Psyllid ID: psy11925

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MKLLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLINVLGIDSNSTAVDNKKTLHPTQYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYTPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQATDVETNYSNNMLSKVHARYLFGLKSFNFYTLLGTAIPTNV
ccccccccccEEEcccccEEEEccccccHHHHHHHHHHHHHHHHccccccccHHHcccccccccccEEcccccccHHHHccccHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHcccccEEEEccHHHHHcccccccEEEEEEEEcccccEEEEEEEEcccccccHHHcccccccccccccccEEEHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEcHHHHHHHHccccccHHHHHHccccccccccccccccccccccccccccccccccccccEEcccEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
ccccHHcccccccEccccEEEEccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEccccccEEccccccHHHHHcHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHcccccEEEEcccHHHHccccccccEEEEEEEccccEEEEEEEEEcccccccHHHccccEEEEcccccccccHHHHHHcHHccccccccccHHHHHHHHHccccccccccccccccHHcHHHHccccccccccHHHHHHcccccEEEEEccHHHHcccccccHHHHHHHHcccccccHHHHccHcccEEEccccccccHHHHHHccccEccccEEEEccccccHHHHHHHHHHHHHHHHHcccccccEEcccccccccEEEEccccEEEEcccccccccccHHHHHHHHHcHHHHHHHHHHHHHHcccccccccc
mkllqsetpctwaarpwpgfvandrievntQDLTQLRNYISQLNKlgessgndwlinvlgidsnstavdnkktlhptqylqkanyEDVIgrvvkpikpirwcvsspegmskclafkdaafsrdirppfecnrekSSKVCLKLIADGAADVITLDATEAVLgrknlnlrpilkekygneKDLLAVAVVNKnskvksleelkglksCHTAYMRTTGWVAPVYNLLEkglikkdscpyykgvaefftggscvpgideeekdapaslekicpkatrvtytplqclksgdgdvAFIKQVKVNKAIEEGLFKTDEIEYLCskggrapvskagdYEIEYLCskggrapvskaadcnlgvvpphmvvtsnsksnveIDTIRHAILSAADLFSKKPEIFKLFgsfmgkpdvlflnpatgvevlpdqatdvetnysnnmLSKVHARYLFGLKSFNFYtllgtaiptnv
mkllqsetpctwaarpwpgfvANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLINVLGIDSNSTAVdnkktlhptqylqkanyedVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDAteavlgrknlnlrpilkekygnekdLLAVAVVnknskvksleelkglkscHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYTPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKggrapvskagDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQATDVETNYSNNMLSKVHARYLFGLKSFNFYTLLGTAIPTNV
MKLLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLINVLGIDSNSTAVDNKKTLHPTQYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLlavavvnknskvkslEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYTPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQATDVETNYSNNMLSKVHARYLFGLKSFNFYTLLGTAIPTNV
********PCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLINVLGIDSNSTAVDNKKTLHPTQYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGID*********LEKICPKATRVTYTPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQATDVETNYSNNMLSKVHARYLFGLKSFNFYTLLGTAI****
MKLLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRN***************WLINVLGIDSNSTAVDNKKTLHPTQYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYTPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD******E*FKLFGSFMGKPDVLFLNPATGVEVLPDQATDVETNYSNNMLSKVHARYLFGLKSFNFYTLLGTAIP***
MKLLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLINVLGIDSNSTAVDNKKTLHPTQYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYTPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQATDVETNYSNNMLSKVHARYLFGLKSFNFYTLLGTAIPTNV
MKLLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLINVLGIDSNSTAVDNKKTLHPTQYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYTPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQATDVETNYSNNMLSKVHARYLFGLKSFNFY***********
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MKLLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLINVLGIDSNSTAVDNKKTLHPTQYLQKANYEDVIGRVVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLLAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVTYTPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQATDVETNYSNNMLSKVHARYLFGLKSFNFYTLLGTAIPTNV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query458 2.2.26 [Sep-21-2011]
Q02942726 Transferrin OS=Blaberus d N/A N/A 0.829 0.523 0.418 2e-92
P22297681 Transferrin OS=Manduca se N/A N/A 0.803 0.540 0.330 2e-56
P08582 738 Melanotransferrin OS=Homo yes N/A 0.665 0.413 0.335 1e-35
O97490 736 Melanotransferrin OS=Oryc yes N/A 0.648 0.403 0.322 4e-33
Q9R0R1 738 Melanotransferrin OS=Mus yes N/A 0.685 0.425 0.299 1e-32
P12346 698 Serotransferrin OS=Rattus no N/A 0.624 0.409 0.332 3e-32
P02788 710 Lactotransferrin OS=Homo no N/A 0.631 0.407 0.343 4e-32
Q921I1 697 Serotransferrin OS=Mus mu no N/A 0.628 0.413 0.331 4e-31
P24627 708 Lactotransferrin OS=Bos t no N/A 0.687 0.444 0.325 1e-30
Q29477 708 Lactotransferrin OS=Capra N/A N/A 0.633 0.409 0.333 2e-30
>sp|Q02942|TRF_BLADI Transferrin OS=Blaberus discoidalis PE=1 SV=1 Back     alignment and function desciption
 Score =  339 bits (870), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/435 (41%), Positives = 252/435 (57%), Gaps = 55/435 (12%)

Query: 9   PCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLINVLGIDSNSTAV 68
           PC WAARPW G++AN  ++    D+  LR  IS  + +GE+   DWL  VL +++ +  +
Sbjct: 286 PCIWAARPWQGYMANHDLD---NDIADLRAKISLADTIGETENADWLSKVLDLNNKTIPI 342

Query: 69  DNKKTLHPTQYLQKANYEDVIGR-VVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPP 127
           DN+    P  YL KANY DVI R    P +P+R+CV+S   + KC   K AA+SRDIRP 
Sbjct: 343 DNQGPYSPENYLNKANYTDVIERDTGAPHRPVRFCVTSDAELEKCRVLKRAAYSRDIRPA 402

Query: 128 FECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLL-AVAV 186
           F+C RE     CL+ + D  ADVITLD  E  + ++  NL+PI+ E+YG    L  AVAV
Sbjct: 403 FDCVREAGLHECLRTVRDDGADVITLDGGEVFVAQRQYNLKPIVAEQYGEHGSLYYAVAV 462

Query: 187 VNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGG 246
           V K+S  +S+E+L+G KSCHT Y R  GW  P+Y LL K LI K+SCPY   ++ +F+GG
Sbjct: 463 VRKDSTYQSIEDLRGAKSCHTGYGRNAGWNVPLYTLLSKELISKNSCPYSSALSSYFSGG 522

Query: 247 SCVPGIDEEEKDA----PASLEKICP------------------KATRVTYT-PLQCLKS 283
           SCVPG    E +     P SL  IC                     +   Y+   +CL S
Sbjct: 523 SCVPGAQLPENNPANQNPDSLCSICAGNLDAPNNDPAWKCSASNDESFFGYSGAFRCLAS 582

Query: 284 GDGDVAFIKQVKV-------NKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSK 336
           G+G VAF+K   V       N+A      ++++ E LC+ GGRA ++       EY    
Sbjct: 583 GEGQVAFVKHTTVPENTDGHNQAAWTAGLRSEDFELLCADGGRASIN-------EY---- 631

Query: 337 GGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSF 396
                    + C+L  VPPHMVVTSN K++++++ IRHAIL+A DL+S++P++FKLFG F
Sbjct: 632 ---------SRCHLAEVPPHMVVTSNDKTDIQLNEIRHAILAAGDLYSRRPDLFKLFGDF 682

Query: 397 MGKPDVLFLNPATGV 411
            G  D+LF N ATG+
Sbjct: 683 GGTKDLLFKNSATGL 697
Transferrins are iron binding transport proteins which bind Fe(3+) ion in association with the binding of an anion, usually bicarbonate.
Blaberus discoidalis (taxid: 6981)
>sp|P22297|TRF_MANSE Transferrin OS=Manduca sexta PE=1 SV=1 Back     alignment and function description
>sp|P08582|TRFM_HUMAN Melanotransferrin OS=Homo sapiens GN=MFI2 PE=1 SV=2 Back     alignment and function description
>sp|O97490|TRFM_RABIT Melanotransferrin OS=Oryctolagus cuniculus GN=Mfi2 PE=2 SV=1 Back     alignment and function description
>sp|Q9R0R1|TRFM_MOUSE Melanotransferrin OS=Mus musculus GN=Mfi2 PE=2 SV=1 Back     alignment and function description
>sp|P12346|TRFE_RAT Serotransferrin OS=Rattus norvegicus GN=Tf PE=1 SV=3 Back     alignment and function description
>sp|P02788|TRFL_HUMAN Lactotransferrin OS=Homo sapiens GN=LTF PE=1 SV=6 Back     alignment and function description
>sp|Q921I1|TRFE_MOUSE Serotransferrin OS=Mus musculus GN=Tf PE=1 SV=1 Back     alignment and function description
>sp|P24627|TRFL_BOVIN Lactotransferrin OS=Bos taurus GN=LTF PE=1 SV=2 Back     alignment and function description
>sp|Q29477|TRFL_CAPHI Lactotransferrin OS=Capra hircus GN=LTF PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
22597202 728 transferrin [Mastotermes darwiniensis] 0.882 0.554 0.455 1e-101
372292427 714 transferrin [Periplaneta americana] 0.860 0.551 0.419 5e-92
549120 726 RecName: Full=Transferrin; Flags: Precur 0.829 0.523 0.418 2e-90
59939802 731 transferrin [Romalea microptera] 0.844 0.529 0.443 2e-88
189242039 708 PREDICTED: similar to transferrin [Tribo 0.873 0.564 0.417 2e-80
270015915 828 hypothetical protein TcasGA2_TC002069 [T 0.873 0.483 0.417 3e-80
113197153 721 transferrin [Protaetia brevitarsis] 0.858 0.545 0.390 1e-76
58294539 722 transferrin [Apriona germari] gi|8860502 0.879 0.558 0.396 7e-72
4105436 652 transferrin [Riptortus clavatus] 0.753 0.529 0.362 1e-62
156891049 657 transferrin [Rhodnius prolixus] 0.764 0.532 0.350 1e-59
>gi|22597202|gb|AAN03488.1| transferrin [Mastotermes darwiniensis] Back     alignment and taxonomy information
 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/448 (45%), Positives = 271/448 (60%), Gaps = 44/448 (9%)

Query: 9   PCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNKLGESSGNDWLINVLGIDSNSTAV 68
           PC WAARPW G++AN  ++    D+  LR  IS  N +GE+   DWL  VL +++N+ AV
Sbjct: 286 PCIWAARPWQGYMANGDLD---SDVADLRAQISLANNIGENEHADWLGKVLDLNNNTVAV 342

Query: 69  DNKKTLHPTQYLQKANYEDVIGR-VVKPIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPP 127
           DN+    P QYL KANY DVI R    P +P+R+CV+S   ++KC   K AAFSRDIRP 
Sbjct: 343 DNQGPYSPQQYLDKANYTDVIERDTGAPHRPVRFCVTSNTELAKCRILKQAAFSRDIRPA 402

Query: 128 FECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNEKDLL-AVAV 186
           F+C +E +   CLK + D  ADVITLD  E    ++  NL+PI+ EKYG    L  +VAV
Sbjct: 403 FDCVQETTLHDCLKTVRDDGADVITLDGGEVYTAQRQYNLKPIIAEKYGEHGALYYSVAV 462

Query: 187 VNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGG 246
           V K+S  +S+++L+G KSCHT Y RT GW  P+Y LL KGLI ++SCPY + ++EFF+GG
Sbjct: 463 VKKSSTYRSIDDLRGAKSCHTGYGRTAGWNVPLYTLLHKGLISRNSCPYTRALSEFFSGG 522

Query: 247 SCVPGI----DEEEKDAPASLEKICP-----------KATRVT---------YT-PLQCL 281
           SCVPG+    +   +DAP  L  IC            +A+R +         YT   +CL
Sbjct: 523 SCVPGVLAPENNPSEDAPEKLYSICAGNLDSSDIPAAEASRCSASNNESYFGYTGAFRCL 582

Query: 282 KSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAP 341
            SG GDVAF+K   V +  +     T            A   K+ D+E+  LC  GGRAP
Sbjct: 583 ASGSGDVAFVKHTTVPENTDGRNVAT-----------WAAALKSEDFEL--LCPGGGRAP 629

Query: 342 VSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKKPEIFKLFGSFMGKPD 401
           V +  DC+L  VPPHMVVTSN KS   +D IRHAIL+A DL+SK+P++F+LFG F G  D
Sbjct: 630 VDRYEDCHLAQVPPHMVVTSNGKSQNALDEIRHAILAAGDLYSKRPDLFRLFGDFDGTKD 689

Query: 402 VLFLNPATGVEVLPDQATDVETNYSNNM 429
           +LF N ATG+  + D  + +   YSN M
Sbjct: 690 LLFKNSATGLSSV-DAGSPLMQQYSNIM 716

Source: Mastotermes darwiniensis

Species: Mastotermes darwiniensis

Genus: Mastotermes

Family: Mastotermitidae

Order: Isoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|372292427|gb|AEX92027.1| transferrin [Periplaneta americana] Back     alignment and taxonomy information
>gi|549120|sp|Q02942.1|TRF_BLADI RecName: Full=Transferrin; Flags: Precursor gi|155950|gb|AAA27820.1| transferrin [Blaberus discoidalis] Back     alignment and taxonomy information
>gi|59939802|gb|AAQ62963.2| transferrin [Romalea microptera] Back     alignment and taxonomy information
>gi|189242039|ref|XP_001808066.1| PREDICTED: similar to transferrin [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270015915|gb|EFA12363.1| hypothetical protein TcasGA2_TC002069 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|113197153|gb|ABI31834.1| transferrin [Protaetia brevitarsis] Back     alignment and taxonomy information
>gi|58294539|gb|AAW70172.1| transferrin [Apriona germari] gi|88605021|gb|ABD46825.1| transferrin [Apriona germari] Back     alignment and taxonomy information
>gi|4105436|gb|AAD02419.1| transferrin [Riptortus clavatus] Back     alignment and taxonomy information
>gi|156891049|gb|ABU96701.1| transferrin [Rhodnius prolixus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
UNIPROTKB|P08582 738 MFI2 "Melanotransferrin" [Homo 0.650 0.403 0.326 1.6e-30
UNIPROTKB|K7GKK8345 K7GKK8 "Uncharacterized protei 0.648 0.860 0.328 1e-29
UNIPROTKB|F1SQX4 736 MFI2 "Uncharacterized protein" 0.648 0.403 0.328 8.8e-29
RGD|1308155 738 Mfi2 "antigen p97 (melanoma as 0.679 0.421 0.305 1.9e-28
UNIPROTKB|E7EQB2 696 LTF "Kaliocin-1" [Homo sapiens 0.637 0.419 0.331 1.7e-27
UNIPROTKB|E7ER44 708 LTF "Kaliocin-1" [Homo sapiens 0.637 0.412 0.331 1.8e-27
UNIPROTKB|P02788 710 LTF "Lactotransferrin" [Homo s 0.637 0.411 0.331 1.8e-27
UNIPROTKB|E1BG25 739 MFI2 "Uncharacterized protein" 0.648 0.401 0.325 2e-27
UNIPROTKB|P02787 698 TF "Serotransferrin" [Homo sap 0.486 0.319 0.329 2.5e-27
MGI|MGI:1353421 738 Mfi2 "antigen p97 (melanoma as 0.665 0.413 0.3 2.3e-26
UNIPROTKB|P08582 MFI2 "Melanotransferrin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 345 (126.5 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 108/331 (32%), Positives = 153/331 (46%)

Query:    99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEA 158
             +RWC +S     KC    +A     I+P   C R  S+  C++LIA   AD ITLD    
Sbjct:    23 VRWCATSDPEQHKCGNMSEAFREAGIQPSLLCVRGTSADHCVQLIAAQEADAITLDGGAI 82

Query:   159 VLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXXXXXX-EELKGLKSCHTAYMRTTGWVA 217
                 K   L+P++ E Y  E                   + LKG+KSCHT   RT GW  
Sbjct:    83 YEAGKEHGLKPVVGEVYDQEVGTSYYAVAVVRRSSHVTIDTLKGVKSCHTGINRTVGWNV 142

Query:   218 PVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKD--------APASLEKICPK 269
             PV  L+E G +    C   K V+++F GGSCVPG  E              +S E +C K
Sbjct:   143 PVGYLVESGRLSVMGCDVLKAVSDYF-GGSCVPGAGETSYSESLCRLCRGDSSGEGVCDK 201

Query:   270 ATRVTYTP----LQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKA 325
             +    Y       +CL  G GDVAF+K   V       L  TD  + L S  G+A +S+ 
Sbjct:   202 SPLERYYDYSGAFRCLAEGAGDVAFVKHSTV-------LENTDG-KTLPS-WGQALLSQ- 251

Query:   326 GDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSK 385
              D+E+  LC  G RA V++   C+L  VP H VV    +++ +   I   +     LFS 
Sbjct:   252 -DFEL--LCRDGSRADVTEWRQCHLARVPAHAVVV---RADTDGGLIFRLLNEGQRLFSH 305

Query:   386 KPEIFKLFGS-FMGKPDVLFLNPATGVEVLP 415
             +   F++F S   G+ D+LF +  +  E++P
Sbjct:   306 EGSSFQMFSSEAYGQKDLLFKDSTS--ELVP 334
GO:0005576 "extracellular region" evidence=IEA
GO:0006826 "iron ion transport" evidence=IEA
GO:0006879 "cellular iron ion homeostasis" evidence=IEA
GO:0008199 "ferric iron binding" evidence=IEA
GO:0031225 "anchored to membrane" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0005506 "iron ion binding" evidence=TAS
GO:0005887 "integral to plasma membrane" evidence=TAS
UNIPROTKB|K7GKK8 K7GKK8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQX4 MFI2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1308155 Mfi2 "antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E7EQB2 LTF "Kaliocin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7ER44 LTF "Kaliocin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P02788 LTF "Lactotransferrin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BG25 MFI2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P02787 TF "Serotransferrin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1353421 Mfi2 "antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
smart00094332 smart00094, TR_FER, Transferrin 9e-74
pfam00405328 pfam00405, Transferrin, Transferrin 6e-54
pfam12974242 pfam12974, Phosphonate-bd, ABC transporter, phosph 1e-08
COG3221299 COG3221, PhnD, ABC-type phosphate/phosphonate tran 5e-05
>gnl|CDD|214514 smart00094, TR_FER, Transferrin Back     alignment and domain information 
 Score =  234 bits (600), Expect = 9e-74
 Identities = 109/338 (32%), Positives = 157/338 (46%), Gaps = 41/338 (12%)

Query: 99  IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEA 158
           +RWC  S    SKC  +   +  RD  P  EC    S++ C+K I  G AD +TLD  + 
Sbjct: 1   VRWCAVSNAEKSKCDQWSVNSRGRD-VPALECVSASSTEECIKAIQKGEADAVTLDGGDV 59

Query: 159 VLGRKNLNLRPILKEKYGNEKD----LLAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTG 214
               K  NL P+  E YG+E++      AVAVV K S + +  +L+G KSCHT   RT G
Sbjct: 60  YTAGKPYNLVPVFAENYGSEEEPETGYYAVAVVKKGSAIFTWNQLRGKKSCHTGVGRTAG 119

Query: 215 WVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKATRVT 274
           W  P+  L  K +I+  +CP+ K V++FF   SC PG D  + D  ++L  +C    +  
Sbjct: 120 WNIPMGLLYNKLVIRPPNCPFEKAVSKFF-SASCAPGAD--KPDPNSNLCALCAGDNKCA 176

Query: 275 ---------YT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSK 324
                    Y+   +CL  G GDVAF+K   V +                   G+     
Sbjct: 177 CSSHEPYYGYSGAFRCLAEGAGDVAFVKHSTVFENT----------------DGKNGADW 220

Query: 325 AGDY---EIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAAD 381
           A +    + E LC  G R PV++  +C+L  VP H VV    K    I  + +       
Sbjct: 221 AKNLKRDDYELLCLDGTRKPVTEYKNCHLARVPSHAVVARKDKKEDVIWELLNQ---QQK 277

Query: 382 LFSKKPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
               KP +F+LFGS  GK D+LF + A  +  +P +  
Sbjct: 278 FGKDKPSLFQLFGSPTGK-DLLFKDSAKCLAKIPPKTD 314

Length = 332
>gnl|CDD|215903 pfam00405, Transferrin, Transferrin Back     alignment and domain information
>gnl|CDD|221878 pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein Back     alignment and domain information
>gnl|CDD|225762 COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 458
smart00094332 TR_FER Transferrin. 100.0
PF00405330 Transferrin: Transferrin; InterPro: IPR001156 Tran 100.0
COG3221299 PhnD ABC-type phosphate/phosphonate transport syst 99.77
PF12974243 Phosphonate-bd: ABC transporter, phosphonate, peri 99.53
smart00094332 TR_FER Transferrin. 99.17
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 99.12
PF00405330 Transferrin: Transferrin; InterPro: IPR001156 Tran 99.07
TIGR03431288 PhnD phosphonate ABC transporter, periplasmic phos 98.96
TIGR01729300 taurine_ABC_bnd taurine ABC transporter, periplasm 97.68
TIGR01728288 SsuA_fam ABC transporter, substrate-binding protei 97.6
PRK11480320 tauA taurine transporter substrate binding subunit 97.17
PRK11553314 alkanesulfonate transporter substrate-binding subu 97.15
PF09084216 NMT1: NMT1/THI5 like; InterPro: IPR015168 This ent 97.14
TIGR02122320 TRAP_TAXI TRAP transporter solute receptor, TAXI f 97.06
cd00134218 PBPb Bacterial periplasmic transport systems use m 96.9
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 96.71
COG2358321 Imp TRAP-type uncharacterized transport system, pe 95.34
TIGR03427328 ABC_peri_uca ABC transporter periplasmic binding p 95.19
COG0715335 TauA ABC-type nitrate/sulfonate/bicarbonate transp 94.56
PF13379252 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_ 94.35
PRK09495247 glnH glutamine ABC transporter periplasmic protein 93.53
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 92.82
PRK10859482 membrane-bound lytic transglycosylase F; Provision 91.77
PF03401274 TctC: Tripartite tricarboxylate transporter family 88.92
COG4521334 TauA ABC-type taurine transport system, periplasmi 88.81
PRK00489287 hisG ATP phosphoribosyltransferase; Reviewed 85.49
COG3181319 Uncharacterized protein conserved in bacteria [Fun 84.06
PRK11063271 metQ DL-methionine transporter substrate-binding s 82.66
cd08414197 PBP2_LTTR_aromatics_like The C-terminal substrate 81.96
PRK15010260 ABC transporter lysine/arginine/ornithine binding 81.73
TIGR00363258 lipoprotein, YaeC family. This family of putative 80.28
>smart00094 TR_FER Transferrin Back     alignment and domain information 
Probab=100.00  E-value=8.9e-85  Score=660.25  Aligned_cols=310  Identities=36%  Similarity=0.656  Sum_probs=280.9

Q ss_pred             eEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEeccCCCceEEEEEeecCC
Q psy11925         99 IRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRKNLNLRPILKEKYGNE  178 (458)
Q Consensus        99 vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~L~pil~E~y~~~  178 (458)
                      |||||+|+.|++||++|+.++.+. .+|+|+|+.++|+.+||++|++|+||++++|++++|+|++.++|+||++|.|+.+
T Consensus         1 vrwCv~s~~e~~KC~~~~~~~~~~-~~~~v~Cv~~~s~~~Ci~~I~~g~AD~a~ldg~~~y~A~~~~~l~pi~~E~~~~~   79 (332)
T smart00094        1 VRWCAVSNAEKSKCDQWSVNSRGR-DVPALECVSASSTEECIKAIQKGEADAVTLDGGDVYTAGKPYNLVPVFAENYGSE   79 (332)
T ss_pred             CEEecCCHHHHHHHHHHHHHHhhC-CCCceEEEEcCCHHHHHHHHHCCCCCEEEECcHHHHhhcccCCceEEEEEeeccC
Confidence            799999999999999999876443 3899999999999999999999999999999999999988899999999999753


Q ss_pred             c---ce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCc
Q psy11925        179 K---DL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDE  254 (458)
Q Consensus       179 ~---~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~  254 (458)
                      .   .. |+||||||+|++.+|+||||||+||||+++|+||++|++.|+++|+|+..+|+..++|++||+ +||+||++.
T Consensus        80 ~~~~~~Y~aVaVVkk~S~i~sl~dLkGKksChtg~~stsGw~iP~~~L~~~g~i~~~~~~~~~avs~fFs-~sC~PG~~~  158 (332)
T smart00094       80 EEPETGYYAVAVVKKGSAIFTWNQLRGKKSCHTGVGRTAGWNIPMGLLYNKLVIRPPNCPFEKAVSKFFS-ASCAPGADK  158 (332)
T ss_pred             CCCCceeEEEEEEECCCCCCCHHHhCCCceecCCCCCcchhHHHHHHHHHcCCCCCCCCcHHHHHHHHhh-ccccCCCCC
Confidence            2   24 999999999999999999999999999999999999999999999999999988889999998 999999976


Q ss_pred             cccCCCchhhhhCCCCCCC---------Chh-hhhhcccCCCcEEEEechhhhhhhhcccccccchhhhccCCCCCCCCC
Q psy11925        255 EEKDAPASLEKICPKATRV---------TYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSK  324 (458)
Q Consensus       255 ~~~~~~~~LC~lC~g~~~C---------Gy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~~wa~~~~  324 (458)
                      +  +++++||+||.|+++|         ||+ |||||+||+||||||||+||.++       ++|+    ++++|++++.
T Consensus       159 ~--~~~~~LC~lC~g~~~C~~~~~e~Y~Gy~GA~rCL~eg~GdVAFvk~~tv~~~-------~~~~----~~~~wa~~~~  225 (332)
T smart00094      159 P--DPNSNLCALCAGDNKCACSSHEPYYGYSGAFRCLAEGAGDVAFVKHSTVFEN-------TDGK----NGADWAKNLK  225 (332)
T ss_pred             C--CCchhhHhhcCCCCccCCCCCCcccCcchhheeeccCCccEEEEecccHHhh-------cCCC----CccccccccC
Confidence            5  3468999999998888         999 99999999999999999999998       7887    8899999999


Q ss_pred             CCCcccccccCCCCccccccCccccccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC-CccccccccCCCCCCcc
Q psy11925        325 AGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKK-PEIFKLFGSFMGKPDVL  403 (458)
Q Consensus       325 ~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~~~~~fg~~-~~~F~lF~s~~~~kdll  403 (458)
                      ++||+  ||||||+|+||++|++|||+++|+|+||+|++..    ..+++.|+..+++||++ .+.|+||+|+. +||||
T Consensus       226 ~~dy~--lLC~dg~r~pi~~~~~C~la~~P~~~vv~~~~~~----~~~~~~ll~~~~~~g~~~~~~f~lf~s~~-~kdLl  298 (332)
T smart00094      226 RDDYE--LLCLDGTRKPVTEYKNCHLARVPSHAVVARKDKK----EDVIWELLNQQQKFGKDKPSLFQLFGSPT-GKDLL  298 (332)
T ss_pred             ccceE--EECCCCCcCCCccCCcceeeeccCCeEEecccch----HHHHHHHHHHHHHhccCCCCccccccCCC-CCcce
Confidence            99999  9999999999999999999999999999999742    34566667777799876 57799999985 49999


Q ss_pred             ccCCCCcceeCC-CCCHHHHH--HHHHhhh
Q psy11925        404 FLNPATGVEVLP-DQATDVET--NYSNNML  430 (458)
Q Consensus       404 F~D~t~~l~~v~-~~~~~~~~--~y~~~~~  430 (458)
                      |+|+|++|+.|| ..+|+.|.  +|...+.
T Consensus       299 FkD~t~~l~~i~~~~~~~~~lg~~y~~~~~  328 (332)
T smart00094      299 FKDSAKCLAKIPPKTDYELYLGEEYVTAIQ  328 (332)
T ss_pred             eeccccchhhCCCCCchhhhcCHHHHHHHH
Confidence            999999999998 56898884  6766664

>PF00405 Transferrin: Transferrin; InterPro: IPR001156 Transferrins are eukaryotic iron-binding glycoproteins that control the level of free iron in biological fluids [] Back     alignment and domain information
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A Back     alignment and domain information
>smart00094 TR_FER Transferrin Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>PF00405 Transferrin: Transferrin; InterPro: IPR001156 Transferrins are eukaryotic iron-binding glycoproteins that control the level of free iron in biological fluids [] Back     alignment and domain information
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein Back     alignment and domain information
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein Back     alignment and domain information
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family Back     alignment and domain information
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional Back     alignment and domain information
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Back     alignment and domain information
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins Back     alignment and domain information
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only] Back     alignment and domain information
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region Back     alignment and domain information
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A Back     alignment and domain information
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information
>PRK10859 membrane-bound lytic transglycosylase F; Provisional Back     alignment and domain information
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth [] Back     alignment and domain information
>COG4521 TauA ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Back     alignment and domain information
>cd08414 PBP2_LTTR_aromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold Back     alignment and domain information
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional Back     alignment and domain information
>TIGR00363 lipoprotein, YaeC family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
1sqy_A 691 Structure Of Human Diferric Lactoferrin At 2.5a Res 5e-30
1lcf_A 691 Crystal Structure Of Copper-And Oxalate-Substituted 8e-30
1eh3_A334 R210k N-Terminal Lobe Human Lactoferrin Length = 33 8e-30
1lfg_A 691 Structure Of Diferric Human Lactoferrin Length = 69 9e-30
1lfh_A 691 Molecular Replacement Solution Of The Structure Of 9e-30
1lct_A333 Structure Of The Recombinant N-Terminal Lobe Of Hum 1e-29
2pms_A344 Crystal Structure Of The Complex Of Human Lactoferr 1e-29
1lfi_A 691 Metal Substitution In Transferrins: The Crystal Str 1e-29
1b0l_A 691 Recombinant Human Diferric Lactoferrin Length = 691 1e-29
1fck_A 692 Structure Of Diceric Human Lactoferrin Length = 692 1e-29
1cb6_A 691 Structure Of Human Apolactoferrin At 2.0 A Resoluti 1e-29
1n76_A 690 Crystal Structure Of Human Seminal Lactoferrin At 3 2e-29
2bjj_X 692 Structure Of Recombinant Human Lactoferrin Produced 2e-29
1h43_A334 R210e N-Terminal Lobe Human Lactoferrin Length = 33 2e-29
1h45_A334 R210g N-Terminal Lobe Human Lactoferrin Length = 33 4e-29
1h44_A334 R210l N-Terminal Lobe Human Lactoferrin Length = 33 4e-29
1dsn_A333 D60s N-Terminal Lobe Human Lactoferrin Length = 333 7e-29
1vfe_A333 Human Lactoferrin, N-terminal Lobe Mutant With Arg 8e-29
1vfd_A330 Human Lactoferrin, N-Terminal Lobe Mutant With Arg 8e-29
1l5t_A332 Crystal Structure Of A Domain-Opened Mutant (R121d) 1e-28
1hse_A334 H253m N Terminal Lobe Of Human Lactoferrin Length = 2e-28
1dtz_A 689 Structure Of Camel Apo-Lactoferrin Demonstrates Its 9e-28
1blf_A 689 Structure Of Diferric Bovine Lactoferrin At 2.8 Ang 1e-27
1jw1_A 689 Crystallization And Structure Determination Of Goat 1e-27
3s9l_C 693 Complex Between Transferrin Receptor 1 And Transfer 3e-27
1fqf_A331 Crystal Structures Of Mutant (K296a) That Abolish T 6e-27
1n7x_A331 Human Serum Transferrin, N-Lobe Y45e Mutant Length 6e-27
4h0w_A 679 Bismuth Bound Human Serum Transferrin Length = 679 8e-27
1n84_A331 Human Serum Transferrin, N-Lobe Length = 331 8e-27
1ryo_A327 Human Serum Transferrin, N-Lobe Bound With Oxalate 8e-27
3qyt_A 679 Diferric Bound Human Serum Transferrin Length = 679 8e-27
3v83_A 698 The 2.1 Angstrom Crystal Structure Of Diferric Huma 9e-27
3ve1_B 679 The 2.9 Angstrom Crystal Structure Of Transferrin B 9e-27
1bp5_A337 Human Serum Transferrin, Recombinant N-Terminal Lob 1e-26
1d4n_A329 Human Serum Transferrin Length = 329 2e-26
3fgs_A337 Crystal Structure Of G65rK206E DOUBLE MUTANT OF THE 2e-26
2hav_A 676 Apo-Human Serum Transferrin (Glycosylated) Length = 2e-26
2hau_A 676 Apo-Human Serum Transferrin (Non-Glycosylated) Leng 2e-26
2o7u_B337 Crystal Structure Of K206eK296E MUTANT OF THE N-Ter 2e-26
2o84_X337 Crystal Structure Of K206e Mutant Of N-Lobe Human T 3e-26
1suv_C329 Structure Of Human Transferrin Receptor-transferrin 3e-26
1n7w_A331 Crystal Structure Of Human Serum Transferrin, N-Lob 3e-26
1b3e_A330 Human Serum Transferrin, N-Terminal Lobe, Expressed 3e-26
1fqe_A331 Crystal Structures Of Mutant (K206a) That Abolish T 3e-26
1oqg_A337 Crystal Structure Of The D63e Mutant Of The N-Lobe 3e-26
1d3k_A329 Human Serum Transferrin Length = 329 5e-26
1b1x_A 689 Structure Of Diferric Mare Lactoferrin At 2.62a Res 6e-26
1oqh_A337 Crystal Structure Of The R124a Mutant Of The N-lobe 7e-26
1jqf_A334 Human Transferrin N-Lobe Mutant H249q Length = 334 8e-26
1jnf_A 676 Rabbit Serum Transferrin At 2.6 A Resolution Length 9e-26
1dtg_A334 Human Transferrin N-Lobe Mutant H249e Length = 334 1e-25
1ce2_A 689 Structure Of Diferric Buffalo Lactoferrin At 2.5a R 2e-25
1tfd_A304 High-Resolution X-Ray Studies On Rabbit Serum Trans 5e-25
1h76_A 696 The Crystal Structure Of Diferric Porcine Serum Tra 2e-24
1f9b_A 695 Melanin Protein Interaction: X-Ray Structure Of The 5e-24
3mc2_A687 Crystal Structure Of The Murine Inhibitor Of Carbon 1e-23
1biy_A 689 Structure Of Diferric Buffalo Lactoferrin Length = 1e-23
1nnt_A328 Structural Evidence For A Ph-Sensitive Di-Lysine Tr 2e-19
1iej_A332 Ovotransferrin, N-Terminal Lobe, Holo Form, At 1.65 2e-19
1n04_A 686 Diferric Chicken Serum Transferrin At 2.8 A Resolut 3e-19
1nft_A329 Ovotransferrin, N-Terminal Lobe, Iron Loaded Open F 9e-19
2d3i_A 686 Crystal Structure Of Aluminum-Bound Ovotransferrin 1e-18
1aov_A 686 Apo Duck Ovotransferrin Length = 686 3e-17
3v89_B343 The Crystal Structure Of Transferrin Binding Protei 4e-16
3skp_A342 The Structure Of Apo-Human Transferrin C-Lobe With 4e-16
1sdx_A335 Crystal Structure Of The Zinc Saturated C-Terminal 6e-15
1nkx_A348 Crystal Structure Of A Proteolytically Generated Fu 7e-15
2b65_A345 Crystal Structure Of The Complex Of C-Lobe Of Bovin 7e-15
2p1s_A344 Crystal Structure Of The C-Terminal Lobe Of Bovine 7e-15
1iq7_A345 Ovotransferrin, C-Terminal Lobe, Apo Form Length = 2e-13
1gv8_A159 18 Kda Fragment Of N-Ii Domain Of Duck Ovotransferr 6e-13
1gvc_A157 18kda N-Ii Domain Fragment Of Duck Ovotransferrin + 6e-13
1suv_E345 Structure Of Human Transferrin Receptor-transferrin 1e-12
1lgb_C159 Interaction Of A Legume Lectin With The N2 Fragment 2e-12
1ovb_A159 The Mechanism Of Iron Uptake By Transferrins: The S 8e-12
>pdb|1SQY|A Chain A, Structure Of Human Diferric Lactoferrin At 2.5a Resolution Using Crystals Grown At Ph 6.5 Length = 691 Back     alignment and structure 
Iteration: 1

 Score =  129 bits (323), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 152/337 (45%), Gaps = 47/337 (13%)
Query: 97  KPIRWC-VSSPEGMSKCLAFKDAAFSRDIR-PPFECNREKSSKVCLKLIADGAADVITLD 154
           + ++WC VS+PE  +KC  ++     R +R PP  C +  S   C++ IA+  AD +TLD
Sbjct: 4   RSVQWCTVSNPEA-TKCFQWQRNM--RRVRGPPVSCVKRDSPTQCIQAIAENRADAVTLD 60
Query: 155 AT---EAVLGRKNLNLRPILKEKYGNEKDLXXXXXXXXXXX---XXXXEELKGLKSCHTA 208
                EA  G     LRP+  E YG E+                     EL+GLKSCHT 
Sbjct: 61  GGFIYEA--GLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTG 118
Query: 209 YMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEE-----KDAPASL 263
             RT GW  P+  L           P    VA FF+  SCVPG D+ +     +    + 
Sbjct: 119 LRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFS-ASCVPGADKGQFPNLCRLCAGTG 177
Query: 264 EKICPKATRVTY----TPLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGR 319
           E  C  +++  Y       +CL+ G GDVAFI++  V + +      +DE E        
Sbjct: 178 ENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL------SDEAER------- 224
Query: 320 APVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSA 379
                    E E LC    R PV K  DC+L  VP H VV  +   N + D I + +  A
Sbjct: 225 --------DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS--VNGKEDAIWNLLRQA 274
Query: 380 ADLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLP 415
            + F K K   F+LFGS  G+ D+LF + A G   +P
Sbjct: 275 QEKFGKDKSPAFQLFGSPSGQKDLLFKDSAIGFSRVP 311
>pdb|1LCF|A Chain A, Crystal Structure Of Copper-And Oxalate-Substituted Human Lactoferrin At 2.0 Angstroms Resolution Length = 691 Back     alignment and structure
>pdb|1EH3|A Chain A, R210k N-Terminal Lobe Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1LFG|A Chain A, Structure Of Diferric Human Lactoferrin Length = 691 Back     alignment and structure
>pdb|1LFH|A Chain A, Molecular Replacement Solution Of The Structure Of Apolactoferrin, A Protein Displaying Large-Scale Conformational Change Length = 691 Back     alignment and structure
>pdb|1LCT|A Chain A, Structure Of The Recombinant N-Terminal Lobe Of Human Lactoferrin At 2.0 Angstroms Resolution Length = 333 Back     alignment and structure
>pdb|2PMS|A Chain A, Crystal Structure Of The Complex Of Human Lactoferrin N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal Surface Protein A Length = 344 Back     alignment and structure
>pdb|1LFI|A Chain A, Metal Substitution In Transferrins: The Crystal Structure Of Human Copper-lactoferrin At 2.1 Angstroms Resolution Length = 691 Back     alignment and structure
>pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin Length = 691 Back     alignment and structure
>pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin Length = 692 Back     alignment and structure
>pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.0 A Resolution. Length = 691 Back     alignment and structure
>pdb|1N76|A Chain A, Crystal Structure Of Human Seminal Lactoferrin At 3.4 A Resolution Length = 690 Back     alignment and structure
>pdb|2BJJ|X Chain X, Structure Of Recombinant Human Lactoferrin Produced In The Milk Of Transgenic Cows Length = 692 Back     alignment and structure
>pdb|1H43|A Chain A, R210e N-Terminal Lobe Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1H45|A Chain A, R210g N-Terminal Lobe Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1H44|A Chain A, R210l N-Terminal Lobe Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1DSN|A Chain A, D60s N-Terminal Lobe Human Lactoferrin Length = 333 Back     alignment and structure
>pdb|1VFE|A Chain A, Human Lactoferrin, N-terminal Lobe Mutant With Arg 121 Replaced By Ser (r121s) Length = 333 Back     alignment and structure
>pdb|1VFD|A Chain A, Human Lactoferrin, N-Terminal Lobe Mutant With Arg 121 Replaced By Glu (R121e) Length = 330 Back     alignment and structure
>pdb|1L5T|A Chain A, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The Human Lactoferrin N-Lobe Refined From A Merohedrally- Twinned Crystal Form. Length = 332 Back     alignment and structure
>pdb|1HSE|A Chain A, H253m N Terminal Lobe Of Human Lactoferrin Length = 334 Back     alignment and structure
>pdb|1DTZ|A Chain A, Structure Of Camel Apo-Lactoferrin Demonstrates Its Dual Role In Sequestering And Transporting Ferric Ions Simultaneously:crystal Structure Of Camel Apo-Lactoferrin At 2.6a Resolution. Length = 689 Back     alignment and structure
>pdb|1BLF|A Chain A, Structure Of Diferric Bovine Lactoferrin At 2.8 Angstroms Resolution Length = 689 Back     alignment and structure
>pdb|1JW1|A Chain A, Crystallization And Structure Determination Of Goat Lactoferrin At 4.0 Resolution: A New Form Of Packing In Lactoferrins With A High Solvent Content In Crystals Length = 689 Back     alignment and structure
>pdb|3S9L|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin With Iron In The N-Lobe, Cryocooled 2 Length = 693 Back     alignment and structure
>pdb|1FQF|A Chain A, Crystal Structures Of Mutant (K296a) That Abolish The Dilysine Interaction In The N-Lobe Of Human Transferrin Length = 331 Back     alignment and structure
>pdb|1N7X|A Chain A, Human Serum Transferrin, N-Lobe Y45e Mutant Length = 331 Back     alignment and structure
>pdb|4H0W|A Chain A, Bismuth Bound Human Serum Transferrin Length = 679 Back     alignment and structure
>pdb|1N84|A Chain A, Human Serum Transferrin, N-Lobe Length = 331 Back     alignment and structure
>pdb|1RYO|A Chain A, Human Serum Transferrin, N-Lobe Bound With Oxalate Length = 327 Back     alignment and structure
>pdb|3QYT|A Chain A, Diferric Bound Human Serum Transferrin Length = 679 Back     alignment and structure
>pdb|3V83|A Chain A, The 2.1 Angstrom Crystal Structure Of Diferric Human Transferrin Length = 698 Back     alignment and structure
>pdb|3VE1|B Chain B, The 2.9 Angstrom Crystal Structure Of Transferrin Binding Protein B (Tbpb) From Serogroup B M982 Neisseria Meningitidis In Complex With Human Transferrin Length = 679 Back     alignment and structure
>pdb|1BP5|A Chain A, Human Serum Transferrin, Recombinant N-Terminal Lobe, Apo Form Length = 337 Back     alignment and structure
>pdb|1D4N|A Chain A, Human Serum Transferrin Length = 329 Back     alignment and structure
>pdb|3FGS|A Chain A, Crystal Structure Of G65rK206E DOUBLE MUTANT OF THE N-Lobe Human Transferrin Length = 337 Back     alignment and structure
>pdb|2HAV|A Chain A, Apo-Human Serum Transferrin (Glycosylated) Length = 676 Back     alignment and structure
>pdb|2HAU|A Chain A, Apo-Human Serum Transferrin (Non-Glycosylated) Length = 676 Back     alignment and structure
>pdb|2O7U|B Chain B, Crystal Structure Of K206eK296E MUTANT OF THE N-Terminal Half Molecule Of Human Transferrin Length = 337 Back     alignment and structure
>pdb|2O84|X Chain X, Crystal Structure Of K206e Mutant Of N-Lobe Human Transferrin Length = 337 Back     alignment and structure
>pdb|1SUV|C Chain C, Structure Of Human Transferrin Receptor-transferrin Complex Length = 329 Back     alignment and structure
>pdb|1N7W|A Chain A, Crystal Structure Of Human Serum Transferrin, N-Lobe L66w Mutant Length = 331 Back     alignment and structure
>pdb|1B3E|A Chain A, Human Serum Transferrin, N-Terminal Lobe, Expressed In Pichia Pastoris Length = 330 Back     alignment and structure
>pdb|1FQE|A Chain A, Crystal Structures Of Mutant (K206a) That Abolish The Dilysine Interaction In The N-Lobe Of Human Transferrin Length = 331 Back     alignment and structure
>pdb|1OQG|A Chain A, Crystal Structure Of The D63e Mutant Of The N-Lobe Human Transferrin Length = 337 Back     alignment and structure
>pdb|1D3K|A Chain A, Human Serum Transferrin Length = 329 Back     alignment and structure
>pdb|1B1X|A Chain A, Structure Of Diferric Mare Lactoferrin At 2.62a Resolution Length = 689 Back     alignment and structure
>pdb|1OQH|A Chain A, Crystal Structure Of The R124a Mutant Of The N-lobe Human Transferrin Length = 337 Back     alignment and structure
>pdb|1JQF|A Chain A, Human Transferrin N-Lobe Mutant H249q Length = 334 Back     alignment and structure
>pdb|1JNF|A Chain A, Rabbit Serum Transferrin At 2.6 A Resolution Length = 676 Back     alignment and structure
>pdb|1DTG|A Chain A, Human Transferrin N-Lobe Mutant H249e Length = 334 Back     alignment and structure
>pdb|1CE2|A Chain A, Structure Of Diferric Buffalo Lactoferrin At 2.5a Resolution Length = 689 Back     alignment and structure
>pdb|1TFD|A Chain A, High-Resolution X-Ray Studies On Rabbit Serum Transferrin: Preliminary Structure Analysis Of The N-Terminal Half- Molecule At 2.3 Angstroms Resolution Length = 304 Back     alignment and structure
>pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porcine Serum Transferrin Length = 696 Back     alignment and structure
>pdb|1F9B|A Chain A, Melanin Protein Interaction: X-Ray Structure Of The Complex Of Mare Lactoferrin With Melanin Monomers Length = 695 Back     alignment and structure
>pdb|3MC2|A Chain A, Crystal Structure Of The Murine Inhibitor Of Carbonic Anhydrase Length = 687 Back     alignment and structure
>pdb|1BIY|A Chain A, Structure Of Diferric Buffalo Lactoferrin Length = 689 Back     alignment and structure
>pdb|1NNT|A Chain A, Structural Evidence For A Ph-Sensitive Di-Lysine Trigger In The Hen Ovotransferrin N-Lobe: Implications For Transferrin Iron Release Length = 328 Back     alignment and structure
>pdb|1IEJ|A Chain A, Ovotransferrin, N-Terminal Lobe, Holo Form, At 1.65 A Resolution Length = 332 Back     alignment and structure
>pdb|1N04|A Chain A, Diferric Chicken Serum Transferrin At 2.8 A Resolution. Length = 686 Back     alignment and structure
>pdb|1NFT|A Chain A, Ovotransferrin, N-Terminal Lobe, Iron Loaded Open Form Length = 329 Back     alignment and structure
>pdb|2D3I|A Chain A, Crystal Structure Of Aluminum-Bound Ovotransferrin At 2.15 Angstrom Resolution Length = 686 Back     alignment and structure
>pdb|1AOV|A Chain A, Apo Duck Ovotransferrin Length = 686 Back     alignment and structure
>pdb|3V89|B Chain B, The Crystal Structure Of Transferrin Binding Protein A (Tbpa) From Neisseria Meningitidis Serogroup B In Complex With The C-Lobe Of Human Transferrin Length = 343 Back     alignment and structure
>pdb|3SKP|A Chain A, The Structure Of Apo-Human Transferrin C-Lobe With Bound Sulfate Ions Length = 342 Back     alignment and structure
>pdb|1SDX|A Chain A, Crystal Structure Of The Zinc Saturated C-Terminal Half Of Bovine Lactoferrin At 2.0 A Resolution Reveals Two Additional Zinc Binding Sites Length = 335 Back     alignment and structure
>pdb|1NKX|A Chain A, Crystal Structure Of A Proteolytically Generated Functional Monoferric C-Lobe Of Bovine Lactoferrin At 1.9a Resolution Length = 348 Back     alignment and structure
>pdb|2B65|A Chain A, Crystal Structure Of The Complex Of C-Lobe Of Bovine Lactoferrin With Maltose At 1.5a Resolution Length = 345 Back     alignment and structure
>pdb|2P1S|A Chain A, Crystal Structure Of The C-Terminal Lobe Of Bovine Lactoferrin Complexed With O-Alpha-D-Glucopyranosyl-(1 3)-Alpha-D- Fructofuranosyl- (2 1)- Alpha-D-Glucopyranoside At 1.93 A Resolution Length = 344 Back     alignment and structure
>pdb|1IQ7|A Chain A, Ovotransferrin, C-Terminal Lobe, Apo Form Length = 345 Back     alignment and structure
>pdb|1GV8|A Chain A, 18 Kda Fragment Of N-Ii Domain Of Duck Ovotransferrin Length = 159 Back     alignment and structure
>pdb|1GVC|A Chain A, 18kda N-Ii Domain Fragment Of Duck Ovotransferrin + Nta Length = 157 Back     alignment and structure
>pdb|1SUV|E Chain E, Structure Of Human Transferrin Receptor-transferrin Complex Length = 345 Back     alignment and structure
>pdb|1LGB|C Chain C, Interaction Of A Legume Lectin With The N2 Fragment Of Human Lactotransferrin Or With The Isolated Biantennary Glycopeptide: Role Of The Fucose Moiety Length = 159 Back     alignment and structure
>pdb|1OVB|A Chain A, The Mechanism Of Iron Uptake By Transferrins: The Structure Of An 18kd Nii-Domain Fragment At 2.3 Angstroms Resolution Length = 159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
1h45_A334 Lactoferrin; metal transport, iron transport, meta 4e-62
1ryo_A327 Serotransferrin; iron transport, metal transport; 2e-60
1cb6_A691 Protein (lactoferrin); iron transport, apolactofer 1e-59
1cb6_A 691 Protein (lactoferrin); iron transport, apolactofer 3e-51
1iej_A332 Ovotransferrin; iron, metal binding protein; 1.65A 9e-59
1blf_A689 Lactoferrin; transferrin, iron-binding protein, ca 8e-57
1blf_A 689 Lactoferrin; transferrin, iron-binding protein, ca 3e-53
3v83_A698 Serotransferrin; iron binding domain, iron carrier 3e-53
3v83_A 698 Serotransferrin; iron binding domain, iron carrier 8e-49
3mc2_A687 Inhibitor of carbonic anhydrase; MICA, transferrin 4e-53
3mc2_A 687 Inhibitor of carbonic anhydrase; MICA, transferrin 1e-46
3tod_A335 Lactotransferrin; C-LOBE, metal binding protein, 1 5e-53
3skp_A342 Serotransferrin; iron binding protein, transferrin 2e-51
2d3i_A686 Ovotransferrin; aluminum, metal-binding, transport 9e-47
2d3i_A 686 Ovotransferrin; aluminum, metal-binding, transport 1e-46
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3p7i_A321 PHND, subunit of alkylphosphonate ABC transporter; 3e-05
3n5l_A310 Binding protein component of ABC phosphonate TRAN; 3e-04
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A Length = 334 Back     alignment and structure
 Score =  204 bits (519), Expect = 4e-62
 Identities = 106/340 (31%), Positives = 146/340 (42%), Gaps = 41/340 (12%)

Query: 95  PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
             + ++WC  S    +KC  ++     R   PP  C +  S   C++ IA+  AD +TLD
Sbjct: 3   RRRSVQWCAVSQPEATKCFQWQRN-MRRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLD 61

Query: 155 ATEAVL-GRKNLNLRPILKEKYGNEKDLL----AVAVVNKNSKVKSLEELKGLKSCHTAY 209
                  G     LRP+  E YG E+       AVAVV K      L EL+GLKSCHT  
Sbjct: 62  GGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSF-QLNELQGLKSCHTGL 120

Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKD-----APASLE 264
            RT GW  P+  L           P    VA FF   SCVPG D+ +          + E
Sbjct: 121 RRTAGWNVPIGTLRPFLDWTGPPEPIEAAVARFF-SASCVPGADKGQFPNLCRLCAGTGE 179

Query: 265 KICPKATRVTYT----PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
             C  +++  Y       +CL+ G GDVAFI +  V + + +   + +            
Sbjct: 180 NKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIGESTVFEDLSDEAERDEY----------- 228

Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
                     E LC    R PV K  DC+L  VP H VV      N + D I + +  A 
Sbjct: 229 ----------ELLCPDNTRKPVDKFKDCHLARVPSHAVVA--RSVNGKEDAIWNLLRQAQ 276

Query: 381 DLFSK-KPEIFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
           + F K K   F+LFGS  G+ D+LF + A G   +P +  
Sbjct: 277 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRID 316
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ... Length = 327 Back     alignment and structure
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Length = 691 Back     alignment and structure
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Length = 691 Back     alignment and structure
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A* Length = 332 Back     alignment and structure
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Length = 689 Back     alignment and structure
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Length = 689 Back     alignment and structure
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A* Length = 698 Back     alignment and structure
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A* Length = 698 Back     alignment and structure
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Length = 687 Back     alignment and structure
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Length = 687 Back     alignment and structure
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* 2ds9_A* 2dsf_A* 2dvc_A* 2dwa_A* 2dwh_A* ... Length = 335 Back     alignment and structure
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E Length = 342 Back     alignment and structure
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Length = 686 Back     alignment and structure
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Length = 686 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A Length = 321 Back     alignment and structure
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Length = 310 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
3mc2_A687 Inhibitor of carbonic anhydrase; MICA, transferrin 100.0
3v83_A698 Serotransferrin; iron binding domain, iron carrier 100.0
2d3i_A686 Ovotransferrin; aluminum, metal-binding, transport 100.0
1blf_A689 Lactoferrin; transferrin, iron-binding protein, ca 100.0
1cb6_A691 Protein (lactoferrin); iron transport, apolactofer 100.0
3tod_A335 Lactotransferrin; C-LOBE, metal binding protein, 1 100.0
3skp_A342 Serotransferrin; iron binding protein, transferrin 100.0
1iej_A332 Ovotransferrin; iron, metal binding protein; 1.65A 100.0
1h45_A334 Lactoferrin; metal transport, iron transport, meta 100.0
1ryo_A327 Serotransferrin; iron transport, metal transport; 100.0
1cb6_A 691 Protein (lactoferrin); iron transport, apolactofer 100.0
2d3i_A 686 Ovotransferrin; aluminum, metal-binding, transport 100.0
3mc2_A 687 Inhibitor of carbonic anhydrase; MICA, transferrin 100.0
3v83_A 698 Serotransferrin; iron binding domain, iron carrier 100.0
1blf_A 689 Lactoferrin; transferrin, iron-binding protein, ca 100.0
1iej_A332 Ovotransferrin; iron, metal binding protein; 1.65A 99.26
3tod_A335 Lactotransferrin; C-LOBE, metal binding protein, 1 99.22
3skp_A342 Serotransferrin; iron binding protein, transferrin 99.21
1h45_A334 Lactoferrin; metal transport, iron transport, meta 99.2
1ryo_A327 Serotransferrin; iron transport, metal transport; 99.14
3p7i_A321 PHND, subunit of alkylphosphonate ABC transporter; 99.08
2j4u_S45 Lactotransferrin, lactoferrin; membrane protein/hy 99.03
3n5l_A310 Binding protein component of ABC phosphonate TRAN; 98.96
3ksx_A324 Nitrate transport protein; SSUA, alkanesulfonate-b 97.81
3qsl_A346 Putative exported protein; unknown, structural gen 97.54
3ix1_A302 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine 97.47
3uif_A348 Sulfonate ABC transporter, periplasmic sulfonate- 97.43
3un6_A341 Hypothetical protein saouhsc_00137; structural gen 97.39
4ddd_A327 Immunogenic protein; ssgcid, structural genomics, 97.33
1us5_A314 Putative GLUR0 ligand binding core; receptor, memb 97.16
2x26_A308 Periplasmic aliphatic sulphonates-binding protein; 97.0
3del_B242 Arginine binding protein; alpha and beta protein ( 96.75
2vha_A287 Periplasmic binding transport protein; periplasmic 96.49
3kzg_A237 Arginine 3RD transport system periplasmic binding 96.46
4eq9_A246 ABC transporter substrate-binding protein-amino A 96.39
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 96.25
3qax_A268 Probable ABC transporter arginine-binding protein; 96.23
2qpq_A301 Protein BUG27; alpha/beta domain, venus flytrap, t 96.14
2f5x_A312 BUGD; periplasmic binding protein, transport prote 96.0
3hv1_A268 Polar amino acid ABC uptake transporter substrate 95.98
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 95.85
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 95.83
4esw_A342 Pyrimidine biosynthesis enzyme THI13; thiamin pyri 95.82
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 95.75
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 95.72
2dvz_A314 BUGE, putative exported protein; periplamsic bindi 95.54
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 95.42
3tql_A227 Arginine-binding protein; transport and binding pr 95.33
2yln_A283 Putative ABC transporter, periplasmic binding Pro 95.32
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 95.11
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 94.99
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 94.65
3k4u_A245 Binding component of ABC transporter; structural g 94.55
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 94.13
2g29_A417 Nitrate transport protein NRTA; solute-binding pro 93.64
3myu_A344 High affinity transport system protein P37; Mg289, 92.5
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 91.83
1xs5_A241 29 kDa protein, membrane lipoprotein TPN32; peripl 91.82
3hn0_A283 Nitrate transport protein; ABC transporter, struct 91.78
2q88_A257 EHUB, putative ABC transporter amino acid-binding 91.11
2nxo_A291 Hypothetical protein SCO4506; PFAM, DUF178, NYSGXR 91.04
2czl_A272 Hypothetical protein TTHA1568; conserved hypotheti 90.69
3eki_A403 High affinity transport system protein P37; TPP, c 90.56
2x7q_A321 Ca3427, possible thiamine biosynthesis enzyme; unk 90.52
2xxp_A 398 CPS2A; replication, peptidoglycan, LCP, LYTR; HET: 90.06
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 89.63
1p99_A295 Hypothetical protein PG110; structural genomics, P 89.0
1zbm_A280 Hypothetical protein AF1704; alpha-beta protein, s 87.92
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 87.73
4gvo_A243 LMO2349 protein; structural genomics, IDP05245, L- 87.59
1xt8_A292 Putative amino-acid transporter periplasmic solut 87.23
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 83.5
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 83.04
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 82.93
4h5g_A243 Amino acid ABC superfamily ATP binding cassette tr 82.58
2de3_A365 Dibenzothiophene desulfurization enzyme B; alpha-b 80.42
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 80.29
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=2.8e-99  Score=821.97  Aligned_cols=390  Identities=25%  Similarity=0.418  Sum_probs=342.0

Q ss_pred             CCCCCCCceeeecCCCeEEecCCcccccccHHHHHHHHHHHhh-cC--------CCCCccccccceeeecccccc-cCCC
Q psy11925          3 LLQSETPCTWAARPWPGFVANDRIEVNTQDLTQLRNYISQLNK-LG--------ESSGNDWLINVLGIDSNSTAV-DNKK   72 (458)
Q Consensus         3 ~~~~~~~C~wa~~Pw~aVvar~d~~~~~~~v~~i~~~L~~~~~-~g--------~~sS~~~~~k~LlF~Dst~~v-~~~~   72 (458)
                      -++.+++||||++|||+||+|++..    ..+.||++|.++|+ ||        .++|+.  ++||||+|+|..+ ..+.
T Consensus       240 pv~~~~~C~la~~P~~aVv~r~~~~----~~~~i~~~L~~~q~~fg~~~~~~f~lF~s~~--gkdLlF~Dst~~L~~ip~  313 (687)
T 3mc2_A          240 PVEEYEQCYLARVPSHVVVARSVDG----KEDSIQELLRVAQEHFGKDKSSPFQLFGSPH--GEDLLFTDAAHGLLRVPR  313 (687)
T ss_dssp             ETTCGGGSCSEEEECCEEEEESSSS----CHHHHHHHHHHHHHHSSSSSSSSCCSSCCSS--SSSCSSCTTCCEEEECCT
T ss_pred             CCCCCCCCceecccCceEEEccCcc----hHHHHHHHHHHHHHHhccCCCccceeecCCC--CceeeecccccccccCCC
Confidence            4677899999999999999999642    35779999999985 44        344443  4999999999964 4555


Q ss_pred             CCChhhhhccccchhhhccCCC---CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCcc
Q psy11925         73 TLHPTQYLQKANYEDVIGRVVK---PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAAD  149 (458)
Q Consensus        73 ~~~~~~YLg~a~Y~~ai~~~~~---p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD  149 (458)
                      .++++.||| ++|+++|++++.   |.++|||||+|+.|++||++|+.+     ++|.|+|++++|+++||++|++|+||
T Consensus       314 ~~~~~~yLg-~~Y~~~i~~l~~~~~~~~~vrWCv~s~~E~~KC~~~~~~-----~~p~~~Cv~~~s~~dCi~~I~~g~AD  387 (687)
T 3mc2_A          314 KIDISLYLG-YEFLSAFRNLKRGLEDSQRVKWCAVGQQERTKCDQWSAV-----SGGALACATEETPEDCIAATMKGEAD  387 (687)
T ss_dssp             TCCHHHHHH-HHHHHHHHHHCC----CCCEEEEEESSHHHHHHHHHHHH-----TTTSEEEEEESSHHHHHHHHHHTSSC
T ss_pred             CCCHHHhhC-HHHHHHHHhccccCCCCCceEEccCCHHHHHHHHHHHhh-----cCCceEEEeCCCHHHHHHHHhCCCCC
Confidence            689999999 799999997665   457899999999999999999874     47899999999999999999999999


Q ss_pred             EEEeCCcceEEeccCCCceEEEEEeecCC--------------cce-EEEEEEecCCCccChhhhcCCceeeCCCCCCCc
Q psy11925        150 VITLDATEAVLGRKNLNLRPILKEKYGNE--------------KDL-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTG  214 (458)
Q Consensus       150 ~~~ld~~~~y~A~~~~~L~pil~E~y~~~--------------~~~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taG  214 (458)
                      ++++|++++|+|++ |+|+|||+|.|+..              ... |+||||||++...+|++||||||||||++++||
T Consensus       388 a~tldgg~vy~Ag~-~~L~Pv~~E~y~~~~~~~~~~~~c~~~~~~~YyaVAVVkks~~~~~~~~LrGkkSCHtg~g~tAG  466 (687)
T 3mc2_A          388 AMSLDGGFAYVAGH-CGLVPVLAENYLSTHSSGRLGSKCVNAPLEGYYVVAVVKKSDVGITWKSLQGKKSCHTAVGTSEG  466 (687)
T ss_dssp             BEEECHHHHHHHHH-TTCEEEEECCBCCCSCSSCCSTTSTTCCCCCEEEEEEEESSCSCCCTTCCTTSCEEESCTTCCCC
T ss_pred             EEEECchHheehhh-cCcEEEeeecccccccccccccccccCCCceEEEEEEEecCCCCCCHhHcCCCCCCCCCCCCccc
Confidence            99999999999998 99999999999741              223 999999997666799999999999999999999


Q ss_pred             hHHHHHHHHHcCCCCCCCCccccccccccccCcccCCCCccccCCCchhhhhCCCC----CCC---------Chh-hhhh
Q psy11925        215 WVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDAPASLEKICPKA----TRV---------TYT-PLQC  280 (458)
Q Consensus       215 w~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~pG~~~~~~~~~~~LC~lC~g~----~~C---------Gy~-A~rC  280 (458)
                      |++||+.|+++    ..+|    ++++||+ +||+||++.     +++||+||.|.    ++|         ||+ ||||
T Consensus       467 WniP~g~L~~~----~~~c----~~~~FFs-~sC~PGa~~-----~~~LC~lC~g~~~~~~kC~~~~~e~Y~Gy~GAfrC  532 (687)
T 3mc2_A          467 WNVPMGLIYDQ----TGSC----KFDAFFS-RSCAPGSDP-----DSPLCALCVGGNNPAHMCAANNAEGYHGSSGALRC  532 (687)
T ss_dssp             CCTHHHHHHTT----SCCS----CHHHHSS-SEECTTSCT-----TSTTBSSCCCCSSTTCTTCSSSSSTTCHHHHHHHH
T ss_pred             hhhhHhhhhcC----CCCC----CHHHhcc-ccccCCCCC-----CcchHHhcCCCCCCCCcCCCCCCCcCcCCchhHHh
Confidence            99999999876    2467    7899998 999999965     57999999994    678         899 9999


Q ss_pred             cccCCCcEEEEechhhhhhhhcccccccchhhhccCCCCCCCCCCCCcccccccCCCCccccccCccccccccCCceEEE
Q psy11925        281 LKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVT  360 (458)
Q Consensus       281 L~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~  360 (458)
                      |+|| ||||||||+||.+|       ++|+    ++++||++++++|||  ||||||+|+||++|++|||+++|+||||+
T Consensus       533 L~eg-GDVAFVkh~tV~en-------~~g~----~~~~wa~~l~~~dye--LLC~dgtr~pv~~~~~C~La~vP~haVv~  598 (687)
T 3mc2_A          533 LVEK-GDVAFMKHPTVLQN-------TDGK----NPEPWAKGLKHEDFE--LLCLDGTRKPVTEAQSCHLARVPNRAVFS  598 (687)
T ss_dssp             HHHT-CSEEEECTTCSTTT-------STTS----CCSGGGSSCCTTTEE--EECSSSCEEETTCTTTSCSEEECCCEEEE
T ss_pred             hccC-CeEEEEeCCcHHhh-------cCCC----CchhhhhccCccceE--EECCCCCcCCCCCCCcceeEeccCCeEEE
Confidence            9999 99999999999998       8998    899999999999999  99999999999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHhcCC---CccccccccCCCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhhhhhhH
Q psy11925        361 SNSKSNVEIDTIRHAILSAADLFSKK---PEIFKLFGSFMGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNMLSKVH  434 (458)
Q Consensus       361 r~~~~~~~~~~i~~~l~~~~~~fg~~---~~~F~lF~s~~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~~~~~  434 (458)
                      |+++.    +.|+++|+++|++||++   .+.|+||+|  ++|||||||+|++|++|| +.+|+.|.  +|...|.    
T Consensus       599 r~~~~----~~i~~~L~~~q~~fg~~~~~~~~F~lF~S--~~kdLLFkDst~~L~~~~~~~~~~~~LG~~y~~a~~----  668 (687)
T 3mc2_A          599 RKDKA----DFVRRILFNQQELFGRNGFEYMMFQMFES--SAKDLLFSDDTECLSNLQDKTTYKTYLGPQYLTLMD----  668 (687)
T ss_dssp             CSSSH----HHHHHHHHHHHHHHSTTCCSSSSCCSSCC--SSSCSSSCTTBCCCEECTTCCSHHHHHHHHHHHHTT----
T ss_pred             CCCcH----HHHHHHHHHHHHHhCcCCCCCCCceeccC--CCCCcccccccccceeCCCCCCHHHHhhHHHHHHHH----
Confidence            99853    46999999999999985   347999999  369999999999999998 67999996  7766654    


Q ss_pred             HHHHhhcccCccee
Q psy11925        435 ARYLFGLKSFNFYT  448 (458)
Q Consensus       435 ~~~~~~~~~~~~~~  448 (458)
                           .+|.|..-.
T Consensus       669 -----~l~~c~~~~  677 (687)
T 3mc2_A          669 -----NFRQCLSSE  677 (687)
T ss_dssp             -----SSGGGCCCH
T ss_pred             -----HhhhcCchh
Confidence                 566665443
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A* Back     alignment and structure
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Back     alignment and structure
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Back     alignment and structure
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Back     alignment and structure
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 4fim_A* 4fjp_A* 4for_A* 4g2z_A* 4grk_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* ... Back     alignment and structure
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E Back     alignment and structure
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A* Back     alignment and structure
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A Back     alignment and structure
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ... Back     alignment and structure
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Back     alignment and structure
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A* Back     alignment and structure
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Back     alignment and structure
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A* Back     alignment and structure
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Back     alignment and structure
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A* Back     alignment and structure
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 4fim_A* 4fjp_A* 4for_A* 4g2z_A* 4grk_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* ... Back     alignment and structure
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E Back     alignment and structure
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A Back     alignment and structure
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ... Back     alignment and structure
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A Back     alignment and structure
>2j4u_S Lactotransferrin, lactoferrin; membrane protein/hydrolase, membrane protein/hydrolase complex, iron, OMPC, porin, complex, protease; 2.99A {Camelus dromedarius} Back     alignment and structure
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica} Back     alignment and structure
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Back     alignment and structure
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus} Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis} Back     alignment and structure
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A* Back     alignment and structure
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis} Back     alignment and structure
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I} Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A* Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis} Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP} Back     alignment and structure
>3myu_A High affinity transport system protein P37; Mg289, CYPL, extracytoplasmic, thiamine binding protein, lipoprotein; HET: VIB; 1.95A {Mycoplasma genitalium} Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1 Back     alignment and structure
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis} Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1 Back     alignment and structure
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A* Back     alignment and structure
>3eki_A High affinity transport system protein P37; TPP, cell membrane, lipoprotein, membrane, transport protein, palmitate; HET: TPP; 1.60A {Mycoplasma hyorhinis} PDB: 3e79_A* 3e78_A* Back     alignment and structure
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A Back     alignment and structure
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A* Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1 Back     alignment and structure
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1 Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* Back     alignment and structure
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 458
d1ce2a1333 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buf 2e-66
d1eh3a_324 c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [T 5e-64
d1ryoa_324 c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [T 7e-61
d1ieja_329 c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gall 8e-61
d2hava1325 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctola 2e-53
d2b6da1344 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) 1e-52
d1h76a2346 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) 3e-52
d1h76a2346 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) 1e-05
d2d3ia2352 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gall 4e-48
d1gv8a_159 c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhyn 3e-29
d1lgbc_159 c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [T 1e-28
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]} Length = 333 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Transferrin
domain: Lactoferrin
species: Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]

 Score =  213 bits (544), Expect = 2e-66
 Identities = 102/340 (30%), Positives = 142/340 (41%), Gaps = 41/340 (12%)

Query: 95  PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLD 154
           P K +RWC  S     KC  ++     +   P   C R  S   C++ I +  AD +TLD
Sbjct: 2   PRKNVRWCTISQPEWLKCHRWQWR-MKKLGAPSITCVRRASVLECIRAITEKKADAVTLD 60

Query: 155 ATEAVL-GRKNLNLRPILKEKYGNEKDLL----AVAVVNKNSKVKSLEELKGLKSCHTAY 209
                  GR    LRP+  E YG ++       AVAVV K S    L++L+G  SCHT  
Sbjct: 61  GGMVFEAGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNF-QLDQLQGRNSCHTGL 119

Query: 210 MRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCVPGIDEEEKDA-----PASLE 264
            R+ GW  P+  L       +   P    VA+FF   SCVP +D +             E
Sbjct: 120 GRSAGWNIPMGILRPYLSWTESLEPLQGAVAKFF-SASCVPCVDRQAYPNLCQLCKGEGE 178

Query: 265 KICPKATRVTYT----PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKGGRA 320
             C  + R  Y       +CL+ G GDVAF+K+  V + + E   +              
Sbjct: 179 NQCACSPREPYFGYSGAFKCLQDGAGDVAFVKETTVFENLPEKADRDQY----------- 227

Query: 321 PVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAA 380
                     E LC    RAPV    +C+L  VP H VV  +     + D I   +  A 
Sbjct: 228 ----------ELLCLNNTRAPVDAFKECHLAQVPSHAVVARSVDG--KEDLIWKLLSKAQ 275

Query: 381 DLFSKKPE-IFKLFGSFMGKPDVLFLNPATGVEVLPDQAT 419
           + F K     F+LFGS  G+ D+LF + A G   +P +  
Sbjct: 276 EKFGKNKSGSFQLFGSPPGQRDLLFKDSALGFLRIPSKVD 315
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} Length = 324 Back     information, alignment and structure
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId: 9606]} Length = 324 Back     information, alignment and structure
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 329 Back     information, alignment and structure
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 325 Back     information, alignment and structure
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) [TaxId: 9913]} Length = 344 Back     information, alignment and structure
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId: 9823]} Length = 346 Back     information, alignment and structure
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId: 9823]} Length = 346 Back     information, alignment and structure
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 352 Back     information, alignment and structure
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos) [TaxId: 8839]} Length = 159 Back     information, alignment and structure
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} Length = 159 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
d1ce2a1333 Lactoferrin {Domestic water buffalo (Bubalus arnee 100.0
d1ieja_329 Ovotransferrin {Chicken (Gallus gallus) [TaxId: 90 100.0
d1eh3a_324 Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ryoa_324 Transferrin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2hava1325 Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId 100.0
d2d3ia2352 Ovotransferrin {Chicken (Gallus gallus) [TaxId: 90 100.0
d2b6da1344 Lactoferrin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1h76a2346 Transferrin {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d1gv8a_159 Ovotransferrin {Duck (Anas platyrhynchos) [TaxId: 100.0
d1lgbc_159 Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2d3ia2352 Ovotransferrin {Chicken (Gallus gallus) [TaxId: 90 99.28
d1ieja_329 Ovotransferrin {Chicken (Gallus gallus) [TaxId: 90 99.22
d2b6da1344 Lactoferrin {Cow (Bos taurus) [TaxId: 9913]} 99.21
d1h76a2346 Transferrin {Pig (Sus scrofa) [TaxId: 9823]} 99.19
d1ryoa_324 Transferrin {Human (Homo sapiens) [TaxId: 9606]} 99.14
d1ce2a1333 Lactoferrin {Domestic water buffalo (Bubalus arnee 99.08
d1eh3a_324 Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} 99.06
d2hava1325 Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId 99.0
d1us5a_298 Putative GluR0 ligand binding core {Thermus thermo 96.23
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 93.65
d2ozza1228 Hypothetical protein YhfZ {Shigella flexneri [TaxI 92.4
d2nxoa1277 Hypothetical protein SCo4506 {Streptomyces coelico 86.19
d2fyia1220 LysR-type regulatory protein Cbl {Escherichia coli 81.19
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Transferrin
domain: Lactoferrin
species: Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]

Probab=100.00  E-value=8.6e-83  Score=643.84  Aligned_cols=307  Identities=33%  Similarity=0.568  Sum_probs=275.3

Q ss_pred             CCCceEEEeCChhHHhHHHHHHHHHhcCCCCCCeEEEecCCHHHHHHHHHcCCccEEEeCCcceEEecc-CCCceEEEEE
Q psy11925         95 PIKPIRWCVSSPEGMSKCLAFKDAAFSRDIRPPFECNREKSSKVCLKLIADGAADVITLDATEAVLGRK-NLNLRPILKE  173 (458)
Q Consensus        95 p~~~vrwCv~s~~E~~KC~~l~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~-~~~L~pil~E  173 (458)
                      |.++|||||+|+.|++||++|+.++. ....|+|+||+++|+.+||++|++|+||++++||+++|+|++ .|+|+||++|
T Consensus         2 P~~~vrwC~~s~~E~~KC~~l~~a~~-~~~~p~v~CV~~~s~~~Ci~~I~~g~ADi~~ld~~~~y~A~~~~~~l~pi~~E   80 (333)
T d1ce2a1           2 PRKNVRWCTISQPEWLKCHRWQWRMK-KLGAPSITCVRRASVLECIRAITEKKADAVTLDGGMVFEAGRDPYKLRPVAAE   80 (333)
T ss_dssp             TTSSEEEEESSHHHHHHHHHHHHHHH-TTCCSCEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEE
T ss_pred             CCCCEEEEeCCHHHHHHHHHHHHHHH-hcCCCceEEEeCCCHHHHHHHHHcCCCCEEEEChHHHHHhhhccCCCEEEEEe
Confidence            77899999999999999999997654 445699999999999999999999999999999999999974 5999999999


Q ss_pred             eecCCcc---e-EEEEEEecCCCccChhhhcCCceeeCCCCCCCchHHHHHHHHHcCCCCCCCCccccccccccccCccc
Q psy11925        174 KYGNEKD---L-LAVAVVNKNSKVKSLEELKGLKSCHTAYMRTTGWVAPVYNLLEKGLIKKDSCPYYKGVAEFFTGGSCV  249 (458)
Q Consensus       174 ~y~~~~~---~-~aVAVVkk~s~~~~l~dLkGkksChtg~~~taGw~~Pv~~L~~~~~i~~~~c~~~~~~~~FFsg~sC~  249 (458)
                      .|+.++.   . ++|||||+++.+ +|+||||||+||||+++++||++|+++|+++++++...|++.+++++||+ +||+
T Consensus        81 ~y~~~~~~~~~Y~~VaVVkk~s~~-~l~dLkGKksChtg~~~taGw~~Pv~~L~~~~~~~~~~~~~~~~v~~FF~-~sC~  158 (333)
T d1ce2a1          81 IYGTKESPQTHYYAVAVVKKGSNF-QLDQLQGRNSCHTGLGRSAGWNIPMGILRPYLSWTESLEPLQGAVAKFFS-ASCV  158 (333)
T ss_dssp             EEECSSSEESEEEEEEEEETTCCC-CGGGCTTCEEEESCTTCTTTTHHHHHHTHHHHCCCTTTCCHHHHHHTTSS-EEEC
T ss_pred             eeccCCCCCcEEEEEEEEecCCcc-chhhccCCceeecCCCCccccchhHHHHhhhcCCCcccCcHHHHHHHhhh-cccc
Confidence            9976543   3 899999999887 79999999999999999999999999999999998888999999999998 9999


Q ss_pred             CCCCccccCCCchhhhhCCC--CCCC---------Chh-hhhhcccCCCcEEEEechhhhhhhhcccccccchhhhccCC
Q psy11925        250 PGIDEEEKDAPASLEKICPK--ATRV---------TYT-PLQCLKSGDGDVAFIKQVKVNKAIEEGLFKTDEIEYLCSKG  317 (458)
Q Consensus       250 pG~~~~~~~~~~~LC~lC~g--~~~C---------Gy~-A~rCL~eg~GDVAFvk~~tv~~~~~~~~~~~~g~~~~~~~~  317 (458)
                      ||++..   .+.+||+||.|  .++|         ||+ |||||+||+||||||+|+||.++       ++++       
T Consensus       159 Pg~~~~---~~~~LC~lC~g~~~~~c~~~~~~~Y~G~~GAlrCL~eg~GDVAFvk~~tv~~~-------~~~~-------  221 (333)
T d1ce2a1         159 PCVDRQ---AYPNLCQLCKGEGENQCACSPREPYFGYSGAFKCLQDGAGDVAFVKETTVFEN-------LPEK-------  221 (333)
T ss_dssp             TTSCTT---TCGGGGTTCCCCGGGTTCSSTTSTTCSHHHHHHHHHTTSCSEEEEETTHHHHH-------CCSH-------
T ss_pred             cCcccc---cCcchhccCCCCCCCCCCCCCCCCcccchhHHHHHHcCCCcEEEEecchHhhh-------cccc-------
Confidence            999764   46799999998  4666         999 99999999999999999999998       3332       


Q ss_pred             CCCCCCCCCCcccccccCCCCccccccCccccccccCCceEEEcCCCChhHHHHHHHHHHHHHHHhcCC-CccccccccC
Q psy11925        318 GRAPVSKAGDYEIEYLCSKGGRAPVSKAADCNLGVVPPHMVVTSNSKSNVEIDTIRHAILSAADLFSKK-PEIFKLFGSF  396 (458)
Q Consensus       318 ~wa~~~~~~dy~~~LLCpdg~r~~v~~~~~C~l~~vP~~aVv~r~~~~~~~~~~i~~~l~~~~~~fg~~-~~~F~lF~s~  396 (458)
                           ..++||+  ||||||+|+|+++|+.|||+++|+|+||+|++.+.  .++|+++|..++++||++ ...|+||+|+
T Consensus       222 -----~~~~dy~--lLC~dg~~~~~~~~~~C~~~~~P~~~vv~~~~~~~--~~~i~~~L~~~~~~fg~~~~~~f~lF~s~  292 (333)
T d1ce2a1         222 -----ADRDQYE--LLCLNNTRAPVDAFKECHLAQVPSHAVVARSVDGK--EDLIWKLLSKAQEKFGKNKSGSFQLFGSP  292 (333)
T ss_dssp             -----HHHTTEE--EECTTSCEEEGGGTTTSCSEEEECCEEEEESSSCC--HHHHHHHHHHHHHHHCTTSCSSSCTTCCC
T ss_pred             -----cCCCCee--EECCCCCCcccccccccceeEeccceEEEcCCccc--HHHHHHHHHHHHHHhCCCCCCceeccCCC
Confidence                 2468999  99999999999999999999999999999997553  367999999999999986 4569999999


Q ss_pred             CCCCCccccCCCCcceeCC-CCCHHHHH--HHHHhhh
Q psy11925        397 MGKPDVLFLNPATGVEVLP-DQATDVET--NYSNNML  430 (458)
Q Consensus       397 ~~~kdllF~D~t~~l~~v~-~~~~~~~~--~y~~~~~  430 (458)
                      .|++||||||+|++|++|| ..+|+.|.  +|...+.
T Consensus       293 ~g~~dllFkD~t~~l~~v~~~~~~~~~lG~~y~~~~~  329 (333)
T d1ce2a1         293 PGQRDLLFKDSALGFLRIPSKVDSALYLGSRYLTALK  329 (333)
T ss_dssp             TTCCCCSSCTTCCEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCcccccCccCceECCCCCCHHHhccHHHHHHHH
Confidence            9889999999999999998 56888885  5665554
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos) [TaxId: 8839]} Back     information, alignment and structure
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1h76a2 c.94.1.2 (A:342-687) Transferrin {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo (Bubalus arnee bubalis) [TaxId: 89462]} Back     information, alignment and structure
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]} Back     information, alignment and structure