Psyllid ID: psy12010

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MPRWERFVSLAPDLFPEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHEEccccccccccccccccccccccEEEEccccccccccccccccccccEccccHHHHHHHHccccccccccccccHHHHcHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mprwerfvslapdlfpeysfnwpevhlnesdfinwptvrqynsgmfpcdvcgkkykykwglsrhkrdecgqepkyqcpqcpyrasQKATLKTHMAIKHS
Flexible Loop (DISEMBL)
MPRWERFVSLAPDLFPEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS
Low Complexity Region (SEG)
MPRWERFVSLAPDLFPEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS
Disordered region (IsUnstruct)
***WERFVSLAPDLFPEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHK**********************************
Disordered Region (DISOPRED)
**************FPEYSFNW**********************MFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMA****
Disordered Region (DISEMBL)
MPRWERFVSLAPDLFPEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRAS**************
Disordered Region (DISPRO)
*PRWERFVSLAPDLFPEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPRWERFVSLAPDLFPEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
Q7KQZ4	787	Longitudinals lacking pro	no	N/A	0.575	0.072	0.491	9e-12
P42283	891	Longitudinals lacking pro	no	N/A	0.555	0.061	0.446	2e-10
Q9V5M3	878	Longitudinals lacking pro	no	N/A	0.383	0.043	0.552	2e-08
Q867Z4	970	Longitudinals lacking pro	no	N/A	0.535	0.054	0.444	3e-08
Q505G8	1078	Zinc finger protein 827 O	yes	N/A	0.939	0.086	0.343	1e-07
Q9BE73	1081	Zinc finger protein 827 O	N/A	N/A	0.939	0.086	0.323	4e-07
Q17R98	1081	Zinc finger protein 827 O	yes	N/A	0.939	0.086	0.323	6e-07
Q9P2Y4	722	Zinc finger protein 219 O	no	N/A	0.676	0.092	0.329	1e-06
Q8K083	1302	Zinc finger protein 536 O	no	N/A	0.484	0.036	0.428	1e-06
O15090	1300	Zinc finger protein 536 O	no	N/A	0.484	0.036	0.428	1e-06

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 35/57 (61%)

Query: 42  NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH 98
           N    PC VCG+ YK K  L  H++ ECG+EP++QCP C YRA QK  +  HM   H
Sbjct: 681 NGAGHPCPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 737

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.
Drosophila melanogaster (taxid: 7227)

>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 45  MFPCDVCGKKYKYKWGLSRHKRDECG-QEPKYQCPQCPYRASQKATLKTHMAIKHS 99
           ++ C  CGKKY++K  L RH+  ECG +EP +QCP CPY++ Q+  L  H+   H+
Sbjct: 790 VYECRHCGKKYRWKSTLRRHENVECGGKEPSHQCPYCPYKSKQRGNLGVHVRKHHT 845

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 26/38 (68%)

Query: 46  FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR 83
           + C+VCGK YK K  L RHK  ECG EP  +CP CP++
Sbjct: 709 YACNVCGKTYKIKGSLKRHKNYECGVEPNLKCPHCPHK 746

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 46  FPCDVCGKKYKYKWGLSRHKRDEC-GQEPKYQCPQCPYRASQKATLKTHMAIKH 98
           + C  CGKKY++K  L RH+  EC G+EP + CP C Y+A Q+  L  H+   H
Sbjct: 903 YVCRHCGKKYRWKSTLRRHENVECGGKEPCHPCPYCSYKAKQRGNLGVHVRKHH 956

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q505G8|ZN827_MOUSE Zinc finger protein 827 OS=Mus musculus GN=Znf827 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 3   RWERFVSLAPDLFPEYSFNWPEVHLNESDFINWPTVR-----QYNSGMFPCDVCGKKYKY 57
           R   F S + DL P  S     V   E++ I           ++N  +FPCDVCGK +  
Sbjct: 766 RQSPFTSNSKDLLPGESVLHGRVSAPETEKIVLEAGNGLPSWKFNDQLFPCDVCGKVFGR 825

Query: 58  KWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
           +  LSRH      +E KY+C  CPY A  +A L  H+ +
Sbjct: 826 QQTLSRHLSLHT-EERKYKCHLCPYAAKCRANLNQHLTV 863

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q9BE73|ZN827_MACFA Zinc finger protein 827 OS=Macaca fascicularis GN=ZNF827 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 3   RWERFVSLAPDLFPEYSFNWPEVHLNESDFINWPTVR-----QYNSGMFPCDVCGKKYKY 57
           R   F S + +L P  S     +   E++ I           ++N  +FPCDVCGK +  
Sbjct: 769 RQSPFTSNSKELLPSESVLHGRISAPETEKIVLEAGNGLPSWKFNDQLFPCDVCGKVFGR 828

Query: 58  KWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
           +  LSRH      +E KY+C  CPY A  +A L  H+ +
Sbjct: 829 QQTLSRHLSLHT-EERKYKCHLCPYAAKCRANLNQHLTV 866

May be involved in transcriptional regulation.

Macaca fascicularis (taxid: 9541)

>sp|Q17R98|ZN827_HUMAN Zinc finger protein 827 OS=Homo sapiens GN=ZNF827 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 3   RWERFVSLAPDLFPEYSFNWPEVHLNESDFINWPTVR-----QYNSGMFPCDVCGKKYKY 57
           R   F S + +L P  S     +   E++ I           ++N  +FPCDVCGK +  
Sbjct: 769 RQSPFTSNSKELLPSDSVLHGRISAPETEKIVLEAGNGLPSWKFNDQLFPCDVCGKVFGR 828

Query: 58  KWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
           +  LSRH      +E KY+C  CPY A  +A L  H+ +
Sbjct: 829 QQTLSRHLSLHT-EERKYKCHLCPYAAKCRANLNQHLTV 866

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9P2Y4|ZN219_HUMAN Zinc finger protein 219 OS=Homo sapiens GN=ZNF219 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 15/82 (18%)

Query: 27  LNESDFINWPTVRQYNSGM--------------FPCDVCGKKYKYKWGLSRHKRDECGQE 72
           L+   + N P V   + GM              FPC VCGK++++   L+ H R   G +
Sbjct: 24  LDLQRYSNGPAVSAGSLGMGAVSWSESRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQ 83

Query: 73  PKYQCPQCPYRASQKATLKTHM 94
             +QCP C +RA+Q+A L++H+
Sbjct: 84  -AFQCPHCGHRAAQRALLRSHL 104

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q8K083|ZN536_MOUSE Zinc finger protein 536 OS=Mus musculus GN=Znf536 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 46  FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
           +PC +CGK++++   LS H R   G++P ++CP C +RA+QK  LK H+
Sbjct: 130 YPCPLCGKRFRFNSILSLHMRTHTGEKP-FKCPYCDHRAAQKGNLKIHL 177

May be involved in transcriptional regulation. Recognizes and binds 2 copies of the core DNA sequence 5'-CCCCCA-3'.

Mus musculus (taxid: 10090)

>sp|O15090|ZN536_HUMAN Zinc finger protein 536 OS=Homo sapiens GN=ZNF536 PE=1 SV=3

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 46  FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
           +PC +CGK++++   LS H R   G++P ++CP C +RA+QK  LK H+
Sbjct: 130 YPCPLCGKRFRFNSILSLHMRTHTGEKP-FKCPYCDHRAAQKGNLKIHL 177

May be involved in transcriptional regulation. Recognizes and binds 2 copies of the core DNA sequence 5'-CCCCCA-3'.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
195026424	319	GH20627 [Drosophila grimshawi] gi|193902	0.545	0.169	0.518	5e-11
45552567	771	longitudinals lacking, isoform W [Drosop	0.545	0.070	0.481	2e-10
195120832	325	GI20188 [Drosophila mojavensis] gi|19390	0.545	0.166	0.518	2e-10
24652482	787	longitudinals lacking, isoform C [Drosop	0.575	0.072	0.491	4e-10
29539411	786	Lola protein isoform L [Drosophila melan	0.575	0.072	0.491	4e-10
16648060	331	GH08307p [Drosophila melanogaster]	0.545	0.163	0.481	4e-10
194757982	337	GF11097 [Drosophila ananassae] gi|190622	0.575	0.169	0.491	8e-10
195383684	332	GJ20133 [Drosophila virilis] gi|19414535	0.575	0.171	0.491	8e-10
195026442	332	GH20622 [Drosophila grimshawi] gi|193902	0.575	0.171	0.491	9e-10
194884229	346	GG22734 [Drosophila erecta] gi|190659385	0.575	0.164	0.491	1e-09

>gi|195026424|ref|XP_001986253.1| GH20627 [Drosophila grimshawi] gi|193902253|gb|EDW01120.1| GH20627 [Drosophila grimshawi]

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 35/54 (64%)

Query: 46  FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
           + C+VCGK YK K  L RHK  ECG EP  +CP CP++   K+ L+ HM  KHS
Sbjct: 256 YACNVCGKTYKIKGSLKRHKNYECGVEPTLKCPHCPHKCKYKSDLRKHMNQKHS 309

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552567|ref|NP_995806.1| longitudinals lacking, isoform W [Drosophila melanogaster] gi|29539421|dbj|BAC67593.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539461|dbj|BAC67613.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539501|dbj|BAC67633.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539541|dbj|BAC67653.1| Lola protein isoform Q [Drosophila melanogaster] gi|45445597|gb|AAS64876.1| longitudinals lacking, isoform W [Drosophila melanogaster]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 46  FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
           + C+VCGK YK K  L RHK  ECG EP  +CP CP++   ++ L+ HM  KH+
Sbjct: 709 YACNVCGKTYKIKGSLKRHKNYECGVEPNLKCPHCPHKCKYRSDLRKHMNQKHA 762

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195120832|ref|XP_002004925.1| GI20188 [Drosophila mojavensis] gi|193909993|gb|EDW08860.1| GI20188 [Drosophila mojavensis]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 35/54 (64%)

Query: 46  FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
           + C+VCGK YK K  L RHK  ECG EP  +CP CP++   K+ L+ HM  KHS
Sbjct: 262 YACNVCGKTYKIKGSLKRHKNYECGVEPTLKCPHCPHKCKYKSDLRKHMNQKHS 315

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24652482|ref|NP_724946.1| longitudinals lacking, isoform C [Drosophila melanogaster] gi|78711864|ref|NP_724949.2| longitudinals lacking, isoform B [Drosophila melanogaster] gi|73920870|sp|Q7KQZ4.1|LOLA3_DROME RecName: Full=Longitudinals lacking protein, isoforms A/B/D/L gi|7303724|gb|AAF58773.1| longitudinals lacking, isoform C [Drosophila melanogaster] gi|71911713|gb|AAF58776.3| longitudinals lacking, isoform B [Drosophila melanogaster]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 35/57 (61%)

Query: 42  NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH 98
           N    PC VCG+ YK K  L  H++ ECG+EP++QCP C YRA QK  +  HM   H
Sbjct: 681 NGAGHPCPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 737

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|29539411|dbj|BAC67588.1| Lola protein isoform L [Drosophila melanogaster] gi|29539451|dbj|BAC67608.1| Lola protein isoform L [Drosophila melanogaster] gi|29539491|dbj|BAC67628.1| Lola protein isoform L [Drosophila melanogaster] gi|29539531|dbj|BAC67648.1| Lola protein isoform L [Drosophila melanogaster]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 35/57 (61%)

Query: 42  NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH 98
           N    PC VCG+ YK K  L  H++ ECG+EP++QCP C YRA QK  +  HM   H
Sbjct: 680 NGAGHPCPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 736

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16648060|gb|AAL25295.1| GH08307p [Drosophila melanogaster]

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 46  FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
           + C+VCGK YK K  L RHK  ECG EP  +CP CP++   ++ L+ HM  KH+
Sbjct: 269 YACNVCGKTYKIKGSLKRHKNYECGVEPNLKCPHCPHKCKYRSDLRKHMNQKHA 322

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194757982|ref|XP_001961241.1| GF11097 [Drosophila ananassae] gi|190622539|gb|EDV38063.1| GF11097 [Drosophila ananassae]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 35/57 (61%)

Query: 42  NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH 98
           N    PC VCG+ YK K  L  H++ ECG+EP++QCP C YRA QK  +  HM   H
Sbjct: 221 NGAGHPCPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 277

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195383684|ref|XP_002050556.1| GJ20133 [Drosophila virilis] gi|194145353|gb|EDW61749.1| GJ20133 [Drosophila virilis]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 35/57 (61%)

Query: 42  NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH 98
           N    PC VCG+ YK K  L  H++ ECG+EP++QCP C YRA QK  +  HM   H
Sbjct: 214 NGAGHPCPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 270

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195026442|ref|XP_001986257.1| GH20622 [Drosophila grimshawi] gi|193902257|gb|EDW01124.1| GH20622 [Drosophila grimshawi]

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 35/57 (61%)

Query: 42  NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH 98
           N    PC VCG+ YK K  L  H++ ECG+EP++QCP C YRA QK  +  HM   H
Sbjct: 210 NGAGHPCPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 266

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194884229|ref|XP_001976198.1| GG22734 [Drosophila erecta] gi|190659385|gb|EDV56598.1| GG22734 [Drosophila erecta]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 35/57 (61%)

Query: 42  NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH 98
           N    PC VCG+ YK K  L  H++ ECG+EP++QCP C YRA QK  +  HM   H
Sbjct: 240 NGAGHPCPVCGRIYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 296

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
UNIPROTKB|F1M664	182	Zfp219 "Protein Zfp219" [Rattu	0.606	0.329	0.370	2e-08
UNIPROTKB|G5E9Z1	731	ZNF827 "Putative uncharacteriz	0.585	0.079	0.433	2.4e-08
UNIPROTKB|P80944	148	ZFX "Zinc finger X-chromosomal	0.575	0.385	0.416	2.6e-08
UNIPROTKB|Q29419	148	ZFY "Zinc finger Y-chromosomal	0.575	0.385	0.416	2.6e-08
UNIPROTKB|G3V2E3	111	ZNF219 "Zinc finger protein 21	0.606	0.540	0.370	2.6e-08
UNIPROTKB|G3V2W3	107	ZNF219 "Zinc finger protein 21	0.606	0.560	0.370	2.6e-08
UNIPROTKB|G3V3F2	158	ZNF219 "Zinc finger protein 21	0.606	0.379	0.370	2.6e-08
UNIPROTKB|G3V4M7	145	ZNF219 "Zinc finger protein 21	0.606	0.413	0.370	2.6e-08
UNIPROTKB|G3V2Q8	211	ZNF219 "Zinc finger protein 21	0.606	0.284	0.370	2.9e-08
UNIPROTKB|Q17R98	1081	ZNF827 "Zinc finger protein 82	0.585	0.053	0.433	6.2e-08

UNIPROTKB|F1M664 Zfp219 "Protein Zfp219" [Rattus norvegicus (taxid:10116)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query:    33 INWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKT 92
             + W   R      FPC VCGK++++   L+ H R   G +  +QCP C +RA+Q+A L++
Sbjct:    48 VGWSETRA-GERRFPCPVCGKRFRFNSILALHLRAHPGAQA-FQCPHCGHRAAQRALLRS 105

Query:    93 HM 94
             H+
Sbjct:   106 HL 107

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G5E9Z1 ZNF827 "Putative uncharacterized protein LOC152485" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
 Identities = 26/60 (43%), Positives = 36/60 (60%)

Query:    40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
             ++N  +FPCDVCGK +  +  LSRH      +E KY+C  CPY A  +A L  H+ + HS
Sbjct:   461 KFNDQLFPCDVCGKVFGRQQTLSRHLSLHT-EERKYKCHLCPYAAKCRANLNQHLTV-HS 518

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|P80944 ZFX "Zinc finger X-chromosomal protein" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 25/60 (41%), Positives = 36/60 (60%)

Query:    42 NSGMFP--CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
             +S  FP  C  CGK +++   L +H R   G++P YQC  C YR++  + LKTH+  KHS
Sbjct:    70 HSKNFPHICVECGKGFRHPSELKKHMRIHTGEKP-YQCQYCEYRSADSSNLKTHVKTKHS 128

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q29419 ZFY "Zinc finger Y-chromosomal protein" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 25/60 (41%), Positives = 36/60 (60%)

Query:    42 NSGMFP--CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
             +S  FP  C  CGK +++   L +H R   G++P YQC  C YR++  + LKTH+  KHS
Sbjct:    70 HSKNFPHICVECGKGFRHPSELKKHMRIHTGEKP-YQCQYCEYRSADSSNLKTHVKTKHS 128

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G3V2E3 ZNF219 "Zinc finger protein 219" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query:    33 INWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKT 92
             ++W   R      FPC VCGK++++   L+ H R   G +  +QCP C +RA+Q+A L++
Sbjct:    45 VSWSESRA-GERRFPCPVCGKRFRFNSILALHLRAHPGAQA-FQCPHCGHRAAQRALLRS 102

Query:    93 HM 94
             H+
Sbjct:   103 HL 104

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G3V2W3 ZNF219 "Zinc finger protein 219" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query:    33 INWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKT 92
             ++W   R      FPC VCGK++++   L+ H R   G +  +QCP C +RA+Q+A L++
Sbjct:    45 VSWSESRA-GERRFPCPVCGKRFRFNSILALHLRAHPGAQA-FQCPHCGHRAAQRALLRS 102

Query:    93 HM 94
             H+
Sbjct:   103 HL 104

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G3V3F2 ZNF219 "Zinc finger protein 219" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query:    33 INWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKT 92
             ++W   R      FPC VCGK++++   L+ H R   G +  +QCP C +RA+Q+A L++
Sbjct:    91 VSWSESRA-GERRFPCPVCGKRFRFNSILALHLRAHPGAQA-FQCPHCGHRAAQRALLRS 148

Query:    93 HM 94
             H+
Sbjct:   149 HL 150

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G3V4M7 ZNF219 "Zinc finger protein 219" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query:    33 INWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKT 92
             ++W   R      FPC VCGK++++   L+ H R   G +  +QCP C +RA+Q+A L++
Sbjct:    82 VSWSESRA-GERRFPCPVCGKRFRFNSILALHLRAHPGAQA-FQCPHCGHRAAQRALLRS 139

Query:    93 HM 94
             H+
Sbjct:   140 HL 141

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G3V2Q8 ZNF219 "Zinc finger protein 219" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query:    33 INWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKT 92
             ++W   R      FPC VCGK++++   L+ H R   G +  +QCP C +RA+Q+A L++
Sbjct:    45 VSWSESRA-GERRFPCPVCGKRFRFNSILALHLRAHPGAQA-FQCPHCGHRAAQRALLRS 102

Query:    93 HM 94
             H+
Sbjct:   103 HL 104

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q17R98 ZNF827 "Zinc finger protein 827" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
 Identities = 26/60 (43%), Positives = 36/60 (60%)

Query:    40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
             ++N  +FPCDVCGK +  +  LSRH      +E KY+C  CPY A  +A L  H+ + HS
Sbjct:   811 KFNDQLFPCDVCGKVFGRQQTLSRHLSLHT-EERKYKCHLCPYAAKCRANLNQHLTV-HS 868

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
KOG2462|consensus	279		99.83
KOG2462|consensus	279		99.75
KOG3623|consensus	1007		99.56
KOG3576|consensus	267		99.37
KOG3623|consensus	1007		99.28
PHA02768	55	hypothetical protein; Provisional	99.25
PHA00733	128	hypothetical protein	99.2
KOG1074|consensus	958		99.2
KOG3576|consensus	267		99.13
KOG1074|consensus	958		99.03
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.81
PHA00732	79	hypothetical protein	98.72
PHA00616	44	hypothetical protein	98.63
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.53
KOG3608|consensus	467		98.49
PHA00616	44	hypothetical protein	98.46
KOG3608|consensus	467		98.43
KOG3993|consensus	500		98.42
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.34
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.34
PHA02768	55	hypothetical protein; Provisional	98.33
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.28
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.19
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.17
PLN03086	567	PRLI-interacting factor K; Provisional	98.02
PHA00733	128	hypothetical protein	98.02
PLN03086	567	PRLI-interacting factor K; Provisional	97.99
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.97
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.9
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.9
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.77
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.76
smart00355	26	ZnF_C2H2 zinc finger.	97.7
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.51
smart00355	26	ZnF_C2H2 zinc finger.	97.5
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.45
PRK04860	160	hypothetical protein; Provisional	97.43
KOG3993|consensus	500		97.43
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.13
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.12
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.04
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.6
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.54
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.49
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.97
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.43
PHA00732	79	hypothetical protein	94.96
COG5048	467	FOG: Zn-finger [General function prediction only]	94.75
KOG2893|consensus	341		94.47
COG5189	423	SFP1 Putative transcriptional repressor regulating	93.77
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	93.46
KOG1146|consensus	1406		93.4
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	93.03
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	92.53
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	92.14
KOG2186|consensus	276		91.81
COG1592	166	Rubrerythrin [Energy production and conversion]	91.65
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	91.34
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	90.94
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	90.8
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.56
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	90.52
PRK04860	160	hypothetical protein; Provisional	88.66
smart00531	147	TFIIE Transcription initiation factor IIE.	88.5
COG4049	65	Uncharacterized protein containing archaeal-type C	88.28
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	88.23
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	87.97
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	87.83
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	87.71
COG4957	148	Predicted transcriptional regulator [Transcription	87.7
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	87.59
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	87.08
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	86.96
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	86.33
COG4049	65	Uncharacterized protein containing archaeal-type C	86.24
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	86.23
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	85.67
COG5048	467	FOG: Zn-finger [General function prediction only]	85.56
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	85.03
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	84.95
PRK06266	178	transcription initiation factor E subunit alpha; V	84.61
PRK09678	72	DNA-binding transcriptional regulator; Provisional	83.66
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	83.32
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	82.59
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	82.42
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	82.11
COG4306	160	Uncharacterized protein conserved in bacteria [Fun	80.52

>KOG2462|consensus

Probab=99.83  E-value=2.7e-21  Score=119.36  Aligned_cols=80  Identities=18%  Similarity=0.271  Sum_probs=73.5

Q ss_pred             CCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHH
Q psy12010         16 PEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMA   95 (99)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~   95 (99)
                      ....|..|+..|....+++.|.+.|+|+|||.|+.|++.|.++++|..||+.|.+.++ |+|..|+|+|...+.|.+|..
T Consensus       186 l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~-~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  186 LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKK-HQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCcc-ccCcchhhHHHHHHHHHHhhh
Confidence            4567888889999999999999999999999999999999999999999999999887 999999999999999999975


Q ss_pred             h
Q psy12010         96 I   96 (99)
Q Consensus        96 ~   96 (99)
                      .
T Consensus       265 S  265 (279)
T KOG2462|consen  265 S  265 (279)
T ss_pred             h
Confidence            3

>KOG2462|consensus

Probab=99.75  E-value=7e-19  Score=108.78  Aligned_cols=82  Identities=21%  Similarity=0.468  Sum_probs=71.3

Q ss_pred             CCCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHH
Q psy12010         15 FPEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM   94 (99)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~   94 (99)
                      .....|..|+.....-..+..|.+.|+  -+++|.+|||.|.+.|-|+.|+|.|+|++| |.|..|+++|.++++|..|+
T Consensus       159 ~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKP-F~C~hC~kAFADRSNLRAHm  235 (279)
T KOG2462|consen  159 KKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKP-FSCPHCGKAFADRSNLRAHM  235 (279)
T ss_pred             cccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccccCCCC-ccCCcccchhcchHHHHHHH
Confidence            345567777777677677777777775  679999999999999999999999999887 99999999999999999999


Q ss_pred             HhhcC
Q psy12010         95 AIKHS   99 (99)
Q Consensus        95 ~~~~~   99 (99)
                      ++|.+
T Consensus       236 QTHS~  240 (279)
T KOG2462|consen  236 QTHSD  240 (279)
T ss_pred             HhhcC
Confidence            99864

>KOG3623|consensus

Probab=99.56  E-value=4.4e-16  Score=106.76  Aligned_cols=83  Identities=23%  Similarity=0.424  Sum_probs=75.7

Q ss_pred             CCCCCCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHH
Q psy12010         12 PDLFPEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLK   91 (99)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~   91 (99)
                      -.....|.|+-|+..|.....+..|+=.|+|.+||+|.+|.|.|..+.+|..|+|+|.|+++ |+|..|+|+|+....+-
T Consensus       889 kte~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKP-fQCdKClKRFSHSGSYS  967 (1007)
T KOG3623|consen  889 KTEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKP-FQCDKCLKRFSHSGSYS  967 (1007)
T ss_pred             cCccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCc-chhhhhhhhcccccchH
Confidence            34456678999999999988899999999999999999999999999999999999999887 99999999999999998


Q ss_pred             HHHH
Q psy12010         92 THMA   95 (99)
Q Consensus        92 ~H~~   95 (99)
                      .|+.
T Consensus       968 QHMN  971 (1007)
T KOG3623|consen  968 QHMN  971 (1007)
T ss_pred             hhhc
Confidence            8873

>KOG3576|consensus

Probab=99.37  E-value=2.1e-14  Score=86.08  Aligned_cols=80  Identities=23%  Similarity=0.468  Sum_probs=70.4

Q ss_pred             CCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhc
Q psy12010         19 SFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      .|..|..-|.-..++..|..-|...|.+-|..||+.|...-+|++|++.|+|.+| |+|..|+++|.++..|..|.+..|
T Consensus       119 tCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrp-ykc~~c~kaftqrcsleshl~kvh  197 (267)
T KOG3576|consen  119 TCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRP-YKCSLCEKAFTQRCSLESHLKKVH  197 (267)
T ss_pred             eeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccc-cchhhhhHHHHhhccHHHHHHHHc
Confidence            6666777788888888888888888999999999999999999999999999776 999999999999999999988665


Q ss_pred             C
Q psy12010         99 S   99 (99)
Q Consensus        99 ~   99 (99)
                      |
T Consensus       198 g  198 (267)
T KOG3576|consen  198 G  198 (267)
T ss_pred             C
Confidence            4

>KOG3623|consensus

Probab=99.28  E-value=2.7e-13  Score=93.38  Aligned_cols=80  Identities=26%  Similarity=0.512  Sum_probs=62.4

Q ss_pred             CCCCCCCCCccccCCcccccCccccc-------------cCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCC
Q psy12010         15 FPEYSFNWPEVHLNESDFINWPTVRQ-------------YNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCP   81 (99)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~   81 (99)
                      -+..+|..|...|.-...+..|...|             ...+-|+|.+|||.|..+.+|+.|+|+|.|+++ |.|..|+
T Consensus       238 e~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKP-feCpnCk  316 (1007)
T KOG3623|consen  238 EPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKP-FECPNCK  316 (1007)
T ss_pred             CCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhheeecCCCC-cCCcccc
Confidence            34556777766665544444444433             235679999999999999999999999999887 9999999


Q ss_pred             ccccChhHHHHHHH
Q psy12010         82 YRASQKATLKTHMA   95 (99)
Q Consensus        82 ~~f~~~~~l~~H~~   95 (99)
                      |+|+....+-.|+.
T Consensus       317 KRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  317 KRFSHSGSYSSHMS  330 (1007)
T ss_pred             cccccCCccccccc
Confidence            99999888877764

>PHA02768 hypothetical protein; Provisional

Probab=99.25  E-value=3.4e-12  Score=61.74  Aligned_cols=43  Identities=16%  Similarity=0.413  Sum_probs=39.3

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHH
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLK   91 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~   91 (99)
                      |+|+.||+.|....+|..|++.|+  ++ ++|..|++.|...+.|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~-~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TN-LKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--Cc-ccCCcccceecccceeE
Confidence            799999999999999999999998  45 99999999999887764

>PHA00733 hypothetical protein

Probab=99.20  E-value=2e-11  Score=69.46  Aligned_cols=56  Identities=20%  Similarity=0.360  Sum_probs=50.1

Q ss_pred             cCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         41 YNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        41 ~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .+.++|.|+.|++.|.....|..|++.+.  .+ |.|.+|++.|.....|.+|+...|+
T Consensus        69 ~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~--~~-~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         69 KAVSPYVCPLCLMPFSSSVSLKQHIRYTE--HS-KVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCCCccCCCCCCcCCCHHHHHHHHhcCC--cC-ccCCCCCCccCCHHHHHHHHHHhcC
Confidence            45889999999999999999999999762  44 9999999999999999999987764

>KOG1074|consensus

Probab=99.20  E-value=2.7e-12  Score=89.47  Aligned_cols=88  Identities=17%  Similarity=0.275  Sum_probs=73.1

Q ss_pred             CCCCCCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCC---CCcccCC---CCCcccc
Q psy12010         12 PDLFPEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQ---EPKYQCP---QCPYRAS   85 (99)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~---~~~~~c~---~C~~~f~   85 (99)
                      ....+...|..|-+.++-...++.|-+.|+|++||+|.+||+.|..+.+|+.|+.+|...   +..+.|+   .|.+.|.
T Consensus       600 ~~~TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kft  679 (958)
T KOG1074|consen  600 NKRTDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFT  679 (958)
T ss_pred             cccCCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccc
Confidence            444555677778888888888999999999999999999999999999999999988652   1237788   8989999


Q ss_pred             ChhHHHHHHHhhcC
Q psy12010         86 QKATLKTHMAIKHS   99 (99)
Q Consensus        86 ~~~~l~~H~~~~~~   99 (99)
                      ..-.|..|+++|.+
T Consensus       680 n~V~lpQhIriH~~  693 (958)
T KOG1074|consen  680 NAVTLPQHIRIHLG  693 (958)
T ss_pred             ccccccceEEeecC
Confidence            98899999998863

>KOG3576|consensus

Probab=99.13  E-value=2.7e-11  Score=72.84  Aligned_cols=80  Identities=18%  Similarity=0.383  Sum_probs=68.2

Q ss_pred             CCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCC----------CCcccCCCCCccccChh
Q psy12010         19 SFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQ----------EPKYQCPQCPYRASQKA   88 (99)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~----------~~~~~c~~C~~~f~~~~   88 (99)
                      -|.+|+.-|+..-.++.|.+.|+|.+||+|..|++.|.+...|..|.+-.+|.          .+.|.|++||..-....
T Consensus       147 lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e  226 (267)
T KOG3576|consen  147 LCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPE  226 (267)
T ss_pred             HHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChh
Confidence            46678888888888999999999999999999999999999999998854442          22499999999988888


Q ss_pred             HHHHHHHhhc
Q psy12010         89 TLKTHMAIKH   98 (99)
Q Consensus        89 ~l~~H~~~~~   98 (99)
                      .+..|+..||
T Consensus       227 ~~~~h~~~~h  236 (267)
T KOG3576|consen  227 VYYLHLKLHH  236 (267)
T ss_pred             HHHHHHHhcC
Confidence            8888888776

>KOG1074|consensus

Probab=99.03  E-value=3.6e-11  Score=84.01  Aligned_cols=52  Identities=33%  Similarity=0.632  Sum_probs=48.9

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhc
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      .+|.+|.+.|...+.|+.|.|.|+|++| |+|.+||.+|.++.+|+.|...|+
T Consensus       354 hkCr~CakvfgS~SaLqiHlRSHTGERP-fqCnvCG~~FSTkGNLKvH~~rH~  405 (958)
T KOG1074|consen  354 HKCRFCAKVFGSDSALQIHLRSHTGERP-FQCNVCGNRFSTKGNLKVHFQRHR  405 (958)
T ss_pred             chhhhhHhhcCchhhhhhhhhccCCCCC-eeecccccccccccceeeeeeecc
Confidence            6899999999999999999999999887 999999999999999999987765

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.81  E-value=2.7e-09  Score=44.42  Aligned_cols=26  Identities=42%  Similarity=0.898  Sum_probs=21.6

Q ss_pred             HHHhhhhhhhCCCCcccCCCCCccccC
Q psy12010         60 GLSRHKRDECGQEPKYQCPQCPYRASQ   86 (99)
Q Consensus        60 ~l~~h~~~h~~~~~~~~c~~C~~~f~~   86 (99)
                      +|..|++.|+++++ |.|+.|++.|..
T Consensus         1 ~l~~H~~~H~~~k~-~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKP-YKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSS-EEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCC-CCCCCCcCeeCc
Confidence            47889999999777 999999988863

...

>PHA00732 hypothetical protein

Probab=98.72  E-value=9.9e-09  Score=53.72  Aligned_cols=46  Identities=28%  Similarity=0.595  Sum_probs=38.4

Q ss_pred             ceeCCcccccccchhHHHhhhhh-hhCCCCcccCCCCCccccChhHHHHHHHhh
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRD-ECGQEPKYQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~-h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      ||.|..|++.|.....|..|++. |.   + +.|+.|++.|.   .|..|.++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~-~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---L-TKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---C-CccCCCCCEeC---Chhhhhccc
Confidence            58899999999999999999984 54   3 78999999998   477777543

>PHA00616 hypothetical protein

Probab=98.63  E-value=1.4e-08  Score=47.00  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      ||+|..||+.|..+..|..|++.|+|.++ +.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~-~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK-LTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCc-cceeE
Confidence            68999999999999999999999999877 88764

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.53  E-value=2e-07  Score=45.39  Aligned_cols=52  Identities=29%  Similarity=0.545  Sum_probs=40.5

Q ss_pred             ceeCCcccccccchhHHHhhhhh-hhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRD-ECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~-h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|.|++|++ .-....|..|... |......+.|+.|...+.  .+|..|+.++|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            489999999 4556789999774 555444499999988655  489999999885

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG3608|consensus

Probab=98.49  E-value=1.6e-08  Score=65.47  Aligned_cols=77  Identities=25%  Similarity=0.430  Sum_probs=56.6

Q ss_pred             CCCC--CccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCC-CCcccCCCCCccccChhHHHHHHH
Q psy12010         19 SFNW--PEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQ-EPKYQCPQCPYRASQKATLKTHMA   95 (99)
Q Consensus        19 ~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~-~~~~~c~~C~~~f~~~~~l~~H~~   95 (99)
                      .|+|  |...+.+...++.|.+.|+++|...|+.||..|..+..|..|.+..+.. ..+|+|..|.|.|.+...|..|+.
T Consensus       179 ~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~  258 (467)
T KOG3608|consen  179 MCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVV  258 (467)
T ss_pred             eccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHH
Confidence            4444  5666777778999999999999999999999999999999998855431 223666666666655555555544

>PHA00616 hypothetical protein

Probab=98.46  E-value=7.8e-08  Score=44.52  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=24.7

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||+|..||+.|...+.|..|++.|||
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg   26 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHK   26 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcC
Confidence            59999999999999999999999986

>KOG3608|consensus

Probab=98.43  E-value=3.2e-08  Score=64.13  Aligned_cols=56  Identities=21%  Similarity=0.497  Sum_probs=28.3

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC--CCccccChhHHHHHHHhh
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ--CPYRASQKATLKTHMAIK   97 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~--C~~~f~~~~~l~~H~~~~   97 (99)
                      |...|||+|+.|.+.|...+.|..|...|. +.. |.|+.  |..+|.+...|.+|.+-+
T Consensus       287 Hs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~-y~C~h~~C~~s~r~~~q~~~H~~ev  344 (467)
T KOG3608|consen  287 HSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTV-YQCEHPDCHYSVRTYTQMRRHFLEV  344 (467)
T ss_pred             hccCCCccccchhhhhccHHHHHHHHHhcc-ccc-eecCCCCCcHHHHHHHHHHHHHHHh
Confidence            444555555555555555555555555444 122 55543  555555555555555433

>KOG3993|consensus

Probab=98.42  E-value=1.4e-08  Score=66.96  Aligned_cols=86  Identities=14%  Similarity=0.270  Sum_probs=62.5

Q ss_pred             CCCCCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCC--------C------------
Q psy12010         13 DLFPEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQ--------E------------   72 (99)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~--------~------------   72 (99)
                      ..+..+.|..|+.-+.+.-.+..|.=...---.|.|++|+|.|.+..+|..|.|.|...        .            
T Consensus       263 n~iGdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~  342 (500)
T KOG3993|consen  263 NVIGDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEV  342 (500)
T ss_pred             ccHHHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhh
Confidence            34555666667666555444444432222224599999999999999999999988521        1            


Q ss_pred             ------------CcccCCCCCccccChhHHHHHHHhhc
Q psy12010         73 ------------PKYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        73 ------------~~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                                  ..|.|..|+|.|.....|..|+.+|+
T Consensus       343 ~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  343 QEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             hhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhh
Confidence                        13889999999999999999988876

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.34  E-value=5.8e-08  Score=40.34  Aligned_cols=24  Identities=17%  Similarity=0.426  Sum_probs=20.4

Q ss_pred             cCccccccCCCceeCCcccccccc
Q psy12010         34 NWPTVRQYNSGMFPCDVCGKKYKY   57 (99)
Q Consensus        34 ~~~~~~~~~~k~~~C~~c~~~f~~   57 (99)
                      ..|.+.|++++||+|+.|++.|..
T Consensus         3 ~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    3 RRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHSSSSSEEESSSSEEESS
T ss_pred             HHHhhhcCCCCCCCCCCCcCeeCc
Confidence            346778999999999999999863

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.34  E-value=3.6e-07  Score=36.68  Aligned_cols=22  Identities=45%  Similarity=0.807  Sum_probs=12.7

Q ss_pred             ccCCCCCccccChhHHHHHHHh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAI   96 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~   96 (99)
                      |.|..|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            3455566666666666666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA02768 hypothetical protein; Provisional

Probab=98.33  E-value=3.6e-07  Score=44.29  Aligned_cols=24  Identities=25%  Similarity=0.610  Sum_probs=23.3

Q ss_pred             ccCCCCCccccChhHHHHHHHhhc
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      |+|+.||+.|...++|..|+++|+
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC
Confidence            899999999999999999999987

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.28  E-value=5.9e-07  Score=36.04  Aligned_cols=23  Identities=39%  Similarity=0.892  Sum_probs=21.4

Q ss_pred             eeCCcccccccchhHHHhhhhhh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDE   68 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h   68 (99)
                      |+|+.|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.19  E-value=1.6e-06  Score=34.83  Aligned_cols=24  Identities=38%  Similarity=0.790  Sum_probs=14.4

Q ss_pred             ccCCCCCccccChhHHHHHHHhhc
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      |.|..|++.|.+...|..|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            456666666666666666666654

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.17  E-value=1.1e-06  Score=36.56  Aligned_cols=24  Identities=21%  Similarity=0.483  Sum_probs=15.7

Q ss_pred             ccCCCCCccccChhHHHHHHHhhc
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      |+|..|++.|.+...|..|++.|+
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCccCCccCChhHHHHHhHHhc
Confidence            666666666666666666666554

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.02  E-value=7.5e-06  Score=56.61  Aligned_cols=38  Identities=21%  Similarity=0.432  Sum_probs=16.9

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccc
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA   84 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f   84 (99)
                      +++.|+ ||+.+ ....|..|++.|.+.++ +.|..|++.|
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kp-i~C~fC~~~v  514 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQASTCPLRL-ITCRFCGDMV  514 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhhccCCCCc-eeCCCCCCcc
Confidence            444444 44332 23444444444444333 4454454444

>PHA00733 hypothetical protein

Probab=98.02  E-value=3.1e-06  Score=48.27  Aligned_cols=56  Identities=20%  Similarity=0.215  Sum_probs=42.8

Q ss_pred             cCCCceeCCcccccccchhHHHhhhh-----hhhCCCCcccCCCCCccccChhHHHHHHHhh
Q psy12010         41 YNSGMFPCDVCGKKYKYKWGLSRHKR-----DECGQEPKYQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        41 ~~~k~~~C~~c~~~f~~~~~l~~h~~-----~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      ...+++.|.+|.+.|.....|..+..     .+.+..+ |.|..|++.|.....|..|++++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kP-y~C~~Cgk~Fss~s~L~~H~r~h   96 (128)
T PHA00733         36 PEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSP-YVCPLCLMPFSSSVSLKQHIRYT   96 (128)
T ss_pred             hhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCC-ccCCCCCCcCCCHHHHHHHHhcC
Confidence            35688999999998888766655511     1223344 99999999999999999999854

>PLN03086 PRLI-interacting factor K; Provisional

Probab=97.99  E-value=5.3e-06  Score=57.33  Aligned_cols=75  Identities=19%  Similarity=0.298  Sum_probs=54.3

Q ss_pred             CCCCCccccCCcccccCccccccCCCceeCCcccccccc----------hhHHHhhhhhhhCCCCcccCCCCCccccChh
Q psy12010         19 SFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKY----------KWGLSRHKRDECGQEPKYQCPQCPYRASQKA   88 (99)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~----------~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~   88 (99)
                      .|. |+..+. ...+..|...|...+++.|.+|+..+..          ...|..|.... |.++ +.|..||+.+..+.
T Consensus       480 ~Cp-Cg~~~~-R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt-~~C~~Cgk~Vrlrd  555 (567)
T PLN03086        480 QCP-CGVVLE-KEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRT-APCDSCGRSVMLKE  555 (567)
T ss_pred             cCC-CCCCcc-hhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcc-eEccccCCeeeehh
Confidence            444 544443 3455556677888999999999998852          34788998886 6676 99999999988876


Q ss_pred             HHHHHHHhhc
Q psy12010         89 TLKTHMAIKH   98 (99)
Q Consensus        89 ~l~~H~~~~~   98 (99)
                       |..|+..-|
T Consensus       556 -m~~H~~~~h  564 (567)
T PLN03086        556 -MDIHQIAVH  564 (567)
T ss_pred             -HHHHHHHhh
Confidence             777766544

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.97  E-value=2.1e-06  Score=55.23  Aligned_cols=54  Identities=31%  Similarity=0.573  Sum_probs=42.6

Q ss_pred             CCCceeCCc--ccccccchhHHHhhhhh-h------h-----------CCCCcccCCCCCccccChhHHHHHHH
Q psy12010         42 NSGMFPCDV--CGKKYKYKWGLSRHKRD-E------C-----------GQEPKYQCPQCPYRASQKATLKTHMA   95 (99)
Q Consensus        42 ~~k~~~C~~--c~~~f~~~~~l~~h~~~-h------~-----------~~~~~~~c~~C~~~f~~~~~l~~H~~   95 (99)
                      ++|||+|++  |.|.|..+..|+.|+.- |      .           .+.+||.|++|+|+++..-.|+-|..
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            359999977  88999999999988752 2      0           12245999999999999988987754

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.90  E-value=1.1e-05  Score=32.27  Aligned_cols=23  Identities=39%  Similarity=0.899  Sum_probs=19.5

Q ss_pred             eeCCcccccccchhHHHhhhhhh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDE   68 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h   68 (99)
                      |.|+.|++.|.....|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            68999999999999999999876

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.90  E-value=7.3e-06  Score=34.04  Aligned_cols=26  Identities=42%  Similarity=0.885  Sum_probs=23.4

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +|+|..|++.|.....|..|++.|..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            58999999999999999999987743

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.77  E-value=4.5e-05  Score=36.24  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhhhhhCCCC
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEP   73 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~   73 (99)
                      +..++|-.|++|+..+.+..+|.+|+.+.++.++
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            3456778888888888888888888887766543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.76  E-value=2.3e-05  Score=42.24  Aligned_cols=23  Identities=30%  Similarity=0.722  Sum_probs=19.6

Q ss_pred             ccCCCCCccccChhHHHHHHHhh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      +.|..|++.|.+...|..|++.+
T Consensus        51 ~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   51 FRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             EEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCccCCCCcCHHHHHHHHcCc
Confidence            88999999999999999998864

>smart00355 ZnF_C2H2 zinc finger

Probab=97.70  E-value=4.9e-05  Score=30.68  Aligned_cols=23  Identities=39%  Similarity=0.806  Sum_probs=13.2

Q ss_pred             ccCCCCCccccChhHHHHHHHhh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      |+|..|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            34555666666666666665543

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.51  E-value=7.7e-05  Score=35.47  Aligned_cols=37  Identities=24%  Similarity=0.512  Sum_probs=23.9

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .+.+.+.....|-.|++|+..+.+..+|.+|+.+.|+
T Consensus        13 ~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   13 KKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             ---CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             hHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhc
Confidence            3334444445569999999999999999999998875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.50  E-value=8.4e-05  Score=29.93  Aligned_cols=24  Identities=38%  Similarity=0.743  Sum_probs=21.6

Q ss_pred             eeCCcccccccchhHHHhhhhhhh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            579999999999999999998764

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.45  E-value=0.00011  Score=29.57  Aligned_cols=24  Identities=46%  Similarity=1.064  Sum_probs=15.0

Q ss_pred             ccCCCCCccccChhHHHHHHHhhcC
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |+|..|+.... ...|.+|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            56777776666 6677777777654

>PRK04860 hypothetical protein; Provisional

Probab=97.43  E-value=0.00012  Score=43.29  Aligned_cols=39  Identities=26%  Similarity=0.530  Sum_probs=33.1

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccCh
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQK   87 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~   87 (99)
                      -+|.|. |+.   ....+..|.++|.+.++ |.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~-YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAV-YRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCcc-EECCCCCceeEEe
Confidence            369998 987   66778999999999887 9999999987654

>KOG3993|consensus

Probab=97.43  E-value=2.2e-05  Score=52.26  Aligned_cols=53  Identities=26%  Similarity=0.569  Sum_probs=46.7

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhc
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      .|-|..|-..|...-.|.+|...-.-..- |+|.+|+|.|+-.++|..|.|.|.
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vE-YrCPEC~KVFsCPANLASHRRWHK  319 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVE-YRCPECDKVFSCPANLASHRRWHK  319 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEee-ecCCcccccccCchhhhhhhcccC
Confidence            38999999999999999999886554455 999999999999999999999874

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.13  E-value=0.00032  Score=28.33  Aligned_cols=20  Identities=35%  Similarity=0.777  Sum_probs=10.3

Q ss_pred             eCCcccccccchhHHHhhhh
Q psy12010         47 PCDVCGKKYKYKWGLSRHKR   66 (99)
Q Consensus        47 ~C~~c~~~f~~~~~l~~h~~   66 (99)
                      .|..|++.|.....|..|++
T Consensus         2 ~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCcCCHHHHHHHHC
Confidence            45555555555555555544

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.12  E-value=0.00032  Score=28.34  Aligned_cols=23  Identities=26%  Similarity=0.571  Sum_probs=20.8

Q ss_pred             ccCCCCCccccChhHHHHHHHhh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      |.|..|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            57999999999999999998864

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.04  E-value=0.00025  Score=34.39  Aligned_cols=51  Identities=14%  Similarity=0.271  Sum_probs=38.4

Q ss_pred             CCCCCCCccccCCcccccCccccccCC-CceeCCcccccccchhHHHhhhhhhh
Q psy12010         17 EYSFNWPEVHLNESDFINWPTVRQYNS-GMFPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      ++.|++|...+....+..+-...|..+ +.+.|++|...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKGFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            567888877777777777767777654 6799999998655  38888988754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.60  E-value=0.0023  Score=25.53  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=18.0

Q ss_pred             eeCCcccccccchhHHHhhhhhhh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      |.|+.|+.... ...|..|++.+.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            68999998887 889999998865

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.54  E-value=0.0015  Score=26.95  Aligned_cols=22  Identities=32%  Similarity=0.700  Sum_probs=14.6

Q ss_pred             eeCCcccccccchhHHHhhhhh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRD   67 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~   67 (99)
                      |-|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            4567777777777776666653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.49  E-value=0.001  Score=27.45  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=20.1

Q ss_pred             ccCCCCCccccChhHHHHHHHh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAI   96 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~   96 (99)
                      |-|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.97  E-value=0.0096  Score=24.16  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=12.5

Q ss_pred             ccCCCCCccccChhHHHHHHHh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAI   96 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~   96 (99)
                      .+|..||+.| ..+.|..|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4566677776 34446666553

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.43  E-value=0.014  Score=25.24  Aligned_cols=21  Identities=14%  Similarity=0.572  Sum_probs=13.9

Q ss_pred             ccCCCCCccccChhHHHHHHH
Q psy12010         75 YQCPQCPYRASQKATLKTHMA   95 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~   95 (99)
                      |-|.+|++.|.....+..|++
T Consensus         4 ~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        4 FYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             eEccccCCccCCHHHHHHHHC
Confidence            667777777776666666654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PHA00732 hypothetical protein

Probab=94.96  E-value=0.0098  Score=31.13  Aligned_cols=47  Identities=15%  Similarity=0.222  Sum_probs=33.9

Q ss_pred             CCCCCCccccCCcccccCccc-cccCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         18 YSFNWPEVHLNESDFINWPTV-RQYNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +.|..|+..+.....+..|.. .|.   ++.|+.|++.|.   .+..|.+....
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccCC
Confidence            457778778888777777776 354   358999999998   46677765443

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.75  E-value=0.0069  Score=40.06  Aligned_cols=54  Identities=26%  Similarity=0.544  Sum_probs=44.6

Q ss_pred             CceeCCcccccccchhHHHhhhh--hhhCC--CCcccCC--CCCccccChhHHHHHHHhhc
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKR--DECGQ--EPKYQCP--QCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~--~h~~~--~~~~~c~--~C~~~f~~~~~l~~H~~~~~   98 (99)
                      .++.|..|...|.....|..|.+  .|.+.  ++ +.|.  .|++.|.+...+..|..+|+
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKP-FSCPYSLCGKLFSRNDALKRHILLHT  347 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCc-eeeeccCCCccccccccccCCccccc
Confidence            46788888899999888889988  78887  55 8888  79999988888888877665

>KOG2893|consensus

Probab=94.47  E-value=0.0093  Score=37.50  Aligned_cols=42  Identities=19%  Similarity=0.442  Sum_probs=32.0

Q ss_pred             eCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHH
Q psy12010         47 PCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTH   93 (99)
Q Consensus        47 ~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H   93 (99)
                      .|.+|++.|....-|..|++.    +. |+|..|.|.+.+...|..|
T Consensus        12 wcwycnrefddekiliqhqka----kh-fkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA----KH-FKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeeecccccchhhhhhhhhhh----cc-ceeeeehhhhccCCCceee
Confidence            488999999988888888774    44 8898898877666555544

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=93.77  E-value=0.018  Score=37.73  Aligned_cols=25  Identities=36%  Similarity=0.817  Sum_probs=22.3

Q ss_pred             CCCceeCCcccccccchhHHHhhhh
Q psy12010         42 NSGMFPCDVCGKKYKYKWGLSRHKR   66 (99)
Q Consensus        42 ~~k~~~C~~c~~~f~~~~~l~~h~~   66 (99)
                      ..|||.|++|+|.|.....|+.|+.
T Consensus       395 ~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         395 KDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCCceeccccchhhccCccceeccc
Confidence            4699999999999999999988865

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=93.46  E-value=0.069  Score=28.38  Aligned_cols=25  Identities=28%  Similarity=0.650  Sum_probs=21.8

Q ss_pred             ceeCCcccccccchhHHHhhhhhhh
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      .+.|..|++.|.....|..|++.+.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCcc
Confidence            6899999999999999999999753

>KOG1146|consensus

Probab=93.40  E-value=0.066  Score=40.97  Aligned_cols=55  Identities=24%  Similarity=0.469  Sum_probs=45.7

Q ss_pred             cCCCceeCCcccccccchhHHHhhhhhhh-------------------------CCCCcccCCCCCccccChhHHHHHHH
Q psy12010         41 YNSGMFPCDVCGKKYKYKWGLSRHKRDEC-------------------------GQEPKYQCPQCPYRASQKATLKTHMA   95 (99)
Q Consensus        41 ~~~k~~~C~~c~~~f~~~~~l~~h~~~h~-------------------------~~~~~~~c~~C~~~f~~~~~l~~H~~   95 (99)
                      .-.+.+.|+.|+..|+....|..|||..+                         +.+ +|.|..|...+..+.+|-+|++
T Consensus       461 S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~-p~~C~~C~~stttng~Lsihlq  539 (1406)
T KOG1146|consen  461 SFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGK-PYPCRACNYSTTTNGNLSIHLQ  539 (1406)
T ss_pred             cccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCC-cccceeeeeeeecchHHHHHHH
Confidence            34588999999999999999999999721                         123 4999999999999999999986


Q ss_pred             h
Q psy12010         96 I   96 (99)
Q Consensus        96 ~   96 (99)
                      .
T Consensus       540 S  540 (1406)
T KOG1146|consen  540 S  540 (1406)
T ss_pred             H
Confidence            4

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=93.03  E-value=0.086  Score=22.76  Aligned_cols=24  Identities=38%  Similarity=0.945  Sum_probs=16.5

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCc
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPY   82 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~   82 (99)
                      |.|.+||..+...             ..++.|+.|+.
T Consensus         2 ~~C~~CGy~y~~~-------------~~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGE-------------EAPWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCC-------------cCCCcCcCCCC
Confidence            6788898665332             23489999975

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=92.53  E-value=0.082  Score=30.40  Aligned_cols=22  Identities=27%  Similarity=0.579  Sum_probs=12.7

Q ss_pred             ccCCCCCccccChhHHHHHHHhhcC
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ..|-+||+.|..   |.+|++.|||
T Consensus        73 i~clecGk~~k~---LkrHL~~~~g   94 (132)
T PF05443_consen   73 IICLECGKKFKT---LKRHLRTHHG   94 (132)
T ss_dssp             EE-TBT--EESB---HHHHHHHTT-
T ss_pred             eEEccCCcccch---HHHHHHHccC
Confidence            667777777765   4777777765

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=92.14  E-value=0.13  Score=22.37  Aligned_cols=25  Identities=36%  Similarity=0.877  Sum_probs=17.4

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCc
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPY   82 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~   82 (99)
                      .|.|..||..+.             +..+|..|+.|+.
T Consensus         2 ~~~C~~CG~i~~-------------g~~~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHE-------------GEEAPEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeE-------------CCcCCCcCcCCCC
Confidence            478999996542             3334589999975

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2186|consensus

Probab=91.81  E-value=0.12  Score=32.87  Aligned_cols=44  Identities=25%  Similarity=0.578  Sum_probs=23.2

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHH
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTH   93 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H   93 (99)
                      |.|..||....-. .+..|+....+ .- |.|-.|++.|.. .....|
T Consensus         4 FtCnvCgEsvKKp-~vekH~srCrn-~~-fSCIDC~k~F~~-~sYknH   47 (276)
T KOG2186|consen    4 FTCNVCGESVKKP-QVEKHMSRCRN-AY-FSCIDCGKTFER-VSYKNH   47 (276)
T ss_pred             Eehhhhhhhcccc-chHHHHHhccC-Ce-eEEeeccccccc-chhhhh
Confidence            5566666554433 33446555555 33 666666666655 334444

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=91.65  E-value=0.17  Score=30.27  Aligned_cols=25  Identities=36%  Similarity=0.808  Sum_probs=19.5

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCc
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPY   82 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~   82 (99)
                      +.|.|.+||..             +.| .+|-+|+.||.
T Consensus       133 ~~~vC~vCGy~-------------~~g-e~P~~CPiCga  157 (166)
T COG1592         133 KVWVCPVCGYT-------------HEG-EAPEVCPICGA  157 (166)
T ss_pred             CEEEcCCCCCc-------------ccC-CCCCcCCCCCC
Confidence            37999999854             456 66699999984

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=91.34  E-value=0.18  Score=22.25  Aligned_cols=34  Identities=12%  Similarity=0.259  Sum_probs=22.5

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcccc
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRAS   85 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~   85 (99)
                      ++|+.|+..|.-.....     ...... +.|..|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~-----~~~~~~-v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQL-----GANGGK-VRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHc-----CCCCCE-EECCCCCCEEE
Confidence            57999998887765422     112234 88999988764

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=90.94  E-value=0.22  Score=22.08  Aligned_cols=34  Identities=18%  Similarity=0.467  Sum_probs=22.5

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcccc
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRAS   85 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~   85 (99)
                      ..|+.|+..|.-...-     +-.+... .+|..|+..|.
T Consensus         3 i~CP~C~~~f~v~~~~-----l~~~~~~-vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDK-----LPAGGRK-VRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHHH-----cccCCcE-EECCCCCcEee
Confidence            3688898888765431     2233345 89999988774

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=90.80  E-value=0.2  Score=27.86  Aligned_cols=30  Identities=23%  Similarity=0.577  Sum_probs=21.0

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccCh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQK   87 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~   87 (99)
                      ..|+.||+.|...           + +.|..|+.||..|.-.
T Consensus        10 R~Cp~CG~kFYDL-----------n-k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL-----------N-KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC-----------C-CCCccCCCCCCccCcc
Confidence            3799999887542           2 3348899998887554

The function of members of this family is unknown.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.56  E-value=0.076  Score=32.97  Aligned_cols=45  Identities=36%  Similarity=0.705  Sum_probs=28.1

Q ss_pred             CCceeCCcccccccchhHHHhhhhh---hh-------CCCC----cccCCCCCccccCh
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRD---EC-------GQEP----KYQCPQCPYRASQK   87 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~---h~-------~~~~----~~~c~~C~~~f~~~   87 (99)
                      +|..+|++|++.|....-.....++   ..       +..|    ...|+.||.++...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            4668999999999887544333332   11       1111    26799999887543

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=90.52  E-value=0.067  Score=31.57  Aligned_cols=12  Identities=33%  Similarity=0.866  Sum_probs=6.0

Q ss_pred             eeCCcccccccc
Q psy12010         46 FPCDVCGKKYKY   57 (99)
Q Consensus        46 ~~C~~c~~~f~~   57 (99)
                      ++|+.||.+|..
T Consensus        29 ~~c~~c~~~f~~   40 (154)
T PRK00464         29 RECLACGKRFTT   40 (154)
T ss_pred             eeccccCCcceE
Confidence            455555555443

>PRK04860 hypothetical protein; Provisional

Probab=88.66  E-value=0.1  Score=30.99  Aligned_cols=30  Identities=13%  Similarity=0.339  Sum_probs=24.2

Q ss_pred             CcccccCccccccCCCceeCCcccccccch
Q psy12010         29 ESDFINWPTVRQYNSGMFPCDVCGKKYKYK   58 (99)
Q Consensus        29 ~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~   58 (99)
                      .....+.|.+++.++++|.|..|+..|...
T Consensus       127 ~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        127 HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            444567788889999999999999887654

>smart00531 TFIIE Transcription initiation factor IIE

Probab=88.50  E-value=0.66  Score=27.06  Aligned_cols=39  Identities=21%  Similarity=0.550  Sum_probs=26.4

Q ss_pred             CCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcccc
Q psy12010         42 NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRAS   85 (99)
Q Consensus        42 ~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~   85 (99)
                      +..-|.|+.|+..|.....+..   ... ... |.|+.||....
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~~---~d~-~~~-f~Cp~Cg~~l~  134 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQL---LDM-DGT-FTCPRCGEELE  134 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHHh---cCC-CCc-EECCCCCCEEE
Confidence            4567999999999886543321   011 244 99999998753

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=88.28  E-value=0.28  Score=23.86  Aligned_cols=30  Identities=20%  Similarity=0.469  Sum_probs=24.0

Q ss_pred             cCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         41 YNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        41 ~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      .|+.-+.|+-|+..|....+..+|..--++
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            477788999999999999888888764333

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=88.23  E-value=0.49  Score=21.88  Aligned_cols=26  Identities=31%  Similarity=0.953  Sum_probs=18.1

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcc
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR   83 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~   83 (99)
                      |.|..||..|...           ...+ ..|++||..
T Consensus         3 Y~C~~Cg~~~~~~-----------~~~~-irC~~CG~r   28 (44)
T smart00659        3 YICGECGRENEIK-----------SKDV-VRCRECGYR   28 (44)
T ss_pred             EECCCCCCEeecC-----------CCCc-eECCCCCce
Confidence            7888898876543           2244 889999865

present in RNA polymerase I, II and III

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=87.97  E-value=0.53  Score=20.73  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=21.5

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccc
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA   84 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f   84 (99)
                      ..|+.|+..|.-.....     -..... .+|..|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~i-----p~~g~~-v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEKI-----PPKGRK-VRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHHC-----CCCCcE-EECCCCCCEe
Confidence            46888888887665421     122244 8888888776

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=87.83  E-value=0.56  Score=25.84  Aligned_cols=25  Identities=36%  Similarity=0.883  Sum_probs=22.9

Q ss_pred             ccC----CCCCccccChhHHHHHHHhhcC
Q psy12010         75 YQC----PQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c----~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |.|    ..|+....+...+.+|.+.+||
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            889    8999999999999999999886

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=87.71  E-value=0.25  Score=26.25  Aligned_cols=32  Identities=22%  Similarity=0.557  Sum_probs=21.7

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQ   86 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~   86 (99)
                      ..|.|+.|++.        .+.++-+  . .+.|..|+..|.-
T Consensus        34 ~~~~Cp~C~~~--------~VkR~a~--G-IW~C~kCg~~fAG   65 (89)
T COG1997          34 AKHVCPFCGRT--------TVKRIAT--G-IWKCRKCGAKFAG   65 (89)
T ss_pred             cCCcCCCCCCc--------ceeeecc--C-eEEcCCCCCeecc
Confidence            46899999865        2233333  3 3899999988854

>COG4957 Predicted transcriptional regulator [Transcription]

Probab=87.70  E-value=0.27  Score=28.32  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=12.7

Q ss_pred             ccCCCCCccccChhHHHHHHHhhcC
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ..|-++|+.|.+   |++|+.+|+|
T Consensus        77 IicLEDGkkfKS---LKRHL~t~~g   98 (148)
T COG4957          77 IICLEDGKKFKS---LKRHLTTHYG   98 (148)
T ss_pred             EEEeccCcchHH---HHHHHhcccC
Confidence            445566666653   6666666554

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=87.59  E-value=0.28  Score=21.84  Aligned_cols=31  Identities=19%  Similarity=0.578  Sum_probs=19.9

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcc
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR   83 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~   83 (99)
                      .|.|..||..|......      .. ... ..|+.||..
T Consensus         5 ~y~C~~Cg~~fe~~~~~------~~-~~~-~~CP~Cg~~   35 (41)
T smart00834        5 EYRCEDCGHTFEVLQKI------SD-DPL-ATCPECGGD   35 (41)
T ss_pred             EEEcCCCCCEEEEEEec------CC-CCC-CCCCCCCCc
Confidence            37899999887654322      11 233 688889863

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.08  E-value=0.74  Score=20.94  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=10.4

Q ss_pred             ccCCCCCccccC----hhHHHHHHH
Q psy12010         75 YQCPQCPYRASQ----KATLKTHMA   95 (99)
Q Consensus        75 ~~c~~C~~~f~~----~~~l~~H~~   95 (99)
                      ..|..|++.+..    .+.|.+|++
T Consensus        17 a~C~~C~~~~~~~~~~ts~l~~HL~   41 (45)
T PF02892_consen   17 AKCKYCGKVIKYSSGGTSNLKRHLK   41 (45)
T ss_dssp             EEETTTTEE-----SSTHHHHHHHH
T ss_pred             EEeCCCCeEEeeCCCcHHHHHHhhh
Confidence            556666655443    355666663

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=86.96  E-value=0.29  Score=23.17  Aligned_cols=29  Identities=24%  Similarity=0.700  Sum_probs=17.9

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCc
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPY   82 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~   82 (99)
                      |.|..||..|.....+.      . ... ..|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~~~------~-~~~-~~CP~Cg~   34 (52)
T TIGR02605         6 YRCTACGHRFEVLQKMS------D-DPL-ATCPECGG   34 (52)
T ss_pred             EEeCCCCCEeEEEEecC------C-CCC-CCCCCCCC
Confidence            78888888776542211      1 233 67888875

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=86.33  E-value=0.77  Score=27.20  Aligned_cols=35  Identities=17%  Similarity=0.473  Sum_probs=26.5

Q ss_pred             cCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcccc
Q psy12010         41 YNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRAS   85 (99)
Q Consensus        41 ~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~   85 (99)
                      .++.-|.|+.|+..|.....+.         .- |.|+.||..+.
T Consensus       105 ~~~~~Y~Cp~c~~r~tf~eA~~---------~~-F~Cp~Cg~~L~  139 (158)
T TIGR00373       105 TNNMFFICPNMCVRFTFNEAME---------LN-FTCPRCGAMLD  139 (158)
T ss_pred             cCCCeEECCCCCcEeeHHHHHH---------cC-CcCCCCCCEee
Confidence            3456799999998887766653         23 99999998753

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=86.24  E-value=0.4  Score=23.36  Aligned_cols=29  Identities=24%  Similarity=0.512  Sum_probs=23.2

Q ss_pred             hCCCCcccCCCCCccccChhHHHHHHHhhc
Q psy12010         69 CGQEPKYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        69 ~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      .|+.- +.|+-|++.|...-...+|..--|
T Consensus        13 DGE~~-lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          13 DGEEF-LRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             CCcee-eeCCchhHHHHHhHHHHHHhhHHh
Confidence            35555 899999999999999999976544

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=86.23  E-value=0.75  Score=22.68  Aligned_cols=33  Identities=33%  Similarity=0.872  Sum_probs=19.4

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCc
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPY   82 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~   82 (99)
                      -.|.|+.||+.--....     +--....+ |.|+.||.
T Consensus        26 v~F~CPnCGe~~I~Rc~-----~CRk~g~~-Y~Cp~CGF   58 (61)
T COG2888          26 VKFPCPNCGEVEIYRCA-----KCRKLGNP-YRCPKCGF   58 (61)
T ss_pred             eEeeCCCCCceeeehhh-----hHHHcCCc-eECCCcCc
Confidence            35899999954333221     11112255 99999984

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=85.67  E-value=0.33  Score=22.13  Aligned_cols=29  Identities=24%  Similarity=0.872  Sum_probs=19.5

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCc
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPY   82 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~   82 (99)
                      |.|..||..|.....+      .. ... ..|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~~------~~-~~~-~~CP~Cg~   34 (42)
T PF09723_consen    6 YRCEECGHEFEVLQSI------SE-DDP-VPCPECGS   34 (42)
T ss_pred             EEeCCCCCEEEEEEEc------CC-CCC-CcCCCCCC
Confidence            7899999887664332      12 233 78888986

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=85.56  E-value=0.69  Score=30.61  Aligned_cols=60  Identities=17%  Similarity=0.217  Sum_probs=46.3

Q ss_pred             CCCCCCccccCCcccccCccc--cccCC--CceeCC--cccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         18 YSFNWPEVHLNESDFINWPTV--RQYNS--GMFPCD--VCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~--~~~~~--k~~~C~--~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      ..+..+...+.....+..+..  .|.++  +++.|+  .|++.|.....+..|...|.+... +.+.
T Consensus       290 ~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  355 (467)
T COG5048         290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISP-AKEK  355 (467)
T ss_pred             CCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCc-cccc
Confidence            344445555666666777777  78888  999999  799999999999999999988654 5553

>smart00614 ZnF_BED BED zinc finger

Probab=85.03  E-value=0.84  Score=21.46  Aligned_cols=21  Identities=24%  Similarity=0.602  Sum_probs=13.0

Q ss_pred             ccCCCCCccccCh-----hHHHHHHH
Q psy12010         75 YQCPQCPYRASQK-----ATLKTHMA   95 (99)
Q Consensus        75 ~~c~~C~~~f~~~-----~~l~~H~~   95 (99)
                      ..|..|++.+...     +.|.+|++
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            5566666655433     56777776

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=84.95  E-value=0.68  Score=26.45  Aligned_cols=30  Identities=13%  Similarity=0.088  Sum_probs=20.1

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccCh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQK   87 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~   87 (99)
                      ..|+.||+.|...           + +.|..|+.||..|.-.
T Consensus        10 r~Cp~cg~kFYDL-----------n-k~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        10 RICPNTGSKFYDL-----------N-RRPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccCCCcCcccccc-----------C-CCCccCCCcCCccCcc
Confidence            4788888877542           2 3348888888876544

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=84.61  E-value=1  Score=27.29  Aligned_cols=34  Identities=24%  Similarity=0.627  Sum_probs=25.4

Q ss_pred             CCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcccc
Q psy12010         42 NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRAS   85 (99)
Q Consensus        42 ~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~   85 (99)
                      +..-|.|+.|+..|.....+.         .- |.|+.||..+.
T Consensus       114 ~~~~Y~Cp~C~~rytf~eA~~---------~~-F~Cp~Cg~~L~  147 (178)
T PRK06266        114 NNMFFFCPNCHIRFTFDEAME---------YG-FRCPQCGEMLE  147 (178)
T ss_pred             CCCEEECCCCCcEEeHHHHhh---------cC-CcCCCCCCCCe
Confidence            456799999998887765442         24 99999998753

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=83.66  E-value=0.44  Score=24.52  Aligned_cols=12  Identities=25%  Similarity=0.498  Sum_probs=6.1

Q ss_pred             ccCC--CCCccccC
Q psy12010         75 YQCP--QCPYRASQ   86 (99)
Q Consensus        75 ~~c~--~C~~~f~~   86 (99)
                      ++|.  +||.+|..
T Consensus        28 ~qC~N~eCg~tF~t   41 (72)
T PRK09678         28 HQCQNVNCSATFIT   41 (72)
T ss_pred             eecCCCCCCCEEEE
Confidence            4554  55555543

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=83.32  E-value=0.7  Score=28.83  Aligned_cols=24  Identities=25%  Similarity=0.555  Sum_probs=16.0

Q ss_pred             ccCCCCCccccChhHHHHHHHhhc
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      |.|.+|+|.|.-..-+..|+...|
T Consensus        78 ~~C~lc~KlFkg~eFV~KHI~nKH  101 (214)
T PF04959_consen   78 WRCPLCGKLFKGPEFVRKHIFNKH  101 (214)
T ss_dssp             EEE-SSS-EESSHHHHHHHHHHH-
T ss_pred             ECCCCCCcccCChHHHHHHHhhcC
Confidence            778888888887777777776544

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=82.59  E-value=0.89  Score=19.53  Aligned_cols=26  Identities=35%  Similarity=0.975  Sum_probs=14.7

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcc
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR   83 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~   83 (99)
                      |.|..||..+...           ...+ ..|..||..
T Consensus         1 Y~C~~Cg~~~~~~-----------~~~~-irC~~CG~R   26 (32)
T PF03604_consen    1 YICGECGAEVELK-----------PGDP-IRCPECGHR   26 (32)
T ss_dssp             EBESSSSSSE-BS-----------TSST-SSBSSSS-S
T ss_pred             CCCCcCCCeeEcC-----------CCCc-EECCcCCCe
Confidence            5677777665421           1244 788888864

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=82.42  E-value=0.7  Score=21.34  Aligned_cols=29  Identities=28%  Similarity=0.721  Sum_probs=18.9

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccc
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA   84 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f   84 (99)
                      .|.|+.||..|.....          ... +.|+.||..+
T Consensus         3 ~y~C~~CG~~~~~~~~----------~~~-~~Cp~CG~~~   31 (46)
T PRK00398          3 EYKCARCGREVELDEY----------GTG-VRCPYCGYRI   31 (46)
T ss_pred             EEECCCCCCEEEECCC----------CCc-eECCCCCCeE
Confidence            5788888876654321          113 7888888654

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=82.11  E-value=1  Score=21.35  Aligned_cols=29  Identities=24%  Similarity=0.659  Sum_probs=19.3

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcc
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR   83 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~   83 (99)
                      ..|.|..||+.|...          ..... ..|+.||..
T Consensus         5 ~~Y~C~~Cg~~~~~~----------~~~~~-irCp~Cg~r   33 (49)
T COG1996           5 MEYKCARCGREVELD----------QETRG-IRCPYCGSR   33 (49)
T ss_pred             EEEEhhhcCCeeehh----------hccCc-eeCCCCCcE
Confidence            458999999887211          12133 889999864

>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.52  E-value=0.7  Score=26.39  Aligned_cols=42  Identities=17%  Similarity=0.276  Sum_probs=21.4

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccCh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQK   87 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~   87 (99)
                      ..|+.|....+-......=..+-...++|.-|..||+.|.+.
T Consensus        40 ~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwt   81 (160)
T COG4306          40 TQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWT   81 (160)
T ss_pred             hcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcH
Confidence            456666554433322221111222235567788888888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		9e-05
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		5e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
          + C  CGK +  K  L+RH+R   G++P Y+CP+C    SQ+A L+ H 
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQ 97

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH 98
          C  CGK ++  + L+ H R   G++P Y+C  C Y A+QK +L+ H+   H
Sbjct: 7  CSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHH 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	7e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-10
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-08
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	5e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	9e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	7e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	4e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	8e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	6e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	8e-04

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 53.3 bits (129), Expect = 3e-11
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
          C  C      K  L  H+R  C   P ++C  C +   Q + L  HM  
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKK 59

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 34.0 bits (79), Expect = 7e-04
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 75 YQCPQCPYRASQKATLKTHMAI 96
           +C +C Y  S KA L+ H  I
Sbjct: 10 EKCSECSYSCSSKAALRIHERI 31

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 51.3 bits (123), Expect = 2e-10
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 46 FPCDVCGKKYKYKWGLSRHKR---DECGQEPKYQCPQCPYRASQKATLKTHMAIKHS 99
            C++CG   + K  L+ H+R   +       + C  C  R  +  ++  H +  H 
Sbjct: 8  LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHP 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 46.0 bits (110), Expect = 2e-08
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPK-YQCPQCPYRASQKATLKTHMAIKH 98
          + C VC + Y +     RH      +  K Y CP C    ++K  +  H+ I H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.4 bits (111), Expect = 2e-08
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPK-YQCPQCPYRASQKATLKTHMAIKHS 99
          + C +C  ++     +  H   +  +    + CP C    ++K+ L  H+  +HS
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 42.4 bits (99), Expect = 5e-07
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
          C+ CG + K    L +H R      P Y C  C +    K  L  HM  
Sbjct: 4  CEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKS 51

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 39.7 bits (94), Expect = 9e-06
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
          C+VCGK +  K  L  H R   G +P Y+C  C Y A+  ++L  H+ I
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRI 58

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 38.6 bits (91), Expect = 2e-05
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
          C  C         L++H R    + P ++C  CPY +   + L  H+  
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHLRS 86

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 37.8 bits (89), Expect = 3e-05
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
          CD C   ++YK  L+ HK    G++P Y+C  C  + ++ A LKTH  I
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRI 67

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 38.2 bits (90), Expect = 3e-05
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
            C++CGK ++  + L+RHK    G++P Y CP C  R  +K  +  H+  
Sbjct: 8  VACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRS 57

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 37.5 bits (88), Expect = 7e-05
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPK-YQCPQCPYRASQKATLKTHMAIKHS 99
          + C VCG ++K K  +S H R   G   K Y C  C    S+   L  H+   HS
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 38.8 bits (89), Expect = 4e-05
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 19  SFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP 78
           +       L+ES ++      +     F C +C   +     L +H R     E    CP
Sbjct: 49  TLIHNPQLLDESSYLYRLLASKA-ISQFVCPLCLMPFSSSVSLKQHIRYT---EHTKVCP 104

Query: 79  QCPYRASQKATLKTHMAIKHS 99
            C    +   +   H+  KH+
Sbjct: 105 VCKKEFTSTDSALDHVCKKHN 125

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 37.1 bits (87), Expect = 8e-05
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
          F C +C + +     L+ H R   G++P + C  C  + ++    K H  I
Sbjct: 4  FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDI 53

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
          F C +C + +     L+ H R   G++P + C  C  + ++    K H  I
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTKI 84

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 34.7 bits (81), Expect = 6e-04
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 46 FPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
          + C V  C +++     L+RH R   GQ+P +QC  C    S+   L TH+  
Sbjct: 5  YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRT 56

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 46 FPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
          + C V  C +++     L+RH R   GQ+P +QC  C    S+   L TH+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 46 FPCDVCGKKYKYKWGLSRHKR---DECGQEPKYQCPQCPYRASQKATLKTHMAI 96
          + C  C K ++ K  L  H +   D       + C +C    +++ T+  H   
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 35.9 bits (84), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 48 CDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
          C +CGK +K    LS H        P Y C  C  R  QK+ +K H  I
Sbjct: 4  CKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFI 51

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 35.5 bits (83), Expect = 3e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
          +PC  CGK++  K  + +H     G++P ++C  C    SQ + L TH   
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITHSRK 79

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 46 FPCDVCGKKYKYKWGLSRHKRDEC---GQEPKYQCPQCPYRASQKATLKTHMAI 96
          F C  CGK Y  K  L  H+   C    ++  + C  C     ++  L+ HM  
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLHMVS 88

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 36.3 bits (85), Expect = 3e-04
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
            C  C KK+  K+ L  H R   G++P ++CP+C     +K  L  H 
Sbjct: 8  VECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHE 55

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 33.6 bits (78), Expect = 8e-04
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM 94
          F C+VC + +  +  L RH R    ++P Y C  C    +++  L  H 
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHA 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.87
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.8
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.79
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.77
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.77
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.77
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.75
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.75
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.75
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.74
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.74
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.74
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.73
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.73
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.73
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.72
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.72
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.71
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.7
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.7
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.7
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.69
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.69
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.68
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.68
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.66
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.65
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.65
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.65
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.64
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.64
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.64
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.64
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.62
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.62
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.61
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.61
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.6
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.6
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.6
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.57
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.57
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.56
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.55
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.55
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.55
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.54
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.54
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.53
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.53
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.52
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.52
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.52
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.52
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.51
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.5
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.5
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.48
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.48
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.48
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.48
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.47
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.47
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.47
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.47
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.46
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.46
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.46
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.46
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.46
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.46
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.46
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.46
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.46
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.45
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.45
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.45
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.45
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.45
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.44
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.43
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.43
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.42
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.42
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.41
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.41
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.39
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.39
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.39
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.39
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.35
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.35
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.34
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.34
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.34
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.33
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.33
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.33
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.33
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.32
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.32
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.32
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.32
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.31
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.31
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.31
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.31
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.31
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.3
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.28
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.28
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.28
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.27
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.22
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.22
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.22
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.19
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.18
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.15
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.13
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.12
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.12
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.12
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.1
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.07
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.06
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.05
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.05
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.04
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.04
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.03
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.03
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.02
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.02
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.01
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.01
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.01
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.0
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.0
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.99
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.99
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.99
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.99
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.98
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.98
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.98
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.98
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.97
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.96
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.96
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.95
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.95
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.95
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.95
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.95
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.95
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.95
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.94
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.93
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.92
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.92
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.92
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.91
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.89
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.87
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.86
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.85
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.84
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.82
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.81
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.81
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.8
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.8
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.8
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.8
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.79
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.78
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.76
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.76
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.75
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.75
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.72
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.72
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.71
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.71
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.7
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.7
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.7
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.69
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.69
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.69
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.68
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.68
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.67
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.66
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.66
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.65
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.65
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.65
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.65
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.64
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.64
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.63
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.63
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.62
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.62
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.61
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.61
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.61
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.6
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.02
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.59
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.59
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.58
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.58
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.0
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.57
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.53
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.52
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.52
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.91
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.91
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.89
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.49
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.47
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.45
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.83
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.44
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.42
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.42
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.35
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.25
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.25
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.2
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.44
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.35
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.19
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.46
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.34
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.3
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.47
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	93.98
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.25
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	93.09
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	90.69
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	90.5
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	90.05
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	89.59
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	88.61
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	88.43
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	88.42
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	87.44
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	85.97
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.94
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	85.35
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	84.27
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	83.99
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	83.73
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	83.13
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	82.73
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	82.52
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	82.14
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	82.12
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	81.1
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	80.78

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.87  E-value=1.7e-22  Score=100.42  Aligned_cols=57  Identities=32%  Similarity=0.730  Sum_probs=54.6

Q ss_pred             CCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         42 NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        42 ~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .+|||+|.+||+.|.....|..|+++|+|+++ |.|.+||+.|...+.|.+|+++|+|
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp-~~C~~C~k~F~~~~~L~~H~~~Htg   57 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRP-RSCPECGKCFRDQSEVNRHLKVHQN   57 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCC-EECTTTCCEESSHHHHHHHGGGGSC
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcC-eECCCCCCCcCCHHHHHHHhCccCC
Confidence            37999999999999999999999999999887 9999999999999999999999986

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.80  E-value=8.9e-21  Score=107.81  Aligned_cols=81  Identities=17%  Similarity=0.227  Sum_probs=75.2

Q ss_pred             CCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhh
Q psy12010         18 YSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      +.|..|+..|.....+..|...|+++++|+|++|++.|.....|..|+++|+++++ |.|.+|++.|.....|..|+++|
T Consensus        23 y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~h  101 (133)
T 2lt7_A           23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR-YQCLACGKSFINYQFMSSHIKSV  101 (133)
T ss_dssp             EEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCC-EEESSSCCEESSHHHHHHHHHHH
T ss_pred             eECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCcc-ccCCCCCCCcCCHHHHHHHhHHh
Confidence            57888888888888888899999999999999999999999999999999999777 99999999999999999999998


Q ss_pred             cC
Q psy12010         98 HS   99 (99)
Q Consensus        98 ~~   99 (99)
                      |+
T Consensus       102 h~  103 (133)
T 2lt7_A          102 HS  103 (133)
T ss_dssp             TC
T ss_pred             cC
Confidence            74

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.79  E-value=4.4e-20  Score=96.24  Aligned_cols=81  Identities=21%  Similarity=0.412  Sum_probs=73.8

Q ss_pred             CCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhh
Q psy12010         18 YSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      +.|..|+..+.....+..|...|.++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCC-EECTTTSCEESSHHHHHHHHHHH
T ss_pred             ccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCC-CcCCCcchhhCChHHHHHHHHhh
Confidence            34677778888888888888899999999999999999999999999999999777 99999999999999999999999


Q ss_pred             cC
Q psy12010         98 HS   99 (99)
Q Consensus        98 ~~   99 (99)
                      +|
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            86

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.77  E-value=4.4e-19  Score=96.63  Aligned_cols=84  Identities=19%  Similarity=0.376  Sum_probs=77.1

Q ss_pred             CCCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHH
Q psy12010         15 FPEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM   94 (99)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~   94 (99)
                      -..+.|..|...|.....+..|...|.++++|.|.+|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..|+
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~   93 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP-FKCQECGKGFCQSRTLAVHK   93 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCT-TSCSSSCCCCSSHHHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCC-eECCCcCCcccCHHHHHHHH
Confidence            34567888888888888888899999999999999999999999999999999999777 99999999999999999999


Q ss_pred             HhhcC
Q psy12010         95 AIKHS   99 (99)
Q Consensus        95 ~~~~~   99 (99)
                      ++|++
T Consensus        94 ~~H~~   98 (106)
T 2ee8_A           94 TLHMQ   98 (106)
T ss_dssp             HHTTS
T ss_pred             HHhCC
Confidence            99875

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=4.3e-19  Score=95.06  Aligned_cols=83  Identities=16%  Similarity=0.311  Sum_probs=76.8

Q ss_pred             CCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHH
Q psy12010         16 PEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMA   95 (99)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~   95 (99)
                      ..+.|..|...|.....+..|...|.++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++
T Consensus         7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~   85 (96)
T 2dmd_A            7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHLR   85 (96)
T ss_dssp             CCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCC-EECSSSSCEESSHHHHHHHHT
T ss_pred             cCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCC-ccCCCCCCccCCHHHHHHHHH
Confidence            3467888888888888889999999999999999999999999999999999999777 999999999999999999999


Q ss_pred             hhcC
Q psy12010         96 IKHS   99 (99)
Q Consensus        96 ~~~~   99 (99)
                      +|+|
T Consensus        86 ~h~~   89 (96)
T 2dmd_A           86 SHTG   89 (96)
T ss_dssp             TCCS
T ss_pred             HhcC
Confidence            9885

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=7.8e-19  Score=89.80  Aligned_cols=63  Identities=29%  Similarity=0.500  Sum_probs=58.5

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ....|+++++|.|++|++.|.....|..|++.|.+.++ |.|.+|++.|.....|.+|+++|++
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCC-EECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCC-eECCCCCcccCCHHHHHHHHHhcCC
Confidence            35578899999999999999999999999999999777 9999999999999999999999875

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.5e-18  Score=88.88  Aligned_cols=67  Identities=18%  Similarity=0.395  Sum_probs=59.4

Q ss_pred             ccCccccccCCCceeCCcccccccchhHHHhhhh-hhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         33 INWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKR-DECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        33 ~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~-~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +..+...|+++++|.|++|++.|.....|..|++ .|.+...+|.|..|++.|.....|..|++++|+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            4567788999999999999999999999999997 676653459999999999999999999998874

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.75  E-value=1.6e-18  Score=84.70  Aligned_cols=57  Identities=35%  Similarity=0.743  Sum_probs=50.6

Q ss_pred             CCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         42 NSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        42 ~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |+++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..|+++||+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCC-EECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCC-cCCCCCcchhCCHHHHHHHHHHhcC
Confidence            46899999999999999999999999999777 9999999999999999999999985

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.75  E-value=4.6e-19  Score=93.86  Aligned_cols=81  Identities=19%  Similarity=0.378  Sum_probs=73.0

Q ss_pred             CCCC--CCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHH
Q psy12010         18 YSFN--WPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMA   95 (99)
Q Consensus        18 ~~~~--~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~   95 (99)
                      +.|.  .|...|.....+..|...|.++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++
T Consensus         5 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~   83 (90)
T 1a1h_A            5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTK   83 (90)
T ss_dssp             EECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHHHHHHHG
T ss_pred             eECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCC-ccCCCCCchhCCHHHHHHHHH
Confidence            4454  3677778877888888899999999999999999999999999999999777 999999999999999999999


Q ss_pred             hhcC
Q psy12010         96 IKHS   99 (99)
Q Consensus        96 ~~~~   99 (99)
                      +|+|
T Consensus        84 ~H~~   87 (90)
T 1a1h_A           84 IHLR   87 (90)
T ss_dssp             GGGC
T ss_pred             Hhcc
Confidence            9986

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=5.2e-19  Score=95.56  Aligned_cols=71  Identities=21%  Similarity=0.248  Sum_probs=63.7

Q ss_pred             CCcccccCccccccCCCceeCCccccccc-chhHHHhhhhhhhC-CCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         28 NESDFINWPTVRQYNSGMFPCDVCGKKYK-YKWGLSRHKRDECG-QEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        28 ~~~~~~~~~~~~~~~~k~~~C~~c~~~f~-~~~~l~~h~~~h~~-~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ........+...|.++++|.|.+|++.|. ....|..|+++|.+ .++ |.|.+|++.|.....|.+|+++||+
T Consensus         7 ~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~-~~C~~C~k~F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A            7 GPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDA-LKCQHCRKQFKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             CCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHH-HSCSSSCCCCSCHHHHHHHHHHHSC
T ss_pred             CCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCC-EECCCCCCccCCHHHHHHHHHHHcC
Confidence            34445667778899999999999999999 99999999999998 666 9999999999999999999999885

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=2.9e-18  Score=87.19  Aligned_cols=60  Identities=25%  Similarity=0.493  Sum_probs=56.2

Q ss_pred             cccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         39 RQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        39 ~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .+.++++|.|..|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..|+++|++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCS-EECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-EeCCCCCCccCCHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999776 9999999999999999999999875

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=2.4e-18  Score=86.46  Aligned_cols=61  Identities=23%  Similarity=0.485  Sum_probs=55.7

Q ss_pred             ccccCCCceeCCcccccccchhHHHhhhhh-h-hCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         38 VRQYNSGMFPCDVCGKKYKYKWGLSRHKRD-E-CGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        38 ~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~-h-~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ..|+++++|.|+.|++.|.....|..|++. | .+.++ |.|..|++.|...+.|..|++++||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~-~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCC-EECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcC-eECCCCCCccCCHHHHHHHHHHHcC
Confidence            467889999999999999999999999998 6 46555 9999999999999999999999986

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.73  E-value=6.9e-18  Score=86.62  Aligned_cols=61  Identities=31%  Similarity=0.618  Sum_probs=56.2

Q ss_pred             ccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         38 VRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        38 ~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ..+.++++|+|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|.+|+++|+|
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCS-EECTTTCCEESCHHHHHHHHHHHCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCC-EECCCCCchhCCHHHHHHHHHhcCC
Confidence            345678999999999999999999999999999777 9999999999999999999999985

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=3.7e-18  Score=91.20  Aligned_cols=83  Identities=22%  Similarity=0.406  Sum_probs=73.9

Q ss_pred             CCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCC--CCcccCCCCCccccChhHHHHH
Q psy12010         16 PEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQ--EPKYQCPQCPYRASQKATLKTH   93 (99)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~--~~~~~c~~C~~~f~~~~~l~~H   93 (99)
                      ..+.|..|...|.....+..|...|.++++|.|..|++.|.....|..|++.|.+.  ++ |.|.+|++.|.....|..|
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-~~C~~C~~~f~~~~~L~~H   84 (95)
T 2yt9_A            6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP-YICQSCGKGFSRPDHLNGH   84 (95)
T ss_dssp             SCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSS-BCCSSSCCCBSSHHHHHHH
T ss_pred             CCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCc-eECCCccchhCCHHHHHHH
Confidence            34578888888888888888899999999999999999999999999999999986  55 9999999999999999999


Q ss_pred             HH-hhcC
Q psy12010         94 MA-IKHS   99 (99)
Q Consensus        94 ~~-~~~~   99 (99)
                      ++ +|.+
T Consensus        85 ~~~~H~~   91 (95)
T 2yt9_A           85 IKQVHSG   91 (95)
T ss_dssp             HHHTSCC
T ss_pred             HHHhcCC
Confidence            86 5543

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=1e-17  Score=86.59  Aligned_cols=62  Identities=29%  Similarity=0.629  Sum_probs=56.9

Q ss_pred             cccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         37 TVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        37 ~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ...+.++++|.|++|++.|.....|..|++.|.+.++ |.|.+|++.|.....|.+|+++|++
T Consensus        10 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~   71 (77)
T 2cot_A           10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRVHTG   71 (77)
T ss_dssp             CSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCS-EECSSSCCEESSHHHHHHHGGGSCC
T ss_pred             cCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcC-eeCCCCCCccCCHHHHHHHHHHhCC
Confidence            3455678999999999999999999999999999776 9999999999999999999999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.73  E-value=2.4e-18  Score=97.78  Aligned_cols=66  Identities=17%  Similarity=0.190  Sum_probs=60.9

Q ss_pred             ccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         33 INWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        33 ~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ...+..++.|+++|+|++|++.|.....|..|+++|++.++ |.|.+|++.|.....|..|+++|+|
T Consensus        10 ~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   75 (133)
T 2lt7_A           10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK-YPCRYCEKVFPLAEYRTKHEIHHTG   75 (133)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSC-EECSSSSCEESSHHHHHHHHHHHHT
T ss_pred             HhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCC-eeCCccCeecccccchhhhccccCC
Confidence            45566778899999999999999999999999999999777 9999999999999999999999875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.72  E-value=5.8e-18  Score=91.16  Aligned_cols=82  Identities=20%  Similarity=0.331  Sum_probs=74.1

Q ss_pred             CCCCCC--CccccCCcccccCccccccCCCceeCC--cccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHH
Q psy12010         17 EYSFNW--PEVHLNESDFINWPTVRQYNSGMFPCD--VCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKT   92 (99)
Q Consensus        17 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~C~--~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~   92 (99)
                      .+.|.+  |...|.....+..|...|.++++|.|.  .|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..
T Consensus        15 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~   93 (100)
T 2ebt_A           15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLAL   93 (100)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCS-CBCSSSCCBCSSHHHHHH
T ss_pred             ceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCC-eECCCCcCccCCHHHHHH
Confidence            346775  778888888888888999999999996  699999999999999999999777 999999999999999999


Q ss_pred             HHHhhcC
Q psy12010         93 HMAIKHS   99 (99)
Q Consensus        93 H~~~~~~   99 (99)
                      |+++|++
T Consensus        94 H~~~H~~  100 (100)
T 2ebt_A           94 HMKRHQN  100 (100)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhCC
Confidence            9999986

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.72  E-value=1.9e-17  Score=87.41  Aligned_cols=62  Identities=21%  Similarity=0.345  Sum_probs=55.2

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHH-hhc
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMA-IKH   98 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~-~~~   98 (99)
                      ....+...++|.|++|++.|.....|..|+++|+++++ |.|.+|++.|.....|.+|++ +|.
T Consensus        19 ~~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           19 VLGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             CCSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSS-EECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCc-cCCCCCCCEeCCHHHHHHhCcccCc
Confidence            34456678899999999999999999999999999777 999999999999999999975 454

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=5.1e-18  Score=91.49  Aligned_cols=69  Identities=25%  Similarity=0.345  Sum_probs=60.0

Q ss_pred             CcccccCccccccCCCceeCCcccccc-cchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHH-HHhhcC
Q psy12010         29 ESDFINWPTVRQYNSGMFPCDVCGKKY-KYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTH-MAIKHS   99 (99)
Q Consensus        29 ~~~~~~~~~~~~~~~k~~~C~~c~~~f-~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H-~~~~~~   99 (99)
                      ....+..+...+.++++|.|+.|++.| .....|..|+++| +.++ |.|.+|++.|.....|..| +++|++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~-~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           18 AGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEM-FTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             TTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCC-CCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             CchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCC-eECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            333445566677889999999999999 9999999999999 8666 9999999999999999999 888864

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=4.6e-17  Score=85.38  Aligned_cols=67  Identities=15%  Similarity=0.287  Sum_probs=59.9

Q ss_pred             ccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCC---CcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         33 INWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQE---PKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        33 ~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~---~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +..+...|+++++|.|.+|++.|.....|..|++.+.+..   .+|.|..|++.|.....|..|+++|++
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~   72 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAG   72 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccC
Confidence            4557778999999999999999999999999999877752   459999999999999999999999875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.70  E-value=9e-18  Score=88.65  Aligned_cols=81  Identities=23%  Similarity=0.420  Sum_probs=72.9

Q ss_pred             CCCCCC--CccccCCcccccCccccccCCCceeCC--cccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHH
Q psy12010         17 EYSFNW--PEVHLNESDFINWPTVRQYNSGMFPCD--VCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKT   92 (99)
Q Consensus        17 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~C~--~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~   92 (99)
                      .+.|..  |+..|.....+..|...|.++++|.|+  .|++.|.....|..|++.|.+.++ |.|..|++.|.....|..
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~   83 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLAL   83 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCC-EECSSSSCEESSHHHHHH
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCC-ccCCCCCcccCCHHHHHH
Confidence            345666  777888888888888899999999997  699999999999999999999777 999999999999999999


Q ss_pred             HHHhhc
Q psy12010         93 HMAIKH   98 (99)
Q Consensus        93 H~~~~~   98 (99)
                      |+++|.
T Consensus        84 H~~~H~   89 (89)
T 2wbs_A           84 HMKRHF   89 (89)
T ss_dssp             HGGGGC
T ss_pred             HHHhhC
Confidence            999874

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=2.4e-17  Score=85.29  Aligned_cols=58  Identities=22%  Similarity=0.470  Sum_probs=53.3

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhhhhhC---CCCcccCCCCCccccChhHHHHHHHhhc
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECG---QEPKYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~---~~~~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      |+++++|.|.+|++.|.....|..|++.|.+   .++ |.|..|++.|.....|..|++.+|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~-~~C~~C~k~f~~~~~L~~H~~~~H   62 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSH   62 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCC-EECTTTCCEESSHHHHHHHHHHTS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcc-cCCCCCCchhCCHHHHHHHHHHhC
Confidence            6789999999999999999999999999986   455 999999999999999999996654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=7.9e-18  Score=92.22  Aligned_cols=80  Identities=23%  Similarity=0.392  Sum_probs=72.6

Q ss_pred             CCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHh
Q psy12010         17 EYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI   96 (99)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~   96 (99)
                      .+.| .|...|.....+..|...|.++++|.|.+|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++
T Consensus        10 ~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           10 LYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCC-EECSSSCCEESCHHHHHHHHHH
T ss_pred             CEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCC-eeCCCCcchhcCHHHHHHHHHH
Confidence            3556 6777888888888888899999999999999999999999999999999777 9999999999999999999998


Q ss_pred             hc
Q psy12010         97 KH   98 (99)
Q Consensus        97 ~~   98 (99)
                      |+
T Consensus        88 ~~   89 (110)
T 2csh_A           88 CT   89 (110)
T ss_dssp             HH
T ss_pred             cc
Confidence            75

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=5e-17  Score=83.05  Aligned_cols=65  Identities=26%  Similarity=0.456  Sum_probs=58.0

Q ss_pred             ccCccccccCCCceeCC--cccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhc
Q psy12010         33 INWPTVRQYNSGMFPCD--VCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        33 ~~~~~~~~~~~k~~~C~--~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      .......+.++++|.|+  .|++.|.....|..|++.|.+.++ |.|..|++.|.....|.+|+++|+
T Consensus         7 ~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             -CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCC-eECCCCCchhCCHHHHHHHHHhcC
Confidence            34455667889999997  699999999999999999999777 999999999999999999999875

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.69  E-value=9.4e-18  Score=99.70  Aligned_cols=81  Identities=21%  Similarity=0.456  Sum_probs=64.2

Q ss_pred             CCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhh
Q psy12010         18 YSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      +.|..|+..|.....+..|...|.++++|.|+.|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|
T Consensus       106 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~-~~C~~C~~~f~~~~~L~~H~~~H  184 (190)
T 2i13_A          106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVHQRTH  184 (190)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHHHHHHHTTC
T ss_pred             CcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC-eECCCCCCccCCHHHHHHHHHhc
Confidence            45666777777777777777778888888888888888888888888888888666 88888888888888888888887


Q ss_pred             cC
Q psy12010         98 HS   99 (99)
Q Consensus        98 ~~   99 (99)
                      +|
T Consensus       185 ~~  186 (190)
T 2i13_A          185 TG  186 (190)
T ss_dssp             --
T ss_pred             CC
Confidence            75

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.68  E-value=6.3e-17  Score=78.94  Aligned_cols=54  Identities=30%  Similarity=0.610  Sum_probs=51.1

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|+.|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCC-EECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCC-ccCCCCCchhcCHHHHHHHHHHhcc
Confidence            68999999999999999999999999777 9999999999999999999999875

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.68  E-value=4e-17  Score=90.26  Aligned_cols=75  Identities=23%  Similarity=0.468  Sum_probs=35.1

Q ss_pred             CccccCCcccccCccccccCCCceeCC--cccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhc
Q psy12010         23 PEVHLNESDFINWPTVRQYNSGMFPCD--VCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~k~~~C~--~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      |+..|.....+..|...|.++++|.|+  .|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|+
T Consensus        14 C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~   90 (119)
T 2jp9_A           14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTHTRTHT   90 (119)
T ss_dssp             SCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCC-ccCCccCchhCCHHHHHHHHHHhc
Confidence            333444444444444444444444544  355555444444445444444333 444444444444444444444443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.5e-16  Score=78.40  Aligned_cols=55  Identities=27%  Similarity=0.593  Sum_probs=50.5

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHH-HhhcC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM-AIKHS   99 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~-~~~~~   99 (99)
                      ++|.|+.|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+ ++|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCS-EECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCC-ccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            589999999999999999999999999776 99999999999999999997 56654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.65  E-value=5.5e-17  Score=89.70  Aligned_cols=79  Identities=24%  Similarity=0.505  Sum_probs=71.3

Q ss_pred             CCCC--CCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccC--CCCCccccChhHHHHH
Q psy12010         18 YSFN--WPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC--PQCPYRASQKATLKTH   93 (99)
Q Consensus        18 ~~~~--~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c--~~C~~~f~~~~~l~~H   93 (99)
                      +.|.  .|+..|.....+..|...|.++++|.|++|++.|.....|..|++.|.+.++ |.|  ..|++.|.....|..|
T Consensus        37 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H  115 (119)
T 2jp9_A           37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRH  115 (119)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCC-EECCSTTCCCEESSHHHHHHH
T ss_pred             ccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHHhcCCCC-eeCCCCCCccccCCHHHHHHH
Confidence            4566  4777778877888888899999999999999999999999999999999777 999  7999999999999999


Q ss_pred             HHhh
Q psy12010         94 MAIK   97 (99)
Q Consensus        94 ~~~~   97 (99)
                      +++|
T Consensus       116 ~~~H  119 (119)
T 2jp9_A          116 HNMH  119 (119)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            9886

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=1.5e-16  Score=88.47  Aligned_cols=80  Identities=23%  Similarity=0.429  Sum_probs=58.1

Q ss_pred             CCCCCCccccCCcccccCcccc---ccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHH
Q psy12010         18 YSFNWPEVHLNESDFINWPTVR---QYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHM   94 (99)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~---~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~   94 (99)
                      +.|..|...|.....+..|...   +.++++|.|++|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+
T Consensus        36 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~  114 (124)
T 2dlq_A           36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHM  114 (124)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCS-EECSSSCCEESSHHHHHHHH
T ss_pred             eECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC-ccCCCccchhCCHHHHHHHH
Confidence            5566666666666666555553   4567778888888888888888888888877665 88888888888888888887


Q ss_pred             Hhhc
Q psy12010         95 AIKH   98 (99)
Q Consensus        95 ~~~~   98 (99)
                      +..|
T Consensus       115 ~~~H  118 (124)
T 2dlq_A          115 IKLH  118 (124)
T ss_dssp             HHTS
T ss_pred             HHHC
Confidence            6433

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.65  E-value=1.1e-16  Score=89.17  Aligned_cols=82  Identities=24%  Similarity=0.460  Sum_probs=71.0

Q ss_pred             CCCCCCCccccCCcccccCccccccCCCceeCCc--ccccccchhHHHhhhhhhhCCCCcccCC--CCCccccChhHHHH
Q psy12010         17 EYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCP--QCPYRASQKATLKT   92 (99)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~--c~~~f~~~~~l~~h~~~h~~~~~~~~c~--~C~~~f~~~~~l~~   92 (99)
                      .+.|..|+..|.....+..|...|.++++|.|..  |++.|.....|..|++.|.+.++ |.|.  .|++.|.+...|..
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~  112 (124)
T 1ubd_C           34 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKS  112 (124)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCC-CCCCSTTCCCCCSSTTTTHH
T ss_pred             CeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCc-eECCCCCCCCccCCHHHHHH
Confidence            4577888888888888888888899999999975  99999999999999999999776 9995  59999999999999


Q ss_pred             HHHhhcC
Q psy12010         93 HMAIKHS   99 (99)
Q Consensus        93 H~~~~~~   99 (99)
                      |+++|++
T Consensus       113 H~~~H~~  119 (124)
T 1ubd_C          113 HILTHAK  119 (124)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHcc
Confidence            9999875

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.64  E-value=5.5e-17  Score=93.58  Aligned_cols=81  Identities=23%  Similarity=0.402  Sum_probs=70.7

Q ss_pred             CCCCCCccccCCcccccCccccccCCCceeCCc--ccccccchhHHHhhhhhhhCCCCcccCCC--CCccccChhHHHHH
Q psy12010         18 YSFNWPEVHLNESDFINWPTVRQYNSGMFPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQ--CPYRASQKATLKTH   93 (99)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~--c~~~f~~~~~l~~h~~~h~~~~~~~~c~~--C~~~f~~~~~l~~H   93 (99)
                      +.|..|...|.....+..|...|.++++|.|..  |++.|.....|..|++.|.+.++ |.|..  |++.|.....|..|
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~-~~C~~~~C~k~f~~~~~L~~H  141 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKH  141 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCS-BCCSSTTCCCCBSSHHHHHHS
T ss_pred             cCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCC-ccCCCCCCCCccCCHHHHHHH
Confidence            567778888888778888888888999999988  99999999999999999988776 99986  99999999999999


Q ss_pred             HHhhcC
Q psy12010         94 MAIKHS   99 (99)
Q Consensus        94 ~~~~~~   99 (99)
                      +++|+|
T Consensus       142 ~~~H~~  147 (155)
T 2rpc_A          142 MHVHTS  147 (155)
T ss_dssp             STTTTS
T ss_pred             HHHhcC
Confidence            998875

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.1e-16  Score=86.03  Aligned_cols=60  Identities=15%  Similarity=0.323  Sum_probs=53.2

Q ss_pred             cccCCCceeCCcccccccchhHHHhhhh-hh---hCCCCcccCCCCCccccChhHHHHH-HHhhcC
Q psy12010         39 RQYNSGMFPCDVCGKKYKYKWGLSRHKR-DE---CGQEPKYQCPQCPYRASQKATLKTH-MAIKHS   99 (99)
Q Consensus        39 ~~~~~k~~~C~~c~~~f~~~~~l~~h~~-~h---~~~~~~~~c~~C~~~f~~~~~l~~H-~~~~~~   99 (99)
                      ..+|+++|.|..|++.|.....|..|++ .|   .+.++ |.|.+|++.|...+.|..| +++|+|
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekp-f~C~~Cgk~F~~~~~L~~H~~r~Htg   76 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS-YVCVECNFLTKRYDALSEHNLKYHPG   76 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCC-EEETTTTEEESSTHHHHTHHHHTSTT
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCC-cCCCCCCcccCCHHHHHHHHHHhcCC
Confidence            3468999999999999999999999998 58   44455 9999999999999999999 788875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.9e-16  Score=87.98  Aligned_cols=83  Identities=17%  Similarity=0.298  Sum_probs=74.3

Q ss_pred             CCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhh---hhCCCCcccCCCCCccccChhHHHH
Q psy12010         16 PEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRD---ECGQEPKYQCPQCPYRASQKATLKT   92 (99)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~---h~~~~~~~~c~~C~~~f~~~~~l~~   92 (99)
                      ..+.|..|...|.....+..|...|.++++|.|+.|++.|.....|..|+..   +.+..+ |.|.+|++.|.....|..
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~-~~C~~C~~~f~~~~~l~~   84 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRL   84 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCC-EECSSSCCEESSHHHHHH
T ss_pred             CCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCC-eECCCCCCccCCHHHHHH
Confidence            4567888888888888888999999999999999999999999999999996   455555 999999999999999999


Q ss_pred             HHHhhcC
Q psy12010         93 HMAIKHS   99 (99)
Q Consensus        93 H~~~~~~   99 (99)
                      |+++|++
T Consensus        85 H~~~h~~   91 (124)
T 2dlq_A           85 HMVSHTG   91 (124)
T ss_dssp             HHHHHSS
T ss_pred             HHHHcCC
Confidence            9999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.2e-16  Score=91.98  Aligned_cols=81  Identities=16%  Similarity=0.381  Sum_probs=61.7

Q ss_pred             CCCCC--CccccCCcccccCccccccCCCceeCCc--ccccccchhHHHhhh-hhhhCCCCcccCCC--CCccccChhHH
Q psy12010         18 YSFNW--PEVHLNESDFINWPTVRQYNSGMFPCDV--CGKKYKYKWGLSRHK-RDECGQEPKYQCPQ--CPYRASQKATL   90 (99)
Q Consensus        18 ~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~C~~--c~~~f~~~~~l~~h~-~~h~~~~~~~~c~~--C~~~f~~~~~l   90 (99)
                      +.|.+  |+..|.....+..|...|.++++|.|+.  |++.|.....|..|+ +.|.+.++ |.|..  |++.|.....|
T Consensus        68 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~-~~C~~~~C~~~f~~~~~L  146 (155)
T 2gli_A           68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP-YVCKLPGCTKRYTDPSSL  146 (155)
T ss_dssp             CCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCC-EECCSTTTCCEESSHHHH
T ss_pred             ccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCC-eeCCCCCCccccCCHHHH
Confidence            45553  6666666667777777777888888887  888888888888887 67777665 88877  88888888888


Q ss_pred             HHHHHhhcC
Q psy12010         91 KTHMAIKHS   99 (99)
Q Consensus        91 ~~H~~~~~~   99 (99)
                      ..|+++|||
T Consensus       147 ~~H~~~hhg  155 (155)
T 2gli_A          147 RKHVKTVHG  155 (155)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHhhcC
Confidence            888888776

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.62  E-value=1.6e-16  Score=94.36  Aligned_cols=79  Identities=22%  Similarity=0.415  Sum_probs=47.0

Q ss_pred             CCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhc
Q psy12010         19 SFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      .|..|+..|.....+..|...|.++++|.|+.|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|+
T Consensus        79 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~  157 (190)
T 2i13_A           79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQRTHT  157 (190)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHHHH
T ss_pred             cCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCC-eECCCCCcccCCHHHHHHHHHhcC
Confidence            3444555555555555555555556666666666666666666666666666554 666666666666666666666654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.62  E-value=6.3e-16  Score=81.63  Aligned_cols=54  Identities=26%  Similarity=0.604  Sum_probs=28.1

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhc
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      ++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~h~   55 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQH   55 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHHHHHHHHHHT
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCC-ccCCCCCCccCCHHHHHHHHHHhC
Confidence            445555555555555555555555555443 555555555555555555555443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.61  E-value=1.7e-16  Score=82.85  Aligned_cols=74  Identities=18%  Similarity=0.370  Sum_probs=67.8

Q ss_pred             CCCccccCCcccccCccccccCCCceeCCc--ccccccchhHHHhhhhhhhCCCCcccCCC---CCccccChhHHHHHHH
Q psy12010         21 NWPEVHLNESDFINWPTVRQYNSGMFPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQ---CPYRASQKATLKTHMA   95 (99)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~--c~~~f~~~~~l~~h~~~h~~~~~~~~c~~---C~~~f~~~~~l~~H~~   95 (99)
                      ..|+..+.....+..+...|.++++|.|+.  |++.|.....|..|++.|.+    |.|..   |++.|.....|..|++
T Consensus         7 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~----~~C~~~~~C~~~f~~~~~l~~H~~   82 (85)
T 2j7j_A            7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDSCSFVGKTWTLYLKHVA   82 (85)
T ss_dssp             TTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS----EECCSCSSCCCEESSHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC----CCCCCCCCCCCccCCHHHHHHHHH
Confidence            557777888788888889999999999988  99999999999999999988    99999   9999999999999999


Q ss_pred             hhc
Q psy12010         96 IKH   98 (99)
Q Consensus        96 ~~~   98 (99)
                      +||
T Consensus        83 ~hh   85 (85)
T 2j7j_A           83 ECH   85 (85)
T ss_dssp             HCC
T ss_pred             hcC
Confidence            886

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.61  E-value=4.7e-16  Score=87.29  Aligned_cols=65  Identities=18%  Similarity=0.365  Sum_probs=57.3

Q ss_pred             ccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         31 DFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        31 ~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ..+..+. .|+++++|.|+.|++.|.....|..|+++|  .++ |.|..|++.|...+.|.+|+++|||
T Consensus        61 ~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~-~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           61 SYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHT-KVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             HHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCC-CBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             HHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCC-CCCCCCCcccCCHHHHHHHHHHHCC
Confidence            3344444 577899999999999999999999999998  455 9999999999999999999999986

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.1e-16  Score=88.26  Aligned_cols=82  Identities=13%  Similarity=0.111  Sum_probs=69.3

Q ss_pred             CCCCCCCccccCCcccccCcccc--ccCCCcee-CCcccccc--cchhHHHhhhhhhhCCCCcccCCCCCccccChhHHH
Q psy12010         17 EYSFNWPEVHLNESDFINWPTVR--QYNSGMFP-CDVCGKKY--KYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLK   91 (99)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~-C~~c~~~f--~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~   91 (99)
                      .+.|..|...|.....+..|...  +.+.+++. |..|++.|  .....|..|+++|.++++ |.|.+|++.|.....|.
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~   97 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV-LKCMYCGHSFESLQDLS   97 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSS-CBCSSSCCBCSSHHHHH
T ss_pred             CEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcc-eECCCCCCccCCHHHHH
Confidence            36777888888887777777776  66666654 99999998  888999999999998777 99999999999999999


Q ss_pred             HHHHhhcC
Q psy12010         92 THMAIKHS   99 (99)
Q Consensus        92 ~H~~~~~~   99 (99)
                      .|+++|+.
T Consensus        98 ~H~~~hh~  105 (115)
T 2dmi_A           98 VHMIKTKH  105 (115)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHhCC
Confidence            99998763

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.60  E-value=4.6e-16  Score=86.63  Aligned_cols=80  Identities=23%  Similarity=0.376  Sum_probs=70.0

Q ss_pred             CCCC--CCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC--CCccccChhHHHHH
Q psy12010         18 YSFN--WPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ--CPYRASQKATLKTH   93 (99)
Q Consensus        18 ~~~~--~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~--C~~~f~~~~~l~~H   93 (99)
                      +.|.  .|+..|.....+..|...| +.++|.|..|++.|.....|..|++.|.+.++ |.|..  |++.|.....|..|
T Consensus         6 ~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H   83 (124)
T 1ubd_C            6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTH   83 (124)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCC-EECCSTTCCCEESCHHHHHHH
T ss_pred             ccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-eeCCCCCCcCccCCHHHHHHH
Confidence            3455  5667777777777788888 88999999999999999999999999999777 99975  99999999999999


Q ss_pred             HHhhcC
Q psy12010         94 MAIKHS   99 (99)
Q Consensus        94 ~~~~~~   99 (99)
                      +++|++
T Consensus        84 ~~~h~~   89 (124)
T 1ubd_C           84 VRIHTG   89 (124)
T ss_dssp             HHHHHC
T ss_pred             HHHhCC
Confidence            999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.60  E-value=1.1e-16  Score=87.37  Aligned_cols=79  Identities=11%  Similarity=0.147  Sum_probs=69.1

Q ss_pred             CCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHH
Q psy12010         16 PEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMA   95 (99)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~   95 (99)
                      ..+.|..|...|.....+..|...|  .++|.|.+|++.|.....|..|+. |.+.++ |.|.+|++.|.....|..|++
T Consensus        15 ~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~-~~C~~C~~~f~~~~~L~~H~~   90 (107)
T 1wjp_A           15 EVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKK-LTCLECMRTFKSSFSIWRHQV   90 (107)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGG-GEEGGGTEECSSHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCC-ccCccccchhCCHHHHHHHHH
Confidence            3467888888888888888888877  478999999999999999999996 888776 999999999999999999997


Q ss_pred             -hhc
Q psy12010         96 -IKH   98 (99)
Q Consensus        96 -~~~   98 (99)
                       +|.
T Consensus        91 ~~H~   94 (107)
T 1wjp_A           91 EVHN   94 (107)
T ss_dssp             HTSC
T ss_pred             HHcC
Confidence             664

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.57  E-value=3.8e-15  Score=79.50  Aligned_cols=59  Identities=36%  Similarity=0.714  Sum_probs=55.0

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +.++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~   61 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSD   61 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCS-EECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCC-EeCCCCCCccCCHHHHHHHHHHhCC
Confidence            4678999999999999999999999999998776 9999999999999999999999864

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=3.9e-15  Score=81.37  Aligned_cols=60  Identities=30%  Similarity=0.565  Sum_probs=55.8

Q ss_pred             ccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         38 VRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        38 ~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ..|+++++|.| .|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~   62 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIHTG   62 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCS-EECTTTSCEESSSHHHHHHHTTTCC
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcC-ccCCCCCcccCCHHHHHHHHHHcCC
Confidence            35788999999 999999999999999999999776 9999999999999999999999874

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.56  E-value=5.6e-15  Score=78.70  Aligned_cols=58  Identities=31%  Similarity=0.718  Sum_probs=54.4

Q ss_pred             cCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         41 YNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        41 ~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .++++|.|.+|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~   60 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDG   60 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCS-EECSSSCCEESCHHHHHHHHHHHCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCC-CcCCCCCCccCCHHHHHHHHHHhcC
Confidence            578999999999999999999999999998776 9999999999999999999999874

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=3.3e-15  Score=74.99  Aligned_cols=56  Identities=23%  Similarity=0.494  Sum_probs=50.9

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC-CCCccccChhHHHHHHHhhc
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP-QCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~-~C~~~f~~~~~l~~H~~~~~   98 (99)
                      .-+.++|.|..|++.|. ...|..|+++ .+.++ |.|. .|++.|..++.|..|+++|-
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p-~~C~~~C~k~f~~~~~L~~H~~~hc   61 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLP-VACPNQCGVGTVAREDLPGHLKDSC   61 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSE-EECTTCCSCCEEETTTHHHHHHTTS
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcC-ccCCcccCcccccHHHHHHHHHhhc
Confidence            45778999999999999 9999999999 77665 9999 99999999999999999874

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=73.90  Aligned_cols=60  Identities=25%  Similarity=0.506  Sum_probs=53.3

Q ss_pred             cccccCCCceeCCc--ccccccchhHHHhhhhhhhCCCCcccCCC--CCccccChhHHHHHHHhh
Q psy12010         37 TVRQYNSGMFPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQ--CPYRASQKATLKTHMAIK   97 (99)
Q Consensus        37 ~~~~~~~k~~~C~~--c~~~f~~~~~l~~h~~~h~~~~~~~~c~~--C~~~f~~~~~l~~H~~~~   97 (99)
                      .......++|.|..  |++.|.....|..|++.|.+.++ |.|..  |++.|.....|.+|+++|
T Consensus         9 ~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A            9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCS-EECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCC-ccCCCCCCCcccCCHHHHHhHhhcC
Confidence            33455778999998  99999999999999999999776 99965  999999999999999875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=1.2e-14  Score=75.00  Aligned_cols=61  Identities=18%  Similarity=0.390  Sum_probs=31.0

Q ss_pred             CccccCCcccccCccc-cccCCCceeCCc--ccccccchhHHHhhhhhhhCCCCcccCCCCCccc
Q psy12010         23 PEVHLNESDFINWPTV-RQYNSGMFPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA   84 (99)
Q Consensus        23 ~~~~~~~~~~~~~~~~-~~~~~k~~~C~~--c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f   84 (99)
                      |...|.....+..|.. .|.++++|.|+.  |++.|.....|..|+++|++.++ |.|.+|++.|
T Consensus        15 C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~k~F   78 (79)
T 2dlk_A           15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEFSGPSS   78 (79)
T ss_dssp             TCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCC-CSCCSSSCCC
T ss_pred             CcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCC-eeCCCCCCCC
Confidence            4444444444444444 455555555555  55555555555555555555443 5555555544

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.54  E-value=4.4e-15  Score=85.51  Aligned_cols=83  Identities=19%  Similarity=0.265  Sum_probs=71.5

Q ss_pred             CCCCCCCCccccCCcccccCcccc-ccCCCc--------eeCCcccccccchhHHHhhhhhhhCCCCcccCCC--CCccc
Q psy12010         16 PEYSFNWPEVHLNESDFINWPTVR-QYNSGM--------FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ--CPYRA   84 (99)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~--------~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~--C~~~f   84 (99)
                      ..+.|..|...|.....+..|... |.+.++        |.|..|++.|.....|..|++.|.+.++ |.|..  |++.|
T Consensus        24 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f  102 (155)
T 2rpc_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIF  102 (155)
T ss_dssp             CSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCS-EECSCTTTCCEE
T ss_pred             cccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCc-ccCCcCCCCCcc
Confidence            345677788888887777777776 766654        8999999999999999999999999777 99998  99999


Q ss_pred             cChhHHHHHHHhhcC
Q psy12010         85 SQKATLKTHMAIKHS   99 (99)
Q Consensus        85 ~~~~~l~~H~~~~~~   99 (99)
                      .....|..|+++|++
T Consensus       103 ~~~~~L~~H~~~h~~  117 (155)
T 2rpc_A          103 ARSENLKIHKRTHTG  117 (155)
T ss_dssp             SCHHHHHHHHTTTCS
T ss_pred             CCHHHHHHHHHhhCC
Confidence            999999999999875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=2.8e-15  Score=77.45  Aligned_cols=58  Identities=31%  Similarity=0.661  Sum_probs=53.3

Q ss_pred             cCCCceeCCc--ccccccchhHHHhhhh-hhhCCCCcccCCC--CCccccChhHHHHHHHhhcC
Q psy12010         41 YNSGMFPCDV--CGKKYKYKWGLSRHKR-DECGQEPKYQCPQ--CPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        41 ~~~k~~~C~~--c~~~f~~~~~l~~h~~-~h~~~~~~~~c~~--C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +++++|.|..  |++.|.....|..|++ .|.+.++ |.|..  |++.|.....|..|+++|++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~-~~C~~~~C~k~f~~~~~L~~H~~~H~~   65 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMKLHSD   65 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCC-EECSCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCC-eECCCCCCcCccCCHHHHHHHHHHhCC
Confidence            4678999987  9999999999999999 7988776 99999  99999999999999999874

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.53  E-value=3.3e-15  Score=88.64  Aligned_cols=77  Identities=23%  Similarity=0.412  Sum_probs=45.5

Q ss_pred             CCccccCCcccccCcc-ccc-cCCCceeC--CcccccccchhHHHhhhhhhhCCCCcccCCC--CCccccChhHHHHHHH
Q psy12010         22 WPEVHLNESDFINWPT-VRQ-YNSGMFPC--DVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ--CPYRASQKATLKTHMA   95 (99)
Q Consensus        22 ~~~~~~~~~~~~~~~~-~~~-~~~k~~~C--~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~--C~~~f~~~~~l~~H~~   95 (99)
                      .|+..|.....+..|. ..| .+.++|.|  +.|++.|.....|..|+++|.+.++ |.|..  |++.|.....|..|++
T Consensus        79 ~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~~C~k~F~~~~~L~~H~~  157 (190)
T 1tf6_A           79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEK  157 (190)
T ss_dssp             SCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCS-SBCCSSSCCCBCSSHHHHHHHHT
T ss_pred             CCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCC-ccCCCCCCCchhcCHHHHHHHHH
Confidence            3444444444444444 444 34556666  6666666666666666666666554 66655  6666666666666666


Q ss_pred             hhcC
Q psy12010         96 IKHS   99 (99)
Q Consensus        96 ~~~~   99 (99)
                      +|+|
T Consensus       158 ~H~~  161 (190)
T 1tf6_A          158 VHAG  161 (190)
T ss_dssp             SSCS
T ss_pred             HhCC
Confidence            6654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.53  E-value=3e-17  Score=86.79  Aligned_cols=79  Identities=18%  Similarity=0.222  Sum_probs=71.5

Q ss_pred             CCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhh
Q psy12010         18 YSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      +.|..|+..|.....+..|...|.++++|.|+.|++.|.....|..|++.|.+ .+ |.|..|++.|.....|..|++..
T Consensus         4 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~-~~c~~C~~~f~~~~~L~~H~~~~   81 (88)
T 1llm_C            4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LP-ILEDKVEELLSKNYHLENEVARL   81 (88)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-Cc-chHHHHHHHHHHHhhhHHHHHHH
Confidence            46777888888888888889999999999999999999999999999999986 55 99999999999999999999876


Q ss_pred             c
Q psy12010         98 H   98 (99)
Q Consensus        98 ~   98 (99)
                      |
T Consensus        82 h   82 (88)
T 1llm_C           82 K   82 (88)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.52  E-value=4.2e-15  Score=85.50  Aligned_cols=79  Identities=19%  Similarity=0.323  Sum_probs=67.5

Q ss_pred             CCCCccccCCcccccCccccccCCCceeCCc--ccccccchhHHHhhhhhhhCCCCcccCCC--CCccccChhHHHHHH-
Q psy12010         20 FNWPEVHLNESDFINWPTVRQYNSGMFPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQ--CPYRASQKATLKTHM-   94 (99)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~--c~~~f~~~~~l~~h~~~h~~~~~~~~c~~--C~~~f~~~~~l~~H~-   94 (99)
                      |..|...|.....+..|...|.++++|.|..  |++.|.....|..|++.|.+.++ |.|..  |++.|.+...|..|+ 
T Consensus        42 C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~  120 (155)
T 2gli_A           42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQN  120 (155)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCC-EECCSTTCCCEESSSSTTHHHHH
T ss_pred             ccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCC-eeCCCCCCCCccCCHHHHHHHHH
Confidence            3334466777777888888899999999985  99999999999999999998776 99998  999999999999998 


Q ss_pred             HhhcC
Q psy12010         95 AIKHS   99 (99)
Q Consensus        95 ~~~~~   99 (99)
                      ++|++
T Consensus       121 ~~H~~  125 (155)
T 2gli_A          121 RTHSN  125 (155)
T ss_dssp             HTTCS
T ss_pred             HhcCC
Confidence            67754

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.52  E-value=4.1e-15  Score=88.27  Aligned_cols=80  Identities=18%  Similarity=0.348  Sum_probs=72.4

Q ss_pred             CCCCC--CCCccccCCcccccCccccccCCCceeCCc--ccccccchhHHHhhhhhhhCCCCcccCCC---CCccccChh
Q psy12010         16 PEYSF--NWPEVHLNESDFINWPTVRQYNSGMFPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCPQ---CPYRASQKA   88 (99)
Q Consensus        16 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~--c~~~f~~~~~l~~h~~~h~~~~~~~~c~~---C~~~f~~~~   88 (99)
                      ..+.|  ..|+..|.....+..|...|+++++|.|+.  |++.|.....|..|+++|.+    |.|..   |++.|....
T Consensus       103 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~----~~C~~~~~C~~~f~~~~  178 (190)
T 1tf6_A          103 CVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDSCSFVGKTWT  178 (190)
T ss_dssp             SCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS----CCCCSTTTCCCCCSCHH
T ss_pred             ceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC----CcCCCCCcCCCccccHH
Confidence            34667  678888888888999999999999999988  99999999999999999987    88988   999999999


Q ss_pred             HHHHHHHhhcC
Q psy12010         89 TLKTHMAIKHS   99 (99)
Q Consensus        89 ~l~~H~~~~~~   99 (99)
                      .|..|+++|+|
T Consensus       179 ~l~~H~~~h~~  189 (190)
T 1tf6_A          179 LYLKHVAECHQ  189 (190)
T ss_dssp             HHHHHHTTCC-
T ss_pred             HHHHHHHhhcC
Confidence            99999999986

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.52  E-value=1.9e-14  Score=75.80  Aligned_cols=57  Identities=28%  Similarity=0.582  Sum_probs=51.7

Q ss_pred             CCCceeCC--cccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         42 NSGMFPCD--VCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        42 ~~k~~~C~--~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ++++|.|.  .|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~   59 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTG   59 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCC-ccCCCCCcccCCHHHHHHHHHHcCC
Confidence            46899998  699999999999999999999777 9999999999999999999998864

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.52  E-value=4.7e-14  Score=76.49  Aligned_cols=58  Identities=24%  Similarity=0.574  Sum_probs=54.0

Q ss_pred             cCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         41 YNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        41 ~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|++
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~   70 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYIHSK   70 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCC-CBCSSSCCBCSCHHHHHHHGGGSCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCC-cCCCCccchhCCHHHHHHHHHHhCC
Confidence            467899999999999999999999999999776 9999999999999999999999874

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.51  E-value=1.9e-14  Score=69.56  Aligned_cols=49  Identities=18%  Similarity=0.297  Sum_probs=44.1

Q ss_pred             ccccCCCceeCCcccccccchhHHHhhhh-hhhCCCCcccCCCCCccccCh
Q psy12010         38 VRQYNSGMFPCDVCGKKYKYKWGLSRHKR-DECGQEPKYQCPQCPYRASQK   87 (99)
Q Consensus        38 ~~~~~~k~~~C~~c~~~f~~~~~l~~h~~-~h~~~~~~~~c~~C~~~f~~~   87 (99)
                      ..+.++++|.|++|++.|.....|..|++ +|.+.++ |.|.+|++.|.++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~-~~C~~C~k~F~~~   54 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC-CCSSSSCCSSCCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCC-ccCCCCCCCCCCC
Confidence            45678899999999999999999999997 8998776 9999999999863

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=4.2e-15  Score=81.81  Aligned_cols=69  Identities=14%  Similarity=0.130  Sum_probs=59.8

Q ss_pred             ccccCccccccCCCceeCCcccccccchhHHHhhhhh--hhCCCCcccCCCCCccc--cChhHHHHHHHhhcC
Q psy12010         31 DFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRD--ECGQEPKYQCPQCPYRA--SQKATLKTHMAIKHS   99 (99)
Q Consensus        31 ~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~--h~~~~~~~~c~~C~~~f--~~~~~l~~H~~~~~~   99 (99)
                      ..+..+...|+++++|.|+.|++.|.....|..|++.  |.+.++.+.|..|++.|  .....|..|+++|++
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~   77 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA   77 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCC
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCC
Confidence            3566777889999999999999999999999999998  76666645699999999  899999999988764

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.50  E-value=3.1e-14  Score=73.73  Aligned_cols=54  Identities=35%  Similarity=0.643  Sum_probs=50.9

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~   54 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTG   54 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCC-EECSSSCCEESSHHHHHHHHHHHHT
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCC-eeCCcCChhhCCHHHHHHHHHHhcC
Confidence            58999999999999999999999999777 9999999999999999999998864

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.48  E-value=5.1e-14  Score=73.31  Aligned_cols=54  Identities=35%  Similarity=0.690  Sum_probs=50.8

Q ss_pred             ceeC--CcccccccchhHHHhhhhhhhCCCCcccCCC--CCccccChhHHHHHHHhhcC
Q psy12010         45 MFPC--DVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ--CPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        45 ~~~C--~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~--C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|  +.|++.|.....|..|++.|.+.++ |.|..  |++.|.....|..|+++|++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCC-EECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCC-eeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            6899  9999999999999999999999777 99988  99999999999999999875

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=4.4e-14  Score=65.93  Aligned_cols=45  Identities=13%  Similarity=0.209  Sum_probs=41.1

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|++.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKS-SGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTS-SCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCC-CCCCCC
Confidence            456788999999999999999999999999999999776 999887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=5.4e-14  Score=65.54  Aligned_cols=45  Identities=20%  Similarity=0.296  Sum_probs=41.1

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|.+.++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCT-TSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            456778999999999999999999999999999999777 999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=6.3e-14  Score=65.40  Aligned_cols=45  Identities=20%  Similarity=0.338  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+.+.|+++++|+|+.|++.|.....|..|+++|.+.++ |.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCC-CCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            356678999999999999999999999999999999777 999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.47  E-value=6.1e-14  Score=65.45  Aligned_cols=45  Identities=20%  Similarity=0.323  Sum_probs=41.1

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|+|++|++.|.....|..|+++|++.++ |+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSS-CSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            456788999999999999999999999999999999777 999887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=7.1e-14  Score=65.17  Aligned_cols=45  Identities=18%  Similarity=0.290  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|++.++ |+|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSC-CSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            356678999999999999999999999999999999777 999887

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=5.6e-14  Score=64.93  Aligned_cols=44  Identities=18%  Similarity=0.270  Sum_probs=40.0

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      +...|+++++|.|+.|++.|.....|..|+++|++.++ |.|.+|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCS-CSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            35678899999999999999999999999999999776 999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=7e-14  Score=65.20  Aligned_cols=45  Identities=18%  Similarity=0.321  Sum_probs=40.9

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|+|++|++.|.....|..|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCC-SSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999777 999887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.47  E-value=6.9e-14  Score=65.25  Aligned_cols=45  Identities=20%  Similarity=0.341  Sum_probs=40.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|+++++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCC-SSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999776 999877

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=5.8e-14  Score=65.49  Aligned_cols=45  Identities=24%  Similarity=0.393  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCC-CSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCC-CCCCCC
Confidence            356678999999999999999999999999999999776 999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=6e-14  Score=65.42  Aligned_cols=45  Identities=24%  Similarity=0.431  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|.+.++ |.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCS-SCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999777 999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=6.8e-14  Score=65.25  Aligned_cols=45  Identities=22%  Similarity=0.352  Sum_probs=40.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|+|++|++.|.....|..|+++|+++++ |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCS-SSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999776 999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=6.8e-14  Score=65.24  Aligned_cols=45  Identities=24%  Similarity=0.415  Sum_probs=40.9

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|+|++|++.|.....|..|+++|.++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCC-SCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCC-CCCCCC
Confidence            356678999999999999999999999999999999777 999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7.2e-14  Score=65.15  Aligned_cols=45  Identities=22%  Similarity=0.449  Sum_probs=40.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|+|+.|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCC-SCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999776 999887

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7.8e-14  Score=65.04  Aligned_cols=45  Identities=20%  Similarity=0.375  Sum_probs=40.9

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSC-SSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999777 999876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7e-14  Score=65.24  Aligned_cols=45  Identities=24%  Similarity=0.372  Sum_probs=40.9

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|+|+.|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSC-SCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            356778899999999999999999999999999999777 999876

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.3e-14  Score=64.89  Aligned_cols=45  Identities=18%  Similarity=0.303  Sum_probs=40.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|+|++|++.|.....|..|+++|.+.++ |.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERH-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSS-CCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999776 999887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.46  E-value=7.6e-14  Score=65.06  Aligned_cols=45  Identities=13%  Similarity=0.216  Sum_probs=40.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|+|+.|++.|.....|..|+++|+++++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSC-SCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCC-cCCCCC
Confidence            356678899999999999999999999999999999777 999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.7e-14  Score=64.82  Aligned_cols=45  Identities=24%  Similarity=0.399  Sum_probs=41.1

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|.++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSC-CSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            356778999999999999999999999999999999777 999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.46  E-value=8.6e-14  Score=64.84  Aligned_cols=45  Identities=20%  Similarity=0.408  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|.+.++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKP-SGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCC-CSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            356678999999999999999999999999999999776 999887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=6.9e-14  Score=65.22  Aligned_cols=45  Identities=20%  Similarity=0.362  Sum_probs=40.9

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|+++++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCS-CCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            356678999999999999999999999999999999776 999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.3e-14  Score=64.93  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|+|++|++.|.....|..|+++|++.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRP-SGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCS-SCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCC-CCCCCC
Confidence            356778899999999999999999999999999999776 999887

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.4e-14  Score=64.91  Aligned_cols=44  Identities=20%  Similarity=0.388  Sum_probs=40.4

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      +...|+++++|+|+.|++.|.....|..|+++|++.++ |.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCC-CSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCC-CCCCCC
Confidence            56678899999999999999999999999999999776 999887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=6.8e-14  Score=65.28  Aligned_cols=45  Identities=20%  Similarity=0.366  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|.++++ |.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCC-SSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            356778899999999999999999999999999999776 999887

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.46  E-value=8.5e-14  Score=64.93  Aligned_cols=45  Identities=18%  Similarity=0.237  Sum_probs=40.9

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+.+.|+++++|+|++|++.|.....|..|+++|+++++ |.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKP-SGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSC-CSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999777 999887

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.2e-14  Score=64.95  Aligned_cols=44  Identities=23%  Similarity=0.418  Sum_probs=40.5

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      +...|+++++|.|+.|++.|.....|..|+++|.++++ |.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCC-SCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            55678899999999999999999999999999999777 999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7.2e-14  Score=65.11  Aligned_cols=45  Identities=18%  Similarity=0.225  Sum_probs=40.9

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|+|+.|++.|.....|..|+++|++.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKH-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCC-SCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999777 999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=8.2e-14  Score=64.96  Aligned_cols=45  Identities=20%  Similarity=0.333  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|++.|+++++ |.|..|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKP-SGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSC-CSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            356778999999999999999999999999999999776 999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.46  E-value=9.1e-14  Score=64.80  Aligned_cols=45  Identities=20%  Similarity=0.366  Sum_probs=40.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|.++++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCC-CSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999776 999876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=9.4e-14  Score=64.75  Aligned_cols=45  Identities=16%  Similarity=0.133  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|++.++ |+|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKN-SGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSC-CCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            456778999999999999999999999999999999777 999887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7.5e-14  Score=65.10  Aligned_cols=45  Identities=24%  Similarity=0.404  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|+|++|++.|.....|..|+++|++.++ |+|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCC-CSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            356778899999999999999999999999999999776 999887

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7.4e-14  Score=65.06  Aligned_cols=45  Identities=20%  Similarity=0.361  Sum_probs=40.9

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|++.++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSC-CCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCC-CCCCCC
Confidence            356678999999999999999999999999999999777 999887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.46  E-value=7.9e-14  Score=64.96  Aligned_cols=45  Identities=20%  Similarity=0.301  Sum_probs=40.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|++.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCC-SCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999777 999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.9e-14  Score=64.83  Aligned_cols=45  Identities=18%  Similarity=0.299  Sum_probs=40.7

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|.+.++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKP-SGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCC-SSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            356678999999999999999999999999999999776 999876

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=8.5e-14  Score=64.98  Aligned_cols=45  Identities=20%  Similarity=0.295  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|+|++|++.|.....|..|+++|.++++ |.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP-SGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCC-CCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999777 999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7e-14  Score=65.14  Aligned_cols=45  Identities=22%  Similarity=0.395  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|.+.++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSC-CCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            356678999999999999999999999999999999776 999887

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=9.4e-14  Score=64.78  Aligned_cols=45  Identities=22%  Similarity=0.312  Sum_probs=40.9

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+.+.|+++++|.|++|++.|.....|..|+++|.+.++ |.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKL-SGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCC-CCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCC-CCCCCC
Confidence            356678899999999999999999999999999999777 999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=7.2e-14  Score=65.19  Aligned_cols=45  Identities=22%  Similarity=0.310  Sum_probs=40.9

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|++.++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKP-SGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCS-SCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            356678999999999999999999999999999999776 999887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=8.2e-14  Score=64.91  Aligned_cols=44  Identities=20%  Similarity=0.365  Sum_probs=40.4

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      +...|+++++|+|++|++.|.....|..|+++|.+.++ |.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKP-SGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCS-CSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            56678899999999999999999999999999999776 999887

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=7.8e-14  Score=65.03  Aligned_cols=45  Identities=24%  Similarity=0.386  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|.+.++ |.|.+|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCC-SSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCC-CCCCCC
Confidence            356678999999999999999999999999999999776 999887

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1e-13  Score=64.61  Aligned_cols=45  Identities=20%  Similarity=0.322  Sum_probs=40.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|++.++ |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSC-SSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999776 999876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=8.6e-14  Score=64.89  Aligned_cols=44  Identities=20%  Similarity=0.375  Sum_probs=40.4

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      +...|+++++|.|+.|++.|.....|..|+++|.++++ |.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCC-SCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            55678899999999999999999999999999999776 999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=9.7e-14  Score=64.65  Aligned_cols=45  Identities=20%  Similarity=0.326  Sum_probs=40.7

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .|...|+++++|+|+.|++.|.....|..|+++|++.++ |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENP-SGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCC-SCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            355678899999999999999999999999999999776 999887

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.45  E-value=1.6e-13  Score=74.68  Aligned_cols=61  Identities=20%  Similarity=0.297  Sum_probs=53.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .....|+++++|.|.+|++.|.....|..|++.|.  ++ |.|.+|++.|.....|..|++ |++
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~-~~C~~C~~~f~~~~~l~~H~~-H~~   66 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NA-AVCPYCSLRFFSPELKQEHES-KCE   66 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HS-BCCTTTCCCBSSHHHHHHHHH-HCS
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CC-ccCCCCCCccCCHHHHHHHHH-cCC
Confidence            34556788999999999999999999999999984  45 999999999999999999985 653

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.1e-13  Score=64.48  Aligned_cols=45  Identities=22%  Similarity=0.402  Sum_probs=40.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|.+.++ |.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCC-SCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999776 999887

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.44  E-value=9.9e-15  Score=72.21  Aligned_cols=54  Identities=13%  Similarity=0.217  Sum_probs=50.5

Q ss_pred             CCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCC
Q psy12010         18 YSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      +.|..|+..|.....+..|.++|++++||.|.+||+.|.....|..|+++|+|+
T Consensus         5 y~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             ccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            568888889999989999999999999999999999999999999999999984

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=64.43  Aligned_cols=45  Identities=22%  Similarity=0.304  Sum_probs=40.7

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|+++++ |+|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKC-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCS-SCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999776 999887

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=8.1e-14  Score=64.97  Aligned_cols=45  Identities=22%  Similarity=0.438  Sum_probs=41.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|+|+.|++.|.....|..|+++|.+.++ |.|.+|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCS-SCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999776 999887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.6e-13  Score=64.14  Aligned_cols=45  Identities=22%  Similarity=0.299  Sum_probs=40.9

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhh-hhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKR-DECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~-~h~~~~~~~~c~~C   80 (99)
                      .+.+.|+++++|.|+.|++.|.....|..|++ +|.+.++ |+|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~-~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP-SGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS-SSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCC-CCCCCC
Confidence            45678899999999999999999999999999 9999776 999887

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=1.9e-13  Score=63.70  Aligned_cols=45  Identities=18%  Similarity=0.317  Sum_probs=40.3

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|++.++ |.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCC-CCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999776 999864

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.42  E-value=1.7e-13  Score=63.58  Aligned_cols=43  Identities=26%  Similarity=0.396  Sum_probs=39.7

Q ss_pred             ccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCC
Q psy12010         38 VRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCP   81 (99)
Q Consensus        38 ~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~   81 (99)
                      ..|+++++|.|++|++.|.....|..|+++|++.++ |.|..||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~-~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG-KSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCC-CCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCC-CCCcCCC
Confidence            457889999999999999999999999999999777 9999986

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.41  E-value=2e-13  Score=64.25  Aligned_cols=44  Identities=25%  Similarity=0.566  Sum_probs=40.1

Q ss_pred             ccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCc
Q psy12010         38 VRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPY   82 (99)
Q Consensus        38 ~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~   82 (99)
                      ..+.++++|.|.+|++.|.....|..|+++|+++++ |.|.+|++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C~k   48 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPSSG   48 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCC-CCSCCCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCC-ccCCCCCC
Confidence            346788999999999999999999999999999777 99999986

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=3.2e-13  Score=62.95  Aligned_cols=45  Identities=22%  Similarity=0.367  Sum_probs=40.3

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|++.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCS-SCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            356678899999999999999999999999999999776 999864

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=2.3e-13  Score=63.43  Aligned_cols=44  Identities=16%  Similarity=0.315  Sum_probs=40.0

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      ..+.|+++++|.|++|++.|.....|..|+++|++.++ |.|.+|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKP-SGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCC-CSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            35578899999999999999999999999999999777 999887

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=3.3e-13  Score=62.86  Aligned_cols=43  Identities=26%  Similarity=0.485  Sum_probs=39.5

Q ss_pred             cccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         37 TVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        37 ~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      ...|+++++|.|++|++.|.....|..|+++|.+.++ |.|.+|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCC-CSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            5578899999999999999999999999999999776 999887

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=5.8e-13  Score=70.80  Aligned_cols=55  Identities=20%  Similarity=0.332  Sum_probs=49.0

Q ss_pred             CceeCCcccccccchhHHHhhhhh-hhCCCCc--------ccCCCCCccccChhHHHHHHHhhcC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRD-ECGQEPK--------YQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~-h~~~~~~--------~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ..+.|..|++.|.....|..|++. |.+. ++        |.|..|++.|.....|..|+++|+|
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~-~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~   87 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGG-PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCC-TTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHT
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCC-CCCCccceeccCCCCCCcccCCHHHHHHHHHhcCC
Confidence            357899999999999999999998 7764 44        8999999999999999999999875

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.39  E-value=7.8e-14  Score=69.22  Aligned_cols=55  Identities=15%  Similarity=0.246  Sum_probs=46.9

Q ss_pred             ccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHH
Q psy12010         33 INWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLK   91 (99)
Q Consensus        33 ~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~   91 (99)
                      +..+...|+++++|.|+.|++.|.....|.   ++|.+.++ |.|..|++.|....++.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~-~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGT-FRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTE-EBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCC-EECCCCCCccccCcccc
Confidence            345677899999999999999999988886   78888776 99999999998876653

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=5.7e-13  Score=62.04  Aligned_cols=44  Identities=25%  Similarity=0.400  Sum_probs=39.6

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|+|..|++.|.....|..|+++|++.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKP-SGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSC-CCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            456788999999999999999999999999999999777 99863

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.37  E-value=7.4e-13  Score=61.66  Aligned_cols=44  Identities=23%  Similarity=0.390  Sum_probs=39.4

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|.+.++ |.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCS-SSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            356678899999999999999999999999999999776 99864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=7e-13  Score=61.74  Aligned_cols=44  Identities=23%  Similarity=0.365  Sum_probs=39.5

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|+|..|++.|.....|..|+++|++.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCC-CSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            356778999999999999999999999999999999776 99863

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=9.1e-13  Score=61.31  Aligned_cols=44  Identities=20%  Similarity=0.409  Sum_probs=39.4

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|.|.+|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCC-CCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            356678899999999999999999999999999999776 99864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.1e-12  Score=61.07  Aligned_cols=44  Identities=23%  Similarity=0.427  Sum_probs=39.2

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|++.++ |.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCC-SSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            356678899999999999999999999999999999776 99863

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1e-12  Score=61.16  Aligned_cols=44  Identities=25%  Similarity=0.370  Sum_probs=39.4

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCC-CSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCC-CCCCC
Confidence            456788999999999999999999999999999999776 99863

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.1e-12  Score=60.95  Aligned_cols=43  Identities=19%  Similarity=0.440  Sum_probs=38.9

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      +...|+++++|.|+.|++.|.....|..|+++|.+.++ |.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSC-SCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCC-CCCCC
Confidence            55678899999999999999999999999999999776 99863

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=9.6e-13  Score=61.22  Aligned_cols=44  Identities=20%  Similarity=0.363  Sum_probs=39.3

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|++.++ |.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSC-CCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCC-CCCCC
Confidence            356678899999999999999999999999999999776 99864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.1e-12  Score=60.96  Aligned_cols=44  Identities=20%  Similarity=0.365  Sum_probs=39.4

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|.|..|++.|.....|..|+++|++.++ |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp-~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCC-SSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            356678899999999999999999999999999999776 99863

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.35  E-value=9.2e-13  Score=60.10  Aligned_cols=41  Identities=22%  Similarity=0.413  Sum_probs=36.9

Q ss_pred             cccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         37 TVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        37 ~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      ...|+++++|+|+.|++.|.....|..|+++|.++++ |.|.
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   42 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESG-PSSG   42 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCS-CCCC
T ss_pred             CCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCC-CCCC
Confidence            4568899999999999999999999999999999776 9874

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.1e-12  Score=61.08  Aligned_cols=44  Identities=23%  Similarity=0.430  Sum_probs=39.2

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCC-CCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            356678899999999999999999999999999999776 99863

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.34  E-value=1.3e-12  Score=68.48  Aligned_cols=56  Identities=29%  Similarity=0.663  Sum_probs=51.5

Q ss_pred             CCceeCCc--ccccccchhHHHhhhhhhhCCCCcccCC--CCCccccChhHHHHHHHhhcC
Q psy12010         43 SGMFPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCP--QCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        43 ~k~~~C~~--c~~~f~~~~~l~~h~~~h~~~~~~~~c~--~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .++|.|..  |++.|.....|..|++.|.+.++ |.|.  .|++.|.....|..|+++|++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~   62 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYRKHTG   62 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCC-EECCSTTTCCEESSHHHHHHHHHHHHC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCC-cCCCCCCCCCccCCHHHHHHHHHHcCC
Confidence            46799999  99999999999999999998776 9997  699999999999999998864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.4e-12  Score=60.69  Aligned_cols=44  Identities=20%  Similarity=0.379  Sum_probs=39.2

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|++.++ |.|..
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCC-CSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            356678899999999999999999999999999999776 99863

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.3e-12  Score=60.69  Aligned_cols=43  Identities=26%  Similarity=0.455  Sum_probs=38.8

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      +...|+++++|.|+.|++.|.....|..|+++|++.++ |.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p-~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCS-SCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCC-cCCCC
Confidence            55678899999999999999999999999999999776 99864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.2e-12  Score=60.84  Aligned_cols=44  Identities=23%  Similarity=0.340  Sum_probs=39.2

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERP-SGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCC-SCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            356678899999999999999999999999999999776 99863

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1e-12  Score=59.96  Aligned_cols=41  Identities=17%  Similarity=0.303  Sum_probs=37.1

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC   77 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c   77 (99)
                      +...|+++++|.|+.|++.|.....|..|+++|++.++ |.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGP-SSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCS-SCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCC-CCC
Confidence            45678899999999999999999999999999999776 886

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1.5e-12  Score=60.02  Aligned_cols=43  Identities=9%  Similarity=0.226  Sum_probs=38.5

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|.+.++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSG-PSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCC-TTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC-cCCC
Confidence            456678899999999999999999999999999999776 9874

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.1e-12  Score=61.13  Aligned_cols=43  Identities=21%  Similarity=0.427  Sum_probs=38.9

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      +.+.|+++++|+|++|++.|.....|..|+++|++.++ |.|..
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERP-SGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCS-CTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCC-CCCCC
Confidence            56678899999999999999999999999999999776 99863

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.2e-12  Score=60.88  Aligned_cols=44  Identities=18%  Similarity=0.245  Sum_probs=39.2

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|+|++|++.|.....|..|+++|++.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS-SGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCS-CSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            356678899999999999999999999999999999776 99863

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.4e-12  Score=59.97  Aligned_cols=43  Identities=19%  Similarity=0.298  Sum_probs=38.3

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|.+.++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESG-PSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSC-SCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCC-CCCC
Confidence            355678899999999999999999999999999999776 9874

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.2e-12  Score=60.87  Aligned_cols=43  Identities=21%  Similarity=0.359  Sum_probs=38.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      .+...|+++++|+|+.|++.|.....|..|+++|++.++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERH-SGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCB-TTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCC-CCCC
Confidence            356678899999999999999999999999999999776 9986

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.2e-12  Score=60.90  Aligned_cols=44  Identities=18%  Similarity=0.273  Sum_probs=39.2

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|++.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETL-SGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCS-SSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            356678899999999999999999999999999999776 99863

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.2e-12  Score=60.91  Aligned_cols=43  Identities=21%  Similarity=0.413  Sum_probs=38.7

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      +...|+++++|.|+.|++.|.....|..|+++|++.++ |.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCC-SSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCC-CCCCC
Confidence            56678899999999999999999999999999999776 99863

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.2e-12  Score=60.87  Aligned_cols=43  Identities=23%  Similarity=0.393  Sum_probs=38.8

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      +...|+++++|.|+.|++.|.....|..|+++|++.++ |.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSS-SCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            55678899999999999999999999999999999776 99864

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.33  E-value=1.3e-12  Score=59.52  Aligned_cols=41  Identities=20%  Similarity=0.357  Sum_probs=37.1

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC   77 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c   77 (99)
                      +...|+++++|.|+.|++.|.....|..|+++|+++++ |.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~-~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP-SSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCC-CCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCC-CCC
Confidence            45678899999999999999999999999999999776 886

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.6e-12  Score=60.41  Aligned_cols=44  Identities=23%  Similarity=0.345  Sum_probs=39.1

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENP-SGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCC-CSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            356678899999999999999999999999999999776 99863

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.3e-12  Score=60.73  Aligned_cols=43  Identities=19%  Similarity=0.372  Sum_probs=38.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|++.++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKP-SGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCC-SSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            356678899999999999999999999999999999776 9986

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=1.2e-14  Score=73.84  Aligned_cols=60  Identities=18%  Similarity=0.270  Sum_probs=46.4

Q ss_pred             cccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         32 FINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        32 ~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .+..|...|.++++|.|+.|++.|.....|..       .++ |.|..|++.|.....|..|+++|+|
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~-~~C~~C~~~f~~~~~l~~H~~~H~~   64 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKT-PMCEKCRKDSCQEAALNKDEGNESG   64 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSS-CCCHHHHHTCSCCCSSCCCSSCCCC
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCC-CCCCCCChhhcCHHHHHHHHHhhcC
Confidence            45556677888888888888888888777765       344 8888888888888888888887764

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=1.1e-12  Score=67.41  Aligned_cols=61  Identities=20%  Similarity=0.284  Sum_probs=55.2

Q ss_pred             CCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccC
Q psy12010         16 PEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC   77 (99)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c   77 (99)
                      ..+.|..|...|.....+..|...|.++++|.|++|++.|.....|..|+++|+++++ |.|
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p-~~C   77 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP-SSG   77 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCC-CCC
T ss_pred             CCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCC-CCC
Confidence            4567888888888888888889999999999999999999999999999999999776 987

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.5e-12  Score=60.55  Aligned_cols=43  Identities=23%  Similarity=0.456  Sum_probs=38.6

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      +...|+++++|.|++|++.|.....|..|+++|.+.++ |.|..
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCC-CCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            45678899999999999999999999999999999776 99863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.6e-12  Score=60.48  Aligned_cols=43  Identities=26%  Similarity=0.512  Sum_probs=38.7

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      +...|+++++|.|..|++.|.....|..|+++|++.++ |.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCC-CCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            55678899999999999999999999999999999776 99863

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.6e-12  Score=60.39  Aligned_cols=43  Identities=23%  Similarity=0.417  Sum_probs=38.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|.+.++ |.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKP-SGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCS-SCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC-CCCC
Confidence            356678899999999999999999999999999999776 9986

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.5e-12  Score=59.33  Aligned_cols=41  Identities=27%  Similarity=0.410  Sum_probs=37.0

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC   77 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c   77 (99)
                      +...|+++++|.|+.|++.|.....|..|+++|+++++ |.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP-SSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSC-CCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCC-CCC
Confidence            45678899999999999999999999999999999776 886

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.7e-12  Score=59.16  Aligned_cols=40  Identities=10%  Similarity=0.215  Sum_probs=36.2

Q ss_pred             cccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccC
Q psy12010         37 TVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC   77 (99)
Q Consensus        37 ~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c   77 (99)
                      ...|+++++|+|+.|++.|.....|..|+++|.+.++ |+|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   41 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSG-PSS   41 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSS-CCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCC-CCC
Confidence            4568899999999999999999999999999999776 987

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.3e-12  Score=59.65  Aligned_cols=41  Identities=22%  Similarity=0.495  Sum_probs=36.9

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC   77 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c   77 (99)
                      +...|+++++|+|++|++.|.....|..|++.|++.++ |+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP-SSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSS-TTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCC-CCC
Confidence            45678899999999999999999999999999999776 886

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.1e-12  Score=60.38  Aligned_cols=43  Identities=21%  Similarity=0.300  Sum_probs=38.4

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      .+...|+++++|+|++|++.|.....|..|+++|.+.++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSG-PSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCS-CCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCC-CCCC
Confidence            456788999999999999999999999999999999776 9874

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.6e-12  Score=60.45  Aligned_cols=43  Identities=16%  Similarity=0.244  Sum_probs=38.7

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhC-CCCcccCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECG-QEPKYQCP   78 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~-~~~~~~c~   78 (99)
                      .+...|+++++|.|+.|++.|.....|..|+++|++ .++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~-~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKS-GPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTT-SSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCC-CCCC
Confidence            356678899999999999999999999999999998 777 9986

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.5e-12  Score=59.87  Aligned_cols=42  Identities=21%  Similarity=0.331  Sum_probs=37.7

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      +...|+++++|.|++|++.|.....|..|+++|+++++ |.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESG-PSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSS-SCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCC-CCCC
Confidence            45678899999999999999999999999999999776 9874

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2e-12  Score=59.52  Aligned_cols=43  Identities=14%  Similarity=0.235  Sum_probs=38.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      .+...|+++++|+|++|++.|.....|..|+++|+++++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG-PSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCS-SCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCC-CCCC
Confidence            355678899999999999999999999999999999776 9873

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.4e-12  Score=59.10  Aligned_cols=41  Identities=17%  Similarity=0.334  Sum_probs=37.1

Q ss_pred             ccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         38 VRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        38 ~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      ..|+++++|.|+.|++.|.....|..|+++|++.++ |.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKS-GPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTC-SSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCC-ccCCC
Confidence            467889999999999999999999999999999776 99863

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.31  E-value=9.3e-13  Score=63.42  Aligned_cols=46  Identities=17%  Similarity=0.200  Sum_probs=26.1

Q ss_pred             CCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCC
Q psy12010         28 NESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEP   73 (99)
Q Consensus        28 ~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~   73 (99)
                      .....+..+...|+++++|.|..|++.|.....|..|+++|+++++
T Consensus         7 ~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   52 (54)
T 1yui_A            7 KHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             SCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSC
T ss_pred             CCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCC
Confidence            3334445555555666666666666666666666666666655443

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.3e-12  Score=60.36  Aligned_cols=44  Identities=25%  Similarity=0.413  Sum_probs=39.8

Q ss_pred             ccccccCCCceeCC--cccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         36 PTVRQYNSGMFPCD--VCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        36 ~~~~~~~~k~~~C~--~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      +.+.|+++++|+|.  .|++.|.....|..|+++|++.++ |+|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCS-CSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            45678899999998  899999999999999999999776 999887

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.7e-12  Score=60.09  Aligned_cols=43  Identities=23%  Similarity=0.398  Sum_probs=38.2

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      +...|+++++|+|.+|++.|.....|..|+++|+++++ |.|.+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKS-GPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCC-CCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCC-CCCCC
Confidence            34568899999999999999999999999999999776 99863

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.6e-12  Score=60.45  Aligned_cols=43  Identities=19%  Similarity=0.360  Sum_probs=38.8

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|.+.++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDP-SGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCC-SSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            356678899999999999999999999999999999776 9985

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.7e-12  Score=60.43  Aligned_cols=43  Identities=19%  Similarity=0.262  Sum_probs=38.9

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      .+...|.++++|+|++|++.|.....|..|+++|+++++ |.|.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKS-SGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTC-CCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            356678899999999999999999999999999999777 9986

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.2e-12  Score=59.45  Aligned_cols=42  Identities=19%  Similarity=0.374  Sum_probs=38.0

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC   77 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c   77 (99)
                      .+...|+++++|.|++|++.|.....|..|+++|++.++ |.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSG-PSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCC-CSC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCC-CCC
Confidence            356678899999999999999999999999999999776 987

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.30  E-value=6.3e-12  Score=67.19  Aligned_cols=57  Identities=28%  Similarity=0.605  Sum_probs=52.1

Q ss_pred             CCCceeCCc--ccccccchhHHHhhhhhhhCCCCcccCC--CCCccccChhHHHHHHHhhcC
Q psy12010         42 NSGMFPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCP--QCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        42 ~~k~~~C~~--c~~~f~~~~~l~~h~~~h~~~~~~~~c~--~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ..++|.|..  |++.|.....|..|++.|.+.++ |.|.  .|++.|.....|..|+++|++
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~   72 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGCDWRFARSDELTRHYRKHTG   72 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCC-EECCSSSCCCEESSHHHHHHHHHHHTS
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCC-eeCCCCCCCCccCCHHHHHHHHHHhCC
Confidence            457899996  99999999999999999998777 9996  699999999999999999874

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=3e-12  Score=59.00  Aligned_cols=42  Identities=17%  Similarity=0.210  Sum_probs=37.6

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      +...|.++++|.|++|++.|.....|..|+++|++.++ |.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESG-PSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCC-CCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCC-CCCC
Confidence            45678899999999999999999999999999999776 9884

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4.1e-12  Score=59.11  Aligned_cols=41  Identities=20%  Similarity=0.305  Sum_probs=37.5

Q ss_pred             cccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         37 TVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        37 ~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      .+.|+++++|.|+.|++.|.....|..|+++|++.++ |.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKP-SGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCC-SSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCC-CCCC
Confidence            4567899999999999999999999999999999777 9986

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.7e-12  Score=59.62  Aligned_cols=42  Identities=19%  Similarity=0.426  Sum_probs=38.4

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      +...|+++++|.|+.|++.|.....|..|+++|.+.++ |.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKP-SGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCC-CCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            56678899999999999999999999999999999776 9986

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.28  E-value=1.6e-12  Score=66.26  Aligned_cols=61  Identities=15%  Similarity=0.314  Sum_probs=54.0

Q ss_pred             CCCCCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCC
Q psy12010         13 DLFPEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEP   73 (99)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~   73 (99)
                      .....+.|..|...|.....+..|...|.++++|+|.+|++.|.....|..|+++|+++++
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            3344568888988888888889999999999999999999999999999999999998765

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=3.2e-12  Score=57.98  Aligned_cols=39  Identities=26%  Similarity=0.521  Sum_probs=35.6

Q ss_pred             ccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccC
Q psy12010         38 VRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC   77 (99)
Q Consensus        38 ~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c   77 (99)
                      ..|+++++|+|+.|++.|.....|..|+++|+++++ |.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP-SSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSC-SCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCC-cCC
Confidence            467889999999999999999999999999999776 886

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=5.9e-12  Score=58.01  Aligned_cols=42  Identities=21%  Similarity=0.341  Sum_probs=37.2

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC   77 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c   77 (99)
                      .+...|+++++|+|++|++.|.....|..|+++|+++++ |.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSG-PSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSC-CCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCC-CCC
Confidence            356778899999999999999999999999999999776 875

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.22  E-value=5.7e-12  Score=65.65  Aligned_cols=67  Identities=15%  Similarity=0.345  Sum_probs=56.8

Q ss_pred             CCCCCCCccccCCcccccCccccccCC----CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccc
Q psy12010         17 EYSFNWPEVHLNESDFINWPTVRQYNS----GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA   84 (99)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f   84 (99)
                      .+.|..|...|.....+..|...+.+.    ++|.|.+|++.|.....|..|++.|.+.++ +.|..|+..+
T Consensus        15 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~-~~~~~~~~~~   85 (86)
T 1x6h_A           15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG-VEGENSGPSS   85 (86)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCS-CCCCCCCCCC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCC-cccCCCCCCC
Confidence            367888888888877777777655554    789999999999999999999999999777 9999998765

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=5.2e-12  Score=64.90  Aligned_cols=64  Identities=20%  Similarity=0.285  Sum_probs=54.9

Q ss_pred             cccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         32 FINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        32 ~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .+..|...+.+.+++.|..|++.|. ...|..|+ .+.+.++ +.|..|++.|. ...|..|++++.+
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~-~~C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGART-ELCGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCE-EECSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCc-eEcccCCCcCc-HHHHHHHHHHccC
Confidence            3556677788999999999999995 88999999 8888676 99999999887 5889999988764

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.22  E-value=1.3e-11  Score=59.28  Aligned_cols=47  Identities=23%  Similarity=0.448  Sum_probs=42.9

Q ss_pred             cccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         52 GKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        52 ~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ++.|.....|..|++.|.+.++ |.|.+|++.|...+.|..|+++|+|
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   49 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQP-ATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCC-EECTTTCCEESSHHHHHHHHHHHTT
T ss_pred             ccccCCCcchhhHHHhcCCCCC-ccCCCCCcccCCHHHHHHHHHHhcc
Confidence            4678888889999999999777 9999999999999999999999975

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1e-11  Score=65.89  Aligned_cols=61  Identities=15%  Similarity=0.103  Sum_probs=52.7

Q ss_pred             CCCCCCCccccCCcccccCcccc-ccCCCc--------eeCCcccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         17 EYSFNWPEVHLNESDFINWPTVR-QYNSGM--------FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~--------~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      .+.|..|...|.....+..|... |.++++        |.|..|++.|.....|..|+++|+++++ |.|.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKS-GPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCC-CSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCC-CCCC
Confidence            34577788888888788888876 888887        9999999999999999999999999877 9986

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.18  E-value=1.8e-12  Score=70.40  Aligned_cols=64  Identities=14%  Similarity=0.218  Sum_probs=54.4

Q ss_pred             CCCCCCCccccCCcccccCccc-cc---cCCCceeCCcccccccchhHHHhh-hhhhhCCCCcccCCCCC
Q psy12010         17 EYSFNWPEVHLNESDFINWPTV-RQ---YNSGMFPCDVCGKKYKYKWGLSRH-KRDECGQEPKYQCPQCP   81 (99)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~-~~---~~~k~~~C~~c~~~f~~~~~l~~h-~~~h~~~~~~~~c~~C~   81 (99)
                      .+.|..|+..|.....+..+.. .|   .++++|.|.+||+.|.....|..| +++|+++++ |.|..+.
T Consensus        18 py~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekp-y~C~~~~   86 (102)
T 2ghf_A           18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEEN-FKLTMVK   86 (102)
T ss_dssp             SEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCC-EEEEECC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCC-eeCCccc
Confidence            3578888888888777777775 58   568999999999999999999999 899999777 9998653

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.15  E-value=1e-11  Score=60.05  Aligned_cols=55  Identities=13%  Similarity=0.279  Sum_probs=49.5

Q ss_pred             CCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCC
Q psy12010         18 YSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQE   72 (99)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~   72 (99)
                      +.|..|+..|.....+..|...|.++++|.|+.|++.|.....|..|+++|.+++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            4677788888888888889999999999999999999999999999999998754

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.13  E-value=2.2e-12  Score=68.30  Aligned_cols=58  Identities=10%  Similarity=0.141  Sum_probs=46.1

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhc
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      +...|+++++|.|+.|++.|.....|..|+++|+++++ |.|..|..    ...|..|+++|.
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp-~~C~~~~~----~~~~~~~~~~~~   73 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQ-KRAKRQER----RKQLLSKQKYAD   73 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHH-HHCCCCSC----CCCCCCCCCCCC
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCC-cccchhhh----HHHHHhhhcccc
Confidence            35678899999999999999999999999999999776 99987643    344444555543

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.12  E-value=4.1e-11  Score=52.93  Aligned_cols=35  Identities=29%  Similarity=0.538  Sum_probs=18.6

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |++.|.+.++ |.|..|++.|.....|..|+++|+|
T Consensus         2 H~~~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSS-BCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCC-ccCCCCCcccCcHHHHHHHHHHhcc
Confidence            3444555444 5555555555555555555555543

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.12  E-value=4.9e-11  Score=53.38  Aligned_cols=37  Identities=11%  Similarity=0.314  Sum_probs=32.5

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccC
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQC   77 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c   77 (99)
                      |+++++|.|..|++.|.....|..|+++|+++++ |.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA-RLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCT-TTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcc-cee
Confidence            4678999999999999999999999999999776 865

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.12  E-value=1.6e-11  Score=64.52  Aligned_cols=57  Identities=14%  Similarity=0.130  Sum_probs=50.5

Q ss_pred             CCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhh-hhhhCCC
Q psy12010         16 PEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHK-RDECGQE   72 (99)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~-~~h~~~~   72 (99)
                      ..+.|..|+..|.....+..|.+.|++++||.|++|++.|.....|..|+ +.|+++.
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            34578999999999999999999999999999999999999999999997 5677643

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.10  E-value=3.5e-11  Score=60.55  Aligned_cols=57  Identities=14%  Similarity=0.126  Sum_probs=51.5

Q ss_pred             CCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCC
Q psy12010         17 EYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEP   73 (99)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~   73 (99)
                      .+.|..|...|.....+..|...|.++++|.|++|++.|.....|..|++.|+++++
T Consensus         9 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            9 PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            467888888888888888888999999999999999999999999999999998665

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=9.4e-11  Score=51.73  Aligned_cols=34  Identities=15%  Similarity=0.331  Sum_probs=27.0

Q ss_pred             cccCCCceeCCcccccccchhHHHhhhhhhhCCC
Q psy12010         39 RQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQE   72 (99)
Q Consensus        39 ~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~   72 (99)
                      .|+++++|.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            5677788888888888888888888888887754

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.06  E-value=1.7e-10  Score=50.86  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=32.2

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +.+.|+++++|+|+.|++.|.....|..|++.|.+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            45678899999999999999999999999999976

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.06  E-value=1.6e-10  Score=50.27  Aligned_cols=33  Identities=27%  Similarity=0.450  Sum_probs=25.4

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhhhhhCCC
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQE   72 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~   72 (99)
                      |+++++|.|..|++.|.....|..|++.|++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            567778888888888888888888888777644

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.05  E-value=1.9e-10  Score=50.11  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=26.0

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhhhhhCCC
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQE   72 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~   72 (99)
                      |+++++|.|..|++.|.....|..|++.|++.+
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            567788888888888888888888888887643

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.1e-10  Score=52.91  Aligned_cols=35  Identities=23%  Similarity=0.527  Sum_probs=31.4

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |+++|.+.++ |.|..|++.|...+.|.+|+++|++
T Consensus         1 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   35 (42)
T 2yte_A            1 GSSGSSGEKP-YSCAECKETFSDNNRLVQHQKMHTV   35 (42)
T ss_dssp             CCSSSCSCCS-CBCTTTCCBCSSHHHHHHHHHHTSC
T ss_pred             CCcCcCCCCC-eECCCCCCccCCHHHHHHHHHHhCC
Confidence            5677888776 9999999999999999999999875

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.05  E-value=9.1e-11  Score=53.25  Aligned_cols=35  Identities=23%  Similarity=0.538  Sum_probs=31.5

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |+++|++.++ |.|..|++.|...+.|.+|+++|+|
T Consensus         1 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   35 (42)
T 2el5_A            1 GSSGSSGENP-YECSECGKAFNRKDQLISHQRTHAG   35 (42)
T ss_dssp             CCSSSSSCCS-EECSSSCCEESSHHHHHHHHGGGCC
T ss_pred             CCCCCCCCCC-ccCCCcChhhCCHHHHHHHHHhcCC
Confidence            5678888776 9999999999999999999999875

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.04  E-value=3.8e-11  Score=57.96  Aligned_cols=54  Identities=11%  Similarity=0.164  Sum_probs=47.8

Q ss_pred             CCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         17 EYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      .+.|..|...|.....+..+...|.++++|.|+.|++.|.....|..|++.|++
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            457888888888888888999999999999999999999999999999998863

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.04  E-value=2e-10  Score=57.81  Aligned_cols=39  Identities=13%  Similarity=0.101  Sum_probs=34.3

Q ss_pred             ccCCCceeCCc--ccccccchhHHHhhh-hhhhCCCCcccCCC
Q psy12010         40 QYNSGMFPCDV--CGKKYKYKWGLSRHK-RDECGQEPKYQCPQ   79 (99)
Q Consensus        40 ~~~~k~~~C~~--c~~~f~~~~~l~~h~-~~h~~~~~~~~c~~   79 (99)
                      .+++|||+|..  |++.|.+.++|..|+ ++|++++| +.|.+
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP-~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP-AFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC-CCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCC-ccccc
Confidence            46899999975  999999999999997 68999887 98864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=9.4e-11  Score=53.84  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|.+|++.|...+.|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (44)
T 2epv_A            2 SSGSSGSGEKP-YECNECGKAFIWKSLLIVHERTHAG   37 (44)
T ss_dssp             CCCCCCCCCCS-EECSSSCCEESSHHHHHHHHGGGSS
T ss_pred             CCCcccCCCcC-eECCCCCcccCchHHHHHHHhHhcC
Confidence            47888988776 9999999999999999999999875

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.3e-10  Score=53.81  Aligned_cols=36  Identities=22%  Similarity=0.499  Sum_probs=32.8

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|+++|++.++ |.|..|++.|...+.|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytj_A            2 SSGSSGTGEKP-YICAECGKAFTIRSNLIKHQKIHTK   37 (46)
T ss_dssp             CSSCTTSSCCS-EECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CcccCCCCCcC-eECCCCChhhCCHHHHHHHHHHcCC
Confidence            57889999777 9999999999999999999999875

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.03  E-value=1e-10  Score=59.16  Aligned_cols=57  Identities=18%  Similarity=0.223  Sum_probs=50.9

Q ss_pred             CCCCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCC
Q psy12010         16 PEYSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQE   72 (99)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~   72 (99)
                      ..+.|..|...|.....+..|...|.++++|.|++|++.|.....|..|+++|++..
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            346788888888888888889999999999999999999999999999999998843

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=2.3e-10  Score=51.30  Aligned_cols=32  Identities=16%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             ccCCCceeCCc--ccccccchhHHHhhhhhhhCC
Q psy12010         40 QYNSGMFPCDV--CGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        40 ~~~~k~~~C~~--c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      +++++||+|+.  |++.|..+..|..|+++|++.
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            45667777764  777777777777777777653

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.02  E-value=1.2e-10  Score=53.93  Aligned_cols=36  Identities=25%  Similarity=0.528  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|+++|++.++ |.|.+|++.|...+.|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2emk_A            2 SSGSSGTGEKP-YECKECGKAFSQTTHLIQHQRVHTG   37 (46)
T ss_dssp             CCCCCCSSSCS-CBCSSSCCBCSCHHHHHHHHHHHSS
T ss_pred             CCCCccCCCCc-eECCCCCchhCCHHHHHHHHHHcCC
Confidence            57888988776 9999999999999999999999875

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.1e-10  Score=54.01  Aligned_cols=36  Identities=25%  Similarity=0.557  Sum_probs=32.8

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|+++|++.++ |.|..|++.|...+.|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eml_A            2 SSGSSGTGEKP-YECSVCGKAFSHRQSLSVHQRIHSG   37 (46)
T ss_dssp             CCCCCCSSCCS-EECSSSCCEESSHHHHHHHHGGGSS
T ss_pred             CccCCcCCCCC-eeCCCcCCccCCHHHHHHHHHHhcC
Confidence            57888999776 9999999999999999999999875

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=7.8e-11  Score=53.43  Aligned_cols=36  Identities=31%  Similarity=0.603  Sum_probs=32.3

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|...+.|..|+++|+|
T Consensus         1 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   36 (42)
T 2ytb_A            1 GSSGSSGGEKP-YRCDQCGKAFSQKGSLIVHIRVHTG   36 (42)
T ss_dssp             CCCCCCCSCCS-BCCTTTTCCBSSHHHHHTTGGGTSC
T ss_pred             CCccccCCCCC-eeCCCccchhCCHHHHHHHHHHhCC
Confidence            37788888776 9999999999999999999999875

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.3e-10  Score=53.73  Aligned_cols=36  Identities=19%  Similarity=0.401  Sum_probs=32.8

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eq4_A            2 SSGSSGTGEKL-YNCKECGKSFSRAPCLLKHERLHSG   37 (46)
T ss_dssp             CCCCCSSCCCC-CCBTTTTBCCSCHHHHHHHHHHCCS
T ss_pred             CCcccCCCCCC-eECCCCCCccCchHHHHHHHHhcCC
Confidence            57888999777 9999999999999999999999875

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.01  E-value=1.2e-10  Score=53.99  Aligned_cols=36  Identities=25%  Similarity=0.528  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2emj_A            2 SSGSSGTGEKP-FECAECGKSFSISSQLATHQRIHTG   37 (46)
T ss_dssp             CCCCCCCCCCS-EECSSSSCEESSHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCC-EECCCCCcccCCHHHHHHHHHHhCC
Confidence            47888998776 9999999999999999999999875

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.1e-10  Score=54.07  Aligned_cols=36  Identities=25%  Similarity=0.491  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|...+.|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2ytp_A            2 SSGSSGTGERH-YECSECGKAFARKSTLIMHQRIHTG   37 (46)
T ss_dssp             CCCCSSCCCCC-EECSSSCCEESSHHHHHHHHTTTSC
T ss_pred             CcccCcCCCCC-eECCcCCcccCCHHHHHHHHHHhCC
Confidence            47888998777 9999999999999999999999875

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.1e-10  Score=54.03  Aligned_cols=36  Identities=25%  Similarity=0.570  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|+++|++.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ep3_A            2 SSGSSGTGEKP-YRCAECGKAFTDRSNLFTHQKIHTG   37 (46)
T ss_dssp             CCCSSSSCCCS-EECSSSCCEESSHHHHHHHHTTTTT
T ss_pred             CCCCCCCCCCC-eECCCCCchhCCHHHHHHHHHHcCC
Confidence            57888999776 9999999999999999999999875

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.5e-10  Score=53.48  Aligned_cols=36  Identities=22%  Similarity=0.512  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|+++|.+.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eov_A            2 SSGSSGTGEKP-YKCSDCGKSFTWKSRLRIHQKCHTG   37 (46)
T ss_dssp             CCCCCCSSCCS-CBCSSSCCBCSSHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCC-ccCCccChhhCCHHHHHHHHHhcCC
Confidence            57888988776 9999999999999999999999875

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.3e-10  Score=53.23  Aligned_cols=36  Identities=22%  Similarity=0.408  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|.....|..|+++|+|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2en7_A            2 SSGSSGTGMKP-YVCNECGKAFRSKSYLIIHTRTHTG   37 (44)
T ss_dssp             CSCCCSSSSSS-SCCTTTCCCCSSHHHHHHHHTTTCC
T ss_pred             CCCcCCCCCcC-eECCCCCCccCCHHHHHHHhhhcCC
Confidence            47888988776 9999999999999999999999875

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.01  E-value=1.4e-10  Score=53.66  Aligned_cols=36  Identities=19%  Similarity=0.464  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|...+.|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2em0_A            2 SSGSSGMGEKT-WKCRECDMCFSQASSLRLHQNVHVG   37 (46)
T ss_dssp             CCCCCSCCCCC-CCCSSSCCCCSSHHHHHHHGGGGSS
T ss_pred             CCcCccCCCcC-eECCCCCcccCCHHHHHHHHHHcCC
Confidence            47888988777 9999999999999999999999875

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.4e-10  Score=53.59  Aligned_cols=36  Identities=25%  Similarity=0.555  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ep1_A            2 SSGSSGTGEKP-YECSDCGKSFIKKSQLHVHQRIHTG   37 (46)
T ss_dssp             CCCCCCSSCCS-SCCSSSCCCCSSHHHHHHHHGGGSS
T ss_pred             ccccCCCCCCC-cCCCCCCchhCCHHHHHHHHHHhCC
Confidence            57888988776 9999999999999999999999875

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.3e-10  Score=53.75  Aligned_cols=36  Identities=28%  Similarity=0.504  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2emi_A            2 SSGSSGTGERH-YECSECGKAFIQKSTLSMHQRIHRG   37 (46)
T ss_dssp             CCCCSCSSCCC-EECSSSCCEESSHHHHHHHHGGGCS
T ss_pred             CCCcccCCCCC-CCCCCCCcccCCHHHHHHHHhHhCC
Confidence            47888998777 9999999999999999999999875

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.5e-10  Score=53.54  Aligned_cols=36  Identities=25%  Similarity=0.540  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|...+.|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2ytn_A            2 SSGSSGTGKKP-YKCNECGKVFTQNSHLARHRGIHTG   37 (46)
T ss_dssp             CCCCCCSCCSS-CBCTTTCCBCSSHHHHHHHGGGTSC
T ss_pred             CCCcCCCCCcC-eECCCCCCeeCCHHHHHHHhhhcCC
Confidence            47888988777 9999999999999999999999875

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.4e-10  Score=53.66  Aligned_cols=36  Identities=28%  Similarity=0.532  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eq2_A            2 SSGSSGTGGKP-YQCNECGKAFSQTSKLARHQRVHTG   37 (46)
T ss_dssp             CCCCSSSSSCS-SSCCSSCCCCSSHHHHHHHGGGGCC
T ss_pred             CcccccCCCCC-eECCCCCcccCCHHHHHHHHHHcCC
Confidence            47888988776 9999999999999999999999875

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.3e-10  Score=53.81  Aligned_cols=36  Identities=28%  Similarity=0.540  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2em3_A            2 SSGSSGTGEKP-YECKVCSKAFTQKAHLAQHQKTHTG   37 (46)
T ss_dssp             CCCCCCSSCCS-EECSSSCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCcC-eECCCCCcccCCHHHHHHHHHHhCC
Confidence            57888988776 9999999999999999999999875

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.4e-10  Score=53.63  Aligned_cols=36  Identities=25%  Similarity=0.416  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|...+.|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2emm_A            2 SSGSSGTGERP-HKCNECGKSFIQSAHLIQHQRIHTG   37 (46)
T ss_dssp             CCCSCSSCCCS-EECSSSCCEESSHHHHHHHHHHHSC
T ss_pred             CCcCCcCCCCC-eeCCCCChhhCCHHHHHHHHHHhCC
Confidence            57888998776 9999999999999999999999875

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.3e-10  Score=53.81  Aligned_cols=36  Identities=22%  Similarity=0.515  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2yto_A            2 SSGSSGTGEKP-YKCSDCGKAFTRKSGLHIHQQSHTG   37 (46)
T ss_dssp             CCCCCCCSCCC-EECSSSCCEESSHHHHHHHHHHHTC
T ss_pred             CcccccCCCCC-EECcccCCccCCHhHHHHHHHHcCC
Confidence            57888988776 9999999999999999999999875

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.5e-10  Score=53.01  Aligned_cols=36  Identities=22%  Similarity=0.515  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|..|+++|+|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2eof_A            2 SSGSSGTGEKP-YECNECQKAFNTKSNLMVHQRTHTG   37 (44)
T ss_dssp             CCSSCCSCCCS-EECTTTCCEESCHHHHHHHHHHTTT
T ss_pred             CCccCCCCCCC-eECCCCCcccCCHhHHHHHHHHhCC
Confidence            47888988777 9999999999999999999999875

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.4e-10  Score=53.57  Aligned_cols=36  Identities=22%  Similarity=0.525  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eow_A            2 SSGSSGTGEKP-YKCNECGKAFRARSSLAIHQATHSG   37 (46)
T ss_dssp             CCCCCSCCCCC-EECTTSCCEESSHHHHHHHHHHHCC
T ss_pred             CccCCCCCCCC-eeccccCChhcCHHHHHHHHHHcCC
Confidence            57888988777 9999999999999999999999875

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.2e-10  Score=53.38  Aligned_cols=36  Identities=19%  Similarity=0.458  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.++++ |.|.+|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2yu5_A            2 SSGSSGAGENP-FKCSKCDRVFTQRNYLVQHERTHAR   37 (44)
T ss_dssp             CCSCCCSCCCS-EECSSSSCEESSSHHHHHHHHHCCC
T ss_pred             CCccccCCCCC-eECCCCCchhCCHHHHHHHhHhcCC
Confidence            47888988776 9999999999999999999999875

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.4e-10  Score=53.69  Aligned_cols=36  Identities=22%  Similarity=0.507  Sum_probs=32.3

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eoh_A            2 SSGSSGSGKKP-YECKECRKTFIQIGHLNQHKRVHTG   37 (46)
T ss_dssp             CCCCSCCCSCS-CCCSSSCCCCSSHHHHHHHHHHCSS
T ss_pred             CCCCCcCCCCC-cCCCCcCchhCCHHHHHHHHHHhCC
Confidence            47788988776 9999999999999999999999875

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.3e-10  Score=53.79  Aligned_cols=36  Identities=25%  Similarity=0.491  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|...+.|..|+++|+|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2emy_A            2 SSGSSGTGENP-YECHECGKAFSRKYQLISHQRTHAG   37 (46)
T ss_dssp             CCCCCCCSSCC-EECSSSCCEESSHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCcC-cCCCCCCcccCcHHHHHHHHHHcCC
Confidence            57888988776 9999999999999999999999875

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.3e-10  Score=53.72  Aligned_cols=36  Identities=25%  Similarity=0.529  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2enf_A            2 SSGSSGTGEKP-YKCNECGKVFTQNSHLVRHRGIHTG   37 (46)
T ss_dssp             CCCCCCCCCCS-CBCSSSCCBCSSHHHHHHHHTTTTT
T ss_pred             CCCcCCCCCcC-eECCCCCcccCCHHHHHHHHHhhCC
Confidence            47888988776 9999999999999999999999875

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.2e-10  Score=53.86  Aligned_cols=36  Identities=22%  Similarity=0.489  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|+++|.+.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2emh_A            2 SSGSSGTGERP-YICTVCGKAFTDRSNLIKHQKIHTG   37 (46)
T ss_dssp             CCCCSCSCCCS-EECTTTCCEESSHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCC-cCCCCCCchhCCHHHHHHHHHhcCC
Confidence            57888988776 9999999999999999999999875

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.2e-10  Score=53.99  Aligned_cols=36  Identities=19%  Similarity=0.470  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|...+.|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2eoo_A            2 SSGSSGSGERP-YGCNECGKNFGRHSHLIEHLKRHFR   37 (46)
T ss_dssp             CCCCCCSCCCC-EECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCC-EEccccCcccCCHHHHHHHHHHHcC
Confidence            57888999777 9999999999999999999999874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.6e-10  Score=53.47  Aligned_cols=36  Identities=25%  Similarity=0.612  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2yth_A            2 SSGSSGSGEKP-FQCEECGKRFTQNSHLHSHQRVHTG   37 (46)
T ss_dssp             CCCSCCCCSSS-BCCSSSCCCBSSHHHHHHHGGGGTT
T ss_pred             CcccCCCCCcC-CCCCCCCcccCCHHHHHHHHHhcCC
Confidence            57888988776 9999999999999999999999875

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.00  E-value=1.4e-10  Score=53.62  Aligned_cols=36  Identities=22%  Similarity=0.466  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|+++|++.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ema_A            2 SSGSSGTGEKR-YKCNECGKVFSRNSQLSQHQKIHTG   37 (46)
T ss_dssp             CSCSSCTTSCC-EECSSSCCEESSHHHHHHHHTGGGC
T ss_pred             CCccCCCCCcC-cCCCCCcchhCCHHHHHHHHHhcCC
Confidence            57888998777 9999999999999999999999875

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=9.7e-11  Score=54.26  Aligned_cols=36  Identities=22%  Similarity=0.490  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|+++|++.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eoz_A            2 SSGSSGTGEKP-YSCNVCGKAFVLSAHLNQHLRVHTQ   37 (46)
T ss_dssp             CSCCCCSSCCS-EEETTTTEEESSHHHHHHHHHHHSS
T ss_pred             CccccCCCCCC-eECcccChhhCCHHHHHHHHHHhCC
Confidence            57888988776 9999999999999999999999875

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.5e-10  Score=53.03  Aligned_cols=35  Identities=23%  Similarity=0.444  Sum_probs=31.5

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |+++|.+.++ |.|..|++.|...+.|.+|+++|++
T Consensus         1 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   35 (44)
T 2emx_A            1 GSSGSSGEKP-FGCSCCEKAFSSKSYLLVHQQTHAE   35 (44)
T ss_dssp             CCCCCSSCCC-EECSSSSCEESSHHHHHHHHHHHTS
T ss_pred             CCCCcCCCcC-ccCCCCCcccCCHHHHHHHHHHhCC
Confidence            5678888777 9999999999999999999999875

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.6e-10  Score=53.46  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eop_A            2 SSGSSGTGEKP-HECRECGKSFSFNSQLIVHQRIHTG   37 (46)
T ss_dssp             CCCCSCCCCCS-CBCTTTCCBCSSHHHHHHHHTTTTT
T ss_pred             CCccccCCCCC-eeCCCCCchhCCHHHHHHHHHHcCC
Confidence            57888988776 9999999999999999999999875

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.5e-10  Score=53.58  Aligned_cols=36  Identities=25%  Similarity=0.550  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eq1_A            2 SSGSSGTGEKP-YKCNECGKAFRAHSNLTTHQVIHTG   37 (46)
T ss_dssp             CCCCCCCCSCC-CCCTTTTCCCSSHHHHHHHHTTTCC
T ss_pred             CcccccCCCCC-eECCcCChhhCCHHHHHHHHHHhCC
Confidence            57888988776 9999999999999999999999875

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.6e-10  Score=53.45  Aligned_cols=36  Identities=25%  Similarity=0.461  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2em4_A            2 SSGSSGTGQRP-YECIECGKAFKTKSSLICHRRSHTG   37 (46)
T ss_dssp             CSCCCCCCSSS-EECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CCccccCCCcC-cCCCCCCCccCCHHHHHHHHHhcCC
Confidence            47888988776 9999999999999999999999875

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.7e-10  Score=53.33  Aligned_cols=36  Identities=17%  Similarity=0.474  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|.+|++.|.....|.+|+++|+|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eoq_A            2 SSGSSGTGEKP-FKCDICGKSFCGRSRLNRHSMVHTA   37 (46)
T ss_dssp             CCCCCSSSSCS-CCCSSSCCCCSSHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCC-cCCCcCCchhCCHHHHHHHHHHcCC
Confidence            47888988776 9999999999999999999999875

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.4e-10  Score=53.65  Aligned_cols=36  Identities=22%  Similarity=0.471  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2emf_A            2 SSGSSGTGGKH-FECTECGKAFTRKSTLSMHQKIHTG   37 (46)
T ss_dssp             CCCSSSSSSCC-EECSSSCCEESCHHHHHHHGGGTSC
T ss_pred             ccccccCCCCC-eECCCCCchhCCHHHHHHHHHHhCC
Confidence            47888988776 9999999999999999999999875

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.6e-10  Score=53.43  Aligned_cols=36  Identities=28%  Similarity=0.554  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|.+|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytr_A            2 SSGSSGTGEKP-YKCNECGKAFSQTSKLARHQRIHTG   37 (46)
T ss_dssp             CSSCCCSSCCT-TCCTTTCCCCSSHHHHHHHHTTTTT
T ss_pred             CCCcCCCCCcC-cCCCCCCCccCCHHHHHHHHHhcCC
Confidence            57888999777 9999999999999999999999875

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.5e-10  Score=52.57  Aligned_cols=35  Identities=31%  Similarity=0.616  Sum_probs=31.6

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |+++|.+.++ |.|.+|++.|...+.|..|+++|++
T Consensus         2 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   36 (42)
T 2eos_A            2 SSGSSGGEKP-YPCEICGTRFRHLQTLKSHLRIHTG   36 (42)
T ss_dssp             CCSCCSSSCC-BCCSSSCCCBSSHHHHHHHTTTTSC
T ss_pred             CCcccCCCCC-EECCCCCCccCCHHHHHHHHHhcCC
Confidence            6778888776 9999999999999999999999875

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.5e-10  Score=53.53  Aligned_cols=36  Identities=25%  Similarity=0.541  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2yti_A            2 SSGSSGTGEKP-YKCNECGKVFTQNSHLARHRGIHTG   37 (46)
T ss_dssp             CCCCCCSCCCT-TCCSSSCCCCSSHHHHHHHHTTTSC
T ss_pred             CCCcCCCCCcC-eECCCCCcccCChhHHHHHhHhcCC
Confidence            47788988777 9999999999999999999999875

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.6e-10  Score=53.43  Aligned_cols=36  Identities=22%  Similarity=0.484  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2emg_A            2 SSGSSGTGENP-FICSECGKVFTHKTNLIIHQKIHTG   37 (46)
T ss_dssp             CCCCCCCSCCS-CBCTTTCCBCSSHHHHHHHHTTTSC
T ss_pred             CCCCCCCCCCC-EECCccCcccCCHHHHHHHHHHhCC
Confidence            47888988776 9999999999999999999999875

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.99  E-value=2.1e-10  Score=53.10  Aligned_cols=36  Identities=19%  Similarity=0.536  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|.+|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ely_A            2 SSGSSGTGEKP-FKCVECGKGFSRRSALNVHHKLHTG   37 (46)
T ss_dssp             CCCCCCCCCCS-BCCSSSCCCBSSTTHHHHHHHHHSC
T ss_pred             CCCCCCCCCCC-cccCccCcccCCHHHHHHHHHHcCC
Confidence            47888988776 9999999999999999999999875

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.4e-10  Score=53.67  Aligned_cols=36  Identities=28%  Similarity=0.492  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|...+.|.+|+++|+|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2emp_A            2 SSGSSGTGVKP-YMCNECGKAFSVYSSLTTHQVIHTG   37 (46)
T ss_dssp             CCCSCSSCCCS-EECSSSCCEESCHHHHHHHHHHHHC
T ss_pred             CcccccCCCcC-eECCCCCchhCCHHHHHHHHHHcCC
Confidence            57888999776 9999999999999999999999875

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.2e-10  Score=52.94  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eme_A            2 SSGSSGSGEKP-YVCDYCGKAFGLSAELVRHQRIHTG   37 (46)
T ss_dssp             CCCCTTCCCCS-EECSSSCCEESSHHHHHHHHGGGCC
T ss_pred             CCCCCCCCCCC-eECCCCChhhCCHHHHHHHHHhcCC
Confidence            57888999776 9999999999999999999999875

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.99  E-value=1.4e-10  Score=53.63  Aligned_cols=36  Identities=28%  Similarity=0.465  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|...+.|..|+++|+|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2el4_A            2 SSGSSGTGVKP-YGCSQCAKTFSLKSQLIVHQRSHTG   37 (46)
T ss_dssp             CCCCCSCCCCS-EECSSSSCEESSHHHHHHHGGGSSS
T ss_pred             ccccCCCCCCc-eECCCCCchhCCHHHHHHHHHHhCC
Confidence            57888988776 9999999999999999999999875

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.6e-10  Score=53.44  Aligned_cols=36  Identities=19%  Similarity=0.369  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|...+.|..|+++|+|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2epw_A            2 SSGSSGTGEKP-CKCTECGKAFCWKSQLIMHQRTHVD   37 (46)
T ss_dssp             CCCCCCCCCCS-EECSSSCCEESSSHHHHHHHHHCCS
T ss_pred             cCcccCCCCCC-eeCCCCCCccCCHHHHHHHHHHhCC
Confidence            57888988776 9999999999999999999999875

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.99  E-value=2e-10  Score=52.01  Aligned_cols=35  Identities=26%  Similarity=0.475  Sum_probs=31.5

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |+++|.+.++ |.|.+|++.|...+.|..|+++|++
T Consensus         2 H~~~H~~~~~-~~C~~C~k~f~~~~~l~~H~~~H~~   36 (42)
T 2epc_A            2 SSGSSGGETP-YLCGQCGKSFTQRGSLAVHQRSCSQ   36 (42)
T ss_dssp             CCSCCCSSCC-EECSSSCCEESSHHHHHHHHHHTTC
T ss_pred             CCccCCCCCC-eECCCCCcccCCHHHHHHHhhhcCC
Confidence            6678888776 9999999999999999999999875

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.6e-10  Score=53.49  Aligned_cols=36  Identities=22%  Similarity=0.498  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|...+.|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ene_A            2 SSGSSGTGEKP-YKCNECGKVFRHNSYLSRHQRIHTG   37 (46)
T ss_dssp             CCCSSCCCSSS-EECSSSCCEESSHHHHHHHHTTTCC
T ss_pred             CcccCCCCCCC-eECCCCCchhCChHHHHHHHhhcCC
Confidence            57888998776 9999999999999999999999875

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.9e-10  Score=53.17  Aligned_cols=36  Identities=25%  Similarity=0.564  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|...+.|..|+++|+|
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ep2_A            2 SSGSSGTGEKP-YECSICGKSFTKKSQLHVHQQIHTG   37 (46)
T ss_dssp             CSSSCSSCCCS-EECSSSCCEESSHHHHHHHHHTTSS
T ss_pred             CCCCCCCCCcC-cCCCCCCcccCCHHHHHHHHHHhCC
Confidence            57888988776 9999999999999999999999875

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2e-10  Score=53.13  Aligned_cols=36  Identities=22%  Similarity=0.504  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|...+.|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2eq0_A            2 SSGSSGTGEKP-YKCHECGKVFRRNSHLARHQLIHTG   37 (46)
T ss_dssp             CCCCCTTCCCC-EECTTTCCEESSHHHHHHHHTTTCC
T ss_pred             CCCcCCCCCCC-eECCCCCchhCCHHHHHHHHHHcCC
Confidence            47788988777 9999999999999999999999875

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.4e-10  Score=52.88  Aligned_cols=36  Identities=19%  Similarity=0.471  Sum_probs=32.4

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~h~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2en9_A            2 SSGSSGAGKKL-FKCNECKKTFTQSSSLTVHQRIHTG   37 (46)
T ss_dssp             CCCSSCCSSCC-CBCTTTCCBCSSHHHHHHHHHHHTS
T ss_pred             CCCCCCCCCCC-EECCccCcccCCHHHHHHHHHHcCC
Confidence            47788988776 9999999999999999999999875

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.3e-10  Score=52.90  Aligned_cols=36  Identities=22%  Similarity=0.467  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2epz_A            2 SSGSSGTGEKP-FDCIDCGKAFSDHIGLNQHRRIHTG   37 (46)
T ss_dssp             CCCSSCCCCCS-BCCTTTCCCBSSHHHHHHHHTTTTT
T ss_pred             CCCCCcCCCCC-eECCCCCceeCCHHHHHHHHHHhCC
Confidence            47888988776 9999999999999999999999875

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.8e-10  Score=53.25  Aligned_cols=36  Identities=25%  Similarity=0.554  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|...+.|..|+++|+|
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytk_A            2 SSGSSGSGEKP-YKCNECGKVFTQNSHLTNHWRIHTG   37 (46)
T ss_dssp             CCCCCSSSSCS-EECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CCcccCCCCCC-EeCCcCCCccCCHHHHHHHHHHHCC
Confidence            57888988776 9999999999999999999999875

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2e-10  Score=52.63  Aligned_cols=36  Identities=14%  Similarity=0.325  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2emb_A            2 SSGSSGHTRKR-YECSKCQATFNLRKHLIQHQKTHAA   37 (44)
T ss_dssp             CCCSCCCCCSS-EECTTTCCEESCHHHHHHHGGGGCC
T ss_pred             CcccccCCCCC-eECCCCCCccCCHHHHHHHHHHcCC
Confidence            57888988776 9999999999999999999999875

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2e-10  Score=53.12  Aligned_cols=36  Identities=25%  Similarity=0.464  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2em6_A            2 SSGSSGMGEKC-YKCDVCGKEFSQSSHLQTHQRVHTG   37 (46)
T ss_dssp             CCCSCCCCCCC-CBCSSSCCBCSSHHHHHHHHTTTSS
T ss_pred             CCccccCCCCC-eECCCCCcccCCHHHHHHHHHHcCC
Confidence            47788988776 9999999999999999999999875

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.9e-10  Score=53.18  Aligned_cols=36  Identities=22%  Similarity=0.521  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eor_A            2 SSGSSGTGEKP-YNCEECGKAFIHDSQLQEHQRIHTG   37 (46)
T ss_dssp             CSSSSSSCCCS-EECTTTCCEESSHHHHHHHHHHHHS
T ss_pred             CCCcCcCCCcC-ccCCCCCCCcCCHHHHHHHHHhcCC
Confidence            47888988776 9999999999999999999999874

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.8e-10  Score=53.23  Aligned_cols=36  Identities=19%  Similarity=0.495  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytf_A            2 SSGSSGTGEKP-FECSECQKAFNTKSNLIVHQRTHTG   37 (46)
T ss_dssp             CCCCSSCCCCS-EECSSSCCEESSHHHHHHHHHTSCS
T ss_pred             CCCCCCCCCCC-cCCCCCCcccCCHHHHHHHHHHhCC
Confidence            47788988776 9999999999999999999999875

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2e-10  Score=53.09  Aligned_cols=36  Identities=22%  Similarity=0.540  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytd_A            2 SSGSSGSGEKP-YKCSECGKAFHRHTHLNEHRRIHTG   37 (46)
T ss_dssp             CCCCCSCCCCS-EECSSSCCEESSHHHHHHHHHHHTC
T ss_pred             CCccccCCCcC-eECCCCCCeeCChHHHHHHHHHcCC
Confidence            47888988776 9999999999999999999999875

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.1e-10  Score=53.42  Aligned_cols=36  Identities=25%  Similarity=0.488  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|...+.|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2eoj_A            2 SSGSSGTGENP-YECCECGKVFSRKDQLVSHQKTHSG   37 (44)
T ss_dssp             CSCCSSSSCCS-CEETTTTEECSSHHHHHHHHTTSSS
T ss_pred             CCccccCCCcC-eeCCCCCCccCCHHHHHHHHHHcCC
Confidence            47888999776 9999999999999999999999875

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.4e-10  Score=52.60  Aligned_cols=35  Identities=31%  Similarity=0.625  Sum_probs=31.4

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   36 (42)
T 2en2_A            2 SSGSSGGEKP-YKCETCGARFVQVAHLRAHVLIHTG   36 (42)
T ss_dssp             CCCCCCSSCS-EECTTTCCEESSHHHHHHHTHHHHS
T ss_pred             CCcccCCCCC-EeCCCcChhhCCHHHHHHHHHHcCC
Confidence            6778888776 9999999999999999999999864

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.6e-10  Score=53.41  Aligned_cols=36  Identities=25%  Similarity=0.544  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|...+.|.+|+++|++
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2eoe_A            2 SSGSSGTGEKP-YKCNECGKVFTQNSHLANHQRIHTG   37 (46)
T ss_dssp             CCSSCCCCCCS-SEETTTTEECSSHHHHHHHHGGGSC
T ss_pred             CCCCCCCCCCC-eECCCcChhhCCHHHHHHHHHHcCC
Confidence            47888988776 9999999999999999999999875

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.5e-10  Score=52.80  Aligned_cols=36  Identities=17%  Similarity=0.432  Sum_probs=32.4

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~h~~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2elz_A            2 SSGSSGSVEKP-YKCEDCGKGYNRRLNLDMHQRVHMG   37 (46)
T ss_dssp             CCCSCCCCCSS-CBCSSSCCBCSSHHHHHHHGGGGGS
T ss_pred             CCCCCCCCCCC-eeCcccCchhCCHHHHHHHHHhcCC
Confidence            47788988777 9999999999999999999999875

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.8e-10  Score=53.22  Aligned_cols=36  Identities=14%  Similarity=0.329  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2en8_A            2 SSGSSGSGEKS-HTCDECGKNFCYISALRIHQRVHMG   37 (46)
T ss_dssp             CCCCCCCCCSS-EECTTTCCEESSHHHHHHHHTTTCC
T ss_pred             CccccCCCCCC-eECCCcCcccCCHHHHHHHHHHhCC
Confidence            57888988777 9999999999999999999999875

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.8e-10  Score=53.25  Aligned_cols=36  Identities=28%  Similarity=0.519  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|...+.|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2yts_A            2 SSGSSGTGEKP-YICNECGKSFIQKSHLNRHRRIHTG   37 (46)
T ss_dssp             CCSCCCCSCCS-EECSSSCCEESSHHHHHHHGGGTSS
T ss_pred             CCCCCCCCCcC-EECCCCChhhCChHHHHHHHHhcCC
Confidence            47888988776 9999999999999999999999875

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.7e-10  Score=53.29  Aligned_cols=36  Identities=31%  Similarity=0.588  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2yrj_A            2 SSGSSGTGEKP-YRCGECGKAFAQKANLTQHQRIHTG   37 (46)
T ss_dssp             CCCCCCCCCCC-EECSSSCCEESSHHHHHHHHTTTSS
T ss_pred             CCccCCCCCCC-eECCCCCCccCCHHHHHHHHHHcCC
Confidence            47888988776 9999999999999999999999875

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=1.8e-10  Score=53.34  Aligned_cols=36  Identities=19%  Similarity=0.328  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|+++|++.++ |.|.+|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2em5_A            2 SSGSSGSSTKS-HQCHECGRGFTLKSHLNQHQRIHTG   37 (46)
T ss_dssp             CCCCCCCCSCS-EECSSSCCEESSHHHHHHHHTTTSC
T ss_pred             CCcCCCCCCCC-eECCcCCCccCCHHHHHHHHHHhCC
Confidence            57888988776 9999999999999999999999875

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.97  E-value=2.2e-10  Score=52.94  Aligned_cols=36  Identities=19%  Similarity=0.451  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2em9_A            2 SSGSSGTGEKP-YNCKECGKSFRWASCLLKHQRVHSG   37 (46)
T ss_dssp             CSCCSCCCCCS-EECSSSCCEESSHHHHHHHGGGGTS
T ss_pred             CCCCCCCCCcC-eECCccccccCChHHHHHHHHHhCC
Confidence            47888998776 9999999999999999999999875

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.7e-10  Score=52.68  Aligned_cols=36  Identities=28%  Similarity=0.528  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|...+.|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytq_A            2 SSGSSGAGEKP-YGCSECGKAFSSKSYLIIHMRTHSG   37 (46)
T ss_dssp             CCSSCSSCCCS-CBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             CCCcCcCCCCC-cCCCccChhhCChHHHHHHHHHhCC
Confidence            47788988777 9999999999999999999999875

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.4e-10  Score=53.61  Aligned_cols=36  Identities=22%  Similarity=0.523  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|.+|++.|...+.|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2yu8_A            2 SSGSSGTGEKP-YKCNECGKVFTQNSHLARHRRVHTG   37 (46)
T ss_dssp             CCCCCCCCCSS-EECSSSCCEESSSHHHHHHTHHHHS
T ss_pred             CcCcCCCCCCC-eECCcCCchhCCHHHHHHHHHhcCC
Confidence            47888988777 9999999999999999999999875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=5.2e-10  Score=49.28  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=24.6

Q ss_pred             cccCCCceeCCcccccccch-hHHHhhhhhhhCC
Q psy12010         39 RQYNSGMFPCDVCGKKYKYK-WGLSRHKRDECGQ   71 (99)
Q Consensus        39 ~~~~~k~~~C~~c~~~f~~~-~~l~~h~~~h~~~   71 (99)
                      .|+++++|+|+.|++.|... ..|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            45677778888888888777 7777787777663

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.2e-10  Score=53.05  Aligned_cols=36  Identities=19%  Similarity=0.462  Sum_probs=32.1

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|.....|.+|+++|++
T Consensus         2 ~h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eon_A            2 SSGSSGTGEKP-YKCQVCGKAFRVSSHLVQHHSVHSG   37 (46)
T ss_dssp             CCSSSCSSCCS-CBCSSSCCBCSSHHHHHHHTTTTTS
T ss_pred             CCCCCCCCCcc-cCCCCCCcccCcHHHHHHHHHhcCC
Confidence            36788888776 9999999999999999999999875

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=4.7e-10  Score=49.11  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=23.7

Q ss_pred             cccCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         39 RQYNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        39 ~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      .|+++++|+|..|++.|.....|..|+++|++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            45667777777777777777777777777765

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=6.1e-10  Score=48.65  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=24.7

Q ss_pred             cccCCCceeCCcccccccchhHHHhhhhhhhCC
Q psy12010         39 RQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        39 ~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      .|.++++|.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            456677788888888888877788887777663

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.7e-10  Score=52.68  Aligned_cols=36  Identities=22%  Similarity=0.475  Sum_probs=32.4

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2em7_A            2 SSGSSGTGEKP-YKCEECGKGFICRRDLYTHHMVHTG   37 (46)
T ss_dssp             CCCCSSSCCCS-EECSSSCCEESCHHHHHHHGGGGTT
T ss_pred             CCCCCCCCCcC-ccCCCccchhCCHHHHHHHHHHhCC
Confidence            47788988776 9999999999999999999999875

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=3.4e-10  Score=52.33  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|...+.|..|+++|++
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2yso_A            2 SSGSSGSREKS-HQCRECGEIFFQYVSLIEHQVLHMG   37 (46)
T ss_dssp             CCSCCSSCCCC-EECTTTCCEESSHHHHHHHHHHHSC
T ss_pred             CcccccCCCCC-EEccccChhhCCHHHHHHHHHHhCC
Confidence            47788988776 9999999999999999999999875

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.9e-10  Score=52.60  Aligned_cols=35  Identities=26%  Similarity=0.567  Sum_probs=31.6

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |+++|.+.++ |.|.+|++.|.....|..|+++|++
T Consensus         3 h~~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2enh_A            3 SGSSGTGEKP-YECDVCRKAFSHHASLTQHQRVHSG   37 (46)
T ss_dssp             CCCCCCCSSS-CBCTTTCCBCSSSHHHHHHGGGSCC
T ss_pred             CCCCcCCCCC-cCCCCcCchhCCHHHHHHHHHHhCC
Confidence            6778888776 9999999999999999999999875

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.96  E-value=1.3e-10  Score=62.26  Aligned_cols=54  Identities=19%  Similarity=0.225  Sum_probs=48.2

Q ss_pred             CCCCCCcccc-CCcccccCccccccCCCceeCCcccccccchhHHHhh-hhhhhCCCC
Q psy12010         18 YSFNWPEVHL-NESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRH-KRDECGQEP   73 (99)
Q Consensus        18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h-~~~h~~~~~   73 (99)
                      +.|..|...| .....+..|...| ++++|.|.+|++.|.....|..| +++|++ ++
T Consensus        35 ~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~-~p   90 (96)
T 2ctd_A           35 VSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNS-LP   90 (96)
T ss_dssp             EECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCC-CS
T ss_pred             cCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCC-CC
Confidence            5688888888 7888888889999 99999999999999999999999 889976 54

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3e-10  Score=52.53  Aligned_cols=36  Identities=22%  Similarity=0.552  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2em2_A            2 SSGSSGSGEKP-FKCKECGKAFRQNIHLASHLRIHTG   37 (46)
T ss_dssp             CCCCSCCCCCS-EECSSSCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCCC-EECCcCCchhCCHHHHHHHHHHhCC
Confidence            47788988776 9999999999999999999999875

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.3e-10  Score=52.92  Aligned_cols=36  Identities=22%  Similarity=0.603  Sum_probs=32.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2en1_A            2 SSGSSGSGEKP-FKCEECGKRFTQNSQLHSHQRVHTG   37 (46)
T ss_dssp             CSTTCCCCCCS-EEETTTTEEESSHHHHHHHGGGGSC
T ss_pred             CcccCCCCCCC-eeCCCCCcccCCHHHHHHHHHHcCC
Confidence            57888999776 9999999999999999999999875

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.1e-10  Score=53.07  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=32.3

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eoy_A            2 SSGSSGQKEKC-FKCNKCEKTFSCSKYLTQHERIHTR   37 (46)
T ss_dssp             CCCCCCCCSCC-EECSSSCCEESSSHHHHHHHTTCCS
T ss_pred             CCccccCCCCC-EECcCCCCcCCCHHHHHHHHHHcCC
Confidence            47788888776 9999999999999999999999874

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=5.5e-11  Score=63.74  Aligned_cols=60  Identities=20%  Similarity=0.165  Sum_probs=52.6

Q ss_pred             CCCCCCCCccccC-CcccccCccccccC-CCceeCCcccccccchhHHHhhhhhhhCCCCccc
Q psy12010         16 PEYSFNWPEVHLN-ESDFINWPTVRQYN-SGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQ   76 (99)
Q Consensus        16 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~   76 (99)
                      ..+.|..|...|. ....+..|...|.+ +++|.|.+|++.|.....|..|++.|++.++ +.
T Consensus        23 ~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp-~~   84 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP-SD   84 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS-SC
T ss_pred             CCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCC-CC
Confidence            4467888888888 88888888888988 9999999999999999999999999998766 44

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.95  E-value=3e-10  Score=52.53  Aligned_cols=36  Identities=28%  Similarity=0.504  Sum_probs=32.4

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|.....|..|+++|++
T Consensus         2 ~h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2el6_A            2 SSGSSGAGVNP-YKCSQCEKSFSGKLRLLVHQRMHTR   37 (46)
T ss_dssp             CSCCSSCCCCS-EECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CCCCCCCCCCC-eECCCCCcccCCHHHHHHHHHHcCC
Confidence            46788988777 9999999999999999999999875

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.7e-10  Score=53.37  Aligned_cols=36  Identities=17%  Similarity=0.528  Sum_probs=32.3

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|.....|..|+++|++
T Consensus         2 ~h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2emz_A            2 SSGSSGSGERP-FKCNECGKGFGRRSHLAGHLRLHSR   37 (46)
T ss_dssp             CCCSCSSCCCS-CCCSSSCCCCSSHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCC-eECCCCCcccCCHHHHHHHHHHhCC
Confidence            47888988776 9999999999999999999999863

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.95  E-value=1.8e-10  Score=56.13  Aligned_cols=54  Identities=15%  Similarity=0.329  Sum_probs=47.6

Q ss_pred             CCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhh-hhhhCC
Q psy12010         18 YSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHK-RDECGQ   71 (99)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~-~~h~~~   71 (99)
                      +.|..|...|.....+..|...|.++++|.|+.|++.|.....|..|+ +.|.+.
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            567788888888888888899999999999999999999999999996 677663

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.5e-10  Score=53.53  Aligned_cols=36  Identities=22%  Similarity=0.485  Sum_probs=32.2

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|.+|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2en3_A            2 SSGSSGTGEKP-FQCKECGMNFSWSCSLFKHLRSHER   37 (46)
T ss_dssp             CCCCCSCCCCS-EECSSSCCEESSSHHHHHHHHHHHH
T ss_pred             ccccccCCCCC-eeCcccChhhCCHHHHHHHHHHhCC
Confidence            57888988776 9999999999999999999998863

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.95  E-value=6.8e-10  Score=47.86  Aligned_cols=32  Identities=22%  Similarity=0.205  Sum_probs=27.3

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCccc
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQ   76 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~   76 (99)
                      +||.|++|++.|.....|..|+++|+++++ |.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGE-ER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCC-CC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCC-CC
Confidence            578999999999999999999999988665 64

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=2.9e-10  Score=50.07  Aligned_cols=33  Identities=24%  Similarity=0.571  Sum_probs=29.5

Q ss_pred             hhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         66 RDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        66 ~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ++|.+.++ |.|..|++.|...+.|..|+++|++
T Consensus         2 ~~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~h~~   34 (37)
T 2elo_A            2 SSGSSGRS-YSCPVCEKSFSEDRLIKSHIKTNHP   34 (37)
T ss_dssp             CCCCCCCC-CEETTTTEECSSHHHHHHHHHHHCS
T ss_pred             CCCCCCCC-cCCCCCCCccCCHHHHHHHHHHHcC
Confidence            46777676 9999999999999999999999875

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=5.6e-10  Score=48.86  Aligned_cols=32  Identities=19%  Similarity=0.429  Sum_probs=22.7

Q ss_pred             cccCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         39 RQYNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        39 ~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      .|.++++|+|..|++.|.....|..|+++|++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            35566777777777777777777777777765

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.1e-10  Score=52.51  Aligned_cols=36  Identities=17%  Similarity=0.471  Sum_probs=32.1

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|...+.|.+|+++|++
T Consensus         2 ~h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytm_A            2 SSGSSGTGEKP-YKCMECGKAFGDNSSCTQHQRLHTG   37 (46)
T ss_dssp             CSCCCCSSCCS-SSBTTTTBCCSSHHHHHHHHHHHHS
T ss_pred             CCCcCCCCCCC-cCCCCCCchhCCHHHHHHHHHHcCC
Confidence            36778888776 9999999999999999999999874

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=3.7e-10  Score=52.19  Aligned_cols=36  Identities=14%  Similarity=0.374  Sum_probs=32.4

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|...+.|..|+++|++
T Consensus         2 ~h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2enc_A            2 SSGSSGSGEKP-FKCEECGKGFYTNSQCYSHQRSHSG   37 (46)
T ss_dssp             CCSSCCCCCCS-EECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCC-cCCCCCCCcCCChHHHHHHHHHhCC
Confidence            47788888776 9999999999999999999999875

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2e-10  Score=53.04  Aligned_cols=36  Identities=33%  Similarity=0.621  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eq3_A            2 SSGSSGTGEKP-YECNQCGKAFSVRSSLTTHQAIHTG   37 (46)
T ss_dssp             CCCCSSCCCCS-SEETTTTEECSSHHHHHHHHTTSCC
T ss_pred             CcccCCCCCCC-eECCCCChhhCCHHHHHHHHHHhCC
Confidence            47888988776 9999999999999999999999875

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.8e-10  Score=53.28  Aligned_cols=36  Identities=19%  Similarity=0.525  Sum_probs=32.5

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|..|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytg_A            2 SSGSSGTGEKP-FKCGECGKSYNQRVHLTQHQRVHTG   37 (46)
T ss_dssp             CCCCCCSSCCS-EECTTTCCEESSSHHHHTTGGGGSS
T ss_pred             CCCCCCCCCCC-eECCCCCcccCCHHHHHHHHHHcCC
Confidence            57888988776 9999999999999999999999875

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=5e-10  Score=51.28  Aligned_cols=35  Identities=14%  Similarity=0.284  Sum_probs=31.5

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |+++|.+.++ |.|.+|++.|.....|..|+++|++
T Consensus         3 h~~~h~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2eou_A            3 SGSSGAAKTT-SECQECGKIFRHSSLLIEHQALHAG   37 (44)
T ss_dssp             CSCSCSSSCC-CCCTTTCCCCSSHHHHHHHHHHHTT
T ss_pred             CCCCCCCCcC-eECCCCCcccCCHHHHHHHHHHHCC
Confidence            6778888776 9999999999999999999999875

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.5e-10  Score=52.75  Aligned_cols=36  Identities=28%  Similarity=0.532  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|++.++ |.|.+|++.|.....|..|+++|++
T Consensus         2 ~h~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2en6_A            2 SSGSSGSGEKP-YGCNECGKTFSQKSILSAHQRTHTG   37 (46)
T ss_dssp             CCSCCCCSSCC-EEETTTTEEESSHHHHHHHHHHHSS
T ss_pred             CCCCccCCCcC-eECCCCCcccCchHHHHHHHHHcCC
Confidence            47788998777 9999999999999999999999875

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.6e-10  Score=53.01  Aligned_cols=36  Identities=17%  Similarity=0.335  Sum_probs=32.6

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|.....|..|+++|++
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (44)
T 2eox_A            2 SSGSSGTDSKS-YNCNECGKAFTRIFHLTRHQKIHTR   37 (44)
T ss_dssp             CCCCCCCCCCC-EEETTTTEEESSSHHHHTTHHHHCC
T ss_pred             CCCcCCCCCCC-eECcccCcccCCHHHHHHHHHHhCC
Confidence            47888988777 9999999999999999999999875

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.92  E-value=1.1e-09  Score=48.51  Aligned_cols=35  Identities=20%  Similarity=0.372  Sum_probs=29.8

Q ss_pred             ccCCCceeCC--cccccccchhHHHhhhhhhhCCCCcc
Q psy12010         40 QYNSGMFPCD--VCGKKYKYKWGLSRHKRDECGQEPKY   75 (99)
Q Consensus        40 ~~~~k~~~C~--~c~~~f~~~~~l~~h~~~h~~~~~~~   75 (99)
                      |+++++|.|.  .|++.|.....|..|+++|++.++ |
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~-~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK-F   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTT-T
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCC-C
Confidence            4678899999  599999999999999999988665 5

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=1.1e-10  Score=58.88  Aligned_cols=55  Identities=11%  Similarity=0.112  Sum_probs=45.4

Q ss_pred             CCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         18 YSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      +.|..|+..|.....+..       +++|.|+.|++.|.....|..|++.|.+.++ |.|.+|
T Consensus        19 ~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~-~~C~~C   73 (73)
T 2ctu_A           19 QKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKT-SGPSSG   73 (73)
T ss_dssp             EECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCC-SSCCCC
T ss_pred             eeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCC-CCCCCC
Confidence            567777666665554444       6899999999999999999999999999776 999887

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=1.1e-09  Score=47.85  Aligned_cols=31  Identities=35%  Similarity=0.521  Sum_probs=21.5

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      |.++++|.|++|++.|.....|..|+++|++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            4566677777777777777777777777665

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.8e-10  Score=51.93  Aligned_cols=36  Identities=22%  Similarity=0.457  Sum_probs=32.2

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHH-hhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMA-IKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~-~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|..|++ +|++
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~~H~~   38 (47)
T 2epx_A            2 SSGSSGTGKKP-YECIECGKAFIQNTSLIRHWRYYHTG   38 (47)
T ss_dssp             CCCCCCCCCCS-BCCSSSCCCBSSHHHHHHHHTTTTTT
T ss_pred             ccccccCCCCC-EECCccCchhCChHHHHHHhHhhcCC
Confidence            47888988776 999999999999999999999 8864

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.2e-10  Score=52.05  Aligned_cols=36  Identities=19%  Similarity=0.502  Sum_probs=32.2

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|..|++.|.....|.+|+++|++
T Consensus         2 ~h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2em8_A            2 SSGSSGSGEKP-YKCVECGKGYKRRLDLDFHQRVHTG   37 (46)
T ss_dssp             CCCCCCCSCCS-EECSSSCCEESSHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCC-eECcccCchhCCHHHHHHHHHHHcC
Confidence            46788888776 9999999999999999999999875

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.8e-10  Score=52.60  Aligned_cols=36  Identities=22%  Similarity=0.517  Sum_probs=32.3

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|+++|.+.++ |.|.+|++.|.....|.+|+++|++
T Consensus         2 ~H~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ysp_A            2 SSGSSGTGEKP-YKCEKCGKGYNSKFNLDMHQKVHTG   37 (46)
T ss_dssp             CCCCCCSSCCS-EEETTTTEEESCHHHHHHHHTTSCS
T ss_pred             CCCcCCCCCCC-eECCCCCCccCCHHHHHHHHHhhCC
Confidence            47788888776 9999999999999999999999875

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.91  E-value=5.6e-10  Score=49.42  Aligned_cols=32  Identities=25%  Similarity=0.555  Sum_probs=27.3

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCC
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQ   79 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~   79 (99)
                      +.+++||+|+.|++.|.+.++|..|+       + |.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------p-y~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------A-YYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------H-HTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------C-eECcC
Confidence            56889999999999999999999998       3 77754

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=8.4e-10  Score=48.72  Aligned_cols=32  Identities=19%  Similarity=0.288  Sum_probs=21.8

Q ss_pred             cccCCCceeCCcccccccchhHHHhh-hhhhhC
Q psy12010         39 RQYNSGMFPCDVCGKKYKYKWGLSRH-KRDECG   70 (99)
Q Consensus        39 ~~~~~k~~~C~~c~~~f~~~~~l~~h-~~~h~~   70 (99)
                      .|++++||+|+.|++.|.....|..| ++.|++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            45666777777777777777777777 666654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.1e-09  Score=49.02  Aligned_cols=31  Identities=23%  Similarity=0.589  Sum_probs=27.3

Q ss_pred             hhCCCCcccCCC--CCccccChhHHHHHHHhhcC
Q psy12010         68 ECGQEPKYQCPQ--CPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        68 h~~~~~~~~c~~--C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +.++++ |+|..  |+++|...+.|.+|+++|+|
T Consensus         4 ~~gekp-~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            4 GSSGIL-LKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SSCCCC-EECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCC-CCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            456565 99986  99999999999999999986

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=4.6e-10  Score=49.60  Aligned_cols=33  Identities=27%  Similarity=0.526  Sum_probs=28.9

Q ss_pred             hhhhCCCCcccCCCCCccccChhHHHHH-HHhhcC
Q psy12010         66 RDECGQEPKYQCPQCPYRASQKATLKTH-MAIKHS   99 (99)
Q Consensus        66 ~~h~~~~~~~~c~~C~~~f~~~~~l~~H-~~~~~~   99 (99)
                      ++|.+.++ |+|..|++.|...+.|..| +++|++
T Consensus         2 ~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            2 SSGSSGHL-YYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CSSSSSCE-EECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CccCCCcC-eECCCCCcccCCHHHHHHHHHHHccC
Confidence            46777666 9999999999999999999 888875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1.4e-09  Score=47.52  Aligned_cols=31  Identities=29%  Similarity=0.627  Sum_probs=22.0

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +.++++|.|+.|++.|.....|..|+++|++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            4566777777777777777777777777765

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.89  E-value=7.5e-10  Score=51.83  Aligned_cols=35  Identities=34%  Similarity=0.669  Sum_probs=28.7

Q ss_pred             cccCCCceeCCcccccccchhHHHhhhh-hhhCCCC
Q psy12010         39 RQYNSGMFPCDVCGKKYKYKWGLSRHKR-DECGQEP   73 (99)
Q Consensus        39 ~~~~~k~~~C~~c~~~f~~~~~l~~h~~-~h~~~~~   73 (99)
                      +|+++++|.|.+|++.|.....|..|++ +|.++..
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            3678899999999999999999999999 8988654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.88  E-value=1.3e-09  Score=47.22  Aligned_cols=31  Identities=23%  Similarity=0.496  Sum_probs=27.6

Q ss_pred             hhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         68 ECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        68 h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |.+.++ |.|..|++.|...+.|..|+++|++
T Consensus         2 h~~~k~-~~C~~C~k~f~~~~~L~~H~~~h~~   32 (35)
T 2elx_A            2 SSGSSG-YVCALCLKKFVSSIRLRSHIREVHG   32 (35)
T ss_dssp             CCCCCS-EECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCCCCC-eECCCCcchhCCHHHHHHHHHHHcC
Confidence            556566 9999999999999999999999875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.87  E-value=1.5e-09  Score=47.12  Aligned_cols=31  Identities=23%  Similarity=0.548  Sum_probs=27.8

Q ss_pred             hhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         68 ECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        68 h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |.+.++ |.|.+|++.|...+.|.+|+++|++
T Consensus         2 H~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~   32 (35)
T 1srk_A            2 SSGKRP-FVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSC-EECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCcC-eeCCCCCcccCCHHHHHHHHHHcCC
Confidence            567666 9999999999999999999999875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.86  E-value=3.2e-10  Score=57.31  Aligned_cols=56  Identities=16%  Similarity=0.250  Sum_probs=47.1

Q ss_pred             CCCCCCCC--CCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhhh
Q psy12010         14 LFPEYSFN--WPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        14 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      ....+.|.  .|+..|.....+..|...|.++++|.|++|++.|.....|..|+++|+
T Consensus        16 ~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            33446675  377778888888888889999999999999999999999999998874

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.85  E-value=4.3e-10  Score=55.77  Aligned_cols=54  Identities=17%  Similarity=0.205  Sum_probs=46.5

Q ss_pred             CCCCCCCccccCCcccccCcccc-c-cCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         17 EYSFNWPEVHLNESDFINWPTVR-Q-YNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      .+.|..|+..|.....+..+... | .++++|.|+.|++.|.....|..|++.+++
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            35677888888888888888776 7 589999999999999999999999998875

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.84  E-value=4.1e-09  Score=52.72  Aligned_cols=41  Identities=22%  Similarity=0.413  Sum_probs=34.2

Q ss_pred             ccccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCC
Q psy12010         38 VRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQC   80 (99)
Q Consensus        38 ~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C   80 (99)
                      ..+.+++||+|..|++.|.....|..|+++|++..  ..+.++
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~--~~~~~~   46 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS--LQLGYI   46 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS--CCCCSC
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc--cccccc
Confidence            44678899999999999999999999999999854  344444

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1.6e-09  Score=50.06  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=30.7

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ++++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         3 ~~~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2eom_A            3 SGSSGHGERG-HRCSDCGKFFLQASNFIQHRRIHTG   37 (46)
T ss_dssp             CCCCCCCCSS-CCCSSSCCCCSSHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCC-cCCCCCCCeeCChHHHHHHHHHhCC
Confidence            3567888776 9999999999999999999999875

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=2.1e-09  Score=46.95  Aligned_cols=32  Identities=16%  Similarity=0.332  Sum_probs=28.1

Q ss_pred             hhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         67 DECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        67 ~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|.+.++ |.|.+|++.|...+.|..|+++|++
T Consensus         3 ~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            3 SGSSGLL-YDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             CSCCCCC-EECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCCC-eECCCCCCccCCHHHHHHHHHHhcC
Confidence            4566666 9999999999999999999999875

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.81  E-value=1.9e-09  Score=54.99  Aligned_cols=57  Identities=16%  Similarity=0.248  Sum_probs=47.5

Q ss_pred             CCCCCCCccccCCcccccCccc-cccCC-CceeCCcccccccchhHHHhhhhhhhCCCC
Q psy12010         17 EYSFNWPEVHLNESDFINWPTV-RQYNS-GMFPCDVCGKKYKYKWGLSRHKRDECGQEP   73 (99)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~   73 (99)
                      .+.|..|...|.....+..|.. .|.++ ++|.|++|++.|.....|..|++.+.+...
T Consensus        15 ~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A           15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            3678888888888777877775 67764 899999999999999999999998776554

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2e-09  Score=47.29  Aligned_cols=32  Identities=16%  Similarity=0.451  Sum_probs=28.4

Q ss_pred             hhhCCCCcccCCCCCccccCh-hHHHHHHHhhcC
Q psy12010         67 DECGQEPKYQCPQCPYRASQK-ATLKTHMAIKHS   99 (99)
Q Consensus        67 ~h~~~~~~~~c~~C~~~f~~~-~~l~~H~~~~~~   99 (99)
                      +|.+.++ |.|..|++.|... +.|..|+++|++
T Consensus         3 ~h~~~k~-~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            3 SGSSGRA-MKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             SCCCCCC-EECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCC-eECCCCChhhccCHHHHHHHHHhcCC
Confidence            5677666 9999999999999 999999999875

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.81  E-value=3e-09  Score=49.71  Aligned_cols=32  Identities=28%  Similarity=0.492  Sum_probs=27.8

Q ss_pred             hhhCCCCcccCCCCCccccChhHHHHHHH-hhcC
Q psy12010         67 DECGQEPKYQCPQCPYRASQKATLKTHMA-IKHS   99 (99)
Q Consensus        67 ~h~~~~~~~~c~~C~~~f~~~~~l~~H~~-~~~~   99 (99)
                      +|++.++ |.|.+|++.|.....|..|++ +|+|
T Consensus         1 ~Ht~~kp-~~C~~C~k~F~~~~~L~~H~~~~H~~   33 (48)
T 3iuf_A            1 GEDRDKP-YACDICGKRYKNRPGLSYHYAHSHLA   33 (48)
T ss_dssp             -CTTTSC-EECTTTCCEESSHHHHHHHHHHSSCC
T ss_pred             CCCCCcC-EECCCcCcccCCHHHHHHHhhhhcCC
Confidence            3677676 999999999999999999999 8865

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2.6e-09  Score=46.65  Aligned_cols=32  Identities=28%  Similarity=0.686  Sum_probs=28.2

Q ss_pred             hhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         67 DECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        67 ~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|.+.++ |+|.+|++.|...+.|..|+++|++
T Consensus         3 ~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            3 SGSSGKP-FKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SSCCCCS-EECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCCC-ccCCCCCchhCCHHHHHHHHHHhcc
Confidence            4667666 9999999999999999999999875

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.80  E-value=4.3e-09  Score=46.35  Aligned_cols=32  Identities=28%  Similarity=0.431  Sum_probs=23.0

Q ss_pred             ccCCCceeCCc--ccccccchhHHHhhhhhhhCC
Q psy12010         40 QYNSGMFPCDV--CGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        40 ~~~~k~~~C~~--c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      ++++++|.|.+  |++.|.....|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            45677777773  777777777777777777663

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2e-09  Score=49.63  Aligned_cols=35  Identities=23%  Similarity=0.496  Sum_probs=30.8

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ++++|.+.++ |.|..|++.|.....|.+|+++|++
T Consensus         3 ~~~~h~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ep0_A            3 SGSSGTGEKP-YKCDVCHKSFRYGSSLTVHQRIHTG   37 (46)
T ss_dssp             CCCSSTTCCS-EECSSSCCEESSHHHHHHHHTTTSS
T ss_pred             CCCCCCCCCC-eeCcccCcccCChHHHHHHHHHhCC
Confidence            4567888776 9999999999999999999999875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.3e-09  Score=50.12  Aligned_cols=35  Identities=29%  Similarity=0.557  Sum_probs=30.5

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +.++|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         3 ~~~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~   37 (45)
T 2epu_A            3 SGSSGTGQKP-FECTHCGKSFRAKGNLVTHQRIHTG   37 (45)
T ss_dssp             CCCCCCSCCS-EEETTTTEEESSHHHHHHHHTTTSS
T ss_pred             CCCCCCCCcC-ccCCCCCCccCChHHHHHHHHHhCC
Confidence            3456778676 9999999999999999999999875

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=3.4e-09  Score=46.15  Aligned_cols=32  Identities=34%  Similarity=0.794  Sum_probs=28.3

Q ss_pred             hhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         67 DECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        67 ~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|.+.++ |.|..|++.|.....|..|+++|++
T Consensus         3 ~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            3 SGSSGKP-YKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             CSCCCCS-EECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCC-CCCCCCCcccCCHHHHHHHHHHccC
Confidence            4667666 9999999999999999999999875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=4.6e-09  Score=45.73  Aligned_cols=32  Identities=22%  Similarity=0.392  Sum_probs=28.0

Q ss_pred             hhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         67 DECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        67 ~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|.+.++ |.|.+|++.|.....|..|+++|++
T Consensus         3 ~h~~~~~-~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            3 SGSSGKT-HLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCCCCSS-CBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCCCC-eecCcCCCCcCchHHHHHHHHHhcC
Confidence            3566566 9999999999999999999999875

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=3.1e-09  Score=47.76  Aligned_cols=32  Identities=31%  Similarity=0.570  Sum_probs=28.7

Q ss_pred             hhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         67 DECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        67 ~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|.+.++ |.|.+|++.|.....|..|+++|++
T Consensus         4 ~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   35 (41)
T 2ept_A            4 GSSGQRV-YECQECGKSFRQKGSLTLHERIHTG   35 (41)
T ss_dssp             SCCCCCC-EECSSSCCEESSHHHHHHHGGGCCC
T ss_pred             ccCCCCC-eECCCCCCCcCCHHHHHHHHHHhCC
Confidence            5677666 9999999999999999999999875

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.78  E-value=5.4e-09  Score=46.46  Aligned_cols=31  Identities=19%  Similarity=0.417  Sum_probs=26.8

Q ss_pred             hhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         68 ECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        68 h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |.+.++ |.|.+|++.|...+.|..|+++|+|
T Consensus         1 h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   31 (39)
T 1njq_A            1 XWPPRS-YTCSFCKREFRSAQALGGHMNVHRR   31 (39)
T ss_dssp             -CCSSS-EECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CCCCCc-eECCCCCcccCCHHHHHHHHHHcCC
Confidence            345565 9999999999999999999999875

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=5.5e-09  Score=47.52  Aligned_cols=32  Identities=34%  Similarity=0.639  Sum_probs=28.6

Q ss_pred             hhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         67 DECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        67 ~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|++.++ |.|..|++.|...+.|..|+++|++
T Consensus         4 ~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   35 (43)
T 2yrm_A            4 GSSGNGA-FFCNECDCRFSEEASLKRHTLQTHS   35 (43)
T ss_dssp             CCSSSCC-BCCSSSCCCBSSHHHHHHHHHHHTC
T ss_pred             CcCCCCC-EECCCCCCeeCChHHHHHHHHhhCC
Confidence            5677666 9999999999999999999999875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.76  E-value=6.1e-10  Score=47.65  Aligned_cols=30  Identities=23%  Similarity=0.376  Sum_probs=26.3

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEP   73 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~   73 (99)
                      +||+|+.|++.|.....|..|+++|+++++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            578999999999999999999999988665

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=7.9e-09  Score=45.03  Aligned_cols=31  Identities=19%  Similarity=0.397  Sum_probs=27.3

Q ss_pred             hhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         68 ECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        68 h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |.+.++ |.|..|++.|.....|..|+++|++
T Consensus         4 ~~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            4 GSSGKI-FTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             TSCCCC-EECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCC-EECCCCCceeCCHHHHHHHHHHhCC
Confidence            455555 9999999999999999999999875

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.6e-09  Score=49.29  Aligned_cols=34  Identities=26%  Similarity=0.477  Sum_probs=30.0

Q ss_pred             hhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         65 KRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        65 ~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +++|.+.++ |.|.+|++.|.....|..|+++|++
T Consensus         4 ~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytt_A            4 GSSGEGEKP-YQCSECGKSFSGSYRLTQHWITHTR   37 (46)
T ss_dssp             SSSCSCCCT-TCCSSSCCCCSSHHHHHHHHTHHHH
T ss_pred             CCCCCCCCC-eeCCCCCcccCCHHHHHHHHHHcCC
Confidence            567888776 9999999999999999999999863

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.75  E-value=7.1e-09  Score=42.15  Aligned_cols=26  Identities=23%  Similarity=0.548  Sum_probs=18.3

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|..|++.|.....|..|+++|+|
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            36777777777777777777777664

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.72  E-value=6.8e-09  Score=48.21  Aligned_cols=34  Identities=21%  Similarity=0.495  Sum_probs=23.8

Q ss_pred             ccccCCCceeCC--cccccccchhHHHhhhhhhhCC
Q psy12010         38 VRQYNSGMFPCD--VCGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        38 ~~~~~~k~~~C~--~c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      ..|+++++|.|+  .|++.|.....|..|+++|+++
T Consensus        11 ~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             hccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            346677777774  5777777777777777777653

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.72  E-value=8.9e-09  Score=42.50  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=16.7

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      ++|.|+.|++.|.....|..|+++|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcC
Confidence            356666666666666666666666654

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=1.5e-09  Score=53.90  Aligned_cols=54  Identities=17%  Similarity=0.213  Sum_probs=45.5

Q ss_pred             CCCCCCCccccCCcccccCccccccCCCceeCC-cccccccchhHHHhhhhhhhCCC
Q psy12010         17 EYSFNWPEVHLNESDFINWPTVRQYNSGMFPCD-VCGKKYKYKWGLSRHKRDECGQE   72 (99)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~-~c~~~f~~~~~l~~h~~~h~~~~   72 (99)
                      .+.|..|+..|. ...+..|... .++++|.|+ .|++.|.....|..|+++|....
T Consensus        10 ~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A           10 TQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             EEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             CeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            456777877777 6677777777 899999999 99999999999999999987644

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.71  E-value=9.4e-09  Score=42.62  Aligned_cols=27  Identities=22%  Similarity=0.466  Sum_probs=15.2

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      ++|.|..|++.|.....|..|++.|.+
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            455555555555555555555555544

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=2.5e-09  Score=54.66  Aligned_cols=57  Identities=16%  Similarity=0.355  Sum_probs=47.5

Q ss_pred             CCCCCCCccccCCcccccCccccccC---CCceeCCcccccccchhHHHhhhh-hhhCCCC
Q psy12010         17 EYSFNWPEVHLNESDFINWPTVRQYN---SGMFPCDVCGKKYKYKWGLSRHKR-DECGQEP   73 (99)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~C~~c~~~f~~~~~l~~h~~-~h~~~~~   73 (99)
                      .+.|..|...|.....+..|...|.+   +++|.|.+|++.|.....|..|++ .|.+..+
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            45678888888888888888888885   899999999999999999999995 5555443

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.70  E-value=1.2e-08  Score=42.01  Aligned_cols=26  Identities=31%  Similarity=0.654  Sum_probs=13.9

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +|.|+.|++.|.....|..|++.|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            45555555555555555555555544

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.70  E-value=1.2e-08  Score=43.73  Aligned_cols=26  Identities=31%  Similarity=0.806  Sum_probs=24.4

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|.+|++.|...+.|..|+++|+|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~   27 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHEL   27 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTT
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCC
Confidence            49999999999999999999999975

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.69  E-value=8.6e-09  Score=42.29  Aligned_cols=25  Identities=32%  Similarity=0.628  Sum_probs=16.1

Q ss_pred             ccCCCCCccccChhHHHHHHHhhcC
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |.|.+|++.|.....|..|+++|+|
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            4 YSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             EECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             ccCCCCCcccCCHHHHHHHHHhcCC
Confidence            6666666666666666666666654

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.69  E-value=1.3e-08  Score=42.16  Aligned_cols=27  Identities=15%  Similarity=0.373  Sum_probs=17.0

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhCC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      +|.|..|++.|.....|..|++.|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            566666666666666666666666553

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.69  E-value=1.2e-08  Score=41.85  Aligned_cols=28  Identities=32%  Similarity=0.735  Sum_probs=25.4

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +++|+|..|++.|.....|..|++.|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4789999999999999999999998864

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.68  E-value=1.4e-08  Score=41.75  Aligned_cols=26  Identities=35%  Similarity=0.662  Sum_probs=15.9

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +|.|..|++.|.....|..|+++|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcC
Confidence            55666666666666666666666554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.68  E-value=1.6e-08  Score=50.59  Aligned_cols=31  Identities=16%  Similarity=0.143  Sum_probs=27.3

Q ss_pred             hhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         68 ECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        68 h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +.++++ |.|.+|++.|.....|.+|+++|++
T Consensus         8 ~~~ekp-y~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A            8 LREAGI-LPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCC-CCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CCCccC-cCCCCCCCccCCHHHHHhhhhhhCC
Confidence            445555 9999999999999999999999985

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.67  E-value=1.2e-08  Score=41.52  Aligned_cols=23  Identities=22%  Similarity=0.712  Sum_probs=14.8

Q ss_pred             ccCCCCCccccChhHHHHHHHhh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      |.|..|++.|...+.|..|+++|
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            4 FSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHC
T ss_pred             ccCCCcChhhCCHHHHHHHHHHc
Confidence            66666666666666666666655

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.66  E-value=4.3e-09  Score=52.97  Aligned_cols=54  Identities=19%  Similarity=0.252  Sum_probs=45.7

Q ss_pred             CCCCCCCC--CccccCCcccccCccccccCCCceeCCc--ccccccchhHHHhhhhhh
Q psy12010         15 FPEYSFNW--PEVHLNESDFINWPTVRQYNSGMFPCDV--CGKKYKYKWGLSRHKRDE   68 (99)
Q Consensus        15 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~C~~--c~~~f~~~~~l~~h~~~h   68 (99)
                      ...+.|..  |...|.....+..|...|.++++|.|.+  |++.|.....|..|+++|
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34456766  8888888888888889999999999965  999999999999998865

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.66  E-value=1.6e-08  Score=41.55  Aligned_cols=26  Identities=23%  Similarity=0.374  Sum_probs=14.3

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +|.|..|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            45555555555555555555555544

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.65  E-value=2.5e-08  Score=41.01  Aligned_cols=26  Identities=19%  Similarity=0.456  Sum_probs=24.3

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|..|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            49999999999999999999999875

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.65  E-value=1.2e-08  Score=46.73  Aligned_cols=32  Identities=28%  Similarity=0.701  Sum_probs=28.6

Q ss_pred             hhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         67 DECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        67 ~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|++.++ |.|.+|++.|.....|..|+++|++
T Consensus         4 ~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~   35 (45)
T 2epq_A            4 GSSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDG   35 (45)
T ss_dssp             CCSSCCS-SEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CcCCCCC-CcCCCCCcccCCHHHHHHHHHHccC
Confidence            5677666 9999999999999999999999875

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.65  E-value=6e-09  Score=48.39  Aligned_cols=37  Identities=11%  Similarity=0.329  Sum_probs=31.1

Q ss_pred             HhhhhhhhCCCCcccCC--CCCccccChhHHHHHHHhhcC
Q psy12010         62 SRHKRDECGQEPKYQCP--QCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        62 ~~h~~~h~~~~~~~~c~--~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ..|...|.++++ |.|.  .|++.|...+.|..|+++|+|
T Consensus         7 ~~~~~~H~~~k~-~~C~~~~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A            7 IDKYVKEMPDKT-FECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             GGGSCEEETTTE-EECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             HHHHhccCCCCC-eECCCCCCCCccCCHHHHHHHHHHccC
Confidence            345556888776 9996  799999999999999999975

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.65  E-value=2.2e-08  Score=40.72  Aligned_cols=27  Identities=19%  Similarity=0.469  Sum_probs=24.7

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhh
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      +++|.|..|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999998874

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.64  E-value=9.7e-09  Score=41.96  Aligned_cols=23  Identities=30%  Similarity=0.693  Sum_probs=13.9

Q ss_pred             ccCCCCCccccChhHHHHHHHhh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      |.|..|++.|...+.|..|+++|
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            4 YRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             EEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCCCCCCcccCCHHHHHHHHHhc
Confidence            56666666666666666665554

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.64  E-value=2.5e-08  Score=42.16  Aligned_cols=27  Identities=30%  Similarity=0.588  Sum_probs=14.7

Q ss_pred             CceeCC--cccccccchhHHHhhhhhhhC
Q psy12010         44 GMFPCD--VCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        44 k~~~C~--~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      ++|.|.  .|++.|.....|..|+++|++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            455555  555555555555555555544

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.63  E-value=2.2e-08  Score=43.94  Aligned_cols=31  Identities=13%  Similarity=0.270  Sum_probs=26.9

Q ss_pred             hhCCCCcccCC--CCCccccChhHHHHHHHhhcC
Q psy12010         68 ECGQEPKYQCP--QCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        68 h~~~~~~~~c~--~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |++.++ |.|.  .|++.|...+.|..|+++|+|
T Consensus         3 ~~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            3 PGKKKQ-HICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             SSSCCC-EECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCC-CCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            456565 9998  499999999999999999875

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.63  E-value=3.1e-09  Score=59.20  Aligned_cols=54  Identities=17%  Similarity=0.182  Sum_probs=44.3

Q ss_pred             CCCceeCCccccccc------chhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhh
Q psy12010         42 NSGMFPCDVCGKKYK------YKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        42 ~~k~~~C~~c~~~f~------~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      ..+.+.|++|.+.|.      ....|..|+ .|++.++ |.|..|++.|.....|..|+++|
T Consensus        38 ~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~-~~C~~C~k~f~~~~~l~~H~~~H   97 (129)
T 2wbt_A           38 EQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQ-FVCPLCLMPFSSSVSLKQHIRYT   97 (129)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCS-EECTTTCCEESSHHHHHHHHHHT
T ss_pred             hhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCC-eECCCCCcccCCHhHHHHHHHHC
Confidence            356788999888776      455666666 5778666 99999999999999999999986

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.4e-08  Score=47.04  Aligned_cols=35  Identities=23%  Similarity=0.541  Sum_probs=30.7

Q ss_pred             hhhhhhCCCCcccCC--CCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCP--QCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~--~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |.++|++.++ |.|.  .|++.|.....|..|+++|++
T Consensus         3 ~~~~H~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~H~~   39 (48)
T 2ent_A            3 SGSSGTGEKP-FACTWPGCGWRFSRSDELSRHRRSHSG   39 (48)
T ss_dssp             CCCSSCCCCC-EECCSSSCCCEESSHHHHHHHHTTSCC
T ss_pred             CCCCcCCCCC-eECCCCCCCCccCCHHHHHHHHHHhCC
Confidence            5567888776 9998  899999999999999999875

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.62  E-value=2.2e-08  Score=41.26  Aligned_cols=26  Identities=31%  Similarity=0.804  Sum_probs=24.3

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|..|++.|.....|..|+++|+|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            49999999999999999999999875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.61  E-value=2.4e-08  Score=41.96  Aligned_cols=26  Identities=42%  Similarity=0.813  Sum_probs=12.9

Q ss_pred             ceeCC--cccccccchhHHHhhhhhhhC
Q psy12010         45 MFPCD--VCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        45 ~~~C~--~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      ||.|+  .|++.|.....|..|+++|++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            44454  455555555555555554443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.61  E-value=2.9e-08  Score=43.64  Aligned_cols=31  Identities=19%  Similarity=0.434  Sum_probs=26.7

Q ss_pred             hhCCCCcccCC--CCCccccChhHHHHHHHhhcC
Q psy12010         68 ECGQEPKYQCP--QCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        68 h~~~~~~~~c~--~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |++.++ |.|.  .|++.|...+.|.+|+++|++
T Consensus         1 H~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~H~~   33 (38)
T 1bhi_A            1 MSDDKP-FLCTAPGCGQRFTNEDHLAVHKHKHEM   33 (38)
T ss_dssp             CTTCCC-EECCCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             CCCCcc-eECCCCCCCcccCCHHHHHHHHHHhCC
Confidence            356565 9999  599999999999999999875

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.61  E-value=3.8e-08  Score=40.66  Aligned_cols=26  Identities=23%  Similarity=0.465  Sum_probs=24.3

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|..|++.|.....|..|+++|+|
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhcc
Confidence            49999999999999999999999875

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.60  E-value=1.8e-08  Score=41.11  Aligned_cols=27  Identities=15%  Similarity=0.359  Sum_probs=24.5

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhh
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      ++||+|+.|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999998773

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.02  E-value=5.5e-09  Score=43.27  Aligned_cols=26  Identities=31%  Similarity=0.589  Sum_probs=15.5

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +|.|..|++.|.....|..|++.|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            45666666666666666666655554

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.59  E-value=3.1e-08  Score=40.62  Aligned_cols=26  Identities=31%  Similarity=0.673  Sum_probs=24.2

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|..|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            49999999999999999999999875

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.59  E-value=3.7e-08  Score=40.71  Aligned_cols=26  Identities=46%  Similarity=0.953  Sum_probs=24.3

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|.+|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHcc
Confidence            49999999999999999999999875

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.58  E-value=3.2e-08  Score=40.62  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=24.2

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|..|++.|.....|..|+++|+|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcC
Confidence            49999999999999999999999875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.58  E-value=4.5e-08  Score=41.05  Aligned_cols=26  Identities=19%  Similarity=0.459  Sum_probs=24.1

Q ss_pred             cccCC--CCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCP--QCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~--~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|.  .|++.|...+.|..|+++|+|
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            49998  999999999999999999976

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.00  E-value=6.3e-09  Score=43.27  Aligned_cols=27  Identities=26%  Similarity=0.477  Sum_probs=16.7

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      ++|.|..|++.|.....|..|+++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            456666666666666666666666554

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.57  E-value=3.6e-08  Score=39.91  Aligned_cols=26  Identities=31%  Similarity=0.621  Sum_probs=23.7

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +|+|..|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            58999999999999999999999876

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.53  E-value=1e-07  Score=40.18  Aligned_cols=26  Identities=19%  Similarity=0.381  Sum_probs=24.3

Q ss_pred             cccCC--CCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCP--QCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~--~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|.  .|++.|...+.|..|+++|+|
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            49999  899999999999999999975

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.52  E-value=7.7e-08  Score=48.42  Aligned_cols=31  Identities=26%  Similarity=0.448  Sum_probs=26.2

Q ss_pred             hhCCCCcccCCC--CCccccChhHHHHHH-HhhcC
Q psy12010         68 ECGQEPKYQCPQ--CPYRASQKATLKTHM-AIKHS   99 (99)
Q Consensus        68 h~~~~~~~~c~~--C~~~f~~~~~l~~H~-~~~~~   99 (99)
                      .+|++| |+|..  |+++|...+.|.+|+ ++|++
T Consensus        22 ~sGEKP-YkC~~~~CgKaFsr~s~L~~H~rriHTg   55 (73)
T 1x3c_A           22 YSPYRP-YRCVHQGCFAAFTIQQNLILHYQAVHKS   55 (73)
T ss_dssp             SCSSCS-CBCCSTTCCCBCSSHHHHHHHHHHHSSS
T ss_pred             ccCCCC-eECCCCCcChhHcCHHHHHHHhhhhCCC
Confidence            457666 99975  999999999999997 68875

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.52  E-value=4.7e-08  Score=40.51  Aligned_cols=26  Identities=23%  Similarity=0.631  Sum_probs=13.3

Q ss_pred             ceeCCcccccccchhHHHhh-hhhhhC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRH-KRDECG   70 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h-~~~h~~   70 (99)
                      +|.|..|++.|.....|..| +++|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            45555555555555555555 444443

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.91  E-value=1.2e-08  Score=42.20  Aligned_cols=26  Identities=23%  Similarity=0.384  Sum_probs=24.2

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|..|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            49999999999999999999999875

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.91  E-value=1.2e-08  Score=41.15  Aligned_cols=23  Identities=30%  Similarity=0.613  Sum_probs=13.7

Q ss_pred             ccCCCCCccccChhHHHHHHHhh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      |.|.+|++.|...+.|..|+++|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            3 YVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            55666666666666666665554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.89  E-value=1.4e-08  Score=40.95  Aligned_cols=26  Identities=27%  Similarity=0.579  Sum_probs=23.8

Q ss_pred             CceeCCcccccccchhHHHhhhhhhh
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      +||.|+.|++.|.....|..|++.|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999998873

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.49  E-value=7.3e-08  Score=39.52  Aligned_cols=25  Identities=24%  Similarity=0.541  Sum_probs=16.5

Q ss_pred             ccCC--CCCccccChhHHHHHHHhhcC
Q psy12010         75 YQCP--QCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~--~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |.|.  .|++.|...+.|..|+++|+|
T Consensus         3 ~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            3 YVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             EEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            6666  666666666666666666654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.47  E-value=8.5e-08  Score=39.67  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=23.6

Q ss_pred             cccCCCCCccccChhHHHHH-HHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTH-MAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H-~~~~~~   99 (99)
                      ||.|..|++.|...+.|..| +++|+|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            49999999999999999999 688875

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.45  E-value=8.6e-08  Score=42.24  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             hhCCCCcccCCCCCccccChhHHHHHHH
Q psy12010         68 ECGQEPKYQCPQCPYRASQKATLKTHMA   95 (99)
Q Consensus        68 h~~~~~~~~c~~C~~~f~~~~~l~~H~~   95 (99)
                      +.++++ |.|.+|+++|.+.+.|.+|+.
T Consensus         3 ~~gekp-~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            3 LLKPAR-FMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSSCCC-CEETTTTEECSCHHHHHHHHH
T ss_pred             CCCccC-eECCCCCCccCCHhHccCcCC
Confidence            346565 999999999999999999974

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.83  E-value=2.2e-08  Score=41.50  Aligned_cols=26  Identities=23%  Similarity=0.565  Sum_probs=24.1

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|..|++.|.....|..|+++|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            49999999999999999999999875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.44  E-value=7e-09  Score=44.20  Aligned_cols=26  Identities=27%  Similarity=0.676  Sum_probs=24.2

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|.+|++.|...+.|..|+++|++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~   27 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFI   27 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHcc
Confidence            49999999999999999999999875

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.42  E-value=1.3e-07  Score=38.69  Aligned_cols=27  Identities=30%  Similarity=0.732  Sum_probs=24.7

Q ss_pred             CceeCC--cccccccchhHHHhhhhhhhC
Q psy12010         44 GMFPCD--VCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        44 k~~~C~--~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      ++|.|.  .|++.|.....|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            479999  999999999999999999864

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.42  E-value=1.1e-07  Score=44.02  Aligned_cols=31  Identities=13%  Similarity=0.140  Sum_probs=27.0

Q ss_pred             hhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         68 ECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        68 h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +.+.++ |.|.+|++.|.....|.+|+++|++
T Consensus         7 ~~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~   37 (48)
T 2epr_A            7 GRTRKQ-VACEICGKIFRDVYHLNRHKLSHSG   37 (48)
T ss_dssp             CCCCCS-EEETTTTEEESSHHHHHHHGGGSCS
T ss_pred             CCCCcC-eeCCCCCcccCCHHHHHHHHHhcCC
Confidence            445455 9999999999999999999999875

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.35  E-value=1.2e-07  Score=49.92  Aligned_cols=36  Identities=22%  Similarity=0.467  Sum_probs=30.7

Q ss_pred             hhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        63 ~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .+.++|++.++ |.|.+|++.|.....|..|+++|++
T Consensus        15 ~~~~~H~~~kp-y~C~~C~k~F~~~~~L~~H~~~Ht~   50 (88)
T 1x6f_A           15 LGNGPRLQNST-YQCKHCDSKLQSTAELTSHLNIHNE   50 (88)
T ss_dssp             CCCCSCCCCSC-EECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             ccccccCCCCC-CcCCCCCCEeCCHHHHHHHHHHhCC
Confidence            34556888776 9999999999999999999999863

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.25  E-value=6.7e-07  Score=42.40  Aligned_cols=32  Identities=25%  Similarity=0.481  Sum_probs=26.9

Q ss_pred             hhhCCCCcccCCCCCccccChhHHHHHHH-hhcC
Q psy12010         67 DECGQEPKYQCPQCPYRASQKATLKTHMA-IKHS   99 (99)
Q Consensus        67 ~h~~~~~~~~c~~C~~~f~~~~~l~~H~~-~~~~   99 (99)
                      .+.+.++ |.|.+|++.|.....|.+|++ +|++
T Consensus         6 ~~~~~k~-~~C~~C~k~f~~~~~L~~H~~~~H~~   38 (54)
T 2eps_A            6 SGSVGKP-YICQSCGKGFSRPDHLNGHIKQVHTS   38 (54)
T ss_dssp             CCCSSCC-EECSSSCCEESSHHHHHHHHHHTSCC
T ss_pred             CCCCCCC-eECCCCCcccCCHHHHHHHHHHhcCC
Confidence            3556565 999999999999999999997 7764

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.25  E-value=2.6e-06  Score=42.11  Aligned_cols=52  Identities=21%  Similarity=0.473  Sum_probs=43.9

Q ss_pred             eCCcccccccchhHHHhhhh-hhhCCC-----CcccCC--CCCccccChhHHHHHHHhhc
Q psy12010         47 PCDVCGKKYKYKWGLSRHKR-DECGQE-----PKYQCP--QCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        47 ~C~~c~~~f~~~~~l~~h~~-~h~~~~-----~~~~c~--~C~~~f~~~~~l~~H~~~~~   98 (99)
                      .+..|++.|.....|..|+. .|.+.+     .+|.|.  .|+..+.....|.+|+++.|
T Consensus         5 ~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            5 KWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             eeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            45679999999999999984 787755     249996  89999999999999999875

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.20  E-value=1.1e-07  Score=46.64  Aligned_cols=35  Identities=14%  Similarity=0.427  Sum_probs=28.7

Q ss_pred             HHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         61 LSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        61 l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |..|++.|.+.++ |.|.+|++.|.....|.   ++|+|
T Consensus         2 L~~h~~~H~~~k~-~~C~~C~k~F~~~~~l~---~~H~~   36 (62)
T 1vd4_A            2 IETDERDSTNRAS-FKCPVCSSTFTDLEANQ---LFDPM   36 (62)
T ss_dssp             CCCCSSSCCSSSE-EECSSSCCEEEHHHHHH---HEETT
T ss_pred             hhhHHHHcCCCCC-ccCCCCCchhccHHHhH---hhcCC
Confidence            4578889999776 99999999999988886   56653

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.44  E-value=3e-05  Score=43.10  Aligned_cols=32  Identities=19%  Similarity=0.343  Sum_probs=27.1

Q ss_pred             cccccCCCceeCCcccccccchhHHHhhhhhh
Q psy12010         37 TVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDE   68 (99)
Q Consensus        37 ~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h   68 (99)
                      .-.++|+++|.|..|++.|.+...|..|+++.
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            34577889999999999999999999998853

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.35  E-value=2.3e-05  Score=39.70  Aligned_cols=36  Identities=31%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             hHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhh
Q psy12010         59 WGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        59 ~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      ..|..|++.+.+.++ +.|..|++.|. ...|..|+ .+
T Consensus         3 ~~L~~H~~~~c~~r~-~~C~~C~~~~~-~~~L~~H~-~~   38 (75)
T 2d9k_A            3 SGSSGHEETECPLRL-AVCQHCDLELS-ILKLKEHE-DY   38 (75)
T ss_dssp             CCCSCCCCCCCCCCC-EECSSSCCEEC-HHHHHHHH-HH
T ss_pred             hHHHhhCcccCCCcc-cCCcccChHhh-HHHHHHHH-hH
Confidence            356788888888777 99999999995 88899998 54

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.19  E-value=8.3e-05  Score=41.31  Aligned_cols=31  Identities=29%  Similarity=0.356  Sum_probs=26.5

Q ss_pred             hhhhCCCCcccCCCCCccccChhHHHHHHHhh
Q psy12010         66 RDECGQEPKYQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        66 ~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      .-++|.++ |.|..|++.|.+...|..|+++.
T Consensus        43 ed~tGekp-fyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPGGGL-HRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGGGGC-SEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccCCCCcc-eEcccCcchhCCHHHHHHHHhhh
Confidence            34677676 99999999999999999998753

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.46  E-value=0.0039  Score=34.66  Aligned_cols=51  Identities=18%  Similarity=0.280  Sum_probs=39.0

Q ss_pred             CceeCCcccccccchhHHHhhhh--hh-------------------------------hCCCCcccCCCCCccccChhHH
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKR--DE-------------------------------CGQEPKYQCPQCPYRASQKATL   90 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~--~h-------------------------------~~~~~~~~c~~C~~~f~~~~~l   90 (99)
                      +++.|..|...|.+...+..|..  .|                               .+.. .|-|..|.+.|.+...+
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~C~~C~~~f~s~~~~  109 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDR-SKCCPVCNMTFSSPVVA  109 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCT-TTEETTTTEECSSHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCC-CeEcCCCCCEeCCHHHH
Confidence            56889999999988877777762  22                               1112 37899999999999999


Q ss_pred             HHHHH
Q psy12010         91 KTHMA   95 (99)
Q Consensus        91 ~~H~~   95 (99)
                      ..|..
T Consensus       110 ~~H~~  114 (127)
T 1zu1_A          110 ESHYI  114 (127)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            99965

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.34  E-value=0.0022  Score=29.41  Aligned_cols=27  Identities=22%  Similarity=0.410  Sum_probs=23.4

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      ..|.|+.|+..|.....|+.||+-.-+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp   37 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCP   37 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCc
Confidence            568999999999999999999985444

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.30  E-value=0.0038  Score=28.60  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=20.6

Q ss_pred             ccCCCCCccccChhHHHHHHHh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAI   96 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~   96 (99)
                      |.|+-|+..|.....|.+|++.
T Consensus        13 ~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           13 KICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHH
T ss_pred             eeCCcccccccchHHHHhhhhh
Confidence            9999999999999999999873

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.47  E-value=0.017  Score=33.35  Aligned_cols=53  Identities=15%  Similarity=0.405  Sum_probs=38.0

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .+..|+.|+..+ ....|..|....-..+. ..|..|+..+... .|..|..++.|
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~-~~C~~C~~~~~~~-~l~~H~~~~~~  161 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCPRRQ-VSCDNCAASMAFE-DKEIHDQNCPL  161 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCTTCE-EECTTTCCEEEGG-GHHHHHTTCCC
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCCCCC-eECCCCCCccCHH-HHHhHHHhCcC
Confidence            456788888777 45567888765545455 8899998887664 48888877654

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=93.98  E-value=0.035  Score=28.81  Aligned_cols=28  Identities=29%  Similarity=0.549  Sum_probs=20.5

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhhCCCC
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDECGQEP   73 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~   73 (99)
                      .....|.+||+.|..   |.+|+..++|-.+
T Consensus        19 ~d~iiClecGK~fK~---LkRHL~~~hgltp   46 (87)
T 2jsp_A           19 DDHIVCLECGGSFKS---LKRHLTTHHSMTP   46 (87)
T ss_dssp             SSCEECTBTCCEESB---HHHHHHHTTCSCH
T ss_pred             CCceEecccchhhHH---HHHHHHHccCCCH
Confidence            345688999988874   6788888777543

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.25  E-value=0.1  Score=22.21  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=15.1

Q ss_pred             ccCCCCCccccChhHHHHHHHhh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      |.|+.|.+.|.+...|..|-...
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~   28 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAV   28 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhc
Confidence            66777777777777776665443

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=93.09  E-value=0.049  Score=26.41  Aligned_cols=46  Identities=7%  Similarity=-0.018  Sum_probs=32.2

Q ss_pred             CccccCCcccccCcc-ccccCCC------ceeCC--cccccccchhHHHhhhhhh
Q psy12010         23 PEVHLNESDFINWPT-VRQYNSG------MFPCD--VCGKKYKYKWGLSRHKRDE   68 (99)
Q Consensus        23 ~~~~~~~~~~~~~~~-~~~~~~k------~~~C~--~c~~~f~~~~~l~~h~~~h   68 (99)
                      |...|.....+..|. ..|.+.+      +|.|.  .|++.+.....|..|++..
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            444455555444443 5676554      78985  9999999989999998864

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=90.69  E-value=0.19  Score=23.60  Aligned_cols=20  Identities=20%  Similarity=0.615  Sum_probs=15.1

Q ss_pred             ccCCCCCccccChhHHHHHH
Q psy12010         75 YQCPQCPYRASQKATLKTHM   94 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~   94 (99)
                      -.|..|+..|..+-.|+.|+
T Consensus        14 ~eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccccccCcccccccchhhhh
Confidence            57788888887777777774

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=90.50  E-value=0.13  Score=26.18  Aligned_cols=40  Identities=23%  Similarity=0.453  Sum_probs=24.1

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQ   86 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~   86 (99)
                      .|.|+.||..+.- ..+..|...-.+... |.|-.|++.|..
T Consensus        10 ~F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~-~SCIDC~~~F~~   49 (79)
T 1wjv_A           10 FFTCNACGESVKK-IQVEKHVSNCRNCEC-LSCIDCGKDFWG   49 (79)
T ss_dssp             EEEESSSCCEEET-THHHHHHHHCTTCCE-EEETTTTEEEEG
T ss_pred             EEEcCCCCCeeec-ccchhHHhhCCCCCc-EEecccCCeeCC
Confidence            4677777766543 345666554444334 777777777764

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.05  E-value=0.17  Score=25.54  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=15.9

Q ss_pred             ccCCCCCcccc-------ChhHHHHHHHhhc
Q psy12010         75 YQCPQCPYRAS-------QKATLKTHMAIKH   98 (99)
Q Consensus        75 ~~c~~C~~~f~-------~~~~l~~H~~~~~   98 (99)
                      -.|..|++.+.       -.+.|.+|++..|
T Consensus        29 A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H   59 (76)
T 2djr_A           29 ATCRLCGRQVSRGPGVNVGTTALWKHLKSMH   59 (76)
T ss_dssp             EEESSSCCBCCCCSSCCSSSCHHHHHHHHTT
T ss_pred             EECCCCCCccCCCCCCCCchHHHHHHHHHHC
Confidence            56666766665       2467888887665

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=89.59  E-value=0.24  Score=21.25  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=10.3

Q ss_pred             ccCCCCCccccChhHHHHHH
Q psy12010         75 YQCPQCPYRASQKATLKTHM   94 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~   94 (99)
                      +.|..|.-+|..-..+..|+
T Consensus         9 ~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            9 KYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHH
T ss_pred             CeeccccceehhhHHHhhhh
Confidence            44555555555555555554

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=88.61  E-value=0.33  Score=22.06  Aligned_cols=37  Identities=22%  Similarity=0.449  Sum_probs=21.0

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcc
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR   83 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~   83 (99)
                      +.|.|.+||..|.-...-.  ......... +.|++||..
T Consensus         3 ~~y~C~vCGyvyd~~~Gd~--t~f~~lP~d-w~CP~Cg~~   39 (46)
T 6rxn_A            3 QKYVCNVCGYEYDPAEHDN--VPFDQLPDD-WCCPVCGVS   39 (46)
T ss_dssp             CCEEETTTCCEECGGGGTT--CCGGGSCTT-CBCTTTCCB
T ss_pred             CEEECCCCCeEEeCCcCCC--cchhhCCCC-CcCcCCCCc
Confidence            4589999998876431100  011111233 799999854

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=88.43  E-value=0.29  Score=21.39  Aligned_cols=26  Identities=23%  Similarity=0.664  Sum_probs=19.6

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhh
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      ...+.|+.|++.+.. ..+..|..-|.
T Consensus         7 ~~~~~C~~C~~~i~~-~~~~EH~D~H~   32 (39)
T 2i5o_A            7 EDQVPCEKCGSLVPV-WDMPEHMDYHF   32 (39)
T ss_dssp             CCEEECTTTCCEEEG-GGHHHHHHHHH
T ss_pred             CCCcccccccCcCCc-ccccchhhHHH
Confidence            345889999999887 55677877664

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=88.42  E-value=0.33  Score=26.04  Aligned_cols=30  Identities=23%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccc
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA   84 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f   84 (99)
                      ..++.|..||..|..            ....|..|+.|+...
T Consensus        65 v~p~~C~~CG~~F~~------------~~~kPsrCP~CkSe~   94 (105)
T 2gmg_A           65 IKPAQCRKCGFVFKA------------EINIPSRCPKCKSEW   94 (105)
T ss_dssp             ECCCBBTTTCCBCCC------------CSSCCSSCSSSCCCC
T ss_pred             EECcChhhCcCeecc------------cCCCCCCCcCCCCCc
Confidence            467889999988811            112337888887554

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=87.44  E-value=0.37  Score=28.84  Aligned_cols=27  Identities=33%  Similarity=0.674  Sum_probs=20.1

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcc
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR   83 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~   83 (99)
                      ...|.|..||..+.             | ..|+.|+.|+..
T Consensus       169 ~~~~~C~~CG~i~~-------------g-~~p~~CP~C~~~  195 (202)
T 1yuz_A          169 DKFHLCPICGYIHK-------------G-EDFEKCPICFRP  195 (202)
T ss_dssp             CCEEECSSSCCEEE-------------S-SCCSBCTTTCCB
T ss_pred             CcEEEECCCCCEEc-------------C-cCCCCCCCCCCC
Confidence            45799999997753             3 344999999853

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=85.97  E-value=0.28  Score=22.34  Aligned_cols=30  Identities=27%  Similarity=0.744  Sum_probs=17.3

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcc
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR   83 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~   83 (99)
                      -|.|--||+.|....     +..    -|-..|+.||..
T Consensus         3 iY~C~rCg~~fs~~e-----l~~----lP~IrCpyCGyr   32 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQ-----LKV----LPGVRCPYCGYK   32 (48)
T ss_dssp             --CCCCTTTTCCCCC-----SCC----CSSSCCTTTCCS
T ss_pred             EEEeeccCCCccHHH-----Hhh----CCCcccCccCcE
Confidence            477888888886632     111    122678888865

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=85.94  E-value=0.69  Score=19.22  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=11.5

Q ss_pred             cCCCCCccccChhHHHHHHHh
Q psy12010         76 QCPQCPYRASQKATLKTHMAI   96 (99)
Q Consensus        76 ~c~~C~~~f~~~~~l~~H~~~   96 (99)
                      .|..|.+.++.--+|..|++-
T Consensus        11 hcrfckkkysdvknlikhire   31 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRD   31 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            355555555555555555553

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=85.35  E-value=0.58  Score=18.88  Aligned_cols=20  Identities=25%  Similarity=0.263  Sum_probs=13.8

Q ss_pred             eeCCcccccccchhHHHhhh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHK   65 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~   65 (99)
                      +.|++|.........+..|-
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~   23 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHV   23 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHH
Confidence            67777777777766666653

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=84.27  E-value=0.62  Score=28.00  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=14.1

Q ss_pred             CCceeCCcccccccc-hhHHHhhhhhh
Q psy12010         43 SGMFPCDVCGKKYKY-KWGLSRHKRDE   68 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~-~~~l~~h~~~h   68 (99)
                      ..++.|..|+..|.+ -..|+.|...|
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            345556666666654 45555555543

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=83.99  E-value=0.81  Score=22.67  Aligned_cols=28  Identities=18%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCc
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPY   82 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~   82 (99)
                      .-.|.|..||..|...          .+ .. ..|+.||.
T Consensus        26 ~v~Y~C~~CG~~~e~~----------~~-d~-irCp~CG~   53 (70)
T 1twf_L           26 TLKYICAECSSKLSLS----------RT-DA-VRCKDCGH   53 (70)
T ss_dssp             CCCEECSSSCCEECCC----------TT-ST-TCCSSSCC
T ss_pred             eEEEECCCCCCcceeC----------CC-CC-ccCCCCCc
Confidence            3459999999887543          12 44 78999987

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=83.73  E-value=0.26  Score=26.90  Aligned_cols=31  Identities=23%  Similarity=0.589  Sum_probs=19.9

Q ss_pred             CceeCCcccc-cccchhHHHhhhhhhhCCCCcccCCCCCccccC
Q psy12010         44 GMFPCDVCGK-KYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQ   86 (99)
Q Consensus        44 k~~~C~~c~~-~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~   86 (99)
                      ..|.|++||+ .+....         .  .- +.|..|++.|.-
T Consensus        59 akytCPfCGk~~vKR~a---------v--GI-W~C~~Cgk~fAG   90 (116)
T 3cc2_Z           59 EDHACPNCGEDRVDRQG---------T--GI-WQCSYCDYKFTG   90 (116)
T ss_dssp             SCEECSSSCCEEEEEEE---------T--TE-EEETTTCCEEEC
T ss_pred             cCCcCCCCCCceeEecC---------c--ee-EECCCCCCEEEC
Confidence            4589999986 222221         1  23 899999988743

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=83.13  E-value=2.5  Score=19.82  Aligned_cols=47  Identities=28%  Similarity=0.571  Sum_probs=34.1

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCc-cccChhHHHHHHHh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPY-RASQKATLKTHMAI   96 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~-~f~~~~~l~~H~~~   96 (99)
                      ..|++|-........|..|...-..    -+|++|-. .-.+.+.|+.|.++
T Consensus         4 mvC~~C~~ECET~kEl~~H~~sCp~----gqCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            4 MVCDVCHHECETAKELESHRQSCIN----GQCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             TBCTTTCCBCSSTTTHHHHHHHHTT----TBCTTTCCBCCSSHHHHHHHHTT
T ss_pred             chhhHHHhhhhhHHHHHHHhccCCC----CCCCcccCcCCcCHHHHHHHHHH
Confidence            4688888777778888999887654    35566643 45778889998765

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=82.73  E-value=0.3  Score=28.90  Aligned_cols=27  Identities=26%  Similarity=0.634  Sum_probs=19.3

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcc
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR   83 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~   83 (99)
                      +.|.|..||..+.             |...|-.|+.|+..
T Consensus       154 ~~~~C~~CG~~~~-------------g~~~p~~CP~C~~~  180 (191)
T 1lko_A          154 TKWRCRNCGYVHE-------------GTGAPELCPACAHP  180 (191)
T ss_dssp             EEEEETTTCCEEE-------------EEECCSBCTTTCCB
T ss_pred             ceEEECCCCCEee-------------CCCCCCCCCCCcCC
Confidence            3699999998764             22344799999854

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=82.52  E-value=1.1  Score=26.89  Aligned_cols=24  Identities=21%  Similarity=0.402  Sum_probs=20.6

Q ss_pred             cccCCCCCccccC-hhHHHHHHHhh
Q psy12010         74 KYQCPQCPYRASQ-KATLKTHMAIK   97 (99)
Q Consensus        74 ~~~c~~C~~~f~~-~~~l~~H~~~~   97 (99)
                      |..|..|+..|.. -..|+.|+..+
T Consensus       169 ~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          169 DLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             CCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CceeCCCCchhhcccHHHHHHHHHH
Confidence            4999999999976 89999998754

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=82.14  E-value=0.78  Score=25.25  Aligned_cols=27  Identities=15%  Similarity=0.143  Sum_probs=22.9

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhh
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKR   66 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~   66 (99)
                      ..+.+.|-|..|++.|.+...+..|..
T Consensus        88 ~~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           88 DGEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             SCCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             cCCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            345677899999999999999988866

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=82.12  E-value=0.9  Score=26.41  Aligned_cols=26  Identities=27%  Similarity=0.686  Sum_probs=19.3

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCc
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPY   82 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~   82 (99)
                      ..-|.|..||..+.             + ..|-.|+.||.
T Consensus       136 ~~~~~C~~CG~i~~-------------~-~~p~~CP~Cg~  161 (170)
T 3pwf_A          136 KKVYICPICGYTAV-------------D-EAPEYCPVCGA  161 (170)
T ss_dssp             SCEEECTTTCCEEE-------------S-CCCSBCTTTCC
T ss_pred             CCeeEeCCCCCeeC-------------C-CCCCCCCCCCC
Confidence            45699999998763             2 33479999984

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=81.10  E-value=0.21  Score=25.64  Aligned_cols=31  Identities=26%  Similarity=0.640  Sum_probs=19.8

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcccc
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRAS   85 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~   85 (99)
                      ..|.|+.||+.....          .+... +.|..|++.|.
T Consensus        26 ~~y~Cp~CG~~~v~r----------~atGi-W~C~~Cg~~~a   56 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDR----------QGTGI-WQCSYCDYKFT   56 (83)
T ss_dssp             SCEECSSSCCEEEEE----------EETTE-EEETTTCCEEE
T ss_pred             ccCcCCCCCCcceec----------cCCCe-EECCCCCCEec
Confidence            468999999632111          11133 89999998764

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=80.78  E-value=1.4  Score=24.19  Aligned_cols=29  Identities=17%  Similarity=0.224  Sum_probs=22.3

Q ss_pred             CCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         42 NSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        42 ~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      .+.+..|-.|.+.|.....+..|++..++
T Consensus        12 e~~~~~CLFCd~~~~s~~~~l~H~k~~H~   40 (121)
T 1wir_A           12 GRQHTPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             CCCceeEecCCCcccCHHHHHHHHHHhcC
Confidence            34568888888888888888888886544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-04
d1klra_	30	g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 96	0.002
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	0.002
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.002
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.003
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.004

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 1e-05
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
          +PC  CGK + +K    RH          Y C  C  +   K  L  HM I
Sbjct: 4  YPCQ-CGKSFTHKSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKI 52

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (78), Expect = 2e-04
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
          Y+C  C  R +Q  T+K H+  KH+
Sbjct: 9  YECYICHARFTQSGTMKMHILQKHT 33

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.3 bits (70), Expect = 0.002
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
          YQC  C +R++  + LKTH+  KHS
Sbjct: 3  YQCQYCEFRSADSSNLKTHIKTKHS 27

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.9 bits (70), Expect = 0.002
 Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 63 RHKRDECGQEPKYQCPQCPYRASQKATLKTHMAI 96
          R +  +  +   Y+C +C    S  + L  H   
Sbjct: 2  RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRT 34

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.1 bits (71), Expect = 0.002
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 75 YQCPQCPYRASQKATLKTHMAIKHS 99
          Y C  C    S+   L  H+   H+
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVHT 30

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.8 bits (70), Expect = 0.003
 Identities = 9/27 (33%), Positives = 9/27 (33%)

Query: 72 EPKYQCPQCPYRASQKATLKTHMAIKH 98
          E  Y C  C     QK  L  H    H
Sbjct: 6  EKPYACSHCDKTFRQKQLLDMHFKRYH 32

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.3 bits (69), Expect = 0.004
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 75 YQCPQCPYRASQKATLKTHMAI 96
          Y C +C    S+ + L  H  +
Sbjct: 8  YGCVECGKAFSRSSILVQHQRV 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.81
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.5
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.49
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.47
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.45
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.42
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.41
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.41
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.38
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.38
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.36
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.34
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.32
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.31
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.3
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.29
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.29
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.26
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.25
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.24
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.24
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.23
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.15
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.12
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.09
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.07
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.06
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.05
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.0
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.95
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.94
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.92
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.89
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.89
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.87
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.84
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.83
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.77
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.76
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.74
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.58
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.46
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.45
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.41
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.35
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.24
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.23
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.22
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.17
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.07
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.99
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.99
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.95
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.86
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.82
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.79
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.78
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.74
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.73
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.73
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.73
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.72
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.71
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.69
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.67
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.65
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.65
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.52
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.47
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.35
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.29
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.22
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.22
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.18
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.11
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.11
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.09
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.02
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.0
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.94
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.86
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.74
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.69
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.65
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.63
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.52
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.07
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.0
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.97
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.91
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.91
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.79
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.77
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.69
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.55
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.53
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	95.31
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.89
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	94.82
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.75
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	94.46
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.01
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	93.83
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.8
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	92.63
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	91.83
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	90.96
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	90.6
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	90.53
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	90.34
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	89.81
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	88.77
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	88.7
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	87.71
d1lkoa2	44	Rubrerythrin, C-terminal domain {Desulfovibrio vul	86.85
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	85.06
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	84.43
d1fu9a_	36	U-shaped transcription factor, different fingers {	82.25
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	80.5
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	80.48
d1wjpa1	42	Zinc finger protein 295, ZNF295 {Human (Homo sapie	80.29

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-20  Score=90.38  Aligned_cols=53  Identities=34%  Similarity=0.674  Sum_probs=50.4

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChhHHHHHHHhh
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      +|+|+|+ ||+.|.....|..|+++|+|+++ |.|.+||++|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekp-y~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCS-EECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccC-CcCCCcCCEecCHHHHHHHHhcC
Confidence            5899995 99999999999999999999877 99999999999999999999986

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.9e-15  Score=66.33  Aligned_cols=35  Identities=17%  Similarity=0.379  Sum_probs=18.1

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |+++|++++| |.|.+||++|...++|.+|+++|+|
T Consensus         3 H~~~Ht~ekp-y~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           3 SEWQQRERRR-YKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCSCCCCSCS-SBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             cCcccCCCCC-EecCCCCceeeCHHHHHHhCccCCC
Confidence            4445555444 5555555555555555555555544

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-14  Score=62.23  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=18.7

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      |+++|||+|.+||+.|...++|..|+++|+|
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            5556666666666666666666666666655

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-14  Score=64.42  Aligned_cols=37  Identities=30%  Similarity=0.605  Sum_probs=34.4

Q ss_pred             CccccccCCCceeCCcccccccchhHHHhhhhhhhCC
Q psy12010         35 WPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        35 ~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      .++.+|+++|||+|++||+.|...++|..|+++|+|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4677899999999999999999999999999999984

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.3e-14  Score=63.38  Aligned_cols=37  Identities=22%  Similarity=0.467  Sum_probs=33.3

Q ss_pred             CCCceeCCcccccccchhHHHhhhh-hhhCCCCcccCCC
Q psy12010         42 NSGMFPCDVCGKKYKYKWGLSRHKR-DECGQEPKYQCPQ   79 (99)
Q Consensus        42 ~~k~~~C~~c~~~f~~~~~l~~h~~-~h~~~~~~~~c~~   79 (99)
                      .+|||+|.+||+.|...++|..|++ +|+|++| |+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekp-y~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC-CCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcC-cCCcC
Confidence            4799999999999999999999986 7999777 99963

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.1e-14  Score=60.77  Aligned_cols=32  Identities=25%  Similarity=0.539  Sum_probs=29.8

Q ss_pred             hhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         67 DECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        67 ~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|+|++| |+|.+||++|.+.+.|..|+++|+|
T Consensus         1 IHTgekp-y~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           1 IHSGEKP-YGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTTCCC-EECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             CcCCCCC-eeCCCCCCEeCchHHhHhhccccCC
Confidence            4788777 9999999999999999999999987

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.3e-14  Score=61.14  Aligned_cols=33  Identities=18%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             ccccCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         38 VRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        38 ~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      ++|+|+|||+|.+||+.|..+++|..|+++|.+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            356777777777777777777777777777765

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=6.4e-14  Score=61.51  Aligned_cols=33  Identities=30%  Similarity=0.605  Sum_probs=15.9

Q ss_pred             hhhhhhCCCCcccCCCCCccccChhHHHHHHHhh
Q psy12010         64 HKRDECGQEPKYQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        64 h~~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      |.++|+|++| |+|.+|+++|.+++.|.+|+++|
T Consensus         2 h~R~HTgeKP-y~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSS-BCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccC-eEeCCCCCEecCHHHHHHHHhcC
Confidence            3444444443 55555555555555555554444

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=6.9e-14  Score=61.40  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=32.7

Q ss_pred             ccccccCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         36 PTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        36 ~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +.+.|+|+|||+|.+|++.|.++++|..|++.|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            56789999999999999999999999999999864

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.2e-13  Score=60.27  Aligned_cols=33  Identities=33%  Similarity=0.666  Sum_probs=30.4

Q ss_pred             hhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         66 RDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        66 ~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ++|+|++| |+|.+|+++|.+.+.|..|+++|++
T Consensus         1 R~HTgekP-y~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           1 RTHTGEKP-YACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TTCCCCCC-EECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCC-EECCCCCCCcCCHhHHHHhCcccCC
Confidence            47899877 9999999999999999999999975

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.5e-13  Score=59.29  Aligned_cols=31  Identities=19%  Similarity=0.356  Sum_probs=23.7

Q ss_pred             ccCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         40 QYNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        40 ~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      |+|+|||+|.+|++.|.++++|..|+++|+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            5677777777777777777777777777765

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=2e-13  Score=56.07  Aligned_cols=25  Identities=28%  Similarity=0.529  Sum_probs=16.3

Q ss_pred             ccCCCCCccccChhHHHHHHHhhcC
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |+|.+|+++|..++.|.+|+++|+|
T Consensus         4 y~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           4 FQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             ccCCCCcCEecccccccccCCCccC
Confidence            6666666666666666666666665

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=3.1e-13  Score=55.46  Aligned_cols=28  Identities=25%  Similarity=0.555  Sum_probs=26.9

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +|||+|.+|++.|.+.++|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999987

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.5e-13  Score=58.03  Aligned_cols=32  Identities=9%  Similarity=0.273  Sum_probs=22.5

Q ss_pred             cccCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         39 RQYNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        39 ~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +|+|+|||+|++|++.|..+++|..|++.+++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            56777777777777777777777777654433

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.31  E-value=5.1e-13  Score=55.37  Aligned_cols=28  Identities=29%  Similarity=0.616  Sum_probs=15.6

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      |||.|++|++.|.+.++|..|+++|+|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            3555555555555555555555555553

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=7.6e-13  Score=57.04  Aligned_cols=31  Identities=23%  Similarity=0.548  Sum_probs=28.3

Q ss_pred             hhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         68 ECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        68 h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |+|++| |+|.+|++.|.++++|.+|+++|+.
T Consensus         2 ~TGekP-y~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRP-FVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSC-EECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCcc-ccCCCCCCcccChHHHHHHccccCC
Confidence            578777 9999999999999999999999974

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=8.2e-13  Score=54.66  Aligned_cols=27  Identities=26%  Similarity=0.480  Sum_probs=15.0

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      |||.|++|++.|.++++|..|+++|+|
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htg   27 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQN   27 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCC
Confidence            355555555555555555555555555

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.5e-13  Score=53.28  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=18.0

Q ss_pred             cccCCCCCccccChhHHHHHHHhhc
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      ||+|.+||++|.+++.|.+|+++|+
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCCC
Confidence            3777777777777777777777764

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-12  Score=52.22  Aligned_cols=26  Identities=31%  Similarity=0.589  Sum_probs=24.9

Q ss_pred             CceeCCcccccccchhHHHhhhhhhh
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      |||+|.+||+.|...++|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.6e-12  Score=56.55  Aligned_cols=33  Identities=39%  Similarity=0.785  Sum_probs=28.9

Q ss_pred             hhhhCCCCcccCCCCCccccChhHHHHHHHhhcC
Q psy12010         66 RDECGQEPKYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        66 ~~h~~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ++|+|++| |+|..|+++|.++++|.+|++.+|+
T Consensus         1 R~HTgekP-~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKP-YECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCS-EECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCC-EeCCCCcccccchHHHHHHcccccC
Confidence            46899777 9999999999999999999876553

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.24  E-value=2.6e-12  Score=53.17  Aligned_cols=26  Identities=19%  Similarity=0.456  Sum_probs=25.0

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||+|.+|+++|...+.|.+|+++|+|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTg   27 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTS
T ss_pred             cCCCCCCCCCCCCchHcccccCcccC
Confidence            59999999999999999999999987

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.2e-13  Score=63.96  Aligned_cols=50  Identities=22%  Similarity=0.342  Sum_probs=44.9

Q ss_pred             CCCCCCccccCCcccccCccccccCCCceeCCcccccccchhHHHhhhhhh
Q psy12010         18 YSFNWPEVHLNESDFINWPTVRQYNSGMFPCDVCGKKYKYKWGLSRHKRDE   68 (99)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h   68 (99)
                      +.|. |+..|.....+..|..+|++++||.|.+||+.|...+.|..|+++|
T Consensus         4 y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           4 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             EECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            4564 7778888888889999999999999999999999999999999876

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.2e-12  Score=52.81  Aligned_cols=26  Identities=31%  Similarity=0.798  Sum_probs=24.9

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|.+|+++|.+++.|.+|+++|+|
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htg   27 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQN   27 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCC
Confidence            49999999999999999999999987

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=1.1e-11  Score=56.91  Aligned_cols=33  Identities=18%  Similarity=0.510  Sum_probs=24.5

Q ss_pred             cccCCCceeCCc--ccccccchhHHHhhhhhhhCC
Q psy12010         39 RQYNSGMFPCDV--CGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        39 ~~~~~k~~~C~~--c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      .|++++||.|.+  |++.|...++|..|+++|+|+
T Consensus        12 ~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_          12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             hccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            367777777766  777777777777777777774

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=5.5e-12  Score=57.89  Aligned_cols=38  Identities=11%  Similarity=0.397  Sum_probs=33.3

Q ss_pred             HHHhhhhhhhCCCCcccCCC--CCccccChhHHHHHHHhhcC
Q psy12010         60 GLSRHKRDECGQEPKYQCPQ--CPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        60 ~l~~h~~~h~~~~~~~~c~~--C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .|..|+. |.++++ |.|..  |+++|...+.|..|+++|+|
T Consensus         6 ~l~~h~~-h~gekp-y~C~~~~C~k~F~~~~~L~~H~r~Htg   45 (47)
T d1ncsa_           6 SIDKYVK-EMPDKT-FECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             SGGGSCE-EETTTE-EECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             hhcchhh-ccCCCC-eECCcCCCCccccCchHHHhhcccccC
Confidence            4567775 889776 99977  99999999999999999987

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.7e-11  Score=52.00  Aligned_cols=32  Identities=31%  Similarity=0.750  Sum_probs=29.2

Q ss_pred             eeCCc--ccccccchhHHHhhhhhhhCCCCcccCC
Q psy12010         46 FPCDV--CGKKYKYKWGLSRHKRDECGQEPKYQCP   78 (99)
Q Consensus        46 ~~C~~--c~~~f~~~~~l~~h~~~h~~~~~~~~c~   78 (99)
                      |.|+.  |++.|..+.+|.+|+++|+|++| |.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekp-y~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCC-CSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCC-EeCC
Confidence            67876  99999999999999999999887 9986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.4e-11  Score=49.68  Aligned_cols=25  Identities=36%  Similarity=0.630  Sum_probs=12.3

Q ss_pred             ccCCC--CCccccChhHHHHHHHhhcC
Q psy12010         75 YQCPQ--CPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~~--C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |.|..  |+++|...+.|.+|+++|+|
T Consensus         3 ~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           3 FQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             EECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCceECcHHHcCccccccCC
Confidence            44533  55555555555555555443

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.8e-11  Score=49.51  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=15.4

Q ss_pred             ccCCC--CCccccChhHHHHHHHhhcC
Q psy12010         75 YQCPQ--CPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~~--C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |.|..  |+++|...+.|.+|+++|+|
T Consensus         3 ~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           3 HKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             eeCCCCCCCceECChhHhhhhcCcCcC
Confidence            66655  66666666666666666654

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=7.7e-11  Score=48.86  Aligned_cols=27  Identities=30%  Similarity=0.505  Sum_probs=25.5

Q ss_pred             CceeCCc--ccccccchhHHHhhhhhhhC
Q psy12010         44 GMFPCDV--CGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        44 k~~~C~~--c~~~f~~~~~l~~h~~~h~~   70 (99)
                      |||.|+.  |++.|...++|..|+++|+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            6899988  99999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=9.9e-11  Score=48.58  Aligned_cols=27  Identities=33%  Similarity=0.789  Sum_probs=25.4

Q ss_pred             CceeCCc--ccccccchhHHHhhhhhhhC
Q psy12010         44 GMFPCDV--CGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        44 k~~~C~~--c~~~f~~~~~l~~h~~~h~~   70 (99)
                      |||.|+.  |++.|...++|..|+++|+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCC
Confidence            6899987  99999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.2e-10  Score=47.86  Aligned_cols=26  Identities=42%  Similarity=0.813  Sum_probs=12.8

Q ss_pred             ceeCC--cccccccchhHHHhhhhhhhC
Q psy12010         45 MFPCD--VCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        45 ~~~C~--~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      ||.|+  .|++.|...++|..|+++|+|
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htg   29 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCcccc
Confidence            44442  355555555555555555544

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=1.9e-10  Score=47.28  Aligned_cols=26  Identities=38%  Similarity=0.752  Sum_probs=18.3

Q ss_pred             cccCCC--CCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQ--CPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~--C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|..  |+++|...+.|.+|+++|+|
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccCC
Confidence            377755  77777777777777777765

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=3.1e-10  Score=46.59  Aligned_cols=27  Identities=30%  Similarity=0.675  Sum_probs=25.4

Q ss_pred             CceeCCc--ccccccchhHHHhhhhhhhC
Q psy12010         44 GMFPCDV--CGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        44 k~~~C~~--c~~~f~~~~~l~~h~~~h~~   70 (99)
                      |||.|++  |++.|...++|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899977  99999999999999999986

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=5.2e-10  Score=49.09  Aligned_cols=27  Identities=30%  Similarity=0.625  Sum_probs=24.3

Q ss_pred             CCcccCCCCCccccChhHHHHHHH-hhcC
Q psy12010         72 EPKYQCPQCPYRASQKATLKTHMA-IKHS   99 (99)
Q Consensus        72 ~~~~~c~~C~~~f~~~~~l~~H~~-~~~~   99 (99)
                      ++ |+|.+||++|...++|.+|++ +|+|
T Consensus         4 Kp-y~C~~Cgk~F~~~~~L~~H~r~~Ht~   31 (39)
T d2epsa1           4 KP-YICQSCGKGFSRPDHLNGHIKQVHTS   31 (39)
T ss_dssp             CC-EECSSSCCEESSHHHHHHHHHHTSCC
T ss_pred             CC-ccCCCCCCCcCChHHhhccCcCccCC
Confidence            55 999999999999999999986 6875

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=6.3e-10  Score=42.61  Aligned_cols=25  Identities=36%  Similarity=0.505  Sum_probs=15.4

Q ss_pred             ccCCCCCccccChhHHHHHHHhhcC
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      .+|+.|++.|+.+..|..|+|.|+|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CccchhhhHhcchhHHHHHhhccCC
Confidence            4566666666666666666666654

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=7.4e-10  Score=46.22  Aligned_cols=26  Identities=19%  Similarity=0.459  Sum_probs=24.0

Q ss_pred             cccCC--CCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCP--QCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~--~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|+  .|+++|...+.|.+|+++|+|
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htg   29 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCcccc
Confidence            49995  699999999999999999987

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7.7e-10  Score=42.37  Aligned_cols=26  Identities=38%  Similarity=0.639  Sum_probs=24.2

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      |.+|++|++.|+.+..|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56899999999999999999999976

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=1.3e-09  Score=45.75  Aligned_cols=26  Identities=31%  Similarity=0.638  Sum_probs=12.7

Q ss_pred             CceeCCc--ccccccchhHHHhhhhhhh
Q psy12010         44 GMFPCDV--CGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        44 k~~~C~~--c~~~f~~~~~l~~h~~~h~   69 (99)
                      +||.|++  |++.|....+|..|+++|+
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            4445544  5555555555555554443

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.5e-09  Score=44.07  Aligned_cols=25  Identities=32%  Similarity=0.684  Sum_probs=18.1

Q ss_pred             cccCCC--CCccccChhHHHHHHHhhc
Q psy12010         74 KYQCPQ--CPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        74 ~~~c~~--C~~~f~~~~~l~~H~~~~~   98 (99)
                      ||.|..  |+++|...++|.+|+++|+
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            377765  7777777777777777764

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=4.9e-09  Score=43.89  Aligned_cols=26  Identities=19%  Similarity=0.409  Sum_probs=24.0

Q ss_pred             cccCCC--CCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQ--CPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~--C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|..  |+++|...+.|.+|+++|+.
T Consensus         3 P~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           3 PYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            499987  99999999999999999974

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.6e-09  Score=43.95  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=24.1

Q ss_pred             CceeCCc--ccccccchhHHHhhhhhhh
Q psy12010         44 GMFPCDV--CGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        44 k~~~C~~--c~~~f~~~~~l~~h~~~h~   69 (99)
                      |||.|+.  |++.|....+|..|++.|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899988  9999999999999999985

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=1.9e-08  Score=39.57  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=13.3

Q ss_pred             ccCCCCCccccChhHHHHHHHhh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      |.|..||+.|..+....+|.++|
T Consensus         4 f~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           4 FACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHHGGG
T ss_pred             cccchhhhhhhcchhhhhhhhhc
Confidence            55555555555555555555554

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.4e-08  Score=39.45  Aligned_cols=29  Identities=34%  Similarity=0.636  Sum_probs=23.6

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhhCC
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      +|||+|++|+..|..+..+..|.++|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            47888888888888888888888888764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=8.7e-08  Score=37.65  Aligned_cols=26  Identities=31%  Similarity=0.671  Sum_probs=24.0

Q ss_pred             CCceeCCcccccccchhHHHhhhhhh
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDE   68 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h   68 (99)
                      +|||.|++||+.|.......+|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            58999999999999999999998876

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=5.3e-08  Score=41.75  Aligned_cols=25  Identities=32%  Similarity=0.705  Sum_probs=22.8

Q ss_pred             ccCCC--CCccccChhHHHHHHHhhcC
Q psy12010         75 YQCPQ--CPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~~--C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |.|..  |+++|..+..|.+|+++|+|
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htg   28 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSD   28 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCC
Confidence            67865  99999999999999999986

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1e-07  Score=37.01  Aligned_cols=25  Identities=20%  Similarity=0.418  Sum_probs=19.1

Q ss_pred             ccCCCCCccccChhHHHHHHHhhcC
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ..|.+||++|..++.|++|+-+|+|
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            4677788888888888888777775

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=9.2e-08  Score=39.00  Aligned_cols=31  Identities=35%  Similarity=0.895  Sum_probs=27.8

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcc
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKY   75 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~   75 (99)
                      +...|+.||+.|....+|.+|.-+|.+++| |
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekp-y   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKP-Y   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCC-C
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCC-C
Confidence            456899999999999999999999999776 6

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.8e-07  Score=36.53  Aligned_cols=26  Identities=23%  Similarity=0.714  Sum_probs=17.6

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||+|..|...-..++.|..|.+.|+|
T Consensus         3 pfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           3 PFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             cceeeecccccCCchheEEeeecccC
Confidence            36777776666666677777776665

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=6.5e-07  Score=35.01  Aligned_cols=25  Identities=32%  Similarity=0.691  Sum_probs=22.1

Q ss_pred             ccCCCCCccccChhHHHHHHHhhcC
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |.|.+||......+.|+.|+|+|++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~   26 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTD   26 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred             ccccccCcccCCHHHHHHHHHHhcC
Confidence            7889999999999999999999875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.8e-07  Score=35.56  Aligned_cols=28  Identities=25%  Similarity=0.482  Sum_probs=26.1

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      ++||+|..|...-+..+.|..|.+.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            5799999999999999999999999987

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.1e-07  Score=35.01  Aligned_cols=27  Identities=30%  Similarity=0.565  Sum_probs=24.4

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhCC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      ...|.+||+.|...+.|++|+-+|+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            357999999999999999999999874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=6.4e-07  Score=35.65  Aligned_cols=26  Identities=27%  Similarity=0.631  Sum_probs=24.3

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|+.|+.+|..+..+.-|.++|.|
T Consensus         3 p~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           3 PYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CcccchHHHHhhccccceEeeecccC
Confidence            49999999999999999999999875

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=8.5e-07  Score=35.22  Aligned_cols=26  Identities=27%  Similarity=0.635  Sum_probs=22.0

Q ss_pred             cccCCC--CCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQ--CPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~--C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|..  |++++...++|..|++.+||
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            488865  88999999999999998876

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.07  E-value=1.7e-06  Score=33.76  Aligned_cols=24  Identities=38%  Similarity=0.740  Sum_probs=19.8

Q ss_pred             cccCC--CCCccccChhHHHHHHHhh
Q psy12010         74 KYQCP--QCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        74 ~~~c~--~C~~~f~~~~~l~~H~~~~   97 (99)
                      ||+|.  -|+++|+..+.|++|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            48885  4889999999999998876

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.99  E-value=3.4e-06  Score=31.70  Aligned_cols=23  Identities=26%  Similarity=0.608  Sum_probs=12.8

Q ss_pred             ccCCCCCccccChhHHHHHHHhh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      |+|-.|..+|..++.|.+|+++|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            34555555555555555555554

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=3.2e-06  Score=33.20  Aligned_cols=26  Identities=46%  Similarity=0.953  Sum_probs=20.2

Q ss_pred             cccCCCCCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||+|..|.......++|..|+++.|+
T Consensus         2 py~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             Cccccccccccccchhhhhhhhcccc
Confidence            48888888888888888888877664

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4.2e-06  Score=32.25  Aligned_cols=25  Identities=32%  Similarity=0.829  Sum_probs=19.3

Q ss_pred             cccCCCCCccccChhHHHHHHHhhc
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      ||+|..|...-...++|..|+|+|.
T Consensus         3 p~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           3 PYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CcccccccchhcchhhHhhhhhccc
Confidence            4788888887778888888888764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=6.9e-06  Score=35.13  Aligned_cols=25  Identities=28%  Similarity=0.723  Sum_probs=16.2

Q ss_pred             CCCCcccCCCCCccccChhHHHHHHH
Q psy12010         70 GQEPKYQCPQCPYRASQKATLKTHMA   95 (99)
Q Consensus        70 ~~~~~~~c~~C~~~f~~~~~l~~H~~   95 (99)
                      |-+| |+|..|++.|-++.++.+|..
T Consensus         2 GiKP-YeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKP-YECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCC-EECSSSCCEESCHHHHHHHHH
T ss_pred             CCCc-eeccchhhhhhhHHHHHHhhh
Confidence            3344 777777777777777776643

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.82  E-value=6.7e-06  Score=30.84  Aligned_cols=24  Identities=33%  Similarity=0.699  Sum_probs=22.2

Q ss_pred             eeCCcccccccchhHHHhhhhhhh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      |+|-.|.++|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            689999999999999999999884

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1e-05  Score=31.54  Aligned_cols=26  Identities=27%  Similarity=0.499  Sum_probs=24.4

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCC
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      |.|+.||......+-|+.|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            78999999999999999999999884

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.2e-05  Score=31.49  Aligned_cols=28  Identities=14%  Similarity=0.347  Sum_probs=24.6

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      |||+|..|.......++|..|+...++.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            6899999999999999999999876553

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.1e-05  Score=34.50  Aligned_cols=27  Identities=19%  Similarity=0.609  Sum_probs=23.8

Q ss_pred             cCCCceeCCcccccccchhHHHhhhhh
Q psy12010         41 YNSGMFPCDVCGKKYKYKWGLSRHKRD   67 (99)
Q Consensus        41 ~~~k~~~C~~c~~~f~~~~~l~~h~~~   67 (99)
                      +|-|||+|..|++.|-...++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            477999999999999999999988654

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=1.8e-05  Score=30.79  Aligned_cols=28  Identities=25%  Similarity=0.634  Sum_probs=18.9

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      ++.|.|..|...|...-.|..||-.|+|
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccC
Confidence            3456677777777777677777766665

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=1.4e-05  Score=30.42  Aligned_cols=25  Identities=36%  Similarity=0.713  Sum_probs=19.1

Q ss_pred             eCCcccccccchhHHHhhhhhhhCC
Q psy12010         47 PCDVCGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        47 ~C~~c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      +|+.|.+.|.++..|+.|-+.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            5777888888887777777777774

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.1e-05  Score=31.89  Aligned_cols=27  Identities=26%  Similarity=0.598  Sum_probs=23.7

Q ss_pred             CceeCCc--ccccccchhHHHhhhhhhhC
Q psy12010         44 GMFPCDV--CGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        44 k~~~C~~--c~~~f~~~~~l~~h~~~h~~   70 (99)
                      |||.|.+  |+++|...++|..|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899977  89999999999999997654

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.72  E-value=1.3e-05  Score=33.88  Aligned_cols=27  Identities=15%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +.|+|.+|++.|.+...|-.||+.|..
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcc
Confidence            457777777777777777777777744

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.5e-05  Score=30.72  Aligned_cols=24  Identities=38%  Similarity=0.757  Sum_probs=20.1

Q ss_pred             cccCCCCCccccChhHHHHHHHhh
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      |.+|.+|..+.++++.|..|.|+|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            367888888888888888888887

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.69  E-value=1.9e-05  Score=33.36  Aligned_cols=26  Identities=23%  Similarity=0.529  Sum_probs=23.6

Q ss_pred             CCcccCCCCCccccChhHHHHHHHhhc
Q psy12010         72 EPKYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        72 ~~~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      +. |+|..|++.|.+.-+|-.|++.|.
T Consensus         4 r~-~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           4 RS-YTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SS-EECTTTCCEESSHHHHHHHHHTTC
T ss_pred             Cc-cCCCCCCCccCCcccccchHhhhc
Confidence            44 999999999999999999998874

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.5e-05  Score=31.11  Aligned_cols=23  Identities=30%  Similarity=0.697  Sum_probs=19.6

Q ss_pred             cccCCCCCccccChhHHHHHHHh
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAI   96 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~   96 (99)
                      ||.|..|..+|..+.+|..|+++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            58888899999999999888875

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.1e-05  Score=30.26  Aligned_cols=27  Identities=19%  Similarity=0.320  Sum_probs=24.7

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhh
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      .|||+|..|...-...++|..|+++|.
T Consensus         1 vkp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           1 VKPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCCcccccccchhcchhhHhhhhhccc
Confidence            379999999999999999999999984

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.65  E-value=2e-05  Score=31.42  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=16.6

Q ss_pred             cccCCCCCccccChhHHHHHHHhh
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      ||.|..|++.|..+.-|.+|.+--
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKl   24 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKI   24 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTT
T ss_pred             CcccccccchhhHHHHHHHHHHHH
Confidence            477777777777777777776543

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=5.8e-05  Score=28.64  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=22.5

Q ss_pred             cCCCCCccccChhHHHHHHHhhcC
Q psy12010         76 QCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        76 ~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      +|+.|.+.|.++-.|+.|-|-|+|
T Consensus         2 qcp~c~k~f~skyylkvhnr~htg   25 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTG   25 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSS
T ss_pred             cCcchHHHHHHhHhhhhccccccC
Confidence            789999999999999999999986

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.47  E-value=5.3e-05  Score=29.39  Aligned_cols=25  Identities=24%  Similarity=0.542  Sum_probs=22.1

Q ss_pred             CceeCCc--ccccccchhHHHhhhhhh
Q psy12010         44 GMFPCDV--CGKKYKYKWGLSRHKRDE   68 (99)
Q Consensus        44 k~~~C~~--c~~~f~~~~~l~~h~~~h   68 (99)
                      .||+|+.  |++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5788865  999999999999999887

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.35  E-value=5.4e-05  Score=30.16  Aligned_cols=26  Identities=27%  Similarity=0.663  Sum_probs=22.2

Q ss_pred             ceeCCcccccccchhHHHhhhh-hhhC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKR-DECG   70 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~-~h~~   70 (99)
                      ||.|.+|++.|....-|.+|+. +|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            7999999999999999888876 4544

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=5.7e-05  Score=30.53  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=22.7

Q ss_pred             ccCCCCCccccChhHHHHHHHhhcC
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ..|+.||+.|..--.|.+|.-+|.|
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~   30 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSG   30 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCS
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCC
Confidence            6899999999999999999888765

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.29  E-value=0.00011  Score=28.59  Aligned_cols=26  Identities=15%  Similarity=0.365  Sum_probs=18.3

Q ss_pred             cccCCC--CCccccChhHHHHHHHhhcC
Q psy12010         74 KYQCPQ--CPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        74 ~~~c~~--C~~~f~~~~~l~~H~~~~~~   99 (99)
                      ||.|.+  |.+.|.+.-.|.+|..+|+|
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CcCcccccccccchhhhhhhhhhccccC
Confidence            366643  77777777777777777765

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00017  Score=27.52  Aligned_cols=21  Identities=29%  Similarity=0.610  Sum_probs=15.8

Q ss_pred             cccCCCCCccccChhHHHHHH
Q psy12010         74 KYQCPQCPYRASQKATLKTHM   94 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~   94 (99)
                      ||+|..||+.+..+.+|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            477777888877777777775

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00016  Score=27.99  Aligned_cols=25  Identities=20%  Similarity=0.527  Sum_probs=23.9

Q ss_pred             ccCCCCCccccChhHHHHHHHhhcC
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~~   99 (99)
                      |.|..|...|..+..|..|+-+|+|
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccC
Confidence            8999999999999999999999987

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00012  Score=27.28  Aligned_cols=20  Identities=40%  Similarity=0.869  Sum_probs=10.2

Q ss_pred             ccCCCCCccccChhHHHHHH
Q psy12010         75 YQCPQCPYRASQKATLKTHM   94 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~   94 (99)
                      |+|..|...|-++..|+.|+
T Consensus         3 ykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           3 YKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             EECSSSCCEESSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHH
Confidence            45555555555555555444

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0001  Score=29.34  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=11.7

Q ss_pred             ccCCC--CCccccChhHHHHHH-Hhh
Q psy12010         75 YQCPQ--CPYRASQKATLKTHM-AIK   97 (99)
Q Consensus        75 ~~c~~--C~~~f~~~~~l~~H~-~~~   97 (99)
                      |.|..  |.|+|+..+....|+ |+|
T Consensus         3 Y~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           3 YMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             EECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             ccccCCChhhhhcchhhhhhhccccc
Confidence            55543  555555555555554 443

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00027  Score=26.31  Aligned_cols=22  Identities=23%  Similarity=0.546  Sum_probs=20.2

Q ss_pred             ceeCCcccccccchhHHHhhhh
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKR   66 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~   66 (99)
                      ||+|..|...|-++.+|+.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999874

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.09  E-value=0.00025  Score=27.52  Aligned_cols=28  Identities=32%  Similarity=0.659  Sum_probs=23.9

Q ss_pred             CceeCCc--ccccccchhHHHhhhhhhhCC
Q psy12010         44 GMFPCDV--CGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        44 k~~~C~~--c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      +||.|.+  |.+.|....+|.+|.-.|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5788854  889999999999999999873

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00023  Score=27.16  Aligned_cols=22  Identities=41%  Similarity=0.646  Sum_probs=19.8

Q ss_pred             ceeCCcccccccchhHHHhhhh
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKR   66 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~   66 (99)
                      ||+|..||+.|-.+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6899999999999999988864

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00028  Score=27.35  Aligned_cols=24  Identities=25%  Similarity=0.610  Sum_probs=22.1

Q ss_pred             ceeCCcccccccchhHHHhhhhhh
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDE   68 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h   68 (99)
                      ||.|..|.-.|..+.+|..||.+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            689999999999999999999864

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00035  Score=27.12  Aligned_cols=25  Identities=28%  Similarity=0.676  Sum_probs=16.4

Q ss_pred             cccCCCCCccccChhHHHHHHHhhc
Q psy12010         74 KYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        74 ~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      ||+|..|..--.+.++|..|++--|
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHHHHc
Confidence            4777777666667777777766443

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00022  Score=28.32  Aligned_cols=22  Identities=18%  Similarity=0.537  Sum_probs=19.2

Q ss_pred             CceeCCc--ccccccchhHHHhhh
Q psy12010         44 GMFPCDV--CGKKYKYKWGLSRHK   65 (99)
Q Consensus        44 k~~~C~~--c~~~f~~~~~l~~h~   65 (99)
                      |||.|++  |.+.|.+.++-..|+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHH
T ss_pred             CCccccCCChhhhhcchhhhhhhc
Confidence            6899987  999999998877776

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00075  Score=28.21  Aligned_cols=28  Identities=25%  Similarity=0.512  Sum_probs=18.6

Q ss_pred             CCCceeC--CcccccccchhHHHhhhhhhh
Q psy12010         42 NSGMFPC--DVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        42 ~~k~~~C--~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      .+|||.|  +-|+..|.+...|..|..-|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            3567777  447777777777777766554

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0007  Score=27.46  Aligned_cols=28  Identities=29%  Similarity=0.718  Sum_probs=23.9

Q ss_pred             ceeCCcccccccchhHHHhhhhhhhCCC
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDECGQE   72 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~~~~   72 (99)
                      .|.|..|++.|.....+.+|.....|..
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~d   31 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGPD   31 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCCC
Confidence            5889999999999999999988877643

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00089  Score=25.61  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=22.4

Q ss_pred             ceeCCcccccccchhHHHhhhhhhh
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      |-+|+.|..+..++..|..|.++|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5689999999999999999999874

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.63  E-value=0.0011  Score=24.73  Aligned_cols=24  Identities=33%  Similarity=0.733  Sum_probs=16.8

Q ss_pred             ccCCCCCccccChhHHHHHHHhhc
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      |.|+.|-+.|..+.++..|.++.|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            567777777777777777766654

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0014  Score=25.41  Aligned_cols=27  Identities=30%  Similarity=0.481  Sum_probs=22.7

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhC
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      +||+|..|.---.+.++|..|++.-++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            589999999888888999999886544

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0029  Score=25.56  Aligned_cols=24  Identities=17%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             ccCCCCCccccChhHHHHHHHhhc
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      |.|..|++.|..+..+.+|-...+
T Consensus         5 fvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeecccccchhcchHHHHHhhhcC
Confidence            899999999999999999976543

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0027  Score=25.83  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=13.9

Q ss_pred             cccccchhHHHhhhhhhhCC
Q psy12010         52 GKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        52 ~~~f~~~~~l~~h~~~h~~~   71 (99)
                      ++.|.....|..|++.|+|+
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            35577777777777777763

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.005  Score=25.62  Aligned_cols=26  Identities=23%  Similarity=0.544  Sum_probs=21.6

Q ss_pred             CCcccC--CCCCccccChhHHHHHHHhh
Q psy12010         72 EPKYQC--PQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        72 ~~~~~c--~~C~~~f~~~~~l~~H~~~~   97 (99)
                      ++||.|  .-|+.+|.....|..|..-|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            345999  45999999999999998765

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0028  Score=25.78  Aligned_cols=19  Identities=16%  Similarity=0.030  Sum_probs=17.0

Q ss_pred             CccccChhHHHHHHHhhcC
Q psy12010         81 PYRASQKATLKTHMAIKHS   99 (99)
Q Consensus        81 ~~~f~~~~~l~~H~~~~~~   99 (99)
                      ++.|...-.|..|+|+|||
T Consensus        14 ~~pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHC
T ss_pred             CCcchhHHHHHHHHhhcCC
Confidence            5679999999999999987

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0028  Score=24.08  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=17.0

Q ss_pred             eeCCcccccccchhHHHhhhhh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRD   67 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~   67 (99)
                      |+|+.|+.....+++|..|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            6788888888888888777764

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0054  Score=23.26  Aligned_cols=24  Identities=29%  Similarity=0.779  Sum_probs=21.8

Q ss_pred             ccCCCCCccccChhHHHHHHHhhc
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      |+|+.|+-.-..++.|..|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            899999999999999999998655

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.77  E-value=0.0039  Score=24.94  Aligned_cols=20  Identities=30%  Similarity=0.594  Sum_probs=16.1

Q ss_pred             ccCCCCCccccChhHHHHHH
Q psy12010         75 YQCPQCPYRASQKATLKTHM   94 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~   94 (99)
                      |.|.-||-+|++.+.|..|+
T Consensus         9 f~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHT
T ss_pred             eeccccceeecChhHHHhhh
Confidence            77888888888888887775

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0035  Score=27.45  Aligned_cols=26  Identities=31%  Similarity=0.773  Sum_probs=22.4

Q ss_pred             CceeCCcccccccchhHHHhhhhhhh
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      .-|.|-.|+|.|.....|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            35889999999999999999988774

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0054  Score=26.84  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             ccCCCCCccccChhHHHHHHHhh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      |.|-.|+|.|.....|.+|.--|
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeccccccccCCHHHHhHhHHhc
Confidence            89999999999999999997543

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.55  E-value=0.008  Score=23.51  Aligned_cols=27  Identities=30%  Similarity=0.775  Sum_probs=19.9

Q ss_pred             ceeC--CcccccccchhHHHhhhhhhhCC
Q psy12010         45 MFPC--DVCGKKYKYKWGLSRHKRDECGQ   71 (99)
Q Consensus        45 ~~~C--~~c~~~f~~~~~l~~h~~~h~~~   71 (99)
                      .|-|  +.|+..|...+.|..|...|+|+
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            4555  45778888888888888888773

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.53  E-value=0.0053  Score=22.73  Aligned_cols=22  Identities=27%  Similarity=0.652  Sum_probs=20.0

Q ss_pred             eeCCcccccccchhHHHhhhhh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRD   67 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~   67 (99)
                      |.|+.|=+.|..+.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999998775

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.31  E-value=0.03  Score=24.32  Aligned_cols=29  Identities=17%  Similarity=0.234  Sum_probs=23.5

Q ss_pred             cCCCceeCCcccccccchhHHHhhhhhhh
Q psy12010         41 YNSGMFPCDVCGKKYKYKWGLSRHKRDEC   69 (99)
Q Consensus        41 ~~~k~~~C~~c~~~f~~~~~l~~h~~~h~   69 (99)
                      ..++|-.|+.|+....+..+|.+|..+.+
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            35678889999998888889988887643

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.89  E-value=0.008  Score=24.00  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             ceeCCcccccccchhHHHhhhh
Q psy12010         45 MFPCDVCGKKYKYKWGLSRHKR   66 (99)
Q Consensus        45 ~~~C~~c~~~f~~~~~l~~h~~   66 (99)
                      .|-|.-||-.|.+.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4789999999999999999875

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.02  Score=21.98  Aligned_cols=20  Identities=25%  Similarity=0.595  Sum_probs=10.6

Q ss_pred             ccCCCCCccccChhHHHHHH
Q psy12010         75 YQCPQCPYRASQKATLKTHM   94 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~   94 (99)
                      |.|..||+.+.+...++-|.
T Consensus         3 ftc~hcgkqlks~~gmkyhv   22 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHV   22 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEE
Confidence            45555555555555555444

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.75  E-value=0.016  Score=21.78  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=13.6

Q ss_pred             CCCCccccChhHHHHHHHhhc
Q psy12010         78 PQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        78 ~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      +.|++.|..-..|+.|+-+|+
T Consensus         7 e~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeeccc
Confidence            346777777667776665554

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.014  Score=27.21  Aligned_cols=42  Identities=17%  Similarity=0.322  Sum_probs=27.9

Q ss_pred             cccCCCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccc
Q psy12010         39 RQYNSGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRA   84 (99)
Q Consensus        39 ~~~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f   84 (99)
                      ..+....|.|+.|++.|.....+..   +-..... |.|..|+...
T Consensus         8 d~~~~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~-F~C~~C~~el   49 (62)
T d1vd4a_           8 DSTNRASFKCPVCSSTFTDLEANQL---FDPMTGT-FRCTFCHTEV   49 (62)
T ss_dssp             SCCSSSEEECSSSCCEEEHHHHHHH---EETTTTE-EBCSSSCCBC
T ss_pred             ccccCCceECCCCCCCcchhhHHHh---cCcCCCe-EEecCCCCEE
Confidence            3345678999999999987654332   2222233 9999997654

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.024  Score=21.54  Aligned_cols=19  Identities=11%  Similarity=0.375  Sum_probs=14.6

Q ss_pred             CCCccccChhHHHHHHHhh
Q psy12010         79 QCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        79 ~C~~~f~~~~~l~~H~~~~   97 (99)
                      -|.+.|...+.+..|+-+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            4788888888888887664

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.038  Score=21.07  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=14.5

Q ss_pred             CCCCCccccChhHHHHHHHhh
Q psy12010         77 CPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        77 c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      .+-||+.|+.+..|..|.+-.
T Consensus         5 f~gc~kifsnrqylnhh~kyq   25 (30)
T d2dlka1           5 FPGCGRIFSNRQYLNHHKKYQ   25 (30)
T ss_dssp             STTTCCEESSHHHHHHHHHHG
T ss_pred             CCCchhhhccHHHHHhHHHHH
Confidence            345788888887777776543

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.015  Score=27.52  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=12.1

Q ss_pred             eeCCcccccccchhHHHhhhh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKR   66 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~   66 (99)
                      |-|..|++.|.+...|..|++
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            556666666666655555543

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.63  E-value=0.065  Score=21.51  Aligned_cols=22  Identities=18%  Similarity=0.472  Sum_probs=13.5

Q ss_pred             ccCCCCCccccChhHHHHHHHh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAI   96 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~   96 (99)
                      |.|.+|.+.+..-+++.+|--+
T Consensus         9 yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           9 YRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             EECTTTCCEESSHHHHHHHHHH
T ss_pred             EEeehhhHHHHHHHHHHHHHHh
Confidence            6666666666666666666443

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=91.83  E-value=0.076  Score=21.84  Aligned_cols=27  Identities=30%  Similarity=0.632  Sum_probs=19.8

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcc
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR   83 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~   83 (99)
                      ++-|.|.+||..             +.| ++|-+|+.|+..
T Consensus         3 ~~~~vC~vCGyi-------------~~g-~~Pe~CPvCg~~   29 (36)
T d1yuza2           3 DKFHLCPICGYI-------------HKG-EDFEKCPICFRP   29 (36)
T ss_dssp             CCEEECSSSCCE-------------EES-SCCSBCTTTCCB
T ss_pred             CCEEECCCCCCE-------------eeC-CCCCcCCCCCCc
Confidence            567899999964             346 455899999853

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.96  E-value=0.18  Score=21.73  Aligned_cols=27  Identities=30%  Similarity=0.624  Sum_probs=22.6

Q ss_pred             CCcccCCCCCccccChhHHHHHHHhhc
Q psy12010         72 EPKYQCPQCPYRASQKATLKTHMAIKH   98 (99)
Q Consensus        72 ~~~~~c~~C~~~f~~~~~l~~H~~~~~   98 (99)
                      +.|-.|+.|+....++.+|.+|...-|
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            334899999999999999999987543

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.60  E-value=0.035  Score=26.23  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=20.3

Q ss_pred             ccCCCCCccccChhHHHHHHHh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAI   96 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~   96 (99)
                      |-|..|++.|.+...|..|.++
T Consensus        16 fYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTTC
T ss_pred             EecccccCccCCHHHHHHHHcc
Confidence            8899999999999999999765

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.53  E-value=0.093  Score=21.70  Aligned_cols=27  Identities=22%  Similarity=0.674  Sum_probs=19.4

Q ss_pred             CCceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcc
Q psy12010         43 SGMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR   83 (99)
Q Consensus        43 ~k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~   83 (99)
                      ++-|.|.+||..             +.|. +|..|+.|+..
T Consensus         3 ~~~~~C~vCG~i-------------~~g~-~P~~CPvCg~~   29 (37)
T d1nnqa2           3 KKVYICPICGYT-------------AVDE-APEYCPVCGAP   29 (37)
T ss_dssp             SCEEECTTTCCE-------------EESC-CCSBCTTTCCB
T ss_pred             CcEEECCCCCCE-------------ecCC-CCCcCCCCCCc
Confidence            456899999964             3453 45899999854

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.34  E-value=0.11  Score=24.10  Aligned_cols=23  Identities=35%  Similarity=0.790  Sum_probs=13.1

Q ss_pred             ccCCCCCccccChhHHHHHHHhh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAIK   97 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~~   97 (99)
                      |+|..|...|-+...|..|...|
T Consensus        19 yQC~HCd~K~~s~~el~~hl~~h   41 (75)
T d1x6fa1          19 YQCKHCDSKLQSTAELTSHLNIH   41 (75)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHH
T ss_pred             eeechhHHHHhhHHHHHHHHHhc
Confidence            56666665665555555555443

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.81  E-value=0.12  Score=22.40  Aligned_cols=20  Identities=20%  Similarity=0.615  Sum_probs=16.2

Q ss_pred             ccCCCCCccccChhHHHHHH
Q psy12010         75 YQCPQCPYRASQKATLKTHM   94 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~   94 (99)
                      -+|..|+..++.+..++.|+
T Consensus         7 ~eC~lC~vKYs~~~SvrdHi   26 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHI   26 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccCcccceeeeeecchHhhh
Confidence            68888888888888887775

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=88.77  E-value=0.14  Score=21.08  Aligned_cols=34  Identities=9%  Similarity=-0.110  Sum_probs=22.1

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccChh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQKA   88 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~~   88 (99)
                      +.|+.||..|..        ........ -.|..||..+.++.
T Consensus         3 ~vc~~cG~~Yh~--------~~~pPk~~-g~CD~cg~~L~qR~   36 (37)
T d2ak3a2           3 WIHPGSGRVYNI--------EFNPPKTM-GIDDLTGEPLVQRE   36 (37)
T ss_dssp             EEETTTTEEEET--------TTBCCSST-TBCTTTCCBCBCCG
T ss_pred             eeeCCcCChhhh--------ccCCcccc-CCccCCCCcCEecC
Confidence            578889987643        33334344 78999987766543

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.44  Score=22.01  Aligned_cols=30  Identities=17%  Similarity=0.335  Sum_probs=25.8

Q ss_pred             cCCCceeCCcccccccchhHHHhhhhhhhC
Q psy12010         41 YNSGMFPCDVCGKKYKYKWGLSRHKRDECG   70 (99)
Q Consensus        41 ~~~k~~~C~~c~~~f~~~~~l~~h~~~h~~   70 (99)
                      .....|+|..|...|.....|..|...|..
T Consensus        14 ~~s~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          14 LQNSTYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             CCCSCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             cCCceeeechhHHHHhhHHHHHHHHHhccH
Confidence            345679999999999999999999988864

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.71  E-value=0.24  Score=19.80  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=16.8

Q ss_pred             ccCCCCCccccChhHHHHHHH
Q psy12010         75 YQCPQCPYRASQKATLKTHMA   95 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~   95 (99)
                      |.|+.|-+-..+...|.+|+.
T Consensus         8 yiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           8 YLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             EECSSSCCEESCHHHHHHHHH
T ss_pred             eeehhhhhhhCCHHHHHHHHH
Confidence            788888888888888888864

>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=86.85  E-value=0.072  Score=22.94  Aligned_cols=27  Identities=26%  Similarity=0.614  Sum_probs=19.3

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcc
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR   83 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~   83 (99)
                      ..+.|..||..             |.|..+|-.|+.|+..
T Consensus         7 ~~W~C~~CGyi-------------~~g~~aP~~CPvC~~p   33 (44)
T d1lkoa2           7 TKWRCRNCGYV-------------HEGTGAPELCPACAHP   33 (44)
T ss_dssp             EEEEETTTCCE-------------EEEEECCSBCTTTCCB
T ss_pred             eEEEcCCCCcE-------------EECCCCCCcCCCCCCc
Confidence            35889999964             3455566899999753

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=85.06  E-value=0.36  Score=20.71  Aligned_cols=37  Identities=22%  Similarity=0.485  Sum_probs=21.2

Q ss_pred             CceeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcc
Q psy12010         44 GMFPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYR   83 (99)
Q Consensus        44 k~~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~   83 (99)
                      +.|.|..||..|.-...  .-.....-... |.|++|+..
T Consensus         2 ~~y~C~~CgyiYd~~~G--dgt~Fe~LP~d-w~CP~C~a~   38 (45)
T d6rxna_           2 QKYVCNVCGYEYDPAEH--DNVPFDQLPDD-WCCPVCGVS   38 (45)
T ss_dssp             CCEEETTTCCEECGGGG--TTCCGGGSCTT-CBCTTTCCB
T ss_pred             CCeEeCCCCeEECcccC--CCCCHHHCCCC-CCCcCCCCc
Confidence            35899999988755321  00111112244 889999754

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.43  E-value=0.38  Score=19.85  Aligned_cols=33  Identities=12%  Similarity=0.013  Sum_probs=20.9

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCccccCh
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRASQK   87 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~~~   87 (99)
                      ..|..||+.|...        ....... -.|..||..+.++
T Consensus         3 r~C~~cG~~Yh~~--------~~ppk~~-g~CD~cg~~L~qR   35 (38)
T d1akya2           3 LIHPASGRSYHKI--------FNPPKED-MKDDVTGEALVQR   35 (38)
T ss_dssp             EECTTTCCEEETT--------TBCCSST-TBCTTTCCBCBCC
T ss_pred             cCCcCccchhhhh--------ccCcCcC-CccCCCCCEeeec
Confidence            4688898876432        2333333 6788888776554

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.25  E-value=0.43  Score=19.22  Aligned_cols=19  Identities=21%  Similarity=0.387  Sum_probs=12.4

Q ss_pred             CCCCCccccChhHHHHHHH
Q psy12010         77 CPQCPYRASQKATLKTHMA   95 (99)
Q Consensus        77 c~~C~~~f~~~~~l~~H~~   95 (99)
                      |..|.-+|..-..+..|.+
T Consensus        11 C~~CDI~Fn~~~T~~aHKk   29 (36)
T d1fu9a_          11 CSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             ETTTTEECSSHHHHHHHHH
T ss_pred             HhhCCceehhHHHHHHHHH
Confidence            5666667776666666654

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.50  E-value=0.47  Score=19.16  Aligned_cols=31  Identities=23%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             eeCCcccccccchhHHHhhhhhhhCCCCcccCCCCCcccc
Q psy12010         46 FPCDVCGKKYKYKWGLSRHKRDECGQEPKYQCPQCPYRAS   85 (99)
Q Consensus        46 ~~C~~c~~~f~~~~~l~~h~~~h~~~~~~~~c~~C~~~f~   85 (99)
                      +.|..||..|...        ....... -.|..||..+.
T Consensus         3 r~C~~CG~~Yh~~--------~~pPk~~-g~CD~cG~~L~   33 (35)
T d1zina2           3 RICRNCGATYHLI--------FHPPAKP-GVCDKCGGELY   33 (35)
T ss_dssp             EEETTTCCEEETT--------TBCCSST-TBCTTTCCBEE
T ss_pred             cCCcCcCchhccc--------cCCCCCC-CcCCCCCCCcc
Confidence            5688888876432        2333333 78888876543

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.48  E-value=0.32  Score=19.62  Aligned_cols=19  Identities=16%  Similarity=0.342  Sum_probs=8.9

Q ss_pred             cCCCCCccccChhHHHHHH
Q psy12010         76 QCPQCPYRASQKATLKTHM   94 (99)
Q Consensus        76 ~c~~C~~~f~~~~~l~~H~   94 (99)
                      .|-+|-+.|.+...+.+|+
T Consensus         5 tclecmrtfkssfsiwrhq   23 (41)
T d1wjpa3           5 TCLECMRTFKSSFSIWRHQ   23 (41)
T ss_dssp             EEGGGTEECSSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhh
Confidence            3444444555444444443

>d1wjpa1 g.37.1.1 (A:1-42) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.29  E-value=1.1  Score=18.15  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=14.6

Q ss_pred             ccCCCCCccccChhHHHHHHHh
Q psy12010         75 YQCPQCPYRASQKATLKTHMAI   96 (99)
Q Consensus        75 ~~c~~C~~~f~~~~~l~~H~~~   96 (99)
                      |+|..|...+.+.-.-..|.|.
T Consensus        17 y~crlcnakl~slleqgnherl   38 (42)
T d1wjpa1          17 YQCRLCNAKLSSLLEQGSHERL   38 (42)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH
T ss_pred             eeeeehhhhHHHHHHcccHHhH
Confidence            7777777777766555555553