Psyllid ID: psy11919

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
MLGTNLRASILFINMGFPLSPILSSTCEESPSFEVFWSVRLRILHITRSSKTLNYKAKGSIKSFKLGLVAGFSSEVSSKSSKTLNYKAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLPVYSNLASCKLRSATHYQVDLTDISHWRRSSRNSSVKCLYQDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNEKDLLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQATDVETNFSNNMLSKVMYCSGKAN
ccccccccEEEEEEcccccccccccccccccccEEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHcccccccccccccccccccEEEEcccccHHHHHHHHHHHHccccccccccEEEcccccHHHHHHHHHHccccccEEEcccccccccEEEEcccccccccEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccEEEEEcHHHHHHHHHcccccccEEEEcccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccc
cccccHHHHHHHHHccccccccccccccccccEEEEEEEEEEEEEEEcccHcccHHHHHHHHHHHHcccccccccccccccccccHHHcccHHHcccccccccEEEEccHHccccccEEEccccccEccccHHHHcccHcccccccEEEEEEccHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHEEEcccccccEEEEEEcccccEEEEEEEEcccccccHHHccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHccccccccccccccccccHHHHHccccccccccHHHHHHHcccccEEEEEcccccccccHHHccHcccEEEccccccccHHHHHHccccEccccEEEEccccccHHHHHHHHHHHHHHHHHcccccccEEcccccccccEEEcccccEEEEccccccHHHHcHHHHHHHHHHHcccccc
MLGTNLRASILFInmgfplspilsstceespsfeVFWSVRLRILHITrssktlnykakgsiksfkLGLVAGFssevsskssktlnykaggciksfklgLVAGFSsevsskvyglrptiyrsilpkvvltadwrqylpvysnlascklrsathyqvdltdishwrrssrnssvkclYQDYLVNRfgslggaaksvwlpfqcrnlekygnekDLLAVAVVKkdskvqnfedlrglkschsgymdssgwvapVYHLLEKglikndvcpyykgveqffsggscvpgleekeksespslekICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLcskggrapvskaadcnlgvvpphmvvtsnsksnmEIDIIKHAIITAADLFSKKPEIFKLFgsfmgkpdvlflnpatgveslpdqatdvetNFSNNMLSKVMYCSGKAN
MLGTNLRASILFINMGFPLSPILSSTCEESPSFEVFWSVRLRILHItrssktlnykakgsiksfKLGLVAGFSSevsskssktlnYKAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLPVYSNLASCKLRSATHYQVdltdishwrrssrnssvKCLYQDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNEKDLLAVAVvkkdskvqnfedlrglkSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQATDVETNFSNNMLSKVMYCSGKAN
MLGTNLRASILFINMGFPLSPILSSTCEESPSFEVFWSVRLRILHITRSSKTLNYKAKGSIKSFKLGLVAGFssevssksskTLNYKAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLPVYSNLASCKLRSATHYQVDLTDISHWRRSSRNSSVKCLYQDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNEKDLLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGleekeksespslekICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQATDVETNFSNNMLSKVMYCSGKAN
*****LRASILFINMGFPLSPILSSTCEESPSFEVFWSVRLRILHITRSSKTLNYKAKGSIKSFKLGLVAGFS*********TLNYKAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLPVYSNLASCKLRSATHYQVDLTDISHWRRSSRNSSVKCLYQDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNEKDLLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVP*************EKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGV******************************
*****LRASILFINMGFPLSPILSSTCEESPSFEVFWSVRLRILHITRSSKTLNY**********LG****************LNYKAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLPVYSNLASCKLRSATHYQVDLTDISHWRRSSRNSSVKCLYQDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNEKDLLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKE**ES*SLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQATDVETNFSNNMLSKV*YCS****
MLGTNLRASILFINMGFPLSPILSSTCEESPSFEVFWSVRLRILHITRSSKTLNYKAKGSIKSFKLGLVAGFS*********TLNYKAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLPVYSNLASCKLRSATHYQVDLTDISHWRRSSRNSSVKCLYQDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNEKDLLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGL**********LEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQATDVETNFSNNMLSKVMYCSGKAN
**GTNLRASILFINMGFPLSPILSSTCEESPSFEVFWSVRLRILHITRSSKTLNYKAKGSIKSFKLGLVAGFSSEVSSKSSKTLNYKAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLPVYSNLASCKLRSATHYQVDLTDISHWRRSSRNSSVKCLYQDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNEKDLLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQATDVETNFSNNMLSKVMYCS****
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iiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLGTNLRASILFINMGFPLSPILSSTCEESPSFEVFWSVRLRILHITRSSKTLNYKAKGSIKSFKLGLVAGFSSEVSSKSSKTLNYKAGGCIKSFKLGLVAGFSSEVSSKVYGLRPTIYRSILPKVVLTADWRQYLPVYSNLASCKLRSATHYQVDLTDISHWRRSSRNSSVKCLYQDYLVNRFGSLGGAAKSVWLPFQCRNLEKYGNEKDLLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVESLPDQATDVETNFSNNMLSKVMYCSGKAN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query453 2.2.26 [Sep-21-2011]
Q02942726 Transferrin OS=Blaberus d N/A N/A 0.492 0.307 0.418 2e-48
P22297681 Transferrin OS=Manduca se N/A N/A 0.434 0.289 0.333 2e-25
P02788 710 Lactotransferrin OS=Homo yes N/A 0.584 0.373 0.321 1e-23
Q29477 708 Lactotransferrin OS=Capra N/A N/A 0.492 0.314 0.335 3e-21
Q9TUM0 708 Lactotransferrin OS=Camel N/A N/A 0.483 0.309 0.334 5e-21
Q921I1 697 Serotransferrin OS=Mus mu yes N/A 0.448 0.291 0.366 7e-21
P24627 708 Lactotransferrin OS=Bos t yes N/A 0.503 0.322 0.330 2e-20
P12346 698 Serotransferrin OS=Rattus yes N/A 0.450 0.292 0.355 2e-20
A5A6I6 698 Serotransferrin OS=Pan tr no N/A 0.461 0.299 0.364 3e-20
P02787 698 Serotransferrin OS=Homo s no N/A 0.461 0.299 0.364 3e-20
>sp|Q02942|TRF_BLADI Transferrin OS=Blaberus discoidalis PE=1 SV=1 Back     alignment and function desciption
 Score =  194 bits (492), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/253 (41%), Positives = 150/253 (59%), Gaps = 30/253 (11%)

Query: 204 EKYGNEKDLL-AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKND 262
           E+YG    L  AVAVV+KDS  Q+ EDLRG KSCH+GY  ++GW  P+Y LL K LI  +
Sbjct: 448 EQYGEHGSLYYAVAVVRKDSTYQSIEDLRGAKSCHTGYGRNAGWNVPLYTLLSKELISKN 507

Query: 263 VCPYYKGVEQFFSGGSCVPGLEEKEKS---ESP-SLEKIC-----------------HNI 301
            CPY   +  +FSGGSCVPG +  E +   ++P SL  IC                  N 
Sbjct: 508 SCPYSSALSSYFSGGSCVPGAQLPENNPANQNPDSLCSICAGNLDAPNNDPAWKCSASND 567

Query: 302 TTIFA-TNTLQCLKMGDADVAFTNQVKV-------NEAIEEGIFKVDEIEFLCSKGGRAP 353
            + F  +   +CL  G+  VAF     V       N+A      + ++ E LC+ GGRA 
Sbjct: 568 ESFFGYSGAFRCLASGEGQVAFVKHTTVPENTDGHNQAAWTAGLRSEDFELLCADGGRAS 627

Query: 354 VSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPD 413
           +++ + C+L  VPPHMVVTSN K++++++ I+HAI+ A DL+S++P++FKLFG F G  D
Sbjct: 628 INEYSRCHLAEVPPHMVVTSNDKTDIQLNEIRHAILAAGDLYSRRPDLFKLFGDFGGTKD 687

Query: 414 VLFLNPATGVESL 426
           +LF N ATG+ S+
Sbjct: 688 LLFKNSATGLLSV 700
Transferrins are iron binding transport proteins which bind Fe(3+) ion in association with the binding of an anion, usually bicarbonate.
Blaberus discoidalis (taxid: 6981)
>sp|P22297|TRF_MANSE Transferrin OS=Manduca sexta PE=1 SV=1 Back     alignment and function description
>sp|P02788|TRFL_HUMAN Lactotransferrin OS=Homo sapiens GN=LTF PE=1 SV=6 Back     alignment and function description
>sp|Q29477|TRFL_CAPHI Lactotransferrin OS=Capra hircus GN=LTF PE=1 SV=1 Back     alignment and function description
>sp|Q9TUM0|TRFL_CAMDR Lactotransferrin OS=Camelus dromedarius GN=LTF PE=1 SV=1 Back     alignment and function description
>sp|Q921I1|TRFE_MOUSE Serotransferrin OS=Mus musculus GN=Tf PE=1 SV=1 Back     alignment and function description
>sp|P24627|TRFL_BOVIN Lactotransferrin OS=Bos taurus GN=LTF PE=1 SV=2 Back     alignment and function description
>sp|P12346|TRFE_RAT Serotransferrin OS=Rattus norvegicus GN=Tf PE=1 SV=3 Back     alignment and function description
>sp|A5A6I6|TRFE_PANTR Serotransferrin OS=Pan troglodytes GN=TF PE=2 SV=1 Back     alignment and function description
>sp|P02787|TRFE_HUMAN Serotransferrin OS=Homo sapiens GN=TF PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
22597202 728 transferrin [Mastotermes darwiniensis] 0.523 0.325 0.429 7e-51
549120 726 RecName: Full=Transferrin; Flags: Precur 0.492 0.307 0.418 1e-46
372292427 714 transferrin [Periplaneta americana] 0.534 0.338 0.408 7e-46
59939802 731 transferrin [Romalea microptera] 0.496 0.307 0.408 2e-42
189242039 708 PREDICTED: similar to transferrin [Tribo 0.543 0.347 0.358 5e-40
270015915 828 hypothetical protein TcasGA2_TC002069 [T 0.543 0.297 0.358 1e-39
113197153 721 transferrin [Protaetia brevitarsis] 0.516 0.324 0.361 3e-37
58294539 722 transferrin [Apriona germari] gi|8860502 0.507 0.318 0.374 1e-32
58585086 712 transferrin 1 precursor [Apis mellifera] 0.470 0.299 0.374 3e-30
357575252 712 transferrin [Apis cerana cerana] 0.470 0.299 0.374 6e-30
>gi|22597202|gb|AAN03488.1| transferrin [Mastotermes darwiniensis] Back     alignment and taxonomy information
 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 116/270 (42%), Positives = 152/270 (56%), Gaps = 33/270 (12%)

Query: 204 EKYGNEKDLL-AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKND 262
           EKYG    L  +VAVVKK S  ++ +DLRG KSCH+GY  ++GW  P+Y LL KGLI  +
Sbjct: 448 EKYGEHGALYYSVAVVKKSSTYRSIDDLRGAKSCHTGYGRTAGWNVPLYTLLHKGLISRN 507

Query: 263 VCPYYKGVEQFFSGGSCVPGL---EEKEKSESPS-LEKIC-------------------- 298
            CPY + + +FFSGGSCVPG+   E     ++P  L  IC                    
Sbjct: 508 SCPYTRALSEFFSGGSCVPGVLAPENNPSEDAPEKLYSICAGNLDSSDIPAAEASRCSAS 567

Query: 299 HNITTIFATNTLQCLKMGDADVAFTNQVKVNE-------AIEEGIFKVDEIEFLCSKGGR 351
           +N +    T   +CL  G  DVAF     V E       A      K ++ E LC  GGR
Sbjct: 568 NNESYFGYTGAFRCLASGSGDVAFVKHTTVPENTDGRNVATWAAALKSEDFELLCPGGGR 627

Query: 352 APVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGK 411
           APV +  DC+L  VPPHMVVTSN KS   +D I+HAI+ A DL+SK+P++F+LFG F G 
Sbjct: 628 APVDRYEDCHLAQVPPHMVVTSNGKSQNALDEIRHAILAAGDLYSKRPDLFRLFGDFDGT 687

Query: 412 PDVLFLNPATGVESLPDQATDVETNFSNNM 441
            D+LF N ATG+ S+ D  + +   +SN M
Sbjct: 688 KDLLFKNSATGLSSV-DAGSPLMQQYSNIM 716

Source: Mastotermes darwiniensis

Species: Mastotermes darwiniensis

Genus: Mastotermes

Family: Mastotermitidae

Order: Isoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|549120|sp|Q02942.1|TRF_BLADI RecName: Full=Transferrin; Flags: Precursor gi|155950|gb|AAA27820.1| transferrin [Blaberus discoidalis] Back     alignment and taxonomy information
>gi|372292427|gb|AEX92027.1| transferrin [Periplaneta americana] Back     alignment and taxonomy information
>gi|59939802|gb|AAQ62963.2| transferrin [Romalea microptera] Back     alignment and taxonomy information
>gi|189242039|ref|XP_001808066.1| PREDICTED: similar to transferrin [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270015915|gb|EFA12363.1| hypothetical protein TcasGA2_TC002069 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|113197153|gb|ABI31834.1| transferrin [Protaetia brevitarsis] Back     alignment and taxonomy information
>gi|58294539|gb|AAW70172.1| transferrin [Apriona germari] gi|88605021|gb|ABD46825.1| transferrin [Apriona germari] Back     alignment and taxonomy information
>gi|58585086|ref|NP_001011572.1| transferrin 1 precursor [Apis mellifera] gi|28403764|gb|AAO39761.1| transferrin [Apis mellifera] gi|33303620|gb|AAQ02339.1| transferrin [Apis mellifera] gi|33303622|gb|AAQ02340.1| transferrin [Apis mellifera] Back     alignment and taxonomy information
>gi|357575252|gb|AET85185.1| transferrin [Apis cerana cerana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
MGI|MGI:98821 697 Trf "transferrin" [Mus musculu 0.492 0.319 0.347 2.5e-20
UNIPROTKB|E7EQB2 696 LTF "Kaliocin-1" [Homo sapiens 0.560 0.364 0.333 5.6e-20
UNIPROTKB|E7ER44 708 LTF "Kaliocin-1" [Homo sapiens 0.560 0.358 0.333 5.8e-20
UNIPROTKB|P02788 710 LTF "Lactotransferrin" [Homo s 0.560 0.357 0.333 5.9e-20
RGD|3845 698 Tf "transferrin" [Rattus norve 0.456 0.296 0.360 6.1e-19
UNIPROTKB|P02787 698 TF "Serotransferrin" [Homo sap 0.476 0.309 0.366 8e-19
UNIPROTKB|P24627 708 LTF "Lactotransferrin" [Bos ta 0.503 0.322 0.330 2.4e-18
RGD|1305445 709 Ltf "lactotransferrin" [Rattus 0.547 0.349 0.283 5.9e-16
MGI|MGI:1919025 700 1300017J02Rik "RIKEN cDNA 1300 0.514 0.332 0.308 1.2e-15
UNIPROTKB|F1PR54 708 LTF "Uncharacterized protein" 0.609 0.389 0.298 1.2e-15
MGI|MGI:98821 Trf "transferrin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 267 (99.0 bits), Expect = 2.5e-20, P = 2.5e-20
 Identities = 82/236 (34%), Positives = 112/236 (47%)

Query:   214 AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQF 273
             AVAVVKK +  Q    L G KSCH+G   S+GWV P+  L  K  +     P  K V  F
Sbjct:   116 AVAVVKKGTDFQ-LNQLEGKKSCHTGLGRSAGWVIPIGLLFCK--LSEPRSPLEKAVSSF 172

Query:   274 FSGGSCVPGXXXXXXXXXXXXXXICHNITT--IFA-TNTLQCLKMGDADVAFTNQVKVNE 330
             FSG SCVP                C   +T   F      +CLK G  DVAF     + E
Sbjct:   173 FSG-SCVPCADPVAFPKLCQLCPGCGCSSTQPFFGYVGAFKCLKDGGGDVAFVKHTTIFE 231

Query:   331 AIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIIT 390
              + E   + D+ E LC    R PV +  DC L  +P H VV    K+N + D+I   +  
Sbjct:   232 VLPEKADR-DQYELLCLDNTRKPVDQYEDCYLARIPSHAVVAR--KNNGKEDLIWEILKV 288

Query:   391 AADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVESLPDQATDVETNFSNNMLSKV 445
             A + F K K + F+LF S +GK D+LF + A G+  +P +  D      +N ++ +
Sbjct:   289 AQEHFGKGKSKDFQLFSSPLGK-DLLFKDSAFGLLRVPPRM-DYRLYLGHNYVTAI 342
GO:0005576 "extracellular region" evidence=IEA
GO:0005604 "basement membrane" evidence=ISO
GO:0005615 "extracellular space" evidence=ISO
GO:0005768 "endosome" evidence=IDA
GO:0005769 "early endosome" evidence=ISO
GO:0005770 "late endosome" evidence=ISO
GO:0005905 "coated pit" evidence=ISO;IDA
GO:0006810 "transport" evidence=IEA
GO:0006811 "ion transport" evidence=IEA
GO:0006826 "iron ion transport" evidence=IMP
GO:0006879 "cellular iron ion homeostasis" evidence=IEA
GO:0007015 "actin filament organization" evidence=IDA
GO:0007257 "activation of JUN kinase activity" evidence=IDA
GO:0008199 "ferric iron binding" evidence=ISO
GO:0009925 "basal plasma membrane" evidence=ISO
GO:0015091 "ferric iron transmembrane transporter activity" evidence=ISO
GO:0015682 "ferric iron transport" evidence=ISO
GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO
GO:0016324 "apical plasma membrane" evidence=ISO
GO:0030139 "endocytic vesicle" evidence=ISO;IDA
GO:0030316 "osteoclast differentiation" evidence=IDA
GO:0031643 "positive regulation of myelination" evidence=ISO
GO:0042327 "positive regulation of phosphorylation" evidence=IDA
GO:0044432 "endoplasmic reticulum part" evidence=ISO
GO:0045178 "basal part of cell" evidence=ISO
GO:0045780 "positive regulation of bone resorption" evidence=IDA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA
GO:0046872 "metal ion binding" evidence=IEA
GO:0048471 "perinuclear region of cytoplasm" evidence=ISO
GO:0055037 "recycling endosome" evidence=ISO;IDA
GO:0055072 "iron ion homeostasis" evidence=IEA
GO:0060395 "SMAD protein signal transduction" evidence=IDA
GO:0070371 "ERK1 and ERK2 cascade" evidence=IDA
GO:2000147 "positive regulation of cell motility" evidence=IDA
UNIPROTKB|E7EQB2 LTF "Kaliocin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7ER44 LTF "Kaliocin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P02788 LTF "Lactotransferrin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|3845 Tf "transferrin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P02787 TF "Serotransferrin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P24627 LTF "Lactotransferrin" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1305445 Ltf "lactotransferrin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1919025 1300017J02Rik "RIKEN cDNA 1300017J02 gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PR54 LTF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
smart00094332 smart00094, TR_FER, Transferrin 6e-48
pfam00405328 pfam00405, Transferrin, Transferrin 2e-33
pfam12974242 pfam12974, Phosphonate-bd, ABC transporter, phosph 6e-05
TIGR01098254 TIGR01098, 3A0109s03R, phosphate/phosphite/phospho 7e-04
>gnl|CDD|214514 smart00094, TR_FER, Transferrin Back     alignment and domain information 
 Score =  167 bits (424), Expect = 6e-48
 Identities = 83/258 (32%), Positives = 120/258 (46%), Gaps = 32/258 (12%)

Query: 199 QCRNL-----EKYGNEKD----LLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAP 249
           +  NL     E YG+E++      AVAVVKK S +  +  LRG KSCH+G   ++GW  P
Sbjct: 64  KPYNLVPVFAENYGSEEEPETGYYAVAVVKKGSAIFTWNQLRGKKSCHTGVGRTAGWNIP 123

Query: 250 VYHLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKIC-HNITTIFATN 308
           +  L  K +I+   CP+ K V +FFS  SC PG    +   + +L  +C  +     +++
Sbjct: 124 MGLLYNKLVIRPPNCPFEKAVSKFFS-ASCAPG--ADKPDPNSNLCALCAGDNKCACSSH 180

Query: 309 --------TLQCLKMGDADVAFTNQVKVNE-------AIEEGIFKVDEIEFLCSKGGRAP 353
                     +CL  G  DVAF     V E       A      K D+ E LC  G R P
Sbjct: 181 EPYYGYSGAFRCLAEGAGDVAFVKHSTVFENTDGKNGADWAKNLKRDDYELLCLDGTRKP 240

Query: 354 VSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKKPEIFKLFGSFMGKPD 413
           V++  +C+L  VP H VV    K    I  + +           KP +F+LFGS  GK D
Sbjct: 241 VTEYKNCHLARVPSHAVVARKDKKEDVIWELLN---QQQKFGKDKPSLFQLFGSPTGK-D 296

Query: 414 VLFLNPATGVESLPDQAT 431
           +LF + A  +  +P +  
Sbjct: 297 LLFKDSAKCLAKIPPKTD 314

Length = 332
>gnl|CDD|215903 pfam00405, Transferrin, Transferrin Back     alignment and domain information
>gnl|CDD|221878 pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein Back     alignment and domain information
>gnl|CDD|233271 TIGR01098, 3A0109s03R, phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 453
PF00405330 Transferrin: Transferrin; InterPro: IPR001156 Tran 100.0
smart00094332 TR_FER Transferrin. 100.0
COG3221299 PhnD ABC-type phosphate/phosphonate transport syst 99.25
PF12974243 Phosphonate-bd: ABC transporter, phosphonate, peri 98.91
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 97.99
TIGR03431288 PhnD phosphonate ABC transporter, periplasmic phos 97.74
TIGR01728288 SsuA_fam ABC transporter, substrate-binding protei 89.16
TIGR01729300 taurine_ABC_bnd taurine ABC transporter, periplasm 87.87
TIGR02122320 TRAP_TAXI TRAP transporter solute receptor, TAXI f 85.95
cd00134218 PBPb Bacterial periplasmic transport systems use m 84.56
PF09084216 NMT1: NMT1/THI5 like; InterPro: IPR015168 This ent 83.21
PRK11553314 alkanesulfonate transporter substrate-binding subu 81.8
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 81.27
PF03401274 TctC: Tripartite tricarboxylate transporter family 80.44
>PF00405 Transferrin: Transferrin; InterPro: IPR001156 Transferrins are eukaryotic iron-binding glycoproteins that control the level of free iron in biological fluids [] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-76  Score=599.69  Aligned_cols=298  Identities=35%  Similarity=0.537  Sum_probs=256.5

Q ss_pred             cccccccCccCchh--hhh-hhhhhccccCCCccceeeeccCCChhhhhh------hceeccCCCcccccc-cccccccc
Q psy11919        130 ADWRQYLPVYSNLA--SCK-LRSATHYQVDLTDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAA-KSVWLPFQ  199 (453)
Q Consensus       130 vrW~~~~CV~s~le--KC~-~~~a~~~~~~i~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~-k~~l~~~~  199 (453)
                      |||    ||+|+.|  ||+ |+.++....  .|  .+.||++.++.|||+      ||++++|++++|+|+ +.+.+  +
T Consensus         1 VRw----Cv~s~~E~~KC~~~~~~~~~~~--~~--~i~Cv~~~s~~dCm~~I~~g~AD~v~ld~~~~y~A~~~~~~L--~   70 (330)
T PF00405_consen    1 VRW----CVVSEAELKKCERMSKAFSSAG--RP--EISCVRATSREDCMRRIKKGEADAVTLDGGDVYIAGLRKYNL--K   70 (330)
T ss_dssp             EEE----EEESHHHHHHHHHHHHHHTHTS--ST--SEEEEEESSHHHHHHHHHTTSSSBEEEEHHHHHHHHSTTTTE--E
T ss_pred             CEE----eecChHHHHHHHHHHHHhhhcC--CC--CceeEeCCCHHHHHHHHhhccCCEEEeCchhhhhhhccccCC--E
Confidence            799    9999866  995 666655433  33  455799999999996      999999999999999 54443  7


Q ss_pred             cccccccCC---CCcE-EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCC--CCCCcccccccc
Q psy11919        200 CRNLEKYGN---EKDL-LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKN--DVCPYYKGVEQF  273 (453)
Q Consensus       200 pi~~E~y~~---~~~~-~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~--~~C~~~kavs~F  273 (453)
                      ||++|.|+.   .+.. |+||||||++. .+|+||||||+||||+++++||++||++|+++++|++  ..|++.+++++|
T Consensus        71 pi~~E~y~~~~~~~~~y~aVAVVkk~s~-~~l~~LrGkksCHtG~g~~aGW~~Pv~~L~~~~~i~~~~~~~~~~~avs~F  149 (330)
T PF00405_consen   71 PIAAEVYGSEEEPEASYYAVAVVKKSSN-ITLKDLRGKKSCHTGYGRTAGWNIPVGYLLEKGVIPWTGPDCDVEKAVSDF  149 (330)
T ss_dssp             EEEEEEESSSSSEESEEEEEEEEETTSS--SGGGGTTSEEEESSTTTTTTTHHHHHHHHHHHHCCSSSTTSSHHHHHHHH
T ss_pred             EeeeeeccccccccceeEEEEEEecCCC-cchhhhcCCCCCCcCcCCcccccccchhhhhcCcCCcccccchhhhHHhhh
Confidence            899999983   2234 99999999987 4799999999999999999999999999999999998  458889999999


Q ss_pred             CCCCCccCCCCcccCCCCccccccccCC----------cccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCce
Q psy11919        274 FSGGSCVPGLEEKEKSESPSLEKICHNI----------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEI  342 (453)
Q Consensus       274 Fs~~SC~PG~~~~~~n~~~nLC~lC~g~----------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~dy  342 (453)
                      |+ +||+||+...   .+++||++|.|.          ++|| |.||||||+||+||||||+|++|.+.... +...+||
T Consensus       150 F~-~sC~PGa~~~---~~~~LC~lC~g~~~~~C~~~~~e~y~G~~GAlrCL~eg~GDVAFv~~~tv~~~~~~-~~~~~dy  224 (330)
T PF00405_consen  150 FS-KSCVPGADKK---NYSNLCSLCKGDGESKCSCSSNEPYYGYEGALRCLVEGKGDVAFVKHTTVFENTDG-NNQADDY  224 (330)
T ss_dssp             SS-EEE-TTSSTT---TTSGGGTTSTSSTTSTTTSSTTSTTSHHHHHHHHHHTTSSSEEEEETTHHHHHSTS-SSHSGGE
T ss_pred             hc-Cccccccccc---cCCcccccccCCCCCcCCCCCcccCCCCCcceEEEecCCCcEEEEeccchhhhccc-ccccccE
Confidence            99 9999998653   579999999982          3799 99999999999999999999999986654 3346999


Q ss_pred             EEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcC-CCCcccccCCCCCCCCccccCCCC
Q psy11919        343 EFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSK-KPEIFKLFGSFMGKPDVLFLNPAT  421 (453)
Q Consensus       343 ~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~-~~~~F~LF~S~~~~kNLLF~DsT~  421 (453)
                      +||||||+|+|+++|++|||+++|||+||+|++.+  .+++|+++|.++|++||+ +.+.|+||+|+.+++||||+|+|+
T Consensus       225 ~lLCpdG~~~~v~~~~~C~l~~~p~~~vv~r~~~~--~~~~i~~~L~~~~~~fg~~~~~~f~lF~s~~~~~dllF~D~t~  302 (330)
T PF00405_consen  225 ELLCPDGTRAPVSNYKPCNLGKVPWHAVVTRSDTS--KKDEIYNLLLKAQQLFGSNKSDDFQLFGSFSYGKDLLFKDSTK  302 (330)
T ss_dssp             EEEETTSEEEEGGGGGGSSSEEEESEEEEEESSSS--GHHHHHHHHHHHHHHHSTTSTSSS-TTSSSTTSSSSSSBTTEE
T ss_pred             EEEcCCCCccCcCCCCceeeeEecCceEEEcCccc--cHHHHHHHHHHHHHhhhcccccccccccccCCCCccccccccc
Confidence            99999999999999999999999999999998765  357999999999999994 478899999999889999999999


Q ss_pred             ccccCCCC-ChHHHH--HHHHHHHhhcc
Q psy11919        422 GVESLPDQ-ATDVET--NFSNNMLSKVM  446 (453)
Q Consensus       422 ~L~~v~~~-~~~~y~--~y~~~~~~~i~  446 (453)
                      +|+.|++. +|+.|+  +|+. ++..++
T Consensus       303 ~L~~i~~~~~~~~~lg~~y~~-~~~~l~  329 (330)
T PF00405_consen  303 CLVPIPSSTDYQEYLGPDYYR-AMKSLR  329 (330)
T ss_dssp             EEEE-TTTSSHHHHHHHHHHH-HHHHHH
T ss_pred             eeEECCCCCCHHHhcCHHHHH-HHHHhc
Confidence            99999976 899996  7998 444443

The proteins have arisen by duplication of a domain, each duplicated domain binding one iron atom. Members of the family include blood serotransferrin (siderophilin); milk lactotransferrin (lactoferrin); egg white ovotransferrin (conalbumin); and membrane-associated melanotransferrin. Additional members of this family include inhibitor of carbonic anhydrase (ICA; mammals), major yolk protein (sea urchins), saxiphilin (frog), pacifastin (crayfish), and TTF-1 (algae). Most family members contain two transferrin-like domains of around 340 amino acids, the result of an ancient duplication event []. Each of the duplicated domains can be further divided into two subdomains that form a cleft inside of which the iron atom is bound in iron-transporting transferrin []. The iron-coordinating residues consist of an aspartic acid, two tyrosines and a histidine, as well as an arginine that coordinates a requisite anion. In addition to iron and anion liganding residues, the transferrin-like domain contains conserved cysteine residues involved in disulphide bond formation. Human lactoferrin is a serine peptidase belonging to MEROPS peptidase family S60, clan SR. It is found at high concentrations in all human secretions, where it plays a major role in mucosal defence. Lactoferrin cleaves IgA1 protease at an arginine-rich region defined by amino acids RRSRRSVR and digests Hap at a similar arginine-rich sequence (VRSRRAAR). Ser259 and Lys73 form a catalytic dyad, reminiscent of a number of bacterial serine proteases. ; GO: 0008199 ferric iron binding, 0006826 iron ion transport, 0006879 cellular iron ion homeostasis, 0005576 extracellular region; PDB: 1JNF_A 1TFD_A 1JW1_A 1DTZ_A 2J4U_X 1I6Q_A 1BIY_A 1CE2_A 1H76_A 1F9B_A ....
>smart00094 TR_FER Transferrin Back     alignment and domain information
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein Back     alignment and domain information
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family Back     alignment and domain information
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein Back     alignment and domain information
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins Back     alignment and domain information
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
1l5t_A332 Crystal Structure Of A Domain-Opened Mutant (R121d) 2e-23
1vfd_A330 Human Lactoferrin, N-Terminal Lobe Mutant With Arg 6e-23
1vfe_A333 Human Lactoferrin, N-terminal Lobe Mutant With Arg 1e-22
1dsn_A333 D60s N-Terminal Lobe Human Lactoferrin Length = 333 1e-22
1h43_A334 R210e N-Terminal Lobe Human Lactoferrin Length = 33 1e-22
2pms_A344 Crystal Structure Of The Complex Of Human Lactoferr 1e-22
1eh3_A334 R210k N-Terminal Lobe Human Lactoferrin Length = 33 1e-22
1h45_A334 R210g N-Terminal Lobe Human Lactoferrin Length = 33 2e-22
1lcf_A 691 Crystal Structure Of Copper-And Oxalate-Substituted 2e-22
1lfg_A 691 Structure Of Diferric Human Lactoferrin Length = 69 2e-22
1lfh_A 691 Molecular Replacement Solution Of The Structure Of 2e-22
1lct_A333 Structure Of The Recombinant N-Terminal Lobe Of Hum 2e-22
1n76_A 690 Crystal Structure Of Human Seminal Lactoferrin At 3 2e-22
2bjj_X 692 Structure Of Recombinant Human Lactoferrin Produced 2e-22
1cb6_A 691 Structure Of Human Apolactoferrin At 2.0 A Resoluti 2e-22
1b0l_A 691 Recombinant Human Diferric Lactoferrin Length = 691 2e-22
1fck_A 692 Structure Of Diceric Human Lactoferrin Length = 692 3e-22
1lfi_A 691 Metal Substitution In Transferrins: The Crystal Str 3e-22
1h44_A334 R210l N-Terminal Lobe Human Lactoferrin Length = 33 3e-22
1sqy_A 691 Structure Of Human Diferric Lactoferrin At 2.5a Res 4e-22
1hse_A334 H253m N Terminal Lobe Of Human Lactoferrin Length = 1e-21
1dtz_A 689 Structure Of Camel Apo-Lactoferrin Demonstrates Its 2e-20
1blf_A 689 Structure Of Diferric Bovine Lactoferrin At 2.8 Ang 3e-20
1d4n_A329 Human Serum Transferrin Length = 329 5e-20
1d3k_A329 Human Serum Transferrin Length = 329 5e-20
1fqf_A331 Crystal Structures Of Mutant (K296a) That Abolish T 6e-20
3v83_A698 The 2.1 Angstrom Crystal Structure Of Diferric Huma 6e-20
1n7w_A331 Crystal Structure Of Human Serum Transferrin, N-Lob 6e-20
1jw1_A 689 Crystallization And Structure Determination Of Goat 6e-20
1suv_C329 Structure Of Human Transferrin Receptor-transferrin 7e-20
2hav_A676 Apo-Human Serum Transferrin (Glycosylated) Length = 7e-20
1ryo_A327 Human Serum Transferrin, N-Lobe Bound With Oxalate 7e-20
3qyt_A679 Diferric Bound Human Serum Transferrin Length = 679 7e-20
4h0w_A679 Bismuth Bound Human Serum Transferrin Length = 679 7e-20
3fgs_A337 Crystal Structure Of G65rK206E DOUBLE MUTANT OF THE 7e-20
2hau_A676 Apo-Human Serum Transferrin (Non-Glycosylated) Leng 7e-20
1oqg_A337 Crystal Structure Of The D63e Mutant Of The N-Lobe 7e-20
3ve1_B679 The 2.9 Angstrom Crystal Structure Of Transferrin B 8e-20
1n7x_A331 Human Serum Transferrin, N-Lobe Y45e Mutant Length 8e-20
2o7u_B337 Crystal Structure Of K206eK296E MUTANT OF THE N-Ter 8e-20
1bp5_A337 Human Serum Transferrin, Recombinant N-Terminal Lob 8e-20
1n84_A331 Human Serum Transferrin, N-Lobe Length = 331 8e-20
2o84_X337 Crystal Structure Of K206e Mutant Of N-Lobe Human T 9e-20
3s9l_C693 Complex Between Transferrin Receptor 1 And Transfer 9e-20
1oqh_A337 Crystal Structure Of The R124a Mutant Of The N-lobe 1e-19
1fqe_A331 Crystal Structures Of Mutant (K206a) That Abolish T 1e-19
1b3e_A330 Human Serum Transferrin, N-Terminal Lobe, Expressed 2e-19
1jqf_A334 Human Transferrin N-Lobe Mutant H249q Length = 334 6e-19
1b1x_A 689 Structure Of Diferric Mare Lactoferrin At 2.62a Res 1e-18
1dtg_A334 Human Transferrin N-Lobe Mutant H249e Length = 334 1e-18
1biy_A 689 Structure Of Diferric Buffalo Lactoferrin Length = 3e-18
1ce2_A 689 Structure Of Diferric Buffalo Lactoferrin At 2.5a R 3e-18
3mc2_A 687 Crystal Structure Of The Murine Inhibitor Of Carbon 5e-17
1f9b_A 695 Melanin Protein Interaction: X-Ray Structure Of The 7e-17
1jnf_A 676 Rabbit Serum Transferrin At 2.6 A Resolution Length 1e-16
1h76_A 696 The Crystal Structure Of Diferric Porcine Serum Tra 2e-16
1tfd_A304 High-Resolution X-Ray Studies On Rabbit Serum Trans 1e-15
1nnt_A328 Structural Evidence For A Ph-Sensitive Di-Lysine Tr 2e-13
1iej_A332 Ovotransferrin, N-Terminal Lobe, Holo Form, At 1.65 2e-13
1gvc_A157 18kda N-Ii Domain Fragment Of Duck Ovotransferrin + 2e-13
1gv8_A159 18 Kda Fragment Of N-Ii Domain Of Duck Ovotransferr 2e-13
1n04_A 686 Diferric Chicken Serum Transferrin At 2.8 A Resolut 2e-13
1nft_A329 Ovotransferrin, N-Terminal Lobe, Iron Loaded Open F 3e-13
2d3i_A 686 Crystal Structure Of Aluminum-Bound Ovotransferrin 5e-13
1iq7_A345 Ovotransferrin, C-Terminal Lobe, Apo Form Length = 1e-12
1ovb_A159 The Mechanism Of Iron Uptake By Transferrins: The S 2e-12
1aov_A 686 Apo Duck Ovotransferrin Length = 686 3e-12
1lgb_C159 Interaction Of A Legume Lectin With The N2 Fragment 6e-12
1suv_E345 Structure Of Human Transferrin Receptor-transferrin 1e-10
3skp_A342 The Structure Of Apo-Human Transferrin C-Lobe With 4e-10
3v89_B343 The Crystal Structure Of Transferrin Binding Protei 4e-10
1nkx_A348 Crystal Structure Of A Proteolytically Generated Fu 8e-10
2b65_A345 Crystal Structure Of The Complex Of C-Lobe Of Bovin 9e-10
2p1s_A344 Crystal Structure Of The C-Terminal Lobe Of Bovine 9e-10
1sdx_A335 Crystal Structure Of The Zinc Saturated C-Terminal 9e-10
>pdb|1L5T|A Chain A, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The Human Lactoferrin N-Lobe Refined From A Merohedrally- Twinned Crystal Form. Length = 332 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 135/305 (44%), Gaps = 37/305 (12%)
Query: 154 QVDLTDISHWRRS------------SRNSSVKCLYQDYLVNRFGSL---GGAAKSVWL-P 197
           Q + T    W+R+             R+S ++C+ Q    NR  ++   GG      L P
Sbjct: 13  QPEATKCFQWQRNMRKVRGPPVSCIKRDSPIQCI-QAIAENRADAVTLDGGFIYEAGLAP 71
Query: 198 FQCRNL--EKYGNEKD----LLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVY 251
           ++ R +  E YG E+       AVAVVKK    Q   +L+GLKSCH+G  D++GW  P+ 
Sbjct: 72  YKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQ-LNELQGLKSCHTGLRDTAGWNVPIG 130
Query: 252 HLLEKGLIKNDVCPYYKGVEQFFSGGSCVPGXXXXXXXXXXXXXXICHNITTIFATN--- 308
            L           P    V +FFS  SCVPG                      F++    
Sbjct: 131 TLRPFLNWTGPPEPIEAAVARFFSA-SCVPGADKGQFPNLCRLCAGTGENKCAFSSQEPY 189
Query: 309 -----TLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLG 363
                  +CL+ G  DVAF  +  V E + +   + DE E LC    R PV K  DC+L 
Sbjct: 190 FSYSGAFKCLRDGAGDVAFIRESTVFEDLSDEAER-DEYELLCPDNTRKPVDKFKDCHLA 248
Query: 364 VVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATG 422
            VP H VV  +   N + D I + +  A + F K K   F+LFGS  G+ D+LF + A G
Sbjct: 249 RVPSHAVVARS--VNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIG 306
Query: 423 VESLP 427
              +P
Sbjct: 307 FSRVP 311
>pdb|1VFD|A Chain A, Human Lactoferrin, N-Terminal Lobe Mutant With Arg 121 Replaced By Glu (R121e) Length = 330 Back     alignment and structure
>pdb|1VFE|A Chain A, Human Lactoferrin, N-terminal Lobe Mutant With Arg 121 Replaced By Ser (r121s) Length = 333 Back     alignment and structure
>pdb|1DSN|A Chain A, D60s N-Terminal Lobe Human Lactoferrin Length = 333 Back     alignment and structure
>pdb|1H43|A Chain A, R210e N-Terminal Lobe Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|2PMS|A Chain A, Crystal Structure Of The Complex Of Human Lactoferrin N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal Surface Protein A Length = 344 Back     alignment and structure
>pdb|1EH3|A Chain A, R210k N-Terminal Lobe Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1H45|A Chain A, R210g N-Terminal Lobe Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1LCF|A Chain A, Crystal Structure Of Copper-And Oxalate-Substituted Human Lactoferrin At 2.0 Angstroms Resolution Length = 691 Back     alignment and structure
>pdb|1LFG|A Chain A, Structure Of Diferric Human Lactoferrin Length = 691 Back     alignment and structure
>pdb|1LFH|A Chain A, Molecular Replacement Solution Of The Structure Of Apolactoferrin, A Protein Displaying Large-Scale Conformational Change Length = 691 Back     alignment and structure
>pdb|1LCT|A Chain A, Structure Of The Recombinant N-Terminal Lobe Of Human Lactoferrin At 2.0 Angstroms Resolution Length = 333 Back     alignment and structure
>pdb|1N76|A Chain A, Crystal Structure Of Human Seminal Lactoferrin At 3.4 A Resolution Length = 690 Back     alignment and structure
>pdb|2BJJ|X Chain X, Structure Of Recombinant Human Lactoferrin Produced In The Milk Of Transgenic Cows Length = 692 Back     alignment and structure
>pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.0 A Resolution. Length = 691 Back     alignment and structure
>pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin Length = 691 Back     alignment and structure
>pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin Length = 692 Back     alignment and structure
>pdb|1LFI|A Chain A, Metal Substitution In Transferrins: The Crystal Structure Of Human Copper-lactoferrin At 2.1 Angstroms Resolution Length = 691 Back     alignment and structure
>pdb|1H44|A Chain A, R210l N-Terminal Lobe Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1SQY|A Chain A, Structure Of Human Diferric Lactoferrin At 2.5a Resolution Using Crystals Grown At Ph 6.5 Length = 691 Back     alignment and structure
>pdb|1HSE|A Chain A, H253m N Terminal Lobe Of Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1DTZ|A Chain A, Structure Of Camel Apo-Lactoferrin Demonstrates Its Dual Role In Sequestering And Transporting Ferric Ions Simultaneously:crystal Structure Of Camel Apo-Lactoferrin At 2.6a Resolution. Length = 689 Back     alignment and structure
>pdb|1BLF|A Chain A, Structure Of Diferric Bovine Lactoferrin At 2.8 Angstroms Resolution Length = 689 Back     alignment and structure
>pdb|1D4N|A Chain A, Human Serum Transferrin Length = 329 Back     alignment and structure
>pdb|1D3K|A Chain A, Human Serum Transferrin Length = 329 Back     alignment and structure
>pdb|1FQF|A Chain A, Crystal Structures Of Mutant (K296a) That Abolish The Dilysine Interaction In The N-Lobe Of Human Transferrin Length = 331 Back     alignment and structure
>pdb|3V83|A Chain A, The 2.1 Angstrom Crystal Structure Of Diferric Human Transferrin Length = 698 Back     alignment and structure
>pdb|1N7W|A Chain A, Crystal Structure Of Human Serum Transferrin, N-Lobe L66w Mutant Length = 331 Back     alignment and structure
>pdb|1JW1|A Chain A, Crystallization And Structure Determination Of Goat Lactoferrin At 4.0 Resolution: A New Form Of Packing In Lactoferrins With A High Solvent Content In Crystals Length = 689 Back     alignment and structure
>pdb|1SUV|C Chain C, Structure Of Human Transferrin Receptor-transferrin Complex Length = 329 Back     alignment and structure
>pdb|2HAV|A Chain A, Apo-Human Serum Transferrin (Glycosylated) Length = 676 Back     alignment and structure
>pdb|1RYO|A Chain A, Human Serum Transferrin, N-Lobe Bound With Oxalate Length = 327 Back     alignment and structure
>pdb|3QYT|A Chain A, Diferric Bound Human Serum Transferrin Length = 679 Back     alignment and structure
>pdb|4H0W|A Chain A, Bismuth Bound Human Serum Transferrin Length = 679 Back     alignment and structure
>pdb|3FGS|A Chain A, Crystal Structure Of G65rK206E DOUBLE MUTANT OF THE N-Lobe Human Transferrin Length = 337 Back     alignment and structure
>pdb|2HAU|A Chain A, Apo-Human Serum Transferrin (Non-Glycosylated) Length = 676 Back     alignment and structure
>pdb|1OQG|A Chain A, Crystal Structure Of The D63e Mutant Of The N-Lobe Human Transferrin Length = 337 Back     alignment and structure
>pdb|3VE1|B Chain B, The 2.9 Angstrom Crystal Structure Of Transferrin Binding Protein B (Tbpb) From Serogroup B M982 Neisseria Meningitidis In Complex With Human Transferrin Length = 679 Back     alignment and structure
>pdb|1N7X|A Chain A, Human Serum Transferrin, N-Lobe Y45e Mutant Length = 331 Back     alignment and structure
>pdb|2O7U|B Chain B, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal Half Molecule Of Human Transferrin Length = 337 Back     alignment and structure
>pdb|1BP5|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo Form Length = 337 Back     alignment and structure
>pdb|1N84|A Chain A, Human Serum Transferrin, N-Lobe Length = 331 Back     alignment and structure
>pdb|2O84|X Chain X, Crystal Structure Of K206e Mutant Of N-Lobe Human Transferrin Length = 337 Back     alignment and structure
>pdb|3S9L|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin With Iron In The N-Lobe, Cryocooled 2 Length = 693 Back     alignment and structure
>pdb|1OQH|A Chain A, Crystal Structure Of The R124a Mutant Of The N-lobe Human Transferrin Length = 337 Back     alignment and structure
>pdb|1FQE|A Chain A, Crystal Structures Of Mutant (K206a) That Abolish The Dilysine Interaction In The N-Lobe Of Human Transferrin Length = 331 Back     alignment and structure
>pdb|1B3E|A Chain A, Human Serum Transferrin, N-Terminal Lobe, Expressed In Pichia Pastoris Length = 330 Back     alignment and structure
>pdb|1JQF|A Chain A, Human Transferrin N-Lobe Mutant H249q Length = 334 Back     alignment and structure
>pdb|1B1X|A Chain A, Structure Of Diferric Mare Lactoferrin At 2.62a Resolution Length = 689 Back     alignment and structure
>pdb|1DTG|A Chain A, Human Transferrin N-Lobe Mutant H249e Length = 334 Back     alignment and structure
>pdb|1BIY|A Chain A, Structure Of Diferric Buffalo Lactoferrin Length = 689 Back     alignment and structure
>pdb|1CE2|A Chain A, Structure Of Diferric Buffalo Lactoferrin At 2.5a Resolution Length = 689 Back     alignment and structure
>pdb|3MC2|A Chain A, Crystal Structure Of The Murine Inhibitor Of Carbonic Anhydrase Length = 687 Back     alignment and structure
>pdb|1F9B|A Chain A, Melanin Protein Interaction: X-Ray Structure Of The Complex Of Mare Lactoferrin With Melanin Monomers Length = 695 Back     alignment and structure
>pdb|1JNF|A Chain A, Rabbit Serum Transferrin At 2.6 A Resolution Length = 676 Back     alignment and structure
>pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porcine Serum Transferrin Length = 696 Back     alignment and structure
>pdb|1TFD|A Chain A, High-Resolution X-Ray Studies On Rabbit Serum Transferrin: Preliminary Structure Analysis Of The N-Terminal Half- Molecule At 2.3 Angstroms Resolution Length = 304 Back     alignment and structure
>pdb|1NNT|A Chain A, Structural Evidence For A Ph-Sensitive Di-Lysine Trigger In The Hen Ovotransferrin N-Lobe: Implications For Transferrin Iron Release Length = 328 Back     alignment and structure
>pdb|1IEJ|A Chain A, Ovotransferrin, N-Terminal Lobe, Holo Form, At 1.65 A Resolution Length = 332 Back     alignment and structure
>pdb|1GVC|A Chain A, 18kda N-Ii Domain Fragment Of Duck Ovotransferrin + Nta Length = 157 Back     alignment and structure
>pdb|1GV8|A Chain A, 18 Kda Fragment Of N-Ii Domain Of Duck Ovotransferrin Length = 159 Back     alignment and structure
>pdb|1N04|A Chain A, Diferric Chicken Serum Transferrin At 2.8 A Resolution. Length = 686 Back     alignment and structure
>pdb|1NFT|A Chain A, Ovotransferrin, N-Terminal Lobe, Iron Loaded Open Form Length = 329 Back     alignment and structure
>pdb|2D3I|A Chain A, Crystal Structure Of Aluminum-Bound Ovotransferrin At 2.15 Angstrom Resolution Length = 686 Back     alignment and structure
>pdb|1IQ7|A Chain A, Ovotransferrin, C-Terminal Lobe, Apo Form Length = 345 Back     alignment and structure
>pdb|1OVB|A Chain A, The Mechanism Of Iron Uptake By Transferrins: The Structure Of An 18kd Nii-Domain Fragment At 2.3 Angstroms Resolution Length = 159 Back     alignment and structure
>pdb|1AOV|A Chain A, Apo Duck Ovotransferrin Length = 686 Back     alignment and structure
>pdb|1LGB|C Chain C, Interaction Of A Legume Lectin With The N2 Fragment Of Human Lactotransferrin Or With The Isolated Biantennary Glycopeptide: Role Of The Fucose Moiety Length = 159 Back     alignment and structure
>pdb|1SUV|E Chain E, Structure Of Human Transferrin Receptor-transferrin Complex Length = 345 Back     alignment and structure
>pdb|3SKP|A Chain A, The Structure Of Apo-Human Transferrin C-Lobe With Bound Sulfate Ions Length = 342 Back     alignment and structure
>pdb|3V89|B Chain B, The Crystal Structure Of Transferrin Binding Protein A (Tbpa) From Neisseria Meningitidis Serogroup B In Complex With The C-Lobe Of Human Transferrin Length = 343 Back     alignment and structure
>pdb|1NKX|A Chain A, Crystal Structure Of A Proteolytically Generated Functional Monoferric C-Lobe Of Bovine Lactoferrin At 1.9a Resolution Length = 348 Back     alignment and structure
>pdb|2B65|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Bovine Lactoferrin With Maltose At 1.5a Resolution Length = 345 Back     alignment and structure
>pdb|2P1S|A Chain A, Crystal Structure Of The C-Terminal Lobe Of Bovine Lactoferrin Complexed With O-Alpha-D-Glucopyranosyl-(1 3)-Alpha-D- Fructofuranosyl- (2 1)- Alpha-D-Glucopyranoside At 1.93 A Resolution Length = 344 Back     alignment and structure
>pdb|1SDX|A Chain A, Crystal Structure Of The Zinc Saturated C-Terminal Half Of Bovine Lactoferrin At 2.0 A Resolution Reveals Two Additional Zinc Binding Sites Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
1h45_A334 Lactoferrin; metal transport, iron transport, meta 2e-39
1iej_A332 Ovotransferrin; iron, metal binding protein; 1.65A 4e-37
1ryo_A327 Serotransferrin; iron transport, metal transport; 3e-35
1cb6_A 691 Protein (lactoferrin); iron transport, apolactofer 2e-32
1cb6_A691 Protein (lactoferrin); iron transport, apolactofer 4e-31
1blf_A 689 Lactoferrin; transferrin, iron-binding protein, ca 2e-31
1blf_A689 Lactoferrin; transferrin, iron-binding protein, ca 1e-29
3tod_A335 Lactotransferrin; C-LOBE, metal binding protein, 1 7e-31
3mc2_A687 Inhibitor of carbonic anhydrase; MICA, transferrin 7e-29
3mc2_A 687 Inhibitor of carbonic anhydrase; MICA, transferrin 7e-26
3v83_A 698 Serotransferrin; iron binding domain, iron carrier 3e-28
3v83_A698 Serotransferrin; iron binding domain, iron carrier 2e-27
3skp_A342 Serotransferrin; iron binding protein, transferrin 4e-28
2d3i_A 686 Ovotransferrin; aluminum, metal-binding, transport 2e-27
2d3i_A686 Ovotransferrin; aluminum, metal-binding, transport 1e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
3p7i_A321 PHND, subunit of alkylphosphonate ABC transporter; 3e-05
3n5l_A310 Binding protein component of ABC phosphonate TRAN; 2e-04
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A Length = 334 Back     alignment and structure
 Score =  144 bits (363), Expect = 2e-39
 Identities = 81/244 (33%), Positives = 113/244 (46%), Gaps = 24/244 (9%)

Query: 204 EKYGNEKDLL----AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLI 259
           E YG E+       AVAVVKK        +L+GLKSCH+G   ++GW  P+  L      
Sbjct: 81  EVYGTERQPRTHYYAVAVVKKGGSF-QLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLDW 139

Query: 260 KNDVCPYYKGVEQFFSGGSCVPGLEEKEKSESPSLEKICHNITTIFA-----------TN 308
                P    V +FFS  SCVPG ++ +    P+L ++C                   + 
Sbjct: 140 TGPPEPIEAAVARFFS-ASCVPGADKGQF---PNLCRLCAGTGENKCAFSSQEPYFSYSG 195

Query: 309 TLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPH 368
             +CL+ G  DVAF  +  V E + +   + DE E LC    R PV K  DC+L  VP H
Sbjct: 196 AFKCLRDGAGDVAFIGESTVFEDLSDEAER-DEYELLCPDNTRKPVDKFKDCHLARVPSH 254

Query: 369 MVVTSNSKSNMEIDIIKHAIITAADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVESLP 427
            VV      N + D I + +  A + F K K   F+LFGS  G+ D+LF + A G   +P
Sbjct: 255 AVVA--RSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVP 312

Query: 428 DQAT 431
            +  
Sbjct: 313 PRID 316
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A* Length = 332 Back     alignment and structure
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ... Length = 327 Back     alignment and structure
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Length = 691 Back     alignment and structure
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Length = 691 Back     alignment and structure
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Length = 689 Back     alignment and structure
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Length = 689 Back     alignment and structure
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* 2ds9_A* 2dsf_A* 2dvc_A* 2dwa_A* 2dwh_A* ... Length = 335 Back     alignment and structure
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Length = 687 Back     alignment and structure
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Length = 687 Back     alignment and structure
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A* Length = 698 Back     alignment and structure
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A* Length = 698 Back     alignment and structure
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E Length = 342 Back     alignment and structure
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Length = 686 Back     alignment and structure
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Length = 686 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A Length = 321 Back     alignment and structure
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Length = 310 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query453
3skp_A342 Serotransferrin; iron binding protein, transferrin 100.0
3tod_A335 Lactotransferrin; C-LOBE, metal binding protein, 1 100.0
1iej_A332 Ovotransferrin; iron, metal binding protein; 1.65A 100.0
3mc2_A687 Inhibitor of carbonic anhydrase; MICA, transferrin 100.0
3v83_A698 Serotransferrin; iron binding domain, iron carrier 100.0
1h45_A334 Lactoferrin; metal transport, iron transport, meta 100.0
3mc2_A 687 Inhibitor of carbonic anhydrase; MICA, transferrin 100.0
1cb6_A 691 Protein (lactoferrin); iron transport, apolactofer 100.0
2d3i_A 686 Ovotransferrin; aluminum, metal-binding, transport 100.0
3v83_A 698 Serotransferrin; iron binding domain, iron carrier 100.0
1ryo_A327 Serotransferrin; iron transport, metal transport; 100.0
1blf_A 689 Lactoferrin; transferrin, iron-binding protein, ca 100.0
2d3i_A686 Ovotransferrin; aluminum, metal-binding, transport 100.0
1blf_A689 Lactoferrin; transferrin, iron-binding protein, ca 100.0
1cb6_A691 Protein (lactoferrin); iron transport, apolactofer 100.0
3p7i_A321 PHND, subunit of alkylphosphonate ABC transporter; 97.75
3n5l_A310 Binding protein component of ABC phosphonate TRAN; 97.66
2j4u_S45 Lactotransferrin, lactoferrin; membrane protein/hy 97.58
3ksx_A324 Nitrate transport protein; SSUA, alkanesulfonate-b 90.17
1us5_A314 Putative GLUR0 ligand binding core; receptor, memb 89.59
2vha_A287 Periplasmic binding transport protein; periplasmic 89.49
4ddd_A327 Immunogenic protein; ssgcid, structural genomics, 89.42
2qpq_A301 Protein BUG27; alpha/beta domain, venus flytrap, t 89.12
2f5x_A312 BUGD; periplasmic binding protein, transport prote 87.07
3del_B242 Arginine binding protein; alpha and beta protein ( 87.06
2dvz_A314 BUGE, putative exported protein; periplamsic bindi 86.56
4eq9_A246 ABC transporter substrate-binding protein-amino A 86.0
3kzg_A237 Arginine 3RD transport system periplasmic binding 84.82
3un6_A341 Hypothetical protein saouhsc_00137; structural gen 84.8
3ix1_A302 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine 83.64
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 83.07
2yln_A283 Putative ABC transporter, periplasmic binding Pro 82.25
3qax_A268 Probable ABC transporter arginine-binding protein; 80.79
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 80.71
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E Back     alignment and structure
Probab=100.00  E-value=9.2e-76  Score=594.05  Aligned_cols=286  Identities=27%  Similarity=0.454  Sum_probs=250.4

Q ss_pred             cccccccccCccCchh--hhh-hhhhhccccCCCccceeeeccCCChhhhhh------hceeccCCCccccccccccccc
Q psy11919        128 LTADWRQYLPVYSNLA--SCK-LRSATHYQVDLTDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAAKSVWLPF  198 (453)
Q Consensus       128 ~tvrW~~~~CV~s~le--KC~-~~~a~~~~~~i~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~k~~l~~~  198 (453)
                      ++|||    ||+|+.|  ||+ |..++      .|  .+.||++.|..+||+      ||++++|++++|+|++..+   
T Consensus         3 ~~vrW----C~~s~~E~~KC~~~~~~~------~~--~v~Cv~a~s~~~Ci~~I~~g~AD~~~ld~~~vy~Ag~~~L---   67 (342)
T 3skp_A            3 KPVKW----CALSHHERLKCDEWSVNS------VG--KIECVSAETTEDCIAKIMNGEADAMSLDGGFVYIAGKCGL---   67 (342)
T ss_dssp             CSEEE----EECSHHHHHHHHHHHHHT------TT--SEEEEECSSHHHHHHHHHHTSCCBEEECHHHHHHHHHTTC---
T ss_pred             ceEEE----eeCCHHHHHHHHHHHHhc------CC--CeEEEeCCCHHHHHHHHHcCCCCEEEECchheEEeccCCc---
Confidence            57999    9999977  996 54433      22  456899999999996      9999999999999997743   


Q ss_pred             ccccccccCCCC-------c-EEEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccc
Q psy11919        199 QCRNLEKYGNEK-------D-LLAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGV  270 (453)
Q Consensus       199 ~pi~~E~y~~~~-------~-~~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kav  270 (453)
                      +||++|.|..+.       . +|+||||||++++.+|+||||||+||||+++++||++||+.|+++.    ..|    ++
T Consensus        68 ~Pv~~E~y~~~~~~~~~~~~~YyaVAVVkK~s~~~tl~dLrGKksCHtg~g~tAGW~iP~g~L~~~~----~~c----~~  139 (342)
T 3skp_A           68 VPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKI----NHC----RF  139 (342)
T ss_dssp             EEEEEEECSCCTTGGGSCCCCEEEEEEEETTCSSCCGGGCTTSEEEESCTTCTTTTHHHHHHSGGGC----STT----CG
T ss_pred             EEEEEEEeecCccccCCCcceEEEEEEEEcCCCCCCHHHcCCCCccCCCCCCccchhhHHHHHhhcc----CCC----CH
Confidence            789999997632       3 4999999998888999999999999999999999999999998763    235    67


Q ss_pred             cccCCCCCccCCCCcccCCCCccccccccCC----------cccc-ccchhhhhhcCCCcEEEEechhhHHH--------
Q psy11919        271 EQFFSGGSCVPGLEEKEKSESPSLEKICHNI----------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEA--------  331 (453)
Q Consensus       271 s~FFs~~SC~PG~~~~~~n~~~nLC~lC~g~----------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~--------  331 (453)
                      ++||+ +||+||+..     +++||+||.|+          ++|| |+||||||+|| ||||||+|+||.+.        
T Consensus       140 s~FFs-~sC~PG~~~-----~~~LC~lC~g~~~~~C~~~~~e~Y~Gy~GAfrCL~eg-GDVAFvkh~tV~~~~~g~~~~~  212 (342)
T 3skp_A          140 DEFFS-EGCAPGSKK-----DSSLCKLCMGSGLNLCEPNNKEGYYGYTGAFRCLVEK-GDVAFVKHQTVPQNTGGKNPDP  212 (342)
T ss_dssp             GGSSS-EEECTTSCT-----TSGGGTTCCCCGGGTTCSSTTSTTCHHHHHHHHHHHT-CSEEEEETTHHHHTSTTSSCST
T ss_pred             HHhhh-hcccCCCCC-----ccchhhhcCCCCCCCCCCCCCCcCcCCcchheeeccC-CcEEEEechhHHhhcCCCCchh
Confidence            99999 999999943     68999999983          3799 99999999999 99999999999985        


Q ss_pred             HhcCCCCCCceEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC----CCcccccCC
Q psy11919        332 IEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSKK----PEIFKLFGS  407 (453)
Q Consensus       332 ~~~~~~~~~dy~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~~----~~~F~LF~S  407 (453)
                      |+. +++++||+||||||+|+||++|++|||+++|||+||+|++..    +.|+++|.++|++||++    .+.|+||+|
T Consensus       213 wa~-~~~~~dyeLLC~dGtr~pv~~~~~C~la~vP~~aVv~r~~~~----~~i~~~L~~~q~~fg~~~~~~~~~F~lF~s  287 (342)
T 3skp_A          213 WAK-NLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKE----ACVHKILRQQQHLFGSNVTDCSGNFCLFRS  287 (342)
T ss_dssp             TTT-TCCGGGEEEECTTSCEEEGGGGGGSCSEEECCCEEEECGGGH----HHHHHHHHHHHHHHSTTCSCCSSSCCTTCC
T ss_pred             hhc-cCChhhEEEECCCCCcCCCCCCccceEEEccCCeEEecCchH----HHHHHHHHHHHHHhCcCCCCCCCCccccCC
Confidence            433 567899999999999999999999999999999999999743    58999999999999953    268999999


Q ss_pred             CCCCCCccccCCCCccccCCCC-ChHHH--HHHHHHHHhhcccCCCC
Q psy11919        408 FMGKPDVLFLNPATGVESLPDQ-ATDVE--TNFSNNMLSKVMYCSGK  451 (453)
Q Consensus       408 ~~~~kNLLF~DsT~~L~~v~~~-~~~~y--~~y~~~~~~~i~~C~~~  451 (453)
                      +.  +||||+|+|++|+.+++. +|+.|  .+|++ +++++++|+.+
T Consensus       288 ~~--kdLLFkDst~~L~~~~~~~~~~~~Lg~~y~~-~~~~l~~c~~~  331 (342)
T 3skp_A          288 ET--KDLLFRDDTVCLAKLHDRNTYEKYLGEEYVK-AVGNLRKCSTS  331 (342)
T ss_dssp             SS--SCSSSCTTCCEEEECSTTCSHHHHSCHHHHH-HHHHHHHHSCC
T ss_pred             CC--CCcceecCccCcccCCCCCCHHHHhhHHHHH-HHHHhhcCCcc
Confidence            75  999999999999999866 99999  58999 88899999765
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 4fim_A* 4fjp_A* 4for_A* 4g2z_A* 4grk_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* ... Back     alignment and structure
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A* Back     alignment and structure
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Back     alignment and structure
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A* Back     alignment and structure
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A Back     alignment and structure
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Back     alignment and structure
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Back     alignment and structure
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Back     alignment and structure
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A* Back     alignment and structure
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ... Back     alignment and structure
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Back     alignment and structure
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Back     alignment and structure
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Back     alignment and structure
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Back     alignment and structure
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A Back     alignment and structure
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Back     alignment and structure
>2j4u_S Lactotransferrin, lactoferrin; membrane protein/hydrolase, membrane protein/hydrolase complex, iron, OMPC, porin, complex, protease; 2.99A {Camelus dromedarius} Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A* Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis} Back     alignment and structure
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis} Back     alignment and structure
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I} Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis} Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 453
d1ce2a1333 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buf 3e-39
d1eh3a_324 c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [T 8e-38
d1ieja_329 c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gall 6e-35
d1ryoa_324 c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [T 5e-34
d1gv8a_159 c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhyn 7e-32
d1lgbc_159 c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [T 1e-30
d2b6da1344 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) 8e-29
d1h76a2346 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) 9e-27
d2hava1325 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctola 5e-26
d2d3ia2352 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gall 2e-24
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]} Length = 333 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Transferrin
domain: Lactoferrin
species: Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]

 Score =  142 bits (358), Expect = 3e-39
 Identities = 71/227 (31%), Positives = 100/227 (44%), Gaps = 14/227 (6%)

Query: 214 AVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQF 273
           AVAVVKK S     + L+G  SCH+G   S+GW  P+  L         + P    V +F
Sbjct: 94  AVAVVKKGSNF-QLDQLQGRNSCHTGLGRSAGWNIPMGILRPYLSWTESLEPLQGAVAKF 152

Query: 274 FSGGSCVPGLEEKEKSESPSLEKICHNITTIFATNT--------LQCLKMGDADVAFTNQ 325
           FS  SCVP ++ +       L K         +            +CL+ G  DVAF  +
Sbjct: 153 FS-ASCVPCVDRQAYPNLCQLCKGEGENQCACSPREPYFGYSGAFKCLQDGAGDVAFVKE 211

Query: 326 VKVNEAIEEGIFKVDEIEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIK 385
             V E +       D+ E LC    RAPV    +C+L  VP H VV      + + D+I 
Sbjct: 212 TTVFENL-PEKADRDQYELLCLNNTRAPVDAFKECHLAQVPSHAVVA--RSVDGKEDLIW 268

Query: 386 HAIITAADLFSKKPE-IFKLFGSFMGKPDVLFLNPATGVESLPDQAT 431
             +  A + F K     F+LFGS  G+ D+LF + A G   +P +  
Sbjct: 269 KLLSKAQEKFGKNKSGSFQLFGSPPGQRDLLFKDSALGFLRIPSKVD 315
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} Length = 324 Back     information, alignment and structure
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 329 Back     information, alignment and structure
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId: 9606]} Length = 324 Back     information, alignment and structure
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos) [TaxId: 8839]} Length = 159 Back     information, alignment and structure
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} Length = 159 Back     information, alignment and structure
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) [TaxId: 9913]} Length = 344 Back     information, alignment and structure
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId: 9823]} Length = 346 Back     information, alignment and structure
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 325 Back     information, alignment and structure
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 352 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query453
d1ce2a1333 Lactoferrin {Domestic water buffalo (Bubalus arnee 100.0
d1ieja_329 Ovotransferrin {Chicken (Gallus gallus) [TaxId: 90 100.0
d1ryoa_324 Transferrin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1eh3a_324 Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2hava1325 Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId 100.0
d2d3ia2352 Ovotransferrin {Chicken (Gallus gallus) [TaxId: 90 100.0
d2b6da1344 Lactoferrin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1h76a2346 Transferrin {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d1gv8a_159 Ovotransferrin {Duck (Anas platyrhynchos) [TaxId: 100.0
d1lgbc_159 Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Transferrin
domain: Lactoferrin
species: Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]

Probab=100.00  E-value=9.9e-76  Score=590.14  Aligned_cols=301  Identities=30%  Similarity=0.481  Sum_probs=262.0

Q ss_pred             ccccccccccCccCchh--hhh-hhhhhccccCCCccceeeeccCCChhhhhh------hceeccCCCcccccccc-ccc
Q psy11919        127 VLTADWRQYLPVYSNLA--SCK-LRSATHYQVDLTDISHWRRSSRNSSVKCLY------QDYLVNRFGSLGGAAKS-VWL  196 (453)
Q Consensus       127 ~~tvrW~~~~CV~s~le--KC~-~~~a~~~~~~i~pi~~~~CV~a~S~~dCl~------AD~~v~daed~~~A~k~-~l~  196 (453)
                      .++|||    ||+|+.|  ||+ |+.++. ..+. |  .+.||++.|+.+||+      ||+++++++++|+|++. +.+
T Consensus         3 ~~~vrw----C~~s~~E~~KC~~l~~a~~-~~~~-p--~v~CV~~~s~~~Ci~~I~~g~ADi~~ld~~~~y~A~~~~~~l   74 (333)
T d1ce2a1           3 RKNVRW----CTISQPEWLKCHRWQWRMK-KLGA-P--SITCVRRASVLECIRAITEKKADAVTLDGGMVFEAGRDPYKL   74 (333)
T ss_dssp             TSSEEE----EESSHHHHHHHHHHHHHHH-TTCC-S--CEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCE
T ss_pred             CCCEEE----EeCCHHHHHHHHHHHHHHH-hcCC-C--ceEEEeCCCHHHHHHHHHcCCCCEEEEChHHHHHhhhccCCC
Confidence            679999    9999877  996 544443 2233 3  345799999999996      99999999999999754 333


Q ss_pred             ccccccccccCCCC---cE-EEEEEEEcCCCCCCccccCCCCccCCCCCCCCcchHHHHHHHHcCccCCCCCCccccccc
Q psy11919        197 PFQCRNLEKYGNEK---DL-LAVAVVKKDSKVQNFEDLRGLKSCHSGYMDSSGWVAPVYHLLEKGLIKNDVCPYYKGVEQ  272 (453)
Q Consensus       197 ~~~pi~~E~y~~~~---~~-~aVAVVkk~s~~~sl~dLkGKKsCHtG~g~taGW~~Pv~~L~~~g~I~~~~C~~~kavs~  272 (453)
                        +||++|.|+.++   .+ ++|||||+++. .+|+||||||+||||+++++||++||++|+++++++...|+..+++++
T Consensus        75 --~pi~~E~y~~~~~~~~~Y~~VaVVkk~s~-~~l~dLkGKksChtg~~~taGw~~Pv~~L~~~~~~~~~~~~~~~~v~~  151 (333)
T d1ce2a1          75 --RPVAAEIYGTKESPQTHYYAVAVVKKGSN-FQLDQLQGRNSCHTGLGRSAGWNIPMGILRPYLSWTESLEPLQGAVAK  151 (333)
T ss_dssp             --EEEEEEEEECSSSEESEEEEEEEEETTCC-CCGGGCTTCEEEESCTTCTTTTHHHHHHTHHHHCCCTTTCCHHHHHHT
T ss_pred             --EEEEEeeeccCCCCCcEEEEEEEEecCCc-cchhhccCCceeecCCCCccccchhHHHHhhhcCCCcccCcHHHHHHH
Confidence              789999997533   34 99999999987 489999999999999999999999999999999999888899999999


Q ss_pred             cCCCCCccCCCCcccCCCCccccccccCC----------cccc-ccchhhhhhcCCCcEEEEechhhHHHHhcCCCCCCc
Q psy11919        273 FFSGGSCVPGLEEKEKSESPSLEKICHNI----------TTIF-ATNTLQCLKMGDADVAFTNQVKVNEAIEEGIFKVDE  341 (453)
Q Consensus       273 FFs~~SC~PG~~~~~~n~~~nLC~lC~g~----------d~Y~-~~GAlrCL~eG~GDVAFVk~~tV~~~~~~~~~~~~d  341 (453)
                      ||+ +||+||++...   |+|||+||.+.          ++|| |+||||||+||+||||||+|+||.+++.. ..+++|
T Consensus       152 FF~-~sC~Pg~~~~~---~~~LC~lC~g~~~~~c~~~~~~~Y~G~~GAlrCL~eg~GDVAFvk~~tv~~~~~~-~~~~~d  226 (333)
T d1ce2a1         152 FFS-ASCVPCVDRQA---YPNLCQLCKGEGENQCACSPREPYFGYSGAFKCLQDGAGDVAFVKETTVFENLPE-KADRDQ  226 (333)
T ss_dssp             TSS-EEECTTSCTTT---CGGGGTTCCCCGGGTTCSSTTSTTCSHHHHHHHHHTTSCSEEEEETTHHHHHCCS-HHHHTT
T ss_pred             hhh-cccccCccccc---CcchhccCCCCCCCCCCCCCCCCcccchhHHHHHHcCCCcEEEEecchHhhhccc-ccCCCC
Confidence            999 99999997764   68999999862          3799 99999999999999999999999997754 234689


Q ss_pred             eEEecCCCCCccCCCCcCCcccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcC-CCCcccccCCCCCCCCccccCCC
Q psy11919        342 IEFLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNMEIDIIKHAIITAADLFSK-KPEIFKLFGSFMGKPDVLFLNPA  420 (453)
Q Consensus       342 y~LLCpdGsr~pi~~~~~Cnl~~vP~~aVvtr~~~~~~~~~~I~~lL~~l~~lFG~-~~~~F~LF~S~~~~kNLLF~DsT  420 (453)
                      |+||||||+|+|+++|++|||+++|+|+||+|++...  ++.|+++|..+|++||+ ..+.|+||+|+.+++||||+|+|
T Consensus       227 y~lLC~dg~~~~~~~~~~C~~~~~P~~~vv~~~~~~~--~~~i~~~L~~~~~~fg~~~~~~f~lF~s~~g~~dllFkD~t  304 (333)
T d1ce2a1         227 YELLCLNNTRAPVDAFKECHLAQVPSHAVVARSVDGK--EDLIWKLLSKAQEKFGKNKSGSFQLFGSPPGQRDLLFKDSA  304 (333)
T ss_dssp             EEEECTTSCEEEGGGTTTSCSEEEECCEEEEESSSCC--HHHHHHHHHHHHHHHCTTSCSSSCTTCCCTTCCCCSSCTTC
T ss_pred             eeEECCCCCCcccccccccceeEeccceEEEcCCccc--HHHHHHHHHHHHHHhCCCCCCceeccCCCCCCCCcccccCc
Confidence            9999999999999999999999999999999997653  46899999999999994 56789999999988999999999


Q ss_pred             CccccCCCC-ChHHHH--HHHHHHHhhcc
Q psy11919        421 TGVESLPDQ-ATDVET--NFSNNMLSKVM  446 (453)
Q Consensus       421 ~~L~~v~~~-~~~~y~--~y~~~~~~~i~  446 (453)
                      ++|+.+++. +++.|+  +|+. +++.++
T Consensus       305 ~~l~~v~~~~~~~~~lG~~y~~-~~~~l~  332 (333)
T d1ce2a1         305 LGFLRIPSKVDSALYLGSRYLT-ALKNLR  332 (333)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHH-HHHHHH
T ss_pred             cCceECCCCCCHHHhccHHHHH-HHHHhc
Confidence            999999876 899995  6888 665554
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos) [TaxId: 8839]} Back     information, alignment and structure
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure