Psyllid ID: psy11988

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNATFGPPHVASGLLNVAFALLHVAFGFLVLSFGFQAFLTLKLGRFVSY
Secondary Structure (PSIPRED)
cccEEEEcccccccccccccccccccccccccccccEEccEEEccccEEccccccccEEEEcccEEEEEEEccccccccccccccccccccccccccccEEEccccEEEccccccEEEEccccEEEEEEEcccccccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccccccccccccccccEEccEEEccccEccccccccEEEEEcccEEEEEccccccccccccccccccccccccccEEccEEEccccEcccccccccHHHHHHHHHEcHHHHHHHHHHHHHHHHHHHHHccccEEcc
Coil and Loop (DISEMBL)
ngfvecnrkscpnqegcHKLLEAkekdgccrkcqgcvhhgvfresgsewtdpdnpcriftckagvvtetemqcyapckhptppgpgqccptcpgkrpygLLYVAFGLlnatfgpphvaSGLLNVAFALLHVAFGFLVLSFGFQAFLTlklgrfvsy
Flexible Loop (DISEMBL)
ngfvecnrkscpnqegCHKLLEAKEKDGCCRKCQGCVHHGVfresgsewtdpdnpcrIFTCKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNATFGPPHVASGLLNVAFALLHVAFGFLVLSFGFQAFLTLKLGRFVSY
Low Complexity Region (SEG)
NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCYAPCKHptppgpgqccptcpgKRPYGLLYVAFGLLNATFGPPHVASGLLNVAFALLHVAFGFLVLSFGFQAFLTLKLGRFVSY
Disordered region (IsUnstruct)
****************CHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNATFGPPHVASGLLNVAFALLHVAFGFLVLSFGFQAFLTLKLGRFV**
Disordered Region (DISOPRED)
NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNATFGPPHVASGLLNVAFALLHVAFGFLVLSFGFQAFLTLKLGRFVS*
Disordered Region (DISEMBL)
**********CPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNATFGPPHVASGLLNVAFALLHVAFGFLVLSFGFQAFLTLKLGRFVSY
Disordered Region (DISPRO)
*GFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNATFGPPHVASGLLNVAFALLHVAFGFLVLSFGFQAFLTLKLGRFVSY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNATFGPPHVASGLLNVAFALLHVAFGFLVLSFGFQAFLTLKLGRFVSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
Q8CJ69	685	BMP-binding endothelial r	yes	N/A	0.634	0.144	0.407	6e-13
Q8N8U9	685	BMP-binding endothelial r	yes	N/A	0.634	0.144	0.388	5e-11
Q9IBG7	2327	Kielin/chordin-like prote	N/A	N/A	0.737	0.049	0.357	6e-10
Q6ZWJ8	1503	Kielin/chordin-like prote	no	N/A	0.557	0.057	0.395	8e-09
Q3U492	1550	Kielin/chordin-like prote	no	N/A	0.621	0.062	0.356	2e-08
Q3U515	929	von Willebrand factor C a	no	N/A	0.365	0.061	0.457	4e-05
Q96DN2	955	von Willebrand factor C a	no	N/A	0.365	0.059	0.440	7e-05
P12021	1150	Apomucin (Fragment) OS=Su	no	N/A	0.570	0.077	0.282	0.0003

>sp|Q8CJ69|BMPER_MOUSE BMP-binding endothelial regulator protein OS=Mus musculus GN=Bmper PE=1 SV=1

 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 1   NGFVECNRKSCPN-QEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIF 59
           N  V C R+ CP     C   L  K++  CC +C+GC H G    S  +W  P  PC + 
Sbjct: 74  NKEVTCKREKCPVLSRDC--ALAIKQRGACCERCKGCTHEGRTYNSSFKWQTPAEPCVLR 131

Query: 60  TCKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLY 102
            C+ GVVTE+E++C   CK+P     G CCPTCPG    G+ Y
Sbjct: 132 QCQEGVVTESEVRCVVHCKNPA-EHQGACCPTCPGCVFEGVQY 173

Inhibitor of bone morphogenetic protein (BMP) function, it may regulate BMP responsiveness of osteoblasts and chondrocytes.
Mus musculus (taxid: 10090)

>sp|Q8N8U9|BMPER_HUMAN BMP-binding endothelial regulator protein OS=Homo sapiens GN=BMPER PE=1 SV=3

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 1   NGFVECNRKSCPN-QEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIF 59
           N  V C R+ CP     C   L  K++  CC +C+GC + G    S  +W  P  PC + 
Sbjct: 74  NKEVTCKREKCPVLSRDC--ALAIKQRGACCEQCKGCTYEGNTYNSSFKWQSPAEPCVLR 131

Query: 60  TCKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLY 102
            C+ GVVTE+ ++C   CK+P     G CCPTCPG    G+ Y
Sbjct: 132 QCQEGVVTESGVRCVVHCKNPL-EHLGMCCPTCPGCVFEGVQY 173

Inhibitor of bone morphogenetic protein (BMP) function, it may regulate BMP responsiveness of osteoblasts and chondrocytes.

Homo sapiens (taxid: 9606)

>sp|Q9IBG7|KCP_XENLA Kielin/chordin-like protein OS=Xenopus laevis GN=kcp PE=2 SV=1

 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 57/126 (45%), Gaps = 11/126 (8%)

Query: 1   NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFT 60
           +G V C R SCP       +L  K    CC +CQ C+   V R+ G EW    +PC+   
Sbjct: 639 DGNVHCVRVSCPELSC---VLHEKIPGECCSQCQSCMDGTVKRKHGEEWKPQGDPCQSCR 695

Query: 61  CKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNATFGPPHVASG 120
           C  G V   +  C A C++P PP PG CCP C      G LY     LN   G P  ++ 
Sbjct: 696 CLEGRVQCRKRHCAALCRNPLPPRPGTCCPMC-----DGCLYNGRSYLN---GQPVRSTD 747

Query: 121 LLNVAF 126
             N  F
Sbjct: 748 QCNRCF 753

May be a signaling molecule that mediates inductive activities of the embryonic midline. Able to dorsalize mesoderm.

Xenopus laevis (taxid: 8355)

>sp|Q6ZWJ8|KCP_HUMAN Kielin/chordin-like protein OS=Homo sapiens GN=KCP PE=2 SV=2

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 2   GFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTC 61
           G V C R  CP        L+  E+  CC +C+GC+ HG     GS W  PD+ C    C
Sbjct: 865 GQVSCVRLQCPPLPC---KLQVTERGSCCPRCRGCLAHGEEHPEGSRWVPPDSACSSCVC 921

Query: 62  KAGVVTETEMQCYAPCKHPTPPGPGQCCPTC 92
             GVVT   +QC + C  P   GP  CCP C
Sbjct: 922 HEGVVTCARIQCISSCAQPR-QGPHDCCPQC 951

Enhances bone morphogenetic protein (BMP) signaling in a paracrine manner. In contrast, it inhibits both the activin-A and TGFB1-mediated signaling pathways.

Homo sapiens (taxid: 9606)

>sp|Q3U492|KCP_MOUSE Kielin/chordin-like protein OS=Mus musculus GN=Kcp PE=1 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 2    GFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTC 61
            G V C R  CP+    H++ E      CC +C GC+  G     GS W   D+PC    C
Sbjct: 929  GQVSCTRLQCPSLPCLHQVTEPGT---CCPRCTGCLARGEEHPEGSSWVPADSPCSSCMC 985

Query: 62   KAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLY 102
              G++T  ++QC + C  P   GP  CCP C G    G  Y
Sbjct: 986  HKGIITCAQVQCVSACIWPQ-EGPSDCCPQCSGCEHGGRKY 1025

Enhances bone morphogenetic protein (BMP) signaling in a paracrine manner. In contrast, it inhibits both the activin-A and TGFB1-mediated signaling pathways.

Mus musculus (taxid: 10090)

>sp|Q3U515|VWCE_MOUSE von Willebrand factor C and EGF domain-containing protein OS=Mus musculus GN=Vwce PE=2 SV=2

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 36  CVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPG 94
           C H G   ESGS W  P   C    C+ G VT   ++C A C HP PP  G CCP+C G
Sbjct: 378 CWHLGATYESGSRWNQPG--CSQCLCQDGEVTCGGVRCDATCSHPVPPRDGGCCPSCTG 434

May be a regulatory element in the beta-catenin signaling pathway and a target for chemoprevention of hapatocellular carcinoma.

Mus musculus (taxid: 10090)

>sp|Q96DN2|VWCE_HUMAN von Willebrand factor C and EGF domain-containing protein OS=Homo sapiens GN=VWCE PE=2 SV=2

 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 36  CVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPG 94
           C H G   ES S WT+P   C    C+ G VT  +++C A C HP P   G CCP+C G
Sbjct: 386 CWHLGAMHESRSRWTEPG--CSQCWCEDGKVTCEKVRCEAACSHPIPSRDGGCCPSCTG 442

May be a regulatory element in the beta-catenin signaling pathway and a target for chemoprevention of hapatocellular carcinoma.

Homo sapiens (taxid: 9606)

>sp|P12021|MUCAP_PIG Apomucin (Fragment) OS=Sus scrofa PE=1 SV=2

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 4    VECNRKSCPNQEGC---HKLLEAKEKDGCCR----KCQGCVHHGVFRESGSEWTDPDNPC 56
            V+C  K CP+   C    +L++ K  D CC     + + C+ +    E GS + DP+NPC
Sbjct: 960  VDCKPKECPSPPTCKTGERLIKFKANDTCCEIGHCEKRTCLFNNTDYEVGSSFDDPNNPC 1019

Query: 57   RIFTCKAGVVTETEMQCYAP---CKHPTPPGPGQCCPTC 92
              ++C+    T     C       +        QCC TC
Sbjct: 1020 VTYSCQNTGFTAVVQNCPKQTWCAEEDRVYDSKQCCYTC 1058

Apomucin is part of mucin, the major glycoprotein synthesized and secreted by mucous cells of the submaxillary gland. Its highly viscous aqueous solutions serve to lubricate the oral cavity and to protect it from the external environment.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
328720874	626	PREDICTED: BMP-binding endothelial regul	0.730	0.182	0.513	4e-28
345487206	637	PREDICTED: BMP-binding endothelial regul	0.596	0.145	0.585	1e-27
340720481	640	PREDICTED: BMP-binding endothelial regul	0.724	0.176	0.508	4e-27
91090818	652	PREDICTED: similar to crossveinless 2 CG	0.589	0.141	0.580	6e-27
350412626	648	PREDICTED: BMP-binding endothelial regul	0.724	0.174	0.5	1e-26
383864616	643	PREDICTED: BMP-binding endothelial regul	0.724	0.175	0.482	3e-26
156541972	683	PREDICTED: kielin/chordin-like protein-l	0.653	0.149	0.524	1e-25
307212345	630	BMP-binding endothelial regulator protei	0.724	0.179	0.482	1e-25
332030634	777	BMP-binding endothelial regulator protei	0.596	0.119	0.553	1e-25
307175592	651	BMP-binding endothelial regulator protei	0.589	0.141	0.563	3e-24

>gi|328720874|ref|XP_001942569.2| PREDICTED: BMP-binding endothelial regulator protein-like [Acyrthosiphon pisum]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 79/115 (68%), Gaps = 1/115 (0%)

Query: 1   NGFVECNRKSCPNQEGCHKLLEA-KEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIF 59
           NGFVEC +  CP+++GC+ L +   +   CCR+C+GCV+ GV R+SG+EWTDP++PC + 
Sbjct: 57  NGFVECVKDQCPDEQGCYMLQDVFVDTKECCRRCKGCVYKGVPRDSGTEWTDPNDPCMVM 116

Query: 60  TCKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNATFGP 114
           +CKAGVVTET MQC  PC+ P PP PG CCPTC G R  G    A+  ++    P
Sbjct: 117 SCKAGVVTETRMQCITPCQQPLPPKPGTCCPTCSGCRVIGQEVAAWKNISLYDDP 171

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487206|ref|XP_001601040.2| PREDICTED: BMP-binding endothelial regulator protein-like [Nasonia vitripennis]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 76/94 (80%), Gaps = 1/94 (1%)

Query: 1   NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFT 60
           NGFVEC ++ CP+ EGC+ LL+ + K+ CC+KC+GCV + +   SG+EWT+P +PCRI+T
Sbjct: 58  NGFVECLKQQCPSIEGCYMLLDPR-KEECCQKCKGCVKNNIHHPSGTEWTEPSDPCRIYT 116

Query: 61  CKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPG 94
           C AGV+TE++++CY PC +PTPP PGQCCPTC G
Sbjct: 117 CNAGVITESKLRCYTPCANPTPPAPGQCCPTCAG 150

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720481|ref|XP_003398665.1| PREDICTED: BMP-binding endothelial regulator protein-like [Bombus terrestris]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 77/114 (67%), Gaps = 1/114 (0%)

Query: 1   NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFT 60
           NGFVEC ++ CP+ EGC+ LLE +E++ CC +C+GC  +GV  ES +EWT+ ++PCRIFT
Sbjct: 66  NGFVECRKQQCPSIEGCYTLLEPREEE-CCHRCKGCTRNGVHHESETEWTEENDPCRIFT 124

Query: 61  CKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNATFGP 114
           CKAGV+TE+ + CY PC +P P   GQCCP C G    G L  A   +  T  P
Sbjct: 125 CKAGVITESRLHCYTPCANPIPAAAGQCCPVCAGCNVNGQLVTADRSVTTTEDP 178

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090818|ref|XP_971488.1| PREDICTED: similar to crossveinless 2 CG15671-PA [Tribolium castaneum] gi|270014335|gb|EFA10783.1| crossveinless 2 [Tribolium castaneum]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 72/93 (77%), Gaps = 1/93 (1%)

Query: 1   NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFT 60
           NG VEC R+ CP  EGCH L+E K +DGCCRKC+GC+++ V   S +EWTDPDNPC++  
Sbjct: 59  NGLVECKREYCPPTEGCHMLVE-KTEDGCCRKCKGCIYNQVHHSSHTEWTDPDNPCKVLR 117

Query: 61  CKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCP 93
           C+AG+VT +++QC+ PC +P PP PG+CC TCP
Sbjct: 118 CEAGIVTVSDLQCHTPCANPLPPEPGKCCRTCP 150

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412626|ref|XP_003489709.1| PREDICTED: BMP-binding endothelial regulator protein-like [Bombus impatiens]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 1   NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFT 60
           NGFVEC ++ CP+ EGC+ LLE +E++ CC +C+GC  +GV  ES +EW + ++PCRIFT
Sbjct: 66  NGFVECRKQQCPSIEGCYTLLEPREEE-CCHRCKGCTRNGVHHESETEWIEENDPCRIFT 124

Query: 61  CKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNATFGP 114
           CKAGV+TE+ + CY PC +P P   GQCCP C G    G L  A   +  T  P
Sbjct: 125 CKAGVITESRLHCYTPCANPIPAAAGQCCPVCAGCNVNGQLVTADRSVTTTEDP 178

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864616|ref|XP_003707774.1| PREDICTED: BMP-binding endothelial regulator protein-like [Megachile rotundata]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 1   NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFT 60
           NGFVEC ++ CP+ EGC+ LLE +E D CC +C+GC  +G + ES +EWT+ ++PCRIF 
Sbjct: 63  NGFVECRKQQCPSIEGCYTLLEPRE-DECCHRCKGCARNGAYHESETEWTEGNDPCRIFV 121

Query: 61  CKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNATFGP 114
           CKAGV+TE+ ++CY PC +P P  PG CCP C G    G +  A   +  +  P
Sbjct: 122 CKAGVITESRLRCYTPCSNPIPAAPGHCCPVCLGCHVNGQMVTADRSVTTSEDP 175

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156541972|ref|XP_001599339.1| PREDICTED: kielin/chordin-like protein-like [Nasonia vitripennis]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 74/103 (71%), Gaps = 1/103 (0%)

Query: 1   NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFT 60
           +G VEC +K+CP  EGC++L E  + D CC+KC+GC+ +G++ ESG+EWT+P+ PCR  T
Sbjct: 66  SGMVECVKKNCPKIEGCYRLQEL-QTDECCQKCKGCMKNGLYYESGTEWTEPNRPCRSLT 124

Query: 61  CKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYV 103
           C AGV+TE+ ++CY PC  P PP  GQCCPTCP  R  G +  
Sbjct: 125 CIAGVITESSIRCYTPCSDPVPPALGQCCPTCPNCRFKGKIIT 167

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212345|gb|EFN88149.1| BMP-binding endothelial regulator protein [Harpegnathos saltator]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 1   NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFT 60
           NGFVEC +  CP+ EGC+ LL+  + + CC++C GC   GV+ ES +EW D  +PCRIFT
Sbjct: 64  NGFVECVKHQCPSIEGCYTLLDRLDNE-CCQRCTGCTQDGVYHESDTEWMDRKDPCRIFT 122

Query: 61  CKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNATFGP 114
           CK+G++TE++++CY PC +PTP  PGQCCP C G    G    A   +  T  P
Sbjct: 123 CKSGIITESKLRCYTPCSNPTPAAPGQCCPVCAGCLVNGQKVTADRSVTTTEDP 176

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030634|gb|EGI70322.1| BMP-binding endothelial regulator protein [Acromyrmex echinatior]

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 70/94 (74%), Gaps = 1/94 (1%)

Query: 1   NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFT 60
           NGFVEC ++ CPN EGC+ LL+ ++ D CC KC GC+ +GV+  S +EWT+ ++PC IFT
Sbjct: 159 NGFVECLKQQCPNIEGCYALLDPRD-DECCHKCTGCMQNGVYHASDTEWTEENDPCLIFT 217

Query: 61  CKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPG 94
           CKAGV+TE++++CY PC HP     GQCCP C G
Sbjct: 218 CKAGVITESKLRCYTPCSHPKAAPSGQCCPICEG 251

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175592|gb|EFN65502.1| BMP-binding endothelial regulator protein [Camponotus floridanus]

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 69/94 (73%), Gaps = 2/94 (2%)

Query: 1   NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFT 60
           NGFVEC ++ CPN EGC+ LLE ++ D CC KC GC+H+G +  S +EWT+ D PC IFT
Sbjct: 68  NGFVECLKRQCPNVEGCYALLEPRD-DECCYKCTGCIHNGTYHASETEWTETD-PCLIFT 125

Query: 61  CKAGVVTETEMQCYAPCKHPTPPGPGQCCPTCPG 94
           CKAG++T  +++CY PC +P P   GQCCPTC G
Sbjct: 126 CKAGIITRAKLECYTPCSNPKPAPRGQCCPTCDG 159

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
FB|FBgn0000395	751	cv-2 "crossveinless 2" [Drosop	0.474	0.098	0.493	1.3e-16
ZFIN|ZDB-GENE-030219-146	668	bmper "BMP binding endothelial	0.493	0.115	0.387	7.3e-12
MGI|MGI:1920480	685	Bmper "BMP-binding endothelial	0.493	0.112	0.387	7.6e-12
UNIPROTKB|A0JNC8	685	BMPER "BMP binding endothelial	0.493	0.112	0.375	2e-11
UNIPROTKB|I3LLQ4	628	BMPER "Uncharacterized protein	0.493	0.122	0.362	1.3e-10
UNIPROTKB|Q8N8U9	685	BMPER "BMP-binding endothelial	0.493	0.112	0.362	1.9e-10
UNIPROTKB|F1NEL8	677	BMPER "Uncharacterized protein	0.493	0.113	0.362	2.4e-10
UNIPROTKB|Q6ZWJ8	1503	KCP "Kielin/chordin-like prote	0.467	0.048	0.394	5.2e-10
RGD|1561119	1259	Kcp "kielin/chordin-like prote	0.467	0.057	0.394	4.9e-09
MGI|MGI:2141640	1550	Kcp "kielin/chordin-like prote	0.467	0.047	0.342	7.9e-09

FB|FBgn0000395 cv-2 "crossveinless 2" [Drosophila melanogaster (taxid:7227)]

 Score = 216 (81.1 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 38/77 (49%), Positives = 51/77 (66%)

Query:     1 NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFT 60
             NGFV C R +CP    C+ +L+ K    CCR+C+GC   G+  ESGSEW DP++PC+ + 
Sbjct:    91 NGFVNC-RDTCPPVNDCY-ILD-KSNGTCCRRCKGCSFRGMSYESGSEWNDPEDPCKTYK 147

Query:    61 CKAGVVTETEMQCYAPC 77
             C A VVTET  +CY+ C
Sbjct:   148 CVATVVTETIQKCYSQC 164

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-030219-146 bmper "BMP binding endothelial regulator" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 7.3e-12, P = 7.3e-12
 Identities = 31/80 (38%), Positives = 42/80 (52%)

Query:     1 NGFVECNRKSC-PNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIF 59
             N   EC ++ C P  E C   L  K+   CC KC+GC+  G    S   W  P  PC  +
Sbjct:    60 NQKAECKQEKCAPLAEDC--ALVVKQTGACCEKCKGCLLKGTSYNSSHHWISPVKPCVTY 117

Query:    60 TCKAGVVTETEMQCYAPCKH 79
             +C+ GV+TE EM+C   CK+
Sbjct:   118 SCQEGVITEAEMRCVIHCKN 137

GO:0005515 "protein binding" evidence=IPI

GO:0030510 "regulation of BMP signaling pathway" evidence=IGI

GO:0005578 "proteinaceous extracellular matrix" evidence=IDA

GO:0050840 "extracellular matrix binding" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0001568 "blood vessel development" evidence=IMP

GO:0030097 "hemopoiesis" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IGI;IMP

GO:0043049 "otic placode formation" evidence=IGI

MGI|MGI:1920480 Bmper "BMP-binding endothelial regulator" [Mus musculus (taxid:10090)]

 Score = 171 (65.3 bits), Expect = 7.6e-12, P = 7.6e-12
 Identities = 31/80 (38%), Positives = 43/80 (53%)

Query:     1 NGFVECNRKSCPN-QEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIF 59
             N  V C R+ CP     C   L  K++  CC +C+GC H G    S  +W  P  PC + 
Sbjct:    74 NKEVTCKREKCPVLSRDC--ALAIKQRGACCERCKGCTHEGRTYNSSFKWQTPAEPCVLR 131

Query:    60 TCKAGVVTETEMQCYAPCKH 79
              C+ GVVTE+E++C   CK+
Sbjct:   132 QCQEGVVTESEVRCVVHCKN 151

GO:0002043 "blood vessel endothelial cell proliferation involved in sprouting angiogenesis" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IDA

GO:0005615 "extracellular space" evidence=ISO

GO:0010594 "regulation of endothelial cell migration" evidence=ISO

GO:0030514 "negative regulation of BMP signaling pathway" evidence=IDA

GO:0042118 "endothelial cell activation" evidence=ISO

GO:0048839 "inner ear development" evidence=IDA

GO:0060393 "regulation of pathway-restricted SMAD protein phosphorylation" evidence=ISO

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=ISO

UNIPROTKB|A0JNC8 BMPER "BMP binding endothelial regulator" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 30/80 (37%), Positives = 44/80 (55%)

Query:     1 NGFVECNRKSCPN-QEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIF 59
             N  V C R+ CP     C   L  K++  CC +C+GC + G    S  +W +P  PC + 
Sbjct:    74 NKEVTCKREKCPVLSRDC--ALAIKQRGACCERCKGCTYDGSTYNSSFKWQNPAEPCVLR 131

Query:    60 TCKAGVVTETEMQCYAPCKH 79
              C+ GVVTE+E++C   CK+
Sbjct:   132 QCQEGVVTESEVRCVVHCKN 151

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IEA

GO:0060393 "regulation of pathway-restricted SMAD protein phosphorylation" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0042118 "endothelial cell activation" evidence=IEA

GO:0030514 "negative regulation of BMP signaling pathway" evidence=IEA

GO:0010594 "regulation of endothelial cell migration" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0002043 "blood vessel endothelial cell proliferation involved in sprouting angiogenesis" evidence=IEA

GO:0001657 "ureteric bud development" evidence=IEA

UNIPROTKB|I3LLQ4 BMPER "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 29/80 (36%), Positives = 42/80 (52%)

Query:     1 NGFVECNRKSCPN-QEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIF 59
             N  V C R+ CP     C   L  K++  CC +C+GC + G    S  +W  P  PC + 
Sbjct:    17 NKEVTCKREKCPVLSRDC--ALAIKQRGACCERCKGCTYAGNTYNSSFKWQSPTEPCILR 74

Query:    60 TCKAGVVTETEMQCYAPCKH 79
              C+ GVVTE+ ++C   CK+
Sbjct:    75 QCQEGVVTESAVRCVVHCKN 94

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IEA

GO:0060393 "regulation of pathway-restricted SMAD protein phosphorylation" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0042118 "endothelial cell activation" evidence=IEA

GO:0030514 "negative regulation of BMP signaling pathway" evidence=IEA

GO:0010594 "regulation of endothelial cell migration" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0002043 "blood vessel endothelial cell proliferation involved in sprouting angiogenesis" evidence=IEA

GO:0001657 "ureteric bud development" evidence=IEA

UNIPROTKB|Q8N8U9 BMPER "BMP-binding endothelial regulator protein" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 29/80 (36%), Positives = 42/80 (52%)

Query:     1 NGFVECNRKSCPN-QEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIF 59
             N  V C R+ CP     C   L  K++  CC +C+GC + G    S  +W  P  PC + 
Sbjct:    74 NKEVTCKREKCPVLSRDC--ALAIKQRGACCEQCKGCTYEGNTYNSSFKWQSPAEPCVLR 131

Query:    60 TCKAGVVTETEMQCYAPCKH 79
              C+ GVVTE+ ++C   CK+
Sbjct:   132 QCQEGVVTESGVRCVVHCKN 151

GO:0001657 "ureteric bud development" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0005615 "extracellular space" evidence=IDA

GO:0002043 "blood vessel endothelial cell proliferation involved in sprouting angiogenesis" evidence=IDA

GO:0010594 "regulation of endothelial cell migration" evidence=IDA

GO:0042118 "endothelial cell activation" evidence=IDA

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IDA

GO:0060393 "regulation of pathway-restricted SMAD protein phosphorylation" evidence=IDA

GO:0030514 "negative regulation of BMP signaling pathway" evidence=TAS

UNIPROTKB|F1NEL8 BMPER "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 157 (60.3 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 29/80 (36%), Positives = 41/80 (51%)

Query:     1 NGFVECNRKSCPN-QEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIF 59
             N  V C R+ CP   + C   L  K++  CC +C+ C   G    S   W  P NPC  +
Sbjct:    67 NKEVTCRREKCPLLSKEC--ALVIKQRGACCERCKDCTFGGKTYNSSMRWHLPSNPCITY 124

Query:    60 TCKAGVVTETEMQCYAPCKH 79
              C+ GV+ E+E+QC   CK+
Sbjct:   125 QCQEGVIIESEVQCVVHCKN 144

GO:0001657 "ureteric bud development" evidence=IEA

GO:0002043 "blood vessel endothelial cell proliferation involved in sprouting angiogenesis" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0010594 "regulation of endothelial cell migration" evidence=IEA

GO:0030514 "negative regulation of BMP signaling pathway" evidence=IEA

GO:0042118 "endothelial cell activation" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0060393 "regulation of pathway-restricted SMAD protein phosphorylation" evidence=IEA

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IEA

UNIPROTKB|Q6ZWJ8 KCP "Kielin/chordin-like protein" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 30/76 (39%), Positives = 38/76 (50%)

Query:     2 GFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTC 61
             G V C R  CP    C   L+  E+  CC +C+GC+ HG     GS W  PD+ C    C
Sbjct:   865 GQVSCVRLQCPPLP-CK--LQVTERGSCCPRCRGCLAHGEEHPEGSRWVPPDSACSSCVC 921

Query:    62 KAGVVTETEMQCYAPC 77
               GVVT   +QC + C
Sbjct:   922 HEGVVTCARIQCISSC 937

GO:0005576 "extracellular region" evidence=IEA

RGD|1561119 Kcp "kielin/chordin-like protein" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 30/76 (39%), Positives = 37/76 (48%)

Query:     2 GFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTC 61
             G V C R  CP    C  LL+A E   CC +C GC   G     GS W   D+PC    C
Sbjct:   933 GQVSCMRLQCPPLP-C--LLQATEPGTCCPRCTGCRVRGEEHPEGSSWVPADSPCSSCMC 989

Query:    62 KAGVVTETEMQCYAPC 77
               G+VT  ++QC + C
Sbjct:   990 HKGIVTCAQVQCVSAC 1005

GO:0005615 "extracellular space" evidence=ISO

GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISO

MGI|MGI:2141640 Kcp "kielin/chordin-like protein" [Mus musculus (taxid:10090)]

 Score = 147 (56.8 bits), Expect = 7.9e-09, P = 7.9e-09
 Identities = 26/76 (34%), Positives = 37/76 (48%)

Query:     2 GFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQGCVHHGVFRESGSEWTDPDNPCRIFTC 61
             G V C R  CP+    H++ E      CC +C GC+  G     GS W   D+PC    C
Sbjct:   929 GQVSCTRLQCPSLPCLHQVTEPGT---CCPRCTGCLARGEEHPEGSSWVPADSPCSSCMC 985

Query:    62 KAGVVTETEMQCYAPC 77
               G++T  ++QC + C
Sbjct:   986 HKGIITCAQVQCVSAC 1001

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=IDA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	156
pfam00093	57	pfam00093, VWC, von Willebrand factor type C domai	5e-04

>gnl|CDD|215712 pfam00093, VWC, von Willebrand factor type C domain

 Score = 35.9 bits (83), Expect = 5e-04
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 36 CVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQC-YAPCKHPTP-PGPGQCCPTC 92
          CV +GV  E+G  W  PD  C I TC  G V   ++ C    C  P     PG+CCP C
Sbjct: 1  CVQNGVVYENGETWK-PD-LCTICTCDDGKVLCDKITCPPLDCPSPRLEIPPGECCPVC 57

The high cutoff was used to prevent overlap with pfam00094. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PF00093	57	VWC: von Willebrand factor type C domain; InterPro	99.46
smart00214	59	VWC von Willebrand factor (vWF) type C domain.	99.41
PF00093	57	VWC: von Willebrand factor type C domain; InterPro	97.86
smart00215	67	VWC_out von Willebrand factor (vWF) type C domain.	97.85
PF12714	56	TILa: TILa domain	97.47
smart00214	59	VWC von Willebrand factor (vWF) type C domain.	97.25
PF05375	39	Pacifastin_I: Pacifastin inhibitor (LCMII); InterP	91.92
cd00061	43	FN1 Fibronectin type 1 domain, approximately 40 re	89.48
PF05825	94	PSP94: Beta-microseminoprotein (PSP-94); InterPro:	88.73
KOG1544|consensus	470		86.7
PF15430	65	SVWC: Single domain von Willebrand factor type C	85.59
smart00215	67	VWC_out von Willebrand factor (vWF) type C domain.	85.34
PF14828	437	Amnionless: Amnionless	84.38
smart00058	45	FN1 Fibronectin type 1 domain. One of three types	82.16
PF14828	437	Amnionless: Amnionless	81.2

>PF00093 VWC: von Willebrand factor type C domain; InterPro: IPR001007 The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]

Probab=99.46  E-value=6.5e-14  Score=90.77  Aligned_cols=55  Identities=36%  Similarity=0.996  Sum_probs=34.5

Q ss_pred             cccCCEEecCCCeEeCCCCCceEEEecCCceEEEeeecC-CCCCCCC-CCCCCCCCCCC
Q psy11988         36 CVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCY-APCKHPT-PPGPGQCCPTC   92 (156)
Q Consensus        36 C~~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~~~Cp-~~C~~~~-~~~pG~CCp~C   92 (156)
                      |.++|++|.+|++|++  ++|++|+|.+|.|.|.++.|| ++|+.+. +..+|+|||+|
T Consensus         1 C~~~g~~y~~g~~w~~--~~C~~C~C~~G~v~C~~~~Cp~~~C~~~~~~~~~g~CCp~C   57 (57)
T PF00093_consen    1 CSFNGRVYQNGESWHP--DPCTTCTCQDGEVQCSRIQCPPLDCPNPELVKPPGECCPVC   57 (57)
T ss_dssp             EESSS-EE-SS-EE-S---SSEEEEEETTEEEEEE---S-SS-S-------SS-S--S-
T ss_pred             CeeCCEEeCCCCEECC--CCCcEeEecCCEEEEcCCCCcCCCCCCCceecCCCCcCCCC
Confidence            6899999999999999  679999999999999999999 8999983 38899999987

Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. The domain is named after the von Willebrand factor (VWF) type C repeat which is found in multidomain protein/multifunctional proteins involved in maintaining homeostasis [, ]. For the von Willebrand factor the duplicated VWFC domain is thought to participate in oligomerization, but not in the initial dimerization step []. The presence of this region in a number of other complex-forming proteins points to the possible involvment of the VWFC domain in complex formation.; GO: 0005515 protein binding; PDB: 1U5M_A.

>smart00214 VWC von Willebrand factor (vWF) type C domain

Probab=99.41  E-value=5e-13  Score=87.12  Aligned_cols=55  Identities=40%  Similarity=1.044  Sum_probs=50.5

Q ss_pred             cccCCEEecCCCeEeCCCCCceEEEecCCc-eEEEeeecC-C-CCCCCC-CCCCCCCCCCC
Q psy11988         36 CVHHGVFRESGSEWTDPDNPCRIFTCKAGV-VTETEMQCY-A-PCKHPT-PPGPGQCCPTC   92 (156)
Q Consensus        36 C~~~g~~y~~Ge~w~~~~d~C~~C~C~~G~-v~C~~~~Cp-~-~C~~~~-~~~pG~CCp~C   92 (156)
                      |.|+|+.|.+|++|++  |+|++|+|.+|. |.|.++.|| . .|+++. +..+|+|||+|
T Consensus         1 C~~~g~~y~~G~~W~~--~~C~~C~C~~g~~v~C~~~~Cp~~~~C~~~~~~~~~g~CCp~C   59 (59)
T smart00214        1 CVHNGEVYNDGETWKP--DPCQICTCLDGETVLCDPVECPPPPDCPNPERVKPPGECCPRC   59 (59)
T ss_pred             CccCCEEeCCCCEECC--CCCeECCcCCCCEEEeeeecCCCCCCCCCCcccCCCCCcCCCC
Confidence            7899999999999998  789999999999 999999999 4 799886 47899999987

>PF00093 VWC: von Willebrand factor type C domain; InterPro: IPR001007 The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]

Probab=97.86  E-value=8.4e-06  Score=52.52  Aligned_cols=32  Identities=34%  Similarity=0.845  Sum_probs=14.8

Q ss_pred             CCeEEeeccCCCCCCCCCcccccccCCCcCCCC
Q psy11988          1 NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKC   33 (156)
Q Consensus         1 ~G~v~C~~~~Cp~~~~C~~~v~~~~~g~CCP~C   33 (156)
                      +|.|+|.++.||+++ |+++.+.+.+|+|||+|
T Consensus        26 ~G~v~C~~~~Cp~~~-C~~~~~~~~~g~CCp~C   57 (57)
T PF00093_consen   26 DGEVQCSRIQCPPLD-CPNPELVKPPGECCPVC   57 (57)
T ss_dssp             TTEEEEEE---S-SS--S-------SS-S--S-
T ss_pred             CCEEEEcCCCCcCCC-CCCCceecCCCCcCCCC
Confidence            699999999999986 99992228999999987

Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. The domain is named after the von Willebrand factor (VWF) type C repeat which is found in multidomain protein/multifunctional proteins involved in maintaining homeostasis [, ]. For the von Willebrand factor the duplicated VWFC domain is thought to participate in oligomerization, but not in the initial dimerization step []. The presence of this region in a number of other complex-forming proteins points to the possible involvment of the VWFC domain in complex formation.; GO: 0005515 protein binding; PDB: 1U5M_A.

>smart00215 VWC_out von Willebrand factor (vWF) type C domain

Probab=97.85  E-value=1.1e-05  Score=54.15  Aligned_cols=40  Identities=33%  Similarity=0.830  Sum_probs=35.6

Q ss_pred             cccCCEEecCCCeEeCCCCCceEEEecCCceEEEeeecC-CCCC
Q psy11988         36 CVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCY-APCK   78 (156)
Q Consensus        36 C~~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~~~Cp-~~C~   78 (156)
                      |.++|+.|.+|++|.   |.|.+|+|.+|.+.|+++.|+ .+|.
T Consensus         1 C~~~G~~y~~g~~w~---d~Cn~CtC~~G~v~Ct~~~C~~~~c~   41 (67)
T smart00215        1 CYNNGSYYPPGAKWD---DDCNRCTCLNGRVSCTKVWCGPKPCL   41 (67)
T ss_pred             CeECCEEcCCCCccc---cCCCCCEecCCCEEecCCcCCCchhh
Confidence            689999999999997   469999999999999999998 4553

>PF12714 TILa: TILa domain

Probab=97.47  E-value=0.00019  Score=46.28  Aligned_cols=38  Identities=29%  Similarity=0.680  Sum_probs=33.5

Q ss_pred             ccc-cCCEEecCCCeEeCCCCCce-EEEe-cCCceEEEeeecC
Q psy11988         35 GCV-HHGVFRESGSEWTDPDNPCR-IFTC-KAGVVTETEMQCY   74 (156)
Q Consensus        35 ~C~-~~g~~y~~Ge~w~~~~d~C~-~C~C-~~G~v~C~~~~Cp   74 (156)
                      +|+ ++|+.|..||+|..  +.|+ .|+| .+|.|.|....|+
T Consensus         1 GC~d~~G~yy~~Ge~~~~--~~C~~~C~C~~~g~v~C~~~~C~   41 (56)
T PF12714_consen    1 GCTDYNGRYYPPGESWWT--DDCTQRCTCQPNGQVQCQPSSCP   41 (56)
T ss_pred             CCcCcCCEEECCCCEEeC--CCCCEeEEEcCCCeEEEeCCCCC
Confidence            588 99999999999998  4466 7999 6899999999988

>smart00214 VWC von Willebrand factor (vWF) type C domain

Probab=97.25  E-value=0.00029  Score=45.52  Aligned_cols=33  Identities=30%  Similarity=0.795  Sum_probs=27.0

Q ss_pred             CCe-EEeeccCCCCCCCCCcccccccCCCcCCCC
Q psy11988          1 NGF-VECNRKSCPNQEGCHKLLEAKEKDGCCRKC   33 (156)
Q Consensus         1 ~G~-v~C~~~~Cp~~~~C~~~v~~~~~g~CCP~C   33 (156)
                      +|. |+|.++.||++.+|++++..+.+|+|||+|
T Consensus        26 ~g~~v~C~~~~Cp~~~~C~~~~~~~~~g~CCp~C   59 (59)
T smart00214       26 DGETVLCDPVECPPPPDCPNPERVKPPGECCPRC   59 (59)
T ss_pred             CCCEEEeeeecCCCCCCCCCCcccCCCCCcCCCC
Confidence            577 999999999863499876446899999987

>PF05375 Pacifastin_I: Pacifastin inhibitor (LCMII); InterPro: IPR008037 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=91.92  E-value=0.24  Score=29.69  Aligned_cols=28  Identities=29%  Similarity=0.552  Sum_probs=23.2

Q ss_pred             cCCCeEeCCCCCceEEEec-CCceEEEeeecC
Q psy11988         44 ESGSEWTDPDNPCRIFTCK-AGVVTETEMQCY   74 (156)
Q Consensus        44 ~~Ge~w~~~~d~C~~C~C~-~G~v~C~~~~Cp   74 (156)
                      .+|++|..   .|..|+|. +|...|.++.|+
T Consensus         3 ~pG~~~k~---dCN~C~C~~~G~~~CT~~~C~   31 (39)
T PF05375_consen    3 TPGSTFKK---DCNTCTCSSDGKWACTRKACP   31 (39)
T ss_dssp             -TTTEEEE---TTEEEEEBTTSSEEEE-SSSS
T ss_pred             CCCCeeeC---CCCCCCCCCCCcCccCcccCc
Confidence            36888886   39999999 999999999997

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of serine protease inhibitors belong to MEROPS inhibitor family I19, clan IW. They inhibit chymotrpsin, a peptidase belong to the S1 family (IPR001254 from INTERPRO) []. They were first isolated from Locusta migratoria migratoria(migratory locust). These were HI, LMCI-1 (PMP-D2) and LMCI-2 (PMP-C) [, , ]; five additional members SGPI-1 to 5 were identified in Schistocerca gregaria (desert locust) [, ], and a heterodimeric serine protease inhibitor (pacifastin) was isolated from the hemolymph of Pacifastacus leniusculus (Signal crayfish) []. Pacifastin is a 155kDa composed of two covalently linked subunits, which are separately encoded. The heavy chain of pacifastin (105 kDa) is related to transferrins, containing three transferrin lobes, two of which seem to be active for iron binding []. A number of the members of the transferrin family are also serine peptidases belong to MEROPS peptidase family S60 (IPR001156 from INTERPRO). The light chain of pacifastin (44 kDa) is the proteinase inhibitory subunit, and has nine cysteine-rich inhibitory domains that are homologous to each other. The locust inhibitors share a conserved array of six cysteine residues with the pacifastin light chain. The structure of members of this family reveal that they are comprised of a triple-stranded antiparallel beta-sheet connected by three disulphide bridges []. The biological function(s) of the locust inhibitors is (are) not fully understood. LMCI-1 and LMCI-2 were shown to inhibit the endogenous proteolytic activating cascade of prophenoloxidase []. Expression analysis shows that the genes encoding the SGPI precursors are differentially expressed in a time-, stage- and hormone-dependent manner.; GO: 0030414 peptidase inhibitor activity; PDB: 2VU8_I 1WO9_A 1GL1_K 1PMC_A 2XTT_A 2F91_B 1KJ0_A 1GL0_I 1KGM_A 3TVJ_I.

>cd00061 FN1 Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges

Probab=89.48  E-value=0.8  Score=27.95  Aligned_cols=35  Identities=29%  Similarity=0.591  Sum_probs=26.8

Q ss_pred             cccC--CEEecCCCeEeCCC-CCceEEEecC--CceEEEe
Q psy11988         36 CVHH--GVFRESGSEWTDPD-NPCRIFTCKA--GVVTETE   70 (156)
Q Consensus        36 C~~~--g~~y~~Ge~w~~~~-d~C~~C~C~~--G~v~C~~   70 (156)
                      |.-+  ++.|..||+|.... ..-..|+|..  |.+.|.+
T Consensus         3 C~d~~t~~~Y~ige~W~r~~~~~~~~C~C~G~~G~~~C~~   42 (43)
T cd00061           3 CFDPQTGVFYRVGETWERPSEGHVLQCTCLGNRGEARCDP   42 (43)
T ss_pred             CCcCCcccEEeCCCEEEeecCCeEEEEEEeCCCCceEEee
Confidence            5544  89999999996542 2456899998  9998875

FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin, usually exists as a dimer in plasma and as an insoluble multimer in extracellular matrices. Dimers of nearly identical subunits are linked by a disulfide bond close to their C-terminus. FN1 domains also found in coagulation factor XII, HGF activator, and tissue-type plasminogen activator. In tissue plasminogen activator, FN1 domains may form functional fibrin-binding units with EGF-like domains C-terminal to FN1.

>PF05825 PSP94: Beta-microseminoprotein (PSP-94); InterPro: IPR008735 This family consists of the mammalian specific protein beta-microseminoprotein

Probab=88.73  E-value=0.53  Score=33.52  Aligned_cols=34  Identities=18%  Similarity=0.453  Sum_probs=29.0

Q ss_pred             ccc-cCCEEecCCCeEeCCCCCceEEEecCCceEEEe
Q psy11988         35 GCV-HHGVFRESGSEWTDPDNPCRIFTCKAGVVTETE   70 (156)
Q Consensus        35 ~C~-~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~   70 (156)
                      +|. .+|+.|.-|++|..  +.|..|+|....+.|-.
T Consensus        17 ~C~D~dG~~h~l~S~W~T--~~C~~C~C~~~Gi~CC~   51 (94)
T PF05825_consen   17 ECKDWDGKKHPLNSTWKT--DDCEECSCSEDGISCCS   51 (94)
T ss_dssp             CEEETTTEEEETTEEEEE--TTSEEEEEESSEEEEEE
T ss_pred             ccEeCCCcEEeCCCeECC--CCCcEEEecCCceEecc
Confidence            455 78999999999998  67999999987787753

Prostatic secretory protein of 94 amino acids (PSP94), also called beta-microseminoprotein, is a small, nonglycosylated protein, rich in cysteine residues. It was first isolated as a major protein from Homo sapiens seminal plasma []. The exact function of this protein is unknown.; PDB: 2IZ4_A 1XHH_A 3IX0_C 2IZ3_A.

>KOG1544|consensus

Probab=86.70  E-value=0.63  Score=40.54  Aligned_cols=47  Identities=26%  Similarity=0.685  Sum_probs=39.4

Q ss_pred             cCCCcCCC----CC----------ccccCCEEecCCCeEeCCCCCceEEEecCCceEEEeeecC
Q psy11988         25 EKDGCCRK----CQ----------GCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCY   74 (156)
Q Consensus        25 ~~g~CCP~----C~----------~C~~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~~~Cp   74 (156)
                      ....|||.    |.          +|..+|+.|.+|++..   +.|..|+|+++.-.|....|-
T Consensus        87 ~~sDCCPDf~~fCRg~pp~~Qp~~gc~~gg~~y~~G~t~~---~NCn~CTC~n~qWKCdq~~CL  147 (470)
T KOG1544|consen   87 TVSDCCPDFWDFCRGVPPPFQPIQGCMHGGRIYPVGGTYW---DNCNRCTCQNRQWKCDQEPCL  147 (470)
T ss_pred             CCcccCcCHHHHhcCCCCCCCChhhcccCceecccCCeee---ccccceeecCCceecCCceee
Confidence            34668886    63          5999999999999865   469999999999999988875

>PF15430 SVWC: Single domain von Willebrand factor type C

Probab=85.59  E-value=2.1  Score=27.22  Aligned_cols=38  Identities=29%  Similarity=0.496  Sum_probs=29.4

Q ss_pred             cccCCEEecCCCeEeCCCCCceEEEecCCceEEEeeecC
Q psy11988         36 CVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCY   74 (156)
Q Consensus        36 C~~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~~~Cp   74 (156)
                      |.|+|..+.+|+.|... ++|.+=+|..+.-.-....|+
T Consensus         1 C~y~~~~~~~g~~~~~~-~pC~~~~C~~~~~~v~v~~C~   38 (65)
T PF15430_consen    1 CYYNGRTIPSGESYNPE-EPCERWTCDASDGYVTVEGCP   38 (65)
T ss_pred             CEECCEEcCCCcEecCC-CCCceEEEECCCCEEEEEeCC
Confidence            78999999999999864 789999999444333456666

>smart00215 VWC_out von Willebrand factor (vWF) type C domain

Probab=85.34  E-value=0.45  Score=31.79  Aligned_cols=33  Identities=12%  Similarity=-0.022  Sum_probs=22.4

Q ss_pred             CCCCCEEecCCceecCC----------CCCCceeecCchhhHH
Q psy11988         95 KRPYGLLYVAFGLLNAT----------FGPPHVASGLLNVAFA  127 (156)
Q Consensus        95 C~~~g~~y~~G~~~~~~----------~~c~~~~c~~~~~~~~  127 (156)
                      |.++|++|++|+.|..+          ..|..+.|++.++.|-
T Consensus         1 C~~~G~~y~~g~~w~d~Cn~CtC~~G~v~Ct~~~C~~~~c~l~   43 (67)
T smart00215        1 CYNNGSYYPPGAKWDDDCNRCTCLNGRVSCTKVWCGPKPCLLH   43 (67)
T ss_pred             CeECCEEcCCCCccccCCCCCEecCCCEEecCCcCCCchhhcc
Confidence            57889999999999753          2233344666666554

>PF14828 Amnionless: Amnionless

Probab=84.38  E-value=0.45  Score=42.45  Aligned_cols=28  Identities=29%  Similarity=0.895  Sum_probs=23.8

Q ss_pred             Eeecc--CCCCCCCCCcccccccCCCcCCCCCc
Q psy11988          5 ECNRK--SCPNQEGCHKLLEAKEKDGCCRKCQG   35 (156)
Q Consensus         5 ~C~~~--~Cp~~~~C~~~v~~~~~g~CCP~C~~   35 (156)
                      .|...  +|+..+ |..|+  +..|+|||.|-.
T Consensus       205 ICs~v~~~C~~~~-C~~pl--~P~GhCC~iCGa  234 (437)
T PF14828_consen  205 ICSNVLQRCPKPH-CRSPL--RPEGHCCPICGA  234 (437)
T ss_pred             hhHHhhCcCCCCc-cCCCC--CCCCCchhhcce
Confidence            46666  999986 99999  899999999954

>smart00058 FN1 Fibronectin type 1 domain

Probab=82.16  E-value=3.3  Score=25.49  Aligned_cols=32  Identities=19%  Similarity=0.281  Sum_probs=24.7

Q ss_pred             CEEecCCCeEeCCCC--CceEEEecCCc---eEEEee
Q psy11988         40 GVFRESGSEWTDPDN--PCRIFTCKAGV---VTETEM   71 (156)
Q Consensus        40 g~~y~~Ge~w~~~~d--~C~~C~C~~G~---v~C~~~   71 (156)
                      ++.|..||+|....+  .-..|+|..+.   +.|.+.
T Consensus         7 ~~~Y~ige~W~r~~~~g~~~~C~C~G~g~G~~~C~~~   43 (45)
T smart00058        7 GTTYRIGDTWERPYEGGHVLQCTCLGNGRGEWKCDPV   43 (45)
T ss_pred             ccEEecCCEEEeecCCCcEEEeEEcCCCceEEEEEec
Confidence            789999999966433  46789999655   888864

One of three types of internal repeat within the plasma protein, fibronectin. Found also in coagulation factor XII, HGF activator and tissue-type plasminogen activator. In t-PA and fibronectin, this domain type contributes to fibrin-binding.

>PF14828 Amnionless: Amnionless

Probab=81.20  E-value=0.56  Score=41.86  Aligned_cols=36  Identities=25%  Similarity=0.693  Sum_probs=29.5

Q ss_pred             eEEEecCCc---eEEEee--ecC-CCCCCCCCCCCCCCCCCCC
Q psy11988         57 RIFTCKAGV---VTETEM--QCY-APCKHPTPPGPGQCCPTCP   93 (156)
Q Consensus        57 ~~C~C~~G~---v~C~~~--~Cp-~~C~~~~~~~pG~CCp~C~   93 (156)
                      .-|.|.+..   ..|..+  +|+ ..|.+|. .+.|+||++|-
T Consensus       192 ~gC~C~n~~~l~~ICs~v~~~C~~~~C~~pl-~P~GhCC~iCG  233 (437)
T PF14828_consen  192 SGCPCGNDEVLEWICSNVLQRCPKPHCRSPL-RPEGHCCPICG  233 (437)
T ss_pred             ccCccCcccchhhhhHHhhCcCCCCccCCCC-CCCCCchhhcc
Confidence            478887644   567777  899 7999998 89999999994

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
1u5m_A	73	Cartilage, alpha 1 type II collagen isoform 1; dis	1e-09
3bk3_C	67	Crossveinless 2, bone morphogenetic protein 2; TGF	2e-04

>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2 Length = 73

 Score = 50.7 bits (121), Expect = 1e-09
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 30 CRKCQGCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQC--YAPCKHPTPPGPGQ 87
           ++   CV  G        W     PCRI  C  G V   ++ C     C  P  P  G+
Sbjct: 4  FQEAGSCVQDGQRYNDKDVWKP--EPCRICVCDTGTVLCDDIICEDVKDCLSPEIP-FGE 60

Query: 88 CCPTCP 93
          CCP CP
Sbjct: 61 CCPICP 66

>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio} Length = 67

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 1  NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQG 35
          N   EC ++ C        L+  K+   CC KC+G
Sbjct: 34 NQKAECKQEKCAPLAEDCALVV-KQTGACCEKCKG 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
1u5m_A	73	Cartilage, alpha 1 type II collagen isoform 1; dis	99.47
3bk3_C	67	Crossveinless 2, bone morphogenetic protein 2; TGF	99.06
3bk3_C	67	Crossveinless 2, bone morphogenetic protein 2; TGF	97.84
1u5m_A	73	Cartilage, alpha 1 type II collagen isoform 1; dis	97.8
3ejh_A	93	Fibronectin; fibronectin, protein complex, collage	93.73
1o9a_A	93	Fibronectin; cell adhesion/complex, HOST-pathogen	92.39
2xtt_A	36	Protease inhibitor SGPI-1; hydrolase, catalytic me	92.09
1xhh_A	91	Beta-microseminoprotein; beta srands, novel fold,	91.41
3ix0_A	94	Beta-microseminoprotein; beta sheet, greek KEY mot	90.75
1wo9_A	35	HI-1, trypsin inhibitor; hydrolase inhibitor; NMR	83.27
2cg7_A	90	Fibronectin; signaling protein, 2F13F1, acute phas	83.26
1gl0_I	35	Protease inhibitor LCMI I; hydrolase/inhibitor, co	82.01
3tvj_I	38	Protease inhibitor SGPI-2; in vitro evolution, spe	80.23

>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2

Probab=99.47  E-value=7.5e-14  Score=93.97  Aligned_cols=57  Identities=35%  Similarity=0.899  Sum_probs=53.7

Q ss_pred             ccccCCEEecCCCeEeCCCCCceEEEecCCceEEEeeecC-C-CCCCCCCCCCCCCCCCCCC
Q psy11988         35 GCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCY-A-PCKHPTPPGPGQCCPTCPG   94 (156)
Q Consensus        35 ~C~~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~~~Cp-~-~C~~~~~~~pG~CCp~C~~   94 (156)
                      +|.++|++|.+|++|++  ++|++|+|.+|.+.|.++.|| + +|+++. ..+|+|||+|+.
T Consensus         9 ~C~~~G~~y~~ge~W~~--d~C~~C~C~~G~v~C~~~~Cp~~~~C~~p~-~~~GeCCPvC~~   67 (73)
T 1u5m_A            9 SCVQDGQRYNDKDVWKP--EPCRICVCDTGTVLCDDIICEDVKDCLSPE-IPFGECCPICPA   67 (73)
T ss_dssp             CEESSSCEECSSCEECS--CSSEEEEEETTEEEEEECCCSCCSSCSCCC-CCSSCSCCSCCS
T ss_pred             CeeECCEEEcCCCEECC--cCcCceECCCCcEEeccccCCCccCCCCCc-ccCCCcCCCCCC
Confidence            69999999999999998  789999999999999999999 6 999988 889999999973

>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}

Probab=99.06  E-value=1.1e-10  Score=77.34  Aligned_cols=55  Identities=25%  Similarity=0.572  Sum_probs=48.5

Q ss_pred             ccccCCEEecCCCeEeCCCCCceEEEecCCceEEEeeecC-CC--CCCCCCCCCCCCCCCCC
Q psy11988         35 GCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCY-AP--CKHPTPPGPGQCCPTCP   93 (156)
Q Consensus        35 ~C~~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~~~Cp-~~--C~~~~~~~pG~CCp~C~   93 (156)
                      .|.++|++|.++. |..  ++|++|+|++|.+.|.++.|| ++  |+.+. ..+|+|||+|.
T Consensus         9 ~C~~eGe~~~~~~-~~~--~~C~~C~C~~G~v~C~~~~CP~l~~~C~~~~-~~~g~CCp~C~   66 (67)
T 3bk3_C            9 SCENEGEVLHIPN-ITD--NPCISCVCLNQKAECKQEKCAPLAEDCALVV-KQTGACCEKCK   66 (67)
T ss_dssp             BCSSTTCEECCTT-TTT--STTEEEEECSSBEEEEECCCCCCCTTCCCEE-CCTTCSSCEEC
T ss_pred             ceEECCEEEeCCC-ccC--CCcceeEecCCceEEccccCCCCccccCCcc-cCCCCcCcCcC
Confidence            5899999998764 665  789999999999999999999 67  98876 78999999985

>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}

Probab=97.84  E-value=8.7e-06  Score=53.65  Aligned_cols=33  Identities=33%  Similarity=0.926  Sum_probs=28.7

Q ss_pred             CCeEEeeccCCCCCC-CCCcccccccCCCcCCCCCc
Q psy11988          1 NGFVECNRKSCPNQE-GCHKLLEAKEKDGCCRKCQG   35 (156)
Q Consensus         1 ~G~v~C~~~~Cp~~~-~C~~~v~~~~~g~CCP~C~~   35 (156)
                      +|.|.|.++.||+++ .|++++  +.+|+|||+|.+
T Consensus        34 ~G~v~C~~~~CP~l~~~C~~~~--~~~g~CCp~C~~   67 (67)
T 3bk3_C           34 NQKAECKQEKCAPLAEDCALVV--KQTGACCEKCKG   67 (67)
T ss_dssp             SSBEEEEECCCCCCCTTCCCEE--CCTTCSSCEECC
T ss_pred             CCceEEccccCCCCccccCCcc--cCCCCcCcCcCc
Confidence            699999999999984 299888  889999999863

>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2

Probab=97.80  E-value=1.7e-05  Score=52.79  Aligned_cols=33  Identities=24%  Similarity=0.584  Sum_probs=29.1

Q ss_pred             CCeEEeeccCCCCCCCCCcccccccCCCcCCCCCc
Q psy11988          1 NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQG   35 (156)
Q Consensus         1 ~G~v~C~~~~Cp~~~~C~~~v~~~~~g~CCP~C~~   35 (156)
                      +|.|.|.++.||.+.+|++++  +.+|+|||+|+.
T Consensus        35 ~G~v~C~~~~Cp~~~~C~~p~--~~~GeCCPvC~~   67 (73)
T 1u5m_A           35 TGTVLCDDIICEDVKDCLSPE--IPFGECCPICPA   67 (73)
T ss_dssp             TTEEEEEECCCSCCSSCSCCC--CCSSCSCCSCCS
T ss_pred             CCcEEeccccCCCccCCCCCc--ccCCCcCCCCCC
Confidence            699999999999982399998  899999999963

>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens} PDB: 3gxe_B*

Probab=93.73  E-value=0.087  Score=36.48  Aligned_cols=69  Identities=10%  Similarity=0.110  Sum_probs=48.0

Q ss_pred             ccccCCEEecCCCeEeCCCC--CceEEEec---CCceEEEeeecCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCCceec
Q psy11988         35 GCVHHGVFRESGSEWTDPDN--PCRIFTCK---AGVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLN  109 (156)
Q Consensus        35 ~C~~~g~~y~~Ge~w~~~~d--~C~~C~C~---~G~v~C~~~~Cp~~C~~~~~~~pG~CCp~C~~C~~~g~~y~~G~~~~  109 (156)
                      .|..+|..|..|++|....+  .=..|+|.   +|...|....   .|.++                ..+..|+-|++|.
T Consensus         2 ~C~~~g~~Y~VG~~w~k~~e~G~mm~CTC~G~GrG~wkC~~~d---~C~D~----------------~~g~~Y~IGetW~   62 (93)
T 3ejh_A            2 QCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPVD---QCQDS----------------ETGTFYQIGDSWE   62 (93)
T ss_dssp             EEEETTEEEETTEEEEEECTTSCEEEEEEEETTTTEEEEEECS---EEECT----------------TTCCEEETTCEEE
T ss_pred             ccEECCcEEecCCEEEecccCCCEEEeEEcCCCcccEEecCCc---cCCcc----------------CCCcEeecCCeEe
Confidence            48899999999999965432  34589998   3678888541   22221                3588999999998


Q ss_pred             CCCCCCceeecCc
Q psy11988        110 ATFGPPHVASGLL  122 (156)
Q Consensus       110 ~~~~c~~~~c~~~  122 (156)
                      ...+=..++|-.+
T Consensus        63 k~~~G~~~~CtC~   75 (93)
T 3ejh_A           63 KYVHGVRYQCYCY   75 (93)
T ss_dssp             ECCTTCCEEEEEE
T ss_pred             eccCCeEEEeEEE
Confidence            8655555555443

>1o9a_A Fibronectin; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1qgb_A

Probab=92.39  E-value=0.061  Score=37.27  Aligned_cols=68  Identities=15%  Similarity=0.177  Sum_probs=43.8

Q ss_pred             ccccCCEEecCCCeEeCCC-CCceEEEecCCc--eEEEeeecCCCCCCCCCCCCCCCCCCCCCCC--CCCEEecCCceec
Q psy11988         35 GCVHHGVFRESGSEWTDPD-NPCRIFTCKAGV--VTETEMQCYAPCKHPTPPGPGQCCPTCPGKR--PYGLLYVAFGLLN  109 (156)
Q Consensus        35 ~C~~~g~~y~~Ge~w~~~~-d~C~~C~C~~G~--v~C~~~~Cp~~C~~~~~~~pG~CCp~C~~C~--~~g~~y~~G~~~~  109 (156)
                      .|..+|+.|..|++|.... ..=..|+|..+.  ..|..+        |.   ..      +.|.  +.|+.|.-|++|.
T Consensus         4 ~C~d~G~~Y~iGeqWer~~~G~~l~CTC~G~g~G~~C~sk--------P~---ae------e~C~Dk~~G~~Y~VGetwe   66 (93)
T 1o9a_A            4 GCYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCESK--------PE---AE------ETCFDKYTGNTYRVGDTYE   66 (93)
T ss_dssp             SCBCSSCBCCTTCEEEEEETTEEEEEEECSSTTCEEEEEC--------CC---SS------CEEEETTTTEEEETTCBCC
T ss_pred             eEEcCCeEeecCCEEeeccCCCEEEEEEcCCCcceEecCC--------CC---cc------cccccCCCccEeecCCeEE
Confidence            5889999999999996532 334589997422  777641        11   01      1244  3689999999998


Q ss_pred             CCCCCCceee
Q psy11988        110 ATFGPPHVAS  119 (156)
Q Consensus       110 ~~~~c~~~~c  119 (156)
                      .+..=..++|
T Consensus        67 r~~~g~~~~C   76 (93)
T 1o9a_A           67 RPKDSMIWDC   76 (93)
T ss_dssp             EEETTEEECC
T ss_pred             eccCCeEEEE
Confidence            6533233333

>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A

Probab=92.09  E-value=0.15  Score=29.26  Aligned_cols=28  Identities=32%  Similarity=0.565  Sum_probs=24.1

Q ss_pred             cCCCeEeCCCCCceEEEec-CCceEEEeeecC
Q psy11988         44 ESGSEWTDPDNPCRIFTCK-AGVVTETEMQCY   74 (156)
Q Consensus        44 ~~Ge~w~~~~d~C~~C~C~-~G~v~C~~~~Cp   74 (156)
                      ..|++|..   .|.+|+|. +|.-.|.++.||
T Consensus         5 ~pG~~~~~---dCNtC~C~~~G~W~CT~~~Cp   33 (36)
T 2xtt_A            5 EPGQTKKQ---DCNTCRCGSDGVWACTRMGCP   33 (36)
T ss_dssp             CTTCEEEE---TTEEEEECTTSCEEEECCCCC
T ss_pred             CCCCEEEC---CCCccCCCCCCEEeeeCCcCC
Confidence            46778775   49999999 999999999998

>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A

Probab=91.41  E-value=0.21  Score=34.48  Aligned_cols=34  Identities=24%  Similarity=0.506  Sum_probs=30.2

Q ss_pred             ccc-cCCEEecCCCeEeCCCCCceEEEecCCceEEEe
Q psy11988         35 GCV-HHGVFRESGSEWTDPDNPCRIFTCKAGVVTETE   70 (156)
Q Consensus        35 ~C~-~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~   70 (156)
                      +|. ++|+.+.-|++|..  +.|..|+|.+..+.|-.
T Consensus        14 ~C~D~~G~kh~l~s~W~T--~dC~~C~C~~~Gi~CC~   48 (91)
T 1xhh_A           14 ECQDLKGVSHPLNSVWKT--KDCEECTCGQDAISCCN   48 (91)
T ss_dssp             EEEETTTEEEECCCCEEC--SSSEEEEECSSEEEEEE
T ss_pred             CCCcCCCcEEeCCCeECC--CCceEeEecCCCcEeec
Confidence            477 99999999999998  77999999988887764

>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A

Probab=90.75  E-value=0.27  Score=34.05  Aligned_cols=35  Identities=23%  Similarity=0.512  Sum_probs=29.4

Q ss_pred             Cccc-cCCEEecCCCeEeCCCCCceEEEecCCceEEEe
Q psy11988         34 QGCV-HHGVFRESGSEWTDPDNPCRIFTCKAGVVTETE   70 (156)
Q Consensus        34 ~~C~-~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~   70 (156)
                      .+|. .+|+.|.-|++|..  +.|..|+|....+.|-.
T Consensus        16 ~~C~D~dG~~h~l~S~W~T--~~C~~C~C~~~Gi~CC~   51 (94)
T 3ix0_A           16 RKCMDLKGNKHPINSEWQT--DNCETCTCYETEISCCT   51 (94)
T ss_dssp             -CEECTTSCEECTTCEEEC--TTSEEEEECSSEEEEEE
T ss_pred             CcCCCCCCCEEeCCCEECC--CCCcEeEecCCCceecc
Confidence            4687 79999999999998  67999999877777664

>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1

Probab=83.27  E-value=0.84  Score=25.84  Aligned_cols=28  Identities=25%  Similarity=0.512  Sum_probs=23.1

Q ss_pred             cCCCeEeCCCCCceEEEec-CCceEEEeeecC
Q psy11988         44 ESGSEWTDPDNPCRIFTCK-AGVVTETEMQCY   74 (156)
Q Consensus        44 ~~Ge~w~~~~d~C~~C~C~-~G~v~C~~~~Cp   74 (156)
                      .+|++++.   .|.+|+|. +|.-.|....|+
T Consensus         5 ~pG~ti~~---dCNtCtC~~~g~W~CT~~~C~   33 (35)
T 1wo9_A            5 TPGQTKKQ---DCNTCTCTPTGIWGCTRKACR   33 (35)
T ss_dssp             CTTCEEEE---TTEEEEECTTSCEECCCSSSS
T ss_pred             CCCCEEEC---CCCceECCCCCEEcCCCCCCC
Confidence            46778775   49999999 999999888776

>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A

Probab=83.26  E-value=0.93  Score=31.10  Aligned_cols=53  Identities=17%  Similarity=0.145  Sum_probs=39.3

Q ss_pred             cCCEEecCCCeEeCCCCC-ceEEEecC---CceEEEeeecCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCCceecCC
Q psy11988         38 HHGVFRESGSEWTDPDNP-CRIFTCKA---GVVTETEMQCYAPCKHPTPPGPGQCCPTCPGKRPYGLLYVAFGLLNAT  111 (156)
Q Consensus        38 ~~g~~y~~Ge~w~~~~d~-C~~C~C~~---G~v~C~~~~Cp~~C~~~~~~~pG~CCp~C~~C~~~g~~y~~G~~~~~~  111 (156)
                      ++|+.|..||+|....+. =..|+|..   |.+.|...         .            .|..+++.|+-|++|...
T Consensus         9 ~tg~sY~VGe~Wer~~~~~~~~CtC~G~G~G~~~C~s~---------~------------~C~~~g~~Y~IGetW~k~   65 (90)
T 2cg7_A            9 YTGNTYRVGDTYERPKDSMIWDCTCIGAGRGRISCTIA---------N------------RCHEGGQSYKIGDTWRRP   65 (90)
T ss_dssp             TTCCEEETTCEEEEEETTEEEEEEEEETTTTEEEEECT---------T------------EEEETTEEEETTCEEEEE
T ss_pred             CCCeEeecCCeeeEccCCcEEEEEEecCCCceEEECCc---------c------------eeeeCCcEEecCceEeec
Confidence            478999999999764433 33599983   78888821         1            356679999999999875

>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1

Probab=82.01  E-value=1.8  Score=24.63  Aligned_cols=28  Identities=32%  Similarity=0.510  Sum_probs=23.2

Q ss_pred             cCCCeEeCCCCCceEEEecC-CceEEEeeecC
Q psy11988         44 ESGSEWTDPDNPCRIFTCKA-GVVTETEMQCY   74 (156)
Q Consensus        44 ~~Ge~w~~~~d~C~~C~C~~-G~v~C~~~~Cp   74 (156)
                      ..|++|..   .|..|+|.+ |.-.|.++.|.
T Consensus         5 ~PG~~~k~---~CN~C~C~~~G~~~CTlk~C~   33 (35)
T 1gl0_I            5 TPGQVKQQ---DCNTCTCTPTGVWGCTLMGCQ   33 (35)
T ss_dssp             CTTCEEEC---SSCEEEECTTSCEEEECCCCC
T ss_pred             CCCccccc---CCCccCCCCCCeEEEEeeccc
Confidence            36888885   499999996 88999988885

>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A

Probab=80.23  E-value=1.7  Score=25.17  Aligned_cols=28  Identities=29%  Similarity=0.684  Sum_probs=22.0

Q ss_pred             cCCCeEeCCCCCceEEEecC-Cc-eEEEeeecC
Q psy11988         44 ESGSEWTDPDNPCRIFTCKA-GV-VTETEMQCY   74 (156)
Q Consensus        44 ~~Ge~w~~~~d~C~~C~C~~-G~-v~C~~~~Cp   74 (156)
                      ..|++|..   .|.+|+|.. |. ..|..+.||
T Consensus         8 ~Pg~tFk~---~CNtC~C~~dG~~a~CT~k~Cp   37 (38)
T 3tvj_I            8 EPGTTFKD---KCNTCRCGSDGKSAVCTKLWCN   37 (38)
T ss_dssp             CTTCEEEE---TTEEEEECTTSSCEEEECCEEC
T ss_pred             CCCCeeec---cCceeECCCCCceeEeecccCC
Confidence            45778885   599999984 55 589999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1u5ma_	73	g.27.1.2 (A:) Collagen alpha 1(II) chain precursor	5e-11

>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 5e-11
 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 30 CRKCQGCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQC--YAPCKHPTPPGPGQ 87
           ++   CV  G        W     PCRI  C  G V   ++ C     C  P  P  G+
Sbjct: 4  FQEAGSCVQDGQRYNDKDVWKP--EPCRICVCDTGTVLCDDIICEDVKDCLSPEIP-FGE 60

Query: 88 CCPTCPGKRP 97
          CCP CP    
Sbjct: 61 CCPICPADLA 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1u5ma_	73	Collagen alpha 1(II) chain precursor {Human (Homo	99.48
d1u5ma_	73	Collagen alpha 1(II) chain precursor {Human (Homo	97.92
d1o9aa1	44	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	91.29
d2cg7a1	43	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	91.0
d1e88a3	41	Fibronectin {Human (Homo sapiens) [TaxId: 9606]}	87.28

>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.1e-14  Score=94.20  Aligned_cols=58  Identities=34%  Similarity=0.878  Sum_probs=52.8

Q ss_pred             CccccCCEEecCCCeEeCCCCCceEEEecCCceEEEeeecC-C-CCCCCCCCCCCCCCCCCCC
Q psy11988         34 QGCVHHGVFRESGSEWTDPDNPCRIFTCKAGVVTETEMQCY-A-PCKHPTPPGPGQCCPTCPG   94 (156)
Q Consensus        34 ~~C~~~g~~y~~Ge~w~~~~d~C~~C~C~~G~v~C~~~~Cp-~-~C~~~~~~~pG~CCp~C~~   94 (156)
                      .+|.|+|++|.+|++|++  |+|++|+|.+|.+.|.++.|| + .|.++. ..+|+|||+|+.
T Consensus         8 ~~C~~~g~~y~~Ge~w~~--d~C~~C~C~~G~v~C~~~~Cp~~~~c~~~~-~~~g~CCp~C~~   67 (73)
T d1u5ma_           8 GSCVQDGQRYNDKDVWKP--EPCRICVCDTGTVLCDDIICEDVKDCLSPE-IPFGECCPICPA   67 (73)
T ss_dssp             SCEESSSCEECSSCEECS--CSSEEEEEETTEEEEEECCCSCCSSCSCCC-CCSSCSCCSCCS
T ss_pred             CCCeECCEEecCCCEECC--CCCeEeEecCCeEEEeeccCCCCCCCCCce-ecCCCcCCcCCC
Confidence            579999999999999998  889999999999999999999 4 577776 789999999975

>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.8e-06  Score=54.31  Aligned_cols=33  Identities=24%  Similarity=0.584  Sum_probs=29.0

Q ss_pred             CCeEEeeccCCCCCCCCCcccccccCCCcCCCCCc
Q psy11988          1 NGFVECNRKSCPNQEGCHKLLEAKEKDGCCRKCQG   35 (156)
Q Consensus         1 ~G~v~C~~~~Cp~~~~C~~~v~~~~~g~CCP~C~~   35 (156)
                      +|.|+|.++.||++..|.+++  +.+|+|||+|+.
T Consensus        35 ~G~v~C~~~~Cp~~~~c~~~~--~~~g~CCp~C~~   67 (73)
T d1u5ma_          35 TGTVLCDDIICEDVKDCLSPE--IPFGECCPICPA   67 (73)
T ss_dssp             TTEEEEEECCCSCCSSCSCCC--CCSSCSCCSCCS
T ss_pred             CCeEEEeeccCCCCCCCCCce--ecCCCcCCcCCC
Confidence            699999999999875588888  889999999964

>d1o9aa1 g.27.1.1 (A:17-60) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.078  Score=30.16  Aligned_cols=38  Identities=18%  Similarity=0.421  Sum_probs=28.1

Q ss_pred             CccccCCEEecCCCeEeCC-CCCceEEEecCCc--eEEEee
Q psy11988         34 QGCVHHGVFRESGSEWTDP-DNPCRIFTCKAGV--VTETEM   71 (156)
Q Consensus        34 ~~C~~~g~~y~~Ge~w~~~-~d~C~~C~C~~G~--v~C~~~   71 (156)
                      ++|..+|++|..|++|+.. ..+=.+|+|..+.  +.|..+
T Consensus         3 ~gC~dnGk~Y~v~~QWer~YlGs~l~CTC~Gg~~G~~C~sK   43 (44)
T d1o9aa1           3 PGCYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCESK   43 (44)
T ss_dssp             SSCBCSSCBCCTTCEEEEEETTEEEEEEECSSTTCEEEEEC
T ss_pred             CccccCCeEEecchhhhhhhcCCeEEEEEccCccceecCcC
Confidence            4799999999999999763 1233478888665  777753

>d2cg7a1 g.27.1.1 (A:109-151) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.13  Score=29.27  Aligned_cols=36  Identities=22%  Similarity=0.381  Sum_probs=27.4

Q ss_pred             cccCCEEecCCCeEeCCCC---CceEEEec---CCceEEEee
Q psy11988         36 CVHHGVFRESGSEWTDPDN---PCRIFTCK---AGVVTETEM   71 (156)
Q Consensus        36 C~~~g~~y~~Ge~w~~~~d---~C~~C~C~---~G~v~C~~~   71 (156)
                      |..+|+.|..|++|....|   .=..|+|.   +|...|.++
T Consensus         2 C~d~g~~Y~VGe~Wer~~d~~g~m~~CtC~G~GrG~~~Cd~~   43 (43)
T d2cg7a1           2 CHEGGQSYKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPI   43 (43)
T ss_dssp             EEETTEEEETTCEEEEECTTSSSEEEEEEEETTTTEEEEEEC
T ss_pred             ceeCCcEEEcCCEEeeccccCCcEEEEEEecCCcccEEeccC
Confidence            5668999999999976543   34579997   567888764

>d1e88a3 g.27.1.1 (A:1-41) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: Fibronectin type I module
domain: Fibronectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.28  E-value=0.27  Score=27.25  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=26.7

Q ss_pred             cCCEEecCCCeEeCC-CCCceEEEecCCceEEEe
Q psy11988         38 HHGVFRESGSEWTDP-DNPCRIFTCKAGVVTETE   70 (156)
Q Consensus        38 ~~g~~y~~Ge~w~~~-~d~C~~C~C~~G~v~C~~   70 (156)
                      .+|..|..|.+|... ...-..|+|..+.|.|..
T Consensus         7 d~Gv~Y~~GmrW~~tQGskqMlCTClgnGisC~E   40 (41)
T d1e88a3           7 DSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQE   40 (41)
T ss_dssp             TTTEEECSSEEEEEESSSSEEEEEECSSSCCCEE
T ss_pred             cCCeEEecchhhhhhcCcceeEEeeeCCceeccc
Confidence            579999999999653 345678999999998874