999887666666544444443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.10  E-value=1.9e-08  Score=89.58  Aligned_cols=141  Identities=9%  Similarity=0.093  Sum_probs=103.7

Q ss_pred             eEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec------CCCceeeEEEe-CCceEEEEe---------cCCcEEE
Q psy11885         19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA------HSDPVLDCCFQ-DAVHSFSGG---------LDCTLKM   82 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------h~~~v~~~~~~-~~~~~~sgs---------~Dg~i~v   82 (327)
                      ..+.|.++ ++++..  .|+.+.+||+.+++...+..      |...|.+..|+ ++.+++.++         .++.+.+
T Consensus        20 ~~~~W~~d-~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          20 YSLRWISD-HEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCCEECSS-SEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             cCCEeCCC-CEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence            35789985 566653  57899999999988544332      44678899995 788888764         3567889


Q ss_pred             EEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC---------------------CCcE
Q psy11885         83 FDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ---------------------PDKV  141 (327)
Q Consensus        83 wd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~---------------------~~~~  141 (327)
                      ||+.++....+..|...+..+.|||||+.++.. .++.+.+|++.+++..+....                     ....
T Consensus        97 ~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          97 YDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             EETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             EECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            999998877777888889999999999999985 467899999988875543221                     1123


Q ss_pred             EEEecCCCeEEEEeCCCe-EEEE
Q psy11885        142 FTMSLCGEKFVVGTAGRK-VCIW  163 (327)
Q Consensus       142 ~~~~~~~~~~~~~~~d~~-v~iw  163 (327)
                      +.++++|+.++....|.+ |+.|
T Consensus       176 ~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             EEECTTSSEEEEEEEECTTCCEE
T ss_pred             cEECCCCCccceeEecCCcCceE
Confidence            558889999888765432 4443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.95  E-value=1.9e-06  Score=72.27  Aligned_cols=76  Identities=8%  Similarity=0.093  Sum_probs=56.3

Q ss_pred             eeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEE
Q psy11885        238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIR  317 (327)
Q Consensus       238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~  317 (327)
                      ...+++.++|+.+++....+.|.+||...++.+..+.......++++|.||++.|..+...            .++||-+
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~------------~g~i~~~  295 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE------------NNAVWKF  295 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT------------TTEEEEE
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC------------CCcEEEE
Confidence            3568999999988887778999999987776666555444567899999999866665432            3566666


Q ss_pred             Eccccccc
Q psy11885        318 HVTDQETK  325 (327)
Q Consensus       318 ~~~~~~~~  325 (327)
                      -+...|++
T Consensus       296 ~~~~~G~~  303 (314)
T d1pjxa_         296 EWQRNGKK  303 (314)
T ss_dssp             ECSSCBCC
T ss_pred             ECCCCChh
Confidence            66666654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.77  E-value=3.4e-06  Score=68.51  Aligned_cols=220  Identities=8%  Similarity=-0.017  Sum_probs=121.5

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE-ecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeee
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK-YAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIG   94 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~   94 (327)
                      +-..|++++++.-+++..+..+.+..++..+...... ..-......+++. ++...++....+.+++++-.+.......
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~   94 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF   94 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence            4578999997543444455667777776655443222 2211234567774 5554445554555555543333322222


Q ss_pred             cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceee-eeeC--CCcEEEEecCCCeEEEEeCCCeEEEEECCCCccc
Q psy11885         95 THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVG-NYTQ--PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus        95 ~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      ........+++.++++.+++-.....+..++........ ....  ....+++.+.++.+++...++.|..+|...... 
T Consensus        95 ~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-  173 (260)
T d1rwia_          95 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-  173 (260)
T ss_dssp             CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-
T ss_pred             eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee-
Confidence            223456889999999887776667778888765533211 1111  112345555666555556666677666543210 


Q ss_pred             eeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE
Q psy11885        172 MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA  251 (327)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la  251 (327)
                                              ..           +.. ..   .                 .....+++.++|.+++
T Consensus       174 ------------------------~~-----------~~~-~~---~-----------------~~p~gi~~d~~g~l~v  197 (260)
T d1rwia_         174 ------------------------VV-----------LPF-TD---I-----------------TAPWGIAVDEAGTVYV  197 (260)
T ss_dssp             ------------------------EE-----------CCC-SS---C-----------------CSEEEEEECTTCCEEE
T ss_pred             ------------------------ee-----------eec-cc---c-----------------CCCccceeeeeeeeee
Confidence                                    00           000 00   0                 0135688999999888


Q ss_pred             EecCCCeEEEEeCCCceeeeecC-cCCcceEEEEECCCCCEEEE
Q psy11885        252 TGGSDGYVNIWDGFNKKRLCQFH-RYDTGITSLCFSYDGNVLAI  294 (327)
Q Consensus       252 sgs~dg~i~iWd~~~~~~~~~~~-~~~~~v~~l~fspdg~~la~  294 (327)
                      +-...+.|..++..... ...+. ..-.....|+++++|.++++
T Consensus       198 sd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         198 TEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             EETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEE
T ss_pred             eecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEE
Confidence            88888888888754432 22221 11123578999999987665

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=2.2e-05  Score=63.41  Aligned_cols=232  Identities=9%  Similarity=0.002  Sum_probs=128.6

Q ss_pred             cEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC-C--cEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEE
Q psy11885         39 NVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD-C--TLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILT  114 (327)
Q Consensus        39 ~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D-g--~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  114 (327)
                      .|.|-|..+........+...+.+-+|+ +|+.++-.... +  .+.+.+........+..+........|+|+|+.++.
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            5777788766655555666778888995 88888754433 3  355556666666666667778889999999998887


Q ss_pred             EEC-CCeEEEEe--CCCCceeeeeeCCCc--EEEEecCCCeEE-EEeCCC--eEEEEECCCCccceeeecccceeeeEEe
Q psy11885        115 GSW-DTSVKMWD--PRSSRCVGNYTQPDK--VFTMSLCGEKFV-VGTAGR--KVCIWDLRNMGYIMQRRESSLKFQTRCI  186 (327)
Q Consensus       115 gs~-d~~i~lwd--l~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~d~--~v~iwD~~~~~~~~~~~~~~~~~~~~~~  186 (327)
                      ... ++...++.  ...............  .......++.++ +...++  .|.+.++........   ..........
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~---~~~~~~~~~~  176 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI---TWEGSQNQDA  176 (269)
T ss_dssp             EECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC---CCSSSEEEEE
T ss_pred             eeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceee---eccccccccc
Confidence            654 33333332  222222222222211  223344444433 334444  455566655432111   1111122334


Q ss_pred             EEeeCCCceEEEeec-CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC---CCeEEEE
Q psy11885        187 KCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS---DGYVNIW  262 (327)
Q Consensus       187 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~---dg~i~iW  262 (327)
                      .++|++..++..+.. +...++..+..........    +    .     .......|||||+.||-.+.   ...++++
T Consensus       177 ~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~----~-----~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~  243 (269)
T d2hqsa1         177 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS----S----T-----FLDETPSLAPNGTMVIYSSSQGMGSVLNLV  243 (269)
T ss_dssp             EECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC----C----S-----SSCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             ccccccceeEEEeecCCceeeeEeecccccceEee----c----C-----ccccceEECCCCCEEEEEEcCCCCcEEEEE
Confidence            566777666655443 3445545544332111100    0    0     01345689999999874332   3468899


Q ss_pred             eCCCceeeeecCcCCcceEEEEECC
Q psy11885        263 DGFNKKRLCQFHRYDTGITSLCFSY  287 (327)
Q Consensus       263 d~~~~~~~~~~~~~~~~v~~l~fsp  287 (327)
                      ++..+. ..++......+...+|||
T Consensus       244 ~~dg~~-~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         244 STDGRF-KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             ETTSCC-EEECCCSSSEEEEEEECC
T ss_pred             ECCCCC-EEEEeCCCCcEEeEEeCC
Confidence            987654 445555556678899999

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=4.9e-06  Score=67.40  Aligned_cols=202  Identities=11%  Similarity=0.087  Sum_probs=104.2

Q ss_pred             cEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCC---eEEEEeCCCCceeeeeeC--CCcEEEEecCCCeEEE
Q psy11885         79 TLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDT---SVKMWDPRSSRCVGNYTQ--PDKVFTMSLCGEKFVV  153 (327)
Q Consensus        79 ~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~---~i~lwdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~  153 (327)
                      .|.+-|.+......+..+...+...+|||||+.|+-...+.   .+.+.+...+........  ......+++++..++.
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            46666777666666655677788999999999998665443   466667666554333322  2334567777887776


Q ss_pred             EeC-CCe--EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEE-eecCeEEEEEccCCcccccceeeeeeeeecc
Q psy11885        154 GTA-GRK--VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE  229 (327)
Q Consensus       154 ~~~-d~~--v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~  229 (327)
                      ... ++.  +..+.......... ....  .........+........ ...+...++..+.........   ...    
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~---~~~----  169 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASGQIRQV-TDGR--SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI---TWE----  169 (269)
T ss_dssp             EECTTSSCEEEEEETTTCCEEEC-CCCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC---CCS----
T ss_pred             eeecCCccceeecccccccceee-eecc--ccccccccccccccceecccccCCceEeeeecccccceee---ecc----
Confidence            543 222  22222222211100 0000  000111222233333322 223333343333222111000   000    


Q ss_pred             CCeeeEEEeeEEEEecCCCeEEEecCC-Ce--EEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        230 DGIEKIYPVNAISFHQEYNTFATGGSD-GY--VNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       230 ~~~~~~~~v~~v~~spd~~~lasgs~d-g~--i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                           ........|+|+++.++..+.+ +.  +.+.+...+..  +............|||||++||..+.
T Consensus       170 -----~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         170 -----GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             -----SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred             -----cccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEc
Confidence                 0124456899999998876554 44  44445444433  22223445677899999999998764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.71  E-value=1.8e-08  Score=88.04  Aligned_cols=239  Identities=10%  Similarity=-0.050  Sum_probs=130.4

Q ss_pred             EEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCC
Q psy11885         31 LLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEV  109 (327)
Q Consensus        31 l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~  109 (327)
                      +++++.+|.|++|++.+++......        +|+ ++.+ ..|..+.+.+++..... ...-..|-.........|||
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~Ip--------Vfspd~~~-g~g~~~es~~vl~~~~~-~~~gd~hhP~~s~t~gtpDG   83 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIP--------VFNVDSAT-GWGITNESKEILGGDQQ-YLNGDCHHPHISMTDGRYDG   83 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEEC--------SSSBCTTT-CTTTSHHHHHHHCSSSC-CSCCCBCCCEEEEETTEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEE--------eEcCCCCE-EEEECCccceEEecccc-cccCcccCCCcceecccCCC
Confidence            5677889999999999999876553        132 2211 11222212122110000 00111233334455567899


Q ss_pred             CEEEEE-ECCCeEEEEeCCCCceeeeeeCCC----cEEEEecCCCeE--EEEeCCC-----------------eEEEEEC
Q psy11885        110 NCILTG-SWDTSVKMWDPRSSRCVGNYTQPD----KVFTMSLCGEKF--VVGTAGR-----------------KVCIWDL  165 (327)
Q Consensus       110 ~~l~sg-s~d~~i~lwdl~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~d~-----------------~v~iwD~  165 (327)
                      ++|+.. ..+++|.++|+++.++.+.+..+.    ....++++|+..  +..+.+.                 .+..+|.
T Consensus        84 r~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~  163 (441)
T d1qnia2          84 KYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA  163 (441)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence            988666 468899999999999887665432    235666777753  2223221                 2345677


Q ss_pred             CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885        166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ  245 (327)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  245 (327)
                      .+++...+....   .....+.+.|+++...+++.+....+. ++..  .....-.+          ........++++|
T Consensus       164 ~t~~v~~qI~v~---~~p~~v~~spdGk~a~vt~~nse~~~~-id~~--t~~~~d~i----------~v~n~p~~~~~~~  227 (441)
T d1qnia2         164 ETMDVAWQVIVD---GNLDNTDADYTGKYATSTCYNSERAVD-LAGT--MRNDRDWV----------VVFNVERIAAAVK  227 (441)
T ss_dssp             TTCSEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSS-HHHH--TCSSBCEE----------EEEEHHHHHHHHH
T ss_pred             ccceeeEEEecC---CCccceEECCCCCEEEEEecCCCceEE-Eecc--CcceEEEE----------EeCCccceEEEec
Confidence            665533222111   112445667777655555443221110 0100  00000000          0001123456789


Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      +|+++..++ ++.+.|++....+.+..+..... ...+++||||+++++++.
T Consensus       228 dGk~~~v~~-~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~  277 (441)
T d1qnia2         228 AGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGK  277 (441)
T ss_dssp             TTCCBCCTT-CCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECT
T ss_pred             CCCEEEeCC-CCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCC
Confidence            999887654 67788887766666666665444 378999999999988755

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.42  E-value=0.00026  Score=57.54  Aligned_cols=236  Identities=9%  Similarity=0.091  Sum_probs=132.0

Q ss_pred             CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC---C----CceeeEEEe--CCceEEE-EecCCcEEEEEcC
Q psy11885         17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH---S----DPVLDCCFQ--DAVHSFS-GGLDCTLKMFDFN   86 (327)
Q Consensus        17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h---~----~~v~~~~~~--~~~~~~s-gs~Dg~i~vwd~~   86 (327)
                      ..+.|+++++ ++++++-...+.|++||.+ ++....+..   .    .....+++.  .+..++. .+.++.|..++..
T Consensus        24 ~P~gvavd~d-g~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQ-NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTT-CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCC-CCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            4679999995 4666766667899999976 443332321   1    112334442  2334443 3445677777765


Q ss_pred             CCceeeee-cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---Cc--EEEEecCCCeEEEEeCCCeE
Q psy11885         87 TQTETVIG-THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DK--VFTMSLCGEKFVVGTAGRKV  160 (327)
Q Consensus        87 ~~~~~~~~-~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~d~~v  160 (327)
                      ......+. ........+++.++++.+++....+.+.+++.. ++.+..+...   ..  .+++...++.+++....+.|
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccce
Confidence            44333332 334556789999999988887778889999854 5555554321   12  23445556666667778899


Q ss_pred             EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885        161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA  240 (327)
Q Consensus       161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  240 (327)
                      ++||... +.+........-..+..+++.++++.+++-..+ ...|..++....   ....+...    ...   .....
T Consensus       181 ~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~-~~~v~~f~~~G~---~~~~~~~~----~~~---~~p~~  248 (279)
T d1q7fa_         181 KVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHN-NFNLTIFTQDGQ---LISALESK----VKH---AQCFD  248 (279)
T ss_dssp             EEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSS-SCEEEEECTTSC---EEEEEEES----SCC---SCEEE
T ss_pred             eeeecCC-ceeeeecccccccCCcccccccCCeEEEEECCC-CcEEEEECCCCC---EEEEEeCC----CCC---CCEeE
Confidence            9999754 222221111111224566666766644433322 223434443221   11111100    000   12467


Q ss_pred             EEEecCCCeEEEecCCCeEEEEeCCCce
Q psy11885        241 ISFHQEYNTFATGGSDGYVNIWDGFNKK  268 (327)
Q Consensus       241 v~~spd~~~lasgs~dg~i~iWd~~~~~  268 (327)
                      +++.|||.+++ ++.++.|++|......
T Consensus       249 vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         249 VALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             EEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            89999997555 5578999999876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.38  E-value=0.00037  Score=57.24  Aligned_cols=225  Identities=11%  Similarity=0.024  Sum_probs=130.1

Q ss_pred             EEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecC---
Q psy11885         20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTH---   96 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h---   96 (327)
                      ...|++.++.++.+--..+.|..||..+++... +.....+.++++.+...++.++.+ .+.++|..+++...+...   
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~   99 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESD   99 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTT
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EECCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecC
Confidence            456887666666665567899999999987543 334456777777433444445544 588999888776544321   


Q ss_pred             --CccEEEEEEeCCCCEEEEEECC----CeEEEEeCCCCceeeeeeC--CCcEEEEecCCCeEEE-EeCCCeEEEEECCC
Q psy11885         97 --DQPIRAVEYSDEVNCILTGSWD----TSVKMWDPRSSRCVGNYTQ--PDKVFTMSLCGEKFVV-GTAGRKVCIWDLRN  167 (327)
Q Consensus        97 --~~~V~~l~~~~~~~~l~sgs~d----~~i~lwdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~d~~v~iwD~~~  167 (327)
                        ...++.+.+.++|+..++...+    +.-.+|.+..++.......  ......++++++.++. -+..+.|..+++..
T Consensus       100 ~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~  179 (295)
T d2ghsa1         100 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  179 (295)
T ss_dssp             CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecc
Confidence              2347888999999876654322    2334555444443322221  1122344455554433 34455666665432


Q ss_pred             CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885        168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY  247 (327)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~  247 (327)
                      ......                  .          ...+. .+..               ...     .....+++..+|
T Consensus       180 ~~~~~~------------------~----------~~~~~-~~~~---------------~~~-----g~pdG~~vD~~G  210 (295)
T d2ghsa1         180 RTGLPT------------------G----------KAEVF-IDST---------------GIK-----GGMDGSVCDAEG  210 (295)
T ss_dssp             TTCCBS------------------S----------CCEEE-EECT---------------TSS-----SEEEEEEECTTS
T ss_pred             cccccc------------------c----------ceEEE-eccC---------------ccc-----ccccceEEcCCC
Confidence            110000                  0          00000 0000               000     024567888999


Q ss_pred             CeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEEC-CCCCEEEEEE
Q psy11885        248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS-YDGNVLAIAC  296 (327)
Q Consensus       248 ~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fs-pdg~~la~~~  296 (327)
                      .+.++.-..+.|..|| .+++.+..+.-....+++++|- ||.+.|.+.+
T Consensus       211 nlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         211 HIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             CEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             CEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            8888776778999999 4678887776555568999995 7877776554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.33  E-value=0.00045  Score=58.52  Aligned_cols=247  Identities=9%  Similarity=0.056  Sum_probs=123.4

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC-CeEEEEe--cCCCceeeEEEe-CCceE--EEEe-cCCcEEEEEcC
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN-NNLRLKY--AHSDPVLDCCFQ-DAVHS--FSGG-LDCTLKMFDFN   86 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~--~h~~~v~~~~~~-~~~~~--~sgs-~Dg~i~vwd~~   86 (327)
                      ....+.-|+|+|+ +++|.++.. +.+..|.+.. +.+....  ........+.++ ++..+  +++. ..++|..+.+.
T Consensus        38 ~~~~~s~la~s~d-~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          38 QDEPISWMTFDHE-RKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTT-SSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCCEEEEcCC-CCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence            4455678999996 466666554 5677777653 3332222  122223344443 34432  2221 23444444332


Q ss_pred             CC-------------ce-eee----ecCCccEEEEEEeCCCCEEEEEEC-CCeEEEEeCCC-Ccee--eeeeC--C---C
Q psy11885         87 TQ-------------TE-TVI----GTHDQPIRAVEYSDEVNCILTGSW-DTSVKMWDPRS-SRCV--GNYTQ--P---D  139 (327)
Q Consensus        87 ~~-------------~~-~~~----~~h~~~V~~l~~~~~~~~l~sgs~-d~~i~lwdl~~-~~~~--~~~~~--~---~  139 (327)
                      ..             .. ...    .....-+.++.|+|+|++++++.. ..+|.+|+... ++..  .....  +   .
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            11             00 000    011224789999999998888764 46788887643 3222  11111  1   1


Q ss_pred             cEEEEecCCCeEEEEe-CCCeEEEEECCCCccceeeeccc-----------------ceeeeEEeEEeeCCCceEEEeec
Q psy11885        140 KVFTMSLCGEKFVVGT-AGRKVCIWDLRNMGYIMQRRESS-----------------LKFQTRCIKCFPNKQGYVLSSIE  201 (327)
Q Consensus       140 ~~~~~~~~~~~~~~~~-~d~~v~iwD~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~  201 (327)
                      .-+.++++++.+++.. .+++|.+||+...+.........                 .......+.++|+++.+.++...
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~  275 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence            2366778888776554 57899999986543221110000                 01123456777887766655321


Q ss_pred             -Ce---EEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec-CCCeEEEe-cCCCeEEEEeCCCc
Q psy11885        202 -GR---AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATG-GSDGYVNIWDGFNK  267 (327)
Q Consensus       202 -~~---~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp-d~~~lasg-s~dg~i~iWd~~~~  267 (327)
                       ..   ..+..+...... .+............+    .....++++| +|++|+++ ..+++|.+|+....
T Consensus       276 ~~~~~~~~i~~~~~~~~g-~~~~~~~~~~~~~~G----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         276 NKFELQGYIAGFKLRDCG-SIEKQLFLSPTPTSG----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSTTSCCEEEEEEECTTS-CEEEEEEEEECSSCC----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCccceEEEEEEecCCC-ceeeEeEeeEEEcCC----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence             11   112222221110 011110001000000    0245689998 78977665 56799999986543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.33  E-value=0.0002  Score=60.73  Aligned_cols=265  Identities=11%  Similarity=0.083  Sum_probs=133.4

Q ss_pred             EEEEEC--CCcEEEE--ECCCCeEEEE----ecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee-eee--cCCc
Q psy11885         31 LLASSW--DCNVSLY--DITNNNLRLK----YAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET-VIG--THDQ   98 (327)
Q Consensus        31 l~s~~~--d~~i~iw--d~~~~~~~~~----~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~--~h~~   98 (327)
                      |++|++  .+.|.++  |.+++++...    .....++..++|+ ++..++++. .+.+..|.++..... ...  ....
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCCC
Confidence            566654  4566554  4455554221    2244556678895 777777776 456888877643321 111  1122


Q ss_pred             cEEEEEEeCCCCEEE--EEEC-CCeEEEEeC------------CC-Cce---eeeee--C--CCcEEEEecCCCeEEEEe
Q psy11885         99 PIRAVEYSDEVNCIL--TGSW-DTSVKMWDP------------RS-SRC---VGNYT--Q--PDKVFTMSLCGEKFVVGT  155 (327)
Q Consensus        99 ~V~~l~~~~~~~~l~--sgs~-d~~i~lwdl------------~~-~~~---~~~~~--~--~~~~~~~~~~~~~~~~~~  155 (327)
                      ....+.++++++.++  ++.+ .+.|..+.+            .. ++.   .....  .  +.....++++|++++++.
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            234556677776433  2221 344443332            11 111   11111  1  123466788898877765


Q ss_pred             C-CCeEEEEECCCCccceee---ecccceeeeEEeEEeeCCCceEE-EeecCeEEEEEccCCcccccceeeeeeeeecc-
Q psy11885        156 A-GRKVCIWDLRNMGYIMQR---RESSLKFQTRCIKCFPNKQGYVL-SSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE-  229 (327)
Q Consensus       156 ~-d~~v~iwD~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~-  229 (327)
                      . ...|.+|+..........   ........++.+.++|+++.+.+ ...++.+.++.++......  ........... 
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~--~~~~~~~~~~~~  241 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP--VYTHHSFPLIPP  241 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE--EEEEEEEESSCT
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE--EEEeeeeccccc
Confidence            4 458888876543322111   11111234577889998876544 4445666665555432111  11111010000 


Q ss_pred             -------CCeeeEEEeeEEEEecCCCeEEEecC------CCeEEEEeCCCceeeee------cCcCCcceEEEEECC-CC
Q psy11885        230 -------DGIEKIYPVNAISFHQEYNTFATGGS------DGYVNIWDGFNKKRLCQ------FHRYDTGITSLCFSY-DG  289 (327)
Q Consensus       230 -------~~~~~~~~v~~v~~spd~~~lasgs~------dg~i~iWd~~~~~~~~~------~~~~~~~v~~l~fsp-dg  289 (327)
                             ...........+.++|||++|+++..      ...|-.|++.....+..      .......-..++|+| +|
T Consensus       242 ~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G  321 (365)
T d1jofa_         242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             cccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC
Confidence                   00111123457899999999887632      23466676544222211      111122346799998 89


Q ss_pred             CEEEEEEcc
Q psy11885        290 NVLAIACSY  298 (327)
Q Consensus       290 ~~la~~~~~  298 (327)
                      ++|+++...
T Consensus       322 ~~l~va~~~  330 (365)
T d1jofa_         322 EWMAITDDQ  330 (365)
T ss_dssp             TEEEEECSS
T ss_pred             CEEEEEeCC
Confidence            999888643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.25  E-value=0.00079  Score=55.78  Aligned_cols=249  Identities=13%  Similarity=0.039  Sum_probs=141.3

Q ss_pred             eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE-ecCCCceeeEEEe-CCceEEEEec--CCcEEEEE--cCCCcee
Q psy11885         18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK-YAHSDPVLDCCFQ-DAVHSFSGGL--DCTLKMFD--FNTQTET   91 (327)
Q Consensus        18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~h~~~v~~~~~~-~~~~~~sgs~--Dg~i~vwd--~~~~~~~   91 (327)
                      +-.++|.+++ .++++-...+.|..|+..+++.... .........+++. ++..+++...  .....++.  ..+....
T Consensus        42 lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          42 LEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             EEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             cEeCEECCCC-CEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            4588999964 5666666788999999888764433 3444567788885 5554444322  23334443  3333332


Q ss_pred             eeecC---CccEEEEEEeCCCCEEEEEEC------CCeEEEEeCCCCceeeeeeC--CCcEEEEecCCCeEEEE-eCCCe
Q psy11885         92 VIGTH---DQPIRAVEYSDEVNCILTGSW------DTSVKMWDPRSSRCVGNYTQ--PDKVFTMSLCGEKFVVG-TAGRK  159 (327)
Q Consensus        92 ~~~~h---~~~V~~l~~~~~~~~l~sgs~------d~~i~lwdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~d~~  159 (327)
                      ....+   ....+.+++.++|+..++-..      .+.+..++...+........  ...-++++++++.|+++ +..+.
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~  200 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR  200 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCc
Confidence            22222   234678999999986665432      13355555543322211111  11235666777765444 56678


Q ss_pred             EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885        160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN  239 (327)
Q Consensus       160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  239 (327)
                      |..||+........       .....                    .......                 .     ....
T Consensus       201 I~~~d~~~~g~~~~-------~~~~~--------------------~~~~~~~-----------------~-----~~Pd  231 (319)
T d2dg1a1         201 LHRIALEDDGVTIQ-------PFGAT--------------------IPYYFTG-----------------H-----EGPD  231 (319)
T ss_dssp             EEEEEECTTSSSEE-------EEEEE--------------------EEEECCS-----------------S-----SEEE
T ss_pred             eEEEEEcCCCceec-------cccce--------------------eeeccCC-----------------c-----ccee
Confidence            88887653211000       00000                    0000000                 0     0134


Q ss_pred             EEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc------CCcceEEEEECCCCCEEEEEEccccccCCCCCCCCCCc
Q psy11885        240 AISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR------YDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNN  313 (327)
Q Consensus       240 ~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~------~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~  313 (327)
                      .+++.++|++.++...++.|.++|- +|+.+..+..      +...+++++|.|++..|.+...+.-   .    -....
T Consensus       232 Gl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~---~----~~~g~  303 (319)
T d2dg1a1         232 SCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIE---M----GGGSM  303 (319)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGG---G----TCCEE
T ss_pred             eeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCC---c----CCcee
Confidence            6889999998888888999999994 6787766532      2234789999998887776654321   1    13455


Q ss_pred             EEEEEcccccc
Q psy11885        314 IFIRHVTDQET  324 (327)
Q Consensus       314 ~~~~~~~~~~~  324 (327)
                      +|.+.+.-+|+
T Consensus       304 l~~~~~~~~G~  314 (319)
T d2dg1a1         304 LYTVNGFAKGH  314 (319)
T ss_dssp             EEEEECSSCBC
T ss_pred             EEEEeCCCccc
Confidence            77776655554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.07  E-value=0.00052  Score=56.34  Aligned_cols=108  Identities=8%  Similarity=-0.025  Sum_probs=70.0

Q ss_pred             ceeeEEE-eCCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce--eeee
Q psy11885         59 PVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC--VGNY  135 (327)
Q Consensus        59 ~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~--~~~~  135 (327)
                      .+..+++ +++..+++...+++|..|+-+.. ...+......+.+++++++|+.+++...++.+..|++.....  ....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~  107 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL  107 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc
Confidence            3556777 47777778888898888885543 344455567789999999999999888888888887654321  1111


Q ss_pred             e--CCCc--EEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885        136 T--QPDK--VFTMSLCGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus       136 ~--~~~~--~~~~~~~~~~~~~~~~d~~v~iwD~~~  167 (327)
                      .  ....  -+.+..++..+++-+.++.+..+|.+.
T Consensus       108 ~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~  143 (302)
T d2p4oa1         108 TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ  143 (302)
T ss_dssp             ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred             ccCCccccceeEEccCCCEEeeccccccceeeeccC
Confidence            1  1111  233445555555556666777777654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.00  E-value=0.00055  Score=54.90  Aligned_cols=182  Identities=13%  Similarity=0.089  Sum_probs=97.2

Q ss_pred             cEEEEEEeCCCCEEEEE-ECCCeEEEEeCCCCcee-eeeeC--CCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceee
Q psy11885         99 PIRAVEYSDEVNCILTG-SWDTSVKMWDPRSSRCV-GNYTQ--PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQR  174 (327)
Q Consensus        99 ~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~  174 (327)
                      .-..|+++++|+..++. +..+.+..++....... .....  ...-+++..++..+++....+.+++++-.+...+.. 
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~-   93 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP-   93 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC-
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee-
Confidence            45789999999866654 45577888876543322 12221  112356666777666666666677765444322111 


Q ss_pred             ecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec
Q psy11885        175 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG  254 (327)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs  254 (327)
                       .... ..+..+++.+++..++.-.......  .++........   ..     ..+   ......++++|++..+++..
T Consensus        94 -~~~~-~~p~~iavd~~g~i~v~d~~~~~~~--~~~~~~~~~~~---~~-----~~~---~~~p~~i~~~~~g~~~v~~~  158 (260)
T d1rwia_          94 -FDGL-NYPEGLAVDTQGAVYVADRGNNRVV--KLAAGSKTQTV---LP-----FTG---LNDPDGVAVDNSGNVYVTDT  158 (260)
T ss_dssp             -CCSC-CSEEEEEECTTCCEEEEEGGGTEEE--EECTTCSSCEE---CC-----CCS---CCSCCEEEECTTCCEEEEEG
T ss_pred             -eeee-eecccccccccceeEeecccccccc--ccccccceeee---ee-----ecc---cCCcceeeecCCCCEeeecc
Confidence             1111 1235566656555444332222222  22222111000   00     000   11246789999999888888


Q ss_pred             CCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885        255 SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC  296 (327)
Q Consensus       255 ~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~  296 (327)
                      .++.|..++.............-.....|++.++|+++++-.
T Consensus       159 ~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~  200 (260)
T d1rwia_         159 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH  200 (260)
T ss_dssp             GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET
T ss_pred             ccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec
Confidence            889999999765443332222223458899999998776553

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.96  E-value=0.0022  Score=51.20  Aligned_cols=94  Identities=10%  Similarity=0.036  Sum_probs=61.2

Q ss_pred             EEecC--CCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEE-ecCC-----cEEEEEcCCCceee
Q psy11885         22 KFAPN--SNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSG-GLDC-----TLKMFDFNTQTETV   92 (327)
Q Consensus        22 ~fs~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sg-s~Dg-----~i~vwd~~~~~~~~   92 (327)
                      ..+|+  ++ .++-.+ ++.|.+.|+.+++...+..+...+...+|+ ++..++-. ..++     .|.+.+..++....
T Consensus         5 ~~sPdi~G~-~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGD-RIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETT-EEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCC-EEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35786  55 444443 567888899999877766677778888896 77777643 2222     35666766665544


Q ss_pred             eecC-------CccEEEEEEeCCCCEEEEEEC
Q psy11885         93 IGTH-------DQPIRAVEYSDEVNCILTGSW  117 (327)
Q Consensus        93 ~~~h-------~~~V~~l~~~~~~~~l~sgs~  117 (327)
                      +..+       ........|+|+|+.|+....
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            3222       223467889999998886533

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.94  E-value=0.003  Score=50.97  Aligned_cols=152  Identities=11%  Similarity=0.118  Sum_probs=97.1

Q ss_pred             CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCce
Q psy11885         14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTE   90 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~   90 (327)
                      .......+++.++ +.++++....+.+.+++.....+...-  .+......+++ +++...++....+.|.+||.+....
T Consensus       112 ~~~~p~~~avd~~-G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~  190 (279)
T d1q7fa_         112 ILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL  190 (279)
T ss_dssp             TCSCEEEEEECTT-SCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE
T ss_pred             cccccceeccccC-CcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCcee
Confidence            3455678888885 456666556677888876544333221  23344566666 4566666777788999999765543


Q ss_pred             eeee--cCCccEEEEEEeCCCCEEEEEEC-CCeEEEEeCCCCceeeeeeCC---Cc--EEEEecCCCeEEEEeCCCeEEE
Q psy11885         91 TVIG--THDQPIRAVEYSDEVNCILTGSW-DTSVKMWDPRSSRCVGNYTQP---DK--VFTMSLCGEKFVVGTAGRKVCI  162 (327)
Q Consensus        91 ~~~~--~h~~~V~~l~~~~~~~~l~sgs~-d~~i~lwdl~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~d~~v~i  162 (327)
                      ..+.  +.......|++.++|+.+++-.. +++|.+|+. +++.+..+...   ..  .+++.++|. +++...++.|++
T Consensus       191 ~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V~~~n~~v~~  268 (279)
T d1q7fa_         191 RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS-VVLASKDYRLYI  268 (279)
T ss_dssp             EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE-EEEEETTTEEEE
T ss_pred             eeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCc-EEEEeCCCeEEE
Confidence            3332  23445688999999997766544 457999994 57766665422   12  345566664 566677889999


Q ss_pred             EECCCC
Q psy11885        163 WDLRNM  168 (327)
Q Consensus       163 wD~~~~  168 (327)
                      |...+.
T Consensus       269 fr~~~~  274 (279)
T d1q7fa_         269 YRYVQL  274 (279)
T ss_dssp             EECSCC
T ss_pred             EEeeee
Confidence            987654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.90  E-value=0.0031  Score=51.97  Aligned_cols=148  Identities=7%  Similarity=0.049  Sum_probs=78.4

Q ss_pred             eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-CCC----ceeeEEEe-CCceEEEEec---------------
Q psy11885         18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HSD----PVLDCCFQ-DAVHSFSGGL---------------   76 (327)
Q Consensus        18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~~----~v~~~~~~-~~~~~~sgs~---------------   76 (327)
                      -+.++|++++ ..|++++..+.|...+..++....... ...    ..+.+++. ++...++-..               
T Consensus        73 P~Gl~~~~dg-~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          73 PAGCQCDRDA-NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             EEEEEECSSS-SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             ceeEEEeCCC-CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            4579999965 456666767778888987665433221 111    24567774 4544444221               


Q ss_pred             CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCC----EE-EEEECCCeEEEEeCCCCceee------eeeCCC----cE
Q psy11885         77 DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVN----CI-LTGSWDTSVKMWDPRSSRCVG------NYTQPD----KV  141 (327)
Q Consensus        77 Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~----~l-~sgs~d~~i~lwdl~~~~~~~------~~~~~~----~~  141 (327)
                      +|.|..++.+.. ...+...-..-+.++|+++++    .| ++-+..++|..||+.....+.      .+....    .-
T Consensus       152 ~G~v~~~~~dg~-~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG  230 (314)
T d1pjxa_         152 FGSIYCFTTDGQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             CEEEEEECTTSC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             CceEEEEeecCc-eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccccee
Confidence            122333332222 222222222346788888764    34 445677889888875432221      111111    12


Q ss_pred             EEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885        142 FTMSLCGEKFVVGTAGRKVCIWDLRN  167 (327)
Q Consensus       142 ~~~~~~~~~~~~~~~d~~v~iwD~~~  167 (327)
                      +++...|+.+++....+.|.+||.+.
T Consensus       231 iavD~~GnlyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         231 MDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             eEEecCCcEEEEEcCCCEEEEEeCCC
Confidence            44555666666656667777777553

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.0064  Score=52.93  Aligned_cols=102  Identities=8%  Similarity=-0.020  Sum_probs=64.0

Q ss_pred             CCCCeeEEEEecCCCcEEEEE---------ECCCcEEEEECCCCeEEEEec---CCCceeeEEEe-CCceEEEEecCCcE
Q psy11885         14 PEDGITAVKFAPNSNQFLLAS---------SWDCNVSLYDITNNNLRLKYA---HSDPVLDCCFQ-DAVHSFSGGLDCTL   80 (327)
Q Consensus        14 ~~~~I~~i~fs~~~~~~l~s~---------~~d~~i~iwd~~~~~~~~~~~---h~~~v~~~~~~-~~~~~~sgs~Dg~i   80 (327)
                      .+-.+....|||++ ++++..         +..+.+.++|+.+++......   ....+....|+ ++..++-.. ++.|
T Consensus        59 ~~~~~~~~~~SpD~-~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl  136 (465)
T d1xfda1          59 ESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNI  136 (465)
T ss_dssp             TTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEE
T ss_pred             cccccceeEECCCC-CeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceE
Confidence            33467888999975 555544         335788999999887544322   22334456774 787777665 6777


Q ss_pred             EEEEcCCCceeeee--cCCcc-----------------EEEEEEeCCCCEEEEEEC
Q psy11885         81 KMFDFNTQTETVIG--THDQP-----------------IRAVEYSDEVNCILTGSW  117 (327)
Q Consensus        81 ~vwd~~~~~~~~~~--~h~~~-----------------V~~l~~~~~~~~l~sgs~  117 (327)
                      .+.+..++....+.  +....                 -.++-|||||+.|+....
T Consensus       137 ~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             EEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            77777655432211  11111                 146789999999987653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00038  Score=61.11  Aligned_cols=142  Identities=8%  Similarity=0.100  Sum_probs=88.8

Q ss_pred             EEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC----CCceeeEEEe-CCceEEEE---------ecCCcEEEEEcC
Q psy11885         21 VKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH----SDPVLDCCFQ-DAVHSFSG---------GLDCTLKMFDFN   86 (327)
Q Consensus        21 i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h----~~~v~~~~~~-~~~~~~sg---------s~Dg~i~vwd~~   86 (327)
                      ..|.++ +.++. -..+|.|.+||+.+++.......    ...+....++ ++..++..         +..+.+.++|+.
T Consensus        22 ~~W~~~-~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          22 AKWISD-TEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CCBSSS-SCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CEEeCC-CcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            468875 45554 34578999999988774433321    2244555565 67776654         335678889998


Q ss_pred             CCceeeeec---CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---------------------CcEE
Q psy11885         87 TQTETVIGT---HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---------------------DKVF  142 (327)
Q Consensus        87 ~~~~~~~~~---h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---------------------~~~~  142 (327)
                      ++....+..   ....+....|||||+.|+-.. ++.|.+.+..+++.++.....                     ...+
T Consensus       100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence            876654432   233455678999999988765 577888888766544332211                     1234


Q ss_pred             EEecCCCeEEEEeC-CCeEEEEEC
Q psy11885        143 TMSLCGEKFVVGTA-GRKVCIWDL  165 (327)
Q Consensus       143 ~~~~~~~~~~~~~~-d~~v~iwD~  165 (327)
                      -++++|+.|+.... +..|..+.+
T Consensus       179 ~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         179 WWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEE
T ss_pred             EECCCCCeEEEEEecccccceeec
Confidence            57888988887643 334555544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.48  E-value=0.015  Score=46.00  Aligned_cols=87  Identities=8%  Similarity=-0.056  Sum_probs=57.5

Q ss_pred             CceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEEC-C-----CeEEEEeCCCCceeeeeeC----
Q psy11885         68 AVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSW-D-----TSVKMWDPRSSRCVGNYTQ----  137 (327)
Q Consensus        68 ~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~-d-----~~i~lwdl~~~~~~~~~~~----  137 (327)
                      |++++..+ ++.|.+.|+.++....+..+...+...+|||||+.|+-... +     ..|.++++.+++..+....    
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~   90 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKS   90 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEE
T ss_pred             CCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCc
Confidence            66666554 56677779998887777777778899999999999885432 2     2477778777765432111    


Q ss_pred             -----CCcEEEEecCCCeEEEEe
Q psy11885        138 -----PDKVFTMSLCGEKFVVGT  155 (327)
Q Consensus       138 -----~~~~~~~~~~~~~~~~~~  155 (327)
                           ......++++++.++...
T Consensus        91 ~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          91 TGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             ETTEECSEEEEECTTCCEEEEEC
T ss_pred             cCccccccccccCCCCCEEEEEE
Confidence                 122345677777776643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.31  E-value=0.034  Score=46.32  Aligned_cols=115  Identities=14%  Similarity=0.107  Sum_probs=69.4

Q ss_pred             CCeeEEEEecCCCcEEEEEECCC-----------cEEEEECCCCeEE----EEecCCCceeeEEE-eCCceEEEEecC-C
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDC-----------NVSLYDITNNNLR----LKYAHSDPVLDCCF-QDAVHSFSGGLD-C   78 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~-----------~i~iwd~~~~~~~----~~~~h~~~v~~~~~-~~~~~~~sgs~D-g   78 (327)
                      ..+.+ +.-+.++++++.||.+.           .+.+||..+++-.    ....|.......++ .++..++.|+.+ .
T Consensus        20 ~~~~~-a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~   98 (387)
T d1k3ia3          20 VPAAA-AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK   98 (387)
T ss_dssp             CCSEE-EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT
T ss_pred             cccEE-EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCc
Confidence            34433 33444568888888531           3779999887621    11223222333444 577777777655 5


Q ss_pred             cEEEEEcCCCceeeeecC--CccEEEEEEeCCCCEEEEEECC------CeEEEEeCCCCce
Q psy11885         79 TLKMFDFNTQTETVIGTH--DQPIRAVEYSDEVNCILTGSWD------TSVKMWDPRSSRC  131 (327)
Q Consensus        79 ~i~vwd~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~sgs~d------~~i~lwdl~~~~~  131 (327)
                      ++.+||..+..-......  ...-...+..+||+.++.|+.+      +.+.+||+.+++.
T Consensus        99 ~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3          99 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            899999887654332211  1112345667889988888753      4689999987753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.71  E-value=0.11  Score=42.21  Aligned_cols=185  Identities=10%  Similarity=0.106  Sum_probs=93.8

Q ss_pred             cEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee-CCCc--EEEEecCCCeEEEEeCC----CeEEEEECCCCccc
Q psy11885         99 PIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDK--VFTMSLCGEKFVVGTAG----RKVCIWDLRNMGYI  171 (327)
Q Consensus        99 ~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~d----~~v~iwD~~~~~~~  171 (327)
                      ....++|.++|++.++-...++|..||..+++....+. ....  .+.+..+|..+++...+    +.+...|.......
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            45678999999977777788999999988765444332 2222  34555667655554332    23444444433211


Q ss_pred             eeeecccceeeeEEeEEeeCCCceEEEeec-----CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC
Q psy11885        172 MQRRESSLKFQTRCIKCFPNKQGYVLSSIE-----GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE  246 (327)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd  246 (327)
                      ............+-+.+.+++..++. ...     ....++.++....  .+....          ......+.++|+||
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vt-d~~~~~~~~~g~v~~~~~dg~--~~~~~~----------~~~~~pnGia~s~d  187 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFT-DFRGYSTNPLGGVYYVSPDFR--TVTPII----------QNISVANGIALSTD  187 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEE-ECCCBTTBCCEEEEEECTTSC--CEEEEE----------EEESSEEEEEECTT
T ss_pred             eeccCCCcccCCcceeEEeccceeec-ccccccccCcceeEEEecccc--eeEEEe----------eccceeeeeeeccc
Confidence            11100000111233445555543332 211     1122333322110  000000          01112577999999


Q ss_pred             CCeE-EEecCCCeEEEEeCCCc-eee--------eecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885        247 YNTF-ATGGSDGYVNIWDGFNK-KRL--------CQFHRYDTGITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       247 ~~~l-asgs~dg~i~iWd~~~~-~~~--------~~~~~~~~~v~~l~fspdg~~la~~~~  297 (327)
                      ++.| ++-+..+.|+.|++... ...        ...... ..-..|++.++|++.++...
T Consensus       188 g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~-~~PdGl~vD~~G~l~Va~~~  247 (319)
T d2dg1a1         188 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYG  247 (319)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEET
T ss_pred             cceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc-cceeeeeEcCCCCEEEEEcC
Confidence            9866 55566789999986532 111        111111 22357899999987766543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.91  E-value=0.5  Score=41.62  Aligned_cols=141  Identities=10%  Similarity=0.069  Sum_probs=83.9

Q ss_pred             EEEEEECCCcEEEEECCCCeEEEEec----C-CCceeeE-EEeCCceEEEEe------cCCcEEEEEcCCCceeeeec-C
Q psy11885         30 FLLASSWDCNVSLYDITNNNLRLKYA----H-SDPVLDC-CFQDAVHSFSGG------LDCTLKMFDFNTQTETVIGT-H   96 (327)
Q Consensus        30 ~l~s~~~d~~i~iwd~~~~~~~~~~~----h-~~~v~~~-~~~~~~~~~sgs------~Dg~i~vwd~~~~~~~~~~~-h   96 (327)
                      .++.++.|+.+.--|.++|++.-...    + ...+.+. ...+ ..++.+.      .+|.|+-+|+++++...... .
T Consensus       117 ~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  195 (571)
T d2ad6a1         117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEecc
Confidence            46667889988888999998643332    1 1112111 1223 3444443      36789999999887643210 0


Q ss_pred             -------------------------------------CccE-EEEEEeCCCCEEEEEEC----------------CCeEE
Q psy11885         97 -------------------------------------DQPI-RAVEYSDEVNCILTGSW----------------DTSVK  122 (327)
Q Consensus        97 -------------------------------------~~~V-~~l~~~~~~~~l~sgs~----------------d~~i~  122 (327)
                                                           ...+ ....+.++...++.+..                ...+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svv  275 (571)
T d2ad6a1         196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW  275 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred             CCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccccee
Confidence                                                 1112 22456677776665544                34677


Q ss_pred             EEeCCCCceeeeeeCC-C-----------cEEEEecCCC---eEEEEeCCCeEEEEECCCCccc
Q psy11885        123 MWDPRSSRCVGNYTQP-D-----------KVFTMSLCGE---KFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus       123 lwdl~~~~~~~~~~~~-~-----------~~~~~~~~~~---~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                      ..|.++++.++.++.. +           ....+..++.   .++..+.+|.+.++|.++++.+
T Consensus       276 Ald~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         276 GRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             eeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEe
Confidence            8899999988766531 1           1122333443   2566788999999999888754

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.56  E-value=0.42  Score=38.13  Aligned_cols=204  Identities=12%  Similarity=0.181  Sum_probs=116.3

Q ss_pred             EEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCc--eeeeecCC
Q psy11885         20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT--ETVIGTHD   97 (327)
Q Consensus        20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~--~~~~~~h~   97 (327)
                      +.-.+|. .+.||.-+ ..+++++|+++.+.........+|.-=.|-+...|+--. +..|..|+++...  .+.+..|.
T Consensus        67 sAIMhP~-~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~  143 (327)
T d1utca2          67 SAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHS  143 (327)
T ss_dssp             EEEECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             hhhcCCC-CcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEc-CCceEEEcccCCCCchhhhhhcc
Confidence            4567884 46666555 679999999999876666666777666775555555443 5689999996532  23444442


Q ss_pred             ----ccEEEEEEeCCCCEEEEE---ECC----CeEEEEeCCCCceeeeeeCCCcEEE-EecCCC-----eEEEE---eCC
Q psy11885         98 ----QPIRAVEYSDEVNCILTG---SWD----TSVKMWDPRSSRCVGNYTQPDKVFT-MSLCGE-----KFVVG---TAG  157 (327)
Q Consensus        98 ----~~V~~l~~~~~~~~l~sg---s~d----~~i~lwdl~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~---~~d  157 (327)
                          ..|-....+++.++++..   ..+    |.++||..+.+. -+.++.+...+. +...|+     .|+.+   ...
T Consensus       144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~  222 (327)
T d1utca2         144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  222 (327)
T ss_dssp             GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred             cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence                467777788889887532   223    567899876543 333444332221 222221     11111   122


Q ss_pred             CeEEEEECCCCccceeeecccceeeeEEeE-EeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885        158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIK-CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY  236 (327)
Q Consensus       158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  236 (327)
                      ++++|-++.....      ...+++.+.+. ++|..                                       ....+
T Consensus       223 ~kLhIiEig~~~~------g~~~f~kk~vdi~fppe---------------------------------------a~~DF  257 (327)
T d1utca2         223 GKLHIIEVGTPPT------GNQPFPKKAVDVFFPPE---------------------------------------AQNDF  257 (327)
T ss_dssp             EEEEEEECSCCCT------TCCCCCCEEEECCCCTT---------------------------------------CTTCC
T ss_pred             cEEEEEEcCCCcc------CCCCCcceeEEEECCcc---------------------------------------ccCCc
Confidence            4566666543210      00111101100 00000                                       00012


Q ss_pred             EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885        237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF  273 (327)
Q Consensus       237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~  273 (327)
                      || ++..|+....+..-+.-|.|.+||++++..+..-
T Consensus       258 Pv-amqvs~kygiiyviTK~G~i~lyDleTgt~i~~n  293 (327)
T d1utca2         258 PV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  293 (327)
T ss_dssp             EE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EE-EEEeeccCCEEEEEecCcEEEEEEcccccEEEEe
Confidence            33 4677888888888889999999999999877643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.75  E-value=0.66  Score=38.93  Aligned_cols=18  Identities=17%  Similarity=0.082  Sum_probs=15.3

Q ss_pred             eEEEEECCCCCEEEEEEc
Q psy11885        280 ITSLCFSYDGNVLAIACS  297 (327)
Q Consensus       280 v~~l~fspdg~~la~~~~  297 (327)
                      ...+.+||||+++++++.
T Consensus       277 PHGV~vSPDGKyi~VaGK  294 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGK  294 (459)
T ss_dssp             CCCEEECTTSSEEEEECT
T ss_pred             CCceEECCCCCEEEEeCC
Confidence            356899999999999865

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.45  E-value=0.39  Score=42.21  Aligned_cols=73  Identities=12%  Similarity=0.121  Sum_probs=46.2

Q ss_pred             CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc----EEEEecCCCe
Q psy11885         78 CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK----VFTMSLCGEK  150 (327)
Q Consensus        78 g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~----~~~~~~~~~~  150 (327)
                      |.+.-||+.+++.........+...=...-.+.+++.|+.|+.++.+|.++|+.++++..+..    .+.+..+|++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            456677777776543222222221111233467888999999999999999999998875432    3445556654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.44  E-value=1.2  Score=37.42  Aligned_cols=99  Identities=10%  Similarity=0.062  Sum_probs=60.5

Q ss_pred             EEEEecC--CCcEEEEEE-CCCcEEEEECCCCeEEEEe--cCCCceeeEEE---eCCceEEEEecCC-------------
Q psy11885         20 AVKFAPN--SNQFLLASS-WDCNVSLYDITNNNLRLKY--AHSDPVLDCCF---QDAVHSFSGGLDC-------------   78 (327)
Q Consensus        20 ~i~fs~~--~~~~l~s~~-~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~---~~~~~~~sgs~Dg-------------   78 (327)
                      .++|..-  ++++|++.. .+..|.+-|+...+.....  .-...+..++.   ....+++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            5777741  246777665 6789999999998864432  22334555554   2455666655432             


Q ss_pred             -----cEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECC
Q psy11885         79 -----TLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWD  118 (327)
Q Consensus        79 -----~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d  118 (327)
                           .+.+.|.++.+......-......++++++|+++++.+++
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEecc
Confidence                 2556777766543221122345578899999999887754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.36  E-value=1.5  Score=38.33  Aligned_cols=81  Identities=15%  Similarity=0.210  Sum_probs=53.4

Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcc-eEEEEECCCCC-EEEEEEccccccC-------CCCCCCCCCcEEE
Q psy11885        246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG-ITSLCFSYDGN-VLAIACSYNYELE-------TPPDPIPPNNIFI  316 (327)
Q Consensus       246 d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~-v~~l~fspdg~-~la~~~~~~~~~~-------~~~~~~~~~~~~~  316 (327)
                      .+.++++|+.||.++-+|..+|+.+.++...... -.-+.|.-||+ |||+.++.+....       ..+....-+.+++
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~  547 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLV  547 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEE
Confidence            4567778999999999999999999877532211 11257777885 6776665442111       1123345678999


Q ss_pred             EEcccccccC
Q psy11885        317 RHVTDQETKP  326 (327)
Q Consensus       317 ~~~~~~~~~~  326 (327)
                      |.|--++.-|
T Consensus       548 F~L~g~~~~~  557 (560)
T d1kv9a2         548 FALDGKAQLP  557 (560)
T ss_dssp             EEETCCCCCC
T ss_pred             EEeCCCCCCC
Confidence            9997666544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.22  E-value=1.2  Score=39.02  Aligned_cols=82  Identities=15%  Similarity=0.248  Sum_probs=54.2

Q ss_pred             ecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceE--EEEECCCCC-EEEEEEccccccCC---CCCCCCCCcEEEE
Q psy11885        244 HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT--SLCFSYDGN-VLAIACSYNYELET---PPDPIPPNNIFIR  317 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~--~l~fspdg~-~la~~~~~~~~~~~---~~~~~~~~~~~~~  317 (327)
                      +..+..+++|+.||.++.+|..+|+.+..+.-.. ++.  -+.|.-||+ |+|+.++.+.....   ....-..+.+|+|
T Consensus       485 stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~-~~~~~P~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F  563 (573)
T d1kb0a2         485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT-GVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTF  563 (573)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEE
T ss_pred             EEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC-CccccCEEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence            3467788889999999999999999998774322 111  156777886 66776665432211   1122256789999


Q ss_pred             EcccccccC
Q psy11885        318 HVTDQETKP  326 (327)
Q Consensus       318 ~~~~~~~~~  326 (327)
                      .|--.+.-|
T Consensus       564 ~l~g~~~~~  572 (573)
T d1kb0a2         564 VVGGKARMP  572 (573)
T ss_dssp             EETCBCCCC
T ss_pred             EeCCcCCCc
Confidence            886555444

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.66  E-value=0.51  Score=41.58  Aligned_cols=73  Identities=15%  Similarity=0.180  Sum_probs=43.6

Q ss_pred             CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc----EEEEecCCCe
Q psy11885         78 CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK----VFTMSLCGEK  150 (327)
Q Consensus        78 g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~----~~~~~~~~~~  150 (327)
                      |.|.-+|+++++......+..+..+=...-.+.+++.|+.|+.++.+|.++|+.++++..+..    .+.+..+|++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            346666666665443221111111101122456888899999999999999999998875432    2444556654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.56  E-value=0.56  Score=41.56  Aligned_cols=73  Identities=12%  Similarity=0.125  Sum_probs=45.2

Q ss_pred             CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC----cEEEEecCCCe
Q psy11885         78 CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD----KVFTMSLCGEK  150 (327)
Q Consensus        78 g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~----~~~~~~~~~~~  150 (327)
                      |.+.-||+.+++......+..+...=..+..+.+++.|+.|+.++.+|.++|+.++++..+.    ..+.+..+|++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ  529 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence            35666677666554322222222111123356788889999999999999999998886533    23445556654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.53  E-value=1.9  Score=33.97  Aligned_cols=148  Identities=9%  Similarity=-0.112  Sum_probs=85.6

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC--CC---ceeeEEE-eCCceEEEEec----CCcEEEEEc
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH--SD---PVLDCCF-QDAVHSFSGGL----DCTLKMFDF   85 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h--~~---~v~~~~~-~~~~~~~sgs~----Dg~i~vwd~   85 (327)
                      ..+.++++.++ +.+++ ++. .-+.++|..+++.......  ..   .++.+.+ +++...++...    .+.-.+|.+
T Consensus        59 ~~~~~i~~~~d-g~l~v-a~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          59 FMGSALAKISD-SKQLI-ASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SCEEEEEEEET-TEEEE-EET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCcEEEEEecC-CCEEE-EEe-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            46889999985 45555 444 4588999998886544321  11   3455565 35544444322    123456666


Q ss_pred             CCCceeeeecCCccEEEEEEeCCCCEEE-EEECCCeEEEEeCCCC--c----eeeeee--C-CC--cEEEEecCCCeEEE
Q psy11885         86 NTQTETVIGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWDPRSS--R----CVGNYT--Q-PD--KVFTMSLCGEKFVV  153 (327)
Q Consensus        86 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~-sgs~d~~i~lwdl~~~--~----~~~~~~--~-~~--~~~~~~~~~~~~~~  153 (327)
                      ..+....+...-..-+.++|+++++.++ +-+..+.|..+++...  .    ......  . ..  .-++++..|+..++
T Consensus       136 ~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva  215 (295)
T d2ghsa1         136 AKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA  215 (295)
T ss_dssp             ETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred             cCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEee
Confidence            5554433222223457889999998665 4456788988876421  1    111111  1 11  12455666776666


Q ss_pred             EeCCCeEEEEECC
Q psy11885        154 GTAGRKVCIWDLR  166 (327)
Q Consensus       154 ~~~d~~v~iwD~~  166 (327)
                      ....+.|..||-.
T Consensus       216 ~~~~g~V~~~dp~  228 (295)
T d2ghsa1         216 RWGEGAVDRYDTD  228 (295)
T ss_dssp             EETTTEEEEECTT
T ss_pred             eeCCCceEEecCC
Confidence            6678889999964

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.53  E-value=1.8  Score=33.61  Aligned_cols=113  Identities=6%  Similarity=-0.004  Sum_probs=69.9

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-CCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETV   92 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~   92 (327)
                      ..|.+|+|++..+.+..+-..++.|+..++.++....... --..+..+++- -+..++ +-...+.|.+.+++......
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            3577899998655444444566889998887665433332 22356677773 344554 55557799999988765544


Q ss_pred             ee-cCCccEEEEEEeCCCCEEEEEECC---CeEEEEeCCC
Q psy11885         93 IG-THDQPIRAVEYSDEVNCILTGSWD---TSVKMWDPRS  128 (327)
Q Consensus        93 ~~-~h~~~V~~l~~~~~~~~l~sgs~d---~~i~lwdl~~  128 (327)
                      +. ..-.....|+++|...+++-....   ..|..-++..
T Consensus       116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG  155 (263)
T d1npea_         116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (263)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC
Confidence            33 333567899999987777654332   2344445543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.43  E-value=1.6  Score=32.82  Aligned_cols=221  Identities=9%  Similarity=0.074  Sum_probs=108.6

Q ss_pred             CCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCc---------------ee
Q psy11885         27 SNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT---------------ET   91 (327)
Q Consensus        27 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~---------------~~   91 (327)
                      ++.+|+++-..|.+.++-+.+++...+.  ..+|.....+..      +.|..+.+-|+..++               ..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt--kePI~~~~~Pk~------~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~   96 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN--REPINSVLDPHY------GVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ   96 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC--SSCCSEECEECT------TBSEEEEEEECSTTSCCEEEEEEETTSTTCEE
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe--cccccCcCCCcc------CcceEEEEeehhcCcceeeEEEEccCCCCeee
Confidence            4567788877899999988887744321  123333322211      113333333443332               12


Q ss_pred             eeecCC-ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEec-------------CCCeEEEEeC-
Q psy11885         92 VIGTHD-QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSL-------------CGEKFVVGTA-  156 (327)
Q Consensus        92 ~~~~h~-~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-  156 (327)
                      .+.... -.|.++++. +.+.+++|+......+|-++.|+.-.-...+...+..+.             ....|+++.. 
T Consensus        97 ~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~  175 (313)
T d2hu7a1          97 RLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLS  175 (313)
T ss_dssp             ECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETT
T ss_pred             EecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecc
Confidence            222222 346666664 446778888888889998888875433333322221111             2223455544 


Q ss_pred             CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecC--eE-EEEEccCCcccccceeeeeeeeeccCCee
Q psy11885        157 GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG--RA-AVEYLDTGPEMQKMKYAFKCHRIKEDGIE  233 (327)
Q Consensus       157 d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~i~~~~~~~~~~~~~~~~~~h~~~~~~~~  233 (327)
                      .|.+++++-+.+...              .+....+... ++..+.  .. .+ .+|.... ......+.......... 
T Consensus       176 SG~lri~tpkeGS~~--------------~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~-~yerve~P~kd~~sy~p-  237 (313)
T d2hu7a1         176 SGGLRVFDSGEGSFS--------------SASISPGMKV-TAGLETAREARLV-TVDPRDG-SVEDLELPSKDFSSYRP-  237 (313)
T ss_dssp             TEEEEEECCSSEEEE--------------EEEECTTSCE-EEEEEESSCEEEE-EECTTTC-CEEECCCSSCHHHHHCC-
T ss_pred             cCCEEEecCCCCccc--------------ceeEccCcee-eeccCCCCceEEE-EEecccC-ceeeeecCcccceeecc-
Confidence            777888876644211              1111112222 222211  11 11 1232210 00001111100000000 


Q ss_pred             eEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCc
Q psy11885        234 KIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT  278 (327)
Q Consensus       234 ~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~  278 (327)
                        -.|..+-+.|+++.++.+-.||.-+++.  +|+++...++...
T Consensus       238 --~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p~G~~~  278 (313)
T d2hu7a1         238 --TAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEAPQGNHG  278 (313)
T ss_dssp             --SEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECCCSSEEE
T ss_pred             --eEEEeeeeCCCCcEEEEEecCCchheee--cceEecCCCCccc
Confidence              0244566899999989999999999996  6777766554433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.35  E-value=3.3  Score=36.32  Aligned_cols=151  Identities=13%  Similarity=0.121  Sum_probs=89.3

Q ss_pred             EEEEecCC---CcEEEEEECCCcEEEEECCCCeEEEEecCC-----CceeeE-EEeCCceEEEEe------cCCcEEEEE
Q psy11885         20 AVKFAPNS---NQFLLASSWDCNVSLYDITNNNLRLKYAHS-----DPVLDC-CFQDAVHSFSGG------LDCTLKMFD   84 (327)
Q Consensus        20 ~i~fs~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~-----~~v~~~-~~~~~~~~~sgs------~Dg~i~vwd   84 (327)
                      .+++.++.   ...++.++.|+.+.--|.+++++.-.+...     ..+++. .+. +..++.|+      ..|.|+-+|
T Consensus       110 Gv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~~vivg~~~~e~~~~G~v~A~D  188 (596)
T d1w6sa_         110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYD  188 (596)
T ss_dssp             CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEE
T ss_pred             eeEEecCCCCCceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE-CCeEEEeeccccccccCceEEEE
Confidence            45665532   235778888999999999999865443211     111111 122 33444443      248899999


Q ss_pred             cCCCceeee-ecC-------------------------------------CccE-EEEEEeCCCCEEEEEEC--------
Q psy11885         85 FNTQTETVI-GTH-------------------------------------DQPI-RAVEYSDEVNCILTGSW--------  117 (327)
Q Consensus        85 ~~~~~~~~~-~~h-------------------------------------~~~V-~~l~~~~~~~~l~sgs~--------  117 (327)
                      +++++.... ...                                     ...+ ....+.++.++++.+..        
T Consensus       189 a~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~  268 (596)
T d1w6sa_         189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET  268 (596)
T ss_dssp             TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred             CCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccc
Confidence            998876431 100                                     0111 23456677777766533        


Q ss_pred             --------CCeEEEEeCCCCceeeeeeCC----------CcEEEE---ecCCC---eEEEEeCCCeEEEEECCCCccc
Q psy11885        118 --------DTSVKMWDPRSSRCVGNYTQP----------DKVFTM---SLCGE---KFVVGTAGRKVCIWDLRNMGYI  171 (327)
Q Consensus       118 --------d~~i~lwdl~~~~~~~~~~~~----------~~~~~~---~~~~~---~~~~~~~d~~v~iwD~~~~~~~  171 (327)
                              ...|...|+++++..+.++..          .....+   ..+++   .++....+|.+.++|-++++.+
T Consensus       269 ~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i  346 (596)
T d1w6sa_         269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (596)
T ss_dssp             GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCcee
Confidence                    245778999999988766531          111111   22343   3666788899999998888754

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.57  E-value=4  Score=35.61  Aligned_cols=78  Identities=18%  Similarity=0.258  Sum_probs=51.7

Q ss_pred             ecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcc-eEEEEECCCCC-EEEEEEccccccCCCC-------C-CCCCCc
Q psy11885        244 HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG-ITSLCFSYDGN-VLAIACSYNYELETPP-------D-PIPPNN  313 (327)
Q Consensus       244 spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~-v~~l~fspdg~-~la~~~~~~~~~~~~~-------~-~~~~~~  313 (327)
                      +..+..+++|+.||.++-+|..+|+.+.++...... -.-+.|..||+ |+|+.++.+..+...+       . ...-+.
T Consensus       494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ag~g~~~~~~~g~~~~~~~~~~~g~~  573 (582)
T d1flga_         494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGS  573 (582)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCTHHHHHHTTCCCCCE
T ss_pred             EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCCccccccccccccccccCCCCE
Confidence            345667888999999999999999999877532211 12268888995 7777766544333211       1 135578


Q ss_pred             EEEEEccc
Q psy11885        314 IFIRHVTD  321 (327)
Q Consensus       314 ~~~~~~~~  321 (327)
                      ||+|.|-+
T Consensus       574 l~vF~Lp~  581 (582)
T d1flga_         574 FWVFKLPS  581 (582)
T ss_dssp             EEEEECCC
T ss_pred             EEEEeCCC
Confidence            88887743

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.30  E-value=2.5  Score=32.71  Aligned_cols=154  Identities=6%  Similarity=-0.016  Sum_probs=92.2

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC-CCceeeEEE-eCCceEEEEec-CCcEEEE--EcCCCce
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH-SDPVLDCCF-QDAVHSFSGGL-DCTLKMF--DFNTQTE   90 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h-~~~v~~~~~-~~~~~~~sgs~-Dg~i~vw--d~~~~~~   90 (327)
                      ..+..|++...++.+..+-...+.|.+.++........... -..+..+++ +....++-... .+..+++  +++....
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            56889999875555555555678999999876654333332 245677777 44555553322 2333444  4544433


Q ss_pred             eeee-cCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEe-CCCeEEEEECCC
Q psy11885         91 TVIG-THDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGT-AGRKVCIWDLRN  167 (327)
Q Consensus        91 ~~~~-~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~v~iwD~~~  167 (327)
                      ..+. ..-.....|++++.++.|+-+ ...++|...|+........+........++..++.+.... ..+.|...|..+
T Consensus       159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~  238 (263)
T d1npea_         159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI  238 (263)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEECCEEEEEECCCCEEEEEECCC
Confidence            3332 222456789999888877665 4578999999876544333333333445555566655543 556777778765


Q ss_pred             Cc
Q psy11885        168 MG  169 (327)
Q Consensus       168 ~~  169 (327)
                      ++
T Consensus       239 g~  240 (263)
T d1npea_         239 SK  240 (263)
T ss_dssp             TE
T ss_pred             Cc
Confidence            44

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.23  E-value=0.53  Score=41.57  Aligned_cols=73  Identities=19%  Similarity=0.196  Sum_probs=47.9

Q ss_pred             CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC----cEEEEecCCCe
Q psy11885         78 CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD----KVFTMSLCGEK  150 (327)
Q Consensus        78 g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~----~~~~~~~~~~~  150 (327)
                      |.+.-+|+.+++...-.....++..=..+..+.+++.|+.|+.++.+|.++|+.++++..+.    ..+.+..+|++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            55777777777654322222222211223456788899999999999999999999887543    23555667764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.75  E-value=0.46  Score=41.89  Aligned_cols=73  Identities=14%  Similarity=0.094  Sum_probs=47.5

Q ss_pred             CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC----cEEEEecCCCe
Q psy11885         78 CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD----KVFTMSLCGEK  150 (327)
Q Consensus        78 g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~----~~~~~~~~~~~  150 (327)
                      |.+.-||+.+++......+..+...=..+-.+.+++.|+.|+.++.+|.++|+.++++..+.    ..+.+..+|++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            45777888887765432222221111123356789999999999999999999999887543    23444556654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=88.51  E-value=2.5  Score=34.21  Aligned_cols=89  Identities=13%  Similarity=0.172  Sum_probs=55.1

Q ss_pred             EEEEEcCCCcee----eeecCCccEEEEEEeCCCCEEEEEECC-CeEEEEeCCCCceeeeee--CC--CcEEEEecCCCe
Q psy11885         80 LKMFDFNTQTET----VIGTHDQPIRAVEYSDEVNCILTGSWD-TSVKMWDPRSSRCVGNYT--QP--DKVFTMSLCGEK  150 (327)
Q Consensus        80 i~vwd~~~~~~~----~~~~h~~~V~~l~~~~~~~~l~sgs~d-~~i~lwdl~~~~~~~~~~--~~--~~~~~~~~~~~~  150 (327)
                      +.+||..++.-.    ....|.......++.++++.++.|+.+ .++.+||..+......-.  .+  ....++..++..
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v  133 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV  133 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCce
Confidence            668998876432    122233333456778999998888765 689999998766432211  11  123444556777


Q ss_pred             EEEEeCC------CeEEEEECCCC
Q psy11885        151 FVVGTAG------RKVCIWDLRNM  168 (327)
Q Consensus       151 ~~~~~~d------~~v~iwD~~~~  168 (327)
                      ++.++.+      +.+.+||..+.
T Consensus       134 ~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         134 FTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eeeccccccccccceeeeecCCCC
Confidence            7776542      36899998754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.72  E-value=5.7  Score=31.87  Aligned_cols=150  Identities=13%  Similarity=0.144  Sum_probs=78.0

Q ss_pred             eEEEEecCCCcEEEEEEC------------CCcEEEEECCCCeE--EE-Eec--C----CCceeeEEE---eCCc-eEEE
Q psy11885         19 TAVKFAPNSNQFLLASSW------------DCNVSLYDITNNNL--RL-KYA--H----SDPVLDCCF---QDAV-HSFS   73 (327)
Q Consensus        19 ~~i~fs~~~~~~l~s~~~------------d~~i~iwd~~~~~~--~~-~~~--h----~~~v~~~~~---~~~~-~~~s   73 (327)
                      -.|+..|+ +..+++++.            .|.|.++|+.+.+.  .. ...  .    .-....+.+   .++. +++.
T Consensus        38 EDi~~~~d-g~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          38 EDLEILPN-GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CEEEECTT-SEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             ceEEECCC-CcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            36888885 455554432            38899999876531  11 111  1    012233433   1232 3444


Q ss_pred             E---ecCCcEEEEEcCCCce--eeee----cCCccEEEEEEeCCCCEEEEEE--C---------------CCeEEEEeCC
Q psy11885         74 G---GLDCTLKMFDFNTQTE--TVIG----THDQPIRAVEYSDEVNCILTGS--W---------------DTSVKMWDPR  127 (327)
Q Consensus        74 g---s~Dg~i~vwd~~~~~~--~~~~----~h~~~V~~l~~~~~~~~l~sgs--~---------------d~~i~lwdl~  127 (327)
                      .   ....+|-+|++.....  ....    ......++|....++..++|-.  .               -+.+.-||..
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            3   2456788887764332  1111    1223568888888888777731  1               1223334433


Q ss_pred             CCceeeeeeCCCcEEEEecCCCeEEEE-eCCCeEEEEECCCCc
Q psy11885        128 SSRCVGNYTQPDKVFTMSLCGEKFVVG-TAGRKVCIWDLRNMG  169 (327)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~v~iwD~~~~~  169 (327)
                      ..+.+..-..-..-++++++++.++++ +..+.|++|++...+
T Consensus       197 ~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         197 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            222221111122345677777776655 567889999987543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=82.71  E-value=10  Score=30.32  Aligned_cols=60  Identities=10%  Similarity=0.109  Sum_probs=37.4

Q ss_pred             EeeEEEEecCCCeEEEe-cCCCeEEEEeCCCceeeee--cCcCCcceEEEEECC-CCCEEEEEE
Q psy11885        237 PVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQ--FHRYDTGITSLCFSY-DGNVLAIAC  296 (327)
Q Consensus       237 ~v~~v~~spd~~~lasg-s~dg~i~iWd~~~~~~~~~--~~~~~~~v~~l~fsp-dg~~la~~~  296 (327)
                      ..|.|+++||+++|.++ +..+.|++|++.....+..  ........-.+.+.+ +|.+.+.+.
T Consensus       207 ~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         207 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            36889999999887655 4568899998764332221  111233456788876 455555443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.61  E-value=9.4  Score=29.18  Aligned_cols=153  Identities=8%  Similarity=-0.075  Sum_probs=92.5

Q ss_pred             CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEEe--cCCcEEEEEcCCCcee
Q psy11885         16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGG--LDCTLKMFDFNTQTET   91 (327)
Q Consensus        16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs--~Dg~i~vwd~~~~~~~   91 (327)
                      ..+..|++.+.++.+..+-...+.|.+.++.+....... ........+++. ....++-..  ..+.|...+++.....
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            457789998866666666566789999999876643333 333456677764 344555332  3345666666654443


Q ss_pred             eee-cCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCCCceeeeeeC---CCcEEEEecCCCeEEEEe-CCCeEEEEEC
Q psy11885         92 VIG-THDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRSSRCVGNYTQ---PDKVFTMSLCGEKFVVGT-AGRKVCIWDL  165 (327)
Q Consensus        92 ~~~-~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~d~~v~iwD~  165 (327)
                      .+. ..-.....+++++.++.|+-+ ...++|...|+...........   ......++..++.+.... .++.|...+.
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~  236 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR  236 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEEC
Confidence            333 333456889999888777765 5578999999865443222221   223455555566655543 5567776666


Q ss_pred             CCC
Q psy11885        166 RNM  168 (327)
Q Consensus       166 ~~~  168 (327)
                      .++
T Consensus       237 ~~g  239 (266)
T d1ijqa1         237 LTG  239 (266)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            544