Psyllid ID: psy12005

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MDYGLLEEDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTPRSETTATLTLERNETNNDVTGFLTKIHGNNGVSILGGLELELLSDMDPESLTDIIPDKLFLDQFKEVSSRYFSNKNHHSKETKSEKILHHRYVILFAVYVL
Secondary Structure (PSIPRED)
ccccccccccccccEEEEcccccEEEEEEEccHHHHHHHHHHHccccccEEEEEcccccEEcccccccccccccEEEEEEcccEEcccccccccEEccccccccHHHHHHHHHHccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEccccccEEEEEHccHHHHHHHHHHHHcccccEEEEEEccccEEccHHHHHHcccccEEEEEEcccEEccccccccEEEcccccccHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEc
Coil and Loop (DISEMBL)
mdyglleedgiglpckvvdsnrekkIGIVALSLKDLMNRARLKLGMSSVVKVVLdldgtevdeeEYFSTLEKNTSLMIlskndkwtprsetTATLTLernetnndvTGFLTKihgnngvsilGGLElellsdmdpesltdiipdklFLDQFKEVSsryfsnknhhsketksekilHHRYVILFAVYVL
Flexible Loop (DISEMBL)
mdyglleedgiglpckvvdsnrekKIGIVALSLKDLMNRarlklgmssVVKVVLDLDGTEVDEEEYfstlekntslmilskndkwtprSETTatltlernetnNDVTGFLTKIHGNNGVSILGGLELELLSDMDPESLTDIIPDKLFLDQFKEVSSryfsnknhhsketksekilhhryVILFAVYVL
Low Complexity Region (SEG)
MDYGLLEEDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTPRSETTATLTLERNETNNDVTGFLTKIHGNNGVSIlgglelellSDMDPESLTDIIPDKLFLDQFKEVSSRYFSNKNHHSKETKSEKILHHRYVILFAVYVL
Disordered region (IsUnstruct)
*****LEEDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSK********************TNNDVTGFLTKIHGNNGVSILGGLELELLSDMDPESLTDIIPDKLFLDQFKEVSSRY**************KILHHRYVILFAVYV*
Disordered Region (DISOPRED)
**************CKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTPRSETT****************FLTKIHGNNGVSILGGLELELLSDMDPESLTDIIPDKLFLDQFKEVSS**************SEKILHHRYVILFAVYVL
Disordered Region (DISEMBL)
MDYGLLEEDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTPRSETTATLTLERNETNNDVTGFLTKIHGNNGVSILGGLELELLSDMDPESLTDIIPDKLFLDQFKEVSSRY************SEKILHHRYVILFAVYVL
Disordered Region (DISPRO)
*****L****IGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTPRSETTATLTLERNETNNDVTGFLTKIHGNNGVSILGGLELELLSDMDPESLTDIIPDKLFLDQFKEVSSRYFSNKNHHSKETKSEKILHHRYVILFAVYVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYGLLEEDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTPRSETTATLTLERNETNNDVTGFLTKIHGNNGVSILGGLELELLSDMDPESLTDIIPDKLFLDQFKEVSSRYFSNKNHHSKETKSEKILHHRYVILFAVYVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
P56198	239	Cell death activator CIDE	yes	N/A	0.606	0.476	0.371	2e-11
O70303	219	Cell death activator CIDE	no	N/A	0.611	0.525	0.301	2e-10
Q9UHD4	219	Cell death activator CIDE	yes	N/A	0.611	0.525	0.299	3e-10
Q96AQ7	238	Cell death activator CIDE	no	N/A	0.409	0.323	0.423	5e-10
F1MN90	222	Cell death activator CIDE	yes	N/A	0.611	0.518	0.338	6e-10
O60543	219	Cell death activator CIDE	no	N/A	0.579	0.497	0.336	7e-10
Q5XI33	238	Cell death activator CIDE	no	N/A	0.606	0.478	0.347	1e-09
O70302	217	Cell death activator CIDE	no	N/A	0.409	0.354	0.423	2e-09
Q3T191	219	Cell death activator CIDE	no	N/A	0.611	0.525	0.282	2e-09
O00273	331	DNA fragmentation factor	no	N/A	0.388	0.220	0.342	0.0003

>sp|P56198|CIDEC_MOUSE Cell death activator CIDE-3 OS=Mus musculus GN=Cidec PE=1 SV=2

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 7/121 (5%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRAR--LKLGMSSVVKVVLDLDGTEVDEEEYFSTLE 71
           PC+V  ++R+ + GI+A SL+DL+N+ +  LKL       +VL+ DGT V+ EEYF  L 
Sbjct: 44  PCRVSTADRKVRKGIMAHSLEDLLNKVQDILKLK-DKPFSLVLEEDGTIVETEEYFQALA 102

Query: 72  KNTSLMILSKNDKWTPRSET---TATLTLERNETNN-DVTGFLTKIHGNNGVSILGGLEL 127
           K+T  M+L K  KW P SE     A L L +  T   DV      ++  N    +G L +
Sbjct: 103 KDTMFMVLLKGQKWKPPSEQRKKRAQLALSQKPTKKIDVARVTFDLYKLNPQDFIGCLNV 162

Query: 128 E 128
           +
Sbjct: 163 K 163

Induces apoptosis.
Mus musculus (taxid: 10090)

>sp|O70303|CIDEB_MOUSE Cell death activator CIDE-B OS=Mus musculus GN=Cideb PE=1 SV=2

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 1/116 (0%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKN 73
           P +V D  R  + G+ A SL++L+++    L +  V+ +VL+ DGT VD E++F  LE +
Sbjct: 37  PFRVCDHKRTVRKGLTAASLQELLDKVLETLLLRGVLTLVLEEDGTAVDSEDFFQLLEDD 96

Query: 74  TSLMILSKNDKWTPRSET-TATLTLERNETNNDVTGFLTKIHGNNGVSILGGLELE 128
           T LM+L +   W+P+S   +  L  E+ + + D+      ++  N   + G L ++
Sbjct: 97  TCLMVLEQGQSWSPKSGMLSYGLGREKPKHSKDIARITFDVYKQNPRDLFGSLNVK 152

Activates apoptosis.

Mus musculus (taxid: 10090)

>sp|Q9UHD4|CIDEB_HUMAN Cell death activator CIDE-B OS=Homo sapiens GN=CIDEB PE=1 SV=2

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 2/117 (1%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKN 73
           P +V D  R  + G+ A + ++L+ +A   L ++ V+ +VL+ DGT VD E++F  LE +
Sbjct: 37  PFRVCDHKRTIRKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDD 96

Query: 74  TSLMILSKNDKWTPRSETTATLTL--ERNETNNDVTGFLTKIHGNNGVSILGGLELE 128
           T LM+L     W+P      +  L  ER + + D+  F   ++  N   + G L ++
Sbjct: 97  TCLMVLQSGQSWSPTRSGVLSYGLGRERPKHSKDIARFTFDVYKQNPRDLFGSLNVK 153

Activates apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q96AQ7|CIDEC_HUMAN Cell death activator CIDE-3 OS=Homo sapiens GN=CIDEC PE=1 SV=1

 Score = 64.3 bits (155), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMS-SVVKVVLDLDGTEVDEEEYFSTLEK 72
           PC+V  ++R  + GI+A SL+DL+ + R  L ++     +VL+ DGT V+ EEYF  L  
Sbjct: 44  PCRVSTADRSVRKGIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAG 103

Query: 73  NTSLMILSKNDKWTPRSE 90
           +T  M+L K  KW P SE
Sbjct: 104 DTVFMVLQKGQKWQPPSE 121

Induces apoptosis.

Homo sapiens (taxid: 9606)

>sp|F1MN90|CIDEC_BOVIN Cell death activator CIDE-3 OS=Bos taurus GN=CIDEC PE=2 SV=1

 Score = 63.9 bits (154), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMS-SVVKVVLDLDGTEVDEEEYFSTLEK 72
           PC+V  ++R  + GI+  SL+DL  + R  L ++     +VL+ DGT V+ EEYF +L  
Sbjct: 29  PCRVTTADRSVRKGIMVHSLEDLHVKVRDTLMLAYKPFFLVLEEDGTTVETEEYFQSLAD 88

Query: 73  NTSLMILSKNDKWTPRSE--TTATLTLERNETNNDVTGFLTKIHGNNGVSILGGLELE 128
           +T  M+L K  KW P SE  T   L L       DV      ++  N    +G L ++
Sbjct: 89  DTVFMVLHKGQKWQPPSEQSTRYQLALSHKPAKIDVARVTFDLYKVNPQDFIGCLNVK 146

Binds to lipid droplets and regulates their enlargement, thereby restricting lipolysis and favoring storage. At focal contact sites between lipid droplets, promotes directional net neutral lipid transfer from the smaller to larger lipid droplets. The transfer direction may be driven by the internal pressure difference between the contacting lipid droplet pair. May act as a CEBPB coactivator in the white adipose tissue to control the expression of a subset of CEBPB downstream target genes, including SOCS1, SOCS3, TGFB1, TGFBR1, ID2 and XDH. When overexpressed in preadipocytes, induces apoptosis or increases cell susceptibility to apoptosis induced by serum deprivation or TGFB treatment. The physiological significance of its role in apoptosis is unclear.

Bos taurus (taxid: 9913)

>sp|O60543|CIDEA_HUMAN Cell death activator CIDE-A OS=Homo sapiens GN=CIDEA PE=1 SV=1

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 1/110 (0%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEK 72
           P +V + +R  + G++A SL++L+++    L +++ +V +VL+ DGT VD EE+F TL  
Sbjct: 36  PFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGD 95

Query: 73  NTSLMILSKNDKWTPRSETTATLTLERNETNNDVTGFLTKIHGNNGVSIL 122
           NT  MIL K  KW P S+   T +  +      VT  L +++  + +  L
Sbjct: 96  NTHFMILEKGQKWMPGSQHVPTCSPPKRSGIARVTFDLYRLNPKDFIGCL 145

Activates apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q5XI33|CIDEC_RAT Cell death activator CIDE-3 OS=Rattus norvegicus GN=Cidec PE=2 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 7/121 (5%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRAR--LKLGMSSVVKVVLDLDGTEVDEEEYFSTLE 71
           PC+V  ++R+ + GI+A SL+DL+ + +  LKL       +VL+ DGT V+ EEYF  L 
Sbjct: 44  PCRVSTADRKVRKGIMAHSLEDLLGKVQDILKLK-DKPFSLVLEEDGTIVETEEYFQALP 102

Query: 72  KNTSLMILSKNDKWTPRSET---TATLTLERNETNN-DVTGFLTKIHGNNGVSILGGLEL 127
           ++T  M+L K  KW   SE     A L+L +  T   DV      ++  N    +G L +
Sbjct: 103 RDTVFMVLQKGQKWKSPSEQRKKKAQLSLSQKPTKKIDVARVTFDLYKLNPQDFIGCLNV 162

Query: 128 E 128
           +
Sbjct: 163 K 163

Binds to lipid droplets and regulates their enlargement, thereby restricting lipolysis and favoring storage. At focal contact sites between lipid droplets, promotes directional net neutral lipid transfer from the smaller to larger lipid droplets. The transfer direction may be driven by the internal pressure difference between the contacting lipid droplet pair. May act as a CEBPB coactivator in the white adipose tissue to control the expression of a subset of CEBPB downstream target genes, including SOCS1, SOCS3, TGFB1, TGFBR1, ID2 and XDH. When overexpressed in preadipocytes, induces apoptosis or increases cell susceptibility to apoptosis induced by serum deprivation or TGFB treatment. The physiological significance of its role in apoptosis is unclear.

Rattus norvegicus (taxid: 10116)

>sp|O70302|CIDEA_MOUSE Cell death activator CIDE-A OS=Mus musculus GN=Cidea PE=1 SV=2

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEK 72
           P +V + +R  + G++A SL++L+++    L +++ +V +VL+ DGT VD EE+F TL  
Sbjct: 36  PFRVSNHDRSSRRGVMASSLQELISKTLDVLVITTGLVTLVLEEDGTVVDTEEFFQTLRD 95

Query: 73  NTSLMILSKNDKWTPRSE 90
           NT  MIL K  KWTP S+
Sbjct: 96  NTHFMILEKGQKWTPGSK 113

Activates apoptosis.

Mus musculus (taxid: 10090)

>sp|Q3T191|CIDEB_BOVIN Cell death activator CIDE-B OS=Bos taurus GN=CIDEB PE=2 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKN 73
           P +V D+ R  + G+ A + ++L+++A   L +S  + +VL+ DGT V+ EE+F  LE +
Sbjct: 37  PFRVCDNKRTTRKGLTAATRQELLDKALEALVLSGALTLVLEEDGTTVESEEFFQLLEDD 96

Query: 74  TSLMILSKNDKWTPRSETTATLTL--ERNETNNDVTGFLTKIHGNNGVSILGGLELE 128
           T LM+L     W+PR     +  L  E+ + + D+      ++  +   + G L ++
Sbjct: 97  TCLMVLELGQSWSPRRSGVLSYGLGQEKPKHSKDIARITFDVYKQSPRDLFGSLNIK 153

Activates apoptosis.

Bos taurus (taxid: 9913)

>sp|O00273|DFFA_HUMAN DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMS---SVVKVVLDLDGTEVDEEEYFSTL 70
          PC +  +   ++ G+ A  L+DL ++A   L +    + V +VL  DGT VD+++YF  L
Sbjct: 20 PCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCL 79

Query: 71 EKNTSLMILSKNDKWT 86
            NT  + L+ N+KW 
Sbjct: 80 PSNTKFVALASNEKWA 95

Inhibitor of the caspase-activated DNase (DFF40).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
307187665	202	Cell death activator CIDE-B [Camponotus	0.824	0.767	0.445	7e-31
383851939	202	PREDICTED: DNA fragmentation factor subu	0.824	0.767	0.433	7e-31
322780815	203	hypothetical protein SINV_05579 [Solenop	0.813	0.753	0.437	2e-30
332026219	203	Cell death activator CIDE-B [Acromyrmex	0.824	0.763	0.436	7e-30
307193754	200	Cell death activator CIDE-B [Harpegnatho	0.819	0.77	0.427	7e-29
193627422	188	PREDICTED: DNA fragmentation factor subu	0.909	0.909	0.417	1e-28
284155212	192	apoptosis-related protein lCAD [Bombyx m	0.893	0.875	0.447	1e-27
357628606	197	cell death activator CIDE-B [Danaus plex	0.904	0.862	0.424	4e-27
168823417	197	cell death activator CIDE-B [Bombyx mori	0.797	0.761	0.478	5e-27
110772194	204	PREDICTED: DNA fragmentation factor subu	0.824	0.759	0.417	2e-26

>gi|307187665|gb|EFN72637.1| Cell death activator CIDE-B [Camponotus floridanus]

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 111/173 (64%), Gaps = 18/173 (10%)

Query: 10  GIGLPCKVVDSNREKKIGIVALSLKDLMN--RARLKLGMSSVVKVVLDLDGTEVDEEEYF 67
           G+G P K+VD  RE++ GI A SLK+L N  R RL L + + + +VL+ DGTEVD+EEYF
Sbjct: 10  GMGNPYKIVDHTRERRKGITASSLKELTNIARNRLALPVDADLTIVLEQDGTEVDDEEYF 69

Query: 68  STLEKNTSLMILSKNDKWTP-RSETTATLTLERNETNND--------------VTGFLTK 112
           +TLEKNTSLM+L  + KW    S  TA+  +  ++ + +              +   ++ 
Sbjct: 70  ATLEKNTSLMVLHGDQKWIAVGSSKTASRYIVVDDVDAEGSSRTDKIRRRRTPIEPLVSS 129

Query: 113 IHGNNG-VSILGGLELELLSDMDPESLTDIIPDKLFLDQFKEVSSRYFSNKNH 164
           +HG+   +S+LGG +LELLSDMDP+SL DI+PD+LFL+Q KE S R+ + K  
Sbjct: 130 LHGDPSHISLLGGNDLELLSDMDPDSLADIVPDRLFLEQLKEASGRFLAEKRQ 182

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851939|ref|XP_003701488.1| PREDICTED: DNA fragmentation factor subunit alpha-like [Megachile rotundata]

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/173 (43%), Positives = 108/173 (62%), Gaps = 18/173 (10%)

Query: 10  GIGLPCKVVDSNREKKIGIVALSLKDL--MNRARLKLGMSSVVKVVLDLDGTEVDEEEYF 67
           G+G P K+VD  REK+ GI A SLK+L  + R RL L + + + +VL+ DGTEVD+EEYF
Sbjct: 10  GLGNPYKIVDHAREKRKGITASSLKELTSIARNRLSLPLDAELTIVLEQDGTEVDDEEYF 69

Query: 68  STLEKNTSLMILSKNDKWTPRSETTATLTL------------ERNETNN---DVTGFLTK 112
           +TLE+NTSLM+L  + KW     + A                +R+E       +   ++ 
Sbjct: 70  ATLERNTSLMVLYGDQKWVAAGSSKAASRYIVVDDVDNVEGGQRDEIRRRRPPIEPLVSS 129

Query: 113 IHGNNG-VSILGGLELELLSDMDPESLTDIIPDKLFLDQFKEVSSRYFSNKNH 164
           +HG+   +S+LGG +LELLSDMDP+SL DI+PD++FL+Q KE S R+ + K  
Sbjct: 130 LHGDPSHISLLGGNDLELLSDMDPDSLADIVPDRIFLEQLKEASGRFLAEKRQ 182

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322780815|gb|EFZ10044.1| hypothetical protein SINV_05579 [Solenopsis invicta]

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/176 (43%), Positives = 110/176 (62%), Gaps = 23/176 (13%)

Query: 10  GIGLPCKVVDSNREKKIGIVALSLKDLMN--RARLKLGMSSVVKVVLDLDGTEVDEEEYF 67
           G+G P K+VD  RE++ GI A SLK+L+N  R RL L + + + +VL+ DGTEVD+EEYF
Sbjct: 10  GLGNPYKIVDHTRERRKGITASSLKELINIARNRLSLPVDADLTIVLEQDGTEVDDEEYF 69

Query: 68  STLEKNTSLMILSKNDKWTPR--SETTATL----------------TLERNETNNDVTGF 109
           +TLE+NTSLM+L  + KW     S+T +                   + R  T   +   
Sbjct: 70  ATLERNTSLMVLHGDQKWIAAGGSKTASRYIVVDDMDNVDDASRVDKIRRRRTP--IEPL 127

Query: 110 LTKIHGNNG-VSILGGLELELLSDMDPESLTDIIPDKLFLDQFKEVSSRYFSNKNH 164
           ++ +HG+   +S+LGG +LELLSDMDP+SL DI+PD+LFL+Q KE S R+ + K  
Sbjct: 128 VSSLHGDPSHISLLGGNDLELLSDMDPDSLADIVPDRLFLEQLKEASGRFLAEKRQ 183

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026219|gb|EGI66361.1| Cell death activator CIDE-B [Acromyrmex echinatior]

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 107/174 (61%), Gaps = 19/174 (10%)

Query: 10  GIGLPCKVVDSNREKKIGIVALSLKDLMN--RARLKLGMSSVVKVVLDLDGTEVDEEEYF 67
           G+G P K+VD  RE++ GI A SLK+L N  R RL   + + + +VL+ DGTEVD+EEYF
Sbjct: 10  GVGNPYKIVDHTRERRKGITASSLKELTNVARNRLAFPVDADLTIVLEQDGTEVDDEEYF 69

Query: 68  STLEKNTSLMILSKNDKWTP-RSETTATLTLERNETNNDVTG---------------FLT 111
           +TLE+NTSLM+L  + KW    S  TA+  +  +  +N   G                ++
Sbjct: 70  ATLERNTSLMVLHGDQKWAAVGSSKTASRCIVVDNVDNAEGGSKVDKIRRRRTLIEPLVS 129

Query: 112 KIHGN-NGVSILGGLELELLSDMDPESLTDIIPDKLFLDQFKEVSSRYFSNKNH 164
            +H + + +S+LGG ELE LSDMDP+SL DI+PD+LFL+Q KE S R+   K  
Sbjct: 130 SLHSDPSHISLLGGTELETLSDMDPDSLGDIVPDRLFLEQLKEASGRFLVEKRQ 183

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193754|gb|EFN76436.1| Cell death activator CIDE-B [Harpegnathos saltator]

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 108/173 (62%), Gaps = 19/173 (10%)

Query: 10  GIGLPCKVVDSNREKKIGIVALSLKDLMN--RARLKLGMSSVVKVVLDLDGTEVDEEEYF 67
           G G P K+VD  RE++ GI A SLK+L N  R+RL   + + + +VL+ DGTEVD+EEYF
Sbjct: 10  GTGNPYKIVDHTRERRKGITASSLKELTNVARSRLAFPVDADLTIVLEQDGTEVDDEEYF 69

Query: 68  STLEKNTSLMILSKNDKWTPRSETTATLTLERNETNNDVTG---------------FLTK 112
           +TLE+NTSLM+L  + KW       A+  +  ++ +N V G                ++ 
Sbjct: 70  ATLERNTSLMVLHGDQKWVAVGSKRASRYIVVDDVDN-VEGSSRTDKIRQRTLIEPLVSS 128

Query: 113 IHGN-NGVSILGGLELELLSDMDPESLTDIIPDKLFLDQFKEVSSRYFSNKNH 164
           +HG+ + +S+LG  +LELLSDMDP+SL DI+ DKLFL+Q KE S R+  ++  
Sbjct: 129 LHGDPSHISLLGPHDLELLSDMDPDSLADIVSDKLFLEQLKEASGRFLVDRRQ 181

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193627422|ref|XP_001947580.1| PREDICTED: DNA fragmentation factor subunit alpha-like [Acyrthosiphon pisum]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 105/175 (60%), Gaps = 4/175 (2%)

Query: 5   LLEEDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS--VVKVVLDLDGTEVD 62
           +  E+  G P K++DS RE KIGIVA SL D M +A+ KL ++    +KVVL+ DGTE+D
Sbjct: 1   MASEEYSGKPYKIIDSKREHKIGIVATSLSDFMTKAQQKLDINENEPIKVVLESDGTEID 60

Query: 63  EEEYFSTLEKNTSLMILSKNDKWTPRSETTATLTLERNETNNDVTGFLTKIHGNNG-VSI 121
           EE+YF TLE NT +MIL  + KW+P  + +     ++ +    +   + ++  + G ++ 
Sbjct: 61  EEDYFDTLETNTLIMILKSDQKWSPY-DISFKFADDQIDGTQSLNSLIRRLQNDIGQIAF 119

Query: 122 LGGLELELLSDMDPESLTDIIPDKLFLDQFKEVSSRYFSNKNHHSKETKSEKILH 176
           L G +LELLSDMDPESL D+  D+ FLDQ KE S R+   K          K+ H
Sbjct: 120 LSGCDLELLSDMDPESLVDLAFDRSFLDQVKEASGRFLYEKREAQDAINLLKLYH 174

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|284155212|gb|ADB78701.1| apoptosis-related protein lCAD [Bombyx mori]

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 106/181 (58%), Gaps = 13/181 (7%)

Query: 8   EDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSV-VKVVLDLDGTEVDEEEY 66
           E+ I  P K+ D NREKK GIVA+SL+DL+ +   KLGM S  + VVL+ DGTEVD+EEY
Sbjct: 2   ENDINKPYKICDVNREKKKGIVAMSLEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEEY 61

Query: 67  FSTLEKNTSLMILSKNDKWTPRS-------ETTATLTLERNETNNDVTGFLTKIHGNNGV 119
           FSTL+ +TSLMIL  N+KW P         + T  + L   E    + G L   H    +
Sbjct: 62  FSTLDPDTSLMILHGNEKWVPNMPKCQVSLDQTDDIALADKEQVASLVGRLQ--HNLCHI 119

Query: 120 SILGGLELELLSDMDPESLTDIIPD---KLFLDQFKEVSSRYFSNKNHHSKETKSEKILH 176
           S+LGG +LELLSDMDP+SL DI+ D   ++ L+  KE S R    K    +     K+ H
Sbjct: 120 SLLGGQDLELLSDMDPDSLADIVTDRDNRIILEHIKEASGRILLEKRQAQELWNCLKLYH 179

Query: 177 H 177
            
Sbjct: 180 Q 180

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628606|gb|EHJ77878.1| cell death activator CIDE-B [Danaus plexippus]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 9/179 (5%)

Query: 8   EDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSV-VKVVLDLDGTEVDEEEY 66
           ED I  P K+ D NREKK GIVA SL+DL+ +   KLG+    + VVL+ DGTEVD+EEY
Sbjct: 2   EDNINKPYKICDMNREKKKGIVASSLEDLIGKVPEKLGLPPENLTVVLECDGTEVDDEEY 61

Query: 67  FSTLEKNTSLMILSKNDKWTPRSETTATLTLERNETN----NDVTGFLTKIHGN-NGVSI 121
           FSTL+ +T+LMIL  N+KW+P          + +E +      V   + ++  N   +S+
Sbjct: 62  FSTLDPDTALMILHGNEKWSPNMPKCQVSLDQTDEVSLGEKGQVASLVGRLQHNLCHISL 121

Query: 122 LGGLELELLSDMDPESLTDIIPD---KLFLDQFKEVSSRYFSNKNHHSKETKSEKILHH 177
           LGG +LELLSDMDP+SL DI+ D   ++ L+  KE S R    K       +  K+ H 
Sbjct: 122 LGGQDLELLSDMDPDSLADIVTDRDNRIILEHIKEASGRILLEKRQAQDAMELLKLYHQ 180

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|168823417|ref|NP_001108342.1| cell death activator CIDE-B [Bombyx mori] gi|163962995|gb|ABY50540.1| cell death activator CIDE-B [Bombyx mori]

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 101/163 (61%), Gaps = 13/163 (7%)

Query: 8   EDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSV-VKVVLDLDGTEVDEEEY 66
           E+ I  P K+ D NREKK GIVA+SL+DL+ +   KLGM S  + VVL+ DGTEVD+EEY
Sbjct: 2   ENDINKPYKICDVNREKKKGIVAMSLEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEEY 61

Query: 67  FSTLEKNTSLMILSKNDKWTPRS-------ETTATLTLERNETNNDVTGFLTKIHGNNGV 119
           FSTL+ +TSLMIL  N+KW P         + T  + L   E    + G L   H    +
Sbjct: 62  FSTLDPDTSLMILHGNEKWVPNMPKCQVSLDQTDDIALGDKEQVASLVGRLQ--HNLCHI 119

Query: 120 SILGGLELELLSDMDPESLTDIIPD---KLFLDQFKEVSSRYF 159
           S+LGG +LELLSDMDP+SL DI+ D   ++ L+  KE S R  
Sbjct: 120 SLLGGQDLELLSDMDPDSLADIVTDRDNRIILEHIKEASGRIL 162

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110772194|ref|XP_001120965.1| PREDICTED: DNA fragmentation factor subunit alpha [Apis mellifera]

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 107/175 (61%), Gaps = 20/175 (11%)

Query: 10  GIGLPCKVVDSNREKKIGIVALSLKDLMN--RARLKLGMSSVVKVVLDLDGTEVDEEEYF 67
           G+G P K+VD  REK+ GI A SLK+L++  R RL L + + V +VL+ DGTEVD+EEYF
Sbjct: 10  GLGNPYKIVDHTREKRKGITASSLKELISIARNRLSLPLDAEVTIVLEQDGTEVDDEEYF 69

Query: 68  STLEKNTSLMILSKNDKWTPR-SETTATLTLERNETNN---------------DVTGFLT 111
           +TLE+NTSLM+L  N KW    S   A+  +  ++ +N                +   ++
Sbjct: 70  ATLERNTSLMVLYGNQKWVAAGSNKAASRYIVVDDVDNIECGQRRDEVRRRRPPIEALVS 129

Query: 112 KIHGN-NGVSILGGLELELLSDMDPESLTDIIPDK-LFLDQFKEVSSRYFSNKNH 164
            +HG+ + +S+L G  LELLSDMDP+S+ DI+    +FL+Q KE S R+ + K  
Sbjct: 130 SLHGDPSHISLLDGHNLELLSDMDPDSVADIVSGNIIFLEQLKEASGRFLAEKRQ 184

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
MGI|MGI:95585	239	Cidec "cell death-inducing DFF	0.489	0.384	0.424	3.1e-12
UNIPROTKB|E2RGS0	238	CIDEC "Uncharacterized protein	0.409	0.323	0.435	1e-11
FB|FBgn0028407	266	Drep-3 "DNA fragmentation fact	0.648	0.458	0.328	1.2e-11
RGD|1305106	215	Cidea "cell death-inducing DFF	0.441	0.386	0.404	1.3e-11
UNIPROTKB|I3LED4	219	LOC100737011 "Uncharacterized	0.393	0.337	0.44	3.5e-11
MGI|MGI:1270845	217	Cidea "cell death-inducing DNA	0.409	0.354	0.423	3.5e-11
ZFIN|ZDB-GENE-030131-4591	239	si:dkey-91f15.6 "si:dkey-91f15	0.409	0.322	0.389	3.5e-11
UNIPROTKB|G3N0M6	110	LOC100336584 "Uncharacterized	0.393	0.672	0.426	4.5e-11
MGI|MGI:1270844	219	Cideb "cell death-inducing DNA	0.553	0.474	0.314	4.5e-11
UNIPROTKB|E2RQL5	219	CIDEA "Uncharacterized protein	0.420	0.360	0.412	5.8e-11

MGI|MGI:95585 Cidec "cell death-inducing DFFA-like effector c" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 42/99 (42%), Positives = 58/99 (58%)

Query:    14 PCKVVDSNREKKIGIVALSLKDLMNRAR--LKLGMSSVVKVVLDLDGTEVDEEEYFSTLE 71
             PC+V  ++R+ + GI+A SL+DL+N+ +  LKL       +VL+ DGT V+ EEYF  L 
Sbjct:    44 PCRVSTADRKVRKGIMAHSLEDLLNKVQDILKL-KDKPFSLVLEEDGTIVETEEYFQALA 102

Query:    72 KNTSLMILSKNDKWTPRSETT---ATLTLERNETNN-DV 106
             K+T  M+L K  KW P SE     A L L +  T   DV
Sbjct:   103 KDTMFMVLLKGQKWKPPSEQRKKRAQLALSQKPTKKIDV 141

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005829 "cytosol" evidence=ISO;ISA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO;ISA

UNIPROTKB|E2RGS0 CIDEC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 34/78 (43%), Positives = 48/78 (61%)

Query:    14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSV-VKVVLDLDGTEVDEEEYFSTLEK 72
             PC+V  ++R  + GI+A SLKDL+N+ R  L ++     +VL+ DGT V+ EEYF  L  
Sbjct:    44 PCRVSTADRSVRKGIIAHSLKDLLNKVRDTLLLADKPFYLVLEEDGTTVETEEYFQALAD 103

Query:    73 NTSLMILSKNDKWTPRSE 90
             +T  M+L K  KW P  E
Sbjct:   104 DTVFMVLQKGQKWQPPQE 121

GO:0005925 "focal adhesion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

FB|FBgn0028407 Drep-3 "DNA fragmentation factor-related protein 3" [Drosophila melanogaster (taxid:7227)]

 Score = 160 (61.4 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 42/128 (32%), Positives = 62/128 (48%)

Query:    14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKN 73
             P K+ D  R  +  +VA +L +L  +  LK   +    + LD DGTEVD+EEYFSTLE N
Sbjct:   120 PFKIKDITRNIRKAVVATTLSELRTKVSLKFERAQPA-IHLDCDGTEVDDEEYFSTLEPN 178

Query:    74 TSLMILSKNDKWTPRSETTATLTLERNETNNDVTGFLTKIHGNNGVSIXXXXXXXXXSDM 133
               L+ +   ++W   S+  A L     +    +   ++K+  N              S+M
Sbjct:   179 AELIAVFPGEQWRDPSDYNANLRRTSLDAQR-LRSLVSKLQPN----YMNDDDLDKLSNM 233

Query:   134 DPESLTDI 141
             DP SL DI
Sbjct:   234 DPNSLVDI 241

GO:0005622 "intracellular" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

RGD|1305106 Cidea "cell death-inducing DFFA-like effector a" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 34/84 (40%), Positives = 54/84 (64%)

Query:    14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEK 72
             P +V + +R  + G++A SL++L+++    L +++ +V +VL+ DGT VD EE+F TL  
Sbjct:    36 PFRVSNHDRSSRRGVMASSLRELISKTLDVLVITTGLVTLVLEEDGTVVDTEEFFQTLRD 95

Query:    73 NTSLMILSKNDKWTPRSETTATLT 96
             NT  MIL K  KWTP ++   T T
Sbjct:    96 NTHFMILEKGQKWTPGNKYVCTQT 119

GO:0001659 "temperature homeostasis" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005740 "mitochondrial envelope" evidence=IEA;ISO

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0006309 "apoptotic DNA fragmentation" evidence=IEA;ISO

GO:0006629 "lipid metabolic process" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008219 "cell death" evidence=ISO

GO:0010890 "positive regulation of sequestering of triglyceride" evidence=IEA;ISO

GO:0019915 "lipid storage" evidence=IEA;ISO

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA;ISO

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA;ISO

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IEA;ISO

GO:0050710 "negative regulation of cytokine secretion" evidence=IEA;ISO

GO:0050995 "negative regulation of lipid catabolic process" evidence=IEA;ISO

UNIPROTKB|I3LED4 LOC100737011 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 33/75 (44%), Positives = 48/75 (64%)

Query:    14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEK 72
             P +V + NR  + G+ A SL++L+++    L ++S VV +VL+ DGT VD EE+F  L  
Sbjct:    36 PFRVSNHNRSSRRGVTASSLQELLSKTLDALVIASRVVTLVLEEDGTVVDTEEFFQMLGD 95

Query:    73 NTSLMILSKNDKWTP 87
             NT  M+L K  KWTP
Sbjct:    96 NTHFMVLEKGQKWTP 110

GO:0006915 "apoptotic process" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

MGI|MGI:1270845 Cidea "cell death-inducing DNA fragmentation factor, alpha subunit-like effector A" [Mus musculus (taxid:10090)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 33/78 (42%), Positives = 52/78 (66%)

Query:    14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEK 72
             P +V + +R  + G++A SL++L+++    L +++ +V +VL+ DGT VD EE+F TL  
Sbjct:    36 PFRVSNHDRSSRRGVMASSLQELISKTLDVLVITTGLVTLVLEEDGTVVDTEEFFQTLRD 95

Query:    73 NTSLMILSKNDKWTPRSE 90
             NT  MIL K  KWTP S+
Sbjct:    96 NTHFMILEKGQKWTPGSK 113

GO:0001659 "temperature homeostasis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005740 "mitochondrial envelope" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0006309 "apoptotic DNA fragmentation" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0006915 "apoptotic process" evidence=IDA

GO:0008219 "cell death" evidence=IDA

GO:0010890 "positive regulation of sequestering of triglyceride" evidence=IDA

GO:0019915 "lipid storage" evidence=IMP

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IDA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0050710 "negative regulation of cytokine secretion" evidence=ISO

GO:0050995 "negative regulation of lipid catabolic process" evidence=ISO;IMP

ZFIN|ZDB-GENE-030131-4591 si:dkey-91f15.6 "si:dkey-91f15.6" [Danio rerio (taxid:7955)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 30/77 (38%), Positives = 50/77 (64%)

Query:    14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKN 73
             P +V++S+R  K GI+A  L+DL ++      +  +  +VLD DGT +D +++F TL+ N
Sbjct:    39 PFRVINSDRSIKKGIMADDLEDLHHKVMDVFHIHCISALVLDEDGTGIDTQDFFQTLKDN 98

Query:    74 TSLMILSKNDKWTPRSE 90
             T LM+L K  KW P+++
Sbjct:    99 TVLMVLGKGQKWAPQTK 115

GO:0005622 "intracellular" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|G3N0M6 LOC100336584 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 32/75 (42%), Positives = 51/75 (68%)

Query:    14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEK 72
             P +V + +R  + G++A SL++L+++    L ++S +V +VL+ DGT VD EE+F TL  
Sbjct:    36 PFRVSNHDRSSRRGVMASSLQELLSKTLDALVVASQLVTLVLEEDGTVVDTEEFFQTLGD 95

Query:    73 NTSLMILSKNDKWTP 87
             NT LM+L +  KWTP
Sbjct:    96 NTHLMVLEQGQKWTP 110

GO:0050995 "negative regulation of lipid catabolic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0019915 "lipid storage" evidence=IEA

GO:0010890 "positive regulation of sequestering of triglyceride" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006309 "apoptotic DNA fragmentation" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001659 "temperature homeostasis" evidence=IEA

MGI|MGI:1270844 Cideb "cell death-inducing DNA fragmentation factor, alpha subunit-like effector B" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 33/105 (31%), Positives = 59/105 (56%)

Query:    14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKN 73
             P +V D  R  + G+ A SL++L+++    L +  V+ +VL+ DGT VD E++F  LE +
Sbjct:    37 PFRVCDHKRTVRKGLTAASLQELLDKVLETLLLRGVLTLVLEEDGTAVDSEDFFQLLEDD 96

Query:    74 TSLMILSKNDKWTPRSETTAT-LTLERNETNNDVTGFLTKIHGNN 117
             T LM+L +   W+P+S   +  L  E+ + + D+      ++  N
Sbjct:    97 TCLMVLEQGQSWSPKSGMLSYGLGREKPKHSKDIARITFDVYKQN 141

GO:0005622 "intracellular" evidence=IEA

GO:0005829 "cytosol" evidence=ISA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISA

UNIPROTKB|E2RQL5 CIDEA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 33/80 (41%), Positives = 52/80 (65%)

Query:    14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEK 72
             P +V + +R  + G++A SLK+L+++    L ++S +V +VL+ DGT VD E++F TL  
Sbjct:    36 PFRVSNHDRSSRRGVMADSLKELLSKTLEALVITSGLVTLVLEEDGTVVDTEDFFQTLGD 95

Query:    73 NTSLMILSKNDKWTPRSETT 92
             NT  MIL +  KWTP +  T
Sbjct:    96 NTHFMILEEGQKWTPGANYT 115

GO:0050995 "negative regulation of lipid catabolic process" evidence=IEA

GO:0050710 "negative regulation of cytokine secretion" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0035634 "response to stilbenoid" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0019915 "lipid storage" evidence=IEA

GO:0010890 "positive regulation of sequestering of triglyceride" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006309 "apoptotic DNA fragmentation" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001659 "temperature homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	188
cd01615	78	cd01615, CIDE_N, CIDE_N domain, found at the N-ter	3e-30
cd06538	79	cd06538, CIDE_N_FSP27, CIDE_N domain of FSP27 prot	2e-19
smart00266	74	smart00266, CAD, Domains present in proteins impli	8e-19
pfam02017	78	pfam02017, CIDE-N, CIDE-N domain	2e-17
cd06537	81	cd06537, CIDE_N_B, CIDE_N domain of CIDE-B protein	1e-14
cd06539	78	cd06539, CIDE_N_A, CIDE_N domain of CIDE-A protein	1e-14
cd06536	80	cd06536, CIDE_N_ICAD, CIDE_N domain of ICAD	6e-14
cd06535	77	cd06535, CIDE_N_CAD, CIDE_N domain of CAD nuclease	1e-07

>gnl|CDD|119367 cd01615, CIDE_N, CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45)

 Score =  105 bits (264), Expect = 3e-30
 Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 1/75 (1%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEK 72
          P KV DS+R +K G+ A SL++L+++A  KL + S  V +VL+ DGTEVD+EEYF TL  
Sbjct: 4  PFKVCDSDRSRKKGVAASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTLPD 63

Query: 73 NTSLMILSKNDKWTP 87
          NT LM+L    KWTP
Sbjct: 64 NTVLMLLEPGQKWTP 78

These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein. Length = 78

>gnl|CDD|119371 cd06538, CIDE_N_FSP27, CIDE_N domain of FSP27 proteins

 Score = 78.3 bits (193), Expect = 2e-19
 Identities = 32/76 (42%), Positives = 47/76 (61%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKN 73
          P +V +++R  + GI+A SL+DL+N+    L +  +  +VLD DGT VD EE+F  L  N
Sbjct: 4  PFRVSNADRSLRKGIMADSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQALADN 63

Query: 74 TSLMILSKNDKWTPRS 89
          T  M+L K  KW P +
Sbjct: 64 TVFMVLGKGQKWKPPT 79

The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed. Length = 79

>gnl|CDD|128562 smart00266, CAD, Domains present in proteins implicated in post-mortem DNA fragmentation

 Score = 76.2 bits (188), Expect = 8e-19
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGM-SSVVKVVLDLDGTEVDEEEYFSTLEK 72
          P KV D +R  + G+ A SL++L+++   KL +  S V +VL+ DGT VD+EEYF TL  
Sbjct: 2  PFKVRDHDRNVRKGVAASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTLPD 61

Query: 73 NTSLMILSKNDKW 85
          NT LM L K +KW
Sbjct: 62 NTELMALEKGEKW 74

Length = 74

>gnl|CDD|202090 pfam02017, CIDE-N, CIDE-N domain

 Score = 72.8 bits (179), Expect = 2e-17
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRA--RLKLGMSSVVKVVLDLDGTEVDEEEYFSTLE 71
          P KV D +R  K G+ A SL++L+++    L+L    +V +VL+ DGTEVD E+YF TL 
Sbjct: 4  PFKVRDHDRRIKKGVAASSLQELLSKVCDILQLPDG-LVTLVLEEDGTEVDTEDYFQTLP 62

Query: 72 KNTSLMILSKNDKWTP 87
           NT L+ L+   KW P
Sbjct: 63 DNTELVALTSGQKWAP 78

This domain is found in CAD nuclease, and ICAD, the inhibitor of CAD nuclease. The two proteins interact through this domain. Length = 78

>gnl|CDD|119370 cd06537, CIDE_N_B, CIDE_N domain of CIDE-B proteins

 Score = 65.7 bits (160), Expect = 1e-14
 Identities = 31/76 (40%), Positives = 49/76 (64%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKN 73
          P +V D  R  + G+ A SL++L+ +A   L +S V+ +VL+ DGT VD E++F  LE +
Sbjct: 4  PFRVCDHKRTVRKGLTAASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELLEDD 63

Query: 74 TSLMILSKNDKWTPRS 89
          T LM+L +   W+P+S
Sbjct: 64 TCLMVLEQGQSWSPKS 79

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance. Length = 81

>gnl|CDD|119372 cd06539, CIDE_N_A, CIDE_N domain of CIDE-A proteins

 Score = 65.4 bits (159), Expect = 1e-14
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 12 GLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTL 70
            P +V + +R  + G++A SL++L+++    L ++S +V +VL+ DGT VD EE+F TL
Sbjct: 2  ARPFRVSNHDRSSRRGVMASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTL 61

Query: 71 EKNTSLMILSKNDKWTP 87
            NT  M+L K  KWTP
Sbjct: 62 GDNTHFMVLEKGQKWTP 78

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance. Length = 78

>gnl|CDD|119369 cd06536, CIDE_N_ICAD, CIDE_N domain of ICAD

 Score = 63.7 bits (155), Expect = 6e-14
 Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 3/77 (3%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGM---SSVVKVVLDLDGTEVDEEEYFSTL 70
          PC V + +R+K+ G+ A SL++L  +A   LG    S+ + +VL  DGT V++E+YF  L
Sbjct: 4  PCVVCNVSRQKQHGVAASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCL 63

Query: 71 EKNTSLMILSKNDKWTP 87
            NT  ++L++N+KW P
Sbjct: 64 PPNTKFVLLAENEKWAP 80

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease. Length = 80

>gnl|CDD|119368 cd06535, CIDE_N_CAD, CIDE_N domain of CAD nuclease

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRA--RLKLGMSSVVKVVLDLDGTEVDEEEYFSTLE 71
            K+   N  +K G+ A +LK+L+ +    L+L  +   ++ L  DGTEV  EEYF TL 
Sbjct: 4  CVKIRSLNSAQKYGVAAKNLKELLRKGCRLLQLPCAGS-RLCLYEDGTEV-TEEYFPTLP 61

Query: 72 KNTSLMILSKNDKW 85
           NT L++L+    W
Sbjct: 62 DNTELVLLTPGQSW 75

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
cd06537	81	CIDE_N_B CIDE_N domain of CIDE-B proteins. The CID	100.0
cd06539	78	CIDE_N_A CIDE_N domain of CIDE-A proteins. The CID	100.0
PF02017	78	CIDE-N: CIDE-N domain; InterPro: IPR003508 This do	100.0
cd06538	79	CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The	100.0
cd01615	78	CIDE_N CIDE_N domain, found at the N-terminus of t	100.0
cd06536	80	CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cel	100.0
smart00266	74	CAD Domains present in proteins implicated in post	100.0
cd06535	77	CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE	100.0
PF09033	164	DFF-C: DNA Fragmentation factor 45kDa, C terminal	99.96
PF11834	69	DUF3354: Domain of unknown function (DUF3354); Int	96.32
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	85.79
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	84.44

>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins

Probab=100.00  E-value=1.2e-38  Score=236.29  Aligned_cols=79  Identities=39%  Similarity=0.684  Sum_probs=76.6

Q ss_pred             CCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCCceEEEEccCCcEEechhhhccCCCCceEeeecCCCeeccCC
Q psy12005         11 IGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTPRS   89 (188)
Q Consensus        11 ~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p~~   89 (188)
                      ++|||||||++|++||||+|+||+||+.|||++|+++.+++||||||||+|||||||+|||+||+||+|++||+|+|..
T Consensus         1 ~~rpfkv~~~~r~~kkGV~A~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~tLpdnT~lm~L~~gq~W~p~~   79 (81)
T cd06537           1 PQRPFRVCDHKRTVRKGLTAASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELLEDDTCLMVLEQGQSWSPKS   79 (81)
T ss_pred             CCCceEEecCCCCeeEeEEccCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhhCCCCCEEEEECCCCccCCCC
Confidence            4699999999999999999999999999999999998899999999999999999999999999999999999999964

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.

>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins

Probab=100.00  E-value=1.7e-38  Score=234.17  Aligned_cols=77  Identities=42%  Similarity=0.701  Sum_probs=75.1

Q ss_pred             CCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhccCCCCceEeeecCCCeecc
Q psy12005         11 IGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTP   87 (188)
Q Consensus        11 ~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p   87 (188)
                      ++|||||||++|++||||+|+||+||+.|||++|+++. +++|||+||||+|||||||+|||+||+||+|++||+|+|
T Consensus         1 ~~kpfkV~~~~r~~k~GV~A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~LpdnT~lm~L~~gq~W~p   78 (78)
T cd06539           1 PARPFRVSNHDRSSRRGVMASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMVLEKGQKWTP   78 (78)
T ss_pred             CCCcEEEecCCCCceEEEEecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhCCCCCEEEEECCCCccCC
Confidence            47999999999999999999999999999999999977 899999999999999999999999999999999999987

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.

>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease

Probab=100.00  E-value=2.7e-38  Score=232.93  Aligned_cols=77  Identities=49%  Similarity=0.758  Sum_probs=70.6

Q ss_pred             CCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhccCCCCceEeeecCCCeecc
Q psy12005         11 IGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTP   87 (188)
Q Consensus        11 ~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p   87 (188)
                      ++|||||||++|++||||+|+||+||++|||++|+++. +++|||+||||+|||||||+|||+||+||+|++||+|+|
T Consensus         1 ~~kp~kv~~~~r~~k~Gv~A~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~lm~L~~ge~W~p   78 (78)
T PF02017_consen    1 KPKPFKVRNHDRSVKKGVAASSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTLPDNTVLMLLEKGEKWTP   78 (78)
T ss_dssp             S-EEEEEEETTSSCEEEEEESSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCSSSSEEEEEEESSS--S-
T ss_pred             CCCcEEEecCCCCceEeEEcCCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhCCCCCEEEEECCCCccCC
Confidence            47999999999999999999999999999999999995 999999999999999999999999999999999999997

The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.

>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins

Probab=100.00  E-value=5.2e-38  Score=232.02  Aligned_cols=78  Identities=41%  Similarity=0.658  Sum_probs=75.9

Q ss_pred             CCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCCceEEEEccCCcEEechhhhccCCCCceEeeecCCCeeccC
Q psy12005         11 IGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTPR   88 (188)
Q Consensus        11 ~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p~   88 (188)
                      ++|||||||++|++||||+|+||+||+.|||++|+++.+++|||+||||+|||||||+|||+||+||+|.+||+|+|+
T Consensus         1 ~~kp~kV~~~~rs~k~GV~A~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tLp~nt~l~vL~~gq~W~p~   78 (79)
T cd06538           1 RPRPFRVSNADRSLRKGIMADSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQALADNTVFMVLGKGQKWKPP   78 (79)
T ss_pred             CCCcEEEecCCCceeEeEEcCCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhCCCCcEEEEECCCCccCCC
Confidence            469999999999999999999999999999999999878999999999999999999999999999999999999996

The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.

>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45)

Probab=100.00  E-value=5.6e-38  Score=231.38  Aligned_cols=77  Identities=52%  Similarity=0.770  Sum_probs=74.8

Q ss_pred             CCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhccCCCCceEeeecCCCeecc
Q psy12005         11 IGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTP   87 (188)
Q Consensus        11 ~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p   87 (188)
                      ++|||||||++|++||||+|+||+||+.|||++|+++. +++|||++|||+|||||||+|||+||+||+|++||+|+|
T Consensus         1 ~~kp~kV~~~~r~~k~GV~A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tLp~nT~l~~l~~gq~W~~   78 (78)
T cd01615           1 PLRPFKVCDSDRSRKKGVAASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTLPDNTVLMLLEPGQKWTP   78 (78)
T ss_pred             CCCCEEEecCCCCeeEEEEcCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcCCCCcEEEEECCCCCcCC
Confidence            47999999999999999999999999999999999965 999999999999999999999999999999999999986

These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.

>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD

Probab=100.00  E-value=8.2e-38  Score=231.46  Aligned_cols=77  Identities=40%  Similarity=0.682  Sum_probs=74.5

Q ss_pred             CCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC---ceEEEEccCCcEEechhhhccCCCCceEeeecCCCeecc
Q psy12005         11 IGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS---VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTP   87 (188)
Q Consensus        11 ~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~---~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p   87 (188)
                      .+|||||||++|++||||+|+||+||+.|||++|++++   +++|||+||||+|||||||+|||+||+||+|++||+|+|
T Consensus         1 ~~kpfkV~~~~r~~k~GV~A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~l~~L~~gq~W~p   80 (80)
T cd06536           1 ELKPCVVCNVSRQKQHGVAASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCLPPNTKFVLLAENEKWAP   80 (80)
T ss_pred             CCCceEEecCCCCeeEeEEcCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhCCCCcEEEEECCCCccCC
Confidence            37999999999999999999999999999999999983   699999999999999999999999999999999999987

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.

>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation

Probab=100.00  E-value=6.1e-37  Score=223.97  Aligned_cols=73  Identities=47%  Similarity=0.729  Sum_probs=72.1

Q ss_pred             CceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhccCCCCceEeeecCCCee
Q psy12005         13 LPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKW   85 (188)
Q Consensus        13 KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W   85 (188)
                      |||||||++|++||||+|+||+||+.|||++|+++. +++|||+||||+|||||||+|||+||+||+|++||+|
T Consensus         1 kp~kV~~~~r~~k~GV~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tLp~nt~l~~L~~gq~W   74 (74)
T smart00266        1 RPFKVRDHDRNVRKGVAASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTLPDNTELMALEKGEKW   74 (74)
T ss_pred             CCEEEecCCCCeeEEEEcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcCCCCcEEEEEcCCCCC
Confidence            899999999999999999999999999999999986 9999999999999999999999999999999999999

>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease

Probab=100.00  E-value=2.1e-36  Score=222.57  Aligned_cols=76  Identities=34%  Similarity=0.503  Sum_probs=73.6

Q ss_pred             CCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhccCCCCceEeeecCCCeecc
Q psy12005         11 IGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTP   87 (188)
Q Consensus        11 ~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p   87 (188)
                      ++|||||||++|++||||+|+||+||+.|||++|+++. +++|||+||||+| +||||+|||+||+||+|++||+|++
T Consensus         1 ~~kp~kV~~~~rs~k~GV~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeV-tEeyF~tLp~nT~lmvL~~gq~W~g   77 (77)
T cd06535           1 KPKCVKIRSLNSAQKYGVAAKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEV-TEEYFPTLPDNTELVLLTPGQSWQG   77 (77)
T ss_pred             CCCceEEecCCCCeeEeEEcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEe-hHHHHhcCCCCcEEEEEcCCCccCC
Confidence            47999999999999999999999999999999999987 8999999999999 6999999999999999999999985

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.

>PF09033 DFF-C: DNA Fragmentation factor 45kDa, C terminal domain; InterPro: IPR015121 The C-terminal domain of DNA fragmentation factor 45 kDa (DFF-C) consists of four alpha-helices, which are folded in a helix-packing arrangement, with alpha-2 and alpha-3 packing against a long C-terminal helix (alpha-4)

Probab=99.96  E-value=6.1e-32  Score=220.72  Aligned_cols=89  Identities=9%  Similarity=0.177  Sum_probs=0.0

Q ss_pred             Cccceeccc-----cccch-----hHHHHHHHhhcCce-eeecCccchhhhcCCCCchhhhhccc-hHHHHHHHHHhhhh
Q psy12005         91 TTATLTLER-----NETNN-----DVTGFLTKIHGNNG-VSILGGLELELLSDMDPESLTDIIPD-KLFLDQFKEVSSRY  158 (188)
Q Consensus        91 ~~~~~~l~~-----~~~d~-----~~~~l~~qL~~dl~-i~ll~~~dLq~L~dm~~~~La~~~~~-~~~~~~lqet~~r~  158 (188)
                      |+|++|+++     |++|+     -|+++|||||+||+ ||+|||+|||+|||+||++||.++++ +.++|.||||+|||
T Consensus         1 DGGTAWl~~eS~e~D~~ds~~g~~~WknlArQLK~DLssIILmSEeDLQ~LiDvpcsdLA~el~qs~~k~q~LQ~TLQqV   80 (164)
T PF09033_consen    1 DGGTAWLSQESFEVDETDSGAGADKWKNLARQLKEDLSSIILMSEEDLQVLIDVPCSDLAQELGQSCAKVQGLQNTLQQV   80 (164)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccchhcccccccccccccccchhHHHHHHHHHhhhHHHhccCHHHHHHHhCCChHHHHHHHcccHHHHHHHHHHHHHH
Confidence            467888876     45553     19999999999999 99999999999999999999999988 99999999999999


Q ss_pred             hhhccchhhhhhHHHHHHHHh
Q psy12005        159 FSNKNHHSKETKSEKILHHRY  179 (188)
Q Consensus       159 L~~r~e~rqs~~Ll~ly~~~~  179 (188)
                      |||||||||||+||+||++|.
T Consensus        81 LDrREE~RQSkqLLeLYL~Al  101 (164)
T PF09033_consen   81 LDRREEERQSKQLLELYLQAL  101 (164)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999974

The main function of this domain is the inhibition of DFF40 by binding to its C-terminal catalytic domain through ionic interactions, thereby inhibiting the fragmentation of DNA in the apoptotic process. In addition to blocking the DNase activity of DFF40, the C-terminal region of DFF45 is also important for the DFF40-specific folding chaperone activity, as demonstrated by the ability of DFF45 to refold DFF40 []. ; PDB: 1KOY_A 1IYR_A.

>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement

Probab=96.32  E-value=0.013  Score=42.59  Aligned_cols=40  Identities=35%  Similarity=0.489  Sum_probs=32.7

Q ss_pred             eEeEEeeCCHHHHHHHHHHHhCCCCceEEEEccCCcEEechh
Q psy12005         24 KKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEE   65 (188)
Q Consensus        24 ~kkGV~A~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddEe   65 (188)
                      .|-=...+|++||+.-|+++|+++  .+-++.+||.+|||=+
T Consensus        19 GKvi~lP~SleeLl~ia~~kfg~~--~~~v~~~dgaeIdDI~   58 (69)
T PF11834_consen   19 GKVIWLPDSLEELLKIASEKFGFS--ATKVLNEDGAEIDDID   58 (69)
T ss_pred             CEEEEcCccHHHHHHHHHHHhCCC--ceEEEcCCCCEEeEEE
Confidence            444456799999999999999996  5666789999997644

Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=85.79  E-value=2.3  Score=30.37  Aligned_cols=58  Identities=21%  Similarity=0.256  Sum_probs=32.7

Q ss_pred             cCCCceEeEEee-CCHHHHHHHHHHHhCCCCceEEEEccCCcEEechhh--hccCCCCceEe
Q psy12005         19 DSNREKKIGIVA-LSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEY--FSTLEKNTSLM   77 (188)
Q Consensus        19 ~~~R~~kkGV~A-~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddEeY--F~tLp~nT~lm   77 (188)
                      -..|+.+.=|+. .++.++++.||++|+++. ..-.|...++.||-.-=  |..||+|..|-
T Consensus         4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~-~~~~L~h~~k~ldlslp~R~snL~n~akLe   64 (65)
T PF11470_consen    4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDP-SSYDLKHNNKPLDLSLPFRLSNLPNNAKLE   64 (65)
T ss_dssp             TTS-EEEE---TTSBHHHHHHHHHHHTT--G-GG-EEEETTEEESSS-BHHHH---SS-EEE
T ss_pred             cCCcEEEEEECCCCCHHHHHHHHHHHcCCCc-cceEEEECCEEeccccceeecCCCCCCEEe
Confidence            344444544554 468999999999999985 35566688888874433  55688887764

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>cd00196 UBQ Ubiquitin-like proteins

Probab=84.44  E-value=6.4  Score=23.24  Aligned_cols=48  Identities=19%  Similarity=0.308  Sum_probs=31.4

Q ss_pred             eCCHHHHHHHHHHHhCCCCceEEEEccCCcEEechhhh--ccCCCCceEee
Q psy12005         30 ALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYF--STLEKNTSLMI   78 (188)
Q Consensus        30 A~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddEeYF--~tLp~nT~lm~   78 (188)
                      ..|+++++.+.+++++++. -...|..+|..+++...-  ..+.++..+.+
T Consensus        17 ~~tv~~l~~~i~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~   66 (69)
T cd00196          17 GTTVADLKEKLAKKLGLPP-EQQRLLVNGKILPDSLTLEDYGLQDGDELVL   66 (69)
T ss_pred             CCcHHHHHHHHHHHHCcCh-HHeEEEECCeECCCCCcHHHcCCCCCCEEEE
Confidence            5899999999999999764 333334677777665542  34444444444

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
2eel_A	91	Solution Structure Of The Cide-N Domain Of Human Ce		3e-10
1d4b_A	122	Cide-N Domain Of Human Cide-B Length = 122		3e-09
1f2r_I	100	Nmr Structure Of The Heterodimeric Complex Between		6e-06
1ibx_B	145	Nmr Structure Of Dff40 And Dff45 N-Terminal Domain		1e-05

>pdb|2EEL|A Chain A, Solution Structure Of The Cide-N Domain Of Human Cell Death Activator Cide-A Length = 91

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 10 GIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFS 68
          G   P +V + +R  + G++A SL++L+++    L +++ +V +VL+ DGT VD EE+F 
Sbjct: 7  GPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQ 66
Query: 69 TLEKNTSLMILSKNDKWTPRSETTA 93
          TL  NT  MIL K  KW P   ++ 
Sbjct: 67 TLGDNTHFMILEKGQKWMPSGPSSG 91

>pdb|1D4B|A Chain A, Cide-N Domain Of Human Cide-B Length = 122

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKN 73
           P +V D  R  + G+ A + ++L+ +A   L ++ V+ +VL+ DGT VD E++F  LE +
Sbjct: 37  PFRVCDHKRTIRKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDD 96
Query: 74  TSLMILSKNDKWTP 87
           T LM+L     W+P
Sbjct: 97  TCLMVLQSGQSWSP 110

>pdb|1F2R|I Chain I, Nmr Structure Of The Heterodimeric Complex Between Cad Domains Of Cad And Icad Length = 100

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMS---SVVKVVLDLDGTEVDEEEYFSTL 70
          PC +  ++   + G+ A SL++L ++A   L +    + + +VL  DGT VD+++YF  L
Sbjct: 20 PCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL 79
Query: 71 EKNTSLMILSKNDKWT 86
            NT  + L+ N+KWT
Sbjct: 80 PSNTKFVALACNEKWT 95

>pdb|1IBX|B Chain B, Nmr Structure Of Dff40 And Dff45 N-Terminal Domain Complex Length = 145

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMS---SVVKVVLDLDGTEVDEEEYFSTL 70
           PC +  +   ++ G+ A  L+DL ++A   L +    + V +VL  DGT VD+++YF  L
Sbjct: 65  PCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCL 124
Query: 71  EKNTSLMILSKNDKW 85
             NT  + L+ N+KW
Sbjct: 125 PSNTKFVALASNEKW 139
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
1d4b_A	122	CIDE B, human cell death-inducing effector B; alph	2e-28
2eel_A	91	Cell death activator CIDE-A; CIDE-N domain, cell d	9e-28
1f2r_I	100	Inhibitor of caspase-activated DNAse; alpha-beta r	2e-25
1v0d_A	329	DNA fragmentation factor 40 kDa subunit; hydrolase	8e-23
1ibx_B	145	Chimera of IGG binding protein G and DNA fragmenta	1e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1 Length = 122

 Score =  101 bits (253), Expect = 2e-28
 Identities = 27/81 (33%), Positives = 45/81 (55%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKN 73
           P +V D  R  + G+ A + ++L+ +A   L ++ V+ +VL+ DGT VD E++F  LE +
Sbjct: 37  PFRVCDHKRTIRKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDD 96

Query: 74  TSLMILSKNDKWTPRSETTAT 94
           T LM+L     W+P       
Sbjct: 97  TCLMVLQSGQSWSPTRSGVLH 117

>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 99.2 bits (247), Expect = 9e-28
 Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEK 72
          P +V + +R  + G++A SL++L+++    L +++ +V +VL+ DGT VD EE+F TL  
Sbjct: 11 PFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGD 70

Query: 73 NTSLMILSKNDKWTPRSE 90
          NT  MIL K  KW P   
Sbjct: 71 NTHFMILEKGQKWMPSGP 88

>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1 Length = 100

 Score = 93.1 bits (231), Expect = 2e-25
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSV---VKVVLDLDGTEVDEEEYFSTL 70
          PC +  ++   + G+ A SL++L ++A   L +      + +VL  DGT VD+++YF  L
Sbjct: 20 PCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL 79

Query: 71 EKNTSLMILSKNDKWTP 87
            NT  + L+ N+KWT 
Sbjct: 80 PSNTKFVALACNEKWTY 96

>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A* Length = 329

 Score = 92.0 bits (228), Expect = 8e-23
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 2/129 (1%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSV-VKVVLDLDGTEVDEEEYFSTLEK 72
             K+   +   K G+ A S ++L+ +  ++  +     ++ L  DGTEV  ++ F  L  
Sbjct: 10  CVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEVT-DDCFPGLPN 68

Query: 73  NTSLMILSKNDKWTPRSETTATLTLERNETNNDVTGFLTKIHGNNGVSILGGLELELLSD 132
           +  L++L+  + W              NE +  V     +   +    +   L  +LL  
Sbjct: 69  DAELLLLTAGETWHGYVSDITRFLSVFNEPHAGVIQAARQQLSDEQAPLRQKLLADLLHH 128

Query: 133 MDPESLTDI 141
           +      + 
Sbjct: 129 VSQNITAET 137

>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1 Length = 145

 Score = 87.6 bits (216), Expect = 1e-22
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSV---VKVVLDLDGTEVDEEEYFSTL 70
           PC +  +   ++ G+ A  L+DL ++A   L +      V +VL  DGT VD+++YF  L
Sbjct: 65  PCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCL 124

Query: 71  EKNTSLMILSKNDKWTPRS 89
             NT  + L+ N+KW   +
Sbjct: 125 PSNTKFVALASNEKWAYNN 143

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 37/215 (17%), Positives = 72/215 (33%), Gaps = 43/215 (20%)

Query: 1   MDYGLLEEDGIGLPCKVVDSN-----REKK------IGIVALSLKDLMNRAR--LKLG-- 45
               L  ++   L  K +D       RE        + I+A S++D +        +   
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 46  -MSSVVKVVLD-LDGTEVDEE-EYFSTLEKNTS-----LMILSKNDKWTPRSETTATLTL 97
            ++++++  L+ L+  E  +  +  S    +       L ++     W    ++      
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-----WFDVIKSD----- 403

Query: 98  ERNETNNDVTGFLTKIHGNNGVSILGGLELELLSDMDPE-----SLTD--IIPDKLFLDQ 150
                N      L +         +  + LEL   ++ E     S+ D   IP     D 
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 151 F-KEVSSRYF-SNKNHHSKETK-SEKILHHRYVIL 182
                  +YF S+  HH K  +  E++   R V L
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
2eel_A	91	Cell death activator CIDE-A; CIDE-N domain, cell d	100.0
1d4b_A	122	CIDE B, human cell death-inducing effector B; alph	100.0
1f2r_I	100	Inhibitor of caspase-activated DNAse; alpha-beta r	100.0
1ibx_B	145	Chimera of IGG binding protein G and DNA fragmenta	100.0
1v0d_A	329	DNA fragmentation factor 40 kDa subunit; hydrolase	99.96
1iyr_A	111	DFF45, DNA fragmentation factor alpha subunit; apo	93.27

>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=2.2e-37  Score=232.81  Aligned_cols=84  Identities=38%  Similarity=0.654  Sum_probs=80.3

Q ss_pred             ccCCCCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhccCCCCceEeeecCCCee
Q psy12005          7 EEDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKW   85 (188)
Q Consensus         7 ~e~~~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W   85 (188)
                      .+.+++|||||||++|++||||+|+||+||+.|||++|+++. +++|||+||||+|||||||+|||+||+||+|++||+|
T Consensus         4 ~~~~~~kpfkV~~~~Rs~k~GV~A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp~nT~lmvL~~ge~W   83 (91)
T 2eel_A            4 GSSGPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKW   83 (91)
T ss_dssp             CCSSCCEEEEEECTTSCCCEEEEESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSCSSEEEEEEETTCCC
T ss_pred             ccCCCCCCEEEecCCCCeEEeEEcCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCCCCCEEEEEcCCCcc
Confidence            467889999999999999999999999999999999999976 9999999999999999999999999999999999999


Q ss_pred             ccCCC
Q psy12005         86 TPRSE   90 (188)
Q Consensus        86 ~p~~~   90 (188)
                      +|...
T Consensus        84 ~p~~~   88 (91)
T 2eel_A           84 MPSGP   88 (91)
T ss_dssp             CCCCS
T ss_pred             CCCCC
Confidence            99754

>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1

Probab=100.00  E-value=5.6e-36  Score=235.35  Aligned_cols=83  Identities=33%  Similarity=0.577  Sum_probs=79.7

Q ss_pred             CCCCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCCceEEEEccCCcEEechhhhccCCCCceEeeecCCCeeccC
Q psy12005          9 DGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTPR   88 (188)
Q Consensus         9 ~~~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p~   88 (188)
                      .+++|||||||++|++||||+|+||+||+.|||++|+++.+++|||+||||+|||||||+|||+||+||+|++||+|.|+
T Consensus        32 ~~~~kPfKV~~~~Rs~k~GV~A~SL~EL~~K~~~~l~l~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~gq~W~p~  111 (122)
T 1d4b_A           32 PPPQRPFRVCDHKRTIRKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPT  111 (122)
T ss_dssp             SCCCEEEEEECSSSSCEEEEEECCSSTHHHHHHHHHSCCSSCEEEETTTTEEECSTHHHHHSSSCCCCCEECSSCCCCCC
T ss_pred             CCCCCCEEEecCCCCeEEeEEcCCHHHHHHHHHHHhccCCCcEEEEEeCCcEEechhHhhcCCCCCEEEEecCCCcccCC
Confidence            67789999999999999999999999999999999999669999999999999999999999999999999999999997


Q ss_pred             CCC
Q psy12005         89 SET   91 (188)
Q Consensus        89 ~~~   91 (188)
                      ..+
T Consensus       112 ~~~  114 (122)
T 1d4b_A          112 RSG  114 (122)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            754

>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1

Probab=100.00  E-value=1.5e-35  Score=226.21  Aligned_cols=83  Identities=33%  Similarity=0.540  Sum_probs=76.9

Q ss_pred             ccCCCCCceeEe-cCCCceEeEEeeCCHHHHHHHHHHHhCCCC---ceEEEEccCCcEEechhhhccCCCCceEeeecCC
Q psy12005          7 EEDGIGLPCKVV-DSNREKKIGIVALSLKDLMNRARLKLGMSS---VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKN   82 (188)
Q Consensus         7 ~e~~~~KPfKV~-~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~---~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~g   82 (188)
                      .+.+++|||||| |++|+ ||||+|+||+||+.|||++|+++.   +++|||+||||+|||||||+|||+||+||+|++|
T Consensus        13 ~~~~~~kPfkV~~~~~r~-k~GV~A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~g   91 (100)
T 1f2r_I           13 DDVRPLKPCLLRRNHSRD-QHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVALACN   91 (100)
T ss_dssp             TTSCCCEEEEEEETTEEE-EEEEEESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEECSS
T ss_pred             ccCCCCCCEEEeeCCCcc-EEeEEcCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCCCCCEEEEEcCC
Confidence            388999999999 55555 999999999999999999999964   6999999999999999999999999999999999


Q ss_pred             CeeccCCC
Q psy12005         83 DKWTPRSE   90 (188)
Q Consensus        83 e~W~p~~~   90 (188)
                      |+|+|...
T Consensus        92 e~W~p~~~   99 (100)
T 1f2r_I           92 EKWTYNDS   99 (100)
T ss_dssp             SCCSCTTC
T ss_pred             CccCCCCC
Confidence            99999764

>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1

Probab=100.00  E-value=5.5e-35  Score=235.14  Aligned_cols=83  Identities=33%  Similarity=0.500  Sum_probs=80.1

Q ss_pred             cCCCCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC---ceEEEEccCCcEEechhhhccCCCCceEeeecCCCe
Q psy12005          8 EDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS---VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDK   84 (188)
Q Consensus         8 e~~~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~---~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~   84 (188)
                      |.+++|||||||++|++||||+|+||+||+.|||++|+++.   +++|||++|||+|||||||+|||+||+||+|++||+
T Consensus        59 E~~~~KPfKV~d~~Rs~KkGV~A~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp~nT~LmvL~~gek  138 (145)
T 1ibx_B           59 EIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALASNEK  138 (145)
T ss_dssp             SCSSCCCCBCBCSSCCSBCCCCCSSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSCSSCBEEEECSSCC
T ss_pred             cccCCccEEEecCCCCeEEeEEcCCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCCCCCEEEEECCCCc
Confidence            88999999999999999999999999999999999999964   899999999999999999999999999999999999


Q ss_pred             eccCCC
Q psy12005         85 WTPRSE   90 (188)
Q Consensus        85 W~p~~~   90 (188)
                      |.|+..
T Consensus       139 W~p~~~  144 (145)
T 1ibx_B          139 WAYNNS  144 (145)
T ss_dssp             CCCCCC
T ss_pred             cCCCCC
Confidence            999764

>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*

Probab=99.96  E-value=3.9e-32  Score=241.58  Aligned_cols=105  Identities=19%  Similarity=0.278  Sum_probs=18.6

Q ss_pred             CCCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhccCCCCceEeeecCCCeeccC
Q psy12005         10 GIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTPR   88 (188)
Q Consensus        10 ~~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p~   88 (188)
                      +++|||||||++|++|+||+|+||+||+.|||++|+++. +++|||+||||+| |||||+|||+||+||+|.+||+|+|.
T Consensus         6 ~~~rPfKV~d~~Rs~kkGV~A~SL~EL~~K~~~kl~l~~~~~~LvLeeDGTeV-dEeYF~tLp~nT~LmvL~~gq~W~~~   84 (329)
T 1v0d_A            6 RQPKCVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEV-TDDCFPGLPNDAELLLLTAGETWHGY   84 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCeEEecCCCCccccEEcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEe-eHHHHhcCCCCCEEEEecCCCccccC
Confidence            578999999999999999999999999999999999987 9999999999999 99999999999999999999999999


Q ss_pred             CCCccceeccccccchhHHHHHHHhhc
Q psy12005         89 SETTATLTLERNETNNDVTGFLTKIHG  115 (188)
Q Consensus        89 ~~~~~~~~l~~~~~d~~~~~l~~qL~~  115 (188)
                      ..|+..+..+..+|.+.+.+.|++|=.
T Consensus        85 ~sD~~~~l~a~r~~~~~l~~~a~~lls  111 (329)
T 1v0d_A           85 VSDITRFLSVFNEPHAGVIQAARQQLS  111 (329)
T ss_dssp             CTTHHHHHHHTTSCSSTTHHHHHHHHH
T ss_pred             cchHHHHHHHhhccchHHHHHHHHHhh
Confidence            999888877777876545556666433

>1iyr_A DFF45, DNA fragmentation factor alpha subunit; apoptosis, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; NMR {Homo sapiens} SCOP: a.164.1.1 PDB: 1koy_A*

Probab=93.27  E-value=0.05  Score=41.80  Aligned_cols=66  Identities=20%  Similarity=0.275  Sum_probs=56.3

Q ss_pred             HHHHHhhcCce-eeecCccchhhhcCCCCchhhhhcc-chHHHHHHHHHhhhhhhhccchhhhhhHHH
Q psy12005        108 GFLTKIHGNNG-VSILGGLELELLSDMDPESLTDIIP-DKLFLDQFKEVSSRYFSNKNHHSKETKSEK  173 (188)
Q Consensus       108 ~l~~qL~~dl~-i~ll~~~dLq~L~dm~~~~La~~~~-~~~~~~~lqet~~r~L~~r~e~rqs~~Ll~  173 (188)
                      .+..-||+-++ =..||..|||+...=||.-||..++ +..+++.+|.+|.|.|.+|-|.=||-.-|.
T Consensus        20 ~iL~~LKeK~aPElsLSsqdLElV~kedpkALa~aL~Wd~~kt~avqqAC~qELs~RlQQVQsL~SLr   87 (111)
T 1iyr_A           20 HILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQTQSLHSLR   87 (111)
T ss_dssp             HHHHHHHTTCCTTTTSCHHHHHHHHTSCHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHGGGCCCSCC-
T ss_pred             HHHHHHccCCCccccccHHHHHHHHccCHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566787777 6779999999999999999999996 588999999999999999998888765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1d4ba_	122	d.15.2.1 (A:) Cell death-inducing effector B (CIDE	2e-29
d1c9fa_	87	d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40	3e-24
d1ibxa_	81	d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40	3e-24
d1f2ri_	100	d.15.2.1 (I:) Inhibitor of caspase-activated DNase	4e-24

>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Cell death-inducing effector B (CIDE-B), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (257), Expect = 2e-29
 Identities = 27/77 (35%), Positives = 45/77 (58%)

Query: 14  PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKN 73
           P +V D  R  + G+ A + ++L+ +A   L ++ V+ +VL+ DGT VD E++F  LE +
Sbjct: 37  PFRVCDHKRTIRKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDD 96

Query: 74  TSLMILSKNDKWTPRSE 90
           T LM+L     W+P   
Sbjct: 97  TCLMVLQSGQSWSPTRS 113

>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Caspase-activated DNase (CAD), DFF40, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.0 bits (221), Expect = 3e-24
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEK 72
            K+   +   K G+ A S ++L+ +  ++  +     ++ L  DGTEV  ++ F  L  
Sbjct: 10 CVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEVT-DDCFPGLPN 68

Query: 73 NTSLMILSKNDKWTP 87
          +  L++L+  + W  
Sbjct: 69 DAELLLLTAGETWHG 83

>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Caspase-activated DNase (CAD), DFF40, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (220), Expect = 3e-24
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSV-VKVVLDLDGTEVDEEEYFSTLEK 72
            K+      +K G+   S ++++ +  L+  +     ++ L  DGTE+  E+YF ++  
Sbjct: 7  SVKLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTELT-EDYFPSVPD 65

Query: 73 NTSLMILSKNDKWTP 87
          N  L++L+    W  
Sbjct: 66 NAELVLLTLGQAWQG 80

>d1f2ri_ d.15.2.1 (I:) Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.1 bits (221), Expect = 4e-24
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 14 PCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSV---VKVVLDLDGTEVDEEEYFSTL 70
          PC +  ++   + G+ A SL++L ++A   L +      + +VL  DGT VD+++YF  L
Sbjct: 20 PCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL 79

Query: 71 EKNTSLMILSKNDKWTPRS 89
            NT  + L+ N+KWT   
Sbjct: 80 PSNTKFVALACNEKWTYND 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1d4ba_	122	Cell death-inducing effector B (CIDE-B), N-termina	100.0
d1c9fa_	87	Caspase-activated DNase (CAD), DFF40, N-terminal d	100.0
d1ibxa_	81	Caspase-activated DNase (CAD), DFF40, N-terminal d	100.0
d1f2ri_	100	Inhibitor of caspase-activated DNase (ICAD), DFF45	100.0
d1iyra_	83	C-terminal domain of DFF45/ICAD (DFF-C domain) {Hu	93.88

>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Cell death-inducing effector B (CIDE-B), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-38  Score=245.69  Aligned_cols=88  Identities=31%  Similarity=0.531  Sum_probs=84.0

Q ss_pred             cCCCCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCCceEEEEccCCcEEechhhhccCCCCceEeeecCCCeecc
Q psy12005          8 EDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSSVVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTP   87 (188)
Q Consensus         8 e~~~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p   87 (188)
                      .++++|||||||++|++||||+|+||+||+.|||++|+++.+++||||||||+|||||||+|||+||+||+|++||+|+|
T Consensus        31 ~~~~~RPfKV~~~~Rs~rkGV~A~SL~EL~~K~~~~L~i~~~~~lvLeeDGT~Vd~EeYFqtL~~nT~lmvL~~gqkW~P  110 (122)
T d1d4ba_          31 APPPQRPFRVCDHKRTIRKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSP  110 (122)
T ss_dssp             SSCCCEEEEEECSSSSCEEEEEECCSSTHHHHHHHHHSCCSSCEEEETTTTEEECSTHHHHHSSSCCCCCEECSSCCCCC
T ss_pred             CCCCCCCeEEecCCCCeeeeEEcCCHHHHHHHHHHHhCCCCCeEEEEeCCCCEECchhHhhccCCCCEEEEECCCCccCC
Confidence            56788999999999999999999999999999999999998999999999999999999999999999999999999999


Q ss_pred             CCCCccce
Q psy12005         88 RSETTATL   95 (188)
Q Consensus        88 ~~~~~~~~   95 (188)
                      ..+.+..|
T Consensus       111 ~~~~~~~~  118 (122)
T d1d4ba_         111 TRSGVLHH  118 (122)
T ss_dssp             CCCSCCTT
T ss_pred             CcCcceee
Confidence            98877655

>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Caspase-activated DNase (CAD), DFF40, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-37  Score=231.23  Aligned_cols=84  Identities=20%  Similarity=0.331  Sum_probs=79.8

Q ss_pred             ccCCCCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhccCCCCceEeeecCCCee
Q psy12005          7 EEDGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKW   85 (188)
Q Consensus         7 ~e~~~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W   85 (188)
                      +..+++|||||||++|++||||+|+||+||+.|||++|+++. +++|||+||||+| |||||+|||+||+||+|++||+|
T Consensus         3 a~~~~~kpfKV~~~~r~~k~Gv~A~sL~eL~~K~~~~l~i~~~~~~lvLeeDGT~V-dEeYF~tLp~nT~lm~L~~gq~W   81 (87)
T d1c9fa_           3 AVLRQPKCVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEV-TDDCFPGLPNDAELLLLTAGETW   81 (87)
T ss_dssp             CCCSSCEEEEEEETTSSCCCEEEESSHHHHHHHHHHHTTCCSTTCEEEETTTTCCB-CTTSCSSCCTTEEEEEECTTCCC
T ss_pred             CcCCCCCCeEEccCCCCceEeEEcCCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEe-cHHHHhcCCCCCEEEEECCCCcc
Confidence            356889999999999999999999999999999999999987 8999999999999 79999999999999999999999


Q ss_pred             ccCCCC
Q psy12005         86 TPRSET   91 (188)
Q Consensus        86 ~p~~~~   91 (188)
                      ++..+|
T Consensus        82 ~g~~sd   87 (87)
T d1c9fa_          82 HGYVSD   87 (87)
T ss_dssp             CCSSCC
T ss_pred             CCccCC
Confidence            998764

>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Caspase-activated DNase (CAD), DFF40, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-37  Score=226.71  Aligned_cols=79  Identities=22%  Similarity=0.422  Sum_probs=75.8

Q ss_pred             CCCCCceeEecCCCceEeEEeeCCHHHHHHHHHHHhCCCC-ceEEEEccCCcEEechhhhccCCCCceEeeecCCCeecc
Q psy12005          9 DGIGLPCKVVDSNREKKIGIVALSLKDLMNRARLKLGMSS-VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSKNDKWTP   87 (188)
Q Consensus         9 ~~~~KPfKV~~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~-~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge~W~p   87 (188)
                      ..++|||||||.+|++||||+|+||+||+.|||++|+++. +++|||+||||+| |||||+|||+||+||+|++||+|+|
T Consensus         2 ~~~~kpfKv~~~~r~~k~Gv~A~sL~eL~~K~~~~l~~~~~~~~lvLeeDGT~V-~EeYF~tLp~nT~lm~L~~ge~W~g   80 (81)
T d1ibxa_           2 LQKPKSVKLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTEL-TEDYFPSVPDNAELVLLTLGQAWQG   80 (81)
T ss_dssp             CSCCCCCBEECSSSSCCBBCCCSSHHHHHHHHHHHTTCCTTTSEEEESSSCSCC-CSSSCSSCCSCCCEEEECSSSCCCC
T ss_pred             CCCCCceEEccCCCCceEeEEcCCHHHHHHHHHHHhCCCCcCcEEEEecCCcEe-eHHHHhcCCCCcEEEEECCCCccCC
Confidence            3678999999999999999999999999999999999987 8999999999999 8999999999999999999999998


Q ss_pred             C
Q psy12005         88 R   88 (188)
Q Consensus        88 ~   88 (188)
                      +
T Consensus        81 ~   81 (81)
T d1ibxa_          81 H   81 (81)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1f2ri_ d.15.2.1 (I:) Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: CAD domain
domain: Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.3e-36  Score=225.72  Aligned_cols=84  Identities=31%  Similarity=0.467  Sum_probs=75.5

Q ss_pred             cCCCCCceeEe---cCCCceEeEEeeCCHHHHHHHHHHHhCCCC---ceEEEEccCCcEEechhhhccCCCCceEeeecC
Q psy12005          8 EDGIGLPCKVV---DSNREKKIGIVALSLKDLMNRARLKLGMSS---VVKVVLDLDGTEVDEEEYFSTLEKNTSLMILSK   81 (188)
Q Consensus         8 e~~~~KPfKV~---~~~R~~kkGV~A~SL~EL~~Ka~~~l~l~~---~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~   81 (188)
                      +++.+||||+|   +++|+.||||+|+||+||+.|||++|+++.   +++||||+|||+|||||||+|||+||+||+|++
T Consensus        11 ~~~~~rp~k~~~v~~~~~~~r~GV~A~SL~eL~~K~~~~l~i~~~~~~v~lvLeeDGTeVd~EeYF~tLp~nT~lm~L~~   90 (100)
T d1f2ri_          11 DPDDVRPLKPCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVALAC   90 (100)
T ss_dssp             SCTTSCCCEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEECS
T ss_pred             CCCCCCCcceeeeccCCCcceeeEEcCCHHHHHHHHHHHhCCCCCccceEEEEeCCCcEEccHHHHhcCCCCCEEEEECC
Confidence            44445666666   588899999999999999999999999975   689999999999999999999999999999999


Q ss_pred             CCeeccCCCC
Q psy12005         82 NDKWTPRSET   91 (188)
Q Consensus        82 ge~W~p~~~~   91 (188)
                      ||+|+|..+|
T Consensus        91 gqkW~p~~~d  100 (100)
T d1f2ri_          91 NEKWTYNDSD  100 (100)
T ss_dssp             SSCCSCTTCC
T ss_pred             CCccCCCCCC
Confidence            9999998764

>d1iyra_ a.164.1.1 (A:) C-terminal domain of DFF45/ICAD (DFF-C domain) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: C-terminal domain of DFF45/ICAD (DFF-C domain)
superfamily: C-terminal domain of DFF45/ICAD (DFF-C domain)
family: C-terminal domain of DFF45/ICAD (DFF-C domain)
domain: C-terminal domain of DFF45/ICAD (DFF-C domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.017  Score=40.79  Aligned_cols=63  Identities=19%  Similarity=0.277  Sum_probs=54.2

Q ss_pred             HHHHHhhcCce-eeecCccchhhhcCCCCchhhhhcc-chHHHHHHHHHhhhhhhhccchhhhhh
Q psy12005        108 GFLTKIHGNNG-VSILGGLELELLSDMDPESLTDIIP-DKLFLDQFKEVSSRYFSNKNHHSKETK  170 (188)
Q Consensus       108 ~l~~qL~~dl~-i~ll~~~dLq~L~dm~~~~La~~~~-~~~~~~~lqet~~r~L~~r~e~rqs~~  170 (188)
                      .+..-||+-++ =..||..|||+...=||.-||..++ +..+++.+|.+|.+-|.+|-|.=||-.
T Consensus        16 ~iL~~LKeK~aPElsLSsQdLElV~ke~~~Ala~aL~Wd~~k~~avqqAC~qELs~RlqQVQsL~   80 (83)
T d1iyra_          16 HILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQTQSLH   80 (83)
T ss_dssp             HHHHHHHTTCCTTTTSCHHHHHHHHTSCHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHGGGCCCS
T ss_pred             HHHHHHccCCCccccccHHHHHHHHccCHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777777 6679999999999999999999997 588999999999999999988777654